<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 02:34:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323621" ref_strand="+" ref_description="SGN-E323621 [cTOC-2-J2]">
      <seq>agctgagaggccagatgttttgactatcgcccaagacccttacttgacatacacaaagaaatgatacgaagatgttaatcaccacaacttatgcagagaggttcgtgtctctcgtctatgtaagtggttgctctcctaatgtacagacgaggagtggtgctcggggaattttgtacagttgtaaagcgcatgtaattttttgtccctgtaccttcatctggtccattaccatgttttccatattttggttttctcatctcggaaggtctattatgccatgcttatttcatgttttggaattcgatgtgtgcatcgatgaaatttcatggcgatttaagaaatcaattgtgtagattctacctactagtatgttggtagaggttatacatactttgcttgaggaaaaaaagacattcaagtgaagtggttgatgaaaatatttcatcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="4744" stop="3692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4444" g_stop="3992" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E323621" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4444" e_stop="3992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGAGAGGCCAGATGTTTTGACTATCGCCCAAGACCCTTACTTGACATACACAAAGAAATGATACGAAGATGTTAATCACCACAACTTAGGCAGAGAGGTTCGTGTCTCTCGTCTATGTAAGTGGTTGCTCTCCTAATGTAGAGACGAGGAGTGGTGCTCGGGGAATTTTGTACAGTTGTAAAGCGCATGTAATTTTTTGTCCCTGTACCTTCATCTGGTCCATTACCATGTTTTCCATATTTTGGTTTTCTCATCTCGGAAGGTCTATTATGCCATGCTTATTTCATGTTTTGGAATTCGATGTGTGCATCGATGAAATTTCATGGCGATTTAAGAAATCAATTGTGTAGATTCTACCTACTAGTATGTTGGTAGAGGTTATACATACTTTGCTTGAGGAAAAAAAGACATTCAAGTGAAGTGGTTGATGAAAATATTTCATCATCTAAT</genome_strand>
        <mrna_strand>AGCTGAGAGGCCAGATGTTTTGACTATCGCCCAAGACCCTTACTTGACATACACAAAGAAATGATACGAAGATGTTAATCACCACAACTTATGCAGAGAGGTTCGTGTCTCTCGTCTATGTAAGTGGTTGCTCTCCTAATGTACAGACGAGGAGTGGTGCTCGGGGAATTTTGTACAGTTGTAAAGCGCATGTAATTTTTTGTCCCTGTACCTTCATCTGGTCCATTACCATGTTTTCCATATTTTGGTTTTCTCATCTCGGAAGGTCTATTATGCCATGCTTATTTCATGTTTTGGAATTCGATGTGTGCATCGATGAAATTTCATGGCGATTTAAGAAATCAATTGTGTAGATTCTACCTACTAGTATGTTGGTAGAGGTTATACATACTTTGCTTGAGGAAAAAAAGACATTCAAGTGAAGTGGTTGATGAAAATATTTCATCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699002" ref_strand="+" ref_description="SGN-E699002 [FA08BA07]">
      <seq>gatcagaacacattttgcactgtgttggagtactgtagtgggaaggaccttgatgcagttctcaaagcaacacctgtgttgccagaaagggaagcaagaatcatcattgtgcaggtttttcaaggccttatttacttaaataaaaagtcacagaggatcatccattatgatctgaagccagggaatgttctatttgatgagcttggtgttgctaaagttaccgattttggtctaagcaagatagtggaagatgatgtcggatcccagggtatggaactcacatcccagggagcgggaacgtactggtatctacctcccgaatgctttgagctaagcaagacacctcttatatcctcgagagttgatgtctggtcagctggtattttgttgtaccaaatgctgtttggtaaacgcccctttgggcacgaccaaacacaagagagaatactaagggaggacacaattattaaagcaagaaaggtcgagttccctacaagaccagctgtctctaatgaggcaaaggagtttattcgtcgttgtttaacatataatcaagctgagaggccagatgttttgactatcgcccaagacccttacttaacatacacaaagaaatgatacgaagatgttaatcaccacaacttaggcagagaggttcgtgtctctcgtctatgtaagtggttgctctccttatgtagagacgaggagtggtgctcggggaattttgtacagttgtaaagcgcatgtaattttttgtccctgtaccttcatctggtccattcccatgttttccatattttggttttctcacctcggaaagtctattatgccatgcttatttcatgttttggaaatcgatgtgtgcatcgatgaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="6346" stop="3821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6046" g_stop="6007" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6006" i_stop="5893" i_length="114">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5892" g_stop="5628" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="305" r_length="265" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5627" i_stop="5496" i_length="132">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5495" g_stop="5441" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="360" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5440" i_stop="5216" i_length="225">
            <donor d_prob="0.762" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5215" g_stop="5054" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="522" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5053" i_stop="4477" i_length="577">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4476" g_stop="4121" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="878" r_length="356" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E699002" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6046" e_stop="6007"/>
          <exon e_start="5892" e_stop="5628"/>
          <exon e_start="5495" e_stop="5441"/>
          <exon e_start="5215" e_stop="5054"/>
          <exon e_start="4476" e_stop="4121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGAACACATTTTGCACTGTGTTGGAGTACTGTAGTGGTGTGTTTACTCCCTTTATTGCATAATCAATATGGAACAATTACAATTATGTTCAGTGCAATGAGGTATTTGAGGATTATCTCTCATATTAGTCATAAATGTTTTTGCCTGTAGGGAAGGACCTTGATGCAGTTCTCAAAGCAACACCTGTGTTGCCAGAAAGGGAAGCAAGAATCATCATTGTGCAGGTTTTTCAAGGCCTTATTTACTTAAATAAAAAGTCACAGAGGATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTGGTGAGTGGTAGATTTATGCTGTCATCATGTTTTTAGTGAGGTGCACTGTTCTGAACCTACTTTTGCTGTCATCTCTTGCCTTTGTAAAATTTTTACTAAGGTCCATTATTTCTGGATGTATTGTTTCTATAGGTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGAGTGAGTTCTCCTGCTTTGCTTTAACTTGTTGATAAAGTTAAATAGGACTCCACTGTAGACCAGGAGTACACAACATTTTTTACAAATAGTTTGTTTCTAAAGATCTTGGACTTAATGCTGTGTCTGCATCTTGATTGATGCATATTTAATCCTAAACATGATGAATGAACAGTTAACTATGTGTTTTTATGAACTAAACTCGTAAATTTATATTTATGTAACTAGGTTGATGTCTGGTCAGCTGGTATTTTGTTGTACCAAATGCTGTTTGGTAAACGCCCCTTTGGGCACGACCAAACACAAGAGAGAATACTAAGGGAGGACACAATTATTAAAGCAAGAAAGGTCGAGTTCCCTACAAGACCAGCTGTCTCTAATGAGGCAAAGGTGAGGTTTTCTCCTTGCTATATCTGACGATATTTCTCATCTGACAATGATATGATAAATTGTCCCTATTTTGTTTTCCTTTTTGTGAGCATTATCAAGATAACCCGGAGGCCCAATTCAAAAATAAAAATGAAACCATTGACGTTGCCTACATTTTTAGGTCATTTGATGCCCCAAATGTGGTAAACTTTTGGTCACAGCTATGCTGTTCTTTTACTGATACATAATAATATGGCTTTGATTCAAGTTGAGTACATGCGCCAGTTGGCTCCATGCTTTATCTCAATCCCCATCAACTATTGATTACTAGCATGACAGTAGTCCATACATACCATGACCAGAAACATCTGGAGCATATCAAGATTCAGAATCAGGATACTAGAACTTAACTCTCGTGTCCGATATGACTACTCTGGGCATACTAGCTAATTGATGAAACAAAACTTCATTAAGCAATGTACAAGAAAAGTTAAATTTCAACAATATTTTCAGACTTATTAGGATTTTGTTATATTGCTCTTGCCACTGATTCTTGGATCGCTGTTTTATTGATTCTCTTTTCTATGTGTTTGAGCAGGAGTTTATTCGTCGTTGTTTAACATATAATCAAGCTGAGAGGCCAGATGTTTTGACTATCGCCCAAGACCCTTACTTGACATACACAAAGAAATGATACGAAGATGTTAATCACCACAACTTAGGCAGAGAGGTTCGTGTCTCTCGTCTATGTAAGTGGTTGCTCTCCTAATGTAGAGACGAGGAGTGGTGCTCGGGGAATTTTGTACAGTTGTAAAGCGCATGTAATTTTTTGTCCCTGTACCTTCATCTGGTCCATTACCATGTTTTCCATATTTTGGTTTTCTCATCTCGGAAGGTCTATTATGCCATGCTTATTTCATGTTTTGGAATTCGATGTGTGCATCGATGAAATTT</genome_strand>
        <mrna_strand>GATCAGAACACATTTTGCACTGTGTTGGAGTACTGTAGTG..................................................................................................................GGAAGGACCTTGATGCAGTTCTCAAAGCAACACCTGTGTTGCCAGAAAGGGAAGCAAGAATCATCATTGTGCAGGTTTTTCAAGGCCTTATTTACTTAAATAAAAAGTCACAGAGGATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTCGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTG....................................................................................................................................GTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGA.................................................................................................................................................................................................................................GTTGATGTCTGGTCAGCTGGTATTTTGTTGTACCAAATGCTGTTTGGTAAACGCCCCTTTGGGCACGACCAAACACAAGAGAGAATACTAAGGGAGGACACAATTATTAAAGCAAGAAAGGTCGAGTTCCCTACAAGACCAGCTGTCTCTAATGAGGCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTATTCGTCGTTGTTTAACATATAATCAAGCTGAGAGGCCAGATGTTTTGACTATCGCCCAAGACCCTTACTTAACATACACAAAGAAATGATACGAAGATGTTAATCACCACAACTTAGGCAGAGAGGTTCGTGTCTCTCGTCTATGTAAGTGGTTGCTCTCCTTATGTAGAGACGAGGAGTGGTGCTCGGGGAATTTTGTACAGTTGTAAAGCGCATGTAATTTTTTGTCCCTGTACCTTCATCTGGTCCATTCCCATGTTTTCCATATTTTGGTTTTCTCACCTCGGAAAGTCTATTATGCCATGCTTATTTCATGTTTTGGAAATCGATGTGTGCATCGATGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241812" ref_strand="+" ref_description="SGN-E241812 [cLED-27-G3]">
      <seq>atcatccattatgatctgaagccagggaatgttctatttgatgagcttggtgttgctaaagttaccgattttggtctaagcaagatagtggaagatgatgttggatcccagggtatggaactcacatcccagggagcgggaacgtactggtatctacctcccgaatgctttgagctaagcaagacacctcttatatcctcgagagttgatgtctggtcagctggtattttgttgtaccaaatgctgtttggtaaacgcccctttgggcacgaccaaacacaagagagaatactaagggaggacacaattattaaagcaagaaaggtcgagttccctacaagaccagctgtctctaatgaggcaaaggagtttattcgtcgttgtttaacatataatcaagctgagaggccagatgttttgactatcgcccaagacccttacttgacatacacaaagaaatgatacgaagatgttaatcaccacaacttaggcagagaggttcgtgtctctcgtctatgtaagtggttgctctcctaatgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="6076" stop="4001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5776" g_stop="5628" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5627" i_stop="5496" i_length="132">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5495" g_stop="5441" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="204" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5440" i_stop="5216" i_length="225">
            <donor d_prob="0.762" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5215" g_stop="5054" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="366" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5053" i_stop="4477" i_length="577">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4476" g_stop="4301" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="542" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E241812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5776" e_stop="5628"/>
          <exon e_start="5495" e_stop="5441"/>
          <exon e_start="5215" e_stop="5054"/>
          <exon e_start="4476" e_stop="4301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTGGTGAGTGGTAGATTTATGCTGTCATCATGTTTTTAGTGAGGTGCACTGTTCTGAACCTACTTTTGCTGTCATCTCTTGCCTTTGTAAAATTTTTACTAAGGTCCATTATTTCTGGATGTATTGTTTCTATAGGTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGAGTGAGTTCTCCTGCTTTGCTTTAACTTGTTGATAAAGTTAAATAGGACTCCACTGTAGACCAGGAGTACACAACATTTTTTACAAATAGTTTGTTTCTAAAGATCTTGGACTTAATGCTGTGTCTGCATCTTGATTGATGCATATTTAATCCTAAACATGATGAATGAACAGTTAACTATGTGTTTTTATGAACTAAACTCGTAAATTTATATTTATGTAACTAGGTTGATGTCTGGTCAGCTGGTATTTTGTTGTACCAAATGCTGTTTGGTAAACGCCCCTTTGGGCACGACCAAACACAAGAGAGAATACTAAGGGAGGACACAATTATTAAAGCAAGAAAGGTCGAGTTCCCTACAAGACCAGCTGTCTCTAATGAGGCAAAGGTGAGGTTTTCTCCTTGCTATATCTGACGATATTTCTCATCTGACAATGATATGATAAATTGTCCCTATTTTGTTTTCCTTTTTGTGAGCATTATCAAGATAACCCGGAGGCCCAATTCAAAAATAAAAATGAAACCATTGACGTTGCCTACATTTTTAGGTCATTTGATGCCCCAAATGTGGTAAACTTTTGGTCACAGCTATGCTGTTCTTTTACTGATACATAATAATATGGCTTTGATTCAAGTTGAGTACATGCGCCAGTTGGCTCCATGCTTTATCTCAATCCCCATCAACTATTGATTACTAGCATGACAGTAGTCCATACATACCATGACCAGAAACATCTGGAGCATATCAAGATTCAGAATCAGGATACTAGAACTTAACTCTCGTGTCCGATATGACTACTCTGGGCATACTAGCTAATTGATGAAACAAAACTTCATTAAGCAATGTACAAGAAAAGTTAAATTTCAACAATATTTTCAGACTTATTAGGATTTTGTTATATTGCTCTTGCCACTGATTCTTGGATCGCTGTTTTATTGATTCTCTTTTCTATGTGTTTGAGCAGGAGTTTATTCGTCGTTGTTTAACATATAATCAAGCTGAGAGGCCAGATGTTTTGACTATCGCCCAAGACCCTTACTTGACATACACAAAGAAATGATACGAAGATGTTAATCACCACAACTTAGGCAGAGAGGTTCGTGTCTCTCGTCTATGTAAGTGGTTGCTCTCCTAATGTAG</genome_strand>
        <mrna_strand>ATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTG....................................................................................................................................GTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGA.................................................................................................................................................................................................................................GTTGATGTCTGGTCAGCTGGTATTTTGTTGTACCAAATGCTGTTTGGTAAACGCCCCTTTGGGCACGACCAAACACAAGAGAGAATACTAAGGGAGGACACAATTATTAAAGCAAGAAAGGTCGAGTTCCCTACAAGACCAGCTGTCTCTAATGAGGCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTATTCGTCGTTGTTTAACATATAATCAAGCTGAGAGGCCAGATGTTTTGACTATCGCCCAAGACCCTTACTTGACATACACAAAGAAATGATACGAAGATGTTAATCACCACAACTTAGGCAGAGAGGTTCGTGTCTCTCGTCTATGTAAGTGGTTGCTCTCCTAATGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254203" ref_strand="+" ref_description="SGN-E254203 [cLEG-34-N11]">
      <seq>gggagtacaacatccacaagactttggtgcaccatcacattgtgcggctttgggacatgtttgagatagatcagaacacattttgcactgtgttggagtactgtagtgggaaggaccttgatgcagttctcaaagcaacacctgtgttgccagaaagggaagcaagaatcatcattgtgcaggtttttcaaggccttatttacttaaataaaaagtcacagaggatcatccattatgatctgaagccagggaatgttctatttgatgagcttggtgttgctaaagttaccgattttggtctaagcaagatagtggaagatgatgttggatcccagggtatggaactcacatcccagggagcgggaacgtactggtatctacctcccgaatgctttgagctaagcaagacacctcttatatcctcgagagttgatgtctggtcagctggtattttgttgtaccaaatgctgtttggtaaacgcccctttgggcacgaccaaacacaagagagaatactaagggaggacacaattattaaagcaagaaaggtcgagttccctacaagaccagctgtctctaatgaggcaaaggagtttattcgtcgttgtttaacatataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="6414" stop="4147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6114" g_stop="6007" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6006" i_stop="5893" i_length="114">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5892" g_stop="5628" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="373" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5627" i_stop="5496" i_length="132">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5495" g_stop="5441" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="428" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5440" i_stop="5216" i_length="225">
            <donor d_prob="0.762" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5215" g_stop="5054" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="590" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5053" i_stop="4477" i_length="577">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4476" g_stop="4447" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="620" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E254203" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6114" e_stop="6007"/>
          <exon e_start="5892" e_stop="5628"/>
          <exon e_start="5495" e_stop="5441"/>
          <exon e_start="5215" e_stop="5054"/>
          <exon e_start="4476" e_stop="4447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTACAACATCCACAAGACTTTGGTGCACCATCACATTGTGCGGCTTTGGGACATTTTTGAGATAGATCAGAACACATTTTGCACTGTGTTGGAGTACTGTAGTGGTGTGTTTACTCCCTTTATTGCATAATCAATATGGAACAATTACAATTATGTTCAGTGCAATGAGGTATTTGAGGATTATCTCTCATATTAGTCATAAATGTTTTTGCCTGTAGGGAAGGACCTTGATGCAGTTCTCAAAGCAACACCTGTGTTGCCAGAAAGGGAAGCAAGAATCATCATTGTGCAGGTTTTTCAAGGCCTTATTTACTTAAATAAAAAGTCACAGAGGATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTGGTGAGTGGTAGATTTATGCTGTCATCATGTTTTTAGTGAGGTGCACTGTTCTGAACCTACTTTTGCTGTCATCTCTTGCCTTTGTAAAATTTTTACTAAGGTCCATTATTTCTGGATGTATTGTTTCTATAGGTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGAGTGAGTTCTCCTGCTTTGCTTTAACTTGTTGATAAAGTTAAATAGGACTCCACTGTAGACCAGGAGTACACAACATTTTTTACAAATAGTTTGTTTCTAAAGATCTTGGACTTAATGCTGTGTCTGCATCTTGATTGATGCATATTTAATCCTAAACATGATGAATGAACAGTTAACTATGTGTTTTTATGAACTAAACTCGTAAATTTATATTTATGTAACTAGGTTGATGTCTGGTCAGCTGGTATTTTGTTGTACCAAATGCTGTTTGGTAAACGCCCCTTTGGGCACGACCAAACACAAGAGAGAATACTAAGGGAGGACACAATTATTAAAGCAAGAAAGGTCGAGTTCCCTACAAGACCAGCTGTCTCTAATGAGGCAAAGGTGAGGTTTTCTCCTTGCTATATCTGACGATATTTCTCATCTGACAATGATATGATAAATTGTCCCTATTTTGTTTTCCTTTTTGTGAGCATTATCAAGATAACCCGGAGGCCCAATTCAAAAATAAAAATGAAACCATTGACGTTGCCTACATTTTTAGGTCATTTGATGCCCCAAATGTGGTAAACTTTTGGTCACAGCTATGCTGTTCTTTTACTGATACATAATAATATGGCTTTGATTCAAGTTGAGTACATGCGCCAGTTGGCTCCATGCTTTATCTCAATCCCCATCAACTATTGATTACTAGCATGACAGTAGTCCATACATACCATGACCAGAAACATCTGGAGCATATCAAGATTCAGAATCAGGATACTAGAACTTAACTCTCGTGTCCGATATGACTACTCTGGGCATACTAGCTAATTGATGAAACAAAACTTCATTAAGCAATGTACAAGAAAAGTTAAATTTCAACAATATTTTCAGACTTATTAGGATTTTGTTATATTGCTCTTGCCACTGATTCTTGGATCGCTGTTTTATTGATTCTCTTTTCTATGTGTTTGAGCAGGAGTTTATTCGTCGTTGTTTAACATATAAT</genome_strand>
        <mrna_strand>GGGAGTACAACATCCACAAGACTTTGGTGCACCATCACATTGTGCGGCTTTGGGACATGTTTGAGATAGATCAGAACACATTTTGCACTGTGTTGGAGTACTGTAGTG..................................................................................................................GGAAGGACCTTGATGCAGTTCTCAAAGCAACACCTGTGTTGCCAGAAAGGGAAGCAAGAATCATCATTGTGCAGGTTTTTCAAGGCCTTATTTACTTAAATAAAAAGTCACAGAGGATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTG....................................................................................................................................GTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGA.................................................................................................................................................................................................................................GTTGATGTCTGGTCAGCTGGTATTTTGTTGTACCAAATGCTGTTTGGTAAACGCCCCTTTGGGCACGACCAAACACAAGAGAGAATACTAAGGGAGGACACAATTATTAAAGCAAGAAAGGTCGAGTTCCCTACAAGACCAGCTGTCTCTAATGAGGCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTATTCGTCGTTGTTTAACATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378320" ref_strand="+" ref_description="SGN-E378320 [TUS-44-I2]">
      <seq>catccattatgatctgaagctcgggaatgttctatttgatgagcttggtgttgctaaagttaccgattttggtctaagcaagatagtggaagatgatgttggatcccagggtatggaactcacatcccagggagcgggaacgtactggtatctacctcccgaatgctttgagctaagcaagacacctcttatatcctcgagagttgatgtctggtcagctggtattttgttgtaccaaatgctgtttggtaaacgcccctttgggcacgaccaaacacaagagagaatactaagggaggacacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="6074" stop="4811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5774" g_stop="5628" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5627" i_stop="5496" i_length="132">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5495" g_stop="5441" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="202" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5440" i_stop="5216" i_length="225">
            <donor d_prob="0.762" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5215" g_stop="5111" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="307" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E378320" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5774" e_stop="5628"/>
          <exon e_start="5495" e_stop="5441"/>
          <exon e_start="5215" e_stop="5111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTGGTGAGTGGTAGATTTATGCTGTCATCATGTTTTTAGTGAGGTGCACTGTTCTGAACCTACTTTTGCTGTCATCTCTTGCCTTTGTAAAATTTTTACTAAGGTCCATTATTTCTGGATGTATTGTTTCTATAGGTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGAGTGAGTTCTCCTGCTTTGCTTTAACTTGTTGATAAAGTTAAATAGGACTCCACTGTAGACCAGGAGTACACAACATTTTTTACAAATAGTTTGTTTCTAAAGATCTTGGACTTAATGCTGTGTCTGCATCTTGATTGATGCATATTTAATCCTAAACATGATGAATGAACAGTTAACTATGTGTTTTTATGAACTAAACTCGTAAATTTATATTTATGTAACTAGGTTGATGTCTGGTCAGCTGGTATTTTGTTGTACCAAATGCTGTTTGGTAAACGCCCCTTTGGGCACGACCAAACACAAGAGAGAATACTAAGGGAGGACACAATT</genome_strand>
        <mrna_strand>CATCCATTATGATCTGAAGCTCGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTG....................................................................................................................................GTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGA.................................................................................................................................................................................................................................GTTGATGTCTGGTCAGCTGGTATTTTGTTGTACCAAATGCTGTTTGGTAAACGCCCCTTTGGGCACGACCAAACACAAGAGAGAATACTAAGGGAGGACACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239949" ref_strand="+" ref_description="SGN-E239949 [cLED-29-D7]">
      <seq>atcatccattatgatctgaagccagggaatgttctatttgatgagcttggtgttgctaaagttaccgattttggtctaagcaagatagtggaagatgatgttggatcccagggtatggaactcacatcccagggagcgggaacgtactggtatctacctcccgaatgctttgagctaagcaagacacctcttatatcctcgagagttgatgtctggtcagctggtattttgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="6076" stop="4885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5776" g_stop="5628" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5627" i_stop="5496" i_length="132">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5495" g_stop="5441" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="204" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5440" i_stop="5216" i_length="225">
            <donor d_prob="0.762" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5215" g_stop="5185" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="235" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E239949" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5776" e_stop="5628"/>
          <exon e_start="5495" e_stop="5441"/>
          <exon e_start="5215" e_stop="5185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTGGTGAGTGGTAGATTTATGCTGTCATCATGTTTTTAGTGAGGTGCACTGTTCTGAACCTACTTTTGCTGTCATCTCTTGCCTTTGTAAAATTTTTACTAAGGTCCATTATTTCTGGATGTATTGTTTCTATAGGTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGAGTGAGTTCTCCTGCTTTGCTTTAACTTGTTGATAAAGTTAAATAGGACTCCACTGTAGACCAGGAGTACACAACATTTTTTACAAATAGTTTGTTTCTAAAGATCTTGGACTTAATGCTGTGTCTGCATCTTGATTGATGCATATTTAATCCTAAACATGATGAATGAACAGTTAACTATGTGTTTTTATGAACTAAACTCGTAAATTTATATTTATGTAACTAGGTTGATGTCTGGTCAGCTGGTATTTTGTTGT</genome_strand>
        <mrna_strand>ATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTG....................................................................................................................................GTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGA.................................................................................................................................................................................................................................GTTGATGTCTGGTCAGCTGGTATTTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272725" ref_strand="+" ref_description="SGN-E272725 [cLEM-21-O12]">
      <seq>aggcaacatccacaagactttggtgcaccatcacattgtgcggctttgggacatttttgagatagatcagaacacattttgcactgtgttggagtactgtagtgggaagtaccttgatgcagttctcaaagcaacacctgtgttgccagaaagggaagcaagaatcatcattgtgcaggtttttcaaggccttatttacttaaataaaaagtcacagaggatcatccattatgatctgaagccagggaatgttctatttgatgagcttggtgttgctaaagttaccgattttggtctaagcaagatagtggaagatgatgttggatcccagggtatggaactcacatcccagggagcgggaacgtactggtatctacctcccgaatgctttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="6407" stop="5171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6111" g_stop="6007" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6006" i_stop="5893" i_length="114">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5892" g_stop="5628" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="369" r_length="265" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5627" i_stop="5496" i_length="132">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5495" g_stop="5471" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="394" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E272725" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6111" e_stop="6007"/>
          <exon e_start="5892" e_stop="5628"/>
          <exon e_start="5495" e_stop="5471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACAACATCCACAAGACTTTGGTGCACCATCACATTGTGCGGCTTTGGGACATTTTTGAGATAGATCAGAACACATTTTGCACTGTGTTGGAGTACTGTAGTGGTGTGTTTACTCCCTTTATTGCATAATCAATATGGAACAATTACAATTATGTTCAGTGCAATGAGGTATTTGAGGATTATCTCTCATATTAGTCATAAATGTTTTTGCCTGTAGGGAAGGACCTTGATGCAGTTCTCAAAGCAACACCTGTGTTGCCAGAAAGGGAAGCAAGAATCATCATTGTGCAGGTTTTTCAAGGCCTTATTTACTTAAATAAAAAGTCACAGAGGATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTGGTGAGTGGTAGATTTATGCTGTCATCATGTTTTTAGTGAGGTGCACTGTTCTGAACCTACTTTTGCTGTCATCTCTTGCCTTTGTAAAATTTTTACTAAGGTCCATTATTTCTGGATGTATTGTTTCTATAGGTATCTACCTCCCGAATGCTTTGAG</genome_strand>
        <mrna_strand>AG-GCAACATCCACAAGACTTTGGTGCACCATCACATTGTGCGGCTTTGGGACATTTTTGAGATAGATCAGAACACATTTTGCACTGTGTTGGAGTACTGTAGTG..................................................................................................................GGAAGTACCTTGATGCAGTTCTCAAAGCAACACCTGTGTTGCCAGAAAGGGAAGCAAGAATCATCATTGTGCAGGTTTTTCAAGGCCTTATTTACTTAAATAAAAAGTCACAGAGGATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTG....................................................................................................................................GTATCTACCTCCCGAATGCTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262476" ref_strand="+" ref_description="SGN-E262476 [cLEG-56-D4]">
      <seq>aaagccaaagagaacgaaaataatgtccgagttgctaatatctgtttcaaaagctgagagacaagaggctcggatgaaagtgcgccaggaatcattgagactgggcaatgtgggagtaatcagagctggaaccattatatctgaggcctgggaagatgggcaagcactaaaggacctgaatgctcaacttagaaacttattagaaacaaaagaagctattgaacggcagcgtaaattgttgaagaaacgacaaccagataaaagtgatggaggagatgtggagggaggtttgcaggaagaagattctttcattcaggatgaaatctacaaatctcgtttaactagcatcaaacgagaggaggatatgataatgcgtgagagagatcggtatgaactagagaaaggaaggctcattcgtgaaatgaaacgcatacgtgatgaagacggttctcgttttaacaattttcagattttgaaccaccgatatgcccctcttaaccttcttgggaaaggangatttagtgaggtctataaggcttttgacttggtagatcatagatatgttgcatgtaagctacatggactaaatgctcagtggagcgaagagaagaaagcaagttatatacgacatgcaatcagggagtacaacatccacaagactttggtgcaccatcacattgtgcggctttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="10099" stop="5761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9797" g_stop="9685" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="123" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9684" i_stop="8228" i_length="1457">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8227" g_stop="8161" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="190" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8160" i_stop="7660" i_length="501">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7659" g_stop="7593" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="257" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7592" i_stop="6735" i_length="858">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6734" g_stop="6637" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="355" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6636" i_stop="6524" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6523" g_stop="6344" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="535" r_length="180" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6343" i_stop="6218" i_length="126">
            <donor d_prob="0.960" d_score="0.92"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6217" g_stop="6061" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="692" r_length="157" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E262476" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9797" e_stop="9685"/>
          <exon e_start="8227" e_stop="8161"/>
          <exon e_start="7659" e_stop="7593"/>
          <exon e_start="6734" e_stop="6637"/>
          <exon e_start="6523" e_stop="6344"/>
          <exon e_start="6217" e_stop="6061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACAAGAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAGGTACAGCATTCTTATCAAGGTGTTATTTATAGTGAGCATTTTGCTGCTTGGTCTAGTATATTAAGTAAGTTTAACAGATGAGAAGGCATCAGGAGTGTGAAAAGTAAGAAAAGGTGCAACGAGTTCCCATAATTGTGTGTTCGCAGTTTCCTCTGAGGATCTCTCTTAAGTCGGGATTTATTTACCTTTGTTATGGATAATCTAAATACTGAACATATTGTCAGCCCCAATTAACTTGGAAGTGAGGCTTTATTATTGTTCTTGTAATAATAGTATGGTGACGGATTCCATGGTGCATATTATTTCATATAGCATATTGTAATTGACACAGCAAGAGAGTCAATCTATCTTCTGGACTCTGGATAAGCACTCTAGATAGTGAGGTTTCAGTATAAGTAGAAGTAACACAAGATATTGCACTGAATGTTAGCTTCCATGAAGAGGAATAATGGTGAAGTGCATTTGCCGGGATTGTGATGTCTAAATGCAAAAGATTTAGATGCCTCAGATCAGTCTTGCAGTAAAATGGCATAATAGATTCAAGTGTACTAGATAGAAACACAGTTGGATGAATACTTTTTTGAGGAGATAAAAAAAGGGAATCAAAGTAACATGGCTTAAATAGAAGTTTAATACACGAGTGATATCCAAAATGGGGTTAATGTTGGTCCCTAAGGTCCAACATAGATGAAAGTGTAAAATGTGAATGTTAAAATGGATGTACAAGATTTGAGGAATAATGGTGAGGTGAAATTTGATGGAATTGTGATGTCTAAATGCAAAAATTTTAGATACCTCAGTTCAGTCTTGCAAGAAAATGGCATAATAGATGCGAATGTACATAGAAACAAAAAAGGATGATTACTTATCAAAAGAATTCTGGTGTCTTATGTGATAGAAAGGTGACACTAAGGTAAGTTCTACAGAGCAGTAGTTAGACCAGCTTCGTTGTGCGGGGTGGAGTGTTGGTTAGTCAAGAACTCTCATGTCCAAAAGATGGAAGTTGCGGAATTGAGTATGCTAAGATAGATGTGTAGGGGCTTACTAGCAGAGATATGGCCAGAAATGAAGATATTCAGGTTAAGGTGGAAGTGGCCTCCATATGTCAAGAGGAGATGCATAGACGCCCCAGTGAGGATGTGTGAGAGGTCGACGTTGGAGGGTCTGAGGAGAGGTAGGGTAGGCTAAATAAATATTGGGGAGAGGTGATTAGGCAGAACATGACAAGCCTTAAGCTTACCGTGGACATGAGTCTTAATAGGAGAGTAATTGATTAATTGCTGGGATTTTGTTGGTGATAACTATGTAACAAGTATACTAATAGAACTCTAGATTATTAATAGGCCGTATGCCCATCCTCTAAGTATCAATTTATTTTTCGTGTTATCAAATATCATGATTTGAACCTATTTATTTTTGCGACTGCTGATCTTTTTCTGTTCTTTGGTTAATTGCAGAGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTTGTATGTTCCGTATTTTGGTGGTCTGGCAAGGGACTGCTTGTTTTGCAGTTTCATTTTATGGATATATTAATATATCCATGCTGACAACTAACAGTCACTGCCTGTCCATTTAGCTTTTAAAGTACAATAGAACTTCAGCTTATGTCCTAACAACCATGCCCACAACAAAGGAGAGATTTGAACTAGAAAAAATTAGTATATTGAGAATCTGAGAGTTGAATCAAGAATTTTAATAATAGTTTATATTGCCTGGATCTTTGGACACACAGGAGTTGCTTGTCAAGGAAAGAGGCGTTTTACGTATTAAAAGGAAGACCAAGTAACTTTGCAGACTTACCTGACTTAACTTCAGTTAGATTGTTTGCAAGCTGAATAAATCCAATATGGAAACTGATCCTATATGCTATTTAGTTTTCGGTGTCTCCATATTAATTACACTGCTAAACATTGCTTATATCCTAGATCCAAGAGGTGTTATTGCTAATGAATCTTTTTTTACAGAGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACAACCAGGTGAAGTTTTCCGTTTGAATCATACTTTCTCATGTTCCTTCTCTTAGATAGATTTATGGTGTTATTTTGGTGAATGAGTGGATTATTTTTTTTTTGAAACTGGTAACTTTGTGAATGAGTGGATTTTGTCCCAAAAAATTGTCCAAATCTGTTTGTAAGATCGCTAATATTTCTTTTACTATATTTCTGGTCTTGAATCTGCTCTTCATTAAATGGCTGCATGACATTCCAAACGCAAGTTGTGTGATTTTCAAGTTCACTATCGTCTTAGCAGATGACATTTGAATAAAGCTAGAGTTGTAAGCAATCCATGCTTAATTTGTATGCATCTCTGGCTTGAGTGTTGTTTCAGCAACACTTCACTGGAGGTTCTGTCTTAATATAGTTGCCTCAGTCTTATCAGCTTGTATTTGGTAGTCAACGTGGAAAGAAAGGAGGAACCTTAGATGTCATCAGAACAAGAGCAACACTATCAGAAGATGAAAATGAATTGTCTTGTGTTGTTTCATTTTTGGTGTAAACAGGAGTATATGGAAGATCTAGAATCAGTTATGAATATCTTAGGATCCCCGTAATTTTTGTCATAGGATTGAAGATCTTCTGTTATACTCTATTTAATCTGTAATTAGGAATCTGTAACATGTTGTGGCAGGTTGACTTTTTGGAAATAGAAATACAAATCGTTACCTTCTCAAAAAAAAAAAAAGACTCCCATGTTGGCTTCTTGTTCATGACTGTTTGTCATTAGTTCAGCAGGAATAGCTGTTCATTTGATTTTTCATTTTCTTCGATTGCCCAAAACTATGTTTCTTGTATTATAAAAGGTTACTAACAATAAGGTTTACCCTACCATTGCAGATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGAGTAAGTTTCTCTTCCTTCTCTAAATATTTATCTACCTACCAGTTCTGTCATTTCTGGTGCTTTGTTTCTAAAATACACTCCATGCTTCACACCGTCATATTCATTTTCATTAGGAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGATTTTGAACCACCGATATG-CCCTCTTAAACCTTCTTGGGAAAGGAGGATTTAGTGAGGTCTATAAGGTAGGAATCTGAAAGTGGGTGTTAAATATATTTTCATTCACCAGATGACATTGTACACCTCTTTTATGTATTAACATATTGAGAAAAATATCCTTCCATCCACTTCAAATTGCAAAATTCTGGCAGGCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAGCTACATGGACTAAATGCTCAGTGGAGCGAAGAGAAGAAGCAAAGTTATATACGACATGCAATCAGGGAGTACAACATCCACAAGACTTTGGTGCACCATCACATTGTGCGGCTTTGGG</genome_strand>
        <mrna_strand>AGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACAAGAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACAACCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGA.................................................................................................................GAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGATTTTGAACCACCGATATGCCCCTCTT-AACCTTCTTGGGAAAGGANGATTTAGTGAGGTCTATAAG..............................................................................................................................GCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAGCTACATGGACTAAATGCTCAGTGGAGCGAAGAGAAGAAAGCAAGTTATATACGACATGCAATCAGGGAGTACAACATCCACAAGACTTTGGTGCACCATCACATTGTGCGGCTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214153" ref_strand="+" ref_description="SGN-E214153 [cLEC-77-A3]">
      <seq>gaggctcggatgaaagtgcgccaggaatcattgagactgggcaatgtgggagtaatcagagctggaaccattatatctgaggcctgggaagatgggcaagcactaaaggacctgaatgctcaacttagaaacttattagaaacaaaagaagctattgaacggcagcgtaaattgttgaagaaacgacaaccagataaaagtgatggaggagatgtggagggaggtttgcaggaagaagattctttcattcaggatgaaatctacaaatctcgtttaactagcatcaaacgagaggaggatatgataatgcgtgagagagatcggtatgaactagagaaaggaaggctcattcgtgaaatgaaacgcatacgtgatgaagacggttctcgttttaacaattttcagaattttgaccaccgatatgccctctttaaccttcttgggaaaggangatttagtgaggtctataaggcttttgacttggtagatcatagatatgttgcatgtaagctacatggactaaatgctcagtggagcgaagagaagaagcaaagtatatacgacatgcaatcaggnagtacaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="10043" stop="5801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9743" g_stop="9685" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9684" i_stop="8228" i_length="1457">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8227" g_stop="8161" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="126" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8160" i_stop="7660" i_length="501">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7659" g_stop="7593" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="193" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7592" i_stop="6735" i_length="858">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6734" g_stop="6637" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="291" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6636" i_stop="6524" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6523" g_stop="6344" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="471" r_length="180" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6343" i_stop="6218" i_length="126">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6217" g_stop="6101" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="587" r_length="116" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E214153" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9743" e_stop="9685"/>
          <exon e_start="8227" e_stop="8161"/>
          <exon e_start="7659" e_stop="7593"/>
          <exon e_start="6734" e_stop="6637"/>
          <exon e_start="6523" e_stop="6344"/>
          <exon e_start="6217" e_stop="6101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAGGTACAGCATTCTTATCAAGGTGTTATTTATAGTGAGCATTTTGCTGCTTGGTCTAGTATATTAAGTAAGTTTAACAGATGAGAAGGCATCAGGAGTGTGAAAAGTAAGAAAAGGTGCAACGAGTTCCCATAATTGTGTGTTCGCAGTTTCCTCTGAGGATCTCTCTTAAGTCGGGATTTATTTACCTTTGTTATGGATAATCTAAATACTGAACATATTGTCAGCCCCAATTAACTTGGAAGTGAGGCTTTATTATTGTTCTTGTAATAATAGTATGGTGACGGATTCCATGGTGCATATTATTTCATATAGCATATTGTAATTGACACAGCAAGAGAGTCAATCTATCTTCTGGACTCTGGATAAGCACTCTAGATAGTGAGGTTTCAGTATAAGTAGAAGTAACACAAGATATTGCACTGAATGTTAGCTTCCATGAAGAGGAATAATGGTGAAGTGCATTTGCCGGGATTGTGATGTCTAAATGCAAAAGATTTAGATGCCTCAGATCAGTCTTGCAGTAAAATGGCATAATAGATTCAAGTGTACTAGATAGAAACACAGTTGGATGAATACTTTTTTGAGGAGATAAAAAAAGGGAATCAAAGTAACATGGCTTAAATAGAAGTTTAATACACGAGTGATATCCAAAATGGGGTTAATGTTGGTCCCTAAGGTCCAACATAGATGAAAGTGTAAAATGTGAATGTTAAAATGGATGTACAAGATTTGAGGAATAATGGTGAGGTGAAATTTGATGGAATTGTGATGTCTAAATGCAAAAATTTTAGATACCTCAGTTCAGTCTTGCAAGAAAATGGCATAATAGATGCGAATGTACATAGAAACAAAAAAGGATGATTACTTATCAAAAGAATTCTGGTGTCTTATGTGATAGAAAGGTGACACTAAGGTAAGTTCTACAGAGCAGTAGTTAGACCAGCTTCGTTGTGCGGGGTGGAGTGTTGGTTAGTCAAGAACTCTCATGTCCAAAAGATGGAAGTTGCGGAATTGAGTATGCTAAGATAGATGTGTAGGGGCTTACTAGCAGAGATATGGCCAGAAATGAAGATATTCAGGTTAAGGTGGAAGTGGCCTCCATATGTCAAGAGGAGATGCATAGACGCCCCAGTGAGGATGTGTGAGAGGTCGACGTTGGAGGGTCTGAGGAGAGGTAGGGTAGGCTAAATAAATATTGGGGAGAGGTGATTAGGCAGAACATGACAAGCCTTAAGCTTACCGTGGACATGAGTCTTAATAGGAGAGTAATTGATTAATTGCTGGGATTTTGTTGGTGATAACTATGTAACAAGTATACTAATAGAACTCTAGATTATTAATAGGCCGTATGCCCATCCTCTAAGTATCAATTTATTTTTCGTGTTATCAAATATCATGATTTGAACCTATTTATTTTTGCGACTGCTGATCTTTTTCTGTTCTTTGGTTAATTGCAGAGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTTGTATGTTCCGTATTTTGGTGGTCTGGCAAGGGACTGCTTGTTTTGCAGTTTCATTTTATGGATATATTAATATATCCATGCTGACAACTAACAGTCACTGCCTGTCCATTTAGCTTTTAAAGTACAATAGAACTTCAGCTTATGTCCTAACAACCATGCCCACAACAAAGGAGAGATTTGAACTAGAAAAAATTAGTATATTGAGAATCTGAGAGTTGAATCAAGAATTTTAATAATAGTTTATATTGCCTGGATCTTTGGACACACAGGAGTTGCTTGTCAAGGAAAGAGGCGTTTTACGTATTAAAAGGAAGACCAAGTAACTTTGCAGACTTACCTGACTTAACTTCAGTTAGATTGTTTGCAAGCTGAATAAATCCAATATGGAAACTGATCCTATATGCTATTTAGTTTTCGGTGTCTCCATATTAATTACACTGCTAAACATTGCTTATATCCTAGATCCAAGAGGTGTTATTGCTAATGAATCTTTTTTTACAGAGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACAACCAGGTGAAGTTTTCCGTTTGAATCATACTTTCTCATGTTCCTTCTCTTAGATAGATTTATGGTGTTATTTTGGTGAATGAGTGGATTATTTTTTTTTTGAAACTGGTAACTTTGTGAATGAGTGGATTTTGTCCCAAAAAATTGTCCAAATCTGTTTGTAAGATCGCTAATATTTCTTTTACTATATTTCTGGTCTTGAATCTGCTCTTCATTAAATGGCTGCATGACATTCCAAACGCAAGTTGTGTGATTTTCAAGTTCACTATCGTCTTAGCAGATGACATTTGAATAAAGCTAGAGTTGTAAGCAATCCATGCTTAATTTGTATGCATCTCTGGCTTGAGTGTTGTTTCAGCAACACTTCACTGGAGGTTCTGTCTTAATATAGTTGCCTCAGTCTTATCAGCTTGTATTTGGTAGTCAACGTGGAAAGAAAGGAGGAACCTTAGATGTCATCAGAACAAGAGCAACACTATCAGAAGATGAAAATGAATTGTCTTGTGTTGTTTCATTTTTGGTGTAAACAGGAGTATATGGAAGATCTAGAATCAGTTATGAATATCTTAGGATCCCCGTAATTTTTGTCATAGGATTGAAGATCTTCTGTTATACTCTATTTAATCTGTAATTAGGAATCTGTAACATGTTGTGGCAGGTTGACTTTTTGGAAATAGAAATACAAATCGTTACCTTCTCAAAAAAAAAAAAAGACTCCCATGTTGGCTTCTTGTTCATGACTGTTTGTCATTAGTTCAGCAGGAATAGCTGTTCATTTGATTTTTCATTTTCTTCGATTGCCCAAAACTATGTTTCTTGTATTATAAAAGGTTACTAACAATAAGGTTTACCCTACCATTGCAGATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGAGTAAGTTTCTCTTCCTTCTCTAAATATTTATCTACCTACCAGTTCTGTCATTTCTGGTGCTTTGTTTCTAAAATACACTCCATGCTTCACACCGTCATATTCATTTTCATTAGGAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGATTTTGAACCACCGATATGCCCTCTTAAACCTTCTTGGGAAAGGAGGATTTAGTGAGGTCTATAAGGTAGGAATCTGAAAGTGGGTGTTAAATATATTTTCATTCACCAGATGACATTGTACACCTCTTTTATGTATTAACATATTGAGAAAAATATCCTTCCATCCACTTCAAATTGCAAAATTCTGGCAGGCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAGCTACATGGACTAAATGCTCAGTGGAGCGAAGAGAAGAAGCAAAGTTATATACGACATGCAATCAGGGAGTACAACATC</genome_strand>
        <mrna_strand>GAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACAACCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGA.................................................................................................................GAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGAATTTTGACCACCGATATGCCCTCTTTAACCTTCTTGGGAAAGGANGATTTAGTGAGGTCTATAAG..............................................................................................................................GCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAGCTACATGGACTAAATGCTCAGTGGAGCGAAGAGAAGAAGCAAAG-TATATACGACATGCAATCAGGNAGTACAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259321" ref_strand="+" ref_description="SGN-E259321 [cLEG-43-K5]">
      <seq>aaagccaaagagaacgaaaataatgtccgagttgctaatatctgtttcaaaagctgagagacaagaggctcggatgaaagtgcgccaggaatcattgagactgggcaatgtgggagtaatcagagctggaaccattatatctgaggcctgggaagatgggcaagcactaaaggacctgaatgctcaacttagaaacttattagaaacaaaagaagctattgaacggcagcgtaaattgttgaagaaacgacaaccagataaaagtgatggaggagatgtggagggaggtttgcaggaagaagattctttcattcaggatgaaatctacaaatctcgtttaactagcatcaaacgagaggaggatatgataatgcgtgagagagatcggtatgaactagagaaaggaaggctcattcgtgaaatgaaacgcatacgtgatgaagacggttctcgttttaacaattttcagattttgaaccaccgatatgccctcttaaaccttcttgggaaaggaggatttagtgaggtctataaggcttttgacttggtagatcatagatatgttgcatgtaagctacatggactaaatgctcagtggagcgaagagaagaagcaaagttatatacgacatgcaatcagggagtacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="10099" stop="5803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9797" g_stop="9685" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="123" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9684" i_stop="8228" i_length="1457">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8227" g_stop="8161" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="190" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8160" i_stop="7660" i_length="501">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7659" g_stop="7593" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="257" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7592" i_stop="6735" i_length="858">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6734" g_stop="6637" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="355" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6636" i_stop="6524" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6523" g_stop="6344" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="535" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6343" i_stop="6218" i_length="126">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6217" g_stop="6103" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="650" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E259321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9797" e_stop="9685"/>
          <exon e_start="8227" e_stop="8161"/>
          <exon e_start="7659" e_stop="7593"/>
          <exon e_start="6734" e_stop="6637"/>
          <exon e_start="6523" e_stop="6344"/>
          <exon e_start="6217" e_stop="6103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACAAGAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAGGTACAGCATTCTTATCAAGGTGTTATTTATAGTGAGCATTTTGCTGCTTGGTCTAGTATATTAAGTAAGTTTAACAGATGAGAAGGCATCAGGAGTGTGAAAAGTAAGAAAAGGTGCAACGAGTTCCCATAATTGTGTGTTCGCAGTTTCCTCTGAGGATCTCTCTTAAGTCGGGATTTATTTACCTTTGTTATGGATAATCTAAATACTGAACATATTGTCAGCCCCAATTAACTTGGAAGTGAGGCTTTATTATTGTTCTTGTAATAATAGTATGGTGACGGATTCCATGGTGCATATTATTTCATATAGCATATTGTAATTGACACAGCAAGAGAGTCAATCTATCTTCTGGACTCTGGATAAGCACTCTAGATAGTGAGGTTTCAGTATAAGTAGAAGTAACACAAGATATTGCACTGAATGTTAGCTTCCATGAAGAGGAATAATGGTGAAGTGCATTTGCCGGGATTGTGATGTCTAAATGCAAAAGATTTAGATGCCTCAGATCAGTCTTGCAGTAAAATGGCATAATAGATTCAAGTGTACTAGATAGAAACACAGTTGGATGAATACTTTTTTGAGGAGATAAAAAAAGGGAATCAAAGTAACATGGCTTAAATAGAAGTTTAATACACGAGTGATATCCAAAATGGGGTTAATGTTGGTCCCTAAGGTCCAACATAGATGAAAGTGTAAAATGTGAATGTTAAAATGGATGTACAAGATTTGAGGAATAATGGTGAGGTGAAATTTGATGGAATTGTGATGTCTAAATGCAAAAATTTTAGATACCTCAGTTCAGTCTTGCAAGAAAATGGCATAATAGATGCGAATGTACATAGAAACAAAAAAGGATGATTACTTATCAAAAGAATTCTGGTGTCTTATGTGATAGAAAGGTGACACTAAGGTAAGTTCTACAGAGCAGTAGTTAGACCAGCTTCGTTGTGCGGGGTGGAGTGTTGGTTAGTCAAGAACTCTCATGTCCAAAAGATGGAAGTTGCGGAATTGAGTATGCTAAGATAGATGTGTAGGGGCTTACTAGCAGAGATATGGCCAGAAATGAAGATATTCAGGTTAAGGTGGAAGTGGCCTCCATATGTCAAGAGGAGATGCATAGACGCCCCAGTGAGGATGTGTGAGAGGTCGACGTTGGAGGGTCTGAGGAGAGGTAGGGTAGGCTAAATAAATATTGGGGAGAGGTGATTAGGCAGAACATGACAAGCCTTAAGCTTACCGTGGACATGAGTCTTAATAGGAGAGTAATTGATTAATTGCTGGGATTTTGTTGGTGATAACTATGTAACAAGTATACTAATAGAACTCTAGATTATTAATAGGCCGTATGCCCATCCTCTAAGTATCAATTTATTTTTCGTGTTATCAAATATCATGATTTGAACCTATTTATTTTTGCGACTGCTGATCTTTTTCTGTTCTTTGGTTAATTGCAGAGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTTGTATGTTCCGTATTTTGGTGGTCTGGCAAGGGACTGCTTGTTTTGCAGTTTCATTTTATGGATATATTAATATATCCATGCTGACAACTAACAGTCACTGCCTGTCCATTTAGCTTTTAAAGTACAATAGAACTTCAGCTTATGTCCTAACAACCATGCCCACAACAAAGGAGAGATTTGAACTAGAAAAAATTAGTATATTGAGAATCTGAGAGTTGAATCAAGAATTTTAATAATAGTTTATATTGCCTGGATCTTTGGACACACAGGAGTTGCTTGTCAAGGAAAGAGGCGTTTTACGTATTAAAAGGAAGACCAAGTAACTTTGCAGACTTACCTGACTTAACTTCAGTTAGATTGTTTGCAAGCTGAATAAATCCAATATGGAAACTGATCCTATATGCTATTTAGTTTTCGGTGTCTCCATATTAATTACACTGCTAAACATTGCTTATATCCTAGATCCAAGAGGTGTTATTGCTAATGAATCTTTTTTTACAGAGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACAACCAGGTGAAGTTTTCCGTTTGAATCATACTTTCTCATGTTCCTTCTCTTAGATAGATTTATGGTGTTATTTTGGTGAATGAGTGGATTATTTTTTTTTTGAAACTGGTAACTTTGTGAATGAGTGGATTTTGTCCCAAAAAATTGTCCAAATCTGTTTGTAAGATCGCTAATATTTCTTTTACTATATTTCTGGTCTTGAATCTGCTCTTCATTAAATGGCTGCATGACATTCCAAACGCAAGTTGTGTGATTTTCAAGTTCACTATCGTCTTAGCAGATGACATTTGAATAAAGCTAGAGTTGTAAGCAATCCATGCTTAATTTGTATGCATCTCTGGCTTGAGTGTTGTTTCAGCAACACTTCACTGGAGGTTCTGTCTTAATATAGTTGCCTCAGTCTTATCAGCTTGTATTTGGTAGTCAACGTGGAAAGAAAGGAGGAACCTTAGATGTCATCAGAACAAGAGCAACACTATCAGAAGATGAAAATGAATTGTCTTGTGTTGTTTCATTTTTGGTGTAAACAGGAGTATATGGAAGATCTAGAATCAGTTATGAATATCTTAGGATCCCCGTAATTTTTGTCATAGGATTGAAGATCTTCTGTTATACTCTATTTAATCTGTAATTAGGAATCTGTAACATGTTGTGGCAGGTTGACTTTTTGGAAATAGAAATACAAATCGTTACCTTCTCAAAAAAAAAAAAAGACTCCCATGTTGGCTTCTTGTTCATGACTGTTTGTCATTAGTTCAGCAGGAATAGCTGTTCATTTGATTTTTCATTTTCTTCGATTGCCCAAAACTATGTTTCTTGTATTATAAAAGGTTACTAACAATAAGGTTTACCCTACCATTGCAGATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGAGTAAGTTTCTCTTCCTTCTCTAAATATTTATCTACCTACCAGTTCTGTCATTTCTGGTGCTTTGTTTCTAAAATACACTCCATGCTTCACACCGTCATATTCATTTTCATTAGGAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGATTTTGAACCACCGATATGCCCTCTTAAACCTTCTTGGGAAAGGAGGATTTAGTGAGGTCTATAAGGTAGGAATCTGAAAGTGGGTGTTAAATATATTTTCATTCACCAGATGACATTGTACACCTCTTTTATGTATTAACATATTGAGAAAAATATCCTTCCATCCACTTCAAATTGCAAAATTCTGGCAGGCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAGCTACATGGACTAAATGCTCAGTGGAGCGAAGAGAAGAAGCAAAGTTATATACGACATGCAATCAGGGAGTACAACA</genome_strand>
        <mrna_strand>AGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACAAGAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACAACCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGA.................................................................................................................GAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGATTTTGAACCACCGATATGCCCTCTTAAACCTTCTTGGGAAAGGAGGATTTAGTGAGGTCTATAAG..............................................................................................................................GCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAGCTACATGGACTAAATGCTCAGTGGAGCGAAGAGAAGAAGCAAAGTTATATACGACATGCAATCAGGGAGTACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551108" ref_strand="+" ref_description="SGN-E551108 [TUS-55-E24]">
      <seq>gcccaagagaacgaaaataatgtccgagttgctaatatctgtttcaaaagctgagagaccagaggctcggatgaaagtgcgcccggaatcattgagactgggcaatgtgggagtaatcagagctggaaccattatatctgaggcctgggaagatgggcaagcactaaaggacctgaatgctcaacttagaaacttattagaaacaaaagaagctattgaacggcagcgtaaattgttgaagaaacgaccaccagataaaagtgatggaggagatgtggagggaggtttgcaggaagaagattctttcattcaggatgaaatctacaaatctcgtttaactagcatcaaacgagaggaggatatgataatgcgtgagagagatcggtatgaactagagaaaggaaggctcattcgtgaaatgaaacgcatacgtgatgaagacggttctcgttttaacaattttcagattttgaaccaccgatatgccctcttaaaccttcttgggaaaggaggatttagtgaggtctataaggcttttgacttggtagatcatagatatgttgcatgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="10099" stop="5879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9797" g_stop="9685" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="120" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9684" i_stop="8228" i_length="1457">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8227" g_stop="8161" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="187" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8160" i_stop="7660" i_length="501">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7659" g_stop="7593" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="254" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7592" i_stop="6735" i_length="858">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6734" g_stop="6637" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="352" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6636" i_stop="6524" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6523" g_stop="6344" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="532" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6343" i_stop="6218" i_length="126">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6217" g_stop="6179" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="571" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E551108" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9797" e_stop="9685"/>
          <exon e_start="8227" e_stop="8161"/>
          <exon e_start="7659" e_stop="7593"/>
          <exon e_start="6734" e_stop="6637"/>
          <exon e_start="6523" e_stop="6344"/>
          <exon e_start="6217" e_stop="6179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACAAGAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAGGTACAGCATTCTTATCAAGGTGTTATTTATAGTGAGCATTTTGCTGCTTGGTCTAGTATATTAAGTAAGTTTAACAGATGAGAAGGCATCAGGAGTGTGAAAAGTAAGAAAAGGTGCAACGAGTTCCCATAATTGTGTGTTCGCAGTTTCCTCTGAGGATCTCTCTTAAGTCGGGATTTATTTACCTTTGTTATGGATAATCTAAATACTGAACATATTGTCAGCCCCAATTAACTTGGAAGTGAGGCTTTATTATTGTTCTTGTAATAATAGTATGGTGACGGATTCCATGGTGCATATTATTTCATATAGCATATTGTAATTGACACAGCAAGAGAGTCAATCTATCTTCTGGACTCTGGATAAGCACTCTAGATAGTGAGGTTTCAGTATAAGTAGAAGTAACACAAGATATTGCACTGAATGTTAGCTTCCATGAAGAGGAATAATGGTGAAGTGCATTTGCCGGGATTGTGATGTCTAAATGCAAAAGATTTAGATGCCTCAGATCAGTCTTGCAGTAAAATGGCATAATAGATTCAAGTGTACTAGATAGAAACACAGTTGGATGAATACTTTTTTGAGGAGATAAAAAAAGGGAATCAAAGTAACATGGCTTAAATAGAAGTTTAATACACGAGTGATATCCAAAATGGGGTTAATGTTGGTCCCTAAGGTCCAACATAGATGAAAGTGTAAAATGTGAATGTTAAAATGGATGTACAAGATTTGAGGAATAATGGTGAGGTGAAATTTGATGGAATTGTGATGTCTAAATGCAAAAATTTTAGATACCTCAGTTCAGTCTTGCAAGAAAATGGCATAATAGATGCGAATGTACATAGAAACAAAAAAGGATGATTACTTATCAAAAGAATTCTGGTGTCTTATGTGATAGAAAGGTGACACTAAGGTAAGTTCTACAGAGCAGTAGTTAGACCAGCTTCGTTGTGCGGGGTGGAGTGTTGGTTAGTCAAGAACTCTCATGTCCAAAAGATGGAAGTTGCGGAATTGAGTATGCTAAGATAGATGTGTAGGGGCTTACTAGCAGAGATATGGCCAGAAATGAAGATATTCAGGTTAAGGTGGAAGTGGCCTCCATATGTCAAGAGGAGATGCATAGACGCCCCAGTGAGGATGTGTGAGAGGTCGACGTTGGAGGGTCTGAGGAGAGGTAGGGTAGGCTAAATAAATATTGGGGAGAGGTGATTAGGCAGAACATGACAAGCCTTAAGCTTACCGTGGACATGAGTCTTAATAGGAGAGTAATTGATTAATTGCTGGGATTTTGTTGGTGATAACTATGTAACAAGTATACTAATAGAACTCTAGATTATTAATAGGCCGTATGCCCATCCTCTAAGTATCAATTTATTTTTCGTGTTATCAAATATCATGATTTGAACCTATTTATTTTTGCGACTGCTGATCTTTTTCTGTTCTTTGGTTAATTGCAGAGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTTGTATGTTCCGTATTTTGGTGGTCTGGCAAGGGACTGCTTGTTTTGCAGTTTCATTTTATGGATATATTAATATATCCATGCTGACAACTAACAGTCACTGCCTGTCCATTTAGCTTTTAAAGTACAATAGAACTTCAGCTTATGTCCTAACAACCATGCCCACAACAAAGGAGAGATTTGAACTAGAAAAAATTAGTATATTGAGAATCTGAGAGTTGAATCAAGAATTTTAATAATAGTTTATATTGCCTGGATCTTTGGACACACAGGAGTTGCTTGTCAAGGAAAGAGGCGTTTTACGTATTAAAAGGAAGACCAAGTAACTTTGCAGACTTACCTGACTTAACTTCAGTTAGATTGTTTGCAAGCTGAATAAATCCAATATGGAAACTGATCCTATATGCTATTTAGTTTTCGGTGTCTCCATATTAATTACACTGCTAAACATTGCTTATATCCTAGATCCAAGAGGTGTTATTGCTAATGAATCTTTTTTTACAGAGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACAACCAGGTGAAGTTTTCCGTTTGAATCATACTTTCTCATGTTCCTTCTCTTAGATAGATTTATGGTGTTATTTTGGTGAATGAGTGGATTATTTTTTTTTTGAAACTGGTAACTTTGTGAATGAGTGGATTTTGTCCCAAAAAATTGTCCAAATCTGTTTGTAAGATCGCTAATATTTCTTTTACTATATTTCTGGTCTTGAATCTGCTCTTCATTAAATGGCTGCATGACATTCCAAACGCAAGTTGTGTGATTTTCAAGTTCACTATCGTCTTAGCAGATGACATTTGAATAAAGCTAGAGTTGTAAGCAATCCATGCTTAATTTGTATGCATCTCTGGCTTGAGTGTTGTTTCAGCAACACTTCACTGGAGGTTCTGTCTTAATATAGTTGCCTCAGTCTTATCAGCTTGTATTTGGTAGTCAACGTGGAAAGAAAGGAGGAACCTTAGATGTCATCAGAACAAGAGCAACACTATCAGAAGATGAAAATGAATTGTCTTGTGTTGTTTCATTTTTGGTGTAAACAGGAGTATATGGAAGATCTAGAATCAGTTATGAATATCTTAGGATCCCCGTAATTTTTGTCATAGGATTGAAGATCTTCTGTTATACTCTATTTAATCTGTAATTAGGAATCTGTAACATGTTGTGGCAGGTTGACTTTTTGGAAATAGAAATACAAATCGTTACCTTCTCAAAAAAAAAAAAAGACTCCCATGTTGGCTTCTTGTTCATGACTGTTTGTCATTAGTTCAGCAGGAATAGCTGTTCATTTGATTTTTCATTTTCTTCGATTGCCCAAAACTATGTTTCTTGTATTATAAAAGGTTACTAACAATAAGGTTTACCCTACCATTGCAGATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGAGTAAGTTTCTCTTCCTTCTCTAAATATTTATCTACCTACCAGTTCTGTCATTTCTGGTGCTTTGTTTCTAAAATACACTCCATGCTTCACACCGTCATATTCATTTTCATTAGGAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGATTTTGAACCACCGATATGCCCTCTTAAACCTTCTTGGGAAAGGAGGATTTAGTGAGGTCTATAAGGTAGGAATCTGAAAGTGGGTGTTAAATATATTTTCATTCACCAGATGACATTGTACACCTCTTTTATGTATTAACATATTGAGAAAAATATCCTTCCATCCACTTCAAATTGCAAAATTCTGGCAGGCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAG</genome_strand>
        <mrna_strand>AGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACCAGAGGCTCGGATGAAAGTGCGCCCGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACCACCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGA.................................................................................................................GAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGATTTTGAACCACCGATATGCCCTCTTAAACCTTCTTGGGAAAGGAGGATTTAGTGAGGTCTATAAG..............................................................................................................................GCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688907" ref_strand="+" ref_description="SGN-E688907 [t3_tus_55_E24]">
      <seq>ccacgcccaagagaacgaaaataatgtccgagttgctaatatctgtttcaaaagctgagagaccagaggctcggatgaaagtgcgcccggaatcattgagactgggcaatgtgggagtaatcagagctggaaccattatatctgaggcctgggaagatgggcaagcactaaaggacctgaatgctcaacttagaaacttattagaaacaaaagaagctattgaacggcagcgtaaattgttgaagaaacgaccaccagataaaagtgatggaggagatgtggagggaggtttgcaggaagaagattctttcattcaggatgaaatctacaaatctcgtttaactagcatcaaacgagaggaggatatgataatgcgtgagagagatcggtatgaactagagaaaggaaggctcattcgtgaaatgaaacgcatacgtgatgaagacggttctcgttttaacaattttcagattttgaaccaccgatatgccctcttaaaccttcttgggaaaggaggatttagtgaggtctataaggcttttgacttggtagatcatagatatgttgcatgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="10099" stop="5879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9797" g_stop="9685" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="124" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9684" i_stop="8228" i_length="1457">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8227" g_stop="8161" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="191" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8160" i_stop="7660" i_length="501">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7659" g_stop="7593" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="258" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7592" i_stop="6735" i_length="858">
            <donor d_prob="0.919" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6734" g_stop="6637" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="356" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6636" i_stop="6524" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6523" g_stop="6344" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="536" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6343" i_stop="6218" i_length="126">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6217" g_stop="6179" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="575" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E688907" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9797" e_stop="9685"/>
          <exon e_start="8227" e_stop="8161"/>
          <exon e_start="7659" e_stop="7593"/>
          <exon e_start="6734" e_stop="6637"/>
          <exon e_start="6523" e_stop="6344"/>
          <exon e_start="6217" e_stop="6179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACAAGAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAGGTACAGCATTCTTATCAAGGTGTTATTTATAGTGAGCATTTTGCTGCTTGGTCTAGTATATTAAGTAAGTTTAACAGATGAGAAGGCATCAGGAGTGTGAAAAGTAAGAAAAGGTGCAACGAGTTCCCATAATTGTGTGTTCGCAGTTTCCTCTGAGGATCTCTCTTAAGTCGGGATTTATTTACCTTTGTTATGGATAATCTAAATACTGAACATATTGTCAGCCCCAATTAACTTGGAAGTGAGGCTTTATTATTGTTCTTGTAATAATAGTATGGTGACGGATTCCATGGTGCATATTATTTCATATAGCATATTGTAATTGACACAGCAAGAGAGTCAATCTATCTTCTGGACTCTGGATAAGCACTCTAGATAGTGAGGTTTCAGTATAAGTAGAAGTAACACAAGATATTGCACTGAATGTTAGCTTCCATGAAGAGGAATAATGGTGAAGTGCATTTGCCGGGATTGTGATGTCTAAATGCAAAAGATTTAGATGCCTCAGATCAGTCTTGCAGTAAAATGGCATAATAGATTCAAGTGTACTAGATAGAAACACAGTTGGATGAATACTTTTTTGAGGAGATAAAAAAAGGGAATCAAAGTAACATGGCTTAAATAGAAGTTTAATACACGAGTGATATCCAAAATGGGGTTAATGTTGGTCCCTAAGGTCCAACATAGATGAAAGTGTAAAATGTGAATGTTAAAATGGATGTACAAGATTTGAGGAATAATGGTGAGGTGAAATTTGATGGAATTGTGATGTCTAAATGCAAAAATTTTAGATACCTCAGTTCAGTCTTGCAAGAAAATGGCATAATAGATGCGAATGTACATAGAAACAAAAAAGGATGATTACTTATCAAAAGAATTCTGGTGTCTTATGTGATAGAAAGGTGACACTAAGGTAAGTTCTACAGAGCAGTAGTTAGACCAGCTTCGTTGTGCGGGGTGGAGTGTTGGTTAGTCAAGAACTCTCATGTCCAAAAGATGGAAGTTGCGGAATTGAGTATGCTAAGATAGATGTGTAGGGGCTTACTAGCAGAGATATGGCCAGAAATGAAGATATTCAGGTTAAGGTGGAAGTGGCCTCCATATGTCAAGAGGAGATGCATAGACGCCCCAGTGAGGATGTGTGAGAGGTCGACGTTGGAGGGTCTGAGGAGAGGTAGGGTAGGCTAAATAAATATTGGGGAGAGGTGATTAGGCAGAACATGACAAGCCTTAAGCTTACCGTGGACATGAGTCTTAATAGGAGAGTAATTGATTAATTGCTGGGATTTTGTTGGTGATAACTATGTAACAAGTATACTAATAGAACTCTAGATTATTAATAGGCCGTATGCCCATCCTCTAAGTATCAATTTATTTTTCGTGTTATCAAATATCATGATTTGAACCTATTTATTTTTGCGACTGCTGATCTTTTTCTGTTCTTTGGTTAATTGCAGAGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTTGTATGTTCCGTATTTTGGTGGTCTGGCAAGGGACTGCTTGTTTTGCAGTTTCATTTTATGGATATATTAATATATCCATGCTGACAACTAACAGTCACTGCCTGTCCATTTAGCTTTTAAAGTACAATAGAACTTCAGCTTATGTCCTAACAACCATGCCCACAACAAAGGAGAGATTTGAACTAGAAAAAATTAGTATATTGAGAATCTGAGAGTTGAATCAAGAATTTTAATAATAGTTTATATTGCCTGGATCTTTGGACACACAGGAGTTGCTTGTCAAGGAAAGAGGCGTTTTACGTATTAAAAGGAAGACCAAGTAACTTTGCAGACTTACCTGACTTAACTTCAGTTAGATTGTTTGCAAGCTGAATAAATCCAATATGGAAACTGATCCTATATGCTATTTAGTTTTCGGTGTCTCCATATTAATTACACTGCTAAACATTGCTTATATCCTAGATCCAAGAGGTGTTATTGCTAATGAATCTTTTTTTACAGAGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACAACCAGGTGAAGTTTTCCGTTTGAATCATACTTTCTCATGTTCCTTCTCTTAGATAGATTTATGGTGTTATTTTGGTGAATGAGTGGATTATTTTTTTTTTGAAACTGGTAACTTTGTGAATGAGTGGATTTTGTCCCAAAAAATTGTCCAAATCTGTTTGTAAGATCGCTAATATTTCTTTTACTATATTTCTGGTCTTGAATCTGCTCTTCATTAAATGGCTGCATGACATTCCAAACGCAAGTTGTGTGATTTTCAAGTTCACTATCGTCTTAGCAGATGACATTTGAATAAAGCTAGAGTTGTAAGCAATCCATGCTTAATTTGTATGCATCTCTGGCTTGAGTGTTGTTTCAGCAACACTTCACTGGAGGTTCTGTCTTAATATAGTTGCCTCAGTCTTATCAGCTTGTATTTGGTAGTCAACGTGGAAAGAAAGGAGGAACCTTAGATGTCATCAGAACAAGAGCAACACTATCAGAAGATGAAAATGAATTGTCTTGTGTTGTTTCATTTTTGGTGTAAACAGGAGTATATGGAAGATCTAGAATCAGTTATGAATATCTTAGGATCCCCGTAATTTTTGTCATAGGATTGAAGATCTTCTGTTATACTCTATTTAATCTGTAATTAGGAATCTGTAACATGTTGTGGCAGGTTGACTTTTTGGAAATAGAAATACAAATCGTTACCTTCTCAAAAAAAAAAAAAGACTCCCATGTTGGCTTCTTGTTCATGACTGTTTGTCATTAGTTCAGCAGGAATAGCTGTTCATTTGATTTTTCATTTTCTTCGATTGCCCAAAACTATGTTTCTTGTATTATAAAAGGTTACTAACAATAAGGTTTACCCTACCATTGCAGATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGAGTAAGTTTCTCTTCCTTCTCTAAATATTTATCTACCTACCAGTTCTGTCATTTCTGGTGCTTTGTTTCTAAAATACACTCCATGCTTCACACCGTCATATTCATTTTCATTAGGAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGATTTTGAACCACCGATATGCCCTCTTAAACCTTCTTGGGAAAGGAGGATTTAGTGAGGTCTATAAGGTAGGAATCTGAAAGTGGGTGTTAAATATATTTTCATTCACCAGATGACATTGTACACCTCTTTTATGTATTAACATATTGAGAAAAATATCCTTCCATCCACTTCAAATTGCAAAATTCTGGCAGGCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAG</genome_strand>
        <mrna_strand>AGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACCAGAGGCTCGGATGAAAGTGCGCCCGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACCACCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGA.................................................................................................................GAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGATTTTGAACCACCGATATGCCCTCTTAAACCTTCTTGGGAAAGGAGGATTTAGTGAGGTCTATAAG..............................................................................................................................GCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316556" ref_strand="+" ref_description="SGN-E316556 [cTOA-25-H15]">
      <seq>tagagaatacagaaacaagcaaagtggcttcagatgggaatagacgaaaacaaagccgtagtaggggacaaactaattctggtagagggcgtggttcccgagttggtgatcagaccaggttacaagcagtttctgcgtcaaatgatctgttcgagaactcttacaagaagttgcaggatagtttgcctaaagagcaacttgggcataatggacagactgcatcagaagaggagatcactactttacgggcaaaaattgtggctttggaggaagagcttaggaaatcccgtcaagaggccacagattatcagtatcggtgtcaacagctggaaaaggagctgaaggatcttaaagattacgagcagcagacaaagccaaagagaacgaaaataatgtccgagttgctaatatctgtttcaaaagctgagagacaagaggctcggatgaaagtgcgccaggaatcattgagactgggcaatgtgggagtaatcagagctggaaccattatatctgaggcctgggaagatgggcaagcactaaaggacctgaatgctcaacttgtatgttccgtattttggtggtctggcaagggactgcttgttttgcagtttcattttatggatatattaatatatccatgctgacaactaacagtcactgcctgtccatttagcttttaaagtacaatagaacttcagcttatgtcctaacaaccatgcccacaacaaaggagagatttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="13724" stop="7677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13424" g_stop="13255" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13254" i_stop="12499" i_length="756">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12498" g_stop="12442" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="227" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12441" i_stop="12245" i_length="197">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12244" g_stop="12137" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="335" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12136" i_stop="10635" i_length="1502">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10634" g_stop="10590" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="380" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10589" i_stop="9798" i_length="792">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9797" g_stop="9685" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="493" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9684" i_stop="8228" i_length="1457">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8227" g_stop="7977" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="744" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E316556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13424" e_stop="13255"/>
          <exon e_start="12498" e_stop="12442"/>
          <exon e_start="12244" e_stop="12137"/>
          <exon e_start="10634" e_stop="10590"/>
          <exon e_start="9797" e_stop="9685"/>
          <exon e_start="8227" e_stop="7977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAATACAGAAACAAGCAAAGTGGCTTCAGATGGGAATAGACGAAAACAAAGCCGTAGTAGGGGACAAACTAATTCTGGTAGAGGGCGTGGTTCCCGAGTTGGTGATCAGACCAGGTTACAAGCAGTTTCTGCGTCAAATGATCTGTTCGAGAACTCTTACAAGAAGGTGAGTTTTTTCCTGGCATGATTTAAGGTTTTGTTTTAGGATAGCATGATTTAATGTTTGTTTTAGGATTGCATGATTATCAGTAATGATTGAGCTTGAAAGGATAAGTTTGAAAATACAGGCAAATGTTTGTCCAAAAACGACACATGGGAATTGGGAAATTAAAACAAAACAAGAGAAGCTCCTGCTTTATAATGTCAATTCTGAAATGTTTAAAGCTGAATATACATATAAGAGTTTGCGCTGATGATTTCTACTGTTATTCTTTATTGTACCTTTACCAATGTTAAAATCTGGACTCGTGCTGTTAGTTTCCACATTCTATATATTGAAATTAATTTAGTGTTCATTGTTGTAACGTGTTCCCTATTTTCCTAATTCTTCCTTTATACCTTAGCTACCATTGTTTCAGTATATTGTGTGCTCTATTTTGTAGATGAGATCTTTTAACAATGATTTTCTGCTTGATTTAGTTACCCTTGTATACCTTTTCTGTTGTGTAGTTATATAGGACACTAGCGAGTACTTGTGGGCATATTGAGCATGTAATACATATAATCCACTGCAACCCAAAGGCCCTAATACTTAATTTGTGAAAGTCAGTTTGATTTAGAAAGTATCAAATGCAAATAGATTGTAATTTTGTTAGGTAATAGATGCATATCTTGTAACTTTACAATGAAAAGGATGATAGATTGCGTAGAATTGGCAGTTGTTTGTTAGTGGACTAACACATTAAAATTTTGCTTGTTGTAGTTGCAGGATAGTTTGCCTAAAGAGCAACTTGGGCATAATGGACAGACTGCATCAGAAGTATGGCTTTAGTTATAGTTTTCAGATTTCTTCCATACTTTTCTACTGTCAAAAGTGCATTCTAACCTACAATTTCTATCTGGGGGAATTTATGCCATAAAAAGGGTTTACAACTCATGAATTTTATGCAGTCACTCTTTGGTACTATTTATAAATTTCTAATTTGTTGAAATGATGTGGAATGCCCTTGACATTAGGAGGAGATCACTACTTTACGGGCAAAAATTGTGGCTTTGGAGGAAGAGCTTAGGAAATCCCGTCAAGAGGCCACAGATTATCAGTATCGGTGTCAACAGCTGGAAAAGGTACAACTTCTTTAGGTTACCTAGAGTACTGCAAATAATCCCGATATCGAATGATGTACTAATTCAATACTGGATAACAACATATGAATTAGTATGTACATGTGTAAGTTCTCATAAATGCCTGAAAATTTGCTATATCTGGTACCTGTTTAGTTAACCATCTTTTGTTATCACTTGCATGTTCCCAATAATGTTTGCTAATATTGATTTAAAGCTATAACAAGGTGTTTGAAATAAACAATTATGTTTAGTAGGGGAACATAAAATTTGTTACTCTCTCTAGTCCACAGATTAAGAAACCAGTTAACAACATTAACTCAGAGGGTTATTTGACACCCTTTCCCTCTCCTCAACATAAGTTAAGAAGTATTAAAAGACCTTTTAGAAATTTTTTCAGATCATTTACTAGACAAGAGTAAAGTTGGAGAAAATATATACGTTTTTTTAAATCACCTATTTTGGACCAAGTTAGAAAGGCTAGAAAATCACTTACTTTGGACAGGAAAGAATAGCAATTTATCTCATAGTATGCCTCATTTTAAACTCTTAAAATTGTTCTTTATTTGAGTTACAGAAAAGCTTTTGAGTTACAGAAAAGCTTACTAGTCTGAATTTTATTTTGATTTCTAATCCTATATGGTAATTATAGAACATATGATGATAAACTGAATATGAATTCGGATAGAACAAATGTATAAATCGAGGATATTATTAGACACAAATGCTTATTTTATTTAAAATCAATCAACTAGAGGAGTGATTTTGACATTGGAAAACCTTAGGAAGCGAAAAGTTGTTTTTATTAGTTGGTGTTACTTACGCAAGGAGAGGGGTGAAGACGTGGATCATTTTCTCCTATATTGTAGCCTAGCCACGGTGTTATGATGGAATATTTTCAGATGGTTTAGTATTTTATGGGCAATGCCAAGATCTGTAAAGGAGCTGATGTTCAACTGGAAGAGAGGAAGAATGTCGAGAAGACACAAGGTGTGTAATGTAGCTCCACTAGCTTTGATGTGGGTTATTTGGAAGGAGAGAAACATGAGTCATTGAGGGAGTAGAGATGAGTTCTGCTCAGTTGAGGAGTATTCACCGTCCCTTGTGTTCTTTTAGTGCACCCATGTACTACCTGCTTGTATAGAAGCTCAGGTGTCTTTTTTACAGAACCATATCTTTTTGTAGGTTCTCTACTTTTTGGTATACCTCTTGTCTATGGCCAATTTCAGTCTTTCATTCAATGAAACCTTATTTACTTGATCAAAATAAGATAAAATAAAACCAAACAAACATTCTAGATTTATGTTCAAAATTTTAAACTACTAAGCAAAAGTCTGATTACAAATGCAAATAATTCAGAAATTATTATCTATTGAATTACAATCCCTAAATTATAATCTGTATATAACTTGTCTGTGAACCAAATGACCTGTTAGTTGATTTGTCTTTGAATAGAATTTTCAATTGCAACTGACCTTTCAGCATTGCATACTTAAATTATACAGGAGCTGAAGGATCTTAAAGATTACGAGCAGCAGACAAAGCCAAAGGTGTGCTTCATTGGTTATTTTACTTCTTTTCATTGGTCAAGTTCTGTTTCTGCCCTAGAAATAATCGGTAGTGTTTGTATTTAGTTTGGGAGGTTACCTTTGCGAACCGCATGACCAAATATTTGTGGCACTAACTAGCTACATTGGTGTGCTTGTCGCCAAATCAAATTTTTTTGTCAGCTCTGATTGGTACTATATTTGCTTAAGTCATATATCTTTCGAGTTATCATCATATGTCTGAATATGCTATGGAGGAATGTATCTGTTAATATGATTTACCTGATGGAGTAAACCTACAAAGTTGGTGTATTCAGCTTGACCACTTCAGCAGAACAGGCATTATTCAAACTAAAAACCAGAGTTTTCTACATTATGTAGAATTATGGAGTATCGAATAGGCTGTAGTACCAAAGCACTTTGCATATATATGGTATGCATGTATACACACACATTTCGGGCACACCCGTAGCTATTTCATTTTCCTGGCAAAATATTGTTTTCAAACTTAGCTTTGTTGTTTCTAAAATATTTCTTTTTGTTGGTCCATTTGTGGACATATTTACTATCTCATGCAAGTTGTGTGAACATCACTATTTGGCTATCCTGCCAAAATATTGCTGTCAAATTCTGCTTTAGTTGTTTACAATTTATTCTTAGCTGTGTCCCATTGTGTCTGCAATAATCTCGTGTCAGCAAGCAGGTAAAAATACCAAGTTGATATAAAAAGGTTGATATTATACCTGTTTATTGGTATTCCCTCATGGAAATGGTTCATTTTTTTCTTGTCTGCAGAGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACAAGAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAGGTACAGCATTCTTATCAAGGTGTTATTTATAGTGAGCATTTTGCTGCTTGGTCTAGTATATTAAGTAAGTTTAACAGATGAGAAGGCATCAGGAGTGTGAAAAGTAAGAAAAGGTGCAACGAGTTCCCATAATTGTGTGTTCGCAGTTTCCTCTGAGGATCTCTCTTAAGTCGGGATTTATTTACCTTTGTTATGGATAATCTAAATACTGAACATATTGTCAGCCCCAATTAACTTGGAAGTGAGGCTTTATTATTGTTCTTGTAATAATAGTATGGTGACGGATTCCATGGTGCATATTATTTCATATAGCATATTGTAATTGACACAGCAAGAGAGTCAATCTATCTTCTGGACTCTGGATAAGCACTCTAGATAGTGAGGTTTCAGTATAAGTAGAAGTAACACAAGATATTGCACTGAATGTTAGCTTCCATGAAGAGGAATAATGGTGAAGTGCATTTGCCGGGATTGTGATGTCTAAATGCAAAAGATTTAGATGCCTCAGATCAGTCTTGCAGTAAAATGGCATAATAGATTCAAGTGTACTAGATAGAAACACAGTTGGATGAATACTTTTTTGAGGAGATAAAAAAAGGGAATCAAAGTAACATGGCTTAAATAGAAGTTTAATACACGAGTGATATCCAAAATGGGGTTAATGTTGGTCCCTAAGGTCCAACATAGATGAAAGTGTAAAATGTGAATGTTAAAATGGATGTACAAGATTTGAGGAATAATGGTGAGGTGAAATTTGATGGAATTGTGATGTCTAAATGCAAAAATTTTAGATACCTCAGTTCAGTCTTGCAAGAAAATGGCATAATAGATGCGAATGTACATAGAAACAAAAAAGGATGATTACTTATCAAAAGAATTCTGGTGTCTTATGTGATAGAAAGGTGACACTAAGGTAAGTTCTACAGAGCAGTAGTTAGACCAGCTTCGTTGTGCGGGGTGGAGTGTTGGTTAGTCAAGAACTCTCATGTCCAAAAGATGGAAGTTGCGGAATTGAGTATGCTAAGATAGATGTGTAGGGGCTTACTAGCAGAGATATGGCCAGAAATGAAGATATTCAGGTTAAGGTGGAAGTGGCCTCCATATGTCAAGAGGAGATGCATAGACGCCCCAGTGAGGATGTGTGAGAGGTCGACGTTGGAGGGTCTGAGGAGAGGTAGGGTAGGCTAAATAAATATTGGGGAGAGGTGATTAGGCAGAACATGACAAGCCTTAAGCTTACCGTGGACATGAGTCTTAATAGGAGAGTAATTGATTAATTGCTGGGATTTTGTTGGTGATAACTATGTAACAAGTATACTAATAGAACTCTAGATTATTAATAGGCCGTATGCCCATCCTCTAAGTATCAATTTATTTTTCGTGTTATCAAATATCATGATTTGAACCTATTTATTTTTGCGACTGCTGATCTTTTTCTGTTCTTTGGTTAATTGCAGAGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTTGTATGTTCCGTATTTTGGTGGTCTGGCAAGGGACTGCTTGTTTTGCAGTTTCATTTTATGGATATATTAATATATCCATGCTGACAACTAACAGTCACTGCCTGTCCATTTAGCTTTTAAAGTACAATAGAACTTCAGCTTATGTCCTAACAACCATGCCCACAACAAAGGAGAGATTTGAACT</genome_strand>
        <mrna_strand>TAGAGAATACAGAAACAAGCAAAGTGGCTTCAGATGGGAATAGACGAAAACAAAGCCGTAGTAGGGGACAAACTAATTCTGGTAGAGGGCGTGGTTCCCGAGTTGGTGATCAGACCAGGTTACAAGCAGTTTCTGCGTCAAATGATCTGTTCGAGAACTCTTACAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGATAGTTTGCCTAAAGAGCAACTTGGGCATAATGGACAGACTGCATCAGAA.....................................................................................................................................................................................................GAGGAGATCACTACTTTACGGGCAAAAATTGTGGCTTTGGAGGAAGAGCTTAGGAAATCCCGTCAAGAGGCCACAGATTATCAGTATCGGTGTCAACAGCTGGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGAAGGATCTTAAAGATTACGAGCAGCAGACAAAGCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACAAGAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTTGTATGTTCCGTATTTTGGTGGTCTGGCAAGGGACTGCTTGTTTTGCAGTTTCATTTTATGGATATATTAATATATCCATGCTGACAACTAACAGTCACTGCCTGTCCATTTAGCTTTTAAAGTACAATAGAACTTCAGCTTATGTCCTAACAACCATGCCCACAACAAAGGAGAGATTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325453" ref_strand="+" ref_description="SGN-E325453 [cTOC-1-N19]">
      <seq>tttttttttagtacttccctctctttgattctttccattttcctcaagaaaagggaattaaattaaccctaaatctcctctgtcccatttccttacaagaagttgtcaaaagggttgaattgatttctctgatgctgccgttttcttgattgtacaactctttttgactaaaagggtgtcttagaatcgcttcaaatcatcaaaaagacaccaaagttcacttttttaggttgtttgttgttctgggtcagttgtgaatgatctgatacctttgttgttttttttaagaatggctgatgatatggtcattcattttgcatccaattcttctaaccaatctgaccagtctttgcctacaaaaattgcgaaacttgaggcaagaatggtggggaaagcttcatctgttacatctcaagctaattcctggtcttccccagctatgtttgagaatgttgctgagcctgccaccgtctctagtgattcagatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="16807" stop="15717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16507" g_stop="16017" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E325453" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16507" e_stop="16017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTTTAGTACTTCCCTCTCTTTGATTCTTTCCATTTTCCTCAAGAAAAGGGAATTAAATTAACCCTAAATCTCCTCTGTCCCATTTCCTTACAAGAAGTTGTCAAAAGGGTTGAATTGATTTCTCTGATGCTGCCGTTTTCTTGATTGTACAACTCTTTTTGACTAAAAGGGTGTCTTAGAATCGCTTCAAATCATCAAAAAGACACCAAAGTTCACTTTTTTAGGTTGTTTGTTGTTCTGGGTCAGTTGTGAATGATCTGATACCTTTGTTGTTTTTTTTAAGAATGGCTGATGATATGGTCATTCATTTTGCATCCAATTCTTCTAACCAATCTGACCAGTCTTTGCCTACAAAAATTGCGAAACTTGAGGCAAGAATGGTGGGGAAAGCTTCATCTGTTACATCTCAAGCTAATTCCTGGTCTTCCCCAGCTATGTTTGAGAATGTTGCTGAGCCTGCCACCGTCTCTAGTGATTCAGATGATG</genome_strand>
        <mrna_strand>TTTTTTTTTAGTACTTCCCTCTCTTTGATTCTTTCCATTTTCCTCAAGAAAAGGGAATTAAATTAACCCTAAATCTCCTCTGTCCCATTTCCTTACAAGAAGTTGTCAAAAGGGTTGAATTGATTTCTCTGATGCTGCCGTTTTCTTGATTGTACAACTCTTTTTGACTAAAAGGGTGTCTTAGAATCGCTTCAAATCATCAAAAAGACACCAAAGTTCACTTTTTTAGGTTGTTTGTTGTTCTGGGTCAGTTGTGAATGATCTGATACCTTTGTTGTTTTTTTTAAGAATGGCTGATGATATGGTCATTCATTTTGCATCCAATTCTTCTAACCAATCTGACCAGTCTTTGCCTACAAAAATTGCGAAACTTGAGGCAAGAATGGTGGGGAAAGCTTCATCTGTTACATCTCAAGCTAATTCCTGGTCTTCCCCAGCTATGTTTGAGAATGTTGCTGAGCCTGCCACCGTCTCTAGTGATTCAGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338828" ref_strand="+" ref_description="SGN-E338828 [cTOE-21-C1]">
      <seq>ttctttccattttcctcaagaaaagggaattagattaaccctaaatctcctctgtcccatttccttacaagaagttgtcaaaagggttgaattgatttctctgatgctgccgttttcttgattgtacaactctttttgactaaaagggtgtcttagaatcgcttcaaatcatcaaaaagacaccaaagttcacttttttaggttgtttgttgttctgggtcagttgtgaatgatctgatacctttgttgttttttttaagaatggctgatgatatggtcattcattttgcatccaattcttctaaccaatctgaccagtctttgcctacaaaaattgcgaaacttgaggcaagaatggtggggaaagcttcatctgttacatctcaagctaattcctggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="16779" stop="15779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16479" g_stop="16079" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E338828" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16479" e_stop="16079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCCATTTTCCTCAAGAAAAGGGAATTAAATTAACCCTAAATCTCCTCTGTCCCATTTCCTTACAAGAAGTTGTCAAAAGGGTTGAATTGATTTCTCTGATGCTGCCGTTTTCTTGATTGTACAACTCTTTTTGACTAAAAGGGTGTCTTAGAATCGCTTCAAATCATCAAAAAGACACCAAAGTTCACTTTTTTAGGTTGTTTGTTGTTCTGGGTCAGTTGTGAATGATCTGATACCTTTGTTGTTTTTTTTAAGAATGGCTGATGATATGGTCATTCATTTTGCATCCAATTCTTCTAACCAATCTGACCAGTCTTTGCCTACAAAAATTGCGAAACTTGAGGCAAGAATGGTGGGGAAAGCTTCATCTGTTACATCTCAAGCTAATTCCTGGTC</genome_strand>
        <mrna_strand>TTCTTTCCATTTTCCTCAAGAAAAGGGAATTAGATTAACCCTAAATCTCCTCTGTCCCATTTCCTTACAAGAAGTTGTCAAAAGGGTTGAATTGATTTCTCTGATGCTGCCGTTTTCTTGATTGTACAACTCTTTTTGACTAAAAGGGTGTCTTAGAATCGCTTCAAATCATCAAAAAGACACCAAAGTTCACTTTTTTAGGTTGTTTGTTGTTCTGGGTCAGTTGTGAATGATCTGATACCTTTGTTGTTTTTTTTAAGAATGGCTGATGATATGGTCATTCATTTTGCATCCAATTCTTCTAACCAATCTGACCAGTCTTTGCCTACAAAAATTGCGAAACTTGAGGCAAGAATGGTGGGGAAAGCTTCATCTGTTACATCTCAAGCTAATTCCTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726757" ref_strand="+" ref_description="SGN-E726757 [LA12CH12]">
      <seq>ggcggtcatcgtgctaaggattgccctgaaaaaagccaaagaggatctgagagttcaagaatgtgtttaaaatgtggggattctgggcatgatatgctgtcatgctggaataactattctgctgatgatctaaaggaaatacaatgttacatttgtaagagttttggtcatctttgctgtgcaagctaccccaatggtggtccaagtgaaatatcctgttacagatgtggtctactaggccataccggtttggcatgcacaggatctcgtggggaaactagtggtacatggcatcttagttcttgttttaggtgtggcgaagaagggcattttgcacgagaatgcactaattccaatatagtcaataagtggaatcgggaatcatcaacccccaagaagaaagtgttcaaggaaagaaaggaaaattatgagttccaatctgctcctcatgaatatggcaaggcaagaaaaaagaacacacaatacggagaaggatatgcatcagggtacaatacaaaacatagagctggttggatcaccgatgatcctgaagacttccctcgatccaatggttggagatctccttcaactcctggacataagagagccaggacatccaacttcagttctggtgatcattcttctgtttcttattcatcaagaaagtccaacaggctcgactttaacgattcaaatccttatggatcagttaaacatcatcatcaccataggttttcagcttcgcgatttggcaacagcagtcatgacgggaggagaaattatgaatggtaacagaaaccctttatcatctctttttttttggatgaccaaatctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="19943" stop="18143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19643" g_stop="19509" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19508" i_stop="19421" i_length="88">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.715" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19420" g_stop="19304" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="252" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19303" i_stop="19188" i_length="116">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19187" g_stop="19080" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="360" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19079" i_stop="18920" i_length="160">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18919" g_stop="18443" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="838" r_length="478" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E726757" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19643" e_stop="19509"/>
          <exon e_start="19420" e_stop="19304"/>
          <exon e_start="19187" e_stop="19080"/>
          <exon e_start="18919" e_stop="18443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGTCATCGTGCTAAGGATTGCCCTGAAAAAAGCCAAGGAGGATCTGAGAGTTCAAGAATGTGTTTAAAATGTGGGGATTCTGGGCATGATATGCTGTCATGCTGGAATAACTATTCTGCTGATGATCTAAAGGTATTGCTGAAGAAACTTTTAACTTGAAATTGATTTTTTTTTTCGTGCTTAATCATCACTTTTCCTGTTTTCATCTTGACCTCTACAGGAAATACAATGTTACATTTGTAAGAGTTTTGGTCATCTTTGCTGTGCAAGCTACCCCAATGGTGGTCCAAGTGAAATATCCTGTTACAGATGTGGTCTACTAGGCCATACCGGTTTGGTAAGTAGTTGTACATGAAACGTCACGACTCCTGTGTGTGTGGGGTCTGTGTTTCTCTTGTCTTGTTCAGGAATCCTTTTAATGCTGCAATTTCAACTTGCACATGTTCAATGCAGGCATGCACAGGATCTCGTGGGGAAACTAGTGGTACATGGCATCTTAGTTCTTGTTTTAGGTGTGGCGAAGAAGGGCATTTTGCACGAGAATGCACTAATTCCAATATAGTGAGTTATATATCTGTGATTGACGACTGTCTTTTGCTCTCCCTTCCATCCCCTTTTCTCCAAATTGTCTTTCTCTTCCTTCATAGCTCATTTCTTGCTTCCTACTCTAAATCTCTTCGTTGCAATTTTACCTTATTGTGTGTTTATTGTATGTCAAAAGGTCAATAAGTGGAATCGGGAATCATCAACCCCCAAGAAGAAAGTGTTCAAGGAAAGAAAGGAAAATTATGAGTTCCAATCTGCTCCTCATGAATATGGCAAGGCAAGAAAAAAGAACACACAATACGGAGAAGGATATGCATCAGGGTACAATACAAAACATAGAGCTGGTTGGATCACCGATGATTCTGAAGACTTCCCTCAATCCAATGGTTGGAGATCTCCTTCAACTCCTGGACATAAGAGAGCCAGGACATCCAACTTCGGTTCTGGTGATCATTCTTCTGTTTCTTATTCATCTAGAAAGTCCAACAGGCTCGACTTTAACGATTCAACTCCTTATGGATCAGTCAAACATCATAATCACCATAGGTTTTCAGCTTCGCGATTTGGCAACAGTAGTCATGATGGGAGGAGAAATTATGAATGGTAACAGAAACCCTTTATCATCTC-TTTTTTTTGGATGACCAAATCTCCA</genome_strand>
        <mrna_strand>GGCGGTCATCGTGCTAAGGATTGCCCTGAAAAAAGCCAAAGAGGATCTGAGAGTTCAAGAATGTGTTTAAAATGTGGGGATTCTGGGCATGATATGCTGTCATGCTGGAATAACTATTCTGCTGATGATCTAAAG........................................................................................GAAATACAATGTTACATTTGTAAGAGTTTTGGTCATCTTTGCTGTGCAAGCTACCCCAATGGTGGTCCAAGTGAAATATCCTGTTACAGATGTGGTCTACTAGGCCATACCGGTTTG....................................................................................................................GCATGCACAGGATCTCGTGGGGAAACTAGTGGTACATGGCATCTTAGTTCTTGTTTTAGGTGTGGCGAAGAAGGGCATTTTGCACGAGAATGCACTAATTCCAATATA................................................................................................................................................................GTCAATAAGTGGAATCGGGAATCATCAACCCCCAAGAAGAAAGTGTTCAAGGAAAGAAAGGAAAATTATGAGTTCCAATCTGCTCCTCATGAATATGGCAAGGCAAGAAAAAAGAACACACAATACGGAGAAGGATATGCATCAGGGTACAATACAAAACATAGAGCTGGTTGGATCACCGATGATCCTGAAGACTTCCCTCGATCCAATGGTTGGAGATCTCCTTCAACTCCTGGACATAAGAGAGCCAGGACATCCAACTTCAGTTCTGGTGATCATTCTTCTGTTTCTTATTCATCAAGAAAGTCCAACAGGCTCGACTTTAACGATTCAAATCCTTATGGATCAGTTAAACATCATCATCACCATAGGTTTTCAGCTTCGCGATTTGGCAACAGCAGTCATGACGGGAGGAGAAATTATGAATGGTAACAGAAACCCTTTATCATCTCTTTTTTTTTGGATGACCAAATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379534" ref_strand="+" ref_description="SGN-E379534 [TUS-3-M9]">
      <seq>aaagaagaagaagaagaaggaaaagaatgttgagattcctgaagaccccgtatcaagtggaatagataaggggtttcagagcttctgtagtgatatgtctatggtggatggaatgaaagaaggtgaaaatgtggttagtatagatatgaatgttgttgacaatgcagctcaacagaatcccgttgatatgtctaatggtgtcgtcctacgaaggcttcttcgggggcccagatactttgatcctccagatagcagttgggggacgtgttataattgtggtgaagagggtcatacgacagtcagttgtacttcagccaaacgcaaaaaaccatgttttgtttgtgggagttttgatcataattctaaacagtgtacaaagggcaaggagtgtttcatttgcaagaagggcggtcatcgtgctaaggattgccctgaaaaaagccaaggaggatctgagagttcaagaatgtgtttaaaatgtggggattctgggcatgatatgctgtcatgctggaataactattctgctgatgatctaaaggaaatacaatgttacatttgttagagttttggtcatctttgctgtgcaagctacccccatggtggtccaagtgaaatatcctgttacagatgtggtctactaggccataccggtttggcatgcacaggatctcgtggggaaactagtggtacatggcatcttagttcttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="22851" stop="18833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22551" g_stop="22503" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22502" i_stop="22368" i_length="135">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22367" g_stop="22314" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="103" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22313" i_stop="20955" i_length="1359">
            <donor d_prob="0.565" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20954" g_stop="20838" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="220" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20837" i_stop="20733" i_length="105">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20732" g_stop="20574" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="379" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20573" i_stop="19671" i_length="903">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19670" g_stop="19509" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="541" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19508" i_stop="19421" i_length="88">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.715" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19420" g_stop="19304" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="658" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19303" i_stop="19188" i_length="116">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19187" g_stop="19133" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="713" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E379534" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22551" e_stop="22503"/>
          <exon e_start="22367" e_stop="22314"/>
          <exon e_start="20954" e_stop="20838"/>
          <exon e_start="20732" e_stop="20574"/>
          <exon e_start="19670" e_stop="19509"/>
          <exon e_start="19420" e_stop="19304"/>
          <exon e_start="19187" e_stop="19133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAAGAAGAAGAAGGAAAAGAATGTTGAGATTCCTGAAGACCCCGTAAGTAGTTAAATTTAGTCTGAAAATTGGTGAGATTGTATTGATGATTTTTTATGCATTATTTATTAGCTTAACTAATTGTTTTGATTTGAAGTTGATTGATTTATGTTATTTCTTAACTTTGTTATGCAGCAGGTATCAAGTGGAATAGATAAGGGGTTTCAGAGCTTCTGTAGTGATATGTCTATGGTAATGTGAATTTGCTTCTGCCTTCTGCACATTTAGCTGTTTGGCGTTTTTGTACATTCTATATTCACTGTTGTGTTTTTGCTCATTGTATCACCAATTCAGCATAAATATTCAGTTTAAATGAGCTCTATCTTGCTCAAACCAATAAACAGAGTGGAAGTATAGTTTAAGCCGCTAATAGAAAACTGATAACCAAACTGACACCTATTCACAAAAAAGTCGAAAACCGAAATAACTACGAAAGAAGATAGTTCTCACCATTAACAATGACAAGAGCATACCCAAAGGCTGTTTCGGATAGACCCTTGGATCGATTGACAAGTACTTACCATTAAAAGAAGTTATTGTGTCTTGGGATGATTTGTTTTTAGGAAAAGAAAGGAATGGATGAAATGCTATACCTTTTCCATTCTATTTTTTGAGATGTCCATTTTTAAGATAGCGATCATTTTGTTATGTACTTGTTTTTTGCACAACTTTCAAGAATTTTAATTCATTATACTATTCAGACCTATAAAATGATCCATTCTGCTATCCAGTTGAACTTATATTTCATGTTTTGAATCTATTGTCTTTTAGATTAGCATCCTATAACATACATGTCAAATTACTACCCAGTCAATTGGTGTTAAATAAGTGGACACAGTTTTTAAGATGGTGAACTATAAAGACATAAAACAGTTAAACTGAAAAAGAACCCCTTATTGTAATAATGTTTTTTACTTAAGTTGGATTTAGAGGCACAAGTGGTTACTGAATCGTGATAGAGACTGATAATAATTTGGATAATTGGATTACTAATGTAGCTTCAGGGAGGAACTTTGGTCCTGATGTTTCCTGCTCAAACGAAACCCTTTAAAAATTATTTTTTATAACTAATAGTACCATTTTGATATGATACTCTACACGTTTAGCTCTCAGTACAGTGAGTTTAGAGAATTCTGCCACCCTAACAAAGAAGGTCAACCAAAAATTTGGAACATCTTGTTTGTTCCATATGTCGCTCCTCTTCATCGCATTTTTGTTCCATATGTCACTCCTTTTCAGTCTTTCTATTGTATACCGATGATGGTTGTTCTCTGATTATTTTAATAATCACAGAACATGTGAATAAAGCTTATGTAAATTGTAATCCCATTCCCTTGAAACCCGAAGTAAGTCTTTAAGAGACATTAATCTTTTGTCAACAAAAAATCATTTACACAAAGTTAGTTTAATCTTCCTCTTCTACAATGATTTGCAAGGTTAAATCTGCATTTGTTTTCATATTTAATTTGGAAATCTGGAAAATGAATTCCTAATGGTAGAAAAAATGAGCTTGATCACTGATGTGTTCTTTTATCTTCTTGACTGTTTTAGGTGGATGGAATGAAAGAAGGTGAAAATGTGGTTAGTATAGATATGAATGTTGTTGACAATGCAGCTCAACAGAATCCCGTTGATATGTCTAATGGTGTCGTCCTACGAAGGCTTCTTGTGAGTTGAAGTAATATGATTTGAACTGTTGTTTTTTACAAATCCAAACAATCTCTTGAATGTCTTAGCTGGTCTATAACTTTATTATTCATTCTGTGATCTCAGCGGGGGCCCAGATACTTTGATCCTCCAGATAGCAGTTGGGGGACGTGTTATAATTGTGGTGAAGAGGGTCATACGACAGTCAGTTGTACTTCAGCCAAACGCAAAAAACCATGTTTTGTTTGTGGGAGTTTTGATCATAATTCTAAACAGTGTACAAAGGTTCGTGGTTGAAATAGCTACCATTATTATGTGTCCCCTTTGTGATAATTTCATCTTGTTAATCTCCTCACAATTGTTGAATTTGATAAGTGGGAAGTTTGGTCTTCTGTTTCATTTTTTTGATTGACTAACATTGTGAGTCAAGCAGTTGTGACACGCACTTCTCTGCAATAAACAAACGACATCACCACCAAGTCAATGGTATTAAGTATAGAGGGTCTTTATATGTTTGTCGACTTCAAATTTGGATCTTTGGTGAGAATTAGTTATACTTCCTACTAAAACAATGTCTGATGTGAATGAATGTCAACGAAGCCATTCATATAACTGTGTTAATCCTTGGCAATAGAGTTTCACAAAAAGAGGGGTAAGACCAACTATGCTGAACCAGAATGCTAACTGCTAATTTCTAAACTGCCGCTTCTGACCAAACATTACAACTAGATCATAAGTTCTGTCTTTTCCACAGTCCTCAAAGCAACTTTATTTTTCATAGTTCAGCATTGGCCTCTCCCTTATCTGAAACGTTATTCATATCAACTCGCCTAGTCCCCCTGTTTTCTTAGCCGGGTATGTTCATCAGTAGAACCAGTGAAGTATATGATGATTGTGTTCTACTTAGATACTGTTGTAAGTTGTAGAATCATAGAAGTGCATCTGTTGCATGACTGCACATATTTTTTCTGTGTTTAATCTTTTTGGTAGGTTCGGAAGTCATTGGTAGGTTCTTTGCTAACCATAGTATATTGCACAGTAGTATTCTGAATACCCGAGAGGAGTGGCTATATGAAATTAGGTTTATCCTGGAATTTGAAACAAACATATTATCTATGCCTTAAAATTCCAATCCTATTTCAGTTTTGGTCTTAGGAGTATACATCTCAGTCTGCTGATTATGAACAGGGCAAGGAGTGTTTCATTTGCAAGAAGGGCGGTCATCGTGCTAAGGATTGCCCTGAAAAAAGCCAAGGAGGATCTGAGAGTTCAAGAATGTGTTTAAAATGTGGGGATTCTGGGCATGATATGCTGTCATGCTGGAATAACTATTCTGCTGATGATCTAAAGGTATTGCTGAAGAAACTTTTAACTTGAAATTGATTTTTTTTTTCGTGCTTAATCATCACTTTTCCTGTTTTCATCTTGACCTCTACAGGAAATACAATGTTACATTTGTAAGAGTTTTGGTCATCTTTGCTGTGCAAGCTACCCCAATGGTGGTCCAAGTGAAATATCCTGTTACAGATGTGGTCTACTAGGCCATACCGGTTTGGTAAGTAGTTGTACATGAAACGTCACGACTCCTGTGTGTGTGGGGTCTGTGTTTCTCTTGTCTTGTTCAGGAATCCTTTTAATGCTGCAATTTCAACTTGCACATGTTCAATGCAGGCATGCACAGGATCTCGTGGGGAAACTAGTGGTACATGGCATCTTAGTTCTTGTT</genome_strand>
        <mrna_strand>AAAGAAGAAGAAGAAGAAGGAAAAGAATGTTGAGATTCCTGAAGACCCC.......................................................................................................................................GTATCAAGTGGAATAGATAAGGGGTTTCAGAGCTTCTGTAGTGATATGTCTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGAATGAAAGAAGGTGAAAATGTGGTTAGTATAGATATGAATGTTGTTGACAATGCAGCTCAACAGAATCCCGTTGATATGTCTAATGGTGTCGTCCTACGAAGGCTTCTT.........................................................................................................CGGGGGCCCAGATACTTTGATCCTCCAGATAGCAGTTGGGGGACGTGTTATAATTGTGGTGAAGAGGGTCATACGACAGTCAGTTGTACTTCAGCCAAACGCAAAAAACCATGTTTTGTTTGTGGGAGTTTTGATCATAATTCTAAACAGTGTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGAGTGTTTCATTTGCAAGAAGGGCGGTCATCGTGCTAAGGATTGCCCTGAAAAAAGCCAAGGAGGATCTGAGAGTTCAAGAATGTGTTTAAAATGTGGGGATTCTGGGCATGATATGCTGTCATGCTGGAATAACTATTCTGCTGATGATCTAAAG........................................................................................GAAATACAATGTTACATTTGTTAGAGTTTTGGTCATCTTTGCTGTGCAAGCTACCCCCATGGTGGTCCAAGTGAAATATCCTGTTACAGATGTGGTCTACTAGGCCATACCGGTTTG....................................................................................................................GCATGCACAGGATCTCGTGGGGAAACTAGTGGTACATGGCATCTTAGTTCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208121" ref_strand="+" ref_description="SGN-E208121 [cLEC-34-H22]">
      <seq>aaagaagaagaagaagaaggaaaagaatgttgagattcctgaagaccccgtatcaagtggaatagataaggggtttcagagcttctgtagtgatatgtctatggtggatggaatgaaagaaggtgaaaatgtggttagtatagatatgaatgttgttgacaatgcagctcaacagaatcccgttgatatgtctaatggtgtcgtcctacgaaggcttcttcgggggcccagatactttgatcctccagatagcagttgggggacgtgttataattgtggtgaagagggtcatacgacagtcagttgtacttcagccaaacgcaaaaaaccatgttttgtttgtgggagttttgatcataattctaaacagtgtacaaagggcaaggagtgtttcatttgcaagaaggggcggtcatcgtgctaaggattgccctgaaaaaagccaaggaggatctgagagttcaagaatgtggtttaaatgtggggattctgggcatgatatgctgtcatgctggaataactattctgctgatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="22851" stop="19214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22551" g_stop="22503" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22502" i_stop="22368" i_length="135">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22367" g_stop="22314" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="103" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22313" i_stop="20955" i_length="1359">
            <donor d_prob="0.565" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20954" g_stop="20838" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="220" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20837" i_stop="20733" i_length="105">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20732" g_stop="20574" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="379" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20573" i_stop="19671" i_length="903">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19670" g_stop="19514" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="537" r_length="158" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E208121" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22551" e_stop="22503"/>
          <exon e_start="22367" e_stop="22314"/>
          <exon e_start="20954" e_stop="20838"/>
          <exon e_start="20732" e_stop="20574"/>
          <exon e_start="19670" e_stop="19514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAAGAAGAAGAAGGAAAAGAATGTTGAGATTCCTGAAGACCCCGTAAGTAGTTAAATTTAGTCTGAAAATTGGTGAGATTGTATTGATGATTTTTTATGCATTATTTATTAGCTTAACTAATTGTTTTGATTTGAAGTTGATTGATTTATGTTATTTCTTAACTTTGTTATGCAGCAGGTATCAAGTGGAATAGATAAGGGGTTTCAGAGCTTCTGTAGTGATATGTCTATGGTAATGTGAATTTGCTTCTGCCTTCTGCACATTTAGCTGTTTGGCGTTTTTGTACATTCTATATTCACTGTTGTGTTTTTGCTCATTGTATCACCAATTCAGCATAAATATTCAGTTTAAATGAGCTCTATCTTGCTCAAACCAATAAACAGAGTGGAAGTATAGTTTAAGCCGCTAATAGAAAACTGATAACCAAACTGACACCTATTCACAAAAAAGTCGAAAACCGAAATAACTACGAAAGAAGATAGTTCTCACCATTAACAATGACAAGAGCATACCCAAAGGCTGTTTCGGATAGACCCTTGGATCGATTGACAAGTACTTACCATTAAAAGAAGTTATTGTGTCTTGGGATGATTTGTTTTTAGGAAAAGAAAGGAATGGATGAAATGCTATACCTTTTCCATTCTATTTTTTGAGATGTCCATTTTTAAGATAGCGATCATTTTGTTATGTACTTGTTTTTTGCACAACTTTCAAGAATTTTAATTCATTATACTATTCAGACCTATAAAATGATCCATTCTGCTATCCAGTTGAACTTATATTTCATGTTTTGAATCTATTGTCTTTTAGATTAGCATCCTATAACATACATGTCAAATTACTACCCAGTCAATTGGTGTTAAATAAGTGGACACAGTTTTTAAGATGGTGAACTATAAAGACATAAAACAGTTAAACTGAAAAAGAACCCCTTATTGTAATAATGTTTTTTACTTAAGTTGGATTTAGAGGCACAAGTGGTTACTGAATCGTGATAGAGACTGATAATAATTTGGATAATTGGATTACTAATGTAGCTTCAGGGAGGAACTTTGGTCCTGATGTTTCCTGCTCAAACGAAACCCTTTAAAAATTATTTTTTATAACTAATAGTACCATTTTGATATGATACTCTACACGTTTAGCTCTCAGTACAGTGAGTTTAGAGAATTCTGCCACCCTAACAAAGAAGGTCAACCAAAAATTTGGAACATCTTGTTTGTTCCATATGTCGCTCCTCTTCATCGCATTTTTGTTCCATATGTCACTCCTTTTCAGTCTTTCTATTGTATACCGATGATGGTTGTTCTCTGATTATTTTAATAATCACAGAACATGTGAATAAAGCTTATGTAAATTGTAATCCCATTCCCTTGAAACCCGAAGTAAGTCTTTAAGAGACATTAATCTTTTGTCAACAAAAAATCATTTACACAAAGTTAGTTTAATCTTCCTCTTCTACAATGATTTGCAAGGTTAAATCTGCATTTGTTTTCATATTTAATTTGGAAATCTGGAAAATGAATTCCTAATGGTAGAAAAAATGAGCTTGATCACTGATGTGTTCTTTTATCTTCTTGACTGTTTTAGGTGGATGGAATGAAAGAAGGTGAAAATGTGGTTAGTATAGATATGAATGTTGTTGACAATGCAGCTCAACAGAATCCCGTTGATATGTCTAATGGTGTCGTCCTACGAAGGCTTCTTGTGAGTTGAAGTAATATGATTTGAACTGTTGTTTTTTACAAATCCAAACAATCTCTTGAATGTCTTAGCTGGTCTATAACTTTATTATTCATTCTGTGATCTCAGCGGGGGCCCAGATACTTTGATCCTCCAGATAGCAGTTGGGGGACGTGTTATAATTGTGGTGAAGAGGGTCATACGACAGTCAGTTGTACTTCAGCCAAACGCAAAAAACCATGTTTTGTTTGTGGGAGTTTTGATCATAATTCTAAACAGTGTACAAAGGTTCGTGGTTGAAATAGCTACCATTATTATGTGTCCCCTTTGTGATAATTTCATCTTGTTAATCTCCTCACAATTGTTGAATTTGATAAGTGGGAAGTTTGGTCTTCTGTTTCATTTTTTTGATTGACTAACATTGTGAGTCAAGCAGTTGTGACACGCACTTCTCTGCAATAAACAAACGACATCACCACCAAGTCAATGGTATTAAGTATAGAGGGTCTTTATATGTTTGTCGACTTCAAATTTGGATCTTTGGTGAGAATTAGTTATACTTCCTACTAAAACAATGTCTGATGTGAATGAATGTCAACGAAGCCATTCATATAACTGTGTTAATCCTTGGCAATAGAGTTTCACAAAAAGAGGGGTAAGACCAACTATGCTGAACCAGAATGCTAACTGCTAATTTCTAAACTGCCGCTTCTGACCAAACATTACAACTAGATCATAAGTTCTGTCTTTTCCACAGTCCTCAAAGCAACTTTATTTTTCATAGTTCAGCATTGGCCTCTCCCTTATCTGAAACGTTATTCATATCAACTCGCCTAGTCCCCCTGTTTTCTTAGCCGGGTATGTTCATCAGTAGAACCAGTGAAGTATATGATGATTGTGTTCTACTTAGATACTGTTGTAAGTTGTAGAATCATAGAAGTGCATCTGTTGCATGACTGCACATATTTTTTCTGTGTTTAATCTTTTTGGTAGGTTCGGAAGTCATTGGTAGGTTCTTTGCTAACCATAGTATATTGCACAGTAGTATTCTGAATACCCGAGAGGAGTGGCTATATGAAATTAGGTTTATCCTGGAATTTGAAACAAACATATTATCTATGCCTTAAAATTCCAATCCTATTTCAGTTTTGGTCTTAGGAGTATACATCTCAGTCTGCTGATTATGAACAGGGCAAGGAGTGTTTCATTTGCAAGAA-GGGCGGTCATCGTGCTAAGGATTGCCCTGAAAAAAGCCAAGGAGGATCTGAGAGTTCAAGAATGTGTTTAAAATGTGGGGATTCTGGGCATGATATGCTGTCATGCTGGAATAACTATTCTGCTGATGATC</genome_strand>
        <mrna_strand>AAAGAAGAAGAAGAAGAAGGAAAAGAATGTTGAGATTCCTGAAGACCCC.......................................................................................................................................GTATCAAGTGGAATAGATAAGGGGTTTCAGAGCTTCTGTAGTGATATGTCTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGAATGAAAGAAGGTGAAAATGTGGTTAGTATAGATATGAATGTTGTTGACAATGCAGCTCAACAGAATCCCGTTGATATGTCTAATGGTGTCGTCCTACGAAGGCTTCTT.........................................................................................................CGGGGGCCCAGATACTTTGATCCTCCAGATAGCAGTTGGGGGACGTGTTATAATTGTGGTGAAGAGGGTCATACGACAGTCAGTTGTACTTCAGCCAAACGCAAAAAACCATGTTTTGTTTGTGGGAGTTTTGATCATAATTCTAAACAGTGTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGAGTGTTTCATTTGCAAGAAGGGGCGGTCATCGTGCTAAGGATTGCCCTGAAAAAAGCCAAGGAGGATCTGAGAGTTCAAGAATGTGGTTTAAATGTGGGGATTCTGGGCATGATATGCTGTCATGCTGGAATAACTATTCTGCTGATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225295" ref_strand="+" ref_description="SGN-E225295 [cLEL-17-M1](-)">
      <seq>tcgattagaatttccctgtaaaacaatgggtaagcgagagaagaaggagaagaaatcagcaaaatcagaagttatggaggtagaggaattatcagaggtaaaaatgaagaaatctaagagagtgcggagtaagaaaagaaaagaagaagatgaagatgatgatgttgaagctaatgaagatctcagcttgaaaattgttgagaaagctttgcttcgtgggtgctcaactgaaaatggcgaagttgtggttgttacagatttgaagaagaaagagaaacacaaagagaaagagaaagagccccagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="23157" stop="22260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22857" g_stop="22537" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E225295" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22857" e_stop="22537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTAGAATTTCACTGTAAAACAATGGGTAAGCGAGAGAAGAAGGAGAAGAAATCAGCAAAATCAGAAGTTATGGAGGTAGAGGAATTATCAGAGGTAAAAATGAAGAAATCTAAGAGAGTGCGGAGTAAGAAAAGAAAAGAAGAAGATGAAGATGATGATGTTGAAGCTAATGAAGATCTCAGCTTGAAAATTGTTGAGAAAGCTTTGCTTCGTGGGTGCTCAACTGAAAATGGCGAAGTTGTGGTTGTTACAGATTTGAAGAAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAAAGAAGAAGAAGAA</genome_strand>
        <mrna_strand>TCGATTAGAATTTCCCTGTAAAACAATGGGTAAGCGAGAGAAGAAGGAGAAGAAATCAGCAAAATCAGAAGTTATGGAGGTAGAGGAATTATCAGAGGTAAAAATGAAGAAATCTAAGAGAGTGCGGAGTAAGAAAAGAAAAGAAGAAGATGAAGATGATGATGTTGAAGCTAATGAAGATCTCAGCTTGAAAATTGTTGAGAAAGCTTTGCTTCGTGGGTGCTCAACTGAAAATGGCGAAGTTGTGGTTGTTACAGATTTGAAGAAGAAAGAGAAACACAAAGAGAAAGAGAAAGAGCCCCAGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225463" ref_strand="+" ref_description="SGN-E225463 [cLEL-17-M1](-)">
      <seq>tcgattagaatttcactgtaaaacaatgggtaagcgagagaagaaggagaagaaatcagcaaaatcagaagttatggaggtagaggaattatcagaggtaaaaatgaagaaatctaagagagtgcggagtaagaaaagaaaagaagaagatgaagatgatgatgttgaagctaatgaagatctcagcttgaaaattgttgagaaagctatgcttcgtgggtgctcaactgaaaatggcgaagttgtggttgttacagatttgaagaagaaagacaaagagaaagagaaagagaaagagatagaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="23157" stop="22234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22857" g_stop="22537" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E225463" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22857" e_stop="22537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTAGAATTTCACTGTAAAACAATGGGTAAGCGAGAGAAGAAGGAGAAGAAATCAGCAAAATCAGAAGTTATGGAGGTAGAGGAATTATCAGAGGTAAAAATGAAGAAATCTAAGAGAGTGCGGAGTAAGAAAAGAAAAGAAGAAGATGAAGATGATGATGTTGAAGCTAATGAAGATCTCAGCTTGAAAATTGTTGAGAAAGCTTTGCTTCGTGGGTGCTCAACTGAAAATGGCGAAGTTGTGGTTGTTACAGATTTGAAGAAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAAAGAAGAAGAAGAA</genome_strand>
        <mrna_strand>TCGATTAGAATTTCACTGTAAAACAATGGGTAAGCGAGAGAAGAAGGAGAAGAAATCAGCAAAATCAGAAGTTATGGAGGTAGAGGAATTATCAGAGGTAAAAATGAAGAAATCTAAGAGAGTGCGGAGTAAGAAAAGAAAAGAAGAAGATGAAGATGATGATGTTGAAGCTAATGAAGATCTCAGCTTGAAAATTGTTGAGAAAGCTATGCTTCGTGGGTGCTCAACTGAAAATGGCGAAGTTGTGGTTGTTACAGATTTGAAGAAGAAAGACAAAGAGAAAGAGAAAGAGAAAGAGATAGAAAAAAAAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339495" ref_strand="+" ref_description="SGN-E339495 [cTOE-16-C17]">
      <seq>ttttcttctcaaatttacagcaaaattagctcaaaattctcttcaatttcttcatcgaatgaccataatgactcctgctcctaccgatgaagaggaggagatgcttgttccgcgttcagatttggtatttgaaggacctcagcctatggaagcacaagcagaaaccggcaatgatgtggaaaagcagccaccagaggatcctcaaacttcaaggtttacttggaagatagataacttctctaggttgaatgtaaagaaactatactctgacccttttgttgtcggtggctataaatggcggattttaatttttcccaaggggaacaatgttgattacctatccatgtatctggatgttgctgattcagctaatttaccttacgggtggagtagatatgcccagttcaacttgtcaattgttaaccaaattcataacaagtactccatcagaaaagagacacaacaccaattcaatgccagagaaagtgattggggtttcacatcctttatgccacttggtgaactatatgatccaaacaaaggttatcttgttgatgatacatgtgttgttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="24898" stop="29584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25198" g_stop="25285" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25286" i_stop="25621" i_length="336">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25622" g_stop="25685" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="152" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25686" i_stop="26964" i_length="1279">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26965" g_stop="27109" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="297" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27200" i_length="91">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27201" g_stop="27358" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="455" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27359" i_stop="29163" i_length="1805">
            <donor d_prob="0.178" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29164" g_stop="29284" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="576" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E339495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25198" e_stop="25285"/>
          <exon e_start="25622" e_stop="25685"/>
          <exon e_start="26965" e_stop="27109"/>
          <exon e_start="27201" e_stop="27358"/>
          <exon e_start="29164" e_stop="29284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTCAAATTTACAGCAAAATTAGCTCAAAATTCTCTTCAATTTCTTCATCGAATGACCATAATGACTCCTGCTCCTACCGATGTAAGTCTCACTATTTCTTGACCTCTGTATGATTTTATAGTCAGTACACACAGACATGTTCGTTTGGTTGTTTCAATTTTTTTTTTTGAGTTTTAATTTGTTTTGTGTGTTTAAAATCAGTTTAGGGTTTGTTTCTGCTTGTGGGTTTTTGTTGATTTCAGTTTTTAGTTTATGTTTATTGTTTTTATACTGTATACAGACACATAGACAGGTTCAATTGGCGGATTTTCAGTTTTTATTGGAGTTTTAGTTTTGTGTTTCAGAATCGATTAGGGTGGTGTTTTTGCTTCTGGGTTTTTGTTGATTTCGTTTTTTTTACTTATGTTGGGGTAGCAGGAAGAGGAGGAGATGCTTGTTCCGCGTTCAGATTTGGTATTTGAAGGACCTCAGCCTATGGAAGGTAAAGTTTGAAGCTTTAATTTCTGGTTTGTTTTAGTTTTTTTCAACTATGACATTTCTAGGTTTTGGTGACACTGTACTGGGATTTAATGGTTATATTAGGTTAAAACTGTTGGCAAATAGAGAAATGCAGGGGAAAAGGAAGAAAGAAGGAAGCAATTTGTTTGGAATGATTCTAAGCGATTGAGGGAATATTTTCTTTAATAATTGCGGTGTCTGGGCTTGTTGTTCACCTCAACTAATTTCATGGACTTAGTCCAATAAAGGCTAAGACAGATGGAAAGAGATCACCTAGTGTTTTCATCAGCTATTTGGGATTTGAATCTGAGGCCTCATAGTGCTTGATTCACTCCATGGATCACTAGGCCACACTCTTTGATTAGCTGAGGGGATAGTTTTAGTAGGAAATTCTGATTCCACCTAGTTTTTTTTTTATGGATATTGAAGAACTCTAGGTGAATCCCACATCTACGAAGAGATGTTGGGTATAAGAAAACAAGTCTTAAGACCCTACATGCCTGTTTCAAACCCGTGCAGGCTTAGGTCCTAAGCGGACAATATCACTATTGGGCTGGGCTGTGACGTGTATGAAACACCATAGGTGAATCCCACATCAACAAAACATGGGAGAGATGCTGGGTATATAAGGAAGCAAGCCTTGGACCCTAATGACATATTTTAGACCGTGCGGGCGAAGGGTCAAAGGGTACAATATCACTAGTGGGCTGGGATGTGATTGCTGTACATGGTTGGTAATGGTGAAATCTTGTCCTAACAGAATTTAAGGGTTATGGAGATGGCAGATTTCCTAGTATCTGTTTTGTTTGCGGGTTGTTGTATCAATATGTGCCGGAATATATGATTTCAGTTCTTATTTTGTATGATCATTGTGTTTTCACTATTTTTCTGATGGCGTGTTTGATGAATGACGCGTGGGAAAATTGAAGATTCTTTACCCTTTCCAGTATTTGTTTAAAGTACCAGATCCACTTTGTAGTTTCCGGGGTAACTTAACTTTTCTGTTACATCTCTAGTGTCCTTGGTTATCTATCTACCGAAGTGGTGTGGAAAATGCTCATGTAGCATATGGGCATTTGTTCCATGAATCTGTATTTGCAGATATAGGGACCGGGAAAGGATTACAGACTGCAGCTTAACCATAACCTGCTAAATTTTATGATATTGAGCCATCAGTTGATTGTTCACTATATATTATGCTGATCTCTTGAGAATGGACTTTCAAGTTTTTTTCTAATAGTTCCTCCTTAATTGCTTGTTAGCACAAGCAGAAACCGGCAATGATGTGGAAAAGCAGCCACCAGAGGATCCTCAAACTTCAAGGTTTACTTGGAAGATAGATAACTTCTCTAGGTTGAATGTAAAGAAACTATACTCTGACCCTTTTGTTGTCGGTGGCTATAAATGGTAATGTTAATCTCTCCATGCTACTTGCAAGTTTAAAGCTCTACTTCCATAATCCCATAATGACCTCTTTTCTGCTGTTTTGTTGTGCCAGGCGGATTTTAATTTTTCCCAAGGGGAACAATGTTGATTACCTATCCATGTATCTGGATGTTGCTGATTCAGCTAATTTACCTTACGGGTGGAGTAGATATGCCCAGTTCAACTTGTCAATTGTTAACCAAATTCATAACAAGTACTCCATCAGAAAAGGTACTTCAGTAAGAATCCAAAATTCTGATGATCTCGCTGATAATAGAAAACCAGTTTCAGTTGTTTACAATATGGTGTGCTTGTGCCAATGTTCTTGTATTCTTTACTATGACCTTGGCTGTTGGTTACCTTGTATACCATAAAAGAGGTGATATTTTATGCTCTTCAAAACAGTGTCCACCAGAATAATTTGGTTTTCGGTCTTTTGGCTATACTTTGTTGAGGCGGCAAACATCATATTGTCTTTCTACTATCGATTCATTTTAATGACAAGTCTGAATACGTTTAGCCATGTATTTGGTGCAACCTGATCAGCTCAGTGCATCCCCCCTCCCTCCTAAAAACGGAATTACAATAGAAAACCTTGTTTCCATAGTCGTGGTCAGTAGCTGCTAGACCTGTTTGTTGAGGATCTCTTGACTAACATTTGTTAATAGGAAGTTATAAGTTTTTCTAAGTTATTCCTTAAAAATTTAAATATCAAGTTTTTTTATTCTAATGTACTCTTGCCTGACAATTTCTGTTTTCATTTTCTGCTGCTTTGTGGATTGCTGCAATTTTTGCCTGCTGTTTTTAATTCTATTGTGTAGAGCAGTGTACCCGATTTGGTCCTCCTCCTTCAGAGGTTAAAATAAGCTTTCTGTTGATAGGAAGAGAAGAATAGTGTAACCAATTCTTGAACAGAAATAATGTCTGTTGGTTCTTCGTAAAGAACCTAAGAAATGAGAAGTCAAGAGAACGCAATGAAGCAAAACTACCAAATGCATACCCAAGCTAGTTTTGTTACTCTCTTAGCATTTTGCCTCTGTATTCGAAAGCATGTTAGTGCAACCATAAGTTCTTCCTTTGCATTTATGTGCAAGTTAATACCAAAAAAAAAACCGGGCCCTTGATTCAGTGGGACATATTTGGTCGAATTTCTTGAAGTTATGCTGTTTTGAGATAGTACAACAACTACACCTCAGTTCCCAACAAGTAAGGGTTGGCTATATGAGTCCTCACATGTTTTTCCATTAACGCGAACTCATTCATCATCGTACTAAATACAAATAAAAGTGAAAAGTAATAAATATAAATTAAGAAAATAATTATAGCTGTAACATTTCAAAATATTGTTATAGGCATATAAATCTATGATGGGCCAAAATACTCCCAGAAAAATTAAAGTTTTAAAATCAATGTACTATCAAGACTAATACCTCATTACTGGGGATTGTATACTTTGTTAGGTCTTGATTCCTTTTTCTACTGATTGAAGCTATATTACGTGCTGAACAAATCTCTTCTTTGTTTGGAGTCGATTGATTCCTCAATCAAGTCCTAACTTGAAGTATATACCAAGAAGAAGAAAAATTGTTTGGGTTCGAGGCAAGGTCATTCTCCCCTGTTGTGAAGTTCTGCTCTAGTATCAGAGATAGGATCAACTGTAGTATTGACTCATGCAAATCTGCTTCTCTCAAGTTAAGTTCTATCACTCTTAGTGAGAAAAAATAAGTTGGGAAGGCACGTTGCCTTTATCTTTCCAAGTGTTCCGTAATAATAGTATAGTGGAAAAATTCCACACTTGCACAATAGATGCATGATCTCTAGTTATTTTGAGTTTGAGCTCTTACGTAGTATATGATTGTTTATAATGTAAATGTAGTCAGAGTTAAATATTTAAATTATTCTTTTTTGGCTAGTTCCAGTTTGTGATTTTATTATTGTCAGGCTGTTTCAGATAAGCCCACAACTATTTGAAACTGTCATAGTTGCATTTATGGTCTAGTAGATTTATATAAATGTTATTCTCTCATGCTTTATAGAGACACAACACCAATTCAATGCCAGAGAAAGTGATTGGGGTTTCACATCCTTTATGCCACTTGGTGAACTATATGATCCAAACAAAGGTTATCTTGTTGATGATACATGTGTTGTTGATGC</genome_strand>
        <mrna_strand>TTTTCTTCTCAAATTTACAGCAAAATTAGCTCAAAATTCTCTTCAATTTCTTCATCGAATGACCATAATGACTCCTGCTCCTACCGAT................................................................................................................................................................................................................................................................................................................................................GAAGAGGAGGAGATGCTTGTTCCGCGTTCAGATTTGGTATTTGAAGGACCTCAGCCTATGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAGCAGAAACCGGCAATGATGTGGAAAAGCAGCCACCAGAGGATCCTCAAACTTCAAGGTTTACTTGGAAGATAGATAACTTCTCTAGGTTGAATGTAAAGAAACTATACTCTGACCCTTTTGTTGTCGGTGGCTATAAATG...........................................................................................GCGGATTTTAATTTTTCCCAAGGGGAACAATGTTGATTACCTATCCATGTATCTGGATGTTGCTGATTCAGCTAATTTACCTTACGGGTGGAGTAGATATGCCCAGTTCAACTTGTCAATTGTTAACCAAATTCATAACAAGTACTCCATCAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACAACACCAATTCAATGCCAGAGAAAGTGATTGGGGTTTCACATCCTTTATGCCACTTGGTGAACTATATGATCCAAACAAAGGTTATCTTGTTGATGATACATGTGTTGTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334091" ref_strand="+" ref_description="SGN-E334091 [cTOD-21-A9]">
      <seq>ggatgggacacatatgattctttcttgcagcatgatgtgcaagaactcaatcgtgttctctgtgaaaagcttgaagaaaaaatgaagggtactgttgtggaaggcactatacagcagttattcgaagggcaccatatgaactatattgagtgcatcaatgtggactacaaatctacgagaaaggagtcattttatgatcttcagcttgatgtcaaagggtgtgctgatgtttatgcttcgtttgataaatatgttgaagttgaacgtcttgagggcgataacaagtaccatgccgaacaatatggtttgcaggatgctaagaagggtgtcttattcatggatttcccccctgtcctgcagcttcagttaaagcgctttgaatatgatttttcacgggacactatggtaaagataaatgacaggtatgagttccctctgcaactcgatctagatagagagaatggtaaatacttgtcgcctgaggcagatggaagtgtcagaaacctttacacacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="29345" stop="34016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29645" g_stop="29731" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29732" i_stop="29806" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29807" g_stop="29915" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="196" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29916" i_stop="30006" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30007" g_stop="30122" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="312" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30123" i_stop="30336" i_length="214">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30337" g_stop="30435" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="411" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30436" i_stop="33610" i_length="3175">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33611" g_stop="33716" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="517" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E334091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29645" e_stop="29731"/>
          <exon e_start="29807" e_stop="29915"/>
          <exon e_start="30007" e_stop="30122"/>
          <exon e_start="30337" e_stop="30435"/>
          <exon e_start="33611" e_stop="33716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGGGACACATATGATTCTTTCTTGCAGCATGATGTGCAAGAACTCAATCGTGTTCTCTGTGAAAAGCTTGAAGAAAAAATGAAGGTAAATCAAACTTCAGTTGGTTGTTGGTGCTTCAGTAATTTCTAATTGACATGATCACTCTTTTTCTGCTGTTAGGGTACTGTTGTGGAAGGCACTATACAGCAGTTATTCGAAGGGCACCATATGAACTATATTGAGTGCATCAATGTGGACTACAAATCTACGAGAAAGGAGTCATTTTATGGTTTAGTAGATCAGACAAGCTCCTGATGTTGTCTTCTATAGCCATTTAAGTTTTGCACCTTATGGTGTTCTGTATATATTGTGTGTGGCAGATCTTCAGCTTGATGTCAAAGGGTGTGCTGATGTTTATGCTTCGTTTGATAAATATGTTGAAGTTGAACGTCTTGAGGGCGATAACAAGTACCATGCCGAACAATATGGTTTGCAGGTAACATAGCACACTAGTCTTGCAGTTCCAAGTGCTCCTTGAGTTACTCCGGGCAAAGTTCACATAAGTTTCTATAAAATTTAGCTGCAAGGCTGCAACTACATTTAACGTTTTCTCGTATTTCTTTTTATCTTCTCCTGTTGGTTGATCTATTGAAGGTTTAGGCTATTTTTCCTAGGTTCACTTATCTAATGTTAATATTTGGTTGTTTCAGGATGCTAAGAAGGGTGTCTTATTCATGGATTTCCCCCCTGTCCTGCAGCTTCAGTTAAAGCGCTTTGAATATGATTTTTCACGGGACACTATGGTAAAGGTCAGTTTCAACAAGGCCCAGCAAATTTCCAGTATTTTAATGGTCCACAATATCTAATTTTCATGCTGAAGACTATTCTTCAGCTCTAATGCCCTGCAATTGGAAGCATGGAGTGTACACAGTTTTAGAATTCAAACATAAGGTTACAACAACAGAAGAAGACTGTCAAATCACAAAATCAGCCCAAAATAATGGGAAAACATATTAGGACTTCATCAGAGCTTGAAATTCAGTTGGAAGATCACAAAATTAAAACAAAATTTGATTGGTCAGTCTGATGGATTTATCTTCTAATGAAGCAATTTAGGATTTTCTCATCTAAAAAGCAAGCCGGTAGCAAGATATCTTTAGTTATATCGCAAAACAGTTTTTAGTAAAAGTTCTGTAGATAATGGTTTAGATTTCTGTAAGAATAGTGAAATAGATTAGTTTTAATCGTTCATTTCCATTTATATGATGACTCTCGCATGAAAATGATGGATCCATTCAGATCTTTCTTATTCATTTTCAAGAAGTTTTGACATATAAAGCTAGTTCTCGTTCTCGACATCAGTAGGTTAACTACGTTTGCTTTGTTTAATCACAGAACCATAGCATGTTTTATGAAATCTAGAGAAAAGATGTACTCATTGATTGCCAGTACTTTCATCTTGATGTTAGTTTTACTTAATGATGCTTGAAGAGTATACCTCTGGGGCGCTTATGTATCATCAAAGGTAGTATTCTTCTGTTTATCCTCAAGAGATTAAGTAGCTTATCGTCATCAAAAAGGATAAATCAGCTTATATTTTGTGCTGTGAAGTGTTAGTAATGCCTTTATTTAGTACAAGTTTTGCAGTATTCAGTTGTTACCCTCAATGGTTTTCACAATTAGGGTAAATGGTTGCGAAGGTTAGAAAGATAGAAGCTATTGAGTTGGGGGTTCTTAAAGAGATGTAGAAAGAGTTACGGTATCAGTTCAGGTACATAACCTGCTCTTTGCAGCCTCTGTATGGTAAAGGAAACCAAAAGAAGGATAGAAGGATAATCCTGCTGCTTATGTGCAGGCTCAAGTTGGAAAAAAAATAAATAGGAAGGAATATTGGGCTGCAGCATTGATTGTGGGAAGTGAGTTGAGAAGAAATCTTTTTACTACCAAAGGGAAAATAACCAGTGAACATTAAGCTTGCATTTGGACATGCGATGTGAAGTCATGATTCAAATCAACGTTTGTATATGCTATTTTGATCATGATTTCATATCCCCTATTCTCCAAAAAACATGATTTGGGGATTTTAAATCATGATTTCATTTTTTTAAAATGTAGCACTTGGCCCATAAGTGTATATTTTGTAAAAGAAAACATGTCATTTTATATTTTACATAAATGGACTCGTGCTCGGGGTGAAGAGATTGTCGTACCATGTGAAATGATTATATTAAAGAATTACTAGTTACTACCTTTGTTGACTAGTGGGAACTTTATAAAATTATAACTATTTGAAAGTTTGTTATCACAAACATCTATTTATAAAAAGGAACATGGAGATATGGGGTAATTGATAGTTTTCTCAACTTTGTGGGGTTTTCATGTTTATGTGAAAAAATGTCTTTAAGAATTCAAATTGCATGTCCCAACAAAACTTCAACTTAAAATCAATATGATTTCAGATCACGATTCCATATCACATGTACAAAACTTCAACTTAAAATCAGTCTGATTTCAGATCATGATTCCATATCACATGTCCAGACGGGGCCCTATGTTAAGCGGAAAAAGAAAAGCAAATTATTGTGGCACTGCTGTTTATGTATATCAAATATGCTGTAGAAATTCATATAACACAAACCTGATTACATTAGGGTTTCCTTGTTCATTTTTTTTCAAAGTTCATTCGCCTATAAAACTAGGTCTAAACCTTCCTATTTGTTGAACCTATTAATAATAATTTGAACTCTGATCATTATCACTTAATCAACTAGTGTCAATCCCAGGGTAGTTGAGTCACCTGTGCATAATTAATGGTGGATTTTTTTAAAATTGTGGGTTTGACAGCTAGTTGCTCGTAGTTTCCAGACAATTAATAGAAATTTGATGGCGTTTTTTCCAAACTTAACTATGACTAGTGTTTTGGAAGTCGAAAGGCCATAAAAGGCGACAAGGGTCTGCTTTGCCATGAGGCGAGGCGAACGGCGAGGCGCTCGCTTTTTTGAAGTGTGACACCATTTAATACCAAAAAATTAAAATATTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAATTCAAAAAGTAAAAATAGATAGTACATACCAAAAGTCTAGAACTTGAATGAGAAAGAAAAGAGCAAAAGTCAAAACAAAGGTAGAAGTGACTCAAGTCTAAAGAAGAAAAGAAGAAATATGTATTATGTTAACTTTCTCAAAAAAAGAAGAAATATGTGTTGGTTAGACTTTGGAGTAACCAGAAACGCTTGGCTAGTTGCCGGAGGAGTCTAGTCAAAAATCTTAAAATTACCTTTTAACTTTTAAAACCCTAGATTGATCACCTTTTTTTTAAAGAAAATACAAAACCGACACCTTTCTAGCCTTTCTCGCCCCTTGCCTCTAGCCTTTCGTCGTCATAGCGTCGCCTTTTGAAGATCGCCTCGCCCCAAAGCTAAAAGGCGATGAAGGGTCTCCTCGCCTTGCCTCTTGCCATTGGCGATGAGGCGATCGCCTTTCACAAAAACCGACTATGACCCTGTCATTTAAAGCTTAATGTAGGTGCATGAATTATATGTAGCTCTTTAGAATATTTATTTCTTTTTCTGGTATACCTTTAGATTATTTTGTTCCAATAAGCATTTCAATGATATTTTGATTGTTTTCAGCAAATGTTTTTCTATGTTCATTGCATCTCTTGATCAATATGGTGGTGCTCTTGTTAAAGTAGCGTGTAACCATTGGTGATGCATGTAAAGGGAATTTTCTAAATACAATCATTTTTTCTTCAAAGTTAACCATTTGTAGCTTTAACTGTTCAATGGCCTTGCACATAAGGTGTATCCTTCTTGGCCCTCTGTTTAGACAAAGTACCATCAATAGGATGAGAGTTACAGAAAAAAGTAGCAGAAGTACTTCTCAGATTGCTGATATTCATCAATTGATATGAGTTTATTGTTTGGTGATGCAATGTAGATAAATGACAGGTATGAGTTCCCTCTGCAACTCGATCTAGATAGAGAGAATGGTAAATACTTGTCGCCTGAGGCAGATGGAAGTGTCAGAAACCTTTACACACTTC</genome_strand>
        <mrna_strand>GGATGGGACACATATGATTCTTTCTTGCAGCATGATGTGCAAGAACTCAATCGTGTTCTCTGTGAAAAGCTTGAAGAAAAAATGAAG...........................................................................GGTACTGTTGTGGAAGGCACTATACAGCAGTTATTCGAAGGGCACCATATGAACTATATTGAGTGCATCAATGTGGACTACAAATCTACGAGAAAGGAGTCATTTTATG...........................................................................................ATCTTCAGCTTGATGTCAAAGGGTGTGCTGATGTTTATGCTTCGTTTGATAAATATGTTGAAGTTGAACGTCTTGAGGGCGATAACAAGTACCATGCCGAACAATATGGTTTGCAG......................................................................................................................................................................................................................GATGCTAAGAAGGGTGTCTTATTCATGGATTTCCCCCCTGTCCTGCAGCTTCAGTTAAAGCGCTTTGAATATGATTTTTCACGGGACACTATGGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATGACAGGTATGAGTTCCCTCTGCAACTCGATCTAGATAGAGAGAATGGTAAATACTTGTCGCCTGAGGCAGATGGAAGTGTCAGAAACCTTTACACACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355863" ref_strand="+" ref_description="SGN-E355863 [cLHT-12-K7]">
      <seq>actctttcagatcaatggtataaatttgatgatgaacgtgtgactaaagaagatgtgaaaagagctctagaagagcagtatggaggagaagaagagttgccacaaacaaatcctggatttaataatactcccttcaaatttactaagtattcaaatgcttacatgctggtctatattcgggaatgtgacaaagagaaaataatgtgtaatgttgacgagaaggacattgctgagcacctcagggcaaggttaaagagagaacaagaagagaaagagcagaagaagaaggagaaagcagaggcacacctttacacaattataaaggtttctcgtgatgaagacctcagacatctgatattttgtactatgaagtactggacattcctttgccagaattgcaaggtttaaaaaccttaaaagtagcttttcatcatgctaccaaagatgaagtggtcacttacactatcagactaccaaaacaatctactgttggtgatgtaattaatgatctaaagacaaaggttgagttgtcaaatccagatggcgaattaagattgctagaggtcttctaccacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="34476" stop="43037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34776" g_stop="34792" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34793" i_stop="37204" i_length="2412">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37205" g_stop="37283" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="96" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37284" i_stop="37383" i_length="100">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.196" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37384" g_stop="37530" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="243" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37531" i_stop="37623" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37624" g_stop="37704" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="324" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37705" i_stop="37802" i_length="98">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37803" g_stop="37825" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="347" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37826" i_stop="42271" i_length="4446">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42272" g_stop="42373" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="449" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42374" i_stop="42475" i_length="102">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42476" g_stop="42547" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="521" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42548" i_stop="42679" i_length="132">
            <donor d_prob="0.914" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="42680" g_stop="42737" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="579" r_length="58" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E355863" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34776" e_stop="34792"/>
          <exon e_start="37205" e_stop="37283"/>
          <exon e_start="37384" e_stop="37530"/>
          <exon e_start="37624" e_stop="37704"/>
          <exon e_start="37803" e_stop="37825"/>
          <exon e_start="42272" e_stop="42373"/>
          <exon e_start="42476" e_stop="42547"/>
          <exon e_start="42680" e_stop="42737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTTCAGATCAATGGTAAACATTTCTGAGTTTGTATCTGTGCTCCTGAACTTTTTGTATGACAGAATCATGCATTCAACAGATGTATCCTTTTCTATTTTTCTGATAAGGACAGTTGTGCTATTTTTTCATAAAACTATCTTCTTACTAATGTTAAGTTGCTTTGCCCTTTTGGTGGCAGATATAAGTGATAGTAGACTAGTAGTTGACAATCCGCTAACAATGTTTTGAGATTCTGCTTTTTAATAGCCACCCATAAATCTTCACATTATTCTAAGGTAATAATTTAATGAACAACAACAACAATATACCCAGTGTAATCTCCCAAGTGGGTCTTGGGGAGAGTAGAATGTACGTATACCTTACCCACTACCTTGGGGAGTTGGAGAATTGTTTCCTAAAGACTCTCGGCACAAGTAACACATATCAAAGCAGTTCTTTAAAAAAAGAAACAAAATACAGAAATAAAATACACAGCAAAAAGTAGAGAAATCATTACATAACATTCGAAAAAAGGACATTAACAACAACAAAATAATGTAATAACTGAAACAAAGAAACAATAGGCAATAACAAAAATCTAAAGGCAAGAAATTACGAGAGATAGAACTACTGCTACCACAAGGAGAAACATGTATGGTGCACCAAGACTATCCTGTAGTGAAGCCAGACAACACTCAACTACCTACTAACCTTCTACCCTAATCTTCGACCTCCCTATCCTCCTATCTAAAATGTCTCCTTGGTAAGCTGAAGATGCACTTTGTCCTTTGTCTAATCAACTCTCTCCAATAGTTCTTCAGCCTACCTCGACCTTCCCTTAACACCTTGTTTGGATGGTTGCTATTCATTGTATTGTATTGTACTCTATTGTATTGTTAGCTTGAATACAATATTTGTTTTGATCGTTACTTATGTTCTATTATATCGTATCGTTTAAATCTATCGTTAGGTCGGGACAAAAAGACCCATTTTATGGAATGATTGATTTGGTGTAATCGCGTCGTTACGTTAATATTTTCTAGATGAGCTACACAAACAGTTAATTGTCTACAAGAAGGCATCCAATCTTTAATAGAAGCAGAAACTTCATAGTACTAACAATAAGAGGTTATCCCTCAAATGTACACAGCTAGGATGTATCCCTTCAAACATTCACCTAGTTCTTTCTTACCAAATGACCCACATGAGAGCCGAAGTATTCATGCCTTGTGTGTTCTCCTCCTCATGAAAGCCATTTACTCTTCTTTTGTTTCCTTACCTGATAATACCTTTGGCCTTTGAATTTACATCCAGTTGTATATAGCAACTTATGAGTTCTTGCTCTTACTGTGCTATAAACCCGGGGATGCAACTTAATGCTTCTTTGGAGGCATCCTAAGCTGTTCTCTGGAGGAGAAATATTTAAAAAGTGCAGGAAATCCCCAGGACTGATGGATATATACGCCTCTATTTGTTGTAATGATAGAGAGACAGAAATACTAGACAGTCTTCAAACAAGAAGTCACATTTAATTAAGGAAGTTACTTTATTGAGTTTAACTTGGGACCTTTTACAGTTTATCATCCTTTCGTCTGTATATAGAACTGTTTTTATTGTATATGATTTTAAGTTACTCATATAAATTGGTTGCCGACCTATTACATCAGCACCTGCTATCACTAACTTGTAGGCAGGATTTCGTTAGAACTTGGAGGTAAATTTACGAAGGAGCCTGTATTTACTCGTAGTGATTGGTTTCGTAAAAGAACACGAAAGTGGCAAGGTTGGCACCTGTTTGAGGGCAAACTGCAATTAAAACACACTTAAGTGGAAAAAAAGCACAGATGAAAAAAGAGCTATATGGACCACGAAATTTAAAATAATTGCTACCAAGCGAAATGTGTGAAACAAAAAAATGGTGTTAGTTAAATCAAAAACTGCTTTAAATTTATGATTCTAGAGAAAAGACTCAAATTTTGGTTCTAATTCAGACGAGTGACTAGTTTTTAATTTTAATTTTAATTTTCTGATCTCCAGTGATTACTTGTTGGAGATCCCTTTGACCTTACAGGAGTTTTTCTGTTGGATTAATTTCTTTGTAATGCTTGTAATTATAAGTTATTTAAAGCTGTGGTGCATGAGATGCTCCTTGTGAGGTAATCTTTGTGAACGAAGCTAATAAAGTTGTTTATAGTTATGGTGCATGAAGTACTCCTTGGGGGGTAATATCTGTGTTTGGCATGGCATAATCTACTAATGGTCTCTTGACTTTTTAGTCCAGAATTTTTTAGGATGAGTATTTTATGATTCAATATTTGGCTAATAGTGTACTTTTAGGTACCTGGATTTTTGAGACTTAAGTTTTGTGCTTTGGATTGAAACATTTTCCGTGTTCTAACATGCCTCTTTTTCTTCCACATAACTCAAAGTTACCTGTTTTTTCAGGTATAAATTTGATGATGAACGTGTGACTAAAGAAGATGTGAAAAGAGCTCTAGAAGAGCAGTATGGAGGAGAAGAAGAGGTGATTCTTGATTTGATTTTACTCATTCACATATTTTCTTTGGATTGCAGATTTGCTGAGTTGTTTTTCATTTATCGTCTCTTTTTAATTTATATAGCAGTTGCCACAAACAAATCCTGGATTTAATAATACTCCCTTCAAATTTACTAAGTACTCAAATGCTTACATGCTGGTCTATATTCGGGAATGTGACAAAGAGAAAATAATGTGTAATGTTGACGAGAAGGACATTGCTGAGCACCTTAGGGTAAGATGCTGACTGCCGCATGAGTTGTTTTACTTTGTGTTGTTGCATTTGTTTATTGGTTTGCTGCTGACTAGACTAATGAACATGTTACAGGCAAGGTTAAAGAGAGAACAAGAAGAGAAAGAGCAGAAGAAGAAGGAGAAAGCAGAGGCACACCTTTACACAATTATAAAGGTATTTTCCTTAAATATTCCACCTTTTTCAGTGATTACTGGGACGAACGAGTGGTGTTTAAGTTGAGAAGTTTTGCACCTAATACATCACTGTTTCAGGTTTCTCGTGATGAAGACCTCAGACAGCAGATTGGGAAGGACATACATTTTGATTTAGTGGATTATGACAAAGTTAGGAGTTTTCGCATTCAGAAGCAGACACTTTTTAGCATTTTTAAGGTAATATGATATTCTTTTTTTTTTTTTGAGAAAGCCAACTTGTATTATAAACAAAAGAATACATACAGAGTATTCTAGTAATACTTACATCCAAAAGTTGCAAAAGGAAAAGAACTCCTATGGAATTGGAGGTCATAAGAACTCTAAAAGAGCTGTATCTCTATTTATGTTCCTAGGAGTTGTCATGTTGTATCTTGATTTATCAGAAGTATTTAATTAATACGGAACCTTTATAAACACTATAGAGGTGGGCGTAGGTTGGAGAAAAAGTTAACTTTCTTAAACCTATGCTTTGATTAGCTTATCCATTCGTGTCTTTGTTTTGGCTTTTTCGCTTATCGCTGGCCAAGGTCACACTAGTTCTGTGTTTTTGTGTCCATTATTGATGCAAATTAGGTTAGGGATCTATATTTTCGCGATTCACTTCCTTAAACTTTAAACTAGGTGAGATCTCTCTTGACTTGTGAAAATAGAAAAAAATATTTGAAATCTGTCTAGACTCTTGAGGCCTTTAAACTTTTTGCATGTAATCAAGCTTAGATGTAGTGGTTACAATGCCTCTGTTGACTAATTATGTTGCTGCATGCAGGAGGAAGTTGCCAAAGAATTTGGTGTACCAGTGCAATCTCAACGTTTTTGGTTATGGGCAAAGCGCCAGAATCATACATATCGTCCAAATCGGCCATTAACACATCTCGAAGAAGCTCAAACTGTAAATACTTTATTTAAATTTTTTAGACAGATCAAGTAAACTGTCCTTTTACCAGGATGTTTATTGACTTAAACAGGATGTTCTATACATTAGGCTCCTCATCTAGTGTTTGTGGACGCTAAAGAGTTGTAACCTAGTCCAACAAATCTAGGGTGAATACTGAATTTACCTGTATACATCAGCAACAACTATGTGTCAGTCCCAAATAAGTTGGGGTCATCTATATGGCTCCTCATTTCGCCATTTAAACTTAGGTTGAACCCTTATTTCTAACAAAAAAACAAAGAAAAAAGGATCTGCCTCCTTAGCAATCTATCTGCTGTGCCAAGATTTGCTCTCTTCATGGGATACTGATGTTTATTTATAATTTGCAAAGACAATATAACTTCAAAAGGTGTGACTCCGTTTTAAGGTGATTTAAATCAGGACATCACTGATCCCCACAAACCCCTACCCAAAGTCATGCTGACAGATCTCTGTGTTTGCTTAATTACCTGATAAGTGCTCCACAAATTTAGGTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTTCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTGGTAAAATATTCTTCACAATAATTTCCAGTGAAATGCTAATATAAAGTTTTTCTATTTATCAAGCATTATTTAATAGCATGTGCATAATTACAAGGACTTGAGACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAGGTAATATTGATTATCTTCTTTAATGTTCATTTTAATTAAACATTTTTTTTGTTGATTGGTGATTTGTCTCTTGTACTGAAGGTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAATGGCTGGCTATGCCCCTGATCAAGAGATTGAACTATATGAGGTTTGTTCGTAGAATATCTCTGGGTATTATTGATGGTCATTCAGTGACTATCATGACTTTTTTGGAAATTAGAAGTTTTAAAGATGCGATAGATAGACATCCATGCCATTCCAGAACTTGCAGTTGCTCTGACAACTGTTCCCCTTCCAGCCTTGTTATGCTGGTCATCAGCCAATAGTATCTGGATCTTCTCCCTTTAGCACATATGCTTACACTTTTCTGGTGTCTAGGTCCAAGACTAAATAAATGGCAAAATGTCTTGGCATTTCTTCTTCGCAGAGTTGTCGAAGTGGTAGCTTTCAAGAGTTGTAATTTTTACTCTTTTTATGGTTTATAGATCAAATCCTTGGTTTAGATTCGTTTGCAGTTCATGAGAAACAGAAGATTCAATTCCTTTGTAGCTAAACAACAATAGGAATGTAAAATATATATGTGTAGACCGAGAAAACTTAAGACTTTAAACTGAAGTTCAGAAGAAGACCAAATTGGTTAGAAGTTTTGTTACAAAATTTCAGACGGCAGATATTGTTAGGGAATGTAGTGTTAGGACTTCCAATTTAAAGGAAGAGCTTAAAATAAAATGACCACTATGTGGTCAAACTTCTGGTTCCTCTAGAAGCTTATGTTCCTGATTGGTTCCTTTACAAATTTAAATCTTACCTTCTATTTTGCATTGTGTGGGGGATAAACGTATGTCTAGGAGCTTATTTCGTGATGAGATCTTATGCAATCTATCTCGACATGTCATAGAATCCATATGATCTTTAATTCTTTTCTACTGTTTCTGGTTTGCTTTTGGATCAGAATCACTTTCCATAATTTGGAGACCTAATAATGCCTAGAGCATTCTAACTATCTTTAAGGAGACTATGTTTGGTCGTTTCACTTGTTCATTTGTTCTAAACCTCACATTTGCTTAATTTTGTTCAGGAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAGGTATACCTAATTACCATAAAGTGTGTAGTGGCAGGATTTTTCATTGATTTGTCTGATACTCATTTTTGTGCAGCTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAGGTAATCTATGTATAGATTTATCAGCTATTTTCTCTTCCATTTTGTCCTGTTAGTTACGTTTTCAACATTGCTGGTAATGGAGAATGGGTATTGTTTTTTTGCCTTATAGATAATGGGATACTGATTAGTGACCTTAGTCGCCCAGATTACTTGTGTCAAACTTAATAGATGAGAGAGAGATGTTTTGGGAAAACTTAATTGCTAAAGAAGTTTTTGATAGGCATATCTGCTGAATTTTAATATATCTTCTAAGATTACATTGTTTGGGCTGGTTTCTTTTGTTTAGAAGCTCTGTAGTAACTCAGAGTCTCAAATTTCCATGAAATATTTTAATCAGTGTTGCAACGAAAAATGATTGCTTAGATTCGGTCACTGACCCTGCTAACACAGGATGATTTGTGCACTGTGCTTCCCTTTAAGAAAAAAAGTTGTTTACTGAAATTTGATGATAAAGAAAAACGGGGTGGCTTGTATAAAATTTTCTCACTAGAAGCTAAACATGGACGCCACCATGGCAGGTTTGATTTTTTGGAATATAATACAAGACTGTTGCCTTCTCAAAAAAATAAATAAAGTGTAAACCTTACTTGAGTAGAGAAAATAGGCAGTTCCCGACTAAGTTGCTCTTACTCTTCAATTTTGGTGCCGCACCCGTGTCGAAGTGGGGAGGGGGTCTTCGAGGCACAGCGCCCCGGGTTTGTGGTGGGGGGGAGGGGGACCTTGGGGCACCCACTTTGTTCCTTGCGTTTACTATAAATAAACAATTTTTGGATGTACTATTTACCAACATTCCCTTTTGCTGGTTTACATCTATAATACACCTTCATTACTTATTTAAAAAAAGTTTTTACTTGTGGTTCCCTGGTAAAAAAATCAAGTTCTGTTTATAATGACATGAGATGGGTTAAGCATAAATAGACCTTACTTCCAAAAGAAACTTTGTGATGTCCTTATCCTGTTCCATATTCAATGAAATATGACACTGAAATTTGTCTTTGGCTTAACTATTTATTTGTTAAATATTTTATGATCTACTATAATATGTCTTACAGGTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCTGTATGTTCTAAAACTTTGCTACTCTTTTTTTTCTTTTTATTATATATTATAAAGGTAGAGTAGATGATTCACCTCTAGGTTTTATCTTTATTACTTTCTCAAGCATTTTATTGTTATGAAAAGGTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCATCCAAAATAAGGCTCACACCCCATAATTGTTACTCTCAGCAACCTAAACCCCAGCCGATCAAGTACAGAGGTGTTGACACCCTTGGAGATATGCTGGTCCACTACAATCAGGTGAATTTTAACATTGACTAATAATAATGAACATTAGTTTCTGAAAGTCTTAACTATTTTAACTACTCGTTGACAGACATCTGATATTTTGTACTATGAAGTACTGGACATTCCTTTGCCAGAATTGCAAGGTTTAAAAACCTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAAGTAAGCATGCTGCTCTGATTTCCATTGATTTACGAGCACAATTTTTTACTTCTGAATTCTTGCTTTGATAATTACTTAAATTTCTCCTCCTTCGCTATGTAGGTGGTCACTTACACTATCAGACTACCAAAACAATCTACTGTTGGTGATGTAATTAATGATTTAAAGACGAAGGTAAAATGGTAAACTCGGTCTGATATTCCCTACTTTCAACGTGTCTGTGAACTGAAAACTTACTATTCTCCTTTATTGATGCTTCTATATTGTTAGCTTTACTTGATGCTACTCTGCTATGCTGCATAATAGGTAGAGTTGTCAAATCCAGATGCAGAATTAAGATTGCTAGAGGTCTTCTACCACAAAA</genome_strand>
        <mrna_strand>ACTCTTTCAGATCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAAATTTGATGATGAACGTGTGACTAAAGAAGATGTGAAAAGAGCTCTAGAAGAGCAGTATGGAGGAGAAGAAGAG....................................................................................................TTGCCACAAACAAATCCTGGATTTAATAATACTCCCTTCAAATTTACTAAGTATTCAAATGCTTACATGCTGGTCTATATTCGGGAATGTGACAAAGAGAAAATAATGTGTAATGTTGACGAGAAGGACATTGCTGAGCACCTCAGG.............................................................................................GCAAGGTTAAAGAGAGAACAAGAAGAGAAAGAGCAGAAGAAGAAGGAGAAAGCAGAGGCACACCTTTACACAATTATAAAG..................................................................................................GTTTCTCGTGATGAAGACCTCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTGATATTTTGTACTATGAAGTACTGGACATTCCTTTGCCAGAATTGCAAGGTTTAAAAACCTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAA......................................................................................................GTGGTCACTTACACTATCAGACTACCAAAACAATCTACTGTTGGTGATGTAATTAATGATCTAAAGACAAAG....................................................................................................................................GTTGAGTTGTCAAATCCAGATGGCGAATTAAGATTGCTAGAGGTCTTCTACCACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327341" ref_strand="+" ref_description="SGN-E327341 [cTOC-19-L6]">
      <seq>ggatttaataatactcccttcaaatttactaagtactcaaatgcttacatgctggtctatattcgggaatgtgacaaagagaaaataatgtgtaatgttgacgagaaggacattgctgagcaccttagggcaaggttaaagagagaacaagaagagaaagagcagaagaagaaggagaaagcagaggcacacctttacacaattataaaggtttctcgtgatgaagacctcagacagcagattgggaaggacatacattttgatttagtggattatgacaaagttaggagttttcgcattcagaagcagacactttttagcatttttaaggaggaagttgccaaagaatttggtgtaccagtgcaatctcaacgtttttggttatgggcaaagcgccagaatcatacatatcgtccaaatcggccattaacacatctcgaagaagctcaaactgttggacagttgagggaagcgtcaagtaaggttcagaatgcagaggctaaattgttcctggaagtggagcttggactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="37102" stop="39531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37402" g_stop="37530" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37531" i_stop="37623" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37624" g_stop="37704" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="210" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37705" i_stop="37802" i_length="98">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37803" g_stop="37922" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="330" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37923" i_stop="38511" i_length="589">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38512" g_stop="38634" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="453" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38635" i_stop="39152" i_length="518">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39153" g_stop="39230" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="531" r_length="78" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E327341" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37402" e_stop="37530"/>
          <exon e_start="37624" e_stop="37704"/>
          <exon e_start="37803" e_stop="37922"/>
          <exon e_start="38512" e_stop="38634"/>
          <exon e_start="39153" e_stop="39230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTAATAATACTCCCTTCAAATTTACTAAGTACTCAAATGCTTACATGCTGGTCTATATTCGGGAATGTGACAAAGAGAAAATAATGTGTAATGTTGACGAGAAGGACATTGCTGAGCACCTTAGGGTAAGATGCTGACTGCCGCATGAGTTGTTTTACTTTGTGTTGTTGCATTTGTTTATTGGTTTGCTGCTGACTAGACTAATGAACATGTTACAGGCAAGGTTAAAGAGAGAACAAGAAGAGAAAGAGCAGAAGAAGAAGGAGAAAGCAGAGGCACACCTTTACACAATTATAAAGGTATTTTCCTTAAATATTCCACCTTTTTCAGTGATTACTGGGACGAACGAGTGGTGTTTAAGTTGAGAAGTTTTGCACCTAATACATCACTGTTTCAGGTTTCTCGTGATGAAGACCTCAGACAGCAGATTGGGAAGGACATACATTTTGATTTAGTGGATTATGACAAAGTTAGGAGTTTTCGCATTCAGAAGCAGACACTTTTTAGCATTTTTAAGGTAATATGATATTCTTTTTTTTTTTTTGAGAAAGCCAACTTGTATTATAAACAAAAGAATACATACAGAGTATTCTAGTAATACTTACATCCAAAAGTTGCAAAAGGAAAAGAACTCCTATGGAATTGGAGGTCATAAGAACTCTAAAAGAGCTGTATCTCTATTTATGTTCCTAGGAGTTGTCATGTTGTATCTTGATTTATCAGAAGTATTTAATTAATACGGAACCTTTATAAACACTATAGAGGTGGGCGTAGGTTGGAGAAAAAGTTAACTTTCTTAAACCTATGCTTTGATTAGCTTATCCATTCGTGTCTTTGTTTTGGCTTTTTCGCTTATCGCTGGCCAAGGTCACACTAGTTCTGTGTTTTTGTGTCCATTATTGATGCAAATTAGGTTAGGGATCTATATTTTCGCGATTCACTTCCTTAAACTTTAAACTAGGTGAGATCTCTCTTGACTTGTGAAAATAGAAAAAAATATTTGAAATCTGTCTAGACTCTTGAGGCCTTTAAACTTTTTGCATGTAATCAAGCTTAGATGTAGTGGTTACAATGCCTCTGTTGACTAATTATGTTGCTGCATGCAGGAGGAAGTTGCCAAAGAATTTGGTGTACCAGTGCAATCTCAACGTTTTTGGTTATGGGCAAAGCGCCAGAATCATACATATCGTCCAAATCGGCCATTAACACATCTCGAAGAAGCTCAAACTGTAAATACTTTATTTAAATTTTTTAGACAGATCAAGTAAACTGTCCTTTTACCAGGATGTTTATTGACTTAAACAGGATGTTCTATACATTAGGCTCCTCATCTAGTGTTTGTGGACGCTAAAGAGTTGTAACCTAGTCCAACAAATCTAGGGTGAATACTGAATTTACCTGTATACATCAGCAACAACTATGTGTCAGTCCCAAATAAGTTGGGGTCATCTATATGGCTCCTCATTTCGCCATTTAAACTTAGGTTGAACCCTTATTTCTAACAAAAAAACAAAGAAAAAAGGATCTGCCTCCTTAGCAATCTATCTGCTGTGCCAAGATTTGCTCTCTTCATGGGATACTGATGTTTATTTATAATTTGCAAAGACAATATAACTTCAAAAGGTGTGACTCCGTTTTAAGGTGATTTAAATCAGGACATCACTGATCCCCACAAACCCCTACCCAAAGTCATGCTGACAGATCTCTGTGTTTGCTTAATTACCTGATAAGTGCTCCACAAATTTAGGTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTTCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTG</genome_strand>
        <mrna_strand>GGATTTAATAATACTCCCTTCAAATTTACTAAGTACTCAAATGCTTACATGCTGGTCTATATTCGGGAATGTGACAAAGAGAAAATAATGTGTAATGTTGACGAGAAGGACATTGCTGAGCACCTTAGG.............................................................................................GCAAGGTTAAAGAGAGAACAAGAAGAGAAAGAGCAGAAGAAGAAGGAGAAAGCAGAGGCACACCTTTACACAATTATAAAG..................................................................................................GTTTCTCGTGATGAAGACCTCAGACAGCAGATTGGGAAGGACATACATTTTGATTTAGTGGATTATGACAAAGTTAGGAGTTTTCGCATTCAGAAGCAGACACTTTTTAGCATTTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTTGCCAAAGAATTTGGTGTACCAGTGCAATCTCAACGTTTTTGGTTATGGGCAAAGCGCCAGAATCATACATATCGTCCAAATCGGCCATTAACACATCTCGAAGAAGCTCAAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTTCAGAATGCAGAGGCTAAATTGTTCCTGGAAGTGGAGCTTGGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319910" ref_strand="+" ref_description="SGN-E319910 [cTOB-12-L13]">
      <seq>ttgctgagcaccttagggcaaggttaaagagagaacaagaagagaaagagcagaagaagaaggagaaagcagaggcacacctttacacaattataaaggtttctcgtgatgaagacctcagacagcagattgggaaggacatacattttgatttagtggattatgacaaagttaggagttttcgcattcagaagcagacactttttagcatttttaaggaggaagttgccaaagaatttggtgtaccagtgcaatctcaacgtttttggttatgggcaaagcgccagaatcatacatatcgtccaaatcggccattaacacatctcgaagaagctcaaactgttggacagttgagggaagcgtcaagtaaggttcagaatgcagagctaaaattgttcttggaagtggagcttggactggacttgagacacatccctccacctgacaagactaaagatgatattatgctattcttcaagatttatgatcctgagaaagaagagctgaggtatgctggaagactctttgtaaagggaacgagtaatccaactgaaatcttgaacaaactaaatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="37214" stop="39862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37514" g_stop="37530" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37531" i_stop="37623" i_length="93">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37624" g_stop="37704" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="98" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37705" i_stop="37802" i_length="98">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37803" g_stop="37922" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="218" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37923" i_stop="38511" i_length="589">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38512" g_stop="38634" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="341" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38635" i_stop="39152" i_length="518">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39153" g_stop="39230" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="419" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39231" i_stop="39324" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39325" g_stop="39413" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="508" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39414" i_stop="39494" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39495" g_stop="39562" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="576" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E319910" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37514" e_stop="37530"/>
          <exon e_start="37624" e_stop="37704"/>
          <exon e_start="37803" e_stop="37922"/>
          <exon e_start="38512" e_stop="38634"/>
          <exon e_start="39153" e_stop="39230"/>
          <exon e_start="39325" e_stop="39413"/>
          <exon e_start="39495" e_stop="39562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGAGCACCTTAGGGTAAGATGCTGACTGCCGCATGAGTTGTTTTACTTTGTGTTGTTGCATTTGTTTATTGGTTTGCTGCTGACTAGACTAATGAACATGTTACAGGCAAGGTTAAAGAGAGAACAAGAAGAGAAAGAGCAGAAGAAGAAGGAGAAAGCAGAGGCACACCTTTACACAATTATAAAGGTATTTTCCTTAAATATTCCACCTTTTTCAGTGATTACTGGGACGAACGAGTGGTGTTTAAGTTGAGAAGTTTTGCACCTAATACATCACTGTTTCAGGTTTCTCGTGATGAAGACCTCAGACAGCAGATTGGGAAGGACATACATTTTGATTTAGTGGATTATGACAAAGTTAGGAGTTTTCGCATTCAGAAGCAGACACTTTTTAGCATTTTTAAGGTAATATGATATTCTTTTTTTTTTTTTGAGAAAGCCAACTTGTATTATAAACAAAAGAATACATACAGAGTATTCTAGTAATACTTACATCCAAAAGTTGCAAAAGGAAAAGAACTCCTATGGAATTGGAGGTCATAAGAACTCTAAAAGAGCTGTATCTCTATTTATGTTCCTAGGAGTTGTCATGTTGTATCTTGATTTATCAGAAGTATTTAATTAATACGGAACCTTTATAAACACTATAGAGGTGGGCGTAGGTTGGAGAAAAAGTTAACTTTCTTAAACCTATGCTTTGATTAGCTTATCCATTCGTGTCTTTGTTTTGGCTTTTTCGCTTATCGCTGGCCAAGGTCACACTAGTTCTGTGTTTTTGTGTCCATTATTGATGCAAATTAGGTTAGGGATCTATATTTTCGCGATTCACTTCCTTAAACTTTAAACTAGGTGAGATCTCTCTTGACTTGTGAAAATAGAAAAAAATATTTGAAATCTGTCTAGACTCTTGAGGCCTTTAAACTTTTTGCATGTAATCAAGCTTAGATGTAGTGGTTACAATGCCTCTGTTGACTAATTATGTTGCTGCATGCAGGAGGAAGTTGCCAAAGAATTTGGTGTACCAGTGCAATCTCAACGTTTTTGGTTATGGGCAAAGCGCCAGAATCATACATATCGTCCAAATCGGCCATTAACACATCTCGAAGAAGCTCAAACTGTAAATACTTTATTTAAATTTTTTAGACAGATCAAGTAAACTGTCCTTTTACCAGGATGTTTATTGACTTAAACAGGATGTTCTATACATTAGGCTCCTCATCTAGTGTTTGTGGACGCTAAAGAGTTGTAACCTAGTCCAACAAATCTAGGGTGAATACTGAATTTACCTGTATACATCAGCAACAACTATGTGTCAGTCCCAAATAAGTTGGGGTCATCTATATGGCTCCTCATTTCGCCATTTAAACTTAGGTTGAACCCTTATTTCTAACAAAAAAACAAAGAAAAAAGGATCTGCCTCCTTAGCAATCTATCTGCTGTGCCAAGATTTGCTCTCTTCATGGGATACTGATGTTTATTTATAATTTGCAAAGACAATATAACTTCAAAAGGTGTGACTCCGTTTTAAGGTGATTTAAATCAGGACATCACTGATCCCCACAAACCCCTACCCAAAGTCATGCTGACAGATCTCTGTGTTTGCTTAATTACCTGATAAGTGCTCCACAAATTTAGGTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTTCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTGGTAAAATATTCTTCACAATAATTTCCAGTGAAATGCTAATATAAAGTTTTTCTATTTATCAAGCATTATTTAATAGCATGTGCATAATTACAAGGACTTGAGACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAGGTAATATTGATTATCTTCTTTAATGTTCATTTTAATTAAACATTTTTTTTGTTGATTGGTGATTTGTCTCTTGTACTGAAGGTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAA</genome_strand>
        <mrna_strand>TTGCTGAGCACCTTAGG.............................................................................................GCAAGGTTAAAGAGAGAACAAGAAGAGAAAGAGCAGAAGAAGAAGGAGAAAGCAGAGGCACACCTTTACACAATTATAAAG..................................................................................................GTTTCTCGTGATGAAGACCTCAGACAGCAGATTGGGAAGGACATACATTTTGATTTAGTGGATTATGACAAAGTTAGGAGTTTTCGCATTCAGAAGCAGACACTTTTTAGCATTTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTTGCCAAAGAATTTGGTGTACCAGTGCAATCTCAACGTTTTTGGTTATGGGCAAAGCGCCAGAATCATACATATCGTCCAAATCGGCCATTAACACATCTCGAAGAAGCTCAAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTTCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTG..............................................................................................GACTTGAGACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAG.................................................................................GTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212432" ref_strand="+" ref_description="SGN-E212432 [cLEC-74-B12]">
      <seq>agcagacactttttagcatttttaaggaggaagttgccaaagaatttggtgtaccagtgcaatctcaacgtttttggttatgggcaaagcgccagaatcatacatatcgtccaaatcggccattaacacatctcgaagaagctcaaactgttggacagttgagggaagcgtcaagtaaggttcagaatgcagagctaaaattgttcttggaagtggagcttggactggacttgagacacatccctccacctgacaagactaaagatgatattatgctattcttcaagatttatgatcctgagaaagaagagctgaggtatgctggaagactctttgtaaagggaacgagtaatccaactgaaatcttgaacaaactaaatgaaatggctggctatgcccctgatcaagagattgaactatatgaggaaataaaatttgaaccgattgtcttgtgtgaacccattaacaagaaatttgctttccgaacgaaccagcttgaggatggtgatatagtatgctatcagaaatccctttctcctgaaagtcgccagaagttacggtatccagatgttccttctttcctggagtatgttcaaaatcgccaggtggttcacttccgatacttagaaaagttgaaggaggatgatttctgtttagagctgtcaaagattatacatatgatgaagttgtggaaagagtagctcagcgacttggcttggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="37597" stop="42380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37897" g_stop="37922" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37923" i_stop="38511" i_length="589">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38512" g_stop="38634" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="149" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38635" i_stop="39152" i_length="518">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39153" g_stop="39230" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="227" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39231" i_stop="39324" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39325" g_stop="39413" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="316" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39414" i_stop="39494" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39495" g_stop="39603" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="425" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39604" i_stop="40533" i_length="930">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40534" g_stop="40602" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="494" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="40603" i_stop="40675" i_length="73">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40676" g_stop="40786" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="605" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40787" i_stop="41838" i_length="1052">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="41839" g_stop="41894" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="661" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="41895" i_stop="42017" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="42018" g_stop="42080" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="723" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E212432" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37897" e_stop="37922"/>
          <exon e_start="38512" e_stop="38634"/>
          <exon e_start="39153" e_stop="39230"/>
          <exon e_start="39325" e_stop="39413"/>
          <exon e_start="39495" e_stop="39603"/>
          <exon e_start="40534" e_stop="40602"/>
          <exon e_start="40676" e_stop="40786"/>
          <exon e_start="41839" e_stop="41894"/>
          <exon e_start="42018" e_stop="42080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGACACTTTTTAGCATTTTTAAGGTAATATGATATTCTTTTTTTTTTTTTGAGAAAGCCAACTTGTATTATAAACAAAAGAATACATACAGAGTATTCTAGTAATACTTACATCCAAAAGTTGCAAAAGGAAAAGAACTCCTATGGAATTGGAGGTCATAAGAACTCTAAAAGAGCTGTATCTCTATTTATGTTCCTAGGAGTTGTCATGTTGTATCTTGATTTATCAGAAGTATTTAATTAATACGGAACCTTTATAAACACTATAGAGGTGGGCGTAGGTTGGAGAAAAAGTTAACTTTCTTAAACCTATGCTTTGATTAGCTTATCCATTCGTGTCTTTGTTTTGGCTTTTTCGCTTATCGCTGGCCAAGGTCACACTAGTTCTGTGTTTTTGTGTCCATTATTGATGCAAATTAGGTTAGGGATCTATATTTTCGCGATTCACTTCCTTAAACTTTAAACTAGGTGAGATCTCTCTTGACTTGTGAAAATAGAAAAAAATATTTGAAATCTGTCTAGACTCTTGAGGCCTTTAAACTTTTTGCATGTAATCAAGCTTAGATGTAGTGGTTACAATGCCTCTGTTGACTAATTATGTTGCTGCATGCAGGAGGAAGTTGCCAAAGAATTTGGTGTACCAGTGCAATCTCAACGTTTTTGGTTATGGGCAAAGCGCCAGAATCATACATATCGTCCAAATCGGCCATTAACACATCTCGAAGAAGCTCAAACTGTAAATACTTTATTTAAATTTTTTAGACAGATCAAGTAAACTGTCCTTTTACCAGGATGTTTATTGACTTAAACAGGATGTTCTATACATTAGGCTCCTCATCTAGTGTTTGTGGACGCTAAAGAGTTGTAACCTAGTCCAACAAATCTAGGGTGAATACTGAATTTACCTGTATACATCAGCAACAACTATGTGTCAGTCCCAAATAAGTTGGGGTCATCTATATGGCTCCTCATTTCGCCATTTAAACTTAGGTTGAACCCTTATTTCTAACAAAAAAACAAAGAAAAAAGGATCTGCCTCCTTAGCAATCTATCTGCTGTGCCAAGATTTGCTCTCTTCATGGGATACTGATGTTTATTTATAATTTGCAAAGACAATATAACTTCAAAAGGTGTGACTCCGTTTTAAGGTGATTTAAATCAGGACATCACTGATCCCCACAAACCCCTACCCAAAGTCATGCTGACAGATCTCTGTGTTTGCTTAATTACCTGATAAGTGCTCCACAAATTTAGGTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTTCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTGGTAAAATATTCTTCACAATAATTTCCAGTGAAATGCTAATATAAAGTTTTTCTATTTATCAAGCATTATTTAATAGCATGTGCATAATTACAAGGACTTGAGACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAGGTAATATTGATTATCTTCTTTAATGTTCATTTTAATTAAACATTTTTTTTGTTGATTGGTGATTTGTCTCTTGTACTGAAGGTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAATGGCTGGCTATGCCCCTGATCAAGAGATTGAACTATATGAGGTTTGTTCGTAGAATATCTCTGGGTATTATTGATGGTCATTCAGTGACTATCATGACTTTTTTGGAAATTAGAAGTTTTAAAGATGCGATAGATAGACATCCATGCCATTCCAGAACTTGCAGTTGCTCTGACAACTGTTCCCCTTCCAGCCTTGTTATGCTGGTCATCAGCCAATAGTATCTGGATCTTCTCCCTTTAGCACATATGCTTACACTTTTCTGGTGTCTAGGTCCAAGACTAAATAAATGGCAAAATGTCTTGGCATTTCTTCTTCGCAGAGTTGTCGAAGTGGTAGCTTTCAAGAGTTGTAATTTTTACTCTTTTTATGGTTTATAGATCAAATCCTTGGTTTAGATTCGTTTGCAGTTCATGAGAAACAGAAGATTCAATTCCTTTGTAGCTAAACAACAATAGGAATGTAAAATATATATGTGTAGACCGAGAAAACTTAAGACTTTAAACTGAAGTTCAGAAGAAGACCAAATTGGTTAGAAGTTTTGTTACAAAATTTCAGACGGCAGATATTGTTAGGGAATGTAGTGTTAGGACTTCCAATTTAAAGGAAGAGCTTAAAATAAAATGACCACTATGTGGTCAAACTTCTGGTTCCTCTAGAAGCTTATGTTCCTGATTGGTTCCTTTACAAATTTAAATCTTACCTTCTATTTTGCATTGTGTGGGGGATAAACGTATGTCTAGGAGCTTATTTCGTGATGAGATCTTATGCAATCTATCTCGACATGTCATAGAATCCATATGATCTTTAATTCTTTTCTACTGTTTCTGGTTTGCTTTTGGATCAGAATCACTTTCCATAATTTGGAGACCTAATAATGCCTAGAGCATTCTAACTATCTTTAAGGAGACTATGTTTGGTCGTTTCACTTGTTCATTTGTTCTAAACCTCACATTTGCTTAATTTTGTTCAGGAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAGGTATACCTAATTACCATAAAGTGTGTAGTGGCAGGATTTTTCATTGATTTGTCTGATACTCATTTTTGTGCAGCTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAGGTAATCTATGTATAGATTTATCAGCTATTTTCTCTTCCATTTTGTCCTGTTAGTTACGTTTTCAACATTGCTGGTAATGGAGAATGGGTATTGTTTTTTTGCCTTATAGATAATGGGATACTGATTAGTGACCTTAGTCGCCCAGATTACTTGTGTCAAACTTAATAGATGAGAGAGAGATGTTTTGGGAAAACTTAATTGCTAAAGAAGTTTTTGATAGGCATATCTGCTGAATTTTAATATATCTTCTAAGATTACATTGTTTGGGCTGGTTTCTTTTGTTTAGAAGCTCTGTAGTAACTCAGAGTCTCAAATTTCCATGAAATATTTTAATCAGTGTTGCAACGAAAAATGATTGCTTAGATTCGGTCACTGACCCTGCTAACACAGGATGATTTGTGCACTGTGCTTCCCTTTAAGAAAAAAAGTTGTTTACTGAAATTTGATGATAAAGAAAAACGGGGTGGCTTGTATAAAATTTTCTCACTAGAAGCTAAACATGGACGCCACCATGGCAGGTTTGATTTTTTGGAATATAATACAAGACTGTTGCCTTCTCAAAAAAATAAATAAAGTGTAAACCTTACTTGAGTAGAGAAAATAGGCAGTTCCCGACTAAGTTGCTCTTACTCTTCAATTTTGGTGCCGCACCCGTGTCGAAGTGGGGAGGGGGTCTTCGAGGCACAGCGCCCCGGGTTTGTGGTGGGGGGGAGGGGGACCTTGGGGCACCCACTTTGTTCCTTGCGTTTACTATAAATAAACAATTTTTGGATGTACTATTTACCAACATTCCCTTTTGCTGGTTTACATCTATAATACACCTTCATTACTTATTTAAAAAAAGTTTTTACTTGTGGTTCCCTGGTAAAAAAATCAAGTTCTGTTTATAATGACATGAGATGGGTTAAGCATAAATAGACCTTACTTCCAAAAGAAACTTTGTGATGTCCTTATCCTGTTCCATATTCAATGAAATATGACACTGAAATTTGTCTTTGGCTTAACTATTTATTTGTTAAATATTTTATGATCTACTATAATATGTCTTACAGGTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCTGTATGTTCTAAAACTTTGCTACTCTTTTTTTTCTTTTTATTATATATTATAAAGGTAGAGTAGATGATTCACCTCTAGGTTTTATCTTTATTACTTTCTCAAGCATTTTATTGTTATGAAAAGGTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGA</genome_strand>
        <mrna_strand>AGCAGACACTTTTTAGCATTTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTTGCCAAAGAATTTGGTGTACCAGTGCAATCTCAACGTTTTTGGTTATGGGCAAAGCGCCAGAATCATACATATCGTCCAAATCGGCCATTAACACATCTCGAAGAAGCTCAAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTTCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTG..............................................................................................GACTTGAGACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAG.................................................................................GTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAATGGCTGGCTATGCCCCTGATCAAGAGATTGAACTATATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAG.........................................................................CTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCT...........................................................................................................................GTCAAAGATT-ATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245705" ref_strand="+" ref_description="SGN-E245705 [cLEF-48-C4]">
      <seq>caaatttaggttggacagttgagggaagcgtcaagtaaggtgtcagaatgcagagctaaaattgttcttggaagtggagcttggactgcatgtgcataattacaaggacttgagacacatccctccacctgacaagactaaagatgatattatgctattcttcaagatttatgatcctgagaaagaagagctgaggtatgctggaagactctttgtaaagggaacgagtaatccaactgaaatcttgaacaaactaaatgaaatggctggctatgcccctgatcaagagattgaactatatgaggaaataaaatttgaaccgattgtcttgtgtgaacccattaacaagaaatttgctttccgaacgaaccagcttgaggatggtgatatagtatgctatcagaaatccctttctcctgaaagtcgccagaagttacggtatccagatgttccttctttcctggagtatgttcaaaatcgccaggtggttcacttccgatacttagaaaagttgaaggaggatgatttctgtttagagctgtcaaagattaatacatatgatgaagttgtggaaagagtagctcagcgacttggcttggatgatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="38844" stop="42384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39144" g_stop="39230" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39231" i_stop="39306" i_length="76">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39307" g_stop="39413" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="195" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39414" i_stop="39494" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39495" g_stop="39603" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="304" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39604" i_stop="40533" i_length="930">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40534" g_stop="40602" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="373" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40603" i_stop="40675" i_length="73">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40676" g_stop="40786" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="484" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40787" i_stop="41838" i_length="1052">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41839" g_stop="41894" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="540" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41895" i_stop="42017" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42018" g_stop="42084" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="607" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E245705" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39144" e_stop="39230"/>
          <exon e_start="39307" e_stop="39413"/>
          <exon e_start="39495" e_stop="39603"/>
          <exon e_start="40534" e_stop="40602"/>
          <exon e_start="40676" e_stop="40786"/>
          <exon e_start="41839" e_stop="41894"/>
          <exon e_start="42018" e_stop="42084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTAGGTTGGACAGTTGAGGGAAGCGTCAAGTAAGGT-TCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTGGTAAAATATTCTTCACAATAATTTCCAGTGAAATGCTAATATAAAGTTTTTCTATTTATCAAGCATTATTTAATAGCATGTGCATAATTACAAGGACTTGAGACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAGGTAATATTGATTATCTTCTTTAATGTTCATTTTAATTAAACATTTTTTTTGTTGATTGGTGATTTGTCTCTTGTACTGAAGGTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAATGGCTGGCTATGCCCCTGATCAAGAGATTGAACTATATGAGGTTTGTTCGTAGAATATCTCTGGGTATTATTGATGGTCATTCAGTGACTATCATGACTTTTTTGGAAATTAGAAGTTTTAAAGATGCGATAGATAGACATCCATGCCATTCCAGAACTTGCAGTTGCTCTGACAACTGTTCCCCTTCCAGCCTTGTTATGCTGGTCATCAGCCAATAGTATCTGGATCTTCTCCCTTTAGCACATATGCTTACACTTTTCTGGTGTCTAGGTCCAAGACTAAATAAATGGCAAAATGTCTTGGCATTTCTTCTTCGCAGAGTTGTCGAAGTGGTAGCTTTCAAGAGTTGTAATTTTTACTCTTTTTATGGTTTATAGATCAAATCCTTGGTTTAGATTCGTTTGCAGTTCATGAGAAACAGAAGATTCAATTCCTTTGTAGCTAAACAACAATAGGAATGTAAAATATATATGTGTAGACCGAGAAAACTTAAGACTTTAAACTGAAGTTCAGAAGAAGACCAAATTGGTTAGAAGTTTTGTTACAAAATTTCAGACGGCAGATATTGTTAGGGAATGTAGTGTTAGGACTTCCAATTTAAAGGAAGAGCTTAAAATAAAATGACCACTATGTGGTCAAACTTCTGGTTCCTCTAGAAGCTTATGTTCCTGATTGGTTCCTTTACAAATTTAAATCTTACCTTCTATTTTGCATTGTGTGGGGGATAAACGTATGTCTAGGAGCTTATTTCGTGATGAGATCTTATGCAATCTATCTCGACATGTCATAGAATCCATATGATCTTTAATTCTTTTCTACTGTTTCTGGTTTGCTTTTGGATCAGAATCACTTTCCATAATTTGGAGACCTAATAATGCCTAGAGCATTCTAACTATCTTTAAGGAGACTATGTTTGGTCGTTTCACTTGTTCATTTGTTCTAAACCTCACATTTGCTTAATTTTGTTCAGGAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAGGTATACCTAATTACCATAAAGTGTGTAGTGGCAGGATTTTTCATTGATTTGTCTGATACTCATTTTTGTGCAGCTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAGGTAATCTATGTATAGATTTATCAGCTATTTTCTCTTCCATTTTGTCCTGTTAGTTACGTTTTCAACATTGCTGGTAATGGAGAATGGGTATTGTTTTTTTGCCTTATAGATAATGGGATACTGATTAGTGACCTTAGTCGCCCAGATTACTTGTGTCAAACTTAATAGATGAGAGAGAGATGTTTTGGGAAAACTTAATTGCTAAAGAAGTTTTTGATAGGCATATCTGCTGAATTTTAATATATCTTCTAAGATTACATTGTTTGGGCTGGTTTCTTTTGTTTAGAAGCTCTGTAGTAACTCAGAGTCTCAAATTTCCATGAAATATTTTAATCAGTGTTGCAACGAAAAATGATTGCTTAGATTCGGTCACTGACCCTGCTAACACAGGATGATTTGTGCACTGTGCTTCCCTTTAAGAAAAAAAGTTGTTTACTGAAATTTGATGATAAAGAAAAACGGGGTGGCTTGTATAAAATTTTCTCACTAGAAGCTAAACATGGACGCCACCATGGCAGGTTTGATTTTTTGGAATATAATACAAGACTGTTGCCTTCTCAAAAAAATAAATAAAGTGTAAACCTTACTTGAGTAGAGAAAATAGGCAGTTCCCGACTAAGTTGCTCTTACTCTTCAATTTTGGTGCCGCACCCGTGTCGAAGTGGGGAGGGGGTCTTCGAGGCACAGCGCCCCGGGTTTGTGGTGGGGGGGAGGGGGACCTTGGGGCACCCACTTTGTTCCTTGCGTTTACTATAAATAAACAATTTTTGGATGTACTATTTACCAACATTCCCTTTTGCTGGTTTACATCTATAATACACCTTCATTACTTATTTAAAAAAAGTTTTTACTTGTGGTTCCCTGGTAAAAAAATCAAGTTCTGTTTATAATGACATGAGATGGGTTAAGCATAAATAGACCTTACTTCCAAAAGAAACTTTGTGATGTCCTTATCCTGTTCCATATTCAATGAAATATGACACTGAAATTTGTCTTTGGCTTAACTATTTATTTGTTAAATATTTTATGATCTACTATAATATGTCTTACAGGTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCTGTATGTTCTAAAACTTTGCTACTCTTTTTTTTCTTTTTATTATATATTATAAAGGTAGAGTAGATGATTCACCTCTAGGTTTTATCTTTATTACTTTCTCAAGCATTTTATTGTTATGAAAAGGTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCA</genome_strand>
        <mrna_strand>CAAATTTAGGTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTGTCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTG............................................................................CATGTGCATAATTACAAGGACTTGAGACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAG.................................................................................GTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAATGGCTGGCTATGCCCCTGATCAAGAGATTGAACTATATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAG.........................................................................CTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCT...........................................................................................................................GTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336681" ref_strand="+" ref_description="SGN-E336681 [cTOE-4-L18]">
      <seq>acacatccctccacctgacaagactaaagatgatattatgctattcttcaagatttatgatcctgagaaagaagagctgaggtatgctggaagactctttgtaaagggaacgagtaatccaactgaaatcttgaacaaactaaatgaaatggctggctatgcccctgatcaagagattgaactatatgaggaaataaaatttgaaccgattgtcttgtgtgaacccattaacaagaaatttgctttccgaacgaaccagcttgaggatggtgatatagtatgctatcagaaatccctttctcctgaaagtcgccagaagttacggtatccagatgttccttctttcctggagtatgttcaaaatcgccaggtggttcacttccgatacttagaaaagttgaaggaggatgatttctgtttagagctgtcaaagattaatacatatgatgaagttgtggaaagagtagctcagcgacttggcttggatgatccatccaaaataaggctcacaccccataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="39033" stop="42410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39333" g_stop="39413" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39414" i_stop="39494" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39495" g_stop="39603" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="190" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39604" i_stop="40533" i_length="930">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40534" g_stop="40602" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="259" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40603" i_stop="40675" i_length="73">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40676" g_stop="40786" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="370" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40787" i_stop="41838" i_length="1052">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41839" g_stop="41894" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="426" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41895" i_stop="42017" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42018" g_stop="42110" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="519" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E336681" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39333" e_stop="39413"/>
          <exon e_start="39495" e_stop="39603"/>
          <exon e_start="40534" e_stop="40602"/>
          <exon e_start="40676" e_stop="40786"/>
          <exon e_start="41839" e_stop="41894"/>
          <exon e_start="42018" e_stop="42110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAGGTAATATTGATTATCTTCTTTAATGTTCATTTTAATTAAACATTTTTTTTGTTGATTGGTGATTTGTCTCTTGTACTGAAGGTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAATGGCTGGCTATGCCCCTGATCAAGAGATTGAACTATATGAGGTTTGTTCGTAGAATATCTCTGGGTATTATTGATGGTCATTCAGTGACTATCATGACTTTTTTGGAAATTAGAAGTTTTAAAGATGCGATAGATAGACATCCATGCCATTCCAGAACTTGCAGTTGCTCTGACAACTGTTCCCCTTCCAGCCTTGTTATGCTGGTCATCAGCCAATAGTATCTGGATCTTCTCCCTTTAGCACATATGCTTACACTTTTCTGGTGTCTAGGTCCAAGACTAAATAAATGGCAAAATGTCTTGGCATTTCTTCTTCGCAGAGTTGTCGAAGTGGTAGCTTTCAAGAGTTGTAATTTTTACTCTTTTTATGGTTTATAGATCAAATCCTTGGTTTAGATTCGTTTGCAGTTCATGAGAAACAGAAGATTCAATTCCTTTGTAGCTAAACAACAATAGGAATGTAAAATATATATGTGTAGACCGAGAAAACTTAAGACTTTAAACTGAAGTTCAGAAGAAGACCAAATTGGTTAGAAGTTTTGTTACAAAATTTCAGACGGCAGATATTGTTAGGGAATGTAGTGTTAGGACTTCCAATTTAAAGGAAGAGCTTAAAATAAAATGACCACTATGTGGTCAAACTTCTGGTTCCTCTAGAAGCTTATGTTCCTGATTGGTTCCTTTACAAATTTAAATCTTACCTTCTATTTTGCATTGTGTGGGGGATAAACGTATGTCTAGGAGCTTATTTCGTGATGAGATCTTATGCAATCTATCTCGACATGTCATAGAATCCATATGATCTTTAATTCTTTTCTACTGTTTCTGGTTTGCTTTTGGATCAGAATCACTTTCCATAATTTGGAGACCTAATAATGCCTAGAGCATTCTAACTATCTTTAAGGAGACTATGTTTGGTCGTTTCACTTGTTCATTTGTTCTAAACCTCACATTTGCTTAATTTTGTTCAGGAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAGGTATACCTAATTACCATAAAGTGTGTAGTGGCAGGATTTTTCATTGATTTGTCTGATACTCATTTTTGTGCAGCTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAGGTAATCTATGTATAGATTTATCAGCTATTTTCTCTTCCATTTTGTCCTGTTAGTTACGTTTTCAACATTGCTGGTAATGGAGAATGGGTATTGTTTTTTTGCCTTATAGATAATGGGATACTGATTAGTGACCTTAGTCGCCCAGATTACTTGTGTCAAACTTAATAGATGAGAGAGAGATGTTTTGGGAAAACTTAATTGCTAAAGAAGTTTTTGATAGGCATATCTGCTGAATTTTAATATATCTTCTAAGATTACATTGTTTGGGCTGGTTTCTTTTGTTTAGAAGCTCTGTAGTAACTCAGAGTCTCAAATTTCCATGAAATATTTTAATCAGTGTTGCAACGAAAAATGATTGCTTAGATTCGGTCACTGACCCTGCTAACACAGGATGATTTGTGCACTGTGCTTCCCTTTAAGAAAAAAAGTTGTTTACTGAAATTTGATGATAAAGAAAAACGGGGTGGCTTGTATAAAATTTTCTCACTAGAAGCTAAACATGGACGCCACCATGGCAGGTTTGATTTTTTGGAATATAATACAAGACTGTTGCCTTCTCAAAAAAATAAATAAAGTGTAAACCTTACTTGAGTAGAGAAAATAGGCAGTTCCCGACTAAGTTGCTCTTACTCTTCAATTTTGGTGCCGCACCCGTGTCGAAGTGGGGAGGGGGTCTTCGAGGCACAGCGCCCCGGGTTTGTGGTGGGGGGGAGGGGGACCTTGGGGCACCCACTTTGTTCCTTGCGTTTACTATAAATAAACAATTTTTGGATGTACTATTTACCAACATTCCCTTTTGCTGGTTTACATCTATAATACACCTTCATTACTTATTTAAAAAAAGTTTTTACTTGTGGTTCCCTGGTAAAAAAATCAAGTTCTGTTTATAATGACATGAGATGGGTTAAGCATAAATAGACCTTACTTCCAAAAGAAACTTTGTGATGTCCTTATCCTGTTCCATATTCAATGAAATATGACACTGAAATTTGTCTTTGGCTTAACTATTTATTTGTTAAATATTTTATGATCTACTATAATATGTCTTACAGGTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCTGTATGTTCTAAAACTTTGCTACTCTTTTTTTTCTTTTTATTATATATTATAAAGGTAGAGTAGATGATTCACCTCTAGGTTTTATCTTTATTACTTTCTCAAGCATTTTATTGTTATGAAAAGGTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCATCCAAAATAAGGCTCACACCCCATAA</genome_strand>
        <mrna_strand>ACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAG.................................................................................GTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAATGGCTGGCTATGCCCCTGATCAAGAGATTGAACTATATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAG.........................................................................CTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCT...........................................................................................................................GTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCATCCAAAATAAGGCTCACACCCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245920" ref_strand="+" ref_description="SGN-E245920 [cLEF-51-E7]">
      <seq>agagattgaactatatgaggaaataaaatttgaaccgattgtcttgtgtgaacccattaacaagaaatttgctttccgaacgaaccagcttgaggatggtgatatagtatgctatcagaaatccctttctcctgaaagtcgccagaagttacggtatccagatgttccttctttcctggagtatgttcaaaatcgccaggtggttcacttccgatacttagaaaagttgaaggaggatgatttctgtttagagctgtcaaagattaatacatatgatgaagttgtggaaagagtagctcagcgacttggcttggatgatccatccaaaataaggctcacaccccataattgttactctcagcaacctaaaccccagccgatcaagtacagaggtgttgacacccttggagatatgctggtccactacaatcagacatctgatattttgtactatgaagtactggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="39285" stop="42605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39585" g_stop="39603" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39604" i_stop="40533" i_length="930">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40534" g_stop="40602" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="88" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40603" i_stop="40675" i_length="73">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40676" g_stop="40786" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="199" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40787" i_stop="41838" i_length="1052">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41839" g_stop="41894" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="255" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41895" i_stop="42017" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42018" g_stop="42195" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="433" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42196" i_stop="42271" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42272" g_stop="42305" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="467" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E245920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39585" e_stop="39603"/>
          <exon e_start="40534" e_stop="40602"/>
          <exon e_start="40676" e_stop="40786"/>
          <exon e_start="41839" e_stop="41894"/>
          <exon e_start="42018" e_stop="42195"/>
          <exon e_start="42272" e_stop="42305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTGAACTATATGAGGTTTGTTCGTAGAATATCTCTGGGTATTATTGATGGTCATTCAGTGACTATCATGACTTTTTTGGAAATTAGAAGTTTTAAAGATGCGATAGATAGACATCCATGCCATTCCAGAACTTGCAGTTGCTCTGACAACTGTTCCCCTTCCAGCCTTGTTATGCTGGTCATCAGCCAATAGTATCTGGATCTTCTCCCTTTAGCACATATGCTTACACTTTTCTGGTGTCTAGGTCCAAGACTAAATAAATGGCAAAATGTCTTGGCATTTCTTCTTCGCAGAGTTGTCGAAGTGGTAGCTTTCAAGAGTTGTAATTTTTACTCTTTTTATGGTTTATAGATCAAATCCTTGGTTTAGATTCGTTTGCAGTTCATGAGAAACAGAAGATTCAATTCCTTTGTAGCTAAACAACAATAGGAATGTAAAATATATATGTGTAGACCGAGAAAACTTAAGACTTTAAACTGAAGTTCAGAAGAAGACCAAATTGGTTAGAAGTTTTGTTACAAAATTTCAGACGGCAGATATTGTTAGGGAATGTAGTGTTAGGACTTCCAATTTAAAGGAAGAGCTTAAAATAAAATGACCACTATGTGGTCAAACTTCTGGTTCCTCTAGAAGCTTATGTTCCTGATTGGTTCCTTTACAAATTTAAATCTTACCTTCTATTTTGCATTGTGTGGGGGATAAACGTATGTCTAGGAGCTTATTTCGTGATGAGATCTTATGCAATCTATCTCGACATGTCATAGAATCCATATGATCTTTAATTCTTTTCTACTGTTTCTGGTTTGCTTTTGGATCAGAATCACTTTCCATAATTTGGAGACCTAATAATGCCTAGAGCATTCTAACTATCTTTAAGGAGACTATGTTTGGTCGTTTCACTTGTTCATTTGTTCTAAACCTCACATTTGCTTAATTTTGTTCAGGAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAGGTATACCTAATTACCATAAAGTGTGTAGTGGCAGGATTTTTCATTGATTTGTCTGATACTCATTTTTGTGCAGCTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAGGTAATCTATGTATAGATTTATCAGCTATTTTCTCTTCCATTTTGTCCTGTTAGTTACGTTTTCAACATTGCTGGTAATGGAGAATGGGTATTGTTTTTTTGCCTTATAGATAATGGGATACTGATTAGTGACCTTAGTCGCCCAGATTACTTGTGTCAAACTTAATAGATGAGAGAGAGATGTTTTGGGAAAACTTAATTGCTAAAGAAGTTTTTGATAGGCATATCTGCTGAATTTTAATATATCTTCTAAGATTACATTGTTTGGGCTGGTTTCTTTTGTTTAGAAGCTCTGTAGTAACTCAGAGTCTCAAATTTCCATGAAATATTTTAATCAGTGTTGCAACGAAAAATGATTGCTTAGATTCGGTCACTGACCCTGCTAACACAGGATGATTTGTGCACTGTGCTTCCCTTTAAGAAAAAAAGTTGTTTACTGAAATTTGATGATAAAGAAAAACGGGGTGGCTTGTATAAAATTTTCTCACTAGAAGCTAAACATGGACGCCACCATGGCAGGTTTGATTTTTTGGAATATAATACAAGACTGTTGCCTTCTCAAAAAAATAAATAAAGTGTAAACCTTACTTGAGTAGAGAAAATAGGCAGTTCCCGACTAAGTTGCTCTTACTCTTCAATTTTGGTGCCGCACCCGTGTCGAAGTGGGGAGGGGGTCTTCGAGGCACAGCGCCCCGGGTTTGTGGTGGGGGGGAGGGGGACCTTGGGGCACCCACTTTGTTCCTTGCGTTTACTATAAATAAACAATTTTTGGATGTACTATTTACCAACATTCCCTTTTGCTGGTTTACATCTATAATACACCTTCATTACTTATTTAAAAAAAGTTTTTACTTGTGGTTCCCTGGTAAAAAAATCAAGTTCTGTTTATAATGACATGAGATGGGTTAAGCATAAATAGACCTTACTTCCAAAAGAAACTTTGTGATGTCCTTATCCTGTTCCATATTCAATGAAATATGACACTGAAATTTGTCTTTGGCTTAACTATTTATTTGTTAAATATTTTATGATCTACTATAATATGTCTTACAGGTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCTGTATGTTCTAAAACTTTGCTACTCTTTTTTTTCTTTTTATTATATATTATAAAGGTAGAGTAGATGATTCACCTCTAGGTTTTATCTTTATTACTTTCTCAAGCATTTTATTGTTATGAAAAGGTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCATCCAAAATAAGGCTCACACCCCATAATTGTTACTCTCAGCAACCTAAACCCCAGCCGATCAAGTACAGAGGTGTTGACACCCTTGGAGATATGCTGGTCCACTACAATCAGGTGAATTTTAACATTGACTAATAATAATGAACATTAGTTTCTGAAAGTCTTAACTATTTTAACTACTCGTTGACAGACATCTGATATTTTGTACTATGAAGTACTGGACA</genome_strand>
        <mrna_strand>AGAGATTGAACTATATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAG.........................................................................CTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCT...........................................................................................................................GTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCATCCAAAATAAGGCTCACACCCCATAATTGTTACTCTCAGCAACCTAAACCCCAGCCGATCAAGTACAGAGGTGTTGACACCCTTGGAGATATGCTGGTCCACTACAATCAG............................................................................ACATCTGATATTTTGTACTATGAAGTACTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E276378" ref_strand="+" ref_description="SGN-E276378 [cLEN-17-A4]">
      <seq>tatagtatgctatcagaaatccctttctcctgaaagtcgccagaagttacggtatccagatgttccttctttcctggagtatgttcaaaatcgccaggtggttcacttccgatacttagaaaagttgaaggaggatgatttctgtttagagctgtcaaagattaatacatatgatgaagttgtggaaagagtagctcagcgacttggcttggatgatccatccaaaataaggctcacaccccataattgttactctcagcaacctaaaccccagccgatcaagtacagaggtgttgacacccttggagatatgctggtccactacaatcagacatctgatattttgtactatgaagtactggacattcctttgccagaattgcaaggtttaaaaaccttaaaagtagcttttcatcatgctaccaaagatgaagtggtcacttacactatcagactaccaaaacaatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="40390" stop="42814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40690" g_stop="40786" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40787" i_stop="41838" i_length="1052">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41839" g_stop="41894" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="153" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41895" i_stop="42017" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42018" g_stop="42195" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="331" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42196" i_stop="42271" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42272" g_stop="42373" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="433" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42374" i_stop="42475" i_length="102">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42476" g_stop="42514" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="472" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E276378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40690" e_stop="40786"/>
          <exon e_start="41839" e_stop="41894"/>
          <exon e_start="42018" e_stop="42195"/>
          <exon e_start="42272" e_stop="42373"/>
          <exon e_start="42476" e_stop="42514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAGGTAATCTATGTATAGATTTATCAGCTATTTTCTCTTCCATTTTGTCCTGTTAGTTACGTTTTCAACATTGCTGGTAATGGAGAATGGGTATTGTTTTTTTGCCTTATAGATAATGGGATACTGATTAGTGACCTTAGTCGCCCAGATTACTTGTGTCAAACTTAATAGATGAGAGAGAGATGTTTTGGGAAAACTTAATTGCTAAAGAAGTTTTTGATAGGCATATCTGCTGAATTTTAATATATCTTCTAAGATTACATTGTTTGGGCTGGTTTCTTTTGTTTAGAAGCTCTGTAGTAACTCAGAGTCTCAAATTTCCATGAAATATTTTAATCAGTGTTGCAACGAAAAATGATTGCTTAGATTCGGTCACTGACCCTGCTAACACAGGATGATTTGTGCACTGTGCTTCCCTTTAAGAAAAAAAGTTGTTTACTGAAATTTGATGATAAAGAAAAACGGGGTGGCTTGTATAAAATTTTCTCACTAGAAGCTAAACATGGACGCCACCATGGCAGGTTTGATTTTTTGGAATATAATACAAGACTGTTGCCTTCTCAAAAAAATAAATAAAGTGTAAACCTTACTTGAGTAGAGAAAATAGGCAGTTCCCGACTAAGTTGCTCTTACTCTTCAATTTTGGTGCCGCACCCGTGTCGAAGTGGGGAGGGGGTCTTCGAGGCACAGCGCCCCGGGTTTGTGGTGGGGGGGAGGGGGACCTTGGGGCACCCACTTTGTTCCTTGCGTTTACTATAAATAAACAATTTTTGGATGTACTATTTACCAACATTCCCTTTTGCTGGTTTACATCTATAATACACCTTCATTACTTATTTAAAAAAAGTTTTTACTTGTGGTTCCCTGGTAAAAAAATCAAGTTCTGTTTATAATGACATGAGATGGGTTAAGCATAAATAGACCTTACTTCCAAAAGAAACTTTGTGATGTCCTTATCCTGTTCCATATTCAATGAAATATGACACTGAAATTTGTCTTTGGCTTAACTATTTATTTGTTAAATATTTTATGATCTACTATAATATGTCTTACAGGTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCTGTATGTTCTAAAACTTTGCTACTCTTTTTTTTCTTTTTATTATATATTATAAAGGTAGAGTAGATGATTCACCTCTAGGTTTTATCTTTATTACTTTCTCAAGCATTTTATTGTTATGAAAAGGTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCATCCAAAATAAGGCTCACACCCCATAATTGTTACTCTCAGCAACCTAAACCCCAGCCGATCAAGTACAGAGGTGTTGACACCCTTGGAGATATGCTGGTCCACTACAATCAGGTGAATTTTAACATTGACTAATAATAATGAACATTAGTTTCTGAAAGTCTTAACTATTTTAACTACTCGTTGACAGACATCTGATATTTTGTACTATGAAGTACTGGACATTCCTTTGCCAGAATTGCAAGGTTTAAAAACCTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAAGTAAGCATGCTGCTCTGATTTCCATTGATTTACGAGCACAATTTTTTACTTCTGAATTCTTGCTTTGATAATTACTTAAATTTCTCCTCCTTCGCTATGTAGGTGGTCACTTACACTATCAGACTACCAAAACAATCTACT</genome_strand>
        <mrna_strand>TATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCT...........................................................................................................................GTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCATCCAAAATAAGGCTCACACCCCATAATTGTTACTCTCAGCAACCTAAACCCCAGCCGATCAAGTACAGAGGTGTTGACACCCTTGGAGATATGCTGGTCCACTACAATCAG............................................................................ACATCTGATATTTTGTACTATGAAGTACTGGACATTCCTTTGCCAGAATTGCAAGGTTTAAAAACCTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAA......................................................................................................GTGGTCACTTACACTATCAGACTACCAAAACAATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548736" ref_strand="+" ref_description="SGN-E548736 [TUS-63-P6]">
      <seq>cttaaaagtagcttttcatcatgctaccaaagatgaagtggtcacttacactatcagactaccaaaacaatctactgttggtgatgtaattaatgatttaaagacgaaggtagagttgtcaaatccagatgcagaattaagattgctagaggtcttctaccacaaaatttataagatatttccaacaagtgagaagatagagaacataaatgaccagtactggacattgagggccgaagagattcctgaagaagagaagaatctaggcccgaatgctcgtttgattcatgtgtatcacttcagtaaagaaactgcacaaaaccaaatgcaaattcagaattttggggaacctttcctcttggttatccatgagggtgagactttagttcaagtgaaggtgcgaatacagaagaaattgcaggtcccagatgaagagtttgctaagtggaaatttgcattcctctcacttggtcgtcctgagtaccttgaggactcggatatattgttcaaccgtttccagcgaaaggatgtttatggtgcttgggagcagtatcttggcttggaacattctgacaatgcccctaaaaggattaatgcagcatatcagaatcgcccgacgtacgagaagcctgttaaaatttacaactagtaacgccgctgaaaatgaagattgtgagatggttcaaatctatgattgaccattgcatttgtccctgaagttaagaagccagttcgagtctgtacagggttttatgatttttgttactgaagcatcttgtattctgatatggatgtgaaagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="42037" stop="46316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42337" g_stop="42373" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42374" i_stop="42475" i_length="102">
            <donor d_prob="0.953" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42476" g_stop="42547" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="109" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42548" i_stop="42679" i_length="132">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42680" g_stop="42745" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="175" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42746" i_stop="42976" i_length="231">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42977" g_stop="43042" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="241" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43043" i_stop="44412" i_length="1370">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44413" g_stop="44499" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="328" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44500" i_stop="44602" i_length="103">
            <donor d_prob="0.496" d_score="1.00"/>
            <acceptor a_prob="0.483" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44603" g_stop="44719" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="445" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44938" g_stop="45012" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="520" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45101" g_stop="45187" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="607" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="45819" g_stop="46016" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="805" r_length="198" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E548736" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42337" e_stop="42373"/>
          <exon e_start="42476" e_stop="42547"/>
          <exon e_start="42680" e_stop="42745"/>
          <exon e_start="42977" e_stop="43042"/>
          <exon e_start="44413" e_stop="44499"/>
          <exon e_start="44603" e_stop="44719"/>
          <exon e_start="44938" e_stop="45012"/>
          <exon e_start="45101" e_stop="45187"/>
          <exon e_start="45819" e_stop="46016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAAGTAAGCATGCTGCTCTGATTTCCATTGATTTACGAGCACAATTTTTTACTTCTGAATTCTTGCTTTGATAATTACTTAAATTTCTCCTCCTTCGCTATGTAGGTGGTCACTTACACTATCAGACTACCAAAACAATCTACTGTTGGTGATGTAATTAATGATTTAAAGACGAAGGTAAAATGGTAAACTCGGTCTGATATTCCCTACTTTCAACGTGTCTGTGAACTGAAAACTTACTATTCTCCTTTATTGATGCTTCTATATTGTTAGCTTTACTTGATGCTACTCTGCTATGCTGCATAATAGGTAGAGTTGTCAAATCCAGATGCAGAATTAAGATTGCTAGAGGTCTTCTACCACAAAATTTATAAGGTATTGGTTTCAATCCCTCAACATTTGCTTCATTTTATACTTCTTAGCTAGGTCTTCTCTTTTTGTCGCCATAAATATTTGCCTCCGGAGAAGTCCTAGTCGTTATGACATAAGCTCAGAAACTCTTTAAGTCTACAAATAATAGAAATAGTTAACCAATATATTTGTTTGTAGACATTGTCTCTATCTCCATTATATTTACCTCTTGTTTTAATGATTGCTTTCATGCAGATATTTCCAACAAGTGAGAAGATAGAGAACATAAATGACCAGTACTGGACATTGAGGGCCGAAGAGGTTCTCTCTTACACACGCTTTTCTAATTCTACACTTCTGTCCCTACTATATCTGCATGTGGCCTTTATACAGTGGCCATTGTGGTGGGTAAGGTAGTGAGTTTTCCTATAGTCAAAAGCTTGAACACAAATTGGTAGTTTTCCTGTGGTCAAGAACTTGAACAAATATTTGTAGTGTTCCTGTGGTCAAAAGCTTTTATCCTTCTCTTCCTCACCCCCTTCTCTCAAACTAATTACCACATATAGATGCAGCTGACTTTGACTTACAAGTTGGTCATAAAAATGACTGAAATCATGTAGGGCCTTTACAAGCTACTGCTGTCATTGATAGTCTTATGATATAGATCTATGAATCTAAAGAATAGTGGTGTGTAAAACCAGACCAGTGTAGTCAAAGGCACGTTTAAGCCCTGAAGCGAGGCTCAAAACGTATTGAGCTCTTTGCCTCGTTTTATGTGCGCTTCGGTGTTGTCATCGAGGTTCTAAAACAAACGTTTTCTTCCCGATGATCCTCTGCTAAATAAGTGAAACTAAACAATTGATATTTCACTTTATCATAATTGTTTTTCATTTCTTTGGTCATAAACATATAAATTTGTATTTTTTTTCTTCCTTTGAGCCCTTTTTCATTAAAGCCCGGGCTTTGTGCTTAAAGTCCCCACGGACCTTAGAGCTTTTTTGTGCTTTTCGCCTTCGATAACACTAAAGCAGACGAGAATAAGGTTTTAGTTTTTTTGATATCATCTGAATTTGTGCTGTAAAGAAAGAAAATGGACCTTGAGTTAATCCCCCAAAATAGACATTTGGTGACCGAGGCAAATGTAAGGCTAAATTTGGGGCACATGATCCTGTTTTCTCACTGTAAAACTAGGTATTTTATGTATATATTTCATAAAATTGGTATAATGTTCTCTTTTACTACTATTGCTACAAGAAAACTAAATTGTGCACTTGGTTGAATGTTGTTACCTAGAGCTAGAGGTCTAGGTATCAATTCCCTCTTAATACATTTTCTTCTTCCTTTTTTAAGTGGTAAACCCGTGTTCTACGAATCCTAGATTTGTCACTGATTATTGAGGATTATCCAAAGACTATTTAAGGAGACAACATTCCATTCCTTCAATCAAAGTGCGACACTTAACATCCCAACACTTCTAGGGTACATGTGGAGTGTGGACAATATGGCATAGAAGTCCAATAATAGCGAATGCTAAATGTCAGGTGTTGAATATTATTGGCATGTTACTCCTTAATAACTTCCTTGACGATAAATATGAAGCGGCAACTCAATTACCTGTCTAGGGCCAAAAACACTATTTGACACTGTTAAATTTCAGTTTATTAATCTGAATCTTCTCTTCGTCCCTGCAGATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATGGTAAGATTCTCTTCCCCCGTATCCTGACCCACAGGGAAAAGGTGAACGAGAGAAAGGAATTTTGTCTCATGCAGCTTTGTTTACTTCTTGACATTTGAAACAGCAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAGGTACTTTGCAACTTGACATTGCTTCATCTTCCTATGAATGGCTATTATACTCGAACCAATTTACTATAATCGCTTCCTATTTTTACTCGTTTATTGGTTAGTACTTGGTTTCCTTTATCTTATTTTGTTTGTTTGGGGGAGGGGAATCGGGAATGGTTTGGATTAGTATGTATGTAGTTGATGCTTGGTTTCTTATTTTCATTTTATACAACTTTCAGTGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAGGTACTAAACACCAACTCCCTCCACCGCTAAAATTCTCACTAAATGAATCTGTAATTTTGCATCTTTGGATCTTTTTGTTAACATGCAGCGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAGGTAATCTGAATGTTCGGTTCTTACTCGTGGGCATACTCTGTAATTGGTAAAGAAGAAAAAAATTAACTGCTTTAATACATAAAGTTAGTTCCAGAGAGAGATTTGACTCGTGGAGTGGACTCTTGAGGTTTCTCTATCATGACTTTGGTGGGTTACGAGACCAGGAGTTCTCCTTCTGTGCAGCCTATGTTCCATAGTTATCATTACTCATCTAGCACTTCAGAGAATTTCCATCTGTTGAGGATGAAGACAAACTTCTAATGACTTTTTAAGATTTATTTGATTTTCTGTTGAATACCTCTGCTTCTATCGGCGCTTCGCCTGGGAGCATAACCTAGTTACATTAGTAGAATCTCTGGAAGGAATTGGAGAGATCAGATTTCTAGTATAGAATGCAAAGCTGGCTTAACAACCGTATAAAATGTTGATTTTCCGATTGAATGCATGTACAAATTGCAATGATTTACTTCAATGTGCTCCTGCTCTACCGTTTCTTTGTTTCTCCATGAGATGAACTTTGGTTACTGTGAATGTCTCTAGCTGTACCTGTCCTTACTCTACTGTATTCAAATAAATGGGAGTGGACCTCCTCATTTCGTAATAATACCTACTCTTTTCTTCCATGTTGCAGAATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGAT</genome_strand>
        <mrna_strand>CTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAA......................................................................................................GTGGTCACTTACACTATCAGACTACCAAAACAATCTACTGTTGGTGATGTAATTAATGATTTAAAGACGAAG....................................................................................................................................GTAGAGTTGTCAAATCCAGATGCAGAATTAAGATTGCTAGAGGTCTTCTACCACAAAATTTATAAG.......................................................................................................................................................................................................................................ATATTTCCAACAAGTGAGAAGATAGAGAACATAAATGACCAGTACTGGACATTGAGGGCCGAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATG.......................................................................................................CAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAG..........................................................................................................................................................................................................................TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG........................................................................................CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAAGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301014" ref_strand="+" ref_description="SGN-E301014 [cLEW-22-I7]">
      <seq>ttaaaagtagcttttcatcatgctaccaaagatgaagtggtcacttacactatcagactaccaaaacaatctactgttggtgatgtaattaatgatttaaagacgaaggtagagttgtcaaatccagatgcagaattaagattgctagaggtcttctaccacaaaatttataagatatttccaacaagtgagaagatagagaacataaatgaccagtactggacattgagggccgaagagattcctgaagaagagaagaatctaagcccgaatgctcgtttgattcatgtgtatcacttcagtaaagaaactgcacaaaaccaaatgcaaattcagaattttggggaacctttcctcttggttatccatgagggtgagactttagttcaagtgaaggtgcgaatacagaagaaattgcaggtcccagatgaagagtttgctaagtggaaatttgcattcctctcacttggtcgtcctgagtaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="42038" stop="45280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42338" g_stop="42373" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42374" i_stop="42475" i_length="102">
            <donor d_prob="0.953" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42476" g_stop="42547" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="108" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42548" i_stop="42679" i_length="132">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42680" g_stop="42745" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="174" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42746" i_stop="42976" i_length="231">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42977" g_stop="43042" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="240" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43043" i_stop="44412" i_length="1370">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44413" g_stop="44499" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="327" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44500" i_stop="44602" i_length="103">
            <donor d_prob="0.496" d_score="1.00"/>
            <acceptor a_prob="0.483" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44603" g_stop="44719" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="444" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44938" g_stop="44980" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="487" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E301014" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42338" e_stop="42373"/>
          <exon e_start="42476" e_stop="42547"/>
          <exon e_start="42680" e_stop="42745"/>
          <exon e_start="42977" e_stop="43042"/>
          <exon e_start="44413" e_stop="44499"/>
          <exon e_start="44603" e_stop="44719"/>
          <exon e_start="44938" e_stop="44980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAAGTAAGCATGCTGCTCTGATTTCCATTGATTTACGAGCACAATTTTTTACTTCTGAATTCTTGCTTTGATAATTACTTAAATTTCTCCTCCTTCGCTATGTAGGTGGTCACTTACACTATCAGACTACCAAAACAATCTACTGTTGGTGATGTAATTAATGATTTAAAGACGAAGGTAAAATGGTAAACTCGGTCTGATATTCCCTACTTTCAACGTGTCTGTGAACTGAAAACTTACTATTCTCCTTTATTGATGCTTCTATATTGTTAGCTTTACTTGATGCTACTCTGCTATGCTGCATAATAGGTAGAGTTGTCAAATCCAGATGCAGAATTAAGATTGCTAGAGGTCTTCTACCACAAAATTTATAAGGTATTGGTTTCAATCCCTCAACATTTGCTTCATTTTATACTTCTTAGCTAGGTCTTCTCTTTTTGTCGCCATAAATATTTGCCTCCGGAGAAGTCCTAGTCGTTATGACATAAGCTCAGAAACTCTTTAAGTCTACAAATAATAGAAATAGTTAACCAATATATTTGTTTGTAGACATTGTCTCTATCTCCATTATATTTACCTCTTGTTTTAATGATTGCTTTCATGCAGATATTTCCAACAAGTGAGAAGATAGAGAACATAAATGACCAGTACTGGACATTGAGGGCCGAAGAGGTTCTCTCTTACACACGCTTTTCTAATTCTACACTTCTGTCCCTACTATATCTGCATGTGGCCTTTATACAGTGGCCATTGTGGTGGGTAAGGTAGTGAGTTTTCCTATAGTCAAAAGCTTGAACACAAATTGGTAGTTTTCCTGTGGTCAAGAACTTGAACAAATATTTGTAGTGTTCCTGTGGTCAAAAGCTTTTATCCTTCTCTTCCTCACCCCCTTCTCTCAAACTAATTACCACATATAGATGCAGCTGACTTTGACTTACAAGTTGGTCATAAAAATGACTGAAATCATGTAGGGCCTTTACAAGCTACTGCTGTCATTGATAGTCTTATGATATAGATCTATGAATCTAAAGAATAGTGGTGTGTAAAACCAGACCAGTGTAGTCAAAGGCACGTTTAAGCCCTGAAGCGAGGCTCAAAACGTATTGAGCTCTTTGCCTCGTTTTATGTGCGCTTCGGTGTTGTCATCGAGGTTCTAAAACAAACGTTTTCTTCCCGATGATCCTCTGCTAAATAAGTGAAACTAAACAATTGATATTTCACTTTATCATAATTGTTTTTCATTTCTTTGGTCATAAACATATAAATTTGTATTTTTTTTCTTCCTTTGAGCCCTTTTTCATTAAAGCCCGGGCTTTGTGCTTAAAGTCCCCACGGACCTTAGAGCTTTTTTGTGCTTTTCGCCTTCGATAACACTAAAGCAGACGAGAATAAGGTTTTAGTTTTTTTGATATCATCTGAATTTGTGCTGTAAAGAAAGAAAATGGACCTTGAGTTAATCCCCCAAAATAGACATTTGGTGACCGAGGCAAATGTAAGGCTAAATTTGGGGCACATGATCCTGTTTTCTCACTGTAAAACTAGGTATTTTATGTATATATTTCATAAAATTGGTATAATGTTCTCTTTTACTACTATTGCTACAAGAAAACTAAATTGTGCACTTGGTTGAATGTTGTTACCTAGAGCTAGAGGTCTAGGTATCAATTCCCTCTTAATACATTTTCTTCTTCCTTTTTTAAGTGGTAAACCCGTGTTCTACGAATCCTAGATTTGTCACTGATTATTGAGGATTATCCAAAGACTATTTAAGGAGACAACATTCCATTCCTTCAATCAAAGTGCGACACTTAACATCCCAACACTTCTAGGGTACATGTGGAGTGTGGACAATATGGCATAGAAGTCCAATAATAGCGAATGCTAAATGTCAGGTGTTGAATATTATTGGCATGTTACTCCTTAATAACTTCCTTGACGATAAATATGAAGCGGCAACTCAATTACCTGTCTAGGGCCAAAAACACTATTTGACACTGTTAAATTTCAGTTTATTAATCTGAATCTTCTCTTCGTCCCTGCAGATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATGGTAAGATTCTCTTCCCCCGTATCCTGACCCACAGGGAAAAGGTGAACGAGAGAAAGGAATTTTGTCTCATGCAGCTTTGTTTACTTCTTGACATTTGAAACAGCAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAGGTACTTTGCAACTTGACATTGCTTCATCTTCCTATGAATGGCTATTATACTCGAACCAATTTACTATAATCGCTTCCTATTTTTACTCGTTTATTGGTTAGTACTTGGTTTCCTTTATCTTATTTTGTTTGTTTGGGGGAGGGGAATCGGGAATGGTTTGGATTAGTATGTATGTAGTTGATGCTTGGTTTCTTATTTTCATTTTATACAACTTTCAGTGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTG</genome_strand>
        <mrna_strand>TTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAA......................................................................................................GTGGTCACTTACACTATCAGACTACCAAAACAATCTACTGTTGGTGATGTAATTAATGATTTAAAGACGAAG....................................................................................................................................GTAGAGTTGTCAAATCCAGATGCAGAATTAAGATTGCTAGAGGTCTTCTACCACAAAATTTATAAG.......................................................................................................................................................................................................................................ATATTTCCAACAAGTGAGAAGATAGAGAACATAAATGACCAGTACTGGACATTGAGGGCCGAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGAAGAAGAGAAGAATCTAAGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATG.......................................................................................................CAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAG..........................................................................................................................................................................................................................TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250721" ref_strand="+" ref_description="SGN-E250721 [cLEG-7-K12]">
      <seq>aggtcttctaccacaaaatttataagatatttccaacaagtgagaagatagagaacgtaaatgaccagtactggacattgagggccgaagagattcctgaagaagagaagaatctaggcccgaatgctcgtttgattcatgtgtatcacttcagtaaagaaactgcacaaaaccaaatgcaaattcagaattttggggaacctttcctcttggttatccatgagggtgagactttagttcaagtgaaggtgcgaatacagaagaaattgcaggtcccagatgaagagtttgctaagtggaaatttgcattcctctcacttggtcgtcctgagtaccttgaggactcggatatattgttcaaccgtttccagcgaaaggatgtttatggtgcttgggagcagtatcttggcttggaacattctgacaatgcccctaaaaggattaatgcagcatatcagaatcgcccgacgtacgagaagcctgttaaaatttacaactagtaacgccgctgaaaatgaagattgtgagatggttcaaatctatgattgaccattgcatttgtccctgaaagtaagaagccagttcgagtctgtacagggtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="42420" stop="46264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42720" g_stop="42745" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42746" i_stop="42976" i_length="231">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42977" g_stop="43042" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="92" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43043" i_stop="44412" i_length="1370">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44413" g_stop="44499" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="179" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44500" i_stop="44602" i_length="103">
            <donor d_prob="0.496" d_score="1.00"/>
            <acceptor a_prob="0.483" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44603" g_stop="44719" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="296" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44938" g_stop="45012" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="371" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45101" g_stop="45187" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="458" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45819" g_stop="45964" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="604" r_length="146" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E250721" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42720" e_stop="42745"/>
          <exon e_start="42977" e_stop="43042"/>
          <exon e_start="44413" e_stop="44499"/>
          <exon e_start="44603" e_stop="44719"/>
          <exon e_start="44938" e_stop="45012"/>
          <exon e_start="45101" e_stop="45187"/>
          <exon e_start="45819" e_stop="45964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCTTCTACCACAAAATTTATAAGGTATTGGTTTCAATCCCTCAACATTTGCTTCATTTTATACTTCTTAGCTAGGTCTTCTCTTTTTGTCGCCATAAATATTTGCCTCCGGAGAAGTCCTAGTCGTTATGACATAAGCTCAGAAACTCTTTAAGTCTACAAATAATAGAAATAGTTAACCAATATATTTGTTTGTAGACATTGTCTCTATCTCCATTATATTTACCTCTTGTTTTAATGATTGCTTTCATGCAGATATTTCCAACAAGTGAGAAGATAGAGAACATAAATGACCAGTACTGGACATTGAGGGCCGAAGAGGTTCTCTCTTACACACGCTTTTCTAATTCTACACTTCTGTCCCTACTATATCTGCATGTGGCCTTTATACAGTGGCCATTGTGGTGGGTAAGGTAGTGAGTTTTCCTATAGTCAAAAGCTTGAACACAAATTGGTAGTTTTCCTGTGGTCAAGAACTTGAACAAATATTTGTAGTGTTCCTGTGGTCAAAAGCTTTTATCCTTCTCTTCCTCACCCCCTTCTCTCAAACTAATTACCACATATAGATGCAGCTGACTTTGACTTACAAGTTGGTCATAAAAATGACTGAAATCATGTAGGGCCTTTACAAGCTACTGCTGTCATTGATAGTCTTATGATATAGATCTATGAATCTAAAGAATAGTGGTGTGTAAAACCAGACCAGTGTAGTCAAAGGCACGTTTAAGCCCTGAAGCGAGGCTCAAAACGTATTGAGCTCTTTGCCTCGTTTTATGTGCGCTTCGGTGTTGTCATCGAGGTTCTAAAACAAACGTTTTCTTCCCGATGATCCTCTGCTAAATAAGTGAAACTAAACAATTGATATTTCACTTTATCATAATTGTTTTTCATTTCTTTGGTCATAAACATATAAATTTGTATTTTTTTTCTTCCTTTGAGCCCTTTTTCATTAAAGCCCGGGCTTTGTGCTTAAAGTCCCCACGGACCTTAGAGCTTTTTTGTGCTTTTCGCCTTCGATAACACTAAAGCAGACGAGAATAAGGTTTTAGTTTTTTTGATATCATCTGAATTTGTGCTGTAAAGAAAGAAAATGGACCTTGAGTTAATCCCCCAAAATAGACATTTGGTGACCGAGGCAAATGTAAGGCTAAATTTGGGGCACATGATCCTGTTTTCTCACTGTAAAACTAGGTATTTTATGTATATATTTCATAAAATTGGTATAATGTTCTCTTTTACTACTATTGCTACAAGAAAACTAAATTGTGCACTTGGTTGAATGTTGTTACCTAGAGCTAGAGGTCTAGGTATCAATTCCCTCTTAATACATTTTCTTCTTCCTTTTTTAAGTGGTAAACCCGTGTTCTACGAATCCTAGATTTGTCACTGATTATTGAGGATTATCCAAAGACTATTTAAGGAGACAACATTCCATTCCTTCAATCAAAGTGCGACACTTAACATCCCAACACTTCTAGGGTACATGTGGAGTGTGGACAATATGGCATAGAAGTCCAATAATAGCGAATGCTAAATGTCAGGTGTTGAATATTATTGGCATGTTACTCCTTAATAACTTCCTTGACGATAAATATGAAGCGGCAACTCAATTACCTGTCTAGGGCCAAAAACACTATTTGACACTGTTAAATTTCAGTTTATTAATCTGAATCTTCTCTTCGTCCCTGCAGATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATGGTAAGATTCTCTTCCCCCGTATCCTGACCCACAGGGAAAAGGTGAACGAGAGAAAGGAATTTTGTCTCATGCAGCTTTGTTTACTTCTTGACATTTGAAACAGCAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAGGTACTTTGCAACTTGACATTGCTTCATCTTCCTATGAATGGCTATTATACTCGAACCAATTTACTATAATCGCTTCCTATTTTTACTCGTTTATTGGTTAGTACTTGGTTTCCTTTATCTTATTTTGTTTGTTTGGGGGAGGGGAATCGGGAATGGTTTGGATTAGTATGTATGTAGTTGATGCTTGGTTTCTTATTTTCATTTTATACAACTTTCAGTGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAGGTACTAAACACCAACTCCCTCCACCGCTAAAATTCTCACTAAATGAATCTGTAATTTTGCATCTTTGGATCTTTTTGTTAACATGCAGCGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAGGTAATCTGAATGTTCGGTTCTTACTCGTGGGCATACTCTGTAATTGGTAAAGAAGAAAAAAATTAACTGCTTTAATACATAAAGTTAGTTCCAGAGAGAGATTTGACTCGTGGAGTGGACTCTTGAGGTTTCTCTATCATGACTTTGGTGGGTTACGAGACCAGGAGTTCTCCTTCTGTGCAGCCTATGTTCCATAGTTATCATTACTCATCTAGCACTTCAGAGAATTTCCATCTGTTGAGGATGAAGACAAACTTCTAATGACTTTTTAAGATTTATTTGATTTTCTGTTGAATACCTCTGCTTCTATCGGCGCTTCGCCTGGGAGCATAACCTAGTTACATTAGTAGAATCTCTGGAAGGAATTGGAGAGATCAGATTTCTAGTATAGAATGCAAAGCTGGCTTAACAACCGTATAAAATGTTGATTTTCCGATTGAATGCATGTACAAATTGCAATGATTTACTTCAATGTGCTCCTGCTCTACCGTTTCTTTGTTTCTCCATGAGATGAACTTTGGTTACTGTGAATGTCTCTAGCTGTACCTGTCCTTACTCTACTGTATTCAAATAAATGGGAGTGGACCTCCTCATTTCGTAATAATACCTACTCTTTTCTTCCATGTTGCAGAATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTA</genome_strand>
        <mrna_strand>AGGTCTTCTACCACAAAATTTATAAG.......................................................................................................................................................................................................................................ATATTTCCAACAAGTGAGAAGATAGAGAACGTAAATGACCAGTACTGGACATTGAGGGCCGAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATG.......................................................................................................CAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAG..........................................................................................................................................................................................................................TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG........................................................................................CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAAGTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259750" ref_strand="+" ref_description="SGN-E259750 [cLEG-42-H14]">
      <seq>ggccgaagagattcctgaagaagagaagaatctaggcccgaatgctcgtttgattcatgtgtatcacttcagtaaagaaactgcacaaaaccaaatgcaaattcagaattttggggaacctttcctcttggttatccatgagggtgagactttagttcaagtgaaggtgcgaatacagaagaaattgcaggtcccagatgaagagtttgctaagtggaaatttgcattcctctcacttggtcgtcctgagtaccttgaggactcggatatattgttcaaccgtttccagcgaaaggatgtttatggtgcttgggagcagtatcttggcttggaacattctgacaatgcccctaaaaggattaatgcagcatatcagaatcgcccgacgtacgagaagcctgttaaaatttacaactagtaacgccgctgaaaatgaagattgtgagatggttcaaatctatgattgaccattgcatttgtccctgaagttaagaagccagttcgagtctgtacagggttttatgatttttgttactgaagcatcttgtattctgatatggatgtgaagtttgatcctaatgcagcatccatatctcagtacttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="44111" stop="46350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44413" g_stop="44499" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="97" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44500" i_stop="44602" i_length="103">
            <donor d_prob="0.496" d_score="1.00"/>
            <acceptor a_prob="0.483" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44603" g_stop="44719" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="214" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44938" g_stop="45012" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="289" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45101" g_stop="45187" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45819" g_stop="46050" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="608" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E259750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44413" e_stop="44499"/>
          <exon e_start="44603" e_stop="44719"/>
          <exon e_start="44938" e_stop="45012"/>
          <exon e_start="45101" e_stop="45187"/>
          <exon e_start="45819" e_stop="46050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATGGTAAGATTCTCTTCCCCCGTATCCTGACCCACAGGGAAAAGGTGAACGAGAGAAAGGAATTTTGTCTCATGCAGCTTTGTTTACTTCTTGACATTTGAAACAGCAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAGGTACTTTGCAACTTGACATTGCTTCATCTTCCTATGAATGGCTATTATACTCGAACCAATTTACTATAATCGCTTCCTATTTTTACTCGTTTATTGGTTAGTACTTGGTTTCCTTTATCTTATTTTGTTTGTTTGGGGGAGGGGAATCGGGAATGGTTTGGATTAGTATGTATGTAGTTGATGCTTGGTTTCTTATTTTCATTTTATACAACTTTCAGTGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAGGTACTAAACACCAACTCCCTCCACCGCTAAAATTCTCACTAAATGAATCTGTAATTTTGCATCTTTGGATCTTTTTGTTAACATGCAGCGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAGGTAATCTGAATGTTCGGTTCTTACTCGTGGGCATACTCTGTAATTGGTAAAGAAGAAAAAAATTAACTGCTTTAATACATAAAGTTAGTTCCAGAGAGAGATTTGACTCGTGGAGTGGACTCTTGAGGTTTCTCTATCATGACTTTGGTGGGTTACGAGACCAGGAGTTCTCCTTCTGTGCAGCCTATGTTCCATAGTTATCATTACTCATCTAGCACTTCAGAGAATTTCCATCTGTTGAGGATGAAGACAAACTTCTAATGACTTTTTAAGATTTATTTGATTTTCTGTTGAATACCTCTGCTTCTATCGGCGCTTCGCCTGGGAGCATAACCTAGTTACATTAGTAGAATCTCTGGAAGGAATTGGAGAGATCAGATTTCTAGTATAGAATGCAAAGCTGGCTTAACAACCGTATAAAATGTTGATTTTCCGATTGAATGCATGTACAAATTGCAATGATTTACTTCAATGTGCTCCTGCTCTACCGTTTCTTTGTTTCTCCATGAGATGAACTTTGGTTACTGTGAATGTCTCTAGCTGTACCTGTCCTTACTCTACTGTATTCAAATAAATGGGAGTGGACCTCCTCATTTCGTAATAATACCTACTCTTTTCTTCCATGTTGCAGAATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACT</genome_strand>
        <mrna_strand>ATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATG.......................................................................................................CAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAG..........................................................................................................................................................................................................................TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG........................................................................................CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235501" ref_strand="+" ref_description="SGN-E235501 [cLED-11-M12]">
      <seq>agaatctaggcccgaatgctcgtttgattcatgtgtatcacttcagtaaagaaactgcacaaaaccaaatgcaaattcagaattttggggaacctttcctcttggttatccatgagggtgagactttagttcaagtgaaggtgcgaatacagaagaaattgcaggtcccagatgaagagtttgctaagtggaaatttgcattcctctcacttggtcgtcctgagtaccttgaggactcggatatattgttcaaccgtttccagcgaaaggatgtttatggtgcttgggagcagtatcttggcttggaacattctgacaatgcccctaaaaggattaatgcagcatatcagaatcgcccgacgtacgagaagcctgttaaaatttacaactagtaacgccgctgaaaatgaagattgtgagatggttcaaatctatgattgaccattgcatttgtccctgaagttaagaagccagttcgagtctgtacagggttttatgatttttgttactgaagcatcttgtattctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="44129" stop="46296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44429" g_stop="44499" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44500" i_stop="44602" i_length="103">
            <donor d_prob="0.496" d_score="1.00"/>
            <acceptor a_prob="0.483" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44603" g_stop="44719" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="188" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44938" g_stop="45012" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="263" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45101" g_stop="45187" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="350" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45819" g_stop="45996" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="528" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E235501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44429" e_stop="44499"/>
          <exon e_start="44603" e_stop="44719"/>
          <exon e_start="44938" e_stop="45012"/>
          <exon e_start="45101" e_stop="45187"/>
          <exon e_start="45819" e_stop="45996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATGGTAAGATTCTCTTCCCCCGTATCCTGACCCACAGGGAAAAGGTGAACGAGAGAAAGGAATTTTGTCTCATGCAGCTTTGTTTACTTCTTGACATTTGAAACAGCAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAGGTACTTTGCAACTTGACATTGCTTCATCTTCCTATGAATGGCTATTATACTCGAACCAATTTACTATAATCGCTTCCTATTTTTACTCGTTTATTGGTTAGTACTTGGTTTCCTTTATCTTATTTTGTTTGTTTGGGGGAGGGGAATCGGGAATGGTTTGGATTAGTATGTATGTAGTTGATGCTTGGTTTCTTATTTTCATTTTATACAACTTTCAGTGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAGGTACTAAACACCAACTCCCTCCACCGCTAAAATTCTCACTAAATGAATCTGTAATTTTGCATCTTTGGATCTTTTTGTTAACATGCAGCGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAGGTAATCTGAATGTTCGGTTCTTACTCGTGGGCATACTCTGTAATTGGTAAAGAAGAAAAAAATTAACTGCTTTAATACATAAAGTTAGTTCCAGAGAGAGATTTGACTCGTGGAGTGGACTCTTGAGGTTTCTCTATCATGACTTTGGTGGGTTACGAGACCAGGAGTTCTCCTTCTGTGCAGCCTATGTTCCATAGTTATCATTACTCATCTAGCACTTCAGAGAATTTCCATCTGTTGAGGATGAAGACAAACTTCTAATGACTTTTTAAGATTTATTTGATTTTCTGTTGAATACCTCTGCTTCTATCGGCGCTTCGCCTGGGAGCATAACCTAGTTACATTAGTAGAATCTCTGGAAGGAATTGGAGAGATCAGATTTCTAGTATAGAATGCAAAGCTGGCTTAACAACCGTATAAAATGTTGATTTTCCGATTGAATGCATGTACAAATTGCAATGATTTACTTCAATGTGCTCCTGCTCTACCGTTTCTTTGTTTCTCCATGAGATGAACTTTGGTTACTGTGAATGTCTCTAGCTGTACCTGTCCTTACTCTACTGTATTCAAATAAATGGGAGTGGACCTCCTCATTTCGTAATAATACCTACTCTTTTCTTCCATGTTGCAGAATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTG</genome_strand>
        <mrna_strand>AGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATG.......................................................................................................CAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAG..........................................................................................................................................................................................................................TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG........................................................................................CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244721" ref_strand="+" ref_description="SGN-E244721 [cLED-38-B9]">
      <seq>agaatctaggcccgaatgctcgtttgattcatgtgtatcacttcagtaaagaaactgcacaaaaccaaatgcaaattcagaattttggggaacctttcctcttggttatccatgagggtgagactttagttcaagtgaaggtgcgaatacagaagaaattgcaggtcccagatgaagagtttgctaagtggaaatttgcattcctctcacttggtcgtcctgagtaccttgaggactcggatatattgttcaaccgtttccagcgaaaggatgtttatggtgcttgggagcagtatcttggcttggaacattctgacaatgcccctaaaaggattaatgcagcatatcagaatcgcccgacgtacgagaagcctgttaaaatttacaactagtaacgccgctgaaaatgaagattgtgagatggttcaaatctatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="44129" stop="46208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44429" g_stop="44499" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44500" i_stop="44602" i_length="103">
            <donor d_prob="0.496" d_score="1.00"/>
            <acceptor a_prob="0.483" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44603" g_stop="44719" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="188" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44938" g_stop="45012" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="263" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45101" g_stop="45187" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="350" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45819" g_stop="45908" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="440" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E244721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44429" e_stop="44499"/>
          <exon e_start="44603" e_stop="44719"/>
          <exon e_start="44938" e_stop="45012"/>
          <exon e_start="45101" e_stop="45187"/>
          <exon e_start="45819" e_stop="45908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATGGTAAGATTCTCTTCCCCCGTATCCTGACCCACAGGGAAAAGGTGAACGAGAGAAAGGAATTTTGTCTCATGCAGCTTTGTTTACTTCTTGACATTTGAAACAGCAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAGGTACTTTGCAACTTGACATTGCTTCATCTTCCTATGAATGGCTATTATACTCGAACCAATTTACTATAATCGCTTCCTATTTTTACTCGTTTATTGGTTAGTACTTGGTTTCCTTTATCTTATTTTGTTTGTTTGGGGGAGGGGAATCGGGAATGGTTTGGATTAGTATGTATGTAGTTGATGCTTGGTTTCTTATTTTCATTTTATACAACTTTCAGTGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAGGTACTAAACACCAACTCCCTCCACCGCTAAAATTCTCACTAAATGAATCTGTAATTTTGCATCTTTGGATCTTTTTGTTAACATGCAGCGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAGGTAATCTGAATGTTCGGTTCTTACTCGTGGGCATACTCTGTAATTGGTAAAGAAGAAAAAAATTAACTGCTTTAATACATAAAGTTAGTTCCAGAGAGAGATTTGACTCGTGGAGTGGACTCTTGAGGTTTCTCTATCATGACTTTGGTGGGTTACGAGACCAGGAGTTCTCCTTCTGTGCAGCCTATGTTCCATAGTTATCATTACTCATCTAGCACTTCAGAGAATTTCCATCTGTTGAGGATGAAGACAAACTTCTAATGACTTTTTAAGATTTATTTGATTTTCTGTTGAATACCTCTGCTTCTATCGGCGCTTCGCCTGGGAGCATAACCTAGTTACATTAGTAGAATCTCTGGAAGGAATTGGAGAGATCAGATTTCTAGTATAGAATGCAAAGCTGGCTTAACAACCGTATAAAATGTTGATTTTCCGATTGAATGCATGTACAAATTGCAATGATTTACTTCAATGTGCTCCTGCTCTACCGTTTCTTTGTTTCTCCATGAGATGAACTTTGGTTACTGTGAATGTCTCTAGCTGTACCTGTCCTTACTCTACTGTATTCAAATAAATGGGAGTGGACCTCCTCATTTCGTAATAATACCTACTCTTTTCTTCCATGTTGCAGAATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTG</genome_strand>
        <mrna_strand>AGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATG.......................................................................................................CAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAG..........................................................................................................................................................................................................................TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG........................................................................................CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339864" ref_strand="+" ref_description="SGN-E339864 [cTOF-3-A18]">
      <seq>agaattttggggaacctttcctcttggttatccatgagggtgagactttagttcaagtgaaggtgcgaatacagaagaaattgcaggtcccagatgaagagtttgctaagtggaaatttgcattcctctcacttggtcgtcctgagtaccttgaggactcggatatattgttcaaccgtttccagcgaaaggatgtttatggtgcttgggagcagtatcttggcttggaacattctgacaatgcccctaaaaggattaatgcagcatatcagaatcgcccgacgtacgagaagcctgttaaaatttacaactagtaacgccgctgaaaatgaagattgtgagatggttcaaatctatgattgaccattgcatttgtccctgaagttaagaagccagttcgagtctgtacagggttttatgatttttgttactgaagcatcttgtattctgatatggatgtgaagtttgatcctaatgcagcatccatatctcagtacttgaactcaagtgatgcgtaaatggcccatcgataactctctctctgttctagtgtaagttaagcgagccatacattggcaaagaattttgaacaaatgaatgaatacataatatattgtgcttgattcagttctgacttttatctgaggagaagagtactactcagttttctgccattttttgggctctatagatgtgattatttctggtagagatttttgaggtttttccctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="44310" stop="46579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44610" g_stop="44719" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44938" g_stop="45012" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="185" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45101" g_stop="45187" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="272" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45819" g_stop="46279" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="734" r_length="462" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E339864" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44610" e_stop="44719"/>
          <exon e_start="44938" e_stop="45012"/>
          <exon e_start="45101" e_stop="45187"/>
          <exon e_start="45819" e_stop="46279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAGGTACTTTGCAACTTGACATTGCTTCATCTTCCTATGAATGGCTATTATACTCGAACCAATTTACTATAATCGCTTCCTATTTTTACTCGTTTATTGGTTAGTACTTGGTTTCCTTTATCTTATTTTGTTTGTTTGGGGGAGGGGAATCGGGAATGGTTTGGATTAGTATGTATGTAGTTGATGCTTGGTTTCTTATTTTCATTTTATACAACTTTCAGTGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAGGTACTAAACACCAACTCCCTCCACCGCTAAAATTCTCACTAAATGAATCTGTAATTTTGCATCTTTGGATCTTTTTGTTAACATGCAGCGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAGGTAATCTGAATGTTCGGTTCTTACTCGTGGGCATACTCTGTAATTGGTAAAGAAGAAAAAAATTAACTGCTTTAATACATAAAGTTAGTTCCAGAGAGAGATTTGACTCGTGGAGTGGACTCTTGAGGTTTCTCTATCATGACTTTGGTGGGTTACGAGACCAGGAGTTCTCCTTCTGTGCAGCCTATGTTCCATAGTTATCATTACTCATCTAGCACTTCAGAGAATTTCCATCTGTTGAGGATGAAGACAAACTTCTAATGACTTTTTAAGATTTATTTGATTTTCTGTTGAATACCTCTGCTTCTATCGGCGCTTCGCCTGGGAGCATAACCTAGTTACATTAGTAGAATCTCTGGAAGGAATTGGAGAGATCAGATTTCTAGTATAGAATGCAAAGCTGGCTTAACAACCGTATAAAATGTTGATTTTCCGATTGAATGCATGTACAAATTGCAATGATTTACTTCAATGTGCTCCTGCTCTACCGTTTCTTTGTTTCTCCATGAGATGAACTTTGGTTACTGTGAATGTCTCTAGCTGTACCTGTCCTTACTCTACTGTATTCAAATAAATGGGAGTGGACCTCCTCATTTCGTAATAATACCTACTCTTTTCTTCCATGTTGCAGAATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGA-TTTTGAGGTTTTTCCCTCTG</genome_strand>
        <mrna_strand>AGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAG..........................................................................................................................................................................................................................TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG........................................................................................CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTTGAGGTTTTTCCCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542572" ref_strand="+" ref_description="SGN-E542572 [TUS-63-P6](-)">
      <seq>gactttagttcaagtgaaggtgcgaatacagaagaaattgcaggtcccagatgaagagtctgctaagtggaaatttgcattcctctcacttggtcgtcctgagtaccttgaggactcggatatattgttcaaccgtttccagcgaaaggatgtttatggtgcttgggagcagtatcttggcttggaacattctgacaatgcccctaaaaggattaatgcagcatatcagaatcgcccgacgtacgagaagcctgttaaaatttacaactagtaacgccgctgaaaatgaagattgtgagatggttcaaatctatgattgaccattgcatttgtccctgaagttaagaagccagttcgagtctgtacagggttttatgatttttgttactgaagcatcttgtattctgatatggatgtgaagtttgatcctaatgcagcatccatatctcagtacttgaactcaagtgatgcgtaaatggcccatcgataactctctctctgttctagtgtaagttaagcgagccatacattggcaaagaattttgaacaaatgaatgaatacataatatattgtgcttgattcagttctgacttttatctgaggagaagagtactactcagttttctgccattttttgggctctatagatgtgattatttctggtagagattttgaggtttttccctctgaaattgtgtaaccttaagtttggtaatttcttgctattgtaattaaccagtaattaagaatgacaaattgttgtcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="44353" stop="91439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44653" g_stop="44719" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44938" g_stop="45012" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="142" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45101" g_stop="45187" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="229" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45819" g_stop="46351" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="762" r_length="533" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46352" i_stop="47107" i_length="756">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47108" g_stop="47129" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="784" r_length="22" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E542572" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44653" e_stop="44719"/>
          <exon e_start="44938" e_stop="45012"/>
          <exon e_start="45101" e_stop="45187"/>
          <exon e_start="45819" e_stop="46351"/>
          <exon e_start="47108" e_stop="47129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAGGTACTTTGCAACTTGACATTGCTTCATCTTCCTATGAATGGCTATTATACTCGAACCAATTTACTATAATCGCTTCCTATTTTTACTCGTTTATTGGTTAGTACTTGGTTTCCTTTATCTTATTTTGTTTGTTTGGGGGAGGGGAATCGGGAATGGTTTGGATTAGTATGTATGTAGTTGATGCTTGGTTTCTTATTTTCATTTTATACAACTTTCAGTGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAGGTACTAAACACCAACTCCCTCCACCGCTAAAATTCTCACTAAATGAATCTGTAATTTTGCATCTTTGGATCTTTTTGTTAACATGCAGCGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAGGTAATCTGAATGTTCGGTTCTTACTCGTGGGCATACTCTGTAATTGGTAAAGAAGAAAAAAATTAACTGCTTTAATACATAAAGTTAGTTCCAGAGAGAGATTTGACTCGTGGAGTGGACTCTTGAGGTTTCTCTATCATGACTTTGGTGGGTTACGAGACCAGGAGTTCTCCTTCTGTGCAGCCTATGTTCCATAGTTATCATTACTCATCTAGCACTTCAGAGAATTTCCATCTGTTGAGGATGAAGACAAACTTCTAATGACTTTTTAAGATTTATTTGATTTTCTGTTGAATACCTCTGCTTCTATCGGCGCTTCGCCTGGGAGCATAACCTAGTTACATTAGTAGAATCTCTGGAAGGAATTGGAGAGATCAGATTTCTAGTATAGAATGCAAAGCTGGCTTAACAACCGTATAAAATGTTGATTTTCCGATTGAATGCATGTACAAATTGCAATGATTTACTTCAATGTGCTCCTGCTCTACCGTTTCTTTGTTTCTCCATGAGATGAACTTTGGTTACTGTGAATGTCTCTAGCTGTACCTGTCCTTACTCTACTGTATTCAAATAAATGGGAGTGGACCTCCTCATTTCGTAATAATACCTACTCTTTTCTTCCATGTTGCAGAATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTTTGTCACAAGTATCTGTTGAGTTTTTTGTTTTTGTTTGTATCTAGAGCTGTATTTGAAAGGAAACGATGGATAGATACAAGTTTTTCTCCAGTTCTAAAGTTCTCATATGGTGTATGGAACGCGACTAATTTGGATTCGTGTTGAGATGTTCAGTAAAATGCTTTTTGTCTATTAAATTGCAAAATCTCTACTTGTGAATTTTCATTAAATGTTTTCTAATTTTAATGTTCTCTCGATTAAACATAATAAACAGAGTTTTGTGAATATCTGTATATATATAAAAAAGAAATACTAAAAATTATAAGTCCTTTATGTACATTTAAATTTTGATTTTTCTTGGAAAATACAGATTAATCCAATTTCGAAACGAATATCAAACGCCTAAAAAAAAGAAAGGAAAAAAAAAAGAGAGTGAACATAAAGGAAGCTCTGAGCTCCACATATTAACTTCCAATGGCAACAATACTCTCTCGCTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCTCCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAGGTAAAAAAAAAGAACAAAAAAA</genome_strand>
        <mrna_strand>GACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTCTGCTAAG..........................................................................................................................................................................................................................TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG........................................................................................CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341588" ref_strand="+" ref_description="SGN-E341588 [cTOE-23-N14]">
      <seq>cgaatacagaagaagttgcaggtccgggatgaagagtttgctaagtggaaatttgcattcctctcacttggtcgtcctgagtaccttgaggactcggatatattgttcaaccgtttccagcgaaaggatgtttatggtgcttgggagcagtatcttggcttggaacattctgacaatgcccctaaaaggattaatgcagcatatcagaatcgcccgacgtacgagaagcctgttaaaatttacaactagtaacgccgctgaaaatgaagattgtgagatggttcaaatctatgattgaccattgcatttgtccctgaagttaagaagccagttcgagtctgtacagggttttatgatttttgttactgaagcatcttgtattctgatatggatgtgaagtttgatcctaatgcagcatccatatctcagtacttgaactcaagtgatgcgtaaatggcccatcgataactctctctctgttctagtgtaagttaagcgagccatacattggcaaagaattttgaacaaatgaatgaatacataatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="44375" stop="46461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44675" g_stop="44719" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218">
            <donor d_prob="0.993" d_score="0.93"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44938" g_stop="45012" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="120" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45101" g_stop="45187" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="207" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45819" g_stop="46161" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="550" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E341588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44675" e_stop="44719"/>
          <exon e_start="44938" e_stop="45012"/>
          <exon e_start="45101" e_stop="45187"/>
          <exon e_start="45819" e_stop="46161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAGGTACTTTGCAACTTGACATTGCTTCATCTTCCTATGAATGGCTATTATACTCGAACCAATTTACTATAATCGCTTCCTATTTTTACTCGTTTATTGGTTAGTACTTGGTTTCCTTTATCTTATTTTGTTTGTTTGGGGGAGGGGAATCGGGAATGGTTTGGATTAGTATGTATGTAGTTGATGCTTGGTTTCTTATTTTCATTTTATACAACTTTCAGTGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAGGTACTAAACACCAACTCCCTCCACCGCTAAAATTCTCACTAAATGAATCTGTAATTTTGCATCTTTGGATCTTTTTGTTAACATGCAGCGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAGGTAATCTGAATGTTCGGTTCTTACTCGTGGGCATACTCTGTAATTGGTAAAGAAGAAAAAAATTAACTGCTTTAATACATAAAGTTAGTTCCAGAGAGAGATTTGACTCGTGGAGTGGACTCTTGAGGTTTCTCTATCATGACTTTGGTGGGTTACGAGACCAGGAGTTCTCCTTCTGTGCAGCCTATGTTCCATAGTTATCATTACTCATCTAGCACTTCAGAGAATTTCCATCTGTTGAGGATGAAGACAAACTTCTAATGACTTTTTAAGATTTATTTGATTTTCTGTTGAATACCTCTGCTTCTATCGGCGCTTCGCCTGGGAGCATAACCTAGTTACATTAGTAGAATCTCTGGAAGGAATTGGAGAGATCAGATTTCTAGTATAGAATGCAAAGCTGGCTTAACAACCGTATAAAATGTTGATTTTCCGATTGAATGCATGTACAAATTGCAATGATTTACTTCAATGTGCTCCTGCTCTACCGTTTCTTTGTTTCTCCATGAGATGAACTTTGGTTACTGTGAATGTCTCTAGCTGTACCTGTCCTTACTCTACTGTATTCAAATAAATGGGAGTGGACCTCCTCATTTCGTAATAATACCTACTCTTTTCTTCCATGTTGCAGAATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATT</genome_strand>
        <mrna_strand>CGAATACAGAAGAAGTTGCAGGTCCGGGATGAAGAGTTTGCTAAG..........................................................................................................................................................................................................................TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG........................................................................................CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270201" ref_strand="-" ref_description="SGN-E270201 [cLEM-1-G8]">
      <seq>aattgcaggtcccagatgaagagtttgctaagtggaaatttgcattcctctcacttggtcgtcctgagtaccttgaggactcggatatattgttcaaccgtttccagcgaaaggatgtttatggtgcttgggagcagtatcttggcttggaacattctgacaatgcccctaaaaggattaatgcagcatatcagaatcgcccgacgtacgagaagcctgttaaaatttacaactagtaacgccgctgaaaatgaagattgtgagatggttcaaatctatgattgaccattgcatttgtccctgaagttaagaagccagttcgagtctgtacagggttttatgatttttgttactgaagcatcttgtattctgatatggatgtgaagtttnntttggggnnaattcccctncctaantgcagcatccatatctcagtacttgaactcaagtgatgcgtaaatggcccatcgataactctctctctgttctagtgtaagttaagcgagccatacattggcaaagaattttgaacaaatgaatgaatacataatatattgtgcttgattcagttctgacttttaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="44388" stop="91436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44688" g_stop="44719" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44938" g_stop="45012" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="107" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45101" g_stop="45187" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="194" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45819" g_stop="46203" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="597" r_length="403" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E270201" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270201" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44688" e_stop="44719"/>
          <exon e_start="44938" e_stop="45012"/>
          <exon e_start="45101" e_stop="45187"/>
          <exon e_start="45819" e_stop="46203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCAGGTCCCAGATGAAGAGTTTGCTAAGGTACTTTGCAACTTGACATTGCTTCATCTTCCTATGAATGGCTATTATACTCGAACCAATTTACTATAATCGCTTCCTATTTTTACTCGTTTATTGGTTAGTACTTGGTTTCCTTTATCTTATTTTGTTTGTTTGGGGGAGGGGAATCGGGAATGGTTTGGATTAGTATGTATGTAGTTGATGCTTGGTTTCTTATTTTCATTTTATACAACTTTCAGTGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAGGTACTAAACACCAACTCCCTCCACCGCTAAAATTCTCACTAAATGAATCTGTAATTTTGCATCTTTGGATCTTTTTGTTAACATGCAGCGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAGGTAATCTGAATGTTCGGTTCTTACTCGTGGGCATACTCTGTAATTGGTAAAGAAGAAAAAAATTAACTGCTTTAATACATAAAGTTAGTTCCAGAGAGAGATTTGACTCGTGGAGTGGACTCTTGAGGTTTCTCTATCATGACTTTGGTGGGTTACGAGACCAGGAGTTCTCCTTCTGTGCAGCCTATGTTCCATAGTTATCATTACTCATCTAGCACTTCAGAGAATTTCCATCTGTTGAGGATGAAGACAAACTTCTAATGACTTTTTAAGATTTATTTGATTTTCTGTTGAATACCTCTGCTTCTATCGGCGCTTCGCCTGGGAGCATAACCTAGTTACATTAGTAGAATCTCTGGAAGGAATTGGAGAGATCAGATTTCTAGTATAGAATGCAAAGCTGGCTTAACAACCGTATAAAATGTTGATTTTCCGATTGAATGCATGTACAAATTGCAATGATTTACTTCAATGTGCTCCTGCTCTACCGTTTCTTTGTTTCTCCATGAGATGAACTTTGGTTACTGTGAATGTCTCTAGCTGTACCTGTCCTTACTCTACTGTATTCAAATAAATGGGAGTGGACCTCCTCATTTCGTAATAATACCTACTCTTTTCTTCCATGTTGCAGAATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAG-----TTT---G---A------T-CCTAA-TGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTAC</genome_strand>
        <mrna_strand>AATTGCAGGTCCCAGATGAAGAGTTTGCTAAG..........................................................................................................................................................................................................................TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG........................................................................................CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTNNTTTGGGGNNAATTCCCCTNCCTAANTGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTA-AAAAAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392520" ref_strand="+" ref_description="SGN-E392520 [TUS-35-A10](-)">
      <seq>acgtacgagaagccctgttaaaatttacaactagtaacgccgctgaaaatgaagattgtgagatgctccccccccctgattgaccattgcatttgtccctgaagttaagaagccagttcgagtctgtacagggttttatgatttttgttactgaagcatcttgtattctgatatggatgtgaagtttgatcctaatgcagcatccatatctcagtacttgaactcaagtgatgcgtaaatggcccatcgataactctctctctgttctagtgtaagttaagcgagccatacattggcaaagaattttgaacaaatgaatgaatacataatatattgtgcttgattcagttctgacttttatctgaggagaagagtactactcagttttctgccattttttgggctctatagatgtgattatttctggtagagattttgaggtttttccctctgaaattgtgtaaccttaagtttggtaatttcgtgctattgtaattaaccagtaattaagaatgacaaatagttgtcacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="45528" stop="46659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45828" g_stop="46359" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E392520" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45828" e_stop="46359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTACGAGAAG-CCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTTTGTCACAA</genome_strand>
        <mrna_strand>ACGTACGAGAAGCCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGCTCCCCCCCCCTGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCGTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATAG-TTGTCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233928" ref_strand="+" ref_description="SGN-E233928 [cLEL-8-C21](-)">
      <seq>tgtgaagtttgatcctaatcagcatccatatctcagtacttgaactcaagtgatgcgtaaatggcccatcgataactctctctctgttctagtgtaagttaagcgagccatacattggcaaagaattttgaacaaatgaatgaatacataatatattgtgcttgattcagttctgacttttatctgaggagaagagtactactcagttttctgccattttttgggctctatagatgtgattatttctggtagagattttgaggtttttccctctgaaattgtgtaaccttaagtttggtaatttcttgctattgtaattaaccagtaattaagaatgacaaattgtttgtcccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="45704" stop="46659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46004" g_stop="46359" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="372"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E233928" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46004" e_stop="46359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTTTGTCACAA</genome_strand>
        <mrna_strand>TGTGAAGTTTGATCCTAAT-CAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTTTGTCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234343" ref_strand="+" ref_description="SGN-E234343 [cLEL-8-C21](-)">
      <seq>agtttgatcctaatgcagcatccatatctcagtacttgaactcaagtaatgcgtaaatggcccatcgataactctctctctgttctagtgtaagttaagcgagccatacattggcaaagaattttgaacaaatgaatgaatacataatatattgtgcttgattcagttctgacttttatctgaggagaagagtactactcagttttctgccattttttgggctctatagatgtgattatttctggtagagattttgaggtttttccctctgaaattgtgtaaccttaagtttggtaatttcttgctattgtaattaaccagtaattaagaatgacaaattgtttgtcncaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="45709" stop="46659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46009" g_stop="46359" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="368"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E234343" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46009" e_stop="46359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTTTGTCACAA</genome_strand>
        <mrna_strand>AGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTAATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTTTGTCNCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724863" ref_strand="+" ref_description="SGN-E724863 [FC25BE05]">
      <seq>gaatggcaacaatactctctcactcatcactctatcccttccattctctctcttcttcaacaacaatttgttcatccttatgcccttttacttgctgtccttcttttccaacaaagcttgaattcccagtcttgtcaacatcatgtttttcccaatttcaccaatttttccctttccccacaaatcatcatcatcccattttgctctttgttggttttgattcaccccctttggatactcaaacttttcttgccactatcagtgttttaactgccattgctctctccctctttcttggcctcaagggagatccagttccttgtgataggtgtgctgggaatggtgggacaaagtgcgtgttttgcaacgatggtaagatgaagaaagaaacaggattagtagactgcaaagtttgcaagggtgcaggattaatactctgcaagaaatgtgctggttctggatactcaaaaaggctataacatatactacttgtactcttttttcctctagctattgacttgtgttctgaggctaaatcacacatacaagctcacatatgaggctatctcattttggttaaattatatatttttcttgaaaaaagaagggttactagtacttttaatccctcgattattggtagattatatctgtctaagcacatttaacctttagtcaattgaatgttatagctcattacaatatgatgtattttgtcaaatagcatttgtcttcacacaaactttattagtaattgttttgccaattgacttnnnnnaaaaaaaaaaaaaaaaannaaaanaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="46504" stop="49849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46803" g_stop="47107" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47108" i_stop="47319" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47320" g_stop="47356" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="342" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47357" i_stop="48753" i_length="1397">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48754" g_stop="48837" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="426" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48838" i_stop="49202" i_length="365">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49203" g_stop="49549" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="773" r_length="347" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="779" polyA_stop="796"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E724863" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46803" e_stop="47107"/>
          <exon e_start="47320" e_stop="47356"/>
          <exon e_start="48754" e_stop="48837"/>
          <exon e_start="49203" e_stop="49549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCAACAATACTCTCTCGCTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCTCCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAGGTAAAAAAAAAGAACAAAAAAAATCTTATCTTGATTTTTATCATAAGGTTTCATAAAGTTCCTTTTTTTAATTGCTTTTCTCAAAGATACTTGCTTTCAGTTTATGGGTCAATTTCTTTATCTTGGGTGTCATAAAGTTCCTTTTTTTTATTGATTTATCAAGCTGTTTAAAGTTTTGTTAAATTTTAGTTTATTTGTTATTATATTTGCAGGGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATGGTGAGCCCTTTTATATATTTTGGTTTTAATTACTGTTATGTATGTATGTTTATGTGTGTGGTCTATGTGTGTGTGTGTGTGTATATATATATATATATATGTTCTTCATATAGATTGATGTAATTGAGCTAAGGAAAAACTATCTGTGCAAGTCAAGTCCAACTGTTGAATTAAGAATCTGTTATGGATTCCAAGTTGTAAGATATCTCAGTCCATAAGCAATACTAGTTAAAAAACTATTTCAGTGCTTGAAAGGTTTCATAAAATCGTGTAAGAGTTGTTATCGTGATCAAAACTAGACAAATGACAACTTATTGATATGGTAAAGCTTTACAGGATTGTTTATAAGCTATAACGTAGCCATTTGACGCTGTATCAATAACTAGTAAGATGTTTTGGATCCTGCTTTATTCGTTTATGCAGGCAACTATTTTTTCGGATTTTTGATATATAACTCTAAACAAGCGGATTGATAAATATGTTATCTTCATGATGGAGTGAGTGGAAGGGCATGTTTCGATTAGCTAGGCATGCCTGGCAAAGGCATGTTCAGGATGTGGTGTGAACTTTTAAATTTATGACGTATTTTGGATATCGATTTTGTTTTAGGATTTTATTATGTGTGCTTCATCATGAGAAATGCAACAATCCTGCAGTCAATATACAATAGATCAAAACTATAAATAATAAAAGCAAAGTCTAATACTTCCTGCAGTCTTCATTTCTTCCCTAGGCTAACAGCTTCTAGAAGGTATTAACGGAGGATTGTTTGGAGAAAGGTGCTAATGATTCTGTTAGTAATCGTTGAGAGCATACTGATGTTATATATGTTAGTTTCCGATTAGCTGCAAACCCAATGGTTTGAGATTAACCACTTCACCGGTGCACTAAGTGGATTGCTGACCCTCGCTTATGGGCTCCGGATCTCCATTTGCCCTTTGGACCATTCTGTATGGATTGAAGCAGTCCTCGAGGGCGTGGTTTGAAAGTTGAGTAAGGTCTTACTTTAGTTTGGCTACAAAAGGTGTGATTCTGGTCACACGCATTTTGTACTAAAGGGTGAGAAAGTGAGCCAGATCATAGTAAAGACCTTTGCTTCTTGTTGTTGTTTTCTTTCTTTTTTTACTTAATGCATCCCCAAAAAACCACCCCTCTTTTTTCTTGAAGAAAGGGGGCAGCGAGAGGAAAGTTTCGATATCTTTCTCATGCAGTCAATTCTGTTTTAGTTTTTAACATCACAGATGAAACTATCGAAAAGGTTTAACACAAGCAAATAAGTGTACAGCGATGTGCATATGCTCGTCTTACAGATTTCATTATGCTGTCGTTGTTCTTCCCTTTTCGTTCCTTAAGGGCAAGAAGATTCAAGTTACTAATAACTTTGTTTGGATGTGTAGGTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAGGTACTATTCAGCTGCAATTTCTTCGCGCTACCAATTTTTAGTAATCGTTCAGTTTGGAATACTTATAGCATGTCTAACAGATTTAGATGAACTCTCGAATTTGGATTTTAGATCATATGAATGACATGAAAGAACTTAGATAATCCTTTCCCATCTGTCAGGCTTGTATATACCCACGCTCCTGTTTATTATTTTCTAGAACCTCAGGAACTATGTTTCCGACTCACCCTTGGCTTTCTCCTTAGGTTTGTCAAGCCAACCTGACATGTTCAGATTGGAACACCTCGACGATGATGTAGTCAAACTAACATTTTTTCTCGAGTAGAATGCATCGAACGATCATTATAATAATTTTTTTATTGCAGGATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTCTTCACACAAACTTTACAAGTAATTGTTTTGCCAATTGACTT</genome_strand>
        <mrna_strand>GAATGGCAACAATACTCTCTCACTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCACCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAG....................................................................................................................................................................................................................GGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................GATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTCTTCACACAAACTTTATTAGTAATTGTTTTGCCAATTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708377" ref_strand="+" ref_description="SGN-E708377 [FA35CD07]">
      <seq>cctttcactcatcactctatcccttccattctctctcttcttcaacaacaatttgttcatccttatgcccttttacttgctgtccttcttttccaacaaagcttgaattcccagtcttgtcaacatcatgtttttcccaatttcaccaatttttccctttccccacaaatcatcatcatcccattttgctctttgttggttttgattcaccccctttggatactcaaacttttcttgccactatcagtgttttaactgccattgctctctccctctttcttggcctcaagggagatccagttccttgtgataggtgtgctgggaatggtgggacaaagtgcgtgttttgcaacgatggtaagatgaagaaagaaacaggattagtagactgcaaagtttgcaagggtgcaggtactattcagctgcaatttcttcgcgctaccaatttttagtaatcgttcagtttggaatacttatagcatgtctaacagatttagatgaactctcgaatttggttttagatcatatgaatgacatgaaagaacttagataatcctttcccatctgtcaggcttgtatatacccacgctcctgtttattattttctagaacctcaggaactatgttaccgactcacccttggctttctccttaggtttgtcaagccaacctgacatgttcagattggaacacctcgacgatgatgtagtcaaactaacattttttctcgagtagaatgcatcgaacgatcattataataatttttttattgcaggattaatactctgcaagaaatgtgctggttctggatactcaaaaaggctataacatatactacttgtactcttttttcctctagctattgacttgtgttctggagctaaatcacacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="46519" stop="49621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46818" g_stop="47107" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47108" i_stop="47319" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47320" g_stop="47356" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="327" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47357" i_stop="48753" i_length="1397">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48754" g_stop="49321" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="894" r_length="567" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E708377" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46818" e_stop="47107"/>
          <exon e_start="47320" e_stop="47356"/>
          <exon e_start="48754" e_stop="49321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCGCTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCTCCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAGGTAAAAAAAAAGAACAAAAAAAATCTTATCTTGATTTTTATCATAAGGTTTCATAAAGTTCCTTTTTTTAATTGCTTTTCTCAAAGATACTTGCTTTCAGTTTATGGGTCAATTTCTTTATCTTGGGTGTCATAAAGTTCCTTTTTTTTATTGATTTATCAAGCTGTTTAAAGTTTTGTTAAATTTTAGTTTATTTGTTATTATATTTGCAGGGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATGGTGAGCCCTTTTATATATTTTGGTTTTAATTACTGTTATGTATGTATGTTTATGTGTGTGGTCTATGTGTGTGTGTGTGTGTATATATATATATATATATGTTCTTCATATAGATTGATGTAATTGAGCTAAGGAAAAACTATCTGTGCAAGTCAAGTCCAACTGTTGAATTAAGAATCTGTTATGGATTCCAAGTTGTAAGATATCTCAGTCCATAAGCAATACTAGTTAAAAAACTATTTCAGTGCTTGAAAGGTTTCATAAAATCGTGTAAGAGTTGTTATCGTGATCAAAACTAGACAAATGACAACTTATTGATATGGTAAAGCTTTACAGGATTGTTTATAAGCTATAACGTAGCCATTTGACGCTGTATCAATAACTAGTAAGATGTTTTGGATCCTGCTTTATTCGTTTATGCAGGCAACTATTTTTTCGGATTTTTGATATATAACTCTAAACAAGCGGATTGATAAATATGTTATCTTCATGATGGAGTGAGTGGAAGGGCATGTTTCGATTAGCTAGGCATGCCTGGCAAAGGCATGTTCAGGATGTGGTGTGAACTTTTAAATTTATGACGTATTTTGGATATCGATTTTGTTTTAGGATTTTATTATGTGTGCTTCATCATGAGAAATGCAACAATCCTGCAGTCAATATACAATAGATCAAAACTATAAATAATAAAAGCAAAGTCTAATACTTCCTGCAGTCTTCATTTCTTCCCTAGGCTAACAGCTTCTAGAAGGTATTAACGGAGGATTGTTTGGAGAAAGGTGCTAATGATTCTGTTAGTAATCGTTGAGAGCATACTGATGTTATATATGTTAGTTTCCGATTAGCTGCAAACCCAATGGTTTGAGATTAACCACTTCACCGGTGCACTAAGTGGATTGCTGACCCTCGCTTATGGGCTCCGGATCTCCATTTGCCCTTTGGACCATTCTGTATGGATTGAAGCAGTCCTCGAGGGCGTGGTTTGAAAGTTGAGTAAGGTCTTACTTTAGTTTGGCTACAAAAGGTGTGATTCTGGTCACACGCATTTTGTACTAAAGGGTGAGAAAGTGAGCCAGATCATAGTAAAGACCTTTGCTTCTTGTTGTTGTTTTCTTTCTTTTTTTACTTAATGCATCCCCAAAAAACCACCCCTCTTTTTTCTTGAAGAAAGGGGGCAGCGAGAGGAAAGTTTCGATATCTTTCTCATGCAGTCAATTCTGTTTTAGTTTTTAACATCACAGATGAAACTATCGAAAAGGTTTAACACAAGCAAATAAGTGTACAGCGATGTGCATATGCTCGTCTTACAGATTTCATTATGCTGTCGTTGTTCTTCCCTTTTCGTTCCTTAAGGGCAAGAAGATTCAAGTTACTAATAACTTTGTTTGGATGTGTAGGTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAGGTACTATTCAGCTGCAATTTCTTCGCGCTACCAATTTTTAGTAATCGTTCAGTTTGGAATACTTATAGCATGTCTAACAGATTTAGATGAACTCTCGAATTTGGATTTTAGATCATATGAATGACATGAAAGAACTTAGATAATCCTTTCCCATCTGTCAGGCTTGTATATACCCACGCTCCTGTTTATTATTTTCTAGAACCTCAGGAACTATGTTTCCGACTCACCCTTGGCTTTCTCCTTAGGTTTGTCAAGCCAACCTGACATGTTCAGATTGGAACACCTCGACGATGATGTAGTCAAACTAACATTTTTTCTCGAGTAGAATGCATCGAACGATCATTATAATAATTTTTTTATTGCAGGATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATA</genome_strand>
        <mrna_strand>CCTTTCACTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCACCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAG....................................................................................................................................................................................................................GGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAGGTACTATTCAGCTGCAATTTCTTCGCGCTACCAATTTTTAGTAATCGTTCAGTTTGGAATACTTATAGCATGTCTAACAGATTTAGATGAACTCTCGAATTTGG-TTTTAGATCATATGAATGACATGAAAGAACTTAGATAATCCTTTCCCATCTGTCAGGCTTGTATATACCCACGCTCCTGTTTATTATTTTCTAGAACCTCAGGAACTATGTTACCGACTCACCCTTGGCTTTCTCCTTAGGTTTGTCAAGCCAACCTGACATGTTCAGATTGGAACACCTCGACGATGATGTAGTCAAACTAACATTTTTTCTCGAGTAGAATGCATCGAACGATCATTATAATAATTTTTTTATTGCAGGATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGGAGCTAAATCACACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218410" ref_strand="+" ref_description="SGN-E218410 [cLEL-18-N8](-)">
      <seq>ggtgtgctgggaatggtgggacaaagtgcgtgttttgcaacgatggtaagatgaagaaagaaacaggattagtagactgcaaagtttgcaagggtgcaggattaatactctgcaagaaatgtgctggttctggatactcaaaaaggctataacatatactacttgtactcttttttcctctagctattgacttgtgttctgaggctaaatcacacatacaagctcacatatgaggctatctcattttggttaaattatatatttttcttgaaaaaaaaagggttactagtacttttaatccctcgattattggtagattatatctgtctaagcacatttaacctttagtcaattgaatgttatagctcattcaaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="48440" stop="91439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48754" g_stop="48837" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="99" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48838" i_stop="49202" i_length="365">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49203" g_stop="49479" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="376" r_length="277" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49480" i_stop="49665" i_length="186">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49666" g_stop="49682" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="393" r_length="17" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E218410" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48754" e_stop="48837"/>
          <exon e_start="49203" e_stop="49479"/>
          <exon e_start="49666" e_stop="49682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAGGTACTATTCAGCTGCAATTTCTTCGCGCTACCAATTTTTAGTAATCGTTCAGTTTGGAATACTTATAGCATGTCTAACAGATTTAGATGAACTCTCGAATTTGGATTTTAGATCATATGAATGACATGAAAGAACTTAGATAATCCTTTCCCATCTGTCAGGCTTGTATATACCCACGCTCCTGTTTATTATTTTCTAGAACCTCAGGAACTATGTTTCCGACTCACCCTTGGCTTTCTCCTTAGGTTTGTCAAGCCAACCTGACATGTTCAGATTGGAACACCTCGACGATGATGTAGTCAAACTAACATTTTTTCTCGAGTAGAATGCATCGAACGATCATTATAATAATTTTTTTATTGCAGGATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTCTTCACACAAACTTTACAAGTAATTGTTTTGCCAATTGACTTATTTTTCTTTGATCATCATTTATTTTGTTCCAAACCTAATCCATATGTGACAAACAAATACAAACTTTGATTTTATTATATTCTTTTTGTCTTGCTTATCATCATCAAAATGGAACAAAAAACCAAAAAAAAA</genome_strand>
        <mrna_strand>GTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................GATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAAAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTCAAAT..........................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376618" ref_strand="+" ref_description="SGN-E376618 [TUS-18-A14](-)">
      <seq>gacaaagtgggtgttttgcaacgatggtaagatgaaaaaagaaacaggattagtagactgcaaagtttgcaagggtgcaggattaatactttgcaaaaaatgtgctggttttggatactcaaaaaggctataacatatactacttgtacttttttttcctctagctattgacttgtgttttgagggtaaatcacacatacaagctcacatatgaggctatttcattttggttaaattatatattttttttgaaaaaaaaagggttactagtacttttaatccctcgattattggtagattatatctgtttaagcacatttaacctttagtcaattgaatgttatagctcattacaatatgatgtattttgtcaaatagcatttgttttcacccaaactttacaagtaattgttttgccaattgactttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="48458" stop="130511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48758" g_stop="48837" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48838" i_stop="49202" i_length="365">
            <donor d_prob="0.860" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49203" g_stop="49549" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="427" r_length="347" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49550" i_stop="49653" i_length="104">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49654" g_stop="49685" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="459" r_length="32" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E376618" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48758" e_stop="48837"/>
          <exon e_start="49203" e_stop="49549"/>
          <exon e_start="49654" e_stop="49685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAGGTACTATTCAGCTGCAATTTCTTCGCGCTACCAATTTTTAGTAATCGTTCAGTTTGGAATACTTATAGCATGTCTAACAGATTTAGATGAACTCTCGAATTTGGATTTTAGATCATATGAATGACATGAAAGAACTTAGATAATCCTTTCCCATCTGTCAGGCTTGTATATACCCACGCTCCTGTTTATTATTTTCTAGAACCTCAGGAACTATGTTTCCGACTCACCCTTGGCTTTCTCCTTAGGTTTGTCAAGCCAACCTGACATGTTCAGATTGGAACACCTCGACGATGATGTAGTCAAACTAACATTTTTTCTCGAGTAGAATGCATCGAACGATCATTATAATAATTTTTTTATTGCAGGATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTCTTCACACAAACTTTACAAGTAATTGTTTTGCCAATTGACTTATTTTTCTTTGATCATCATTTATTTTGTTCCAAACCTAATCCATATGTGACAAACAAATACAAACTTTGATTTTATTATATTCTTTTTGTCTTGCTTATCATCATCAAAATGGAACAAAAAACCAAAAAAAAAAAC</genome_strand>
        <mrna_strand>GACAAAGTGGGTGTTTTGCAACGATGGTAAGATGAAAAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................GATTAATACTTTGCAAAAAATGTGCTGGTTTTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTTTTTTTTCCTCTAGCTATTGACTTGTGTTTTGAGGGTAAATCACACATACAAGCTCACATATGAGGCTATTTCATTTTGGTTAAATTATATATTTTTTTTGAAAAAAAAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTTTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTTTTCACCCAAACTTTACAAGTAATTGTTTTGCCAATTGACTT........................................................................................................TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376619" ref_strand="+" ref_description="SGN-E376619 [TUS-18-A14]">
      <seq>acaaagtgcgtgttttgcaacgatggtaagatgaagaaagaaacaggattagtagactgcaaagtttgcaagggtgcaggattaatactctgcaagaaatgtgctggttctggatactcaaaaaggctataacatatactacttgtactcttttttcctctagctattgacttgtgttctgaggctaaatcacacatacaagctcacatatgaggctatctcattttggttaaattatatatttttcttgaaaaaagaagggttactagtacttttaatccctcgattattggtagattatatctgtctaagcacatttaacctttagtcaattgaatgttatagctcattacaatatgatgtattttgtcaaatagcatttgtcttcacacaaactttacaagtaattgttttgccaattgacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="48459" stop="91439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48759" g_stop="48837" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48838" i_stop="49202" i_length="365">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49203" g_stop="49550" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="427" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49551" i_stop="49655" i_length="105">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49656" g_stop="49687" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="459" r_length="32" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E376619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48759" e_stop="48837"/>
          <exon e_start="49203" e_stop="49550"/>
          <exon e_start="49656" e_stop="49687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAGGTACTATTCAGCTGCAATTTCTTCGCGCTACCAATTTTTAGTAATCGTTCAGTTTGGAATACTTATAGCATGTCTAACAGATTTAGATGAACTCTCGAATTTGGATTTTAGATCATATGAATGACATGAAAGAACTTAGATAATCCTTTCCCATCTGTCAGGCTTGTATATACCCACGCTCCTGTTTATTATTTTCTAGAACCTCAGGAACTATGTTTCCGACTCACCCTTGGCTTTCTCCTTAGGTTTGTCAAGCCAACCTGACATGTTCAGATTGGAACACCTCGACGATGATGTAGTCAAACTAACATTTTTTCTCGAGTAGAATGCATCGAACGATCATTATAATAATTTTTTTATTGCAGGATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTCTTCACACAAACTTTACAAGTAATTGTTTTGCCAATTGACTTATTTTTCTTTGATCATCATTTATTTTGTTCCAAACCTAATCCATATGTGACAAACAAATACAAACTTTGATTTTATTATATTCTTTTTGTCTTGCTTATCATCATCAAAATGGAACAAAAAACCAAAAAAAAAAACCA</genome_strand>
        <mrna_strand>ACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................GATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTCTTCACACAAACTTTACAAGTAATTGTTTTGCCAATTGACTTA.........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389755" ref_strand="+" ref_description="SGN-E389755 [TUS-4-C8]">
      <seq>ctgtacttaatgaacttgctgaggatctgaagcaggatgttgaaatggaagataagtcatcagatattttgcataatcctatttcagaggacctaagtttgttgaggatgaagcttgaaggagcgcaggaaaagcttctaaaatctgccaataccataagtatgtttggttcattagagagagcaattgttgaggttgatgaacttgcagaagaaattgaaggactcgaaaagagcattgaagtgaaaaaacaaggatacacatccttcaagcttcagtcgtcacaaatgcttgaaaagaaagttttgcttgataataagctatcagcactaagatactccgtatcaagcttttcctcatcagttggttacttcgaacaacgggaagctcaaacaagagcaagattgaatgcttcatctacttgtctcaaccaaaagaaagcaaaattgactcatcttcaagcatctaaggttgaactcctggaagcacagatgcaggctaaacagtcagaatcagaactaagaaacatcctagcagaatcaaaatcaagattggaagacgagaatcaaaggctggaaagtgacagagttctctttgccatagataacattgataaacccgatatccaattgccagaaaggagttggcagttgagtggcaaagctactgaatttactcagtctgaggaagaaaaacaaagatacagaatcnaatgaagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="61250" stop="62571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61550" g_stop="62271" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E389755" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61550" e_stop="62271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTACTTAATGAACTTGCTGAGGATCTGAAGCAGGATGTTGAAATGGAAGATAAGTCATCAGATATTTTGCATAATCCTATTTCAGAGGACCTAAGTTTGTTGAGGATGAAGCTTGAAGGAGCGCAGGAAAAGCTTCTAAAATCTGCCAATACCATAAGTATGTTTGGTTCATTAGAGAGAGCAATTGTTGAGGTTGATGAACTTGCAGAAGAAATTGAAGGACTCGAAAAGAGCATTGAAGTGAAAAAACAAGGATACACATCCTTCAAGCTTCAGTCGTCACAAATGCTTGAAAAGAAAGTTTTGCTTGATAATAAGCTATCAGCACTAAGATACTCCGTATCAAGCTTTTCCTCATCAGTTGGTTACTTCGAACAACGGGAAGCTCAAACAAGAGCAAGATTGAATGCTTCATCTACTTGTCTCAACCAAAAGAAAGCAAAATTGACTCATCTTCAAGCATCTAAGGTTGAACTCCTGGAAGCACAGATGCAGGCTAAACAGTCAGAATCAGAACTAAGAAACATCCTAGCAGAATCAAAATCAAGATTGGAAGACGAGAATCAAAGGCTGGAAAGTGACAGAGTTCTCTTTGCCATAGATAACATTGATAAACCCGATATCCAATTGCCAGAAAGGAGTTGGCAGTTGAGTGGCAAAGCTACTGAA-TTACTCAAGTCTGAGGAAGAAAAAACAAAGATACAGAATCAAATGAAGCAG</genome_strand>
        <mrna_strand>CTGTACTTAATGAACTTGCTGAGGATCTGAAGCAGGATGTTGAAATGGAAGATAAGTCATCAGATATTTTGCATAATCCTATTTCAGAGGACCTAAGTTTGTTGAGGATGAAGCTTGAAGGAGCGCAGGAAAAGCTTCTAAAATCTGCCAATACCATAAGTATGTTTGGTTCATTAGAGAGAGCAATTGTTGAGGTTGATGAACTTGCAGAAGAAATTGAAGGACTCGAAAAGAGCATTGAAGTGAAAAAACAAGGATACACATCCTTCAAGCTTCAGTCGTCACAAATGCTTGAAAAGAAAGTTTTGCTTGATAATAAGCTATCAGCACTAAGATACTCCGTATCAAGCTTTTCCTCATCAGTTGGTTACTTCGAACAACGGGAAGCTCAAACAAGAGCAAGATTGAATGCTTCATCTACTTGTCTCAACCAAAAGAAAGCAAAATTGACTCATCTTCAAGCATCTAAGGTTGAACTCCTGGAAGCACAGATGCAGGCTAAACAGTCAGAATCAGAACTAAGAAACATCCTAGCAGAATCAAAATCAAGATTGGAAGACGAGAATCAAAGGCTGGAAAGTGACAGAGTTCTCTTTGCCATAGATAACATTGATAAACCCGATATCCAATTGCCAGAAAGGAGTTGGCAGTTGAGTGGCAAAGCTACTGAATTTACTC-AGTCTGAGGAAG-AAAAACAAAGATACAGAATCNAATGAAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550159" ref_strand="+" ref_description="SGN-E550159 [TUS-5-C8]">
      <seq>ctgtacttaatgaacttgctgaggatctgaagcaggatgttgaaatggaagataagtcatcagatattttgcataatcctatttcagaggacctaagtttgttgaggatgaagcttgaaggagcgcaggaaaagcttctaaaatctgccaataccataagtatgtttggttcattagagagagcaattgttgaggttgatgaacttgcagaagaaattgaaggactcgaaaagagcattgaagtgaaaaaacaaggatacacatccttcaagcttcagtcgtcacaaatgcttgaaaagaaagttttgcttgataataagctatcagcactaagatactccgtatcaagcttttcctcatcagttggttacttcgaacaacgggaagctcaaacaagagcaagattgaatgcttcatctacttgtctcaaccaaaagaaagcaaaattgactcatcttcaagcatctaaggttgaactcctggaagcacagatgcaggctaaacagtcagaatcagaactaagaaacatcctagcagaatcaaaatcaagattggaagacgagaatcaaaggctggaaagtgacagagttctctttgccatagataacatttgataacccgatatccnattgccagaaaggagttggcagttgagtggcaaagctactgaattnactcagtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="61250" stop="62534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61550" g_stop="62234" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E550159" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61550" e_stop="62234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTACTTAATGAACTTGCTGAGGATCTGAAGCAGGATGTTGAAATGGAAGATAAGTCATCAGATATTTTGCATAATCCTATTTCAGAGGACCTAAGTTTGTTGAGGATGAAGCTTGAAGGAGCGCAGGAAAAGCTTCTAAAATCTGCCAATACCATAAGTATGTTTGGTTCATTAGAGAGAGCAATTGTTGAGGTTGATGAACTTGCAGAAGAAATTGAAGGACTCGAAAAGAGCATTGAAGTGAAAAAACAAGGATACACATCCTTCAAGCTTCAGTCGTCACAAATGCTTGAAAAGAAAGTTTTGCTTGATAATAAGCTATCAGCACTAAGATACTCCGTATCAAGCTTTTCCTCATCAGTTGGTTACTTCGAACAACGGGAAGCTCAAACAAGAGCAAGATTGAATGCTTCATCTACTTGTCTCAACCAAAAGAAAGCAAAATTGACTCATCTTCAAGCATCTAAGGTTGAACTCCTGGAAGCACAGATGCAGGCTAAACAGTCAGAATCAGAACTAAGAAACATCCTAGCAGAATCAAAATCAAGATTGGAAGACGAGAATCAAAGGCTGGAAAGTGACAGAGTTCTCTTTGCCATAGATAACATTGATAAACCCGATATCCAATTGCCAGAAAGGAGTTGGCAGTTGAGTGGCAAAGCTACTGAATT-ACTCAAGTCTGA</genome_strand>
        <mrna_strand>CTGTACTTAATGAACTTGCTGAGGATCTGAAGCAGGATGTTGAAATGGAAGATAAGTCATCAGATATTTTGCATAATCCTATTTCAGAGGACCTAAGTTTGTTGAGGATGAAGCTTGAAGGAGCGCAGGAAAAGCTTCTAAAATCTGCCAATACCATAAGTATGTTTGGTTCATTAGAGAGAGCAATTGTTGAGGTTGATGAACTTGCAGAAGAAATTGAAGGACTCGAAAAGAGCATTGAAGTGAAAAAACAAGGATACACATCCTTCAAGCTTCAGTCGTCACAAATGCTTGAAAAGAAAGTTTTGCTTGATAATAAGCTATCAGCACTAAGATACTCCGTATCAAGCTTTTCCTCATCAGTTGGTTACTTCGAACAACGGGAAGCTCAAACAAGAGCAAGATTGAATGCTTCATCTACTTGTCTCAACCAAAAGAAAGCAAAATTGACTCATCTTCAAGCATCTAAGGTTGAACTCCTGGAAGCACAGATGCAGGCTAAACAGTCAGAATCAGAACTAAGAAACATCCTAGCAGAATCAAAATCAAGATTGGAAGACGAGAATCAAAGGCTGGAAAGTGACAGAGTTCTCTTTGCCATAGATAACATTTGATAACCCGATATCCNATTGCCAGAAAGGAGTTGGCAGTTGAGTGGCAAAGCTACTGAATTNACTC-AGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231417" ref_strand="+" ref_description="SGN-E231417 [cLED-4-A17]">
      <seq>tgtacttaatgaacttgctgaggatctgaagcaggatgttgaaatggaagataagtcatcagatattttgcataatcctatttcagaggacctaagtttgttgaggatgaagcttgaaggagcgcacgaaaagcttctaaaatctgccaataccataagtatgtttggttcattagagagagcaattgttgaggttgatgaacttgcagaagaaattgaaggactcgaaaagagcattgaagtgaaaaaacaaggatacacatccttcaagcttcagtcgtcacaaatgcttgaaaagaaagtcttgcttgataataagctatcagcgctaagatactccgtatcaagcttttcctcatcagttggttacttcgaacaacgggaagctcaaacaagagcaagattgaatgcttcatctacttgtctcaaccaaaagaaagcaaaattgactcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="61251" stop="62306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61551" g_stop="62006" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E231417" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61551" e_stop="62006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACTTAATGAACTTGCTGAGGATCTGAAGCAGGATGTTGAAATGGAAGATAAGTCATCAGATATTTTGCATAATCCTATTTCAGAGGACCTAAGTTTGTTGAGGATGAAGCTTGAAGGAGCGCAGGAAAAGCTTCTAAAATCTGCCAATACCATAAGTATGTTTGGTTCATTAGAGAGAGCAATTGTTGAGGTTGATGAACTTGCAGAAGAAATTGAAGGACTCGAAAAGAGCATTGAAGTGAAAAAACAAGGATACACATCCTTCAAGCTTCAGTCGTCACAAATGCTTGAAAAGAAAGTTTTGCTTGATAATAAGCTATCAGCACTAAGATACTCCGTATCAAGCTTTTCCTCATCAGTTGGTTACTTCGAACAACGGGAAGCTCAAACAAGAGCAAGATTGAATGCTTCATCTACTTGTCTCAACCAAAAGAAAGCAAAATTGACTCATCT</genome_strand>
        <mrna_strand>TGTACTTAATGAACTTGCTGAGGATCTGAAGCAGGATGTTGAAATGGAAGATAAGTCATCAGATATTTTGCATAATCCTATTTCAGAGGACCTAAGTTTGTTGAGGATGAAGCTTGAAGGAGCGCACGAAAAGCTTCTAAAATCTGCCAATACCATAAGTATGTTTGGTTCATTAGAGAGAGCAATTGTTGAGGTTGATGAACTTGCAGAAGAAATTGAAGGACTCGAAAAGAGCATTGAAGTGAAAAAACAAGGATACACATCCTTCAAGCTTCAGTCGTCACAAATGCTTGAAAAGAAAGTCTTGCTTGATAATAAGCTATCAGCGCTAAGATACTCCGTATCAAGCTTTTCCTCATCAGTTGGTTACTTCGAACAACGGGAAGCTCAAACAAGAGCAAGATTGAATGCTTCATCTACTTGTCTCAACCAAAAGAAAGCAAAATTGACTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327233" ref_strand="+" ref_description="SGN-E327233 [cTOC-19-K23]">
      <seq>gaaaagaaagttttgcttgataataagctatcagcactaagatactccgtatctggcttttcctcatcagttggttacttctagcaacgggaagctctgacaagagcgagattgaatgcttcatctacttgtctcaaccaagagaaagcacaattgactcatcttctagcatctaggggtgaactcctggaagcacagatgcaggctatgcagtcggaatcagaactaggaaacatcctagcataatcaaaatcgatattggaagacgagaatgctaggctggaaagtgacagagttctctttgccatagataacattgataaacccgatatccaattgccacaaaggagttggcagttgagtggcatagctactgaattactcaagtctgaggaagaacaaacaaagatgcagaatcagatgaagcagattagggaacatttggggataaagaacaaggaaatcgaagacttagacgaagaaagactgaattcagagaaagatattgaggctactgaagaggagatagataatatttcgcaatctgtaaaggagatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="61543" stop="62702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61843" g_stop="62402" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E327233" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61843" e_stop="62402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAAAGTTTTGCTTGATAATAAGCTATCAGCACTAAGATACTCCGTATCAAGCTTTTCCTCATCAGTTGGTTACTTCGAACAACGGGAAGCTCAAACAAGAGCAAGATTGAATGCTTCATCTACTTGTCTCAACCAAAAGAAAGCAAAATTGACTCATCTTCAAGCATCTAAGGTTGAACTCCTGGAAGCACAGATGCAGGCTAAACAGTCAGAATCAGAACTAAGAAACATCCTAGCAGAATCAAAATCAAGATTGGAAGACGAGAATCAAAGGCTGGAAAGTGACAGAGTTCTCTTTGCCATAGATAACATTGATAAACCCGATATCCAATTGCCAGAAAGGAGTTGGCAGTTGAGTGGCAAAGCTACTGAATTACTCAAGTCTGAGGAAGAAAAAACAAAGATACAGAATCAAATGAAGCAGATTAGGGAAAATTTGGGGATAAAGAAGAAGGAAATCGAAGACTTAAACGAAAAAAGACTGAATTCAGAGAAAGATATTGAGGCTACTGAAAAGGAGATAGAGAATATTTCGCAATCTGTAAAGGAGATGGG</genome_strand>
        <mrna_strand>GAAAAGAAAGTTTTGCTTGATAATAAGCTATCAGCACTAAGATACTCCGTATCTGGCTTTTCCTCATCAGTTGGTTACTTCTAGCAACGGGAAGCTCTGACAAGAGCGAGATTGAATGCTTCATCTACTTGTCTCAACCAAGAGAAAGCACAATTGACTCATCTTCTAGCATCTAGGGGTGAACTCCTGGAAGCACAGATGCAGGCTATGCAGTCGGAATCAGAACTAGGAAACATCCTAGCATAATCAAAATCGATATTGGAAGACGAGAATGCTAGGCTGGAAAGTGACAGAGTTCTCTTTGCCATAGATAACATTGATAAACCCGATATCCAATTGCCACAAAGGAGTTGGCAGTTGAGTGGCATAGCTACTGAATTACTCAAGTCTGAGGAAGAACAAACAAAGATGCAGAATCAGATGAAGCAGATTAGGGAACATTTGGGGATAAAGAACAAGGAAATCGAAGACTTAGACGAAGAAAGACTGAATTCAGAGAAAGATATTGAGGCTACTGAAGAGGAGATAGATAATATTTCGCAATCTGTAAAGGAGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327417" ref_strand="+" ref_description="SGN-E327417 [cTOC-19-K20]">
      <seq>gaaaagaaagttttgcttgataataagctatcagcactaagatactccgtatcaagcttttcctcatcagttggttacttcgaacaacgggaagctcaaacaagagcaagattgaatgcttcatctacttgtctcaaccaaaagaaagcaaaattgactcatcttcaagcatctaaggttgaactcctggaagcacagatgcaggctaaacagtcagaatcagaactaagaaacatcctagcagaatcaaaatcaagattggaagacgagaatcaaaggctggaaagtgacagagttctctttgccatagataacattgataaacccgatatccaattgccagaaaggagttggcagttgagtggcaaagctactgaattactcaagtctgaggaagaaaaaacaaagatacagaatcaaatgaagcagattacggaaaatttggggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="61543" stop="62592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61843" g_stop="62292" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E327417" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61843" e_stop="62292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAAAGTTTTGCTTGATAATAAGCTATCAGCACTAAGATACTCCGTATCAAGCTTTTCCTCATCAGTTGGTTACTTCGAACAACGGGAAGCTCAAACAAGAGCAAGATTGAATGCTTCATCTACTTGTCTCAACCAAAAGAAAGCAAAATTGACTCATCTTCAAGCATCTAAGGTTGAACTCCTGGAAGCACAGATGCAGGCTAAACAGTCAGAATCAGAACTAAGAAACATCCTAGCAGAATCAAAATCAAGATTGGAAGACGAGAATCAAAGGCTGGAAAGTGACAGAGTTCTCTTTGCCATAGATAACATTGATAAACCCGATATCCAATTGCCAGAAAGGAGTTGGCAGTTGAGTGGCAAAGCTACTGAATTACTCAAGTCTGAGGAAGAAAAAACAAAGATACAGAATCAAATGAAGCAGATTAGGGAAAATTTGGGGATA</genome_strand>
        <mrna_strand>GAAAAGAAAGTTTTGCTTGATAATAAGCTATCAGCACTAAGATACTCCGTATCAAGCTTTTCCTCATCAGTTGGTTACTTCGAACAACGGGAAGCTCAAACAAGAGCAAGATTGAATGCTTCATCTACTTGTCTCAACCAAAAGAAAGCAAAATTGACTCATCTTCAAGCATCTAAGGTTGAACTCCTGGAAGCACAGATGCAGGCTAAACAGTCAGAATCAGAACTAAGAAACATCCTAGCAGAATCAAAATCAAGATTGGAAGACGAGAATCAAAGGCTGGAAAGTGACAGAGTTCTCTTTGCCATAGATAACATTGATAAACCCGATATCCAATTGCCAGAAAGGAGTTGGCAGTTGAGTGGCAAAGCTACTGAATTACTCAAGTCTGAGGAAGAAAAAACAAAGATACAGAATCAAATGAAGCAGATTACGGAAAATTTGGGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550411" ref_strand="+" ref_description="SGN-E550411 [TUS-5-C8](-)">
      <seq>agaatcaaatgaagcagattagggaaaatttgggataaaagaagaaggaaatcgaagacttaaacgaaaaaagactgaattcagagaaagatattgaggctactgaaaaggagatagagaatatttcgcaatctgtaaaggagatgggcaacaagcttcaaagggtcatcggggagaagcagatgatctttgaaatgaaagagaacgggaagaaagagtttgagaacatgattcttgagtatcacgagagtatgtttgcagcatcgttgaaggaggaagagttgaagattttggacgaagaattgcagttggagatgagtaaaatagaagatttgcaaagagaaaaagctcttgccacaagcagaaaaactcagttgctgaatgcattatcgtgccaatcatactctttgtctgacaaggtagaggaggatctacatgacatacgaaggtcagtactagagctgaactcgttgcttggaaattgattgtttgactgacagttaattgcctgtttaactgtcaagtataaaacatcttctctaaaagaaacttctctctgttgcattgctgctgccttaatgtattgtcgatataaaattctccttacgcaaatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="61955" stop="63171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62255" g_stop="62871" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E550411" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62255" e_stop="62871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCAAATGAAGCAGATTAGGGAAAATTTGGGGATAAAGAAGAAGGAAATCGAAGACTTAAACGAAAAAAGACTGAATTCAGAGAAAGATATTGAGGCTACTGAAAAGGAGATAGAGAATATTTCGCAATCTGTAAAGGAGATGGGCAACAAGCTTCAAAGGGTCATCGGGGAGAAGCAGATGATCTTTGAAATGAAAGAGAACGGGAAGAAAGAGTTTGAGAACATGATTCTTGAGTATCACGAGAGTATGTTTGCAGCATCGTTGAAGGAGGAAGAGTTGAAGATTTTGGACGAAGAATTGCAGTTGGAGATGAGTAAAATAGAAGATTTGCAAAGAGAAAAAGCTCTTGCCACAAGCAGAAAAACTCAGTTGCTGAATGCATTATCGTGCCAATCATACTCTTTGTCTGACAAGGTAGAGGAGGATCTACATGACATACGAAGGTCAGTACTAGAGCTGAACTCGTTGCTTGGAAATTGATTGTTTGACTGACAGTTAATTGCCTGTTTAACTGTCAAGTATAAAACATCTTCTCTAAAAGAAACTTCTCTCTGTTGCATTGCTGCTGCCTTAATGTATTGTCGATATAAAATTCTCCTTACGCAAATGGTG</genome_strand>
        <mrna_strand>AGAATCAAATGAAGCAGATTAGGGAAAATTTGGGATAAAAGAAGAAGGAAATCGAAGACTTAAACGAAAAAAGACTGAATTCAGAGAAAGATATTGAGGCTACTGAAAAGGAGATAGAGAATATTTCGCAATCTGTAAAGGAGATGGGCAACAAGCTTCAAAGGGTCATCGGGGAGAAGCAGATGATCTTTGAAATGAAAGAGAACGGGAAGAAAGAGTTTGAGAACATGATTCTTGAGTATCACGAGAGTATGTTTGCAGCATCGTTGAAGGAGGAAGAGTTGAAGATTTTGGACGAAGAATTGCAGTTGGAGATGAGTAAAATAGAAGATTTGCAAAGAGAAAAAGCTCTTGCCACAAGCAGAAAAACTCAGTTGCTGAATGCATTATCGTGCCAATCATACTCTTTGTCTGACAAGGTAGAGGAGGATCTACATGACATACGAAGGTCAGTACTAGAGCTGAACTCGTTGCTTGGAAATTGATTGTTTGACTGACAGTTAATTGCCTGTTTAACTGTCAAGTATAAAACATCTTCTCTAAAAGAAACTTCTCTCTGTTGCATTGCTGCTGCCTTAATGTATTGTCGATATAAAATTCTCCTTACGCAAATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E389492" ref_strand="+" ref_description="SGN-E389492 [TUS-4-C8](-)">
      <seq>agaaaaagctcttgccacaagcagaaaaactcagttgctgaatgcattatcgtgccaatcatactctttgtctgacaaggtagaggaggatctacatgacatacgaaggtcagtactagagctgaagtcgttgcttggaaattgattgtttgactgacagttaattgcctgtttaactgtcaagtataaaacatcttctctaaaagaaacttctctgtgtagcattgctgctgccttaatgtattgtcgatataaaattctccttacgcaaatggtgggatgtattacaaaaccatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="62295" stop="63194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62595" g_stop="62894" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E389492" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62595" e_stop="62894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAGCTCTTGCCACAAGCAGAAAAACTCAGTTGCTGAATGCATTATCGTGCCAATCATACTCTTTGTCTGACAAGGTAGAGGAGGATCTACATGACATACGAAGGTCAGTACTAGAGCTGAACTCGTTGCTTGGAAATTGATTGTTTGACTGACAGTTAATTGCCTGTTTAACTGTCAAGTATAAAACATCTTCTCTAAAAGAAACTTCTCTCTGTTGCATTGCTGCTGCCTTAATGTATTGTCGATATAAAATTCTCCTTACGCAAATGGTGTGATGTATTACAAAACCATATTA</genome_strand>
        <mrna_strand>AGAAAAAGCTCTTGCCACAAGCAGAAAAACTCAGTTGCTGAATGCATTATCGTGCCAATCATACTCTTTGTCTGACAAGGTAGAGGAGGATCTACATGACATACGAAGGTCAGTACTAGAGCTGAAGTCGTTGCTTGGAAATTGATTGTTTGACTGACAGTTAATTGCCTGTTTAACTGTCAAGTATAAAACATCTTCTCTAAAAGAAACTTCTCTGTGTAGCATTGCTGCTGCCTTAATGTATTGTCGATATAAAATTCTCCTTACGCAAATGGTGGGATGTATTACAAAACCATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236561" ref_strand="+" ref_description="SGN-E236561 [cLED-13-G14]">
      <seq>aagagtactatacggccaaacacttataatttccaaagttttctttgttgatttcaaagttcaacccttttctcacttaactatattctacttatgtgtatggtatcatcagtgtctgtttccacagctgagaaagagtcttttttctcgagattacgaaatatgtttcatttcagaaggaatgaagatgagaagaagacaacgacaacaacaacaacgagagctgctgctgctgcagcaactactactactaactgtgttcctgtgagtgacaatggtggtagtagtaacaagggagagttagagagggtgtttacgtactttgatgagaatggagatggaaaagtgtcacctgcagagttgaggaagtgtgtgaaggcggtaggaggtgagctgacggtggaggaggcggagatggcagtgaggctatcggattctgatggggacggattattgggcattgaggattttacgaaactgatggaaggaatggaggaagagaggaataaagagggtgagttgatgggagcatttggaatgtatgaaacagaaggatacattactcctaagagcttgaagaacatgttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="64271" stop="63081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63971" g_stop="63381" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E236561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63971" e_stop="63381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTACTATACGGCCAAACACTTATAATTTCCAAAGTTTTCTTTGTTGATTTCAAAGTTCAACCCTTTTCTCACTTAACTATATTCTACTTATGTGTATGGTATCATCAGTGTCTGTTTCCACAGCTGAGAAAGAGTCTTTTTTCTCGAGATTACGAAATATGTTTCATTTCAGAAGGAATGAAGATGAGAAGAAGACAACGACAACAACAACAACGAGAGCTGCTGCTGCTGCAGCAACTACTACTACTAACTGTGTTCCTGTGAGTGACAATGGTGGTAGTAGTAACAAGGGAGAGTTAGAGAGGGTGTTTACGTACTTTGATGAGAATGGAGATGGAAAAGTGTCACCTGCAGAGTTGAGGAAGTGTGTGAAGGCGGTAGGAGGTGAGCTGACGGTGGAGGAGGCGGAGATGGCAGTGAGGCTATCGGATTCTGATGGGGACGGATTATTGGGCATTGAGGATTTTACGAAACTGATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGGGTGAGTTGATGGGAGCATTTGGAATGTATGAAACAGAAGGATACATTACTCCTAAGAGCTTGAAGAACATGTTGAGT</genome_strand>
        <mrna_strand>AAGAGTACTATACGGCCAAACACTTATAATTTCCAAAGTTTTCTTTGTTGATTTCAAAGTTCAACCCTTTTCTCACTTAACTATATTCTACTTATGTGTATGGTATCATCAGTGTCTGTTTCCACAGCTGAGAAAGAGTCTTTTTTCTCGAGATTACGAAATATGTTTCATTTCAGAAGGAATGAAGATGAGAAGAAGACAACGACAACAACAACAACGAGAGCTGCTGCTGCTGCAGCAACTACTACTACTAACTGTGTTCCTGTGAGTGACAATGGTGGTAGTAGTAACAAGGGAGAGTTAGAGAGGGTGTTTACGTACTTTGATGAGAATGGAGATGGAAAAGTGTCACCTGCAGAGTTGAGGAAGTGTGTGAAGGCGGTAGGAGGTGAGCTGACGGTGGAGGAGGCGGAGATGGCAGTGAGGCTATCGGATTCTGATGGGGACGGATTATTGGGCATTGAGGATTTTACGAAACTGATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGGGTGAGTTGATGGGAGCATTTGGAATGTATGAAACAGAAGGATACATTACTCCTAAGAGCTTGAAGAACATGTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242389" ref_strand="+" ref_description="SGN-E242389 [cLED-30-E21]">
      <seq>aagagtactatacggccaaacacttataatttccaaagttttctttgttgatttcaaagttcaacccttttctcacttaactatattctacttatgtgtatggtatcatcagtgtctgtttccacagctgagaaagagtcttttttctcgagattacgaaatatgtttcatttcagaaggaatgaagatgagaagaagacaacgacaacaacaacaacgagagctgctgctgctgcagcaactactactactaactgtgttcctgtgagtgacaatggtggtagtagtaacaagggagagttagagagggtgtttacgtactttgatgagaatggagatggaaaagtgtcacctgcagagttgaggaagtgtgtgaaggcggtaggaggtgagctgacggtggaggaggcggagatggcagtgaggctatcggattctgatggggacggattattgggcattgaggattttacgaaactgatggaaggaatggaggaagagaggaataaagagggtgagttgatgggagcatttggaatgtatgaaacagaaggatacattactcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="64271" stop="63105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63971" g_stop="63405" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E242389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63971" e_stop="63405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTACTATACGGCCAAACACTTATAATTTCCAAAGTTTTCTTTGTTGATTTCAAAGTTCAACCCTTTTCTCACTTAACTATATTCTACTTATGTGTATGGTATCATCAGTGTCTGTTTCCACAGCTGAGAAAGAGTCTTTTTTCTCGAGATTACGAAATATGTTTCATTTCAGAAGGAATGAAGATGAGAAGAAGACAACGACAACAACAACAACGAGAGCTGCTGCTGCTGCAGCAACTACTACTACTAACTGTGTTCCTGTGAGTGACAATGGTGGTAGTAGTAACAAGGGAGAGTTAGAGAGGGTGTTTACGTACTTTGATGAGAATGGAGATGGAAAAGTGTCACCTGCAGAGTTGAGGAAGTGTGTGAAGGCGGTAGGAGGTGAGCTGACGGTGGAGGAGGCGGAGATGGCAGTGAGGCTATCGGATTCTGATGGGGACGGATTATTGGGCATTGAGGATTTTACGAAACTGATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGGGTGAGTTGATGGGAGCATTTGGAATGTATGAAACAGAAGGATACATTACTCCT</genome_strand>
        <mrna_strand>AAGAGTACTATACGGCCAAACACTTATAATTTCCAAAGTTTTCTTTGTTGATTTCAAAGTTCAACCCTTTTCTCACTTAACTATATTCTACTTATGTGTATGGTATCATCAGTGTCTGTTTCCACAGCTGAGAAAGAGTCTTTTTTCTCGAGATTACGAAATATGTTTCATTTCAGAAGGAATGAAGATGAGAAGAAGACAACGACAACAACAACAACGAGAGCTGCTGCTGCTGCAGCAACTACTACTACTAACTGTGTTCCTGTGAGTGACAATGGTGGTAGTAGTAACAAGGGAGAGTTAGAGAGGGTGTTTACGTACTTTGATGAGAATGGAGATGGAAAAGTGTCACCTGCAGAGTTGAGGAAGTGTGTGAAGGCGGTAGGAGGTGAGCTGACGGTGGAGGAGGCGGAGATGGCAGTGAGGCTATCGGATTCTGATGGGGACGGATTATTGGGCATTGAGGATTTTACGAAACTGATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGGGTGAGTTGATGGGAGCATTTGGAATGTATGAAACAGAAGGATACATTACTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205699" ref_strand="+" ref_description="SGN-E205699 [cLEC-21-G10]">
      <seq>aagagtactatacggccaaacacttataatttccaaagttggtctttgttgatttcaaagttcaacccttttctcacttaactatattctacttatgtgtatggtatcatcagtgtctgtttccacagctgagaaagagtcttttttctcgagattacgaaatatgtttcatttcagaaggaatgaagatgagaagaagacaacgacaacaacaacaacgagagctgctgctgctgcagcaactactactactaactgtgttcctgtgagtgacaatggtggtagtagtaacaagggagagttagagagggtgtttacgtactttgatgagaatggagatggaaaagtgtcacctgcagagttgaggaagtgtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="64271" stop="63296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63971" g_stop="63596" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E205699" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63971" e_stop="63596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTACTATACGGCCAAACACTTATAATTTCCAAAGTT-TTCTTTGTTGATTTCAAAGTTCAACCCTTTTCTCACTTAACTATATTCTACTTATGTGTATGGTATCATCAGTGTCTGTTTCCACAGCTGAGAAAGAGTCTTTTTTCTCGAGATTACGAAATATGTTTCATTTCAGAAGGAATGAAGATGAGAAGAAGACAACGACAACAACAACAACGAGAGCTGCTGCTGCTGCAGCAACTACTACTACTAACTGTGTTCCTGTGAGTGACAATGGTGGTAGTAGTAACAAGGGAGAGTTAGAGAGGGTGTTTACGTACTTTGATGAGAATGGAGATGGAAAAGTGTCACCTGCAGAGTTGAGGAAGTGTGTGA</genome_strand>
        <mrna_strand>AAGAGTACTATACGGCCAAACACTTATAATTTCCAAAGTTGGTCTTTGTTGATTTCAAAGTTCAACCCTTTTCTCACTTAACTATATTCTACTTATGTGTATGGTATCATCAGTGTCTGTTTCCACAGCTGAGAAAGAGTCTTTTTTCTCGAGATTACGAAATATGTTTCATTTCAGAAGGAATGAAGATGAGAAGAAGACAACGACAACAACAACAACGAGAGCTGCTGCTGCTGCAGCAACTACTACTACTAACTGTGTTCCTGTGAGTGACAATGGTGGTAGTAGTAACAAGGGAGAGTTAGAGAGGGTGTTTACGTACTTTGATGAGAATGGAGATGGAAAAGTGTCACCTGCAGAGTTGAGGAAGTGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213763" ref_strand="+" ref_description="SGN-E213763 [cLEC-76-G1]">
      <seq>aacaatggagagttagggtatttacgtactttgatgagaatggagatgggaaggtgtcaccaatggagctaaggagatgcatgaaggcggtaggaggtgagataacggtgaaggaggcggagatggtggtgaggctatcggattctgatggggacgggttgttagggtttgaggattttacgaagttaatggaaggaatggaagaaaagaggaataaagagagtgagttgatgggagcatttggaatgtatgaaatggaaggatacattactcctaagagcttgaagatgatgttgagtcgactcggcgagtcaacctccattgataaatgcaagggtatgataaggagatttgatatcaatggagatggagttcttaattttgatgagtttaaaattatgatgacatgttagaagaattcaaagagaaatatttgtgtaattactaaataagattcttgtgatcaaataattcattgagatttttcatttcatatttgtaaagtccatatttcatgaattggaacatggtttacctctttatttggtaaattattccatgaaccaagtatataattactatcgttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="65880" stop="64690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65580" g_stop="64998" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="601"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E213763" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65580" e_stop="64998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGAGAGTTAGGGTATTTACGTACTTTGATGAGAATGGAGATGGGAAGGTGTCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGAAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAAGAAAAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATATCAATGGAGATGGAGTTCTTAGTTTTGATGAGTTTAAAATTATGATGACATGTTAGAAGAGTTCAAAGAGAAATATTTGTGTAATTACTAAATAGGATTCTTGTGATCAAATAATTCATTGAGATTTTTCATTTCATATTTGTAAAGTCCATATTTCATGAATTGGAGCATGTTTTACTTCTTTATTTGTTAAATTATTCAATGAACCAAGTATATAATTACTATC</genome_strand>
        <mrna_strand>AACAATGGAGAGTTAGGGTATTTACGTACTTTGATGAGAATGGAGATGGGAAGGTGTCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGAAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAAGAAAAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGGTATGATAAGGAGATTTGATATCAATGGAGATGGAGTTCTTAATTTTGATGAGTTTAAAATTATGATGACATGTTAGAAGAATTCAAAGAGAAATATTTGTGTAATTACTAAATAAGATTCTTGTGATCAAATAATTCATTGAGATTTTTCATTTCATATTTGTAAAGTCCATATTTCATGAATTGGAACATGGTTTACCTCTTTATTTGGTAAATTATTCCATGAACCAAGTATATAATTACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722612" ref_strand="-" ref_description="SGN-E722612 [FC17DB12]">
      <seq>tagtaattatatacttggttcattgaataatttaacaaataaagaagtaaaacatgctccaattcatgaaatatggactttacaaatatgaaatgaaaaatctcaatgaattatttgatcacaagaatcctatttagtaattacacaaatatttctctttgaactcttctaacatgtcatcataattttaaactcatcaaaactaagaactccatctccattgatatcaaatctccttatcataaccttgcatttatcaatggaggttgactcgccgagtcgactcaacatcatcttcaagctcttaggagtaatgtatccttccatttcatacattccaaatgctcccatcaactcactctctttattcctctcttcctccattccttccattaacttcgtaaaatcctcaaaccctaacaacccgtccccatcagaatccgatagcctcaccaccatctccgcctcctccaccgttatctcacctcctaccgccttcatgcatctccttagctccattggtgatacctttccatctccattctcatcaaagtacgtaaataccctctctaactcaccactattgctatcactcaccgataaacgatcaatagtactagtactagtaatagttgttgttgttgttacactctcatgttccttcttaggagtattagccttctttagaaaaaaccttttacgtaatcttgagaaaaaagattccttttcagccatggaaacagaaactaactccatattagacatgctatagatgtaagtaagaaaatgagtaagtgatataagagttttaactttgaaacaaagaaatcttaggaaagttatataattgtttgttgttgaaagacaagaaataaaggatttatatgatgatcaattcggccgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="64700" stop="68390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65000" g_stop="65314" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65315" i_stop="67528" i_length="2214">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67529" g_stop="68074" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="863" r_length="548" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E722612" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722612" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65000" e_stop="65314"/>
          <exon e_start="67529" e_stop="68074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAATTATATACTTGGTTCATTGAATAATTTAACAAATAAAGAAGTAAAACATGCTCCAATTCATGAAATATGGACTTTACAAATATGAAATGAAAAATCTCAATGAATTATTTGATCACAAGAATCCTATTTAGTAATTACACAAATATTTCTCTTTGAACTCTTCTAACATGTCATCATAATTTTAAACTCATCAAAACTAAGAACTCCATCTCCATTGATATCAAATCTCCTTATCATAACCTTGCATTTATCAATGGAGGTTGACTCGCCGAGTCGACTCAACATCATCTTCAAGCTCTTAGGAGTAATGTATCCTTCCATTTCATACATTCCAAATGCTCCCATCAACTCACTCTCTTTATTCCTCTTTTCTTCCATTCCTTCCATTAACTTCGTAAAATCCTCAAACCCTAACAACCCGTCCCCATCAGAATCCGATAGCCTCACCACCATCTCCGCCTCCTTCACCGTTATCTCACCTCCTACCGCCTTCATGCATCTCCTTAGCTCCATTGGTGACACCTTCCCATCTCCATTCTCATCAAAGTACGTAAATACCCTAACTCTCCATTGTTACTAGTAATAGTAGTGGCTGTTGTTGTTGCTGTTGTTGTCGTCTTCTTCTCGTCTTTCTTCTTTTTGAGATGAAACATATTCCGTAATCTTGAGAAAAAAGATTCCTTTACAGCTGTGGATATGGTGGGTCGTTAATTAATCAGTTTTAAAAAGAGGGATGAATTTCGACCTTGCTTTGAATCGTCAGGCTAGTAAAACTCTACTTCTAAAACAATCGTTAAGGTCATTCACTAGATACTGACGCGATACACATGCTAGTAAACAAATATACCTTTGAACTACTTTTTCTTTTATTCAAGAAAGTTTGAATATGAGTAAATGGAGTTGAACTTGAAATTAACAAAGAAAACTATGTAATAAAGACAAGAAGTCAAGGATATGGGAATGAAGGGAGAAGAATGGGCTATTTATAGTTAATGGGGTTGAAATTTGTATGGCCAATTGGTCTTGGTAGAAAAAAAAAGTAAACAGGAGACACGTTATAAAATATAATATAAAGTTTTTATAACATAATATAATTAATGACTACGTGTTTGATGTGTGTGTATGTATGTGTGTCTTTGGGGATTGAAATCTTTATATTATATTTTAAATATTGTGATGCCAAATTGACGTGTATCCTTAACTCTTATGACATCCTAAATAATGTCCTTTCTTTCCATTTCTTCTTGGAGTTCAATTTCTAATATGTGGGTTTTTAGAGTTTTTTATTTTTAATTTTTTGAAAAATAAGTGACTTTTATCTATTTTTTGATGTTTGGTTAGTAAATAGAAAATATAATTTTGAGAGCATTTAGTATAGTATAGGCAAATAATATGGCTAAGACTAAGACTTGAACTCAACATGAAACTCGACCCTGACCTTGTGTCGAGACCTCACATCTGGCCCAACCCCAACCTCAACTTGAAAATCTTACCCTTAGCTCTGATCCTGACTCTTGACTCAATCCCCTAACATGGATACCAAACCCGATCTTTAATCCACGACTCAAAATTTGGACATGATCCTCGACACGACTCAGAACTTGAGCCTTGGTTTGACCCTAACTAGAATCCAAGCTCACTCTTTGGTTTTGACTTTTGAATCAATACCTAATATCAATCACGACTCTAAACTCAAACCTTGTCTCGACCTCAACTAGGGACTCAACCCCCCACCCCCCGCCCGACCCTTATCATCCACTTTGAATCAATACTTGATCCCCCAACTTTGATATTGACCCAAGACTCAACCATAGCTTGTGACTCGATCCTTGAATCGAGACATGGATCTTGACCCTAGCTTGACCTCGACTAGGTTTCTAACCTATATTTTGATCCGCAATCTAATCTCGACAAGGGGCCCTATAAACGATACTCCTTTTAGGCCATATTAAGTGAACTATTGGAACATTCACATCCTTTTTTAAGAATACATTTCAGGACAAAATTCAAAGACTACTTTCCATTATCATACCTTTTGATTATTTTAAACTATTTATGAAAAAAATAAAAACTCCCAACAATTCTCTAGATATTTGAAAATTCACTTATTTTGAACTATGAAAAAAAATATCAAACAATTTACTTAATATGAAACCAGACTAGAGAAATACTTTTCAATATACACTATGAAAGAACAATAATAACATATTCACTTCTCCAAGTTAGTAAAAACCAAGGAATTGTTTCACAAATTTGAATCTATGAATGTATAAATCTCAACCAAAAACCATTTATATAATTACTAGAAACAAGAAGAAATAAAATAACAATAACAAGGCCAATAGGCCAAAAGAATTATGTACACAAATATCTCTTCTAACTTGTCATCATAACTTTGAACTCATCAAAGCTAAGAACTCCATCTCCATTAGTATCAAATCTCCTTATCATAACCTTGCATTTATCAATGGAGGTTGACTCGCCGAGTCGACTCAACATCATCTTCAAGCTCTTAGGAGTAATGTATCCTTCCATTTCATACATTCCAAATGCTCCCATCAACTCACTCTCTTTATTCCTCTCTTCCTCCATTCCTTCCATTAACTTCGTAAAATCCTCAAACCCTAACAACCCGTCCCCATCAGAATCCGATAGCCTCACCACCATCTCCGCCTCCTCCACCGTTATCTCACCTCCTACCGCCTTCATGCATCTCCTTAGCTCCATTGGTGATACCTTTCCATCTCCATTCTCATCAAAGTACGTAAATACCCTCTCTAACTCACCACTATTACTATCACTCACCGATAAACGATCAATAGTACTAGTACTAGTAATAGTTGTTGTTGTTGTTACACTCTCATGTTCCTTCTTAGGAGTATTAGCCTTCTTTAGAAAAAACCTTTTACGTAATCTTGAGAAAAAAGATCCCTTTTCAGCCATGGAAACAGTAACTAACACCATATTAGACATG--GTAGATGTAAGTAAGAAAATGAGTAAGTGATATAAGAGTTTTAACTTTGAAACAAAGAAATCTTAGGAAAGTTATATAATTTTTTGTTGTTGAAA</genome_strand>
        <mrna_strand>TAGTAATTATATACTTGGTTCATTGAATAATTTAACAAATAAAGAAGTAAAACATGCTCCAATTCATGAAATATGGACTTTACAAATATGAAATGAAAAATCTCAATGAATTATTTGATCACAAGAATCCTATTTAGTAATTACACAAATATTTCTCTTTGAACTCTTCTAACATGTCATCATAATTTTAAACTCATCAAAACTAAGAACTCCATCTCCATTGATATCAAATCTCCTTATCATAACCTTGCATTTATCAATGGAGGTTGACTCGCCGAGTCGACTCAACATCATCTTCAAGCTCTTAGGAGTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCTTCCATTTCATACATTCCAAATGCTCCCATCAACTCACTCTCTTTATTCCTCTCTTCCTCCATTCCTTCCATTAACTTCGTAAAATCCTCAAACCCTAACAACCCGTCCCCATCAGAATCCGATAGCCTCACCACCATCTCCGCCTCCTCCACCGTTATCTCACCTCCTACCGCCTTCATGCATCTCCTTAGCTCCATTGGTGATACCTTTCCATCTCCATTCTCATCAAAGTACGTAAATACCCTCTCTAACTCACCACTATTGCTATCACTCACCGATAAACGATCAATAGTACTAGTACTAGTAATAGTTGTTGTTGTTGTTACACTCTCATGTTCCTTCTTAGGAGTATTAGCCTTCTTTAGAAAAAACCTTTTACGTAATCTTGAGAAAAAAGATTCCTTTTCAGCCATGGAAACAGAAACTAACTCCATATTAGACATGCTATAGATGTAAGTAAGAAAATGAGTAAGTGATATAAGAGTTTTAACTTTGAAACAAAGAAATCTTAGGAAAGTTATATAATTGTTTGTTGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747358" ref_strand="+" ref_description="SGN-E747358 [GI|47104604]">
      <seq>gtctttattacatagttttctttgttaatttcaagttcaactccatttactcatattcaaactttcttgaataaaagaaaaagtagttcaaaggtatatttgtttactagcatgtgtatcgcgtcagtatctagtgaatgaccttaacgattgttttagaagtagagttttactagcctgacgattcaaagcaaggtcgaaattcatccctctttttaaaactgattaattaacgacccaccatatccacagctgtaaaggaatcttttttctcaagattacggaatatgtttcatctcaaaaagaagaaagacgagaagaagacgacaacaacagcaacaacaacagccactactattactagtaacaatggagagttagggtatttacgtactttgatgagaatggagatgggaaggtgtcaccaatggagctaaggagatgcatgaaggcggtaggaggtgagataacggtgaaggaggcggagatggtggtgaggctatcggattctgatggggacgggttgttagggtttgaggattttacgaagttaatggaaggaatggaagaaaagaggaataaagagagtgagttgatgggagcatttggaatgtatgaaatggaaggatacattactcctaagagcttgaagatgatgttgagtcgactcggcgagtcaacctccattgataaatgcaaggttatgataaggagatttgatatcaatggagatggagttcttagttttgatgagtttaaaattatgatgacatgttagaagagttcaaagagaaatatttgtgtaattactaaataggattcttgtgatcaaataattcattgagatttttcatttcatatttgtaaagtccatatttcatgaattggagcatgttttacttctttatttgttaaattattcaatgaaccaagtatataattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="66245" stop="64703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65945" g_stop="65003" g_length="943"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="943" r_length="943" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="944" polyA_stop="958"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E747358" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>943</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65945" e_stop="65003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTATTACATAGTTTTCTTTGTTAATTTCAAGTTCAACTCCATTTACTCATATTCAAACTTTCTTGAATAAAAGAAAAAGTAGTTCAAAGGTATATTTGTTTACTAGCATGTGTATCGCGTCAGTATCTAGTGAATGACCTTAACGATTGTTTTAGAAGTAGAGTTTTACTAGCCTGACGATTCAAAGCAAGGTCGAAATTCATCCCTCTTTTTAAAACTGATTAATTAACGACCCACCATATCCACAGCTGTAAAGGAATCTTTTTTCTCAAGATTACGGAATATGTTTCATCTCAAAAAGAAGAAAGACGAGAAGAAGACGACAACAACAGCAACAACAACAGCCACTACTATTACTAGTAACAATGGAGAGTTAGGGTATTTACGTACTTTGATGAGAATGGAGATGGGAAGGTGTCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGAAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAAGAAAAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATATCAATGGAGATGGAGTTCTTAGTTTTGATGAGTTTAAAATTATGATGACATGTTAGAAGAGTTCAAAGAGAAATATTTGTGTAATTACTAAATAGGATTCTTGTGATCAAATAATTCATTGAGATTTTTCATTTCATATTTGTAAAGTCCATATTTCATGAATTGGAGCATGTTTTACTTCTTTATTTGTTAAATTATTCAATGAACCAAGTATATAATTA</genome_strand>
        <mrna_strand>GTCTTTATTACATAGTTTTCTTTGTTAATTTCAAGTTCAACTCCATTTACTCATATTCAAACTTTCTTGAATAAAAGAAAAAGTAGTTCAAAGGTATATTTGTTTACTAGCATGTGTATCGCGTCAGTATCTAGTGAATGACCTTAACGATTGTTTTAGAAGTAGAGTTTTACTAGCCTGACGATTCAAAGCAAGGTCGAAATTCATCCCTCTTTTTAAAACTGATTAATTAACGACCCACCATATCCACAGCTGTAAAGGAATCTTTTTTCTCAAGATTACGGAATATGTTTCATCTCAAAAAGAAGAAAGACGAGAAGAAGACGACAACAACAGCAACAACAACAGCCACTACTATTACTAGTAACAATGGAGAGTTAGGGTATTTACGTACTTTGATGAGAATGGAGATGGGAAGGTGTCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGAAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAAGAAAAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATATCAATGGAGATGGAGTTCTTAGTTTTGATGAGTTTAAAATTATGATGACATGTTAGAAGAGTTCAAAGAGAAATATTTGTGTAATTACTAAATAGGATTCTTGTGATCAAATAATTCATTGAGATTTTTCATTTCATATTTGTAAAGTCCATATTTCATGAATTGGAGCATGTTTTACTTCTTTATTTGTTAAATTATTCAATGAACCAAGTATATAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718606" ref_strand="-" ref_description="SGN-E718606 [FC05AF10]">
      <seq>ttagtaattacacaaatatttctctttgaactcttctaacatgtcatcataattttaaactcatcaaaactaagaactccatctccattgatatcaaatctccttatcataaccttgcatttatcaatggaggttgactcgccgagtcgactcaacatcatcttcaagctcttaggagtaatgtatccttccatttcatacattccaaatgctcccatcaactcactctctttattcctctcttcctccattccttccattaacttcgtaaaatcctcaaaccctaacaacccgtccccatcagaatccgatagcctcaccaccatctccgcctcctccaccgttatctcacctcctaccgccttcatgcatctccttagctccattggtgatacctttccatttccattctcatcaaagtacgtaaataccctctctaactcaccactattgctatcactcaccgataaacgatcaatagtactagtactagtaatagttgttgttgttgttacactctcatgttccttcttaggagtattagccttctttagaaaaaaccttttacgtaatcttgagaaaaaagattccttttcagccatggaaacagaaactaactccatattagacatgctatagatgtaagtaagaaaatgagtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="64833" stop="68298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65133" g_stop="65314" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65315" i_stop="67528" i_length="2214">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67529" g_stop="68006" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="662" r_length="480" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E718606" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718606" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65133" e_stop="65314"/>
          <exon e_start="67529" e_stop="68006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAATTACACAAATATTTCTCTTTGAACTCTTCTAACATGTCATCATAATTTTAAACTCATCAAAACTAAGAACTCCATCTCCATTGATATCAAATCTCCTTATCATAACCTTGCATTTATCAATGGAGGTTGACTCGCCGAGTCGACTCAACATCATCTTCAAGCTCTTAGGAGTAATGTATCCTTCCATTTCATACATTCCAAATGCTCCCATCAACTCACTCTCTTTATTCCTCTTTTCTTCCATTCCTTCCATTAACTTCGTAAAATCCTCAAACCCTAACAACCCGTCCCCATCAGAATCCGATAGCCTCACCACCATCTCCGCCTCCTTCACCGTTATCTCACCTCCTACCGCCTTCATGCATCTCCTTAGCTCCATTGGTGACACCTTCCCATCTCCATTCTCATCAAAGTACGTAAATACCCTAACTCTCCATTGTTACTAGTAATAGTAGTGGCTGTTGTTGTTGCTGTTGTTGTCGTCTTCTTCTCGTCTTTCTTCTTTTTGAGATGAAACATATTCCGTAATCTTGAGAAAAAAGATTCCTTTACAGCTGTGGATATGGTGGGTCGTTAATTAATCAGTTTTAAAAAGAGGGATGAATTTCGACCTTGCTTTGAATCGTCAGGCTAGTAAAACTCTACTTCTAAAACAATCGTTAAGGTCATTCACTAGATACTGACGCGATACACATGCTAGTAAACAAATATACCTTTGAACTACTTTTTCTTTTATTCAAGAAAGTTTGAATATGAGTAAATGGAGTTGAACTTGAAATTAACAAAGAAAACTATGTAATAAAGACAAGAAGTCAAGGATATGGGAATGAAGGGAGAAGAATGGGCTATTTATAGTTAATGGGGTTGAAATTTGTATGGCCAATTGGTCTTGGTAGAAAAAAAAAGTAAACAGGAGACACGTTATAAAATATAATATAAAGTTTTTATAACATAATATAATTAATGACTACGTGTTTGATGTGTGTGTATGTATGTGTGTCTTTGGGGATTGAAATCTTTATATTATATTTTAAATATTGTGATGCCAAATTGACGTGTATCCTTAACTCTTATGACATCCTAAATAATGTCCTTTCTTTCCATTTCTTCTTGGAGTTCAATTTCTAATATGTGGGTTTTTAGAGTTTTTTATTTTTAATTTTTTGAAAAATAAGTGACTTTTATCTATTTTTTGATGTTTGGTTAGTAAATAGAAAATATAATTTTGAGAGCATTTAGTATAGTATAGGCAAATAATATGGCTAAGACTAAGACTTGAACTCAACATGAAACTCGACCCTGACCTTGTGTCGAGACCTCACATCTGGCCCAACCCCAACCTCAACTTGAAAATCTTACCCTTAGCTCTGATCCTGACTCTTGACTCAATCCCCTAACATGGATACCAAACCCGATCTTTAATCCACGACTCAAAATTTGGACATGATCCTCGACACGACTCAGAACTTGAGCCTTGGTTTGACCCTAACTAGAATCCAAGCTCACTCTTTGGTTTTGACTTTTGAATCAATACCTAATATCAATCACGACTCTAAACTCAAACCTTGTCTCGACCTCAACTAGGGACTCAACCCCCCACCCCCCGCCCGACCCTTATCATCCACTTTGAATCAATACTTGATCCCCCAACTTTGATATTGACCCAAGACTCAACCATAGCTTGTGACTCGATCCTTGAATCGAGACATGGATCTTGACCCTAGCTTGACCTCGACTAGGTTTCTAACCTATATTTTGATCCGCAATCTAATCTCGACAAGGGGCCCTATAAACGATACTCCTTTTAGGCCATATTAAGTGAACTATTGGAACATTCACATCCTTTTTTAAGAATACATTTCAGGACAAAATTCAAAGACTACTTTCCATTATCATACCTTTTGATTATTTTAAACTATTTATGAAAAAAATAAAAACTCCCAACAATTCTCTAGATATTTGAAAATTCACTTATTTTGAACTATGAAAAAAAATATCAAACAATTTACTTAATATGAAACCAGACTAGAGAAATACTTTTCAATATACACTATGAAAGAACAATAATAACATATTCACTTCTCCAAGTTAGTAAAAACCAAGGAATTGTTTCACAAATTTGAATCTATGAATGTATAAATCTCAACCAAAAACCATTTATATAATTACTAGAAACAAGAAGAAATAAAATAACAATAACAAGGCCAATAGGCCAAAAGAATTATGTACACAAATATCTCTTCTAACTTGTCATCATAACTTTGAACTCATCAAAGCTAAGAACTCCATCTCCATTAGTATCAAATCTCCTTATCATAACCTTGCATTTATCAATGGAGGTTGACTCGCCGAGTCGACTCAACATCATCTTCAAGCTCTTAGGAGTAATGTATCCTTCCATTTCATACATTCCAAATGCTCCCATCAACTCACTCTCTTTATTCCTCTCTTCCTCCATTCCTTCCATTAACTTCGTAAAATCCTCAAACCCTAACAACCCGTCCCCATCAGAATCCGATAGCCTCACCACCATCTCCGCCTCCTCCACCGTTATCTCACCTCCTACCGCCTTCATGCATCTCCTTAGCTCCATTGGTGATACCTTTCCATCTCCATTCTCATCAAAGTACGTAAATACCCTCTCTAACTCACCACTATTACTATCACTCACCGATAAACGATCAATAGTACTAGTACTAGTAATAGTTGTTGTTGTTGTTACACTCTCATGTTCCTTCTTAGGAGTATTAGCCTTCTTTAGAAAAAACCTTTTACGTAATCTTGAGAAAAAAGATCCCTTTTCAGCCATGGAAACAGTAACTAACACCATATTAGACATG--GTAGATGTAAGTAAGAAAATGAGTAAG</genome_strand>
        <mrna_strand>TTAGTAATTACACAAATATTTCTCTTTGAACTCTTCTAACATGTCATCATAATTTTAAACTCATCAAAACTAAGAACTCCATCTCCATTGATATCAAATCTCCTTATCATAACCTTGCATTTATCAATGGAGGTTGACTCGCCGAGTCGACTCAACATCATCTTCAAGCTCTTAGGAGTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCTTCCATTTCATACATTCCAAATGCTCCCATCAACTCACTCTCTTTATTCCTCTCTTCCTCCATTCCTTCCATTAACTTCGTAAAATCCTCAAACCCTAACAACCCGTCCCCATCAGAATCCGATAGCCTCACCACCATCTCCGCCTCCTCCACCGTTATCTCACCTCCTACCGCCTTCATGCATCTCCTTAGCTCCATTGGTGATACCTTTCCATTTCCATTCTCATCAAAGTACGTAAATACCCTCTCTAACTCACCACTATTGCTATCACTCACCGATAAACGATCAATAGTACTAGTACTAGTAATAGTTGTTGTTGTTGTTACACTCTCATGTTCCTTCTTAGGAGTATTAGCCTTCTTTAGAAAAAACCTTTTACGTAATCTTGAGAAAAAAGATTCCTTTTCAGCCATGGAAACAGAAACTAACTCCATATTAGACATGCTATAGATGTAAGTAAGAAAATGAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204392" ref_strand="+" ref_description="SGN-E204392 [cLEC-13-J5]">
      <seq>tttattacatagttttctttgttaatttcaagttcaactccatttactcatattcaaactttcttgaataaaagaaaaagtagttcaaaggtatatttgtttactagcatgtgtatcgcgtcagtatctagtgaatgaccttaacgattgttttagaagtagagttttactagcctgacgattcaaagcaaggtcgaaattcatccctctttttaaaactgattaattaacgacccaccatatccacagctgtaaaggaatcttttttctcaagattacggaatatgtttcatctcaaaaagaagaaagacgagaagaagacgacaacaacagcaacaacaacagccactactattactagtaacaatggagagttagggtatttacgtactttgatgagaatggagatgggaaggtgtcaccaatggagctaaggagatgcatgaaggcggtaggaggtgagataacggtgaaggaggcggagatggtggtgaggctatcggattctgatggggacgggttgttagggtttgaggattttacgaagttaatggaaggaatggaagaaaagaggaataaagagagtgagttgatgggagcatttggaatgtatgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="66242" stop="65024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65942" g_stop="65324" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E204392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65942" e_stop="65324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTACATAGTTTTCTTTGTTAATTTCAAGTTCAACTCCATTTACTCATATTCAAACTTTCTTGAATAAAAGAAAAAGTAGTTCAAAGGTATATTTGTTTACTAGCATGTGTATCGCGTCAGTATCTAGTGAATGACCTTAACGATTGTTTTAGAAGTAGAGTTTTACTAGCCTGACGATTCAAAGCAAGGTCGAAATTCATCCCTCTTTTTAAAACTGATTAATTAACGACCCACCATATCCACAGCTGTAAAGGAATCTTTTTTCTCAAGATTACGGAATATGTTTCATCTCAAAAAGAAGAAAGACGAGAAGAAGACGACAACAACAGCAACAACAACAGCCACTACTATTACTAGTAACAATGGAGAGTTAGGGTATTTACGTACTTTGATGAGAATGGAGATGGGAAGGTGTCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGAAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAAGAAAAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATG</genome_strand>
        <mrna_strand>TTTATTACATAGTTTTCTTTGTTAATTTCAAGTTCAACTCCATTTACTCATATTCAAACTTTCTTGAATAAAAGAAAAAGTAGTTCAAAGGTATATTTGTTTACTAGCATGTGTATCGCGTCAGTATCTAGTGAATGACCTTAACGATTGTTTTAGAAGTAGAGTTTTACTAGCCTGACGATTCAAAGCAAGGTCGAAATTCATCCCTCTTTTTAAAACTGATTAATTAACGACCCACCATATCCACAGCTGTAAAGGAATCTTTTTTCTCAAGATTACGGAATATGTTTCATCTCAAAAAGAAGAAAGACGAGAAGAAGACGACAACAACAGCAACAACAACAGCCACTACTATTACTAGTAACAATGGAGAGTTAGGGTATTTACGTACTTTGATGAGAATGGAGATGGGAAGGTGTCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGAAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAAGAAAAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375386" ref_strand="+" ref_description="SGN-E375386 [TUS-15-F22]">
      <seq>tttattacatagttttctttgttaatttcaagttcaactccatttactcatattcaaactttcttgaataaaagaaaaagtagttcaaaggtatatttgtttactagcatgtgtatcgcgtcagtatctagtgaatgaccttaacgattgttttagaagtagagttttactagcctgacgattcaaagcaaggtcgaaattcatccctctttttaaaactgattaattaacgacccaccatatccacagctgtaaaggaatcttttttctcaagattacggaatatgtttcatctcaaaaagaagaaagacgagaagaagacgacaacaacagcaacaacaacagccactactattactagtaacaatggagagttagggtatttacgtactttgatgagaatggagatgggaaggtgtcaccaatggagctaaggagatgcatgaaggcggtaggaggtgagataacggtgaaggaggcggagatggtggtgaggctatcggattctgatggggacggggttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="66242" stop="65117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65942" g_stop="65417" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E375386" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65942" e_stop="65417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTACATAGTTTTCTTTGTTAATTTCAAGTTCAACTCCATTTACTCATATTCAAACTTTCTTGAATAAAAGAAAAAGTAGTTCAAAGGTATATTTGTTTACTAGCATGTGTATCGCGTCAGTATCTAGTGAATGACCTTAACGATTGTTTTAGAAGTAGAGTTTTACTAGCCTGACGATTCAAAGCAAGGTCGAAATTCATCCCTCTTTTTAAAACTGATTAATTAACGACCCACCATATCCACAGCTGTAAAGGAATCTTTTTTCTCAAGATTACGGAATATGTTTCATCTCAAAAAGAAGAAAGACGAGAAGAAGACGACAACAACAGCAACAACAACAGCCACTACTATTACTAGTAACAATGGAGAGTTAGGGTATTTACGTACTTTGATGAGAATGGAGATGGGAAGGTGTCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGAAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGAC-GGGTTGTTA</genome_strand>
        <mrna_strand>TTTATTACATAGTTTTCTTTGTTAATTTCAAGTTCAACTCCATTTACTCATATTCAAACTTTCTTGAATAAAAGAAAAAGTAGTTCAAAGGTATATTTGTTTACTAGCATGTGTATCGCGTCAGTATCTAGTGAATGACCTTAACGATTGTTTTAGAAGTAGAGTTTTACTAGCCTGACGATTCAAAGCAAGGTCGAAATTCATCCCTCTTTTTAAAACTGATTAATTAACGACCCACCATATCCACAGCTGTAAAGGAATCTTTTTTCTCAAGATTACGGAATATGTTTCATCTCAAAAAGAAGAAAGACGAGAAGAAGACGACAACAACAGCAACAACAACAGCCACTACTATTACTAGTAACAATGGAGAGTTAGGGTATTTACGTACTTTGATGAGAATGGAGATGGGAAGGTGTCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGAAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGGTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208469" ref_strand="+" ref_description="SGN-E208469 [cLEC-39-A21]">
      <seq>tctttattacatagttttctttgttaatttcaagttcaactccatttactcatattcaaactttcttgaataaaagaaaaagtagttcaaaggtatatttgtttactagcatgtgtatcgcgtcagtatctagtgaatgaccttaacgattgttttagaagtagagttttactagcctgacgattcaaagcaaggtcgaaattcatccctctttttaaaactgattaattaacgacccaccatatccacagctgtaaaggaatcttttttctcaagattacggaatatgtttcatctcaaaaagaagaaagacgagaagaagacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="66244" stop="65319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65944" g_stop="65619" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E208469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65944" e_stop="65619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTATTACATAGTTTTCTTTGTTAATTTCAAGTTCAACTCCATTTACTCATATTCAAACTTTCTTGAATAAAAGAAAAAGTAGTTCAAAGGTATATTTGTTTACTAGCATGTGTATCGCGTCAGTATCTAGTGAATGACCTTAACGATTGTTTTAGAAGTAGAGTTTTACTAGCCTGACGATTCAAAGCAAGGTCGAAATTCATCCCTCTTTTTAAAACTGATTAATTAACGACCCACCATATCCACAGCTGTAAAGGAATCTTTTTTCTCAAGATTACGGAATATGTTTCATCTCAAAAAGAAGAAAGACGAGAAGAAGACGA</genome_strand>
        <mrna_strand>TCTTTATTACATAGTTTTCTTTGTTAATTTCAAGTTCAACTCCATTTACTCATATTCAAACTTTCTTGAATAAAAGAAAAAGTAGTTCAAAGGTATATTTGTTTACTAGCATGTGTATCGCGTCAGTATCTAGTGAATGACCTTAACGATTGTTTTAGAAGTAGAGTTTTACTAGCCTGACGATTCAAAGCAAGGTCGAAATTCATCCCTCTTTTTAAAACTGATTAATTAACGACCCACCATATCCACAGCTGTAAAGGAATCTTTTTTCTCAAGATTACGGAATATGTTTCATCTCAAAAAGAAGAAAGACGAGAAGAAGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376605" ref_strand="+" ref_description="SGN-E376605 [TUS-18-O2](-)">
      <seq>aaaagagtgagttgatgggagcatttggaatgtatgaaatggaaggatacattactcctaagagcttgaaaatgatgttgagtcgactcggcgagtcaacctccattgataaatgcaaggttatgataaggagatttgatactaatggagatggagtttttagctttgatgagttcaaagttatgatgacaagttaaaaaaaatatttgtgtacataatttttttggcctattggccttgttattgttattttattttttcttgtttttagtaattatataaatggtttttggttgagatttatacattcatagattcaaatttgtgaaacaattccttggtttttactaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="67879" stop="66928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67578" g_stop="67228" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="377"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E376605" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67578" e_stop="67228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATACTAATGGAGATGGAGTTCTTAGCTTTGATGAGTTCAAAGTTATGATGACAAGTTAGAAGAGATATTTGTGTACATAATTCTTTTGGCCTATTGGCCTTGTTATTGTTATTTTATTTCTTCTTGTTTCTAGTAATTATATAAATGGTTTTTGGTTGAGATTTATACATTCATAGATTCAAATTTGTGAAACAATTCCTTGGTTTTTACTAA</genome_strand>
        <mrna_strand>AAAAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAAATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATACTAATGGAGATGGAGTTTTTAGCTTTGATGAGTTCAAAGTTATGATGACAAGTTAAAAAAAATATTTGTGTACATAATTTTTTTGGCCTATTGGCCTTGTTATTGTTATTTTATTTTTTCTTGTTTTTAGTAATTATATAAATGGTTTTTGGTTGAGATTTATACATTCATAGATTCAAATTTGTGAAACAATTCCTTGGTTTTTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376606" ref_strand="+" ref_description="SGN-E376606 [TUS-18-O2]">
      <seq>aagagagtgagttgatgggagcatttggaatgtatgaaatggaaggatacattactcctaagagcttgaagatgatgttgagtcgactcggcgagtcaacctccattgataaatgcaaggttatgataaggagatttgatactaatggagatggagttcttagctttgatgagttcaaagttatgatgacaagttagaagagatatttgtgtacataattcttttggcctattggccttgttattgttattttatttcttcttgtttctagtaattatataaatggtttttggttgagatttatacattcatagattcaaatttgtgaaacaattccttggtttttactaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="67878" stop="66928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67578" g_stop="67228" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="378"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E376606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67578" e_stop="67228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATACTAATGGAGATGGAGTTCTTAGCTTTGATGAGTTCAAAGTTATGATGACAAGTTAGAAGAGATATTTGTGTACATAATTCTTTTGGCCTATTGGCCTTGTTATTGTTATTTTATTTCTTCTTGTTTCTAGTAATTATATAAATGGTTTTTGGTTGAGATTTATACATTCATAGATTCAAATTTGTGAAACAATTCCTTGGTTTTTACTAA</genome_strand>
        <mrna_strand>AAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATACTAATGGAGATGGAGTTCTTAGCTTTGATGAGTTCAAAGTTATGATGACAAGTTAGAAGAGATATTTGTGTACATAATTCTTTTGGCCTATTGGCCTTGTTATTGTTATTTTATTTCTTCTTGTTTCTAGTAATTATATAAATGGTTTTTGGTTGAGATTTATACATTCATAGATTCAAATTTGTGAAACAATTCCTTGGTTTTTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746702" ref_strand="+" ref_description="SGN-E746702 [GI|49425164]">
      <seq>acggccggggacaacaaaaaattatataactttcctaagatttctttgtttcaaagttaaaactcttatatcacttactcattttcttacttacatctaccatgtctaatatggtgttagttactgtttccatggctgaaaagggatcttttttctcaagattacgtaaaaggttttttctgaagaaggctaatactcctaagaaggaacatgagagtgtaacaacaacaacaactattactagtactagtactattgatcgtttatcggtgagtgatagtaatagtggtgagttagagagggtatttacgtactttgatgagaatggagatggaaaggtatcaccaatggagctaaggagatgcatgaaggcggtaggaggtgagataacggtggaggaggcggagatggtggtgaggctatcggattctgatggggacgggttgttagggtttgaggattttacgaagttaatggaaggaatggaggaagagaggaataaagagagtgagttgatgggagcatttggaatgtatgaaatggaaggatacattactcctaagagcttgaagatgatgttgagtcgactcggcgagtcaacctccattgataaatgcaaggttatgataaggagatttgatactaatggagatggagttcttagctttgatgagttcaaagttatgatgacaagttagaagagatatttgtgtacataatttttttggcctattggccttgttattgttattttatttctttttgtttctagtaattatataaatggtttttggttgacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="68369" stop="66980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68067" g_stop="67281" g_length="787"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="799" r_length="787" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="800" polyA_stop="829"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E746702" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68067" e_stop="67281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAATTATATAACTTTCCTAAGATTTCTTTGTTTCAAAGTTAAAACTCTTATATCACTTACTCATTTTCTTACTTACATCTACCATGTCTAATATGGTGTTAGTTACTGTTTCCATGGCTGAAAAGGGATCTTTTTTCTCAAGATTACGTAAAAGGTTTTTTCTAAAGAAGGCTAATACTCCTAAGAAGGAACATGAGAGTGTAACAACAACAACAACTATTACTAGTACTAGTACTATTGATCGTTTATCGGTGAGTGATAGTAATAGTGGTGAGTTAGAGAGGGTATTTACGTACTTTGATGAGAATGGAGATGGAAAGGTATCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGGAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATACTAATGGAGATGGAGTTCTTAGCTTTGATGAGTTCAAAGTTATGATGACAAGTTAGAAGAGATATTTGTGTACATAATTCTTTTGGCCTATTGGCCTTGTTATTGTTATTTTATTTCTTCTTGTTTCTAGTAATTATATAAATGGTTTTTGGTTGAG</genome_strand>
        <mrna_strand>AACAAAAAATTATATAACTTTCCTAAGATTTCTTTGTTTCAAAGTTAAAACTCTTATATCACTTACTCATTTTCTTACTTACATCTACCATGTCTAATATGGTGTTAGTTACTGTTTCCATGGCTGAAAAGGGATCTTTTTTCTCAAGATTACGTAAAAGGTTTTTTCTGAAGAAGGCTAATACTCCTAAGAAGGAACATGAGAGTGTAACAACAACAACAACTATTACTAGTACTAGTACTATTGATCGTTTATCGGTGAGTGATAGTAATAGTGGTGAGTTAGAGAGGGTATTTACGTACTTTGATGAGAATGGAGATGGAAAGGTATCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGGAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATACTAATGGAGATGGAGTTCTTAGCTTTGATGAGTTCAAAGTTATGATGACAAGTTAGAAGAGATATTTGTGTACATAATTTTTTTGGCCTATTGGCCTTGTTATTGTTATTTTATTTCTTTTTGTTTCTAGTAATTATATAAATGGTTTTTGGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720457" ref_strand="+" ref_description="SGN-E720457 [FC10DE03]">
      <seq>acttactcattttcttacttacatctatagcatgtctaatatggagttagtttctgtttccatggctgaaaaggaatcttttttctcaagattacgtaaaaggttttttctaaagaaggctaatactcctaagaaggaacatgagagtgtaacaacaacaacaactattactagtactagtactattgatcgtttatcggtgagtgatagcaatagtggtgagttagagagggtatttacgtactttgatgagaatggagatggaaaggtatcaccaatggagctaaggagatgcatgaaggcggtaggaggtgagataacggtggaggaggcggatatggtggtgaggctatcggattctgatggggacgggttgttagggtttgaggattttacgaacttaatggaaggaatggaggaagagaggaataaagagagtgagttgatgggagcatttggaatgtatgaaatggaaggatacattactcctaagagcttgaaaatgatgttgagtcaactcggcgagtcaacctccattgacaaatgcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="68298" stop="67159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68007" g_stop="67459" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E720457" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68007" e_stop="67459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACTCATTTTCTTACTTACATC--TACCATGTCTAATATGGTGTTAGTTACTGTTTCCATGGCTGAAAAGGGATCTTTTTTCTCAAGATTACGTAAAAGGTTTTTTCTAAAGAAGGCTAATACTCCTAAGAAGGAACATGAGAGTGTAACAACAACAACAACTATTACTAGTACTAGTACTATTGATCGTTTATCGGTGAGTGATAGTAATAGTGGTGAGTTAGAGAGGGTATTTACGTACTTTGATGAGAATGGAGATGGAAAGGTATCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGGAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGG</genome_strand>
        <mrna_strand>ACTTACTCATTTTCTTACTTACATCTATAGCATGTCTAATATGGAGTTAGTTTCTGTTTCCATGGCTGAAAAGGAATCTTTTTTCTCAAGATTACGTAAAAGGTTTTTTCTAAAGAAGGCTAATACTCCTAAGAAGGAACATGAGAGTGTAACAACAACAACAACTATTACTAGTACTAGTACTATTGATCGTTTATCGGTGAGTGATAGCAATAGTGGTGAGTTAGAGAGGGTATTTACGTACTTTGATGAGAATGGAGATGGAAAGGTATCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGGAGGAGGCGGATATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAACTTAATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAAATGATGTTGAGTCAACTCGGCGAGTCAACCTCCATTGACAAATGCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236077" ref_strand="+" ref_description="SGN-E236077 [cLED-16-J10]">
      <seq>tgtatcgaaaaaattgggatttacggatgacaatgatgatagcagcgcatcaccagaatcatcaaccagtttggatccgacccttttacgagaagctgagaatcttgaaagcagtatattatctggatttcagttagctacagcatctggccctttatgtgatgagccaatgtggggtttggcatttgttattgaagcttccatatctccattagctacgcaaccaaatgatagtgagaccggccctattccacagcctgaacaatatgggctcttacctggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="72339" stop="71455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72039" g_stop="71755" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E236077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72039" e_stop="71755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATCGAAAAAATTGGGATTTACGGATGACAATGATGATAGCAGCGCATCACCAGAATCATCAACCAGTTTGGATCCGACCCTTTTACGAGAAGCTGAGAATCTTGAAAGCAGTATATTATCTGGATTTCAGTTAGCTACAGCATCTGGCCCTTTATGTGATGAGCCAATGTGGGGTTTGGCATTTGTTATTGAAGCTTCCATATCTCCATTAGCTACGCAACCAAATGATAGTGAGACCGGCCCTATTCCACAGCCTGAACAATATGGGCTCTTACCTGGACA</genome_strand>
        <mrna_strand>TGTATCGAAAAAATTGGGATTTACGGATGACAATGATGATAGCAGCGCATCACCAGAATCATCAACCAGTTTGGATCCGACCCTTTTACGAGAAGCTGAGAATCTTGAAAGCAGTATATTATCTGGATTTCAGTTAGCTACAGCATCTGGCCCTTTATGTGATGAGCCAATGTGGGGTTTGGCATTTGTTATTGAAGCTTCCATATCTCCATTAGCTACGCAACCAAATGATAGTGAGACCGGCCCTATTCCACAGCCTGAACAATATGGGCTCTTACCTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329778" ref_strand="+" ref_description="SGN-E329778 [cTOD-3-E8]">
      <seq>gaagcttccaactgcattgacaaagctgcttgatgaaagttctgagttgcttgaagacatcattggaggtaaatctctacaggcttgtagaagctcggaaactctcagaggtaacgttgtagaagatgagaatccaattgaagcatttaagaaacgcctaatagatgctgtggagagcgacttttctactggatttgctgatacagaaaaggataggattgataaatgtaagaaaacatggcaaaaattcttaaaaaggatctgggctttagggcctagacaggtcggtcccaacattctcctcactccggatgtgaaaggaaagagcgccgatgtttctattcttataaagggttccccttatgtatcgaaaaaattgggatttacggatgacaatgatgatagcagcgcatcaccagaatcatcaaccagtttggatccgacccttttacgagaagctgagaatcttgaaagcagtatattatctggatttcagttagctacagcatctggccctttatgtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="72702" stop="71575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72402" g_stop="71875" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E329778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72402" e_stop="71875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTTCCAACTGCATTGACAAAGCTGCTTGATGAAAGTTCTGAGTTGCTTGAAGACATCATTGGAGGTAAATCTCTACAGGCTTGTAGAAGCTCGGAAACTCTCAGAGGTAACGTTGTAGAAGATGAGAATCCAATTGAAGCATTTAAGAAACGCCTAATAGATGCTGTGGAGAGCGACTTTTCTACTGGATTTGCTGATACAGAAAAGGATAGGATTGATAAATGTAAGAAAACATGGCAAAAATTCTTAAAAAGGATCTGGGCTTTAGGGCCTAGACAGGTCGGTCCCAACATTCTCCTCACTCCGGATGTGAAAGGAAAGAGCGCCGATGTTTCTATTCTTATAAAGGGTTCCCCTTATGTATCGAAAAAATTGGGATTTACGGATGACAATGATGATAGCAGCGCATCACCAGAATCATCAACCAGTTTGGATCCGACCCTTTTACGAGAAGCTGAGAATCTTGAAAGCAGTATATTATCTGGATTTCAGTTAGCTACAGCATCTGGCCCTTTATGTGATGA</genome_strand>
        <mrna_strand>GAAGCTTCCAACTGCATTGACAAAGCTGCTTGATGAAAGTTCTGAGTTGCTTGAAGACATCATTGGAGGTAAATCTCTACAGGCTTGTAGAAGCTCGGAAACTCTCAGAGGTAACGTTGTAGAAGATGAGAATCCAATTGAAGCATTTAAGAAACGCCTAATAGATGCTGTGGAGAGCGACTTTTCTACTGGATTTGCTGATACAGAAAAGGATAGGATTGATAAATGTAAGAAAACATGGCAAAAATTCTTAAAAAGGATCTGGGCTTTAGGGCCTAGACAGGTCGGTCCCAACATTCTCCTCACTCCGGATGTGAAAGGAAAGAGCGCCGATGTTTCTATTCTTATAAAGGGTTCCCCTTATGTATCGAAAAAATTGGGATTTACGGATGACAATGATGATAGCAGCGCATCACCAGAATCATCAACCAGTTTGGATCCGACCCTTTTACGAGAAGCTGAGAATCTTGAAAGCAGTATATTATCTGGATTTCAGTTAGCTACAGCATCTGGCCCTTTATGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551921" ref_strand="+" ref_description="SGN-E551921 [cTSB-2-E18]">
      <seq>aacaacaacagcaacatcaatgattctcccggtgattactatatctacatcgataaggattgttccaatgtaaccggcgacggcgaggatcatcggaaatggagatttggattgcagtagctcatctcaaacgaaacaacaacaacaacaagaatttcccgacgacggcgatgttcatgacggaggttcaccggaaacggcctgaaatggaaatatcaactaattcaaggactgatgagaaaaaaaaagtcagtatcatcaactgaaaatcaaataaaggcataattcaactgaattacgcatattaattccgctgcgtaaaattttatttttaccttataaaaattaaaaattatttttaataaattgttaaattcgatatatctttttgctattaaagatttataattatatagtttacctatataatttatacagcattttgtaagagactcaaaaagtttatatgtgatctttattttgtataaatacaagcttttttcatttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="77370" stop="76262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77070" g_stop="76563" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="538"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E551921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77070" e_stop="76563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACAGCAACATCAATGATTCTCCCGGTGATTACTATATCTACATCGATAAGGATTGTTCCAATGTAACCGGCGACGGCGAGGATCATCGGAAATGGAGATTTGGATTGCAGTAGCTCATCTCAAACGAAACAACAACAACAACAAGAATTTCCCGACGACGGCGATGTTCATGACGGAGGTTCACCGGAAACGGCCTGAAATGGAAATATCAACTAATTCAAGGACTGATGAGAAAAAAAAAGTCAGTATCATCAACTGAAAATCAAATAAAGGCATAATTCAACTGAATTACGCATATTAATTCCGCTGCGTAAAATTTTATTTTTACCTTATAAAAATTAAAAATTATTTTTAATAAATTGTTAAATTCGATATATCTTTTTGCTATTAAAGATTTATAATTATATAGTTTACCTATATAATTTATACAGCATTTTGTAAGAGACTCAAAAAGTTTATATGTGATCTTTATTTTGTATAAATACAAGCTTTTTTCATTTG</genome_strand>
        <mrna_strand>AACAACAACAGCAACATCAATGATTCTCCCGGTGATTACTATATCTACATCGATAAGGATTGTTCCAATGTAACCGGCGACGGCGAGGATCATCGGAAATGGAGATTTGGATTGCAGTAGCTCATCTCAAACGAAACAACAACAACAACAAGAATTTCCCGACGACGGCGATGTTCATGACGGAGGTTCACCGGAAACGGCCTGAAATGGAAATATCAACTAATTCAAGGACTGATGAGAAAAAAAAAGTCAGTATCATCAACTGAAAATCAAATAAAGGCATAATTCAACTGAATTACGCATATTAATTCCGCTGCGTAAAATTTTATTTTTACCTTATAAAAATTAAAAATTATTTTTAATAAATTGTTAAATTCGATATATCTTTTTGCTATTAAAGATTTATAATTATATAGTTTACCTATATAATTTATACAGCATTTTGTAAGAGACTCAAAAAGTTTATATGTGATCTTTATTTTGTATAAATACAAGCTTTTTTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552417" ref_strand="+" ref_description="SGN-E552417 [cTSB-3-N20]">
      <seq>aacaacaacagcaacatcaatgattctcccggtgattactatatctacatcgataaggattgttccaatgtaaccggcgacggcgaggatcatcggaaatggagatttggattgcagtagctcatctcaaacgaaacaacaacaacaacaagaatttcccgacgacggcgatgttcatgacggaggttcaccggaaacggcctgaaatggaaatatcaactaattcaaggactgatgagaaaaaaaaagtcagtatcatcaactgaaaatcaaataaaggcataattcaactgaattacgcatattaattccgctgcgtaaaattttatttttaccttataaaaattaaaaattatttttaataaattgttaaattcgatatatctttttgctattaaagatttataattatatagtttacctatataatttatacagcattttgtaagagactcaaaaagtttatatgtgatctttattttgtataaatacaagcttttttcatttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="77370" stop="76262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77070" g_stop="76563" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="538"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E552417" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77070" e_stop="76563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACAGCAACATCAATGATTCTCCCGGTGATTACTATATCTACATCGATAAGGATTGTTCCAATGTAACCGGCGACGGCGAGGATCATCGGAAATGGAGATTTGGATTGCAGTAGCTCATCTCAAACGAAACAACAACAACAACAAGAATTTCCCGACGACGGCGATGTTCATGACGGAGGTTCACCGGAAACGGCCTGAAATGGAAATATCAACTAATTCAAGGACTGATGAGAAAAAAAAAGTCAGTATCATCAACTGAAAATCAAATAAAGGCATAATTCAACTGAATTACGCATATTAATTCCGCTGCGTAAAATTTTATTTTTACCTTATAAAAATTAAAAATTATTTTTAATAAATTGTTAAATTCGATATATCTTTTTGCTATTAAAGATTTATAATTATATAGTTTACCTATATAATTTATACAGCATTTTGTAAGAGACTCAAAAAGTTTATATGTGATCTTTATTTTGTATAAATACAAGCTTTTTTCATTTG</genome_strand>
        <mrna_strand>AACAACAACAGCAACATCAATGATTCTCCCGGTGATTACTATATCTACATCGATAAGGATTGTTCCAATGTAACCGGCGACGGCGAGGATCATCGGAAATGGAGATTTGGATTGCAGTAGCTCATCTCAAACGAAACAACAACAACAACAAGAATTTCCCGACGACGGCGATGTTCATGACGGAGGTTCACCGGAAACGGCCTGAAATGGAAATATCAACTAATTCAAGGACTGATGAGAAAAAAAAAGTCAGTATCATCAACTGAAAATCAAATAAAGGCATAATTCAACTGAATTACGCATATTAATTCCGCTGCGTAAAATTTTATTTTTACCTTATAAAAATTAAAAATTATTTTTAATAAATTGTTAAATTCGATATATCTTTTTGCTATTAAAGATTTATAATTATATAGTTTACCTATATAATTTATACAGCATTTTGTAAGAGACTCAAAAAGTTTATATGTGATCTTTATTTTGTATAAATACAAGCTTTTTTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728027" ref_strand="+" ref_description="SGN-E728027 [LA16BH07]">
      <seq>caatttctctcccacttgtttacgaagagcgtttttagtgtgaatttggtaatgatcggccggcgattttttggtatgtgattcgtcggaatttaacggcgatgactgggcataatatcgtggtggagtcatcggcggtaaatgagagaaaagaactatcgagaacgacgacggcgattacgacgattacgacgagggaggatgagaaacgaggcggaggtggaaatcagcataaaaggataggagaaatggcgggagggacggcggcggagtgtgcgatggtatgttgttgttgtccgtgcacggtgctgcactttctcctacttgctctgtataaagttccgacgggactttgccggaaagcatggaggagtaagaaccagaagaaggtgttgaagaagaaaaacggcgctactaattctcctggagtttactacaccgacgatgataaggattatttcaatggcggcggtaacgtgaacagaggatcatcggaaacagccgactttgaaacggagatgtggcaccgattttacgatggcgctggatttggaaggagctcatctcataatgaattataagaagaactacaacggccacatcaatgattctcccggtgatactatatctacatcgataacgattgttcctatgtaaccggcgacggctaggatcatcggaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="77955" stop="76669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77655" g_stop="76969" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E728027" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77655" e_stop="76969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCTCTCCCACTTGTTTACGAAGAGCATTTTTAGTGTGAATTTGGTAATGATCGGCCGGCGATTTTTTTGTATGTGATTCGTCGGAGTTTAACGGCGATGACTATGCAGAATATCGTGGTGGAGTCATCGGCGGTAAATGAGAGAAAAGAACTATCGAGAACGACGACGGCGATTACGACGATTACGACGAGGGAGGATGAGAAACGAGGCGGAGGCGGAAATCAGCATAAAAGGATAGGAGAAGTGGCGGGAGGGACGGCGGCGGAGTGTGCGATGGTATGTTGTTGTTGTCCGTGCACGGTGCTGCACTTTCTCCTACTTGCTCTGTATAAAGTTCCGACGGGACTTTGCCGGAAAGCATGGAGGAGTAAGAAGCAGAAGAAGGTTTTGAAGAAGAAAAACAGCACTAATAATTCTCCTGGTGTTTACTACACCGACGATGATAAGGATTATTTCGATGGCGGCGGTAACGTAAACAGAGGATCATCGGAAACAGCCGAATTTGAAACGGAGATGTGGCACCGATTTTACGATGGCGCTGGATTTGGAAGGAGCTCATCTCAAAAGGAATTAGAAGAAGAACAACAACAGCAACATCAATGATTCTCCCGGTGATTACTATATCTACATCGATAAGGATTGTTCCAATGTAACCGGCGACGGCGAGGATCATCGGAAATGG</genome_strand>
        <mrna_strand>CAATTTCTCTCCCACTTGTTTACGAAGAGCGTTTTTAGTGTGAATTTGGTAATGATCGGCCGGCGATTTTTTGGTATGTGATTCGTCGGAATTTAACGGCGATGACTGGGCATAATATCGTGGTGGAGTCATCGGCGGTAAATGAGAGAAAAGAACTATCGAGAACGACGACGGCGATTACGACGATTACGACGAGGGAGGATGAGAAACGAGGCGGAGGTGGAAATCAGCATAAAAGGATAGGAGAAATGGCGGGAGGGACGGCGGCGGAGTGTGCGATGGTATGTTGTTGTTGTCCGTGCACGGTGCTGCACTTTCTCCTACTTGCTCTGTATAAAGTTCCGACGGGACTTTGCCGGAAAGCATGGAGGAGTAAGAACCAGAAGAAGGTGTTGAAGAAGAAAAACGGCGCTACTAATTCTCCTGGAGTTTACTACACCGACGATGATAAGGATTATTTCAATGGCGGCGGTAACGTGAACAGAGGATCATCGGAAACAGCCGACTTTGAAACGGAGATGTGGCACCGATTTTACGATGGCGCTGGATTTGGAAGGAGCTCATCTCATAATGAATTATAAGAAGAACTACAACGGCCACATCAATGATTCTCCCGGTGA-TACTATATCTACATCGATAACGATTGTTCCTATGTAACCGGCGACGGCTAGGATCATCGGAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311599" ref_strand="+" ref_description="SGN-E311599 [cLEZ-9-C23]">
      <seq>tgaagaagactctgtatccaagtctttcttaaggagacactgggaaggttacaaggagttttggggtgagagattctcctttttggataactattcaaggttcatcaaacgcgataagccattaccgtcgtggtctgaagctgatgtggaggagttcattgcttctgagccagttcatggaccaacactgaagactgctagggaagcagctaagtttggtgctgtaggaggcctacttggagctgtttcaactgcaggagttacatggaagtactcaaggagtctgcatggtactgcattgtcccttggagctggagctgtctttggctggacattcggacaggaagtcgccaaccaccggctgcagctatacaggatggatacaatggcttcacaggtgaagttcatggaatggtggcagaacaaagtcgaacgacagtcttaattttctctcttcctgtacgagatttgaagaaacaaaaactctggatttgctcgttagcgcgataacacagtcattttgttattggcaataaaaatttgttgacagtgttcaacttgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="82412" stop="78663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82112" g_stop="81926" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79901" g_stop="79799" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="290" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79798" i_stop="79236" i_length="563">
            <donor d_prob="0.290" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79235" g_stop="78966" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="560" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78965" i_stop="78749" i_length="217">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.283" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78748" g_stop="78740" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="569" r_length="9" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E311599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82112" e_stop="81926"/>
          <exon e_start="79901" e_stop="79799"/>
          <exon e_start="79235" e_stop="78966"/>
          <exon e_start="78748" e_stop="78740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACAGTATGCATTCATATCCAATTTGGGATAAAGATATCTTTTTTCTTAATATTTATGTTATTTGGGTGTTTTTCCTATTTGGGTTTTCATTGATTTGGCTATTGGTTTGATCTGTATGGTTTTTATGTGCATTTACAGTTGTTTGGGTGTTTTCCTATCTGAGTTTTCATTGATTTAGCTGTTGTTTTGATCTGTACGCTTATATCTTTATGCCCTTTTAGCTATGTGTGTGGTGATTTTGATTTGATGTTGAGGAGTTTATTGCTTTCTGACCCAGTTTATGGACCAATTGTATGCTTTCATTTCTGATTTGTTCTATCTTTTTGCTGAATAGTTTATGTGCATTTACAGTTATTTGGGTGTTTCCCTTATCTGGTTCTTTTCTGTGTGTGTACATTTTTTGAGATTTTCTCTGTATGTGTGTTGAAGCTGATGTTGAGGAGTTCATTGTTTTTGGTTTAGGAAGTTCTTTCATTTCCGATTGTTCTCTTTTTTTTCTAAATTGTATGTGCATTTACAGTTATCTGGGGTTTCCCGTACCTGTGTTTTCATTGATTTAACTGTTTCTTTATCCATTTGTTTCTGTTGTTATGCCCTTTTAGCTTTTAGATTGAAGATGCTCTTTGGTTTTGGATTGAGTCAATGCGTCGTGCTCGTTTCTTGGGTATGTGGCAATATTATTCTCTGTCTATGTCTGTTTGCTATTGTTTTAACATCTTATTCTTGGGGCGGGTAAGTTTTGGAGAAAATGGAGTTCTGTAGTCATTGTCCCTTTGAGCTCTTTTATTGCTTAGCAAAATTTTAGGACAGAAACTTAGGGCTGTAATATCGTTCGACGAGGAGAACTTGCTTTAGGATGTTGTTATGCATAGAGTGCCTCCATTACTATTGGCTGCTTGTTTGATTTTGGCAATGTTGGGGTCTTTGGTGTTTAATTGGACTTCCTTTAATTGCTTGAGTAACAAAATTATTTCTTTTTCATTCTCTAGAATTGCGACTTATACGTTCTGTCCAAGTTTGAACTTAATACGTGTTTCTTGAATCTTTGAAATGCGTTTTCCTATGATTAACTTTATCCTGACTGTTCTTGAATCGATTAGTTACATGATGATTAACTTGGCTCTGTTGCTTCACAATTTCTGCCAAATTTACTGTGTGAACTTTGCTTTCTTGTGTTCCGGTTACCTACTGGTTTAGGATATTGCCTCTACCGTGCCATGGTGGTCAATTATAATCCTTCATATTGCTTTGGGATCTAAGCTATCCGTATGTTTAGCCATTTGTTGCTTTGTATCTTTTGGCTCTTGATTTCTGTGTTTTGTGCTCTTTAAAGCTGATTCCAATAGCCTGAAGTTTTATGGAATTCTTTTTAATCAAGGAGAAGGAGTTTGTTGGGAATGAATTGTTGGAGGAACCTTGTAATACATGAAGGCACTGTATAAAATATTAGTACATCCTGCAATTGTGCTTCACATATCGATCCCGAATGTGTATATAAAATGGTTGCAGTGGGAAGGCTACATGCTTTATTCACTTTATTAAAAAATGGCTTTATGCTTTATCCAAACCTTATCTTTCTTAATTGGAGAAAGCTCTCCCTTGCAAGGGGCAAAAAGAAATGTGGAAGGCAACATGGAAGAGGGATTGTCTTTCCAAAGTCTATGTTTGGAGTTAATGGTGCAATGTCTTCACTTTTACCATCTATTTGGTTTGCTAAATTCTAGAAAGATTATTGAACTAGTCTGGTCTCTATCACTTATCTGGGCATAATGAGGACATCTACTTGTTTTTCTCTCGGATTGTCTATTTGCCTGAGTGCACAAAAGGACATGCCTAATTTTACTCGTGATATTGCTTTCGTAATGCTAAGAAATTGCACATGTGCTCTATTTTCCTTTTATTATAATCTGTCCCTAGAGCCCTGCTGATGCTGTTTCCTTTCAGTATCCCGTGTAACCATTATGTTCCTCCATTTTTTCCTTTTCGTTAGTGGAGGCTCATGAGCTTTTTGATACTATTCTTTCCAGCTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATGGTATGTTAGGTTTTTGACAACGACTCCCCTCCCTCCAATTTAAACCACGAGAATGCTACTACAACTGAGAGCCCAAAGCTCTAGGCATAGGTTCTTATAATGTTGCAATGTCCACTCTTGCTTTATTAATTGGTTTCCTCTCTCATCTATGTCCATGTTGATTCATACTCGTGAAGATTTGACATCCCTTATTGTTTTATATATATACATCTATACCTCATGATCAGAATCGACTGTCTACTAGTTCATTCATTAGGATTTTAAAAATGTTGTATTTTGATCAATTTCACTGAGTGTCATCTTTGCTTGATTCAATTAACCAACAACATACATAGTGTAGTCACAAAGTGAGGTATGGGGAGGGTAAAGTATTCGCAGTCCTTACCCTCACTTTGGAGGTAGAGCGACTTCCCAATTAACCATGCATGAAAACGTCTGTTGAGTTATTTTCCCGAATATAGTTTTGGAATGGCAACGAGAGAAAGGGGTACAACAAGTTAATCTTTTCCTAAGAATCAAGAATCTGGCAGAAGCCTTTAACATTTAGTTGCTTAATGTCATAGGTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAAATTTTTGTGCTCTAGGTTGTGCTTTTGACTATGAGATTTTGATGTTTGTTTGCCTACAAAATGGCTATAATGAAGTGCAATTTATGGCTTTGAAGTTTAAAGATGCAAGTCATTGGTCCTTCGGAAAAAACTTATCCGCACAGAGTGTTTACACTAAGCCAATACAATTTTCATTATTATGTGATTTAATAAAGTAACAGGAATAAAAA</genome_strand>
        <mrna_strand>TGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTT.........................................................................................................................................................................................................................GAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552048" ref_strand="+" ref_description="SGN-E552048 [cTSB-2-K3]">
      <seq>aagccatggctgaagaagactctgtatccaagtctttcttaaggagacactgggaaggttacaaggagttttggggtgagagattctcctttttggataactattcaaggttcatcaaacgcgataagccattaccgtcgtggtctgaagctgatgtggaggagttcattgcttctgagccagttcatggaccaacactgaagactgctagggaagcagctaagtttggtgctgtaggaggcctacttggagctgtttcaactgcaggagttacatggaagtactcaaggagtctgcatggtactgcattgtcccttggagctggagctgtctttggctggacattcggacaggaagtcgccaaccaccggctgcagctatacaggatggatacaatggcttcacaggtgaagttcatggaatggtggcagaacaaagtcgaacgacagtcttaattttctctcttcctgtacgagatttgaagaaacaaaaactctggatttgctcgttagcgcgataacacagtcattttgttattggcaataaaaatttgttgacagtgttcaacttgtatctggtgaattgaaatttttgtgctctaggttgtgcttttgactatgagattttgatgtttgtttgcctacaaaatggctataatgaagtgcaatttatggctaaaaaaannnaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="82422" stop="78560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82122" g_stop="81926" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79901" g_stop="79799" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="300" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79798" i_stop="79236" i_length="563">
            <donor d_prob="0.290" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79235" g_stop="78845" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="691" r_length="391" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78844" i_stop="78749" i_length="96">
            <donor d_prob="0.956" d_score="0.80"/>
            <acceptor a_prob="0.283" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78748" g_stop="78741" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="699" r_length="8" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E552048" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82122" e_stop="81926"/>
          <exon e_start="79901" e_stop="79799"/>
          <exon e_start="79235" e_stop="78845"/>
          <exon e_start="78748" e_stop="78741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCATGGCTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACAGTATGCATTCATATCCAATTTGGGATAAAGATATCTTTTTTCTTAATATTTATGTTATTTGGGTGTTTTTCCTATTTGGGTTTTCATTGATTTGGCTATTGGTTTGATCTGTATGGTTTTTATGTGCATTTACAGTTGTTTGGGTGTTTTCCTATCTGAGTTTTCATTGATTTAGCTGTTGTTTTGATCTGTACGCTTATATCTTTATGCCCTTTTAGCTATGTGTGTGGTGATTTTGATTTGATGTTGAGGAGTTTATTGCTTTCTGACCCAGTTTATGGACCAATTGTATGCTTTCATTTCTGATTTGTTCTATCTTTTTGCTGAATAGTTTATGTGCATTTACAGTTATTTGGGTGTTTCCCTTATCTGGTTCTTTTCTGTGTGTGTACATTTTTTGAGATTTTCTCTGTATGTGTGTTGAAGCTGATGTTGAGGAGTTCATTGTTTTTGGTTTAGGAAGTTCTTTCATTTCCGATTGTTCTCTTTTTTTTCTAAATTGTATGTGCATTTACAGTTATCTGGGGTTTCCCGTACCTGTGTTTTCATTGATTTAACTGTTTCTTTATCCATTTGTTTCTGTTGTTATGCCCTTTTAGCTTTTAGATTGAAGATGCTCTTTGGTTTTGGATTGAGTCAATGCGTCGTGCTCGTTTCTTGGGTATGTGGCAATATTATTCTCTGTCTATGTCTGTTTGCTATTGTTTTAACATCTTATTCTTGGGGCGGGTAAGTTTTGGAGAAAATGGAGTTCTGTAGTCATTGTCCCTTTGAGCTCTTTTATTGCTTAGCAAAATTTTAGGACAGAAACTTAGGGCTGTAATATCGTTCGACGAGGAGAACTTGCTTTAGGATGTTGTTATGCATAGAGTGCCTCCATTACTATTGGCTGCTTGTTTGATTTTGGCAATGTTGGGGTCTTTGGTGTTTAATTGGACTTCCTTTAATTGCTTGAGTAACAAAATTATTTCTTTTTCATTCTCTAGAATTGCGACTTATACGTTCTGTCCAAGTTTGAACTTAATACGTGTTTCTTGAATCTTTGAAATGCGTTTTCCTATGATTAACTTTATCCTGACTGTTCTTGAATCGATTAGTTACATGATGATTAACTTGGCTCTGTTGCTTCACAATTTCTGCCAAATTTACTGTGTGAACTTTGCTTTCTTGTGTTCCGGTTACCTACTGGTTTAGGATATTGCCTCTACCGTGCCATGGTGGTCAATTATAATCCTTCATATTGCTTTGGGATCTAAGCTATCCGTATGTTTAGCCATTTGTTGCTTTGTATCTTTTGGCTCTTGATTTCTGTGTTTTGTGCTCTTTAAAGCTGATTCCAATAGCCTGAAGTTTTATGGAATTCTTTTTAATCAAGGAGAAGGAGTTTGTTGGGAATGAATTGTTGGAGGAACCTTGTAATACATGAAGGCACTGTATAAAATATTAGTACATCCTGCAATTGTGCTTCACATATCGATCCCGAATGTGTATATAAAATGGTTGCAGTGGGAAGGCTACATGCTTTATTCACTTTATTAAAAAATGGCTTTATGCTTTATCCAAACCTTATCTTTCTTAATTGGAGAAAGCTCTCCCTTGCAAGGGGCAAAAAGAAATGTGGAAGGCAACATGGAAGAGGGATTGTCTTTCCAAAGTCTATGTTTGGAGTTAATGGTGCAATGTCTTCACTTTTACCATCTATTTGGTTTGCTAAATTCTAGAAAGATTATTGAACTAGTCTGGTCTCTATCACTTATCTGGGCATAATGAGGACATCTACTTGTTTTTCTCTCGGATTGTCTATTTGCCTGAGTGCACAAAAGGACATGCCTAATTTTACTCGTGATATTGCTTTCGTAATGCTAAGAAATTGCACATGTGCTCTATTTTCCTTTTATTATAATCTGTCCCTAGAGCCCTGCTGATGCTGTTTCCTTTCAGTATCCCGTGTAACCATTATGTTCCTCCATTTTTTCCTTTTCGTTAGTGGAGGCTCATGAGCTTTTTGATACTATTCTTTCCAGCTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATGGTATGTTAGGTTTTTGACAACGACTCCCCTCCCTCCAATTTAAACCACGAGAATGCTACTACAACTGAGAGCCCAAAGCTCTAGGCATAGGTTCTTATAATGTTGCAATGTCCACTCTTGCTTTATTAATTGGTTTCCTCTCTCATCTATGTCCATGTTGATTCATACTCGTGAAGATTTGACATCCCTTATTGTTTTATATATATACATCTATACCTCATGATCAGAATCGACTGTCTACTAGTTCATTCATTAGGATTTTAAAAATGTTGTATTTTGATCAATTTCACTGAGTGTCATCTTTGCTTGATTCAATTAACCAACAACATACATAGTGTAGTCACAAAGTGAGGTATGGGGAGGGTAAAGTATTCGCAGTCCTTACCCTCACTTTGGAGGTAGAGCGACTTCCCAATTAACCATGCATGAAAACGTCTGTTGAGTTATTTTCCCGAATATAGTTTTGGAATGGCAACGAGAGAAAGGGGTACAACAAGTTAATCTTTTCCTAAGAATCAAGAATCTGGCAGAAGCCTTTAACATTTAGTTGCTTAATGTCATAGGTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAAATTTTTGTGCTCTAGGTTGTGCTTTTGACTATGAGATTTTGATGTTTGTTTGCCTACAAAATGGCTATAATGAAGTGCAATTTATGGCTTTGAAGTTTAAAGATGCAAGTCATTGGTCCTTCGGAAAAAACTTATCCGCACAGAGTGTTTACACTAAGCCAATACAATTTTCATTATTATGTGATTTAATAAAGTAACAGGAATAAAA</genome_strand>
        <mrna_strand>AAGCCATGGCTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAAATTTTTGTGCTCTAGGTTGTGCTTTTGACTATGAGATTTTGATGTTTGTTTGCCTACAAAATGGCTATAATGAAGTGCAATTTATGGCTAAAAAAANNNAAAAA................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718397" ref_strand="+" ref_description="SGN-E718397 [FC04CB10]">
      <seq>gggcgattggcggccaatcggccgaattgaaaagccatggctgaagaagactctgtatccaagtctttcttaaggagacactgggaaggttacaaggagttctggggtgagagattctcctttttggataactattcaaggttcatcaaacgcgataagccattaccgtcgtggtctgaagctgatgtggaggagttcattgcttctgagccagttcatggaccaacactgaagactgctagggaagcagctaagtttggtgctgtaggaggcctacttggagctgtttcaactgcaggagttacatggaagtactcaaggagtctgcatggtactgcattgtcccttggagctggagctgtctttggctggacattcggacaggaagtcgccaaccaccggctgcagctatacaggatggatacaatggcttcacaggtgaagttcatggaatggtggcagaacaaagtcgaacgacagtcttaattttctccttcctgtacgagatttgaagaaacaaaactctggatttgctcgttagcgcgataacacagtcattttgttatcggcaataaaaatttgttgacagtgttcaacttgtatctggtgaattgaaatttttgtgctctaggttgtgcttttgactatgagattttgatgtttgtttgcctacaaaatggctataatgaagtgcaatttatggctttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="82423" stop="78555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82124" g_stop="81926" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="228" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79901" g_stop="79799" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79798" i_stop="79236" i_length="563">
            <donor d_prob="0.290" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79235" g_stop="78845" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="720" r_length="389" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="748"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E718397" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82124" e_stop="81926"/>
          <exon e_start="79901" e_stop="79799"/>
          <exon e_start="79235" e_stop="78845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCCATGGCTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACAGTATGCATTCATATCCAATTTGGGATAAAGATATCTTTTTTCTTAATATTTATGTTATTTGGGTGTTTTTCCTATTTGGGTTTTCATTGATTTGGCTATTGGTTTGATCTGTATGGTTTTTATGTGCATTTACAGTTGTTTGGGTGTTTTCCTATCTGAGTTTTCATTGATTTAGCTGTTGTTTTGATCTGTACGCTTATATCTTTATGCCCTTTTAGCTATGTGTGTGGTGATTTTGATTTGATGTTGAGGAGTTTATTGCTTTCTGACCCAGTTTATGGACCAATTGTATGCTTTCATTTCTGATTTGTTCTATCTTTTTGCTGAATAGTTTATGTGCATTTACAGTTATTTGGGTGTTTCCCTTATCTGGTTCTTTTCTGTGTGTGTACATTTTTTGAGATTTTCTCTGTATGTGTGTTGAAGCTGATGTTGAGGAGTTCATTGTTTTTGGTTTAGGAAGTTCTTTCATTTCCGATTGTTCTCTTTTTTTTCTAAATTGTATGTGCATTTACAGTTATCTGGGGTTTCCCGTACCTGTGTTTTCATTGATTTAACTGTTTCTTTATCCATTTGTTTCTGTTGTTATGCCCTTTTAGCTTTTAGATTGAAGATGCTCTTTGGTTTTGGATTGAGTCAATGCGTCGTGCTCGTTTCTTGGGTATGTGGCAATATTATTCTCTGTCTATGTCTGTTTGCTATTGTTTTAACATCTTATTCTTGGGGCGGGTAAGTTTTGGAGAAAATGGAGTTCTGTAGTCATTGTCCCTTTGAGCTCTTTTATTGCTTAGCAAAATTTTAGGACAGAAACTTAGGGCTGTAATATCGTTCGACGAGGAGAACTTGCTTTAGGATGTTGTTATGCATAGAGTGCCTCCATTACTATTGGCTGCTTGTTTGATTTTGGCAATGTTGGGGTCTTTGGTGTTTAATTGGACTTCCTTTAATTGCTTGAGTAACAAAATTATTTCTTTTTCATTCTCTAGAATTGCGACTTATACGTTCTGTCCAAGTTTGAACTTAATACGTGTTTCTTGAATCTTTGAAATGCGTTTTCCTATGATTAACTTTATCCTGACTGTTCTTGAATCGATTAGTTACATGATGATTAACTTGGCTCTGTTGCTTCACAATTTCTGCCAAATTTACTGTGTGAACTTTGCTTTCTTGTGTTCCGGTTACCTACTGGTTTAGGATATTGCCTCTACCGTGCCATGGTGGTCAATTATAATCCTTCATATTGCTTTGGGATCTAAGCTATCCGTATGTTTAGCCATTTGTTGCTTTGTATCTTTTGGCTCTTGATTTCTGTGTTTTGTGCTCTTTAAAGCTGATTCCAATAGCCTGAAGTTTTATGGAATTCTTTTTAATCAAGGAGAAGGAGTTTGTTGGGAATGAATTGTTGGAGGAACCTTGTAATACATGAAGGCACTGTATAAAATATTAGTACATCCTGCAATTGTGCTTCACATATCGATCCCGAATGTGTATATAAAATGGTTGCAGTGGGAAGGCTACATGCTTTATTCACTTTATTAAAAAATGGCTTTATGCTTTATCCAAACCTTATCTTTCTTAATTGGAGAAAGCTCTCCCTTGCAAGGGGCAAAAAGAAATGTGGAAGGCAACATGGAAGAGGGATTGTCTTTCCAAAGTCTATGTTTGGAGTTAATGGTGCAATGTCTTCACTTTTACCATCTATTTGGTTTGCTAAATTCTAGAAAGATTATTGAACTAGTCTGGTCTCTATCACTTATCTGGGCATAATGAGGACATCTACTTGTTTTTCTCTCGGATTGTCTATTTGCCTGAGTGCACAAAAGGACATGCCTAATTTTACTCGTGATATTGCTTTCGTAATGCTAAGAAATTGCACATGTGCTCTATTTTCCTTTTATTATAATCTGTCCCTAGAGCCCTGCTGATGCTGTTTCCTTTCAGTATCCCGTGTAACCATTATGTTCCTCCATTTTTTCCTTTTCGTTAGTGGAGGCTCATGAGCTTTTTGATACTATTCTTTCCAGCTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATGGTATGTTAGGTTTTTGACAACGACTCCCCTCCCTCCAATTTAAACCACGAGAATGCTACTACAACTGAGAGCCCAAAGCTCTAGGCATAGGTTCTTATAATGTTGCAATGTCCACTCTTGCTTTATTAATTGGTTTCCTCTCTCATCTATGTCCATGTTGATTCATACTCGTGAAGATTTGACATCCCTTATTGTTTTATATATATACATCTATACCTCATGATCAGAATCGACTGTCTACTAGTTCATTCATTAGGATTTTAAAAATGTTGTATTTTGATCAATTTCACTGAGTGTCATCTTTGCTTGATTCAATTAACCAACAACATACATAGTGTAGTCACAAAGTGAGGTATGGGGAGGGTAAAGTATTCGCAGTCCTTACCCTCACTTTGGAGGTAGAGCGACTTCCCAATTAACCATGCATGAAAACGTCTGTTGAGTTATTTTCCCGAATATAGTTTTGGAATGGCAACGAGAGAAAGGGGTACAACAAGTTAATCTTTTCCTAAGAATCAAGAATCTGGCAGAAGCCTTTAACATTTAGTTGCTTAATGTCATAGGTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAAATTTTTGTGCTCTAGGTTGTGCTTTTGACTATGAGATTTTGATGTTTGTTTGCCTACAAAATGGCTATAATGAAGTGCAATTTATGGCTTTGAAGTTTAAAGAT</genome_strand>
        <mrna_strand>AAAAGCCATGGCTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTCTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTC-CTTCCTGTACGAGATTTGAAGAAAC-AAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATCGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAAATTTTTGTGCTCTAGGTTGTGCTTTTGACTATGAGATTTTGATGTTTGTTTGCCTACAAAATGGCTATAATGAAGTGCAATTTATGGCTTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714880" ref_strand="+" ref_description="SGN-E714880 [FB12CG11]">
      <seq>catggctgaagaagactctgtatccaagtctttcttaaggagacactgggaaggttacaaggagttctggggtgagagattctcctttttggataactattcaaggttcatcaaacgcgataagccattaccgtcgtggtctgaagctgatgtggaggagttcattgcttctgagccagttcatggaccaacactgaagactgctagggaagcagctaagtttggtgctgtaggaggcctacttggagctgtttcaactgcaggagttacatggaagtactcaaggagtctgcatggtactgcattgtcccttggagctggagctgtctttggctggacattcggacaggaagtcgccaaccaccggctgcagctatacaggatggatacaatggcttcacaggtgaagttcatggaatggtggcagaacaaagtcgaacgacagtcttaattttctccttcctgtacgagatttgaagaaacaaaactctggatttgctcgttagcgcgataacacagtcattttgttatcggcaataaaaatttgttgacagtgttcaacttgtatctggtgaattgaaatttttgtgctctaggttgtgcttttgactatgagattttgatgtttgtttgcctacaaaatggctataatgaagtgcaatttatggctttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="82418" stop="78555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82118" g_stop="81926" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79901" g_stop="79799" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="296" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79798" i_stop="79236" i_length="563">
            <donor d_prob="0.290" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79235" g_stop="78845" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="685" r_length="389" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E714880" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82118" e_stop="81926"/>
          <exon e_start="79901" e_stop="79799"/>
          <exon e_start="79235" e_stop="78845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACAGTATGCATTCATATCCAATTTGGGATAAAGATATCTTTTTTCTTAATATTTATGTTATTTGGGTGTTTTTCCTATTTGGGTTTTCATTGATTTGGCTATTGGTTTGATCTGTATGGTTTTTATGTGCATTTACAGTTGTTTGGGTGTTTTCCTATCTGAGTTTTCATTGATTTAGCTGTTGTTTTGATCTGTACGCTTATATCTTTATGCCCTTTTAGCTATGTGTGTGGTGATTTTGATTTGATGTTGAGGAGTTTATTGCTTTCTGACCCAGTTTATGGACCAATTGTATGCTTTCATTTCTGATTTGTTCTATCTTTTTGCTGAATAGTTTATGTGCATTTACAGTTATTTGGGTGTTTCCCTTATCTGGTTCTTTTCTGTGTGTGTACATTTTTTGAGATTTTCTCTGTATGTGTGTTGAAGCTGATGTTGAGGAGTTCATTGTTTTTGGTTTAGGAAGTTCTTTCATTTCCGATTGTTCTCTTTTTTTTCTAAATTGTATGTGCATTTACAGTTATCTGGGGTTTCCCGTACCTGTGTTTTCATTGATTTAACTGTTTCTTTATCCATTTGTTTCTGTTGTTATGCCCTTTTAGCTTTTAGATTGAAGATGCTCTTTGGTTTTGGATTGAGTCAATGCGTCGTGCTCGTTTCTTGGGTATGTGGCAATATTATTCTCTGTCTATGTCTGTTTGCTATTGTTTTAACATCTTATTCTTGGGGCGGGTAAGTTTTGGAGAAAATGGAGTTCTGTAGTCATTGTCCCTTTGAGCTCTTTTATTGCTTAGCAAAATTTTAGGACAGAAACTTAGGGCTGTAATATCGTTCGACGAGGAGAACTTGCTTTAGGATGTTGTTATGCATAGAGTGCCTCCATTACTATTGGCTGCTTGTTTGATTTTGGCAATGTTGGGGTCTTTGGTGTTTAATTGGACTTCCTTTAATTGCTTGAGTAACAAAATTATTTCTTTTTCATTCTCTAGAATTGCGACTTATACGTTCTGTCCAAGTTTGAACTTAATACGTGTTTCTTGAATCTTTGAAATGCGTTTTCCTATGATTAACTTTATCCTGACTGTTCTTGAATCGATTAGTTACATGATGATTAACTTGGCTCTGTTGCTTCACAATTTCTGCCAAATTTACTGTGTGAACTTTGCTTTCTTGTGTTCCGGTTACCTACTGGTTTAGGATATTGCCTCTACCGTGCCATGGTGGTCAATTATAATCCTTCATATTGCTTTGGGATCTAAGCTATCCGTATGTTTAGCCATTTGTTGCTTTGTATCTTTTGGCTCTTGATTTCTGTGTTTTGTGCTCTTTAAAGCTGATTCCAATAGCCTGAAGTTTTATGGAATTCTTTTTAATCAAGGAGAAGGAGTTTGTTGGGAATGAATTGTTGGAGGAACCTTGTAATACATGAAGGCACTGTATAAAATATTAGTACATCCTGCAATTGTGCTTCACATATCGATCCCGAATGTGTATATAAAATGGTTGCAGTGGGAAGGCTACATGCTTTATTCACTTTATTAAAAAATGGCTTTATGCTTTATCCAAACCTTATCTTTCTTAATTGGAGAAAGCTCTCCCTTGCAAGGGGCAAAAAGAAATGTGGAAGGCAACATGGAAGAGGGATTGTCTTTCCAAAGTCTATGTTTGGAGTTAATGGTGCAATGTCTTCACTTTTACCATCTATTTGGTTTGCTAAATTCTAGAAAGATTATTGAACTAGTCTGGTCTCTATCACTTATCTGGGCATAATGAGGACATCTACTTGTTTTTCTCTCGGATTGTCTATTTGCCTGAGTGCACAAAAGGACATGCCTAATTTTACTCGTGATATTGCTTTCGTAATGCTAAGAAATTGCACATGTGCTCTATTTTCCTTTTATTATAATCTGTCCCTAGAGCCCTGCTGATGCTGTTTCCTTTCAGTATCCCGTGTAACCATTATGTTCCTCCATTTTTTCCTTTTCGTTAGTGGAGGCTCATGAGCTTTTTGATACTATTCTTTCCAGCTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATGGTATGTTAGGTTTTTGACAACGACTCCCCTCCCTCCAATTTAAACCACGAGAATGCTACTACAACTGAGAGCCCAAAGCTCTAGGCATAGGTTCTTATAATGTTGCAATGTCCACTCTTGCTTTATTAATTGGTTTCCTCTCTCATCTATGTCCATGTTGATTCATACTCGTGAAGATTTGACATCCCTTATTGTTTTATATATATACATCTATACCTCATGATCAGAATCGACTGTCTACTAGTTCATTCATTAGGATTTTAAAAATGTTGTATTTTGATCAATTTCACTGAGTGTCATCTTTGCTTGATTCAATTAACCAACAACATACATAGTGTAGTCACAAAGTGAGGTATGGGGAGGGTAAAGTATTCGCAGTCCTTACCCTCACTTTGGAGGTAGAGCGACTTCCCAATTAACCATGCATGAAAACGTCTGTTGAGTTATTTTCCCGAATATAGTTTTGGAATGGCAACGAGAGAAAGGGGTACAACAAGTTAATCTTTTCCTAAGAATCAAGAATCTGGCAGAAGCCTTTAACATTTAGTTGCTTAATGTCATAGGTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAAATTTTTGTGCTCTAGGTTGTGCTTTTGACTATGAGATTTTGATGTTTGTTTGCCTACAAAATGGCTATAATGAAGTGCAATTTATGGCTTTGAAGTTTAAAGAT</genome_strand>
        <mrna_strand>CATGGCTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTCTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTC-CTTCCTGTACGAGATTTGAAGAAAC-AAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATCGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAAATTTTTGTGCTCTAGGTTGTGCTTTTGACTATGAGATTTTGATGTTTGTTTGCCTACAAAATGGCTATAATGAAGTGCAATTTATGGCTTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319066" ref_strand="+" ref_description="SGN-E319066 [cTOB-14-N21]">
      <seq>ctgaagaagactctgtatccaagtctttcttaaggagacactgggaaggttacaaggagttttggggtgagagattctcctttttggataactattcaaggttcatcaaacgcgataagccattaccgtcgtggtctgaagctgatgtggaggagttcattgcttctgagccagttcatggaccaacactgaagactgctagggaagcagctaagtttggtgctgtaggaggcctacttggagctgtttcaactgcaggagttacatggaagtactcaaggagtctgcatggtactgcattgtcccttggagctggagctgtctttggctggacattcggacaggaagtcgccaaccaccggctgcagctatacaggatggatacaatggcttcacaggtgaagttcatggaatggtggcagaacaaagtcgaacgacagtcttaattttctctcttcctgtacgagatttgaagaaacaaaaactctggatttgctcgttagcgcgataacacagtcattttgttattggcaataaaaatttgttgacagtgttcaacttgtatctggtgaattgaaatttttgtgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="82413" stop="78636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82113" g_stop="81926" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79901" g_stop="79799" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="291" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79798" i_stop="79236" i_length="563">
            <donor d_prob="0.290" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79235" g_stop="78936" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="591" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E319066" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82113" e_stop="81926"/>
          <exon e_start="79901" e_stop="79799"/>
          <exon e_start="79235" e_stop="78936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACAGTATGCATTCATATCCAATTTGGGATAAAGATATCTTTTTTCTTAATATTTATGTTATTTGGGTGTTTTTCCTATTTGGGTTTTCATTGATTTGGCTATTGGTTTGATCTGTATGGTTTTTATGTGCATTTACAGTTGTTTGGGTGTTTTCCTATCTGAGTTTTCATTGATTTAGCTGTTGTTTTGATCTGTACGCTTATATCTTTATGCCCTTTTAGCTATGTGTGTGGTGATTTTGATTTGATGTTGAGGAGTTTATTGCTTTCTGACCCAGTTTATGGACCAATTGTATGCTTTCATTTCTGATTTGTTCTATCTTTTTGCTGAATAGTTTATGTGCATTTACAGTTATTTGGGTGTTTCCCTTATCTGGTTCTTTTCTGTGTGTGTACATTTTTTGAGATTTTCTCTGTATGTGTGTTGAAGCTGATGTTGAGGAGTTCATTGTTTTTGGTTTAGGAAGTTCTTTCATTTCCGATTGTTCTCTTTTTTTTCTAAATTGTATGTGCATTTACAGTTATCTGGGGTTTCCCGTACCTGTGTTTTCATTGATTTAACTGTTTCTTTATCCATTTGTTTCTGTTGTTATGCCCTTTTAGCTTTTAGATTGAAGATGCTCTTTGGTTTTGGATTGAGTCAATGCGTCGTGCTCGTTTCTTGGGTATGTGGCAATATTATTCTCTGTCTATGTCTGTTTGCTATTGTTTTAACATCTTATTCTTGGGGCGGGTAAGTTTTGGAGAAAATGGAGTTCTGTAGTCATTGTCCCTTTGAGCTCTTTTATTGCTTAGCAAAATTTTAGGACAGAAACTTAGGGCTGTAATATCGTTCGACGAGGAGAACTTGCTTTAGGATGTTGTTATGCATAGAGTGCCTCCATTACTATTGGCTGCTTGTTTGATTTTGGCAATGTTGGGGTCTTTGGTGTTTAATTGGACTTCCTTTAATTGCTTGAGTAACAAAATTATTTCTTTTTCATTCTCTAGAATTGCGACTTATACGTTCTGTCCAAGTTTGAACTTAATACGTGTTTCTTGAATCTTTGAAATGCGTTTTCCTATGATTAACTTTATCCTGACTGTTCTTGAATCGATTAGTTACATGATGATTAACTTGGCTCTGTTGCTTCACAATTTCTGCCAAATTTACTGTGTGAACTTTGCTTTCTTGTGTTCCGGTTACCTACTGGTTTAGGATATTGCCTCTACCGTGCCATGGTGGTCAATTATAATCCTTCATATTGCTTTGGGATCTAAGCTATCCGTATGTTTAGCCATTTGTTGCTTTGTATCTTTTGGCTCTTGATTTCTGTGTTTTGTGCTCTTTAAAGCTGATTCCAATAGCCTGAAGTTTTATGGAATTCTTTTTAATCAAGGAGAAGGAGTTTGTTGGGAATGAATTGTTGGAGGAACCTTGTAATACATGAAGGCACTGTATAAAATATTAGTACATCCTGCAATTGTGCTTCACATATCGATCCCGAATGTGTATATAAAATGGTTGCAGTGGGAAGGCTACATGCTTTATTCACTTTATTAAAAAATGGCTTTATGCTTTATCCAAACCTTATCTTTCTTAATTGGAGAAAGCTCTCCCTTGCAAGGGGCAAAAAGAAATGTGGAAGGCAACATGGAAGAGGGATTGTCTTTCCAAAGTCTATGTTTGGAGTTAATGGTGCAATGTCTTCACTTTTACCATCTATTTGGTTTGCTAAATTCTAGAAAGATTATTGAACTAGTCTGGTCTCTATCACTTATCTGGGCATAATGAGGACATCTACTTGTTTTTCTCTCGGATTGTCTATTTGCCTGAGTGCACAAAAGGACATGCCTAATTTTACTCGTGATATTGCTTTCGTAATGCTAAGAAATTGCACATGTGCTCTATTTTCCTTTTATTATAATCTGTCCCTAGAGCCCTGCTGATGCTGTTTCCTTTCAGTATCCCGTGTAACCATTATGTTCCTCCATTTTTTCCTTTTCGTTAGTGGAGGCTCATGAGCTTTTTGATACTATTCTTTCCAGCTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATGGTATGTTAGGTTTTTGACAACGACTCCCCTCCCTCCAATTTAAACCACGAGAATGCTACTACAACTGAGAGCCCAAAGCTCTAGGCATAGGTTCTTATAATGTTGCAATGTCCACTCTTGCTTTATTAATTGGTTTCCTCTCTCATCTATGTCCATGTTGATTCATACTCGTGAAGATTTGACATCCCTTATTGTTTTATATATATACATCTATACCTCATGATCAGAATCGACTGTCTACTAGTTCATTCATTAGGATTTTAAAAATGTTGTATTTTGATCAATTTCACTGAGTGTCATCTTTGCTTGATTCAATTAACCAACAACATACATAGTGTAGTCACAAAGTGAGGTATGGGGAGGGTAAAGTATTCGCAGTCCTTACCCTCACTTTGGAGGTAGAGCGACTTCCCAATTAACCATGCATGAAAACGTCTGTTGAGTTATTTTCCCGAATATAGTTTTGGAATGGCAACGAGAGAAAGGGGTACAACAAGTTAATCTTTTCCTAAGAATCAAGAATCTGGCAGAAGCCTTTAACATTTAGTTGCTTAATGTCATAGGTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAAATTTTTGTGCTCT</genome_strand>
        <mrna_strand>CTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAAATTTTTGTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250310" ref_strand="+" ref_description="SGN-E250310 [cLEG-6-H19]">
      <seq>ggaagactctgtatccaagtctttcttaaagagacactgggaaggttacaaggagttttggggtgagagattctcttttttggataactattcaaggttcatcaaacgcgataagccattaccgtcgtggtctgaagctgatgtggaggagttcattgcttctgagccagttcatggaccaacactgaagactgctagggaagcagctaagtttggtgctgtaggaggcctacttggagctgtttcaactgcaggagttacatggaagtactcaaggagtctgcatggtactgcattgtcccttggagctggagctgtctttggctggacattcggacaggaagtcgccaaccaccggctgcagctatacaggatggatacaatggcttcacaggtgaagttcatggaatggtggcagaacaaagtcgaacgacagtcttaattttctctcttcctgtacgagatttgaagaaacaaaaactctggatttgctcgttagcgcgataacacagtcattttgttattggcaataaaaatttgttgacagtgttcaacttgtatctggtgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="82408" stop="78654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82109" g_stop="81926" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79901" g_stop="79799" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="287" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79798" i_stop="79236" i_length="563">
            <donor d_prob="0.290" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79235" g_stop="78949" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="574" r_length="287" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E250310" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82109" e_stop="81926"/>
          <exon e_start="79901" e_stop="79799"/>
          <exon e_start="79235" e_stop="78949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACAGTATGCATTCATATCCAATTTGGGATAAAGATATCTTTTTTCTTAATATTTATGTTATTTGGGTGTTTTTCCTATTTGGGTTTTCATTGATTTGGCTATTGGTTTGATCTGTATGGTTTTTATGTGCATTTACAGTTGTTTGGGTGTTTTCCTATCTGAGTTTTCATTGATTTAGCTGTTGTTTTGATCTGTACGCTTATATCTTTATGCCCTTTTAGCTATGTGTGTGGTGATTTTGATTTGATGTTGAGGAGTTTATTGCTTTCTGACCCAGTTTATGGACCAATTGTATGCTTTCATTTCTGATTTGTTCTATCTTTTTGCTGAATAGTTTATGTGCATTTACAGTTATTTGGGTGTTTCCCTTATCTGGTTCTTTTCTGTGTGTGTACATTTTTTGAGATTTTCTCTGTATGTGTGTTGAAGCTGATGTTGAGGAGTTCATTGTTTTTGGTTTAGGAAGTTCTTTCATTTCCGATTGTTCTCTTTTTTTTCTAAATTGTATGTGCATTTACAGTTATCTGGGGTTTCCCGTACCTGTGTTTTCATTGATTTAACTGTTTCTTTATCCATTTGTTTCTGTTGTTATGCCCTTTTAGCTTTTAGATTGAAGATGCTCTTTGGTTTTGGATTGAGTCAATGCGTCGTGCTCGTTTCTTGGGTATGTGGCAATATTATTCTCTGTCTATGTCTGTTTGCTATTGTTTTAACATCTTATTCTTGGGGCGGGTAAGTTTTGGAGAAAATGGAGTTCTGTAGTCATTGTCCCTTTGAGCTCTTTTATTGCTTAGCAAAATTTTAGGACAGAAACTTAGGGCTGTAATATCGTTCGACGAGGAGAACTTGCTTTAGGATGTTGTTATGCATAGAGTGCCTCCATTACTATTGGCTGCTTGTTTGATTTTGGCAATGTTGGGGTCTTTGGTGTTTAATTGGACTTCCTTTAATTGCTTGAGTAACAAAATTATTTCTTTTTCATTCTCTAGAATTGCGACTTATACGTTCTGTCCAAGTTTGAACTTAATACGTGTTTCTTGAATCTTTGAAATGCGTTTTCCTATGATTAACTTTATCCTGACTGTTCTTGAATCGATTAGTTACATGATGATTAACTTGGCTCTGTTGCTTCACAATTTCTGCCAAATTTACTGTGTGAACTTTGCTTTCTTGTGTTCCGGTTACCTACTGGTTTAGGATATTGCCTCTACCGTGCCATGGTGGTCAATTATAATCCTTCATATTGCTTTGGGATCTAAGCTATCCGTATGTTTAGCCATTTGTTGCTTTGTATCTTTTGGCTCTTGATTTCTGTGTTTTGTGCTCTTTAAAGCTGATTCCAATAGCCTGAAGTTTTATGGAATTCTTTTTAATCAAGGAGAAGGAGTTTGTTGGGAATGAATTGTTGGAGGAACCTTGTAATACATGAAGGCACTGTATAAAATATTAGTACATCCTGCAATTGTGCTTCACATATCGATCCCGAATGTGTATATAAAATGGTTGCAGTGGGAAGGCTACATGCTTTATTCACTTTATTAAAAAATGGCTTTATGCTTTATCCAAACCTTATCTTTCTTAATTGGAGAAAGCTCTCCCTTGCAAGGGGCAAAAAGAAATGTGGAAGGCAACATGGAAGAGGGATTGTCTTTCCAAAGTCTATGTTTGGAGTTAATGGTGCAATGTCTTCACTTTTACCATCTATTTGGTTTGCTAAATTCTAGAAAGATTATTGAACTAGTCTGGTCTCTATCACTTATCTGGGCATAATGAGGACATCTACTTGTTTTTCTCTCGGATTGTCTATTTGCCTGAGTGCACAAAAGGACATGCCTAATTTTACTCGTGATATTGCTTTCGTAATGCTAAGAAATTGCACATGTGCTCTATTTTCCTTTTATTATAATCTGTCCCTAGAGCCCTGCTGATGCTGTTTCCTTTCAGTATCCCGTGTAACCATTATGTTCCTCCATTTTTTCCTTTTCGTTAGTGGAGGCTCATGAGCTTTTTGATACTATTCTTTCCAGCTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATGGTATGTTAGGTTTTTGACAACGACTCCCCTCCCTCCAATTTAAACCACGAGAATGCTACTACAACTGAGAGCCCAAAGCTCTAGGCATAGGTTCTTATAATGTTGCAATGTCCACTCTTGCTTTATTAATTGGTTTCCTCTCTCATCTATGTCCATGTTGATTCATACTCGTGAAGATTTGACATCCCTTATTGTTTTATATATATACATCTATACCTCATGATCAGAATCGACTGTCTACTAGTTCATTCATTAGGATTTTAAAAATGTTGTATTTTGATCAATTTCACTGAGTGTCATCTTTGCTTGATTCAATTAACCAACAACATACATAGTGTAGTCACAAAGTGAGGTATGGGGAGGGTAAAGTATTCGCAGTCCTTACCCTCACTTTGGAGGTAGAGCGACTTCCCAATTAACCATGCATGAAAACGTCTGTTGAGTTATTTTCCCGAATATAGTTTTGGAATGGCAACGAGAGAAAGGGGTACAACAAGTTAATCTTTTCCTAAGAATCAAGAATCTGGCAGAAGCCTTTAACATTTAGTTGCTTAATGTCATAGGTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAA</genome_strand>
        <mrna_strand>GGAAGACTCTGTATCCAAGTCTTTCTTAAAGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCTTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338579" ref_strand="+" ref_description="SGN-E338579 [cTOE-15-C22]">
      <seq>gctgaagaagactctgtatccaagtctttcttaaggagacactgggaaggttacaaggagttttggggtgagagattctcctttttggataactattcaaggttcatcaaacgcgataagccattaccgtcgtggtctgaagctgatgtggaggagttcattgcttctgagccagttcatggaccaacactgaagactgctagggaagcagctaagtttggtgctgtaggaggcctacttggagctgtttcaactgcaggagttacatggaagtactcaaggagtctgcatggtactgcattgtcccttggagctggagctgtctttggctggacattcggacaggaagtcgccaaccaccggctgcagctatacaggatggatacaatggcttcacaggtgaagttcatggaatggtggcagaacaaagtcgaacgacagtcttaattttctctcttcctgtacgagatttgaagaaacaaaaactctggatttgctcgttagcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="82414" stop="78720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82114" g_stop="81926" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79901" g_stop="79799" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="292" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79798" i_stop="79236" i_length="563">
            <donor d_prob="0.290" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79235" g_stop="79020" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="508" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E338579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82114" e_stop="81926"/>
          <exon e_start="79901" e_stop="79799"/>
          <exon e_start="79235" e_stop="79020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACAGTATGCATTCATATCCAATTTGGGATAAAGATATCTTTTTTCTTAATATTTATGTTATTTGGGTGTTTTTCCTATTTGGGTTTTCATTGATTTGGCTATTGGTTTGATCTGTATGGTTTTTATGTGCATTTACAGTTGTTTGGGTGTTTTCCTATCTGAGTTTTCATTGATTTAGCTGTTGTTTTGATCTGTACGCTTATATCTTTATGCCCTTTTAGCTATGTGTGTGGTGATTTTGATTTGATGTTGAGGAGTTTATTGCTTTCTGACCCAGTTTATGGACCAATTGTATGCTTTCATTTCTGATTTGTTCTATCTTTTTGCTGAATAGTTTATGTGCATTTACAGTTATTTGGGTGTTTCCCTTATCTGGTTCTTTTCTGTGTGTGTACATTTTTTGAGATTTTCTCTGTATGTGTGTTGAAGCTGATGTTGAGGAGTTCATTGTTTTTGGTTTAGGAAGTTCTTTCATTTCCGATTGTTCTCTTTTTTTTCTAAATTGTATGTGCATTTACAGTTATCTGGGGTTTCCCGTACCTGTGTTTTCATTGATTTAACTGTTTCTTTATCCATTTGTTTCTGTTGTTATGCCCTTTTAGCTTTTAGATTGAAGATGCTCTTTGGTTTTGGATTGAGTCAATGCGTCGTGCTCGTTTCTTGGGTATGTGGCAATATTATTCTCTGTCTATGTCTGTTTGCTATTGTTTTAACATCTTATTCTTGGGGCGGGTAAGTTTTGGAGAAAATGGAGTTCTGTAGTCATTGTCCCTTTGAGCTCTTTTATTGCTTAGCAAAATTTTAGGACAGAAACTTAGGGCTGTAATATCGTTCGACGAGGAGAACTTGCTTTAGGATGTTGTTATGCATAGAGTGCCTCCATTACTATTGGCTGCTTGTTTGATTTTGGCAATGTTGGGGTCTTTGGTGTTTAATTGGACTTCCTTTAATTGCTTGAGTAACAAAATTATTTCTTTTTCATTCTCTAGAATTGCGACTTATACGTTCTGTCCAAGTTTGAACTTAATACGTGTTTCTTGAATCTTTGAAATGCGTTTTCCTATGATTAACTTTATCCTGACTGTTCTTGAATCGATTAGTTACATGATGATTAACTTGGCTCTGTTGCTTCACAATTTCTGCCAAATTTACTGTGTGAACTTTGCTTTCTTGTGTTCCGGTTACCTACTGGTTTAGGATATTGCCTCTACCGTGCCATGGTGGTCAATTATAATCCTTCATATTGCTTTGGGATCTAAGCTATCCGTATGTTTAGCCATTTGTTGCTTTGTATCTTTTGGCTCTTGATTTCTGTGTTTTGTGCTCTTTAAAGCTGATTCCAATAGCCTGAAGTTTTATGGAATTCTTTTTAATCAAGGAGAAGGAGTTTGTTGGGAATGAATTGTTGGAGGAACCTTGTAATACATGAAGGCACTGTATAAAATATTAGTACATCCTGCAATTGTGCTTCACATATCGATCCCGAATGTGTATATAAAATGGTTGCAGTGGGAAGGCTACATGCTTTATTCACTTTATTAAAAAATGGCTTTATGCTTTATCCAAACCTTATCTTTCTTAATTGGAGAAAGCTCTCCCTTGCAAGGGGCAAAAAGAAATGTGGAAGGCAACATGGAAGAGGGATTGTCTTTCCAAAGTCTATGTTTGGAGTTAATGGTGCAATGTCTTCACTTTTACCATCTATTTGGTTTGCTAAATTCTAGAAAGATTATTGAACTAGTCTGGTCTCTATCACTTATCTGGGCATAATGAGGACATCTACTTGTTTTTCTCTCGGATTGTCTATTTGCCTGAGTGCACAAAAGGACATGCCTAATTTTACTCGTGATATTGCTTTCGTAATGCTAAGAAATTGCACATGTGCTCTATTTTCCTTTTATTATAATCTGTCCCTAGAGCCCTGCTGATGCTGTTTCCTTTCAGTATCCCGTGTAACCATTATGTTCCTCCATTTTTTCCTTTTCGTTAGTGGAGGCTCATGAGCTTTTTGATACTATTCTTTCCAGCTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATGGTATGTTAGGTTTTTGACAACGACTCCCCTCCCTCCAATTTAAACCACGAGAATGCTACTACAACTGAGAGCCCAAAGCTCTAGGCATAGGTTCTTATAATGTTGCAATGTCCACTCTTGCTTTATTAATTGGTTTCCTCTCTCATCTATGTCCATGTTGATTCATACTCGTGAAGATTTGACATCCCTTATTGTTTTATATATATACATCTATACCTCATGATCAGAATCGACTGTCTACTAGTTCATTCATTAGGATTTTAAAAATGTTGTATTTTGATCAATTTCACTGAGTGTCATCTTTGCTTGATTCAATTAACCAACAACATACATAGTGTAGTCACAAAGTGAGGTATGGGGAGGGTAAAGTATTCGCAGTCCTTACCCTCACTTTGGAGGTAGAGCGACTTCCCAATTAACCATGCATGAAAACGTCTGTTGAGTTATTTTCCCGAATATAGTTTTGGAATGGCAACGAGAGAAAGGGGTACAACAAGTTAATCTTTTCCTAAGAATCAAGAATCTGGCAGAAGCCTTTAACATTTAGTTGCTTAATGTCATAGGTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCG</genome_strand>
        <mrna_strand>GCTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277648" ref_strand="+" ref_description="SGN-E277648 [cLER-6-I10]">
      <seq>ctgtatccaagtctttcttaaggagacactgggaaggttacaaggagttttggggtgagagattctcctttttggataactattcaaggttcatcaaacgcgataagccattaccgtcgtggtctgaagctgatgtggaggagttcattgcttctgagccagttcatggaccaacactgaagactgctagggaagcagctaagtttggtgctgtaggaggcctacttggagctgtttcaactgcaggagttacatggaagtactcaaggagtctgcatggtactgcattgtcccttggagctggagctgtctttggctggacattcggacaggaagtcgccaaccaccggctgcagctatacaggatggatacaatggcttcacaggtgaagttcatggaatggtggcagaacaaagtcgaacgacagtcttaattttctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="82401" stop="78771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82101" g_stop="81926" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79901" g_stop="79799" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="279" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79798" i_stop="79236" i_length="563">
            <donor d_prob="0.290" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79235" g_stop="79071" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="444" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E277648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82101" e_stop="81926"/>
          <exon e_start="79901" e_stop="79799"/>
          <exon e_start="79235" e_stop="79071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACAGTATGCATTCATATCCAATTTGGGATAAAGATATCTTTTTTCTTAATATTTATGTTATTTGGGTGTTTTTCCTATTTGGGTTTTCATTGATTTGGCTATTGGTTTGATCTGTATGGTTTTTATGTGCATTTACAGTTGTTTGGGTGTTTTCCTATCTGAGTTTTCATTGATTTAGCTGTTGTTTTGATCTGTACGCTTATATCTTTATGCCCTTTTAGCTATGTGTGTGGTGATTTTGATTTGATGTTGAGGAGTTTATTGCTTTCTGACCCAGTTTATGGACCAATTGTATGCTTTCATTTCTGATTTGTTCTATCTTTTTGCTGAATAGTTTATGTGCATTTACAGTTATTTGGGTGTTTCCCTTATCTGGTTCTTTTCTGTGTGTGTACATTTTTTGAGATTTTCTCTGTATGTGTGTTGAAGCTGATGTTGAGGAGTTCATTGTTTTTGGTTTAGGAAGTTCTTTCATTTCCGATTGTTCTCTTTTTTTTCTAAATTGTATGTGCATTTACAGTTATCTGGGGTTTCCCGTACCTGTGTTTTCATTGATTTAACTGTTTCTTTATCCATTTGTTTCTGTTGTTATGCCCTTTTAGCTTTTAGATTGAAGATGCTCTTTGGTTTTGGATTGAGTCAATGCGTCGTGCTCGTTTCTTGGGTATGTGGCAATATTATTCTCTGTCTATGTCTGTTTGCTATTGTTTTAACATCTTATTCTTGGGGCGGGTAAGTTTTGGAGAAAATGGAGTTCTGTAGTCATTGTCCCTTTGAGCTCTTTTATTGCTTAGCAAAATTTTAGGACAGAAACTTAGGGCTGTAATATCGTTCGACGAGGAGAACTTGCTTTAGGATGTTGTTATGCATAGAGTGCCTCCATTACTATTGGCTGCTTGTTTGATTTTGGCAATGTTGGGGTCTTTGGTGTTTAATTGGACTTCCTTTAATTGCTTGAGTAACAAAATTATTTCTTTTTCATTCTCTAGAATTGCGACTTATACGTTCTGTCCAAGTTTGAACTTAATACGTGTTTCTTGAATCTTTGAAATGCGTTTTCCTATGATTAACTTTATCCTGACTGTTCTTGAATCGATTAGTTACATGATGATTAACTTGGCTCTGTTGCTTCACAATTTCTGCCAAATTTACTGTGTGAACTTTGCTTTCTTGTGTTCCGGTTACCTACTGGTTTAGGATATTGCCTCTACCGTGCCATGGTGGTCAATTATAATCCTTCATATTGCTTTGGGATCTAAGCTATCCGTATGTTTAGCCATTTGTTGCTTTGTATCTTTTGGCTCTTGATTTCTGTGTTTTGTGCTCTTTAAAGCTGATTCCAATAGCCTGAAGTTTTATGGAATTCTTTTTAATCAAGGAGAAGGAGTTTGTTGGGAATGAATTGTTGGAGGAACCTTGTAATACATGAAGGCACTGTATAAAATATTAGTACATCCTGCAATTGTGCTTCACATATCGATCCCGAATGTGTATATAAAATGGTTGCAGTGGGAAGGCTACATGCTTTATTCACTTTATTAAAAAATGGCTTTATGCTTTATCCAAACCTTATCTTTCTTAATTGGAGAAAGCTCTCCCTTGCAAGGGGCAAAAAGAAATGTGGAAGGCAACATGGAAGAGGGATTGTCTTTCCAAAGTCTATGTTTGGAGTTAATGGTGCAATGTCTTCACTTTTACCATCTATTTGGTTTGCTAAATTCTAGAAAGATTATTGAACTAGTCTGGTCTCTATCACTTATCTGGGCATAATGAGGACATCTACTTGTTTTTCTCTCGGATTGTCTATTTGCCTGAGTGCACAAAAGGACATGCCTAATTTTACTCGTGATATTGCTTTCGTAATGCTAAGAAATTGCACATGTGCTCTATTTTCCTTTTATTATAATCTGTCCCTAGAGCCCTGCTGATGCTGTTTCCTTTCAGTATCCCGTGTAACCATTATGTTCCTCCATTTTTTCCTTTTCGTTAGTGGAGGCTCATGAGCTTTTTGATACTATTCTTTCCAGCTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATGGTATGTTAGGTTTTTGACAACGACTCCCCTCCCTCCAATTTAAACCACGAGAATGCTACTACAACTGAGAGCCCAAAGCTCTAGGCATAGGTTCTTATAATGTTGCAATGTCCACTCTTGCTTTATTAATTGGTTTCCTCTCTCATCTATGTCCATGTTGATTCATACTCGTGAAGATTTGACATCCCTTATTGTTTTATATATATACATCTATACCTCATGATCAGAATCGACTGTCTACTAGTTCATTCATTAGGATTTTAAAAATGTTGTATTTTGATCAATTTCACTGAGTGTCATCTTTGCTTGATTCAATTAACCAACAACATACATAGTGTAGTCACAAAGTGAGGTATGGGGAGGGTAAAGTATTCGCAGTCCTTACCCTCACTTTGGAGGTAGAGCGACTTCCCAATTAACCATGCATGAAAACGTCTGTTGAGTTATTTTCCCGAATATAGTTTTGGAATGGCAACGAGAGAAAGGGGTACAACAAGTTAATCTTTTCCTAAGAATCAAGAATCTGGCAGAAGCCTTTAACATTTAGTTGCTTAATGTCATAGGTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCT</genome_strand>
        <mrna_strand>CTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277592" ref_strand="+" ref_description="SGN-E277592 [cLER-6-M22]">
      <seq>aatactctgtatccaagtctttcttaaggagacactgggaaggttacaaggagttttggggtgagagattctcctttttggataactattcaaggttcatcaaacgcgataagccattaccgtcgtggtctgaagctgatgtggaggagttcattgcttctgagccagttcatggaccaacactgaagactgctagggaagcagctaagtttggtgctgtaggaggcctacttggagctgtttcaactgcaggagttacatggaagtactcaaggagtctgcatggtactgcattgtcccttggagctggagctgtctttggctggacattcggacaggaagtcgccaaccaccggctgcagctatacaggatggatacaatggcttcacaggtgaagttcatggaatggtggcagaacaaagtcgaacgacagtcttaattttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="82407" stop="78774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82107" g_stop="81926" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79901" g_stop="79799" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="285" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79798" i_stop="79236" i_length="563">
            <donor d_prob="0.290" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79235" g_stop="79074" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="447" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E277592" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82107" e_stop="81926"/>
          <exon e_start="79901" e_stop="79799"/>
          <exon e_start="79235" e_stop="79074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACAGTATGCATTCATATCCAATTTGGGATAAAGATATCTTTTTTCTTAATATTTATGTTATTTGGGTGTTTTTCCTATTTGGGTTTTCATTGATTTGGCTATTGGTTTGATCTGTATGGTTTTTATGTGCATTTACAGTTGTTTGGGTGTTTTCCTATCTGAGTTTTCATTGATTTAGCTGTTGTTTTGATCTGTACGCTTATATCTTTATGCCCTTTTAGCTATGTGTGTGGTGATTTTGATTTGATGTTGAGGAGTTTATTGCTTTCTGACCCAGTTTATGGACCAATTGTATGCTTTCATTTCTGATTTGTTCTATCTTTTTGCTGAATAGTTTATGTGCATTTACAGTTATTTGGGTGTTTCCCTTATCTGGTTCTTTTCTGTGTGTGTACATTTTTTGAGATTTTCTCTGTATGTGTGTTGAAGCTGATGTTGAGGAGTTCATTGTTTTTGGTTTAGGAAGTTCTTTCATTTCCGATTGTTCTCTTTTTTTTCTAAATTGTATGTGCATTTACAGTTATCTGGGGTTTCCCGTACCTGTGTTTTCATTGATTTAACTGTTTCTTTATCCATTTGTTTCTGTTGTTATGCCCTTTTAGCTTTTAGATTGAAGATGCTCTTTGGTTTTGGATTGAGTCAATGCGTCGTGCTCGTTTCTTGGGTATGTGGCAATATTATTCTCTGTCTATGTCTGTTTGCTATTGTTTTAACATCTTATTCTTGGGGCGGGTAAGTTTTGGAGAAAATGGAGTTCTGTAGTCATTGTCCCTTTGAGCTCTTTTATTGCTTAGCAAAATTTTAGGACAGAAACTTAGGGCTGTAATATCGTTCGACGAGGAGAACTTGCTTTAGGATGTTGTTATGCATAGAGTGCCTCCATTACTATTGGCTGCTTGTTTGATTTTGGCAATGTTGGGGTCTTTGGTGTTTAATTGGACTTCCTTTAATTGCTTGAGTAACAAAATTATTTCTTTTTCATTCTCTAGAATTGCGACTTATACGTTCTGTCCAAGTTTGAACTTAATACGTGTTTCTTGAATCTTTGAAATGCGTTTTCCTATGATTAACTTTATCCTGACTGTTCTTGAATCGATTAGTTACATGATGATTAACTTGGCTCTGTTGCTTCACAATTTCTGCCAAATTTACTGTGTGAACTTTGCTTTCTTGTGTTCCGGTTACCTACTGGTTTAGGATATTGCCTCTACCGTGCCATGGTGGTCAATTATAATCCTTCATATTGCTTTGGGATCTAAGCTATCCGTATGTTTAGCCATTTGTTGCTTTGTATCTTTTGGCTCTTGATTTCTGTGTTTTGTGCTCTTTAAAGCTGATTCCAATAGCCTGAAGTTTTATGGAATTCTTTTTAATCAAGGAGAAGGAGTTTGTTGGGAATGAATTGTTGGAGGAACCTTGTAATACATGAAGGCACTGTATAAAATATTAGTACATCCTGCAATTGTGCTTCACATATCGATCCCGAATGTGTATATAAAATGGTTGCAGTGGGAAGGCTACATGCTTTATTCACTTTATTAAAAAATGGCTTTATGCTTTATCCAAACCTTATCTTTCTTAATTGGAGAAAGCTCTCCCTTGCAAGGGGCAAAAAGAAATGTGGAAGGCAACATGGAAGAGGGATTGTCTTTCCAAAGTCTATGTTTGGAGTTAATGGTGCAATGTCTTCACTTTTACCATCTATTTGGTTTGCTAAATTCTAGAAAGATTATTGAACTAGTCTGGTCTCTATCACTTATCTGGGCATAATGAGGACATCTACTTGTTTTTCTCTCGGATTGTCTATTTGCCTGAGTGCACAAAAGGACATGCCTAATTTTACTCGTGATATTGCTTTCGTAATGCTAAGAAATTGCACATGTGCTCTATTTTCCTTTTATTATAATCTGTCCCTAGAGCCCTGCTGATGCTGTTTCCTTTCAGTATCCCGTGTAACCATTATGTTCCTCCATTTTTTCCTTTTCGTTAGTGGAGGCTCATGAGCTTTTTGATACTATTCTTTCCAGCTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATGGTATGTTAGGTTTTTGACAACGACTCCCCTCCCTCCAATTTAAACCACGAGAATGCTACTACAACTGAGAGCCCAAAGCTCTAGGCATAGGTTCTTATAATGTTGCAATGTCCACTCTTGCTTTATTAATTGGTTTCCTCTCTCATCTATGTCCATGTTGATTCATACTCGTGAAGATTTGACATCCCTTATTGTTTTATATATATACATCTATACCTCATGATCAGAATCGACTGTCTACTAGTTCATTCATTAGGATTTTAAAAATGTTGTATTTTGATCAATTTCACTGAGTGTCATCTTTGCTTGATTCAATTAACCAACAACATACATAGTGTAGTCACAAAGTGAGGTATGGGGAGGGTAAAGTATTCGCAGTCCTTACCCTCACTTTGGAGGTAGAGCGACTTCCCAATTAACCATGCATGAAAACGTCTGTTGAGTTATTTTCCCGAATATAGTTTTGGAATGGCAACGAGAGAAAGGGGTACAACAAGTTAATCTTTTCCTAAGAATCAAGAATCTGGCAGAAGCCTTTAACATTTAGTTGCTTAATGTCATAGGTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTC</genome_strand>
        <mrna_strand>AATACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E248350" ref_strand="+" ref_description="SGN-E248350 [cLEG-1-N10]">
      <seq>aagactctgtatccaagtctttcttaatgagacactgggaaggttacaaggagtttgggggtgatagattctcttttttggataactattcaaggttcatcaaacgcgataagccattaccgtcgtggtctgaagctgatgtggaggagttcattgcttctgagccagttcatggaccaacactgaagactgctagggaagcagctaagtttggtgctgtaggaggcctacttggagctggttcaactgcaggagttacatggaagtactcaaggagtctgcatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="82407" stop="79497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82107" g_stop="81926" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79901" g_stop="79797" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="287" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E248350" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82107" e_stop="81926"/>
          <exon e_start="79901" e_stop="79797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACAGTATGCATTCATATCCAATTTGGGATAAAGATATCTTTTTTCTTAATATTTATGTTATTTGGGTGTTTTTCCTATTTGGGTTTTCATTGATTTGGCTATTGGTTTGATCTGTATGGTTTTTATGTGCATTTACAGTTGTTTGGGTGTTTTCCTATCTGAGTTTTCATTGATTTAGCTGTTGTTTTGATCTGTACGCTTATATCTTTATGCCCTTTTAGCTATGTGTGTGGTGATTTTGATTTGATGTTGAGGAGTTTATTGCTTTCTGACCCAGTTTATGGACCAATTGTATGCTTTCATTTCTGATTTGTTCTATCTTTTTGCTGAATAGTTTATGTGCATTTACAGTTATTTGGGTGTTTCCCTTATCTGGTTCTTTTCTGTGTGTGTACATTTTTTGAGATTTTCTCTGTATGTGTGTTGAAGCTGATGTTGAGGAGTTCATTGTTTTTGGTTTAGGAAGTTCTTTCATTTCCGATTGTTCTCTTTTTTTTCTAAATTGTATGTGCATTTACAGTTATCTGGGGTTTCCCGTACCTGTGTTTTCATTGATTTAACTGTTTCTTTATCCATTTGTTTCTGTTGTTATGCCCTTTTAGCTTTTAGATTGAAGATGCTCTTTGGTTTTGGATTGAGTCAATGCGTCGTGCTCGTTTCTTGGGTATGTGGCAATATTATTCTCTGTCTATGTCTGTTTGCTATTGTTTTAACATCTTATTCTTGGGGCGGGTAAGTTTTGGAGAAAATGGAGTTCTGTAGTCATTGTCCCTTTGAGCTCTTTTATTGCTTAGCAAAATTTTAGGACAGAAACTTAGGGCTGTAATATCGTTCGACGAGGAGAACTTGCTTTAGGATGTTGTTATGCATAGAGTGCCTCCATTACTATTGGCTGCTTGTTTGATTTTGGCAATGTTGGGGTCTTTGGTGTTTAATTGGACTTCCTTTAATTGCTTGAGTAACAAAATTATTTCTTTTTCATTCTCTAGAATTGCGACTTATACGTTCTGTCCAAGTTTGAACTTAATACGTGTTTCTTGAATCTTTGAAATGCGTTTTCCTATGATTAACTTTATCCTGACTGTTCTTGAATCGATTAGTTACATGATGATTAACTTGGCTCTGTTGCTTCACAATTTCTGCCAAATTTACTGTGTGAACTTTGCTTTCTTGTGTTCCGGTTACCTACTGGTTTAGGATATTGCCTCTACCGTGCCATGGTGGTCAATTATAATCCTTCATATTGCTTTGGGATCTAAGCTATCCGTATGTTTAGCCATTTGTTGCTTTGTATCTTTTGGCTCTTGATTTCTGTGTTTTGTGCTCTTTAAAGCTGATTCCAATAGCCTGAAGTTTTATGGAATTCTTTTTAATCAAGGAGAAGGAGTTTGTTGGGAATGAATTGTTGGAGGAACCTTGTAATACATGAAGGCACTGTATAAAATATTAGTACATCCTGCAATTGTGCTTCACATATCGATCCCGAATGTGTATATAAAATGGTTGCAGTGGGAAGGCTACATGCTTTATTCACTTTATTAAAAAATGGCTTTATGCTTTATCCAAACCTTATCTTTCTTAATTGGAGAAAGCTCTCCCTTGCAAGGGGCAAAAAGAAATGTGGAAGGCAACATGGAAGAGGGATTGTCTTTCCAAAGTCTATGTTTGGAGTTAATGGTGCAATGTCTTCACTTTTACCATCTATTTGGTTTGCTAAATTCTAGAAAGATTATTGAACTAGTCTGGTCTCTATCACTTATCTGGGCATAATGAGGACATCTACTTGTTTTTCTCTCGGATTGTCTATTTGCCTGAGTGCACAAAAGGACATGCCTAATTTTACTCGTGATATTGCTTTCGTAATGCTAAGAAATTGCACATGTGCTCTATTTTCCTTTTATTATAATCTGTCCCTAGAGCCCTGCTGATGCTGTTTCCTTTCAGTATCCCGTGTAACCATTATGTTCCTCCATTTTTTCCTTTTCGTTAGTGGAGGCTCATGAGCTTTTTGATACTATTCTTTCCAGCTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATGGT</genome_strand>
        <mrna_strand>AAGACTCTGTATCCAAGTCTTTCTTAATGAGACACTGGGAAGGTTACAAGGAGTTTGGGGGTGATAGATTCTCTTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGGTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224926" ref_strand="+" ref_description="SGN-E224926 [cLEL-27-O9](-)">
      <seq>ccctcgactccgtcaattcttgctgaagcttcccatctctgcaaagctccaatacctcattcacattggtggcaggttcactgcagttgtcgtgaagtacagccccgagggcaagctgttgcagatattggaagatcgacaagggaaagtcgttagagctgtcagcgaggtagaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgctttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatttaaataaaggtttgatagtggcgtacacagaacttgtttgtaagctaagtcatcatttaaagaagtgtttgataattcagagatgaaaaatgaaacacgatatatataacgctatcccatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="83405" stop="82338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83105" g_stop="82643" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="479"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E224926" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83105" e_stop="82643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAATGAAACACGATATATATATCGCTATAACATCA</genome_strand>
        <mrna_strand>CCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAATGAAACACGATATATATAACGCTATCCCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224426" ref_strand="+" ref_description="SGN-E224426 [cLEL-27-O9](-)">
      <seq>gtcgtgaagtacagccccgagggcaagctgttgcagatattggaagatcgacaagggaaagtcgttagagctgtcagcgaggtagaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgctttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatttaaataaaggtttgatagtggcgtacacagaacttgtttgtaagctaagtcatcatttaaagaagtgtttgataattcagagatgaaaaatgaaacacgatatatatatcgctatancatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="83317" stop="82338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83017" g_stop="82643" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="391"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E224426" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83017" e_stop="82643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAATGAAACACGATATATATATCGCTATAACATCA</genome_strand>
        <mrna_strand>GTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAATGAAACACGATATATATATCGCTATANCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217417" ref_strand="+" ref_description="SGN-E217417 [cLEL-21-K15](-)">
      <seq>gaaatgagttttgggtagcaatccactgtcgtcgtaccatctacagttacataaatggcatataccctcgactccgtcaattcttgctgaagcttcccatctctgcaaagctccaatacctcattcacattggtggcaggttcactgcagttgtcgtgaagtacagccccgagggcaagctgttgcagatattggaagatcgacaagggaaagtcgttagagctgtcagcgaggtagaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgctttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatttaaataaaggtttgatagtggcgtacacagaacttgtttgtaagctaagtcatcatttaaagaagtgtttgataattcagagatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="83469" stop="82363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83169" g_stop="82662" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E217417" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83169" e_stop="82662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAATGAAACACGATAT</genome_strand>
        <mrna_strand>GAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217326" ref_strand="+" ref_description="SGN-E217326 [cLEL-21-K13](-)">
      <seq>cttcccatctttgcaaagctccaatacctcattcacattggtggcaggttcactgcagttgtcgtaaagtacagccccgagggcaagctgttgcagatattggaagatcgaccaagggaaagtcgttagagctgtcagcgaggtagaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgctttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatttaaataaaggtttgatagtggcgtacacagaacttgtttgtaagctaagtcatcatttaaagaagtgtttgataattcagagatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="83377" stop="82363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83077" g_stop="82662" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E217326" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83077" e_stop="82662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGA-CAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAATGAAACACGATAT</genome_strand>
        <mrna_strand>CTTCCCATCTTTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTAAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACCAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745634" ref_strand="+" ref_description="SGN-E745634 [GI|47105236]">
      <seq>ggtaccttgttagatagccaacattctttcacaattcttccttttggggtatactataattccaaaattttcaaccccatttcatgattttcccttttactcaaaccccattatcataaagtttcaatttttatcaagaaaatgagagcagtttcagtatttggtggtgtgttccttgtgttggcagtgtattgtgggttggacccttttaagcatagtgcaatttctgagttcccaaattttgagtcttttgaggttgagatgccagcttggtctgaaatcccagttgaaaaagattcacaaaatttgcttcaaaaatctgaagttaagttcttggatcaaattcaggggccagaaagtattgtttttgatcctcagggtagaggaccttatacagggatagctgatggaagagttgtgttttgggatggtgaaaaatggaatgattttgcttatacttcagctaataggtcaggcttgtgtgatccaaaaccgtcagcgttgagctataggaagtacgagcacatctgtggtaggcctttggggttacgatttgacaaaagaacaggtgacttatatattgccgatgcatatttggggttaatgaaggtaggccctgaaggtggattagcagaatctttgacaactgaggctgagggggtacctataggatttgcaaatgacttggatgttgatgatgaagggaatgtttattttacggatagcagcacaaagtaccaacgcaggaattttatacagctggttttctcagcagaagatagtgggaaggttctcaaatacaatcctaggacgaaagaaaccactattcttattcgcaaccttcaatttccaaatggtctgtcactaagcaaggatggttccttctttatattttgcgaaggttccaagggcaggttacgaaagtactggctgaaaggtgagaaagccggtacatcagaggtaatagcaatcctcccgggatatccagacaacgtacgagcaaatgaaagaaatgagttttgggtagcaatccactgtcgtcgtaccatctacagttacataaatggcatataccctcgactccgtcaattcttgctgaagcttcccatctctgcaaagctccaatacctcattcacattggtggcaggttcactgcagttgtcgtgaagtacagccccgagggcaagctgttgcagatattggaagatcgacaagggaaagtcgttagagctgtcagcgaggtagaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgctttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatttaaataaaggtttgatagtggcgtacacagaacttgtttgtaagctaagtcatcatttaaagaagtgtttgataattcagagatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="87317" stop="82368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87018" g_stop="86550" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86549" i_stop="85418" i_length="1132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85417" g_stop="85142" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="746" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85141" i_stop="84068" i_length="1074">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84067" g_stop="83900" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="914" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83899" i_stop="83265" i_length="635">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83264" g_stop="82665" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="915" r_stop="1514" r_length="600" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E745634" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1513</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87018" e_stop="86550"/>
          <exon e_start="85417" e_stop="85142"/>
          <exon e_start="84067" e_stop="83900"/>
          <exon e_start="83264" e_stop="82665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACCTTGTTAGATAGCCAACATTCTTTCACAATTCTTCCTTTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCATGATTTTCCC-TTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAGGTGAGTTTTTGTTTTCCCCCTTTTCCTCTTTAGGTTATGGTTCTTGGTTCAAATTTCTTGTTTGTTGTGATTATGCCTATTTATTATGTTTTTGAGCAGTAGAAATAGGCTCTTGCAGAAATGTAGTGTAAGGCTGCGTACAATTGACCCTTGTGGTTTAGCGAACTCTGCAACATAGCGGGAGCTTTAGTGCACTGGACTTTCCTATTTGGTTGTGTTGTGTTCTCATTATAATGATCTTGTAAAAAAAAAAAGAGGTGTAGTCAAAGGTGGCTTAAGCCCTGAAGTGAGGCGCAAAACATGTTAAGCTCTTCACCTCACTTAGCGCGCGATGCAATGTTGTTATAATGCTACATGTTATTAAGGCATCTCTAATGTTTAAAATGTTATTATTCAAGATTGATGGGCTACTAGAACAGTTGGAAACACGTGCTAATCGTGGCAGCAATACTATGTTAGCTCTAATCATGCGGTTCAATTGCTAAAACCTGTCTGACCAGTGTAGAATTCAATCGTCATCTTCGGGAAATTGCATTACTAGTTAATGTTCTTACCTATTTCTACCTGATTAATTGACTTAAACAGTCGAATGTGGACCATGATGTCAGTGAGAACGGGGTTAAAGAAGGTACAAGATTGAAGCACATTTCAACAATTGTCTTTACTCTACTAAAATTCAGTATACTGCTTTAGGAAGAAAAGCGACACCGTCACATAAACGTGTTTCCTTCTTTATTGTTAAGCCTTTAGGACTGTTGTGGTCTTGTGGAGTATCATTATCAATAAGAATGTTAAAAGGTTGAAGATGATAACGTCCTGCTCGCAGTACTTATTTTGTTTTTCATTACTTTACTTGTGAACTTTGTTTCGTTATTACTTATAATTGGACGATATATTTCCATAATCTGAAATGTTTGTTATCATTTTTTATTAAATACTATTATTCATGTTGAAGCATAACGTTTCTGCTCCACGATCGAATCCTTTACGGCCCAAATTTCAACTTGCTTTGCATATTGTCAGAAATTTTATTTAATTGTGATGTATAAACTAGATTACATGTTTTTCAGACTGTTATCCCCCTAATTATGATTTAGATTTCAAGTCTATTTTCTGTTTTCTGAATTTTTAGGTCAGGCTTGTGTGATCCAAAACCGTCAGCGTTGAGCTATAGGAAGTACGAGCACATCTGTGGTAGGCCTTTGGGGTTACGATTTGACAAAAGAACAGGTGACTTATATATTGCCGATGCATATTTGGGGTTAATGAAGGTAGGCCCTGAAGGTGGATTAGCAGAATCTTTGACAACTGAGGCTGAGGGGGTACCTATAGGATTTGCAAATGACTTGGATGTTGATGATGAAGGGAATGTTTATTTTACGGATAGCAGCACAAAGTACCAACGCAGGTAGATTATGAATGTGCCATTTCTTTTAGTGCTCCAGATTTCTTAACACGTTGATTGGTATAAATTAAAGATTGCGATTCGATCATGATGTGATCTGGAAAATGAGTTTTGTTAAACTGGTGTACTTGTAGGTTATAGTTACATATCATAACTGGACCCTGAACAATTGCTTTCTATTAGCAGAGTGATTTGACTCTCCTGTCTAGTTCATGTCCTCGGTAAATTAAAGGTGCGTTGTCTTGTCTAACCACCTCTCCCAATTCTTCCACTGTCTACGTCTACTTCTCCTTAGGCCTATCATCACCATCCTTTCACACCTCCTCACCGGGGTGCCTGTGCTCCTCTTATTACTTGCTCGAAACCATCTAGCCTTGCTTCCCACATCTTGTCACCCCTAAGGCCATACCCACCTTGCCCATATATCCTCCTTCCTAATTTTGTCTCTCCTAGTATGCACACAGATCCACGTAAGCATCCTCATTTCCGCTACTTTCATTTGCTAGACGTGAGAGTTCTTGAATGGCGAACACTCAACCCCGTACAACATAGTTGGTCTAACAACCACTTCATAAAACTTACCTTTGAGTCTTGGTATTATGTTCTTCGTAGTGCCAAAAAAGGGACGACAAAAGAAATACTTCTTATCAAAATCAACAAAACCTTAATCCTAAACTATTTAGGTTGAGTATATGGATTTTCTACAAAGACAGATGTATATATTCTGCTTTATTCGAGGTCATTTCCTTCCAATACTAGTAATCTTGTTTTTAAAGGGAAATTAGCAGTTTTATAAAGTTAAAGAGACTTAAAAAAAACAATTCTAATGTAAGCCTAAGAATGACTAAGCCTTAATCTCCACTAGTTGTAACATCTTTATGGATTCTTTGTTTATCATTATATATTATTCTTAGCTAAGTTTGCGTCAACACTTGGGGTTCATTTGGTATGATATCTGAATCGTCTTCATTTAGGCTCCAAGATTCTGTGTAATCTTTAAAGTCGATTGCAATTTTTACTAGATCATCTTCAATAGAGAATTTGTTGTGCTTCATTCTCACACTGCTTCCTTTTCAGGAATTTTATACAGCTGGTTTTCTCAGCAGAAGATAGTGGGAAGGTTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAGGTACCGTACTTGCCTTTTGCAATCAGGATGTTTATAGTATTATGATCCAATCATTTATCACTCTGCTTTGATATGCTTTTCCTTGAGTCGAGTGTCTATCAGAAACAACCTCTCTACCTCTCAACGTAGAGGTAAGGTGTGTGGTACGAAATTGTATTGATAATGCAAAAAGTGCCTACAATAACTTGAAATTCGACCCTGGTTTTATGCACTGTTACAATTGTCTATATATGTCCATGTGCATTACAATCTACACCAGAGATACAGACACAAATACTATGCACAGTATGGAACAATGATAGACGTAGAATCATTACGGAGTTTCAGCTTTTATAATACATGTTATGCGATATCTGTATTCATTTCTCCATTTTTTTTCTTAAAACATCTCCTTTATTCCTCACTGCTTTGAAATGCCTTCCCTTGAGCCCTGAGGGTCTATCGGAAACTACCTCTCTACCTACCAAGATAGGGGTAGGGTGTGCGTATACTTTACACTGGTTATGTTGTTGTTGTAAAGCATCTCCTTTTTGTCGAATTGCCTTAAAACCGTTAAAGTGCACATTCAGTTGGATAGTTCCTGTGATGTTATTGCTTACTAGTATTGATAAATGAAACATTTTGCTTTGTTATAGGTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAATGAAACACGA</genome_strand>
        <mrna_strand>GGTACCTTGTTAGATAGCCAACATTCTTTCACAATTCTTCCTTTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCATGATTTTCCCTTTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTGAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGCTTGTGTGATCCAAAACCGTCAGCGTTGAGCTATAGGAAGTACGAGCACATCTGTGGTAGGCCTTTGGGGTTACGATTTGACAAAAGAACAGGTGACTTATATATTGCCGATGCATATTTGGGGTTAATGAAGGTAGGCCCTGAAGGTGGATTAGCAGAATCTTTGACAACTGAGGCTGAGGGGGTACCTATAGGATTTGCAAATGACTTGGATGTTGATGATGAAGGGAATGTTTATTTTACGGATAGCAGCACAAAGTACCAACGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTATACAGCTGGTTTTCTCAGCAGAAGATAGTGGGAAGGTTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217303" ref_strand="+" ref_description="SGN-E217303 [cLEL-21-F16](-)">
      <seq>ctccaatacctcattcacattggtggcaggttcactgcagttgtcgttaagtacagccccgagggcaagctgttgcagatattggaagatcgacaagggaaagtcgttagagctgtcagcgaggtagaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgctttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatttaaataaaggtttgatagtggcgtacacagaacttgtttgtaagctaagtcatcatttaaagaagtgtttgataattcccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="83359" stop="82368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83059" g_stop="82668" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E217303" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83059" e_stop="82668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAATGAAACA</genome_strand>
        <mrna_strand>CTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTTAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217945" ref_strand="+" ref_description="SGN-E217945 [cLEL-23-L3](-)">
      <seq>agttgtcgtgaagtacagccccgagggcaagctgttgcagatattggaagatcgaccaagggaaagtcgttagagctgtcagcgaggtagaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgctttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatttaaataaaggtttgatagtggcgtacacagaacttgtttgtaagctaagtcatcatttaaagaagtgtttgataattcagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="83321" stop="82368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83021" g_stop="82668" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E217945" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83021" e_stop="82668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGA-CAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAATGAAACA</genome_strand>
        <mrna_strand>AGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACCAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218165" ref_strand="+" ref_description="SGN-E218165 [cLEL-23-L3](-)">
      <seq>gtcgtgaagtacagccccgagggcaagctgttgcagatattggaagatcgaacaagggaaagtcgttagagctgtcaacgaggtaaaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgctttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatttaaataaaggtttgatagtggcgtacacagaacttgtttgtaagctaagtcatcctttaaagaagtgtttgataattcagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="83317" stop="82368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83017" g_stop="82668" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E218165" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83017" e_stop="82668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCG-ACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAATGAAACA</genome_strand>
        <mrna_strand>GTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGAACAAGGGAAAGTCGTTAGAGCTGTCAACGAGGTAAAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCCTTTAAAGAAGTGTTTGATAATTCAGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701272" ref_strand="+" ref_description="SGN-E701272 [FA15CA10]">
      <seq>atttcaatagagtgacttggatgttgatgatgaagggaatgtttcttttacggatagcagcacaaagtaccaacgcaggaattttatacagctggttttctcagcagaagatagtgggaaggttctcaaatacaatcctaggacgaaagaaaccactattcttattcgcaaccttcaatttccaaatggtctgtcactaagcaaggatggttccttctttatattttgcgaaggttccaagggcaggttacgaaagtactggctgaaaggtgagaaagccggtacatcagaggtaatagcaatcctcccgggatatccagacaacgtacgagcaaatgaaagaaatgagttttgggtagcaatccactgtcgtcgtaccatctacagttacataaatggcatataccctcgactccgtcaattcttgctgaagcttcccatctctgcaaagctccaatacctcattcacattggtggcaggttcactgcagttgtcgtgaagtacagccccgagggcaagctgttgcagatattggaagatcgacaagggaaagtcgttagagctgtcagcgaggtagaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgcttttgcttttactttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatttaaataaaggtttgatagtggcgtacacagaacttgtttgtaagctaagtcatcatttaaagaagtgtttgataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="85509" stop="82388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85221" g_stop="85142" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85141" i_stop="84068" i_length="1074">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84067" g_stop="83900" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="246" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83899" i_stop="83265" i_length="635">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83264" g_stop="82688" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="835" r_length="589" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E701272" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85221" e_stop="85142"/>
          <exon e_start="84067" e_stop="83900"/>
          <exon e_start="83264" e_stop="82688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGATTTGCAAATGACTTGGATGTTGATGATGAAGGGAATGTTTATTTTACGGATAGCAGCACAAAGTACCAACGCAGGTAGATTATGAATGTGCCATTTCTTTTAGTGCTCCAGATTTCTTAACACGTTGATTGGTATAAATTAAAGATTGCGATTCGATCATGATGTGATCTGGAAAATGAGTTTTGTTAAACTGGTGTACTTGTAGGTTATAGTTACATATCATAACTGGACCCTGAACAATTGCTTTCTATTAGCAGAGTGATTTGACTCTCCTGTCTAGTTCATGTCCTCGGTAAATTAAAGGTGCGTTGTCTTGTCTAACCACCTCTCCCAATTCTTCCACTGTCTACGTCTACTTCTCCTTAGGCCTATCATCACCATCCTTTCACACCTCCTCACCGGGGTGCCTGTGCTCCTCTTATTACTTGCTCGAAACCATCTAGCCTTGCTTCCCACATCTTGTCACCCCTAAGGCCATACCCACCTTGCCCATATATCCTCCTTCCTAATTTTGTCTCTCCTAGTATGCACACAGATCCACGTAAGCATCCTCATTTCCGCTACTTTCATTTGCTAGACGTGAGAGTTCTTGAATGGCGAACACTCAACCCCGTACAACATAGTTGGTCTAACAACCACTTCATAAAACTTACCTTTGAGTCTTGGTATTATGTTCTTCGTAGTGCCAAAAAAGGGACGACAAAAGAAATACTTCTTATCAAAATCAACAAAACCTTAATCCTAAACTATTTAGGTTGAGTATATGGATTTTCTACAAAGACAGATGTATATATTCTGCTTTATTCGAGGTCATTTCCTTCCAATACTAGTAATCTTGTTTTTAAAGGGAAATTAGCAGTTTTATAAAGTTAAAGAGACTTAAAAAAAACAATTCTAATGTAAGCCTAAGAATGACTAAGCCTTAATCTCCACTAGTTGTAACATCTTTATGGATTCTTTGTTTATCATTATATATTATTCTTAGCTAAGTTTGCGTCAACACTTGGGGTTCATTTGGTATGATATCTGAATCGTCTTCATTTAGGCTCCAAGATTCTGTGTAATCTTTAAAGTCGATTGCAATTTTTACTAGATCATCTTCAATAGAGAATTTGTTGTGCTTCATTCTCACACTGCTTCCTTTTCAGGAATTTTATACAGCTGGTTTTCTCAGCAGAAGATAGTGGGAAGGTTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAGGTACCGTACTTGCCTTTTGCAATCAGGATGTTTATAGTATTATGATCCAATCATTTATCACTCTGCTTTGATATGCTTTTCCTTGAGTCGAGTGTCTATCAGAAACAACCTCTCTACCTCTCAACGTAGAGGTAAGGTGTGTGGTACGAAATTGTATTGATAATGCAAAAAGTGCCTACAATAACTTGAAATTCGACCCTGGTTTTATGCACTGTTACAATTGTCTATATATGTCCATGTGCATTACAATCTACACCAGAGATACAGACACAAATACTATGCACAGTATGGAACAATGATAGACGTAGAATCATTACGGAGTTTCAGCTTTTATAATACATGTTATGCGATATCTGTATTCATTTCTCCATTTTTTTTCTTAAAACATCTCCTTTATTCCTCACTGCTTTGAAATGCCTTCCCTTGAGCCCTGAGGGTCTATCGGAAACTACCTCTCTACCTACCAAGATAGGGGTAGGGTGTGCGTATACTTTACACTGGTTATGTTGTTGTTGTAAAGCATCTCCTTTTTGTCGAATTGCCTTAAAACCGTTAAAGTGCACATTCAGTTGGATAGTTCCTGTGATGTTATTGCTTACTAGTATTGATAAATGAAACATTTTGCTTTGTTATAGGTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGA------GCTTTTG------CTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATT</genome_strand>
        <mrna_strand>ATTTCAATAG--AGTGACTTGGATGTTGATGATGAAGGGAATGTTTCTTTTACGGATAGCAGCACAAAGTACCAACGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTATACAGCTGGTTTTCTCAGCAGAAGATAGTGGGAAGGTTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTTGCTTTTACTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687700" ref_strand="+" ref_description="SGN-E687700 [T3_tus_79_I03]">
      <seq>ccttcaaatacaatcctaggacgaaagaaaccactattcttattcgcaaccttcaatttccaaatggtctgtcactaagcaaggatggttccttctttatattttgcgaaggttccaagggcaggttacgaaagtactggctgaaaggtgagaaagccggtacatcagaggtaatagcaatcctcccgggatatccagacaacgtacgagcaaatgaaagaaatgagttttgggtagcaatccactgtcgtcgtaccatctacagttacataaatggcatataccctcgactccgtcaattcttgctgaagcttcccatctctgcaaagctccaatacctcattcacattggtggcaggttcactgcagttgtcgtgaagtacagccccgagggcaagctgttgcagatattggaagatcgacaagggaaagtcgttagagctgtcagcgaggtagaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgctttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatttaaataaaggtttgatagtggcgtacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="84320" stop="82433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84023" g_stop="83900" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83265" i_length="635">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83264" g_stop="82738" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="651" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="665"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E687700" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84023" e_stop="83900"/>
          <exon e_start="83264" e_stop="82738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAGGTACCGTACTTGCCTTTTGCAATCAGGATGTTTATAGTATTATGATCCAATCATTTATCACTCTGCTTTGATATGCTTTTCCTTGAGTCGAGTGTCTATCAGAAACAACCTCTCTACCTCTCAACGTAGAGGTAAGGTGTGTGGTACGAAATTGTATTGATAATGCAAAAAGTGCCTACAATAACTTGAAATTCGACCCTGGTTTTATGCACTGTTACAATTGTCTATATATGTCCATGTGCATTACAATCTACACCAGAGATACAGACACAAATACTATGCACAGTATGGAACAATGATAGACGTAGAATCATTACGGAGTTTCAGCTTTTATAATACATGTTATGCGATATCTGTATTCATTTCTCCATTTTTTTTCTTAAAACATCTCCTTTATTCCTCACTGCTTTGAAATGCCTTCCCTTGAGCCCTGAGGGTCTATCGGAAACTACCTCTCTACCTACCAAGATAGGGGTAGGGTGTGCGTATACTTTACACTGGTTATGTTGTTGTTGTAAAGCATCTCCTTTTTGTCGAATTGCCTTAAAACCGTTAAAGTGCACATTCAGTTGGATAGTTCCTGTGATGTTATTGCTTACTAGTATTGATAAATGAAACATTTTGCTTTGTTATAGGTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACA</genome_strand>
        <mrna_strand>CCTTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687701" ref_strand="+" ref_description="SGN-E687701 [T3_tus_79_I04]">
      <seq>ctttaaaatacaatcctaggacgaaagaaaccactattcttattcgcaaccttcaatttccaaatggtctgtcactaagcaaggatggttccttctttatattttgcgaaggttccaagggcaggttacgaaagtactggctgaaaggtgagaaagccggtacatcagaggtaatagcaatcctcccgggatatccagacaacgtacgagcaaatgaaagaaatgagttttgggtagcaatccactgtcgtcgtaccatctacagttacataaatggcatataccctcgactccgtcaattcttgctgaagcttcccatctctgcaaagctccaatacctcattcacattggtggcaggttcactgcagttgtcgtgaagtacagccccgagggcaagctgttgcagatattggaagatcgacaagggaaagtcgttagagctgtcagcgaggtagaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgctttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatttaaataaaggtttgatagtggcgtacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="84323" stop="82433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84023" g_stop="83900" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83265" i_length="635">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83264" g_stop="82738" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="651" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="664"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E687701" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84023" e_stop="83900"/>
          <exon e_start="83264" e_stop="82738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAGGTACCGTACTTGCCTTTTGCAATCAGGATGTTTATAGTATTATGATCCAATCATTTATCACTCTGCTTTGATATGCTTTTCCTTGAGTCGAGTGTCTATCAGAAACAACCTCTCTACCTCTCAACGTAGAGGTAAGGTGTGTGGTACGAAATTGTATTGATAATGCAAAAAGTGCCTACAATAACTTGAAATTCGACCCTGGTTTTATGCACTGTTACAATTGTCTATATATGTCCATGTGCATTACAATCTACACCAGAGATACAGACACAAATACTATGCACAGTATGGAACAATGATAGACGTAGAATCATTACGGAGTTTCAGCTTTTATAATACATGTTATGCGATATCTGTATTCATTTCTCCATTTTTTTTCTTAAAACATCTCCTTTATTCCTCACTGCTTTGAAATGCCTTCCCTTGAGCCCTGAGGGTCTATCGGAAACTACCTCTCTACCTACCAAGATAGGGGTAGGGTGTGCGTATACTTTACACTGGTTATGTTGTTGTTGTAAAGCATCTCCTTTTTGTCGAATTGCCTTAAAACCGTTAAAGTGCACATTCAGTTGGATAGTTCCTGTGATGTTATTGCTTACTAGTATTGATAAATGAAACATTTTGCTTTGTTATAGGTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACA</genome_strand>
        <mrna_strand>CTTTAAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687697" ref_strand="+" ref_description="SGN-E687697 [T3_tus_79_H22]">
      <seq>ttcaaatacaatcctaggacgaaagaaaccactattcttattcgcaaccttcaatttccaaatggtctgtcactaagcaaggatggttccttctttatattttgcgaaggttccaagggcaggttacgaaagtactggctgaaaggtgagaaagccggtacatcagaggtaatagcaatcctcccgggatatccagacaacgtacgagcaaatgaaagaaatgagttttgggtagcaatccactgtcgtcgtaccatctacagttacataaatggcatataccctcgactccgtcaattcttgctgaagcttcccatctctgcaaagctccaatacctcattcacattggtggcaggttcactgcagttgtcgtgaagtacagccccgagggcaagctgttgcagatattggaagatcgacnagggaaagtcgttagagctgtcagcgaggtagaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgctttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatttaaataaaggtttgatagtggcgtacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="84320" stop="82433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84021" g_stop="83900" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83265" i_length="635">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83264" g_stop="82738" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="649" r_length="527" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="663"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E687697" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84021" e_stop="83900"/>
          <exon e_start="83264" e_stop="82738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAGGTACCGTACTTGCCTTTTGCAATCAGGATGTTTATAGTATTATGATCCAATCATTTATCACTCTGCTTTGATATGCTTTTCCTTGAGTCGAGTGTCTATCAGAAACAACCTCTCTACCTCTCAACGTAGAGGTAAGGTGTGTGGTACGAAATTGTATTGATAATGCAAAAAGTGCCTACAATAACTTGAAATTCGACCCTGGTTTTATGCACTGTTACAATTGTCTATATATGTCCATGTGCATTACAATCTACACCAGAGATACAGACACAAATACTATGCACAGTATGGAACAATGATAGACGTAGAATCATTACGGAGTTTCAGCTTTTATAATACATGTTATGCGATATCTGTATTCATTTCTCCATTTTTTTTCTTAAAACATCTCCTTTATTCCTCACTGCTTTGAAATGCCTTCCCTTGAGCCCTGAGGGTCTATCGGAAACTACCTCTCTACCTACCAAGATAGGGGTAGGGTGTGCGTATACTTTACACTGGTTATGTTGTTGTTGTAAAGCATCTCCTTTTTGTCGAATTGCCTTAAAACCGTTAAAGTGCACATTCAGTTGGATAGTTCCTGTGATGTTATTGCTTACTAGTATTGATAAATGAAACATTTTGCTTTGTTATAGGTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACA</genome_strand>
        <mrna_strand>TTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACNAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323010" ref_strand="+" ref_description="SGN-E323010 [cTOB-30-D16]">
      <seq>tcaaatacaatcctaggacgaaagaaaccactattcttattcgcaaccttcaatttccaaatggtctgtcactaagcaaggatggttccttctttatattttgcgaaggttccaagggcaggttacgaaagtactggctgaaaggtgagaaagccggtacatcagaggtaatagcaatcctcccgggatatccagacaacgtacgagcaaatgaaagaaatgagttttgggtagcaatccactgtcgtcgtaccatctacagttacataaatggcatataccctcgactccgtcaattcttgctgaagcttcccatctctgcaaagctccaatacctcattcacattggtggcaagttcactgcagttgtcgtgaagtacagccccgagggcaagctgttgcagatattggaagatcgacaagggaaagtcgttagagctgtcagcgaggtagaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgctttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="84320" stop="82465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84020" g_stop="83900" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83899" i_stop="83265" i_length="635">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83264" g_stop="82765" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="621" r_length="500" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E323010" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84020" e_stop="83900"/>
          <exon e_start="83264" e_stop="82765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAGGTACCGTACTTGCCTTTTGCAATCAGGATGTTTATAGTATTATGATCCAATCATTTATCACTCTGCTTTGATATGCTTTTCCTTGAGTCGAGTGTCTATCAGAAACAACCTCTCTACCTCTCAACGTAGAGGTAAGGTGTGTGGTACGAAATTGTATTGATAATGCAAAAAGTGCCTACAATAACTTGAAATTCGACCCTGGTTTTATGCACTGTTACAATTGTCTATATATGTCCATGTGCATTACAATCTACACCAGAGATACAGACACAAATACTATGCACAGTATGGAACAATGATAGACGTAGAATCATTACGGAGTTTCAGCTTTTATAATACATGTTATGCGATATCTGTATTCATTTCTCCATTTTTTTTCTTAAAACATCTCCTTTATTCCTCACTGCTTTGAAATGCCTTCCCTTGAGCCCTGAGGGTCTATCGGAAACTACCTCTCTACCTACCAAGATAGGGGTAGGGTGTGCGTATACTTTACACTGGTTATGTTGTTGTTGTAAAGCATCTCCTTTTTGTCGAATTGCCTTAAAACCGTTAAAGTGCACATTCAGTTGGATAGTTCCTGTGATGTTATTGCTTACTAGTATTGATAAATGAAACATTTTGCTTTGTTATAGGTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATT</genome_strand>
        <mrna_strand>TCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAAGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701210" ref_strand="+" ref_description="SGN-E701210 [FA15BD02]">
      <seq>gaagagtattgtgggttggacccttttaagcatagtgcaatttctgagttcccaaattttgagtcttttaaggttgagatgccagcttggtctgaaatcccagttgaaaaagattcacaaaatttgcttcaaaaatctgaagttaagttcttggatcaaattcaggggccagaaagtattgtttttgatcctcagggtagaggaccttatacagggatagctgatggaagagttgtgttttgggatggtgaaaaatggaatgattttgcttatacttcagctaataggtcaggcttgtgtgatccaaaaccgtcagcgttgagctataggaagtacgagcacatctgtggtaggcctttggggttacgatttgacaaaagaacaggtgacttatatattgccgatgcatatttggggttaatgaaggtaggccctaaaggtggattagcagaatctttgacaactgaggctgagggggtacctataggatttgcaaatgacttggatgttgatgatgaagggaatgtttattttacggatagcagcacaaagtaccaacgcaggaattttatacagctggttttctcagcagaagatagtgggaaggttctcaaatacaatcctaggacgaaagaaaccactattcttattcgcaaccttcaatttccaaatggtctgtcactaagcaaggatggttccttctttatattttgcgaaggttccaagggcaggttacgaaagtactggctgaaaggtgagaaagccggtacatcagaggtaatagcaatcctcccgggatatccagacnacgtacgagcaaatgaaagaaatgagttttgggtagcaatccactgtcgtcgtaccatctacagntacataaatggcatatacccctcgactccgtcaatttcttgctgaagcttcccatctctgcaaagctccaatacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="87136" stop="82748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86836" g_stop="86550" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86549" i_stop="85418" i_length="1132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85417" g_stop="85142" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="563" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85141" i_stop="84068" i_length="1074">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84067" g_stop="83900" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="731" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83899" i_stop="83265" i_length="635">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83264" g_stop="83048" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="950" r_length="219" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E701210" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86836" e_stop="86550"/>
          <exon e_start="85417" e_stop="85142"/>
          <exon e_start="84067" e_stop="83900"/>
          <exon e_start="83264" e_stop="83048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAGGTGAGTTTTTGTTTTCCCCCTTTTCCTCTTTAGGTTATGGTTCTTGGTTCAAATTTCTTGTTTGTTGTGATTATGCCTATTTATTATGTTTTTGAGCAGTAGAAATAGGCTCTTGCAGAAATGTAGTGTAAGGCTGCGTACAATTGACCCTTGTGGTTTAGCGAACTCTGCAACATAGCGGGAGCTTTAGTGCACTGGACTTTCCTATTTGGTTGTGTTGTGTTCTCATTATAATGATCTTGTAAAAAAAAAAAGAGGTGTAGTCAAAGGTGGCTTAAGCCCTGAAGTGAGGCGCAAAACATGTTAAGCTCTTCACCTCACTTAGCGCGCGATGCAATGTTGTTATAATGCTACATGTTATTAAGGCATCTCTAATGTTTAAAATGTTATTATTCAAGATTGATGGGCTACTAGAACAGTTGGAAACACGTGCTAATCGTGGCAGCAATACTATGTTAGCTCTAATCATGCGGTTCAATTGCTAAAACCTGTCTGACCAGTGTAGAATTCAATCGTCATCTTCGGGAAATTGCATTACTAGTTAATGTTCTTACCTATTTCTACCTGATTAATTGACTTAAACAGTCGAATGTGGACCATGATGTCAGTGAGAACGGGGTTAAAGAAGGTACAAGATTGAAGCACATTTCAACAATTGTCTTTACTCTACTAAAATTCAGTATACTGCTTTAGGAAGAAAAGCGACACCGTCACATAAACGTGTTTCCTTCTTTATTGTTAAGCCTTTAGGACTGTTGTGGTCTTGTGGAGTATCATTATCAATAAGAATGTTAAAAGGTTGAAGATGATAACGTCCTGCTCGCAGTACTTATTTTGTTTTTCATTACTTTACTTGTGAACTTTGTTTCGTTATTACTTATAATTGGACGATATATTTCCATAATCTGAAATGTTTGTTATCATTTTTTATTAAATACTATTATTCATGTTGAAGCATAACGTTTCTGCTCCACGATCGAATCCTTTACGGCCCAAATTTCAACTTGCTTTGCATATTGTCAGAAATTTTATTTAATTGTGATGTATAAACTAGATTACATGTTTTTCAGACTGTTATCCCCCTAATTATGATTTAGATTTCAAGTCTATTTTCTGTTTTCTGAATTTTTAGGTCAGGCTTGTGTGATCCAAAACCGTCAGCGTTGAGCTATAGGAAGTACGAGCACATCTGTGGTAGGCCTTTGGGGTTACGATTTGACAAAAGAACAGGTGACTTATATATTGCCGATGCATATTTGGGGTTAATGAAGGTAGGCCCTGAAGGTGGATTAGCAGAATCTTTGACAACTGAGGCTGAGGGGGTACCTATAGGATTTGCAAATGACTTGGATGTTGATGATGAAGGGAATGTTTATTTTACGGATAGCAGCACAAAGTACCAACGCAGGTAGATTATGAATGTGCCATTTCTTTTAGTGCTCCAGATTTCTTAACACGTTGATTGGTATAAATTAAAGATTGCGATTCGATCATGATGTGATCTGGAAAATGAGTTTTGTTAAACTGGTGTACTTGTAGGTTATAGTTACATATCATAACTGGACCCTGAACAATTGCTTTCTATTAGCAGAGTGATTTGACTCTCCTGTCTAGTTCATGTCCTCGGTAAATTAAAGGTGCGTTGTCTTGTCTAACCACCTCTCCCAATTCTTCCACTGTCTACGTCTACTTCTCCTTAGGCCTATCATCACCATCCTTTCACACCTCCTCACCGGGGTGCCTGTGCTCCTCTTATTACTTGCTCGAAACCATCTAGCCTTGCTTCCCACATCTTGTCACCCCTAAGGCCATACCCACCTTGCCCATATATCCTCCTTCCTAATTTTGTCTCTCCTAGTATGCACACAGATCCACGTAAGCATCCTCATTTCCGCTACTTTCATTTGCTAGACGTGAGAGTTCTTGAATGGCGAACACTCAACCCCGTACAACATAGTTGGTCTAACAACCACTTCATAAAACTTACCTTTGAGTCTTGGTATTATGTTCTTCGTAGTGCCAAAAAAGGGACGACAAAAGAAATACTTCTTATCAAAATCAACAAAACCTTAATCCTAAACTATTTAGGTTGAGTATATGGATTTTCTACAAAGACAGATGTATATATTCTGCTTTATTCGAGGTCATTTCCTTCCAATACTAGTAATCTTGTTTTTAAAGGGAAATTAGCAGTTTTATAAAGTTAAAGAGACTTAAAAAAAACAATTCTAATGTAAGCCTAAGAATGACTAAGCCTTAATCTCCACTAGTTGTAACATCTTTATGGATTCTTTGTTTATCATTATATATTATTCTTAGCTAAGTTTGCGTCAACACTTGGGGTTCATTTGGTATGATATCTGAATCGTCTTCATTTAGGCTCCAAGATTCTGTGTAATCTTTAAAGTCGATTGCAATTTTTACTAGATCATCTTCAATAGAGAATTTGTTGTGCTTCATTCTCACACTGCTTCCTTTTCAGGAATTTTATACAGCTGGTTTTCTCAGCAGAAGATAGTGGGAAGGTTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAGGTACCGTACTTGCCTTTTGCAATCAGGATGTTTATAGTATTATGATCCAATCATTTATCACTCTGCTTTGATATGCTTTTCCTTGAGTCGAGTGTCTATCAGAAACAACCTCTCTACCTCTCAACGTAGAGGTAAGGTGTGTGGTACGAAATTGTATTGATAATGCAAAAAGTGCCTACAATAACTTGAAATTCGACCCTGGTTTTATGCACTGTTACAATTGTCTATATATGTCCATGTGCATTACAATCTACACCAGAGATACAGACACAAATACTATGCACAGTATGGAACAATGATAGACGTAGAATCATTACGGAGTTTCAGCTTTTATAATACATGTTATGCGATATCTGTATTCATTTCTCCATTTTTTTTCTTAAAACATCTCCTTTATTCCTCACTGCTTTGAAATGCCTTCCCTTGAGCCCTGAGGGTCTATCGGAAACTACCTCTCTACCTACCAAGATAGGGGTAGGGTGTGCGTATACTTTACACTGGTTATGTTGTTGTTGTAAAGCATCTCCTTTTTGTCGAATTGCCTTAAAACCGTTAAAGTGCACATTCAGTTGGATAGTTCCTGTGATGTTATTGCTTACTAGTATTGATAAATGAAACATTTTGCTTTGTTATAGGTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATA-CCCTCGACTCCGTCAA-TTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTC</genome_strand>
        <mrna_strand>GAAGAGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGCTTGTGTGATCCAAAACCGTCAGCGTTGAGCTATAGGAAGTACGAGCACATCTGTGGTAGGCCTTTGGGGTTACGATTTGACAAAAGAACAGGTGACTTATATATTGCCGATGCATATTTGGGGTTAATGAAGGTAGGCCCTAAAGGTGGATTAGCAGAATCTTTGACAACTGAGGCTGAGGGGGTACCTATAGGATTTGCAAATGACTTGGATGTTGATGATGAAGGGAATGTTTATTTTACGGATAGCAGCACAAAGTACCAACGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTATACAGCTGGTTTTCTCAGCAGAAGATAGTGGGAAGGTTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACNACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGNTACATAAATGGCATATACCCCTCGACTCCGTCAATTTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710381" ref_strand="+" ref_description="SGN-E710381 [FA55BA07]">
      <seq>attttgagtcttttaaggttgagatgccagcttggtctgaaatcccagttgaaaaagattcacaaaatttgcttcaaaaatctgaagttaagttcttggatcaaattcaggggccagaaagtattgtttttgatcctcagggtagaggaccttatacagggatagctgatggaagagttgtgttttgggatggtgaaaaatggaatgattttgcttatacttcagctaataggtcaggcttgtgtgatccaaaaccgtcagcgttgagctataggaagtacgagcacatctgtggtaggcctttggggttacgatttgacaaaagaacaggtgacttatatattgccgatgcatatttggggttaatgaaggtaggccctaaaggtggattagcagaatctttgacaactgaggctgagggggtacctataggatttgcaaatgacttggatgttgatgatgaagggaatgtttattttacggatagcagcacaaagtaccaacgcaggaattttatacagctggttttctcagcagaagatagtgggaaggttctcaaatacaatcctaggacgaaagaaaccactattcttattcgcaaccttcaatttccaaatggtctgtcactaagcaaggatggttccttctttatattttgcgaaggttccaagggcaggttacgaaagtactggctgaaaggtgagaaagccggtacatcagaggtaatagcaatcctcccgggatatccagacaacgtacgagcaaatgaaagaaatgagttttgggtagcaatccactgtcgtcgtaccatctacagttacataaatggcatataccctcgactccgtcaattcttgctgaagcttcccatctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="87081" stop="82764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86781" g_stop="86550" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86549" i_stop="85418" i_length="1132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85417" g_stop="85142" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="508" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85141" i_stop="84068" i_length="1074">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84067" g_stop="83900" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="676" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83899" i_stop="83265" i_length="635">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83264" g_stop="83064" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="877" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E710381" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86781" e_stop="86550"/>
          <exon e_start="85417" e_stop="85142"/>
          <exon e_start="84067" e_stop="83900"/>
          <exon e_start="83264" e_stop="83064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAGGTGAGTTTTTGTTTTCCCCCTTTTCCTCTTTAGGTTATGGTTCTTGGTTCAAATTTCTTGTTTGTTGTGATTATGCCTATTTATTATGTTTTTGAGCAGTAGAAATAGGCTCTTGCAGAAATGTAGTGTAAGGCTGCGTACAATTGACCCTTGTGGTTTAGCGAACTCTGCAACATAGCGGGAGCTTTAGTGCACTGGACTTTCCTATTTGGTTGTGTTGTGTTCTCATTATAATGATCTTGTAAAAAAAAAAAGAGGTGTAGTCAAAGGTGGCTTAAGCCCTGAAGTGAGGCGCAAAACATGTTAAGCTCTTCACCTCACTTAGCGCGCGATGCAATGTTGTTATAATGCTACATGTTATTAAGGCATCTCTAATGTTTAAAATGTTATTATTCAAGATTGATGGGCTACTAGAACAGTTGGAAACACGTGCTAATCGTGGCAGCAATACTATGTTAGCTCTAATCATGCGGTTCAATTGCTAAAACCTGTCTGACCAGTGTAGAATTCAATCGTCATCTTCGGGAAATTGCATTACTAGTTAATGTTCTTACCTATTTCTACCTGATTAATTGACTTAAACAGTCGAATGTGGACCATGATGTCAGTGAGAACGGGGTTAAAGAAGGTACAAGATTGAAGCACATTTCAACAATTGTCTTTACTCTACTAAAATTCAGTATACTGCTTTAGGAAGAAAAGCGACACCGTCACATAAACGTGTTTCCTTCTTTATTGTTAAGCCTTTAGGACTGTTGTGGTCTTGTGGAGTATCATTATCAATAAGAATGTTAAAAGGTTGAAGATGATAACGTCCTGCTCGCAGTACTTATTTTGTTTTTCATTACTTTACTTGTGAACTTTGTTTCGTTATTACTTATAATTGGACGATATATTTCCATAATCTGAAATGTTTGTTATCATTTTTTATTAAATACTATTATTCATGTTGAAGCATAACGTTTCTGCTCCACGATCGAATCCTTTACGGCCCAAATTTCAACTTGCTTTGCATATTGTCAGAAATTTTATTTAATTGTGATGTATAAACTAGATTACATGTTTTTCAGACTGTTATCCCCCTAATTATGATTTAGATTTCAAGTCTATTTTCTGTTTTCTGAATTTTTAGGTCAGGCTTGTGTGATCCAAAACCGTCAGCGTTGAGCTATAGGAAGTACGAGCACATCTGTGGTAGGCCTTTGGGGTTACGATTTGACAAAAGAACAGGTGACTTATATATTGCCGATGCATATTTGGGGTTAATGAAGGTAGGCCCTGAAGGTGGATTAGCAGAATCTTTGACAACTGAGGCTGAGGGGGTACCTATAGGATTTGCAAATGACTTGGATGTTGATGATGAAGGGAATGTTTATTTTACGGATAGCAGCACAAAGTACCAACGCAGGTAGATTATGAATGTGCCATTTCTTTTAGTGCTCCAGATTTCTTAACACGTTGATTGGTATAAATTAAAGATTGCGATTCGATCATGATGTGATCTGGAAAATGAGTTTTGTTAAACTGGTGTACTTGTAGGTTATAGTTACATATCATAACTGGACCCTGAACAATTGCTTTCTATTAGCAGAGTGATTTGACTCTCCTGTCTAGTTCATGTCCTCGGTAAATTAAAGGTGCGTTGTCTTGTCTAACCACCTCTCCCAATTCTTCCACTGTCTACGTCTACTTCTCCTTAGGCCTATCATCACCATCCTTTCACACCTCCTCACCGGGGTGCCTGTGCTCCTCTTATTACTTGCTCGAAACCATCTAGCCTTGCTTCCCACATCTTGTCACCCCTAAGGCCATACCCACCTTGCCCATATATCCTCCTTCCTAATTTTGTCTCTCCTAGTATGCACACAGATCCACGTAAGCATCCTCATTTCCGCTACTTTCATTTGCTAGACGTGAGAGTTCTTGAATGGCGAACACTCAACCCCGTACAACATAGTTGGTCTAACAACCACTTCATAAAACTTACCTTTGAGTCTTGGTATTATGTTCTTCGTAGTGCCAAAAAAGGGACGACAAAAGAAATACTTCTTATCAAAATCAACAAAACCTTAATCCTAAACTATTTAGGTTGAGTATATGGATTTTCTACAAAGACAGATGTATATATTCTGCTTTATTCGAGGTCATTTCCTTCCAATACTAGTAATCTTGTTTTTAAAGGGAAATTAGCAGTTTTATAAAGTTAAAGAGACTTAAAAAAAACAATTCTAATGTAAGCCTAAGAATGACTAAGCCTTAATCTCCACTAGTTGTAACATCTTTATGGATTCTTTGTTTATCATTATATATTATTCTTAGCTAAGTTTGCGTCAACACTTGGGGTTCATTTGGTATGATATCTGAATCGTCTTCATTTAGGCTCCAAGATTCTGTGTAATCTTTAAAGTCGATTGCAATTTTTACTAGATCATCTTCAATAGAGAATTTGTTGTGCTTCATTCTCACACTGCTTCCTTTTCAGGAATTTTATACAGCTGGTTTTCTCAGCAGAAGATAGTGGGAAGGTTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAGGTACCGTACTTGCCTTTTGCAATCAGGATGTTTATAGTATTATGATCCAATCATTTATCACTCTGCTTTGATATGCTTTTCCTTGAGTCGAGTGTCTATCAGAAACAACCTCTCTACCTCTCAACGTAGAGGTAAGGTGTGTGGTACGAAATTGTATTGATAATGCAAAAAGTGCCTACAATAACTTGAAATTCGACCCTGGTTTTATGCACTGTTACAATTGTCTATATATGTCCATGTGCATTACAATCTACACCAGAGATACAGACACAAATACTATGCACAGTATGGAACAATGATAGACGTAGAATCATTACGGAGTTTCAGCTTTTATAATACATGTTATGCGATATCTGTATTCATTTCTCCATTTTTTTTCTTAAAACATCTCCTTTATTCCTCACTGCTTTGAAATGCCTTCCCTTGAGCCCTGAGGGTCTATCGGAAACTACCTCTCTACCTACCAAGATAGGGGTAGGGTGTGCGTATACTTTACACTGGTTATGTTGTTGTTGTAAAGCATCTCCTTTTTGTCGAATTGCCTTAAAACCGTTAAAGTGCACATTCAGTTGGATAGTTCCTGTGATGTTATTGCTTACTAGTATTGATAAATGAAACATTTTGCTTTGTTATAGGTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGC</genome_strand>
        <mrna_strand>ATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGCTTGTGTGATCCAAAACCGTCAGCGTTGAGCTATAGGAAGTACGAGCACATCTGTGGTAGGCCTTTGGGGTTACGATTTGACAAAAGAACAGGTGACTTATATATTGCCGATGCATATTTGGGGTTAATGAAGGTAGGCCCTAAAGGTGGATTAGCAGAATCTTTGACAACTGAGGCTGAGGGGGTACCTATAGGATTTGCAAATGACTTGGATGTTGATGATGAAGGGAATGTTTATTTTACGGATAGCAGCACAAAGTACCAACGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTATACAGCTGGTTTTCTCAGCAGAAGATAGTGGGAAGGTTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321448" ref_strand="+" ref_description="SGN-E321448 [cTOB-23-O6]">
      <seq>accactctattattttttcaagaaaatttttcattgtaccttgttagatagccaacattctttcacaattcttccttttggggtatactataattccaaaattttcaaccccatttcatgattttccctttactcaaaccccattatcataaagtttcaatttttatcaagaaaatgagagcagtttcagtatttggtggtgtgttccttgtgttggcagtgtattgtgggttggacccttttaagcatagtgcaatttctgagttcccaaattttgagtcttttaaggttgagatgccagcttggtctgaaatcccagttgaaaaagattcacaaaatttgcttcaaaaatctgaagttaagttcttggatcaaattcaggggccagaaagtattgtttttgatcctcagggtagaggaccttatacagggatagctgatggaagagttgtgttttgggatggtgaaaaatggaatgattttgcttatacttcagctaataggtcaggcttgtgtgatcaaaaaccgtcagcgttgagctataggaagtacgaacacatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="87352" stop="85058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87052" g_stop="86550" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86549" i_stop="85418" i_length="1132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85417" g_stop="85358" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="563" r_length="60" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E321448" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87052" e_stop="86550"/>
          <exon e_start="85417" e_stop="85358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTCTATTATTTTTTCAAGAAAATTTTTCATTGTACCTTGTTAGATAGCCAACATTCTTTCACAATTCTTCCTTTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCATGATTTTCCCTTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAGGTGAGTTTTTGTTTTCCCCCTTTTCCTCTTTAGGTTATGGTTCTTGGTTCAAATTTCTTGTTTGTTGTGATTATGCCTATTTATTATGTTTTTGAGCAGTAGAAATAGGCTCTTGCAGAAATGTAGTGTAAGGCTGCGTACAATTGACCCTTGTGGTTTAGCGAACTCTGCAACATAGCGGGAGCTTTAGTGCACTGGACTTTCCTATTTGGTTGTGTTGTGTTCTCATTATAATGATCTTGTAAAAAAAAAAAGAGGTGTAGTCAAAGGTGGCTTAAGCCCTGAAGTGAGGCGCAAAACATGTTAAGCTCTTCACCTCACTTAGCGCGCGATGCAATGTTGTTATAATGCTACATGTTATTAAGGCATCTCTAATGTTTAAAATGTTATTATTCAAGATTGATGGGCTACTAGAACAGTTGGAAACACGTGCTAATCGTGGCAGCAATACTATGTTAGCTCTAATCATGCGGTTCAATTGCTAAAACCTGTCTGACCAGTGTAGAATTCAATCGTCATCTTCGGGAAATTGCATTACTAGTTAATGTTCTTACCTATTTCTACCTGATTAATTGACTTAAACAGTCGAATGTGGACCATGATGTCAGTGAGAACGGGGTTAAAGAAGGTACAAGATTGAAGCACATTTCAACAATTGTCTTTACTCTACTAAAATTCAGTATACTGCTTTAGGAAGAAAAGCGACACCGTCACATAAACGTGTTTCCTTCTTTATTGTTAAGCCTTTAGGACTGTTGTGGTCTTGTGGAGTATCATTATCAATAAGAATGTTAAAAGGTTGAAGATGATAACGTCCTGCTCGCAGTACTTATTTTGTTTTTCATTACTTTACTTGTGAACTTTGTTTCGTTATTACTTATAATTGGACGATATATTTCCATAATCTGAAATGTTTGTTATCATTTTTTATTAAATACTATTATTCATGTTGAAGCATAACGTTTCTGCTCCACGATCGAATCCTTTACGGCCCAAATTTCAACTTGCTTTGCATATTGTCAGAAATTTTATTTAATTGTGATGTATAAACTAGATTACATGTTTTTCAGACTGTTATCCCCCTAATTATGATTTAGATTTCAAGTCTATTTTCTGTTTTCTGAATTTTTAGGTCAGGCTTGTGTGATCCAAAACCGTCAGCGTTGAGCTATAGGAAGTACGAGCACATCTG</genome_strand>
        <mrna_strand>ACCACTCTATTATTTTTTCAAGAAAATTTTTCATTGTACCTTGTTAGATAGCCAACATTCTTTCACAATTCTTCCTTTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCATGATTTTCCCTTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGCTTGTGTGATCAAAAACCGTCAGCGTTGAGCTATAGGAAGTACGAACACATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325297" ref_strand="+" ref_description="SGN-E325297 [cTOC-1-H21]">
      <seq>tttcacaattcttccttttggggtatactataattccaaaattttcaaccccatttcatgattttccctttactcaaaccccattatcataaagtttcaatttttatcaagaaaatgagagcagtttcagtatttggtggtgtgttccttgtgttggcagtgtattgtgggttggacccttttaagcatagtgcaatttctgagttcccaaattttgagtcttttaaggttgagatgccagcttggtctgaaatcccagttgaaaaagattcacaaaatttgcttcaaaaatctgaagttaagttcttggatcaaattcaggggccagaaagtattgtttttgatcctcagggtagaggaccttatacagggatagctgatggaagagttgtgttttgggatggtgaaaaatggaatgattttgcttatacttcagctaataggtcaggcttgtgtgatccaaaaccgtcagcgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="87292" stop="85083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86992" g_stop="86550" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86549" i_stop="85418" i_length="1132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85417" g_stop="85383" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="478" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E325297" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86992" e_stop="86550"/>
          <exon e_start="85417" e_stop="85383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACAATTCTTCCTTTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCATGATTTTCCCTTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAGGTGAGTTTTTGTTTTCCCCCTTTTCCTCTTTAGGTTATGGTTCTTGGTTCAAATTTCTTGTTTGTTGTGATTATGCCTATTTATTATGTTTTTGAGCAGTAGAAATAGGCTCTTGCAGAAATGTAGTGTAAGGCTGCGTACAATTGACCCTTGTGGTTTAGCGAACTCTGCAACATAGCGGGAGCTTTAGTGCACTGGACTTTCCTATTTGGTTGTGTTGTGTTCTCATTATAATGATCTTGTAAAAAAAAAAAGAGGTGTAGTCAAAGGTGGCTTAAGCCCTGAAGTGAGGCGCAAAACATGTTAAGCTCTTCACCTCACTTAGCGCGCGATGCAATGTTGTTATAATGCTACATGTTATTAAGGCATCTCTAATGTTTAAAATGTTATTATTCAAGATTGATGGGCTACTAGAACAGTTGGAAACACGTGCTAATCGTGGCAGCAATACTATGTTAGCTCTAATCATGCGGTTCAATTGCTAAAACCTGTCTGACCAGTGTAGAATTCAATCGTCATCTTCGGGAAATTGCATTACTAGTTAATGTTCTTACCTATTTCTACCTGATTAATTGACTTAAACAGTCGAATGTGGACCATGATGTCAGTGAGAACGGGGTTAAAGAAGGTACAAGATTGAAGCACATTTCAACAATTGTCTTTACTCTACTAAAATTCAGTATACTGCTTTAGGAAGAAAAGCGACACCGTCACATAAACGTGTTTCCTTCTTTATTGTTAAGCCTTTAGGACTGTTGTGGTCTTGTGGAGTATCATTATCAATAAGAATGTTAAAAGGTTGAAGATGATAACGTCCTGCTCGCAGTACTTATTTTGTTTTTCATTACTTTACTTGTGAACTTTGTTTCGTTATTACTTATAATTGGACGATATATTTCCATAATCTGAAATGTTTGTTATCATTTTTTATTAAATACTATTATTCATGTTGAAGCATAACGTTTCTGCTCCACGATCGAATCCTTTACGGCCCAAATTTCAACTTGCTTTGCATATTGTCAGAAATTTTATTTAATTGTGATGTATAAACTAGATTACATGTTTTTCAGACTGTTATCCCCCTAATTATGATTTAGATTTCAAGTCTATTTTCTGTTTTCTGAATTTTTAGGTCAGGCTTGTGTGATCCAAAACCGTCAGCGTTGA</genome_strand>
        <mrna_strand>TTTCACAATTCTTCCTTTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCATGATTTTCCCTTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGCTTGTGTGATCCAAAACCGTCAGCGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271112" ref_strand="+" ref_description="SGN-E271112 [cLEM-22-D21]">
      <seq>tttcacaattcttccttttggggtatactataattccaaaattttcaaccccatttcatgattttccctttactcaaaccccattatcataaagtttcaatttttatcaagaaaatgagagcagtttcagtatttggtggtgtgttccttgtgttggcagtgtattgtgggttggacccttttaagcatagtgcaatttctgagttcccaaattttgagtcttttaaggttgagatgccagcttggtctgaaatcccagttgaaaaagattcacaaaatttgcttcaaaaatctgaagttaagttcttggatcaaattcaggggccagaaagtattgtttttgatcctcagggtagaggaccttatacagggatagctgatggaagagttgtgttttgggatggtgaaaaatggaatgattttgcttatacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="87292" stop="86258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86992" g_stop="86558" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E271112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86992" e_stop="86558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACAATTCTTCCTTTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCATGATTTTCCCTTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCA</genome_strand>
        <mrna_strand>TTTCACAATTCTTCCTTTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCATGATTTTCCCTTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365988" ref_strand="+" ref_description="SGN-E365988 [cLPT-11-F23]">
      <seq>accactctattatttttttcaagaaaatttttcattgtaccttgttagatagccaacattctttcacaattcttctatttggggtatactataattccaaaattttcaaccccatttcaagattttccctttactcaaaccccattatcataaagtttcaatttttatcaagaaaatgagagcagtttcagtatttggtggtgtgttccttgtgttggcagtgtattgtgggttggacccttttaagcatagtgcaatttctgagttcccaaattttgagtcttttaaggttgagatgccagcttggtctgaaatcccaggtgaaaaagattcacaaaatttgcttcagaaatctgaagttaagttcttggatcaaattcaggggccagaaagtattgtttttgatcctcagggtagaggaccttatacagggatagctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="87352" stop="86311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87052" g_stop="86611" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E365988" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87052" e_stop="86611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTCTATTATTTTT-TCAAGAAAATTTTTCATTGTACCTTGTTAGATAGCCAACATTCTTTCACAATTCTTCCTTTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCATGATTTTCCCTTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATG</genome_strand>
        <mrna_strand>ACCACTCTATTATTTTTTTCAAGAAAATTTTTCATTGTACCTTGTTAGATAGCCAACATTCTTTCACAATTCTTCTATTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCAAGATTTTCCCTTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGGTGAAAAAGATTCACAAAATTTGCTTCAGAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230803" ref_strand="+" ref_description="SGN-E230803 [cLEL-35-A10](-)">
      <seq>aaatcccttcgattcgtccaccagagaaaagacaacgtgttccttctgcgtacaaccgtttcatcaaggaagagattcaaaggatcaaggccagtaatcctgatattagccatcgtgaagcttttagcactgctgccaaaaattgggcacattttccacatattcactttggactcaagctggagggcaacaaatagcgagggaaaaaaaactttaatatatgatatatacatatatatatatgcatgtcttttatgttgttttcgtcgaagatttatcaaaaataatgtttttattttttaaaaattactttttttttagattttatttataaaaatatgctgaatatgttattattattattgtcctcgtcttaatattattttcagagttgtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="93873" stop="90973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93573" g_stop="93525" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="67" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93524" i_stop="93271" i_length="254">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93270" g_stop="93195" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="143" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93194" i_stop="91529" i_length="1666">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91528" g_stop="91273" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="399" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="413"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E230803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93573" e_stop="93525"/>
          <exon e_start="93270" e_stop="93195"/>
          <exon e_start="91528" e_stop="91273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGAGAAAAGACAACGTGTTCCTTCTGCGTACAACCGATTCATCAAGTAAGTTTTTTTTTCTTCCAGTAGATATTATGATGTTAATTTATTAATTCGCATTTAGAAATTTTAAATTTATGTATTTTTGAGATCAAATGTACTAAGTTCTACGTAATTCGAAAATCCGTCCATATTTAGTTACCCCTCTCTTGCCACCGAAAATTTGCAATATATTTATATTTACTGAGATCAAAAATATATATTTAAAATACCGATCGCATATTTTTTGCGCTATATTATTATGTTTCGAATGTGTATAGGGAAGAGATTCAAAGGATCAAGGCCAGTAATCCTGATATTAGCCATCGTGAAGCTTTTAGCACTGCTGCCAAAAATGTAAGTCCTCTCTTAATCAAAAATCTCGAGATTACACTGTGAAAATAATAAAAAAAAATATTGTTTTCGTTAGTATACCTAACACAATGAAAATGGAAACTAATATGGATACCTAGAAGGAGTTAAGCATGGGAAAAAGCGGGAGAGTCTTTTTAAGTTGATGACTTTTTGAATGATCGTGTGTTTAATTTACTTTTTTATGTCTTAAATCAGATTAAATTATGAAAATAAGAAAAAAGAATCTTTAGTAAAAAGCGTTTTTCTCGTTAGTAGACCTTACACAATGAAAATGAAAACTATGAATACCTACAAGGAGTTAAGCATGGGAAATAGCGGGAGTGTCTTTTTAAGTTGATGACTTTTTGAACGATTTTGCGTTTAATTTACTTTTTTTTATGTCTTGAATCTTTTAGGTAAAAATCTTACTTTGCATGTGATATAATACTAATTATATATCGTTTGAACTATAATTCTAGGCTTTCATATTTCAACTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGGTGTTGAATTGTCCAAATGTTTGTCGATAAACGTGCGTCTATTTTTAACCATTTATTCATCAAAATAATAATTTTAAACGTATTTTTAATCGTTAATTCAGACAAATAATAAAACAACAAAAGAAATGAAAATAACTTGAACTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTAGTGTTGAGTTGTCCAAATGTTTGTCGATAAATGTGCGTCTATTTTTGGCCATTTGTTGATCAAAATAATAATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAATAAAACAATAAAAGAAATGAAAATAACTTGAATTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGATGTTGTAATATATACTTCTGATATTGAATTGTCCAAATGTTTGTTGATAAACATGCGTCTATTTTTGGCCATTTTTATTCATCAAAATAATAATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAATAAAATAATAAAAGAAATGAAAATAACTTGAACTATATATTATTTCTATAATTTATCTAAATTAATATTTTCTTTGTATTAAAATATATTTTTGATGTTGAGTTGTCCAAATGTTTGTCGATAAACGTGAGTCTACTTTTGGCCATTTATTCATCGAAATAATAATTTTAAACGTATTTTTAATCGTTAATTCAAACAAATAATAAAACAATAAAAGAAAAGAAAATTACTTGCACTATACATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGATGTTGAGTTGTTTAAATATTTATCAATAGACGTGCGTTTATTTTTGGCCATTTATTCATGATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAACAAAACAATAAAAGAAATGAAAATAACTTGTTGCATGTGGAATTTTTTGAATGTTCACAAAAGAAAAATTATGGTAGGGACAAACAAGAATGACCACTAAAATAGAAGAAATTAAAAAAGAGAAAAATATATTTTTCAAGATTTTATCTTTTATTTTAATTTTTTGCTATTTTTGCAGTGGGCACATTTTCCACATATTCACTTTGGACTCAAGCTGGAGGGCAACAAATAGCGAGGGAAAAAAAACTTTAATATATGATATATACATATATATATATGCATGTCTTTTATGTTGTTTTCGTCGAAGATTTATCAAAAATAATGTTTTTATTTTTTAAAAATTACTTTTTTTTTAGATTTTATTTATAAAAATATGCTGAATATGTTATTATTATTATTGTCCTCGTCTTAATATTATTTTCAGAGTTGTGAAA</genome_strand>
        <mrna_strand>CACCAGAGAAAAGACAACGTGTTCCTTCTGCGTACAACCGTTTCATCAA..............................................................................................................................................................................................................................................................GGAAGAGATTCAAAGGATCAAGGCCAGTAATCCTGATATTAGCCATCGTGAAGCTTTTAGCACTGCTGCCAAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTTCCACATATTCACTTTGGACTCAAGCTGGAGGGCAACAAATAGCGAGGGAAAAAAAACTTTAATATATGATATATACATATATATATATGCATGTCTTTTATGTTGTTTTCGTCGAAGATTTATCAAAAATAATGTTTTTATTTTTTAAAAATTACTTTTTTTTTAGATTTTATTTATAAAAATATGCTGAATATGTTATTATTATTATTGTCCTCGTCTTAATATTATTTTCAGAGTTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230439" ref_strand="+" ref_description="SGN-E230439 [cLEL-35-A10](-)">
      <seq>acgtgttccttctgcgtacanccgattcatcaaggaagagattcaaaggatcaaggccagtaatcctgatattagccatcgtgaagcttttagcactgctgccaaaaattgggcacattttccacatattcactttggactcaagctggagggcaacaaatagcgagggaaaaaaaactttaatatatgatatatacatatatatatatgcatgtcttttatgttgttttcgtcgaagatttatcaaaaataatgtttttattttttaaaaattactttttttttagattttatttataaaaatatgctgaatatgttattattattattgtcctcgtcttaatattattttcagagttgtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="93857" stop="90973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93557" g_stop="93525" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93524" i_stop="93271" i_length="254">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93270" g_stop="93195" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="109" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93194" i_stop="91529" i_length="1666">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91528" g_stop="91273" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="365" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="379"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E230439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93557" e_stop="93525"/>
          <exon e_start="93270" e_stop="93195"/>
          <exon e_start="91528" e_stop="91273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTGTTCCTTCTGCGTACAACCGATTCATCAAGTAAGTTTTTTTTTCTTCCAGTAGATATTATGATGTTAATTTATTAATTCGCATTTAGAAATTTTAAATTTATGTATTTTTGAGATCAAATGTACTAAGTTCTACGTAATTCGAAAATCCGTCCATATTTAGTTACCCCTCTCTTGCCACCGAAAATTTGCAATATATTTATATTTACTGAGATCAAAAATATATATTTAAAATACCGATCGCATATTTTTTGCGCTATATTATTATGTTTCGAATGTGTATAGGGAAGAGATTCAAAGGATCAAGGCCAGTAATCCTGATATTAGCCATCGTGAAGCTTTTAGCACTGCTGCCAAAAATGTAAGTCCTCTCTTAATCAAAAATCTCGAGATTACACTGTGAAAATAATAAAAAAAAATATTGTTTTCGTTAGTATACCTAACACAATGAAAATGGAAACTAATATGGATACCTAGAAGGAGTTAAGCATGGGAAAAAGCGGGAGAGTCTTTTTAAGTTGATGACTTTTTGAATGATCGTGTGTTTAATTTACTTTTTTATGTCTTAAATCAGATTAAATTATGAAAATAAGAAAAAAGAATCTTTAGTAAAAAGCGTTTTTCTCGTTAGTAGACCTTACACAATGAAAATGAAAACTATGAATACCTACAAGGAGTTAAGCATGGGAAATAGCGGGAGTGTCTTTTTAAGTTGATGACTTTTTGAACGATTTTGCGTTTAATTTACTTTTTTTTATGTCTTGAATCTTTTAGGTAAAAATCTTACTTTGCATGTGATATAATACTAATTATATATCGTTTGAACTATAATTCTAGGCTTTCATATTTCAACTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGGTGTTGAATTGTCCAAATGTTTGTCGATAAACGTGCGTCTATTTTTAACCATTTATTCATCAAAATAATAATTTTAAACGTATTTTTAATCGTTAATTCAGACAAATAATAAAACAACAAAAGAAATGAAAATAACTTGAACTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTAGTGTTGAGTTGTCCAAATGTTTGTCGATAAATGTGCGTCTATTTTTGGCCATTTGTTGATCAAAATAATAATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAATAAAACAATAAAAGAAATGAAAATAACTTGAATTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGATGTTGTAATATATACTTCTGATATTGAATTGTCCAAATGTTTGTTGATAAACATGCGTCTATTTTTGGCCATTTTTATTCATCAAAATAATAATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAATAAAATAATAAAAGAAATGAAAATAACTTGAACTATATATTATTTCTATAATTTATCTAAATTAATATTTTCTTTGTATTAAAATATATTTTTGATGTTGAGTTGTCCAAATGTTTGTCGATAAACGTGAGTCTACTTTTGGCCATTTATTCATCGAAATAATAATTTTAAACGTATTTTTAATCGTTAATTCAAACAAATAATAAAACAATAAAAGAAAAGAAAATTACTTGCACTATACATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGATGTTGAGTTGTTTAAATATTTATCAATAGACGTGCGTTTATTTTTGGCCATTTATTCATGATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAACAAAACAATAAAAGAAATGAAAATAACTTGTTGCATGTGGAATTTTTTGAATGTTCACAAAAGAAAAATTATGGTAGGGACAAACAAGAATGACCACTAAAATAGAAGAAATTAAAAAAGAGAAAAATATATTTTTCAAGATTTTATCTTTTATTTTAATTTTTTGCTATTTTTGCAGTGGGCACATTTTCCACATATTCACTTTGGACTCAAGCTGGAGGGCAACAAATAGCGAGGGAAAAAAAACTTTAATATATGATATATACATATATATATATGCATGTCTTTTATGTTGTTTTCGTCGAAGATTTATCAAAAATAATGTTTTTATTTTTTAAAAATTACTTTTTTTTTAGATTTTATTTATAAAAATATGCTGAATATGTTATTATTATTATTGTCCTCGTCTTAATATTATTTTCAGAGTTGTGAAA</genome_strand>
        <mrna_strand>ACGTGTTCCTTCTGCGTACANCCGATTCATCAA..............................................................................................................................................................................................................................................................GGAAGAGATTCAAAGGATCAAGGCCAGTAATCCTGATATTAGCCATCGTGAAGCTTTTAGCACTGCTGCCAAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTTCCACATATTCACTTTGGACTCAAGCTGGAGGGCAACAAATAGCGAGGGAAAAAAAACTTTAATATATGATATATACATATATATATATGCATGTCTTTTATGTTGTTTTCGTCGAAGATTTATCAAAAATAATGTTTTTATTTTTTAAAAATTACTTTTTTTTTAGATTTTATTTATAAAAATATGCTGAATATGTTATTATTATTATTGTCCTCGTCTTAATATTATTTTCAGAGTTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720499" ref_strand="+" ref_description="SGN-E720499 [FC11AA02]">
      <seq>gggcgattggcggcaaatcggccgaattcccatggggatccgatgacaatccttttgcttcaatttgtatacaaacttaccttatattatatatgcatactatatatacatatgtatttcttcttcactcttcccctttgatccatgttctataggtcaataacctaaaaaaaaaaaacaattaattataaatataaaatgtcattcgatatgattttttcttcttcaccttcctcaaaacgcgtttgttacttgcaatgtaatttttgcaacaccattcttgcggttagtgttccatgcagcaacatgttaaccttagtgacagtaaaatgtgggcattgtgcaaatatgctttctgttaatattggatctttaattcaagctctaccccttcaaaatgttcaaaagctgcaaaggcaacagtacacaaatgttgaaaataattctagtaattataaagcttatggttcatcatcatcatcctcttcaaagttcaacaaatattcttccattgtttctcctcaaattgaacctaaaatcccttcaattcgtccaccaaaaaaaaaacaacgtgttccttctgcgtacaaccaattcatcaaggaaaaaattcaaaggatcaaggccagtaatcctgatattacccatcgtgaagcttttaccactgctgccaaaaattgggcacattttccacatattcactttggactcaagctggagggcaacaaatagtgaggggaaaaaaactttaatatatgatatatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="98113" stop="91137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97809" g_stop="97575" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="285" r_length="238" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97574" i_stop="95663" i_length="1912">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95662" g_stop="95543" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="405" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95542" i_stop="94924" i_length="619">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94923" g_stop="94776" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="553" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94775" i_stop="93574" i_length="1202">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93573" g_stop="93525" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="602" r_length="49" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93524" i_stop="93271" i_length="254">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93270" g_stop="93195" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="678" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93194" i_stop="91529" i_length="1666">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91528" g_stop="91437" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="770" r_length="92" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E720499" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97809" e_stop="97575"/>
          <exon e_start="95662" e_stop="95543"/>
          <exon e_start="94923" e_stop="94776"/>
          <exon e_start="93573" e_stop="93525"/>
          <exon e_start="93270" e_stop="93195"/>
          <exon e_start="91528" e_stop="91437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTTTTGCTTCAATTTGTATACAAACTTACCTTATATTATATATGCATACTATATATACATATGTATTTCTTCTTCACTCTTCCCCTTTGATCCATGTTCTATAGGTCAATAACCT---AAAAAAAAACAATTAATTATAAATATAAAATGTCATTCGATATGACTTTTTCTTCTTCACCTTCCTCAGAACGCGTTTGTTACTTGCAATGTAATTTTTGCAACACCATTCTTGCGGTAAATATTTCTTCATCCTTCTTCAAACTTGTTTGAATTTTAATTACTTATTGTGCATATGATAATATAATTACTAGGGTTAAAAAAAAATATGCATGTTAGTCTAGGGCATAATTTGATTTTAAGCTCATGTGTGATGAGTATGATCATAGATTATTTATTATTAAAATTAAAAAAATATGTTTTTGATAGAAAATATATGTCTTTTGTTTTTTAGGTTTCAAGTGAAGTAAATATGGATGAAATTTTTGAAACATAATCTTATTTAGATGAAATATTCTTCTTTTATGAATTATAGAGTAAAAAGGATGTATTTGGTTGGATTTATAATCTTTCTTTGATATTTTATGTTAATTTTTACTAGATTTCACTTGGGACAAAAAAGGGTTTGTTGGTTTTTTTTTTAAAGAGTTTCATTTGTTTGGAAAATCTTGAAAAATTAACTTCAAATGAGTTTTATAAATAAAAAAAAAGAATTTTTATGATCTGAAGTATTTTCTTTATTCCAAAATTTCACAAATTATTGTACTACTAATTTTGGTGTAAATTAGATCTCTTACCTTCAAAATTGAAAAAAGAGAAAAAAAAATGGTGGGGTTTTCTGTTCACACATTTTAACACATTTGCCCACTGGATAATAAACTCAAAATAATAATAATAATAATAATAATATTTTTTCTTCTTTTTTCCCCAATTTTTGGGATATAACTAATTATGTTTAAGAGAAATAATCATGATTGGAATTTGAAACAATTAAGTATTGTTTTTTATTGAAAAAAATCATTTATAGAATTGTAGATCATTTAAATTAAAAGGAGAAAAATAATAATTCATATATAATATATAATATTTGTTATATATATTTTTTATTTATTTATAGAAGTTTATTAGATCCTTGTATTGGAATTGGACTCTGATTTCTGTTCTAGTCATGTCATTTTCCTTGTTATCTCTTTAAATTTATCACTTTTCTAGTGACTGAACAATGGTCAGAAAAAAAGTCAGGAGCACCAAAAGTAAAGGAATTAAAGAGATATGATTAGAGATACGATACTTTATCTTTAATCAGACGTCTCGAATAAAAAAAATTATGATAAAAACTAAGGTCATATGCATATAAATTCTGATTAATTGAGACTCTAAAGCTCAATTAAGGACTATAAATTCCCTTACCTTAGTTGTCCTTTGTGTCATGAATTTTGAAGTTAAAAGAGTTAAAATTTTAAATTTTAAAAATTGTGATTTTTTAAGTTGTATTTAGACATGTATTTTACTTTAAAATTTTTAAAGTTTTTTGAATGAAAATTTGAAATACTTCAGTTTTCGCTCACCTCAATTAATTCTACGAAATATCAAGGGTTTTCACATAGAAATAGTCACTACAACAAAAACAACTTTTAACGACAGTAAATATTGACATTAATAAAGAATGCTAAAATTTTTACCGACATTAGTTAAGTATCATTAGAACCAATATCACTAAATACTTTAACGACATATACGAAGAGTGCTAATTGATGCTAATGATCATTTTTGACGTAGTAATCGCTGATTACTACTAGTCAAACTAGAAAGAAGTCTATAGTTTAGTTATGTAAATTGTTACTACTTAATTTTTGTTATAGTGGTTACACAAATGGTAAATTATTATAGGATTGGATATATCTATAATATATATAAAATAATTATAAGTAATTTATATATTGACAAGCTATAATAGATAAATTTTTATAAATTTTATTCGAAAGAAATTAGACATGATAATTTTTCATCATATCCAGTTCGAACTCTCAAGACTATAATTAGTTATTCTTTTTTTTTTTCAAAAAGTTCCATAAAATCGAAAATTATTATATTTATATAATATTTCTCGATTTTAATCTGATGATATAAAAAATCTATATATTATCAGGTTAGTGTTCCATGCAGCAACATGTTAACCTTAGTGACAGTAAGATGTGGGCATTGTGCAAATATGCTTTCTGTTAATATTGGATCTTTAATTCAAGCTCTACCCCTTCAAGATGTTCAAGTAAGTAAATATATTAATTATTTTTCTCTATTTCATTTTATTTACGTATAAGACATATACAATCTTTTACGCACTATAATAAGTATTCATGAATCTTACGTAGGAACTTTTATTAGTGCTCAAACACGAAATACTTAGTTTTATGAATGTTTGCTTCAGATCGAATATAATCAAATATTGATATATTCAGATAATTTGAAAATAATCAATTCATCGCTTAAGCGAGACATTGATCAATTGCTATCCTTTCCTTTTCGATTTGTTCCAGTAAAACAACATGTAATTTCTACATTTTAAGGATAATTCGAGTTTAAACCTTTCAGTTTAACCCTAATATTTATAATTTTATAATTATATAATATTATGACATTTTTAAAATTATAATTTCTTTTAAAAAAAATTTATATACTTGTGTGTAATTCATAATCTCTATGGTCAAATGCTGTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTACCTTTTCCTAATTTTGTGGTAAAAAAAATTAAAAAAATATTTTTTTCCATTACTTTTTTTGTTGGTGGAGGAGAAGAAAGTGTTTTATACTAATTATTACTATGATAATAATAATATATATATTTTTTCTTTTTATCTGACAGAAGCTGCAAAGGCAACAGTACACAAATGTTGAAAATAATTCTAGTAATTATAAAGCTTATGGTTCATCATCATCATCCTCTTCAAAGTTCAACAGATATTCTTCCATTGTTTCTCCTCAAATTGAACCTAAAATCCCTTCGATTCGTCGTAAGTACTCTCTCTATCTCTCTTAATAAATCGCTACACATTAATTATATATAATCGTTCATAATAAGTAGAACGAGCAAATTATAACTTAATAAATAAGACAGTTGACCTACTATAACATATTTGAAATTTAAAGTTATAATATTAGTATATAAGTTAAATATTTTGTTGAATTGTTGTTTGCAACATGTCCTTTCAAAGTGTAATTAACTTAAAACAAGCTAGGTAAGTGTAACCGGCTACCAGGTCAATTTAAATCAAGTTAAGATGTTTAAATATATATTTTTTAAAGTTATATCGATATATCATATATCTTTAAGTTATATATACGTTTATCGATCGTAGCAGATAATCTGAGTTATTTATAAGACTATAATTTCGATATTATTTGGTTGATCTAATAATATAAAACAGCATGTACATTGTTGATGTACATAAGTATAGTGACTTAGAATCTTTATCAAGGTGATTCGAATAATGAAAATACGATATATAAGATTTGAATTTAAAGTATCAAATAGAGCTAATTTTTACTTTTATGTTCAGATAATTTAAACTCTTTATATATATAATATGATATTTTATTTAAAAAATAAATAAATGAACATGTGAATCCGTCTCGATTTGTAGTATGAAAAAGGAGGAGATATAATTGACAATAATATTTGGACTACATGAAGTTTCCTCTTCACTTTTATGACAACTGAAATTGATTGTGACATTACATTTGTATCCAACTCATCAATAACATTGTTAATTATTAGGGCCCTTTGGTTGGAGAACAATTTATATATTAAAATTAAATTTACACAGTTAATACTATAATATGTTTGGTGTGATAATTTAAGCACATTATTTGGTTATTATTTTTATAATTTTATTTAAATTAAAAATATATAAATTGTGAATTATAAAAAATAAAATAATTAATACATGCATTATTAATATCTTCATAATTTAAACGACGCACTTTAAATCAATAATCCATGTGGCATAATAGAAAACACTTCTAAATAACAATGAAGCTAGGGTTATGAAAAAATTCAATGGTTTTTGAGCAAAATCTTGTATTTATGTAATTATGTTAGTGAATCAACATAACAGGTACATAGATAAGTATCGAATACGTTACCTTTTCTAAAACTCAAAATTTATAAATTTAAAATTTTAACTCCGTCTCTTTCATATATCAAACTATGCAGCACCAGAGAAAAGACAACGTGTTCCTTCTGCGTACAACCGATTCATCAAGTAAGTTTTTTTTTCTTCCAGTAGATATTATGATGTTAATTTATTAATTCGCATTTAGAAATTTTAAATTTATGTATTTTTGAGATCAAATGTACTAAGTTCTACGTAATTCGAAAATCCGTCCATATTTAGTTACCCCTCTCTTGCCACCGAAAATTTGCAATATATTTATATTTACTGAGATCAAAAATATATATTTAAAATACCGATCGCATATTTTTTGCGCTATATTATTATGTTTCGAATGTGTATAGGGAAGAGATTCAAAGGATCAAGGCCAGTAATCCTGATATTAGCCATCGTGAAGCTTTTAGCACTGCTGCCAAAAATGTAAGTCCTCTCTTAATCAAAAATCTCGAGATTACACTGTGAAAATAATAAAAAAAAATATTGTTTTCGTTAGTATACCTAACACAATGAAAATGGAAACTAATATGGATACCTAGAAGGAGTTAAGCATGGGAAAAAGCGGGAGAGTCTTTTTAAGTTGATGACTTTTTGAATGATCGTGTGTTTAATTTACTTTTTTATGTCTTAAATCAGATTAAATTATGAAAATAAGAAAAAAGAATCTTTAGTAAAAAGCGTTTTTCTCGTTAGTAGACCTTACACAATGAAAATGAAAACTATGAATACCTACAAGGAGTTAAGCATGGGAAATAGCGGGAGTGTCTTTTTAAGTTGATGACTTTTTGAACGATTTTGCGTTTAATTTACTTTTTTTTATGTCTTGAATCTTTTAGGTAAAAATCTTACTTTGCATGTGATATAATACTAATTATATATCGTTTGAACTATAATTCTAGGCTTTCATATTTCAACTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGGTGTTGAATTGTCCAAATGTTTGTCGATAAACGTGCGTCTATTTTTAACCATTTATTCATCAAAATAATAATTTTAAACGTATTTTTAATCGTTAATTCAGACAAATAATAAAACAACAAAAGAAATGAAAATAACTTGAACTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTAGTGTTGAGTTGTCCAAATGTTTGTCGATAAATGTGCGTCTATTTTTGGCCATTTGTTGATCAAAATAATAATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAATAAAACAATAAAAGAAATGAAAATAACTTGAATTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGATGTTGTAATATATACTTCTGATATTGAATTGTCCAAATGTTTGTTGATAAACATGCGTCTATTTTTGGCCATTTTTATTCATCAAAATAATAATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAATAAAATAATAAAAGAAATGAAAATAACTTGAACTATATATTATTTCTATAATTTATCTAAATTAATATTTTCTTTGTATTAAAATATATTTTTGATGTTGAGTTGTCCAAATGTTTGTCGATAAACGTGAGTCTACTTTTGGCCATTTATTCATCGAAATAATAATTTTAAACGTATTTTTAATCGTTAATTCAAACAAATAATAAAACAATAAAAGAAAAGAAAATTACTTGCACTATACATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGATGTTGAGTTGTTTAAATATTTATCAATAGACGTGCGTTTATTTTTGGCCATTTATTCATGATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAACAAAACAATAAAAGAAATGAAAATAACTTGTTGCATGTGGAATTTTTTGAATGTTCACAAAAGAAAAATTATGGTAGGGACAAACAAGAATGACCACTAAAATAGAAGAAATTAAAAAAGAGAAAAATATATTTTTCAAGATTTTATCTTTTATTTTAATTTTTTGCTATTTTTGCAGTGGGCACATTTTCCACATATTCACTTTGGACTCAAGCTGGAGGGCAACAAATAGCGAGGGAAAAAAAACTTTAATATATGATATATACATAT</genome_strand>
        <mrna_strand>AATCCTTTTGCTTCAATTTGTATACAAACTTACCTTATATTATATATGCATACTATATATACATATGTATTTCTTCTTCACTCTTCCCCTTTGATCCATGTTCTATAGGTCAATAACCTAAAAAAAAAAAACAATTAATTATAAATATAAAATGTCATTCGATATGATTTTTTCTTCTTCACCTTCCTCAAAACGCGTTTGTTACTTGCAATGTAATTTTTGCAACACCATTCTTGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGTTCCATGCAGCAACATGTTAACCTTAGTGACAGTAAAATGTGGGCATTGTGCAAATATGCTTTCTGTTAATATTGGATCTTTAATTCAAGCTCTACCCCTTCAAAATGTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGCAAAGGCAACAGTACACAAATGTTGAAAATAATTCTAGTAATTATAAAGCTTATGGTTCATCATCATCATCCTCTTCAAAGTTCAACAAATATTCTTCCATTGTTTCTCCTCAAATTGAACCTAAAATCCCTTCAATTCGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAAAAAAAAACAACGTGTTCCTTCTGCGTACAACCAATTCATCAA..............................................................................................................................................................................................................................................................GGAAAAAATTCAAAGGATCAAGGCCAGTAATCCTGATATTACCCATCGTGAAGCTTTTACCACTGCTGCCAAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTTCCACATATTCACTTTGGACTCAAGCTGGAGGGCAACAAATAGTGAGGGGAAAAAAACTTTAATATATGATATATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720673" ref_strand="+" ref_description="SGN-E720673 [FC11CA04]">
      <seq>cccatggggatccgatgacaatccttttgcttcaatttgtatacaaacttaccttatattatatatgcatactatatatacatatgtatttcttcttcactcttcccctttgatccatgttctataggtcaataacctaaaaaaaaaaaacaattaattataaatataaaatgtcattcaatatgactttttcttcttcaccttcctcaaaacgcgtttgttacttgcaatgtaatttttgcaacaccattcttgcggttagtgttccatgcagcaacatgttaaccttagtgacagtaaaatgtgggcattgtgcaaatatgctttctgttaatattggatctttaattcaagctctaccccttcaaaatgttcaaaagctgcaaaggcaacagtacacaaatgttgaaaataattctagtaattataaagcttatggttcatcatcatcatcctcttcaaagttcaacaaatattcttccattgtttctcctcaaattgaacctaaaatcccttcaattcgtccaccaaaaaaaaaacaacgtgttccttctgcgtacaaccgattcatcaaggaaaaaattcaaaggatcaaggccagtaatcctgatattagccatcgtgaagcttttagcactgctgccaaaaattgggcacattttccacatattcactttggactcaagctggagggcaacaaatagtgaggggaaaaaaactttaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="98113" stop="91151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97809" g_stop="97575" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="257" r_length="238" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97574" i_stop="95663" i_length="1912">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95662" g_stop="95543" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="377" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95542" i_stop="94924" i_length="619">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94923" g_stop="94776" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="525" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94775" i_stop="93574" i_length="1202">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93573" g_stop="93525" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="574" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93524" i_stop="93271" i_length="254">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93270" g_stop="93195" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="650" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93194" i_stop="91529" i_length="1666">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91528" g_stop="91451" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="728" r_length="78" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E720673" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97809" e_stop="97575"/>
          <exon e_start="95662" e_stop="95543"/>
          <exon e_start="94923" e_stop="94776"/>
          <exon e_start="93573" e_stop="93525"/>
          <exon e_start="93270" e_stop="93195"/>
          <exon e_start="91528" e_stop="91451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTTTTGCTTCAATTTGTATACAAACTTACCTTATATTATATATGCATACTATATATACATATGTATTTCTTCTTCACTCTTCCCCTTTGATCCATGTTCTATAGGTCAATAACCT---AAAAAAAAACAATTAATTATAAATATAAAATGTCATTCGATATGACTTTTTCTTCTTCACCTTCCTCAGAACGCGTTTGTTACTTGCAATGTAATTTTTGCAACACCATTCTTGCGGTAAATATTTCTTCATCCTTCTTCAAACTTGTTTGAATTTTAATTACTTATTGTGCATATGATAATATAATTACTAGGGTTAAAAAAAAATATGCATGTTAGTCTAGGGCATAATTTGATTTTAAGCTCATGTGTGATGAGTATGATCATAGATTATTTATTATTAAAATTAAAAAAATATGTTTTTGATAGAAAATATATGTCTTTTGTTTTTTAGGTTTCAAGTGAAGTAAATATGGATGAAATTTTTGAAACATAATCTTATTTAGATGAAATATTCTTCTTTTATGAATTATAGAGTAAAAAGGATGTATTTGGTTGGATTTATAATCTTTCTTTGATATTTTATGTTAATTTTTACTAGATTTCACTTGGGACAAAAAAGGGTTTGTTGGTTTTTTTTTTAAAGAGTTTCATTTGTTTGGAAAATCTTGAAAAATTAACTTCAAATGAGTTTTATAAATAAAAAAAAAGAATTTTTATGATCTGAAGTATTTTCTTTATTCCAAAATTTCACAAATTATTGTACTACTAATTTTGGTGTAAATTAGATCTCTTACCTTCAAAATTGAAAAAAGAGAAAAAAAAATGGTGGGGTTTTCTGTTCACACATTTTAACACATTTGCCCACTGGATAATAAACTCAAAATAATAATAATAATAATAATAATATTTTTTCTTCTTTTTTCCCCAATTTTTGGGATATAACTAATTATGTTTAAGAGAAATAATCATGATTGGAATTTGAAACAATTAAGTATTGTTTTTTATTGAAAAAAATCATTTATAGAATTGTAGATCATTTAAATTAAAAGGAGAAAAATAATAATTCATATATAATATATAATATTTGTTATATATATTTTTTATTTATTTATAGAAGTTTATTAGATCCTTGTATTGGAATTGGACTCTGATTTCTGTTCTAGTCATGTCATTTTCCTTGTTATCTCTTTAAATTTATCACTTTTCTAGTGACTGAACAATGGTCAGAAAAAAAGTCAGGAGCACCAAAAGTAAAGGAATTAAAGAGATATGATTAGAGATACGATACTTTATCTTTAATCAGACGTCTCGAATAAAAAAAATTATGATAAAAACTAAGGTCATATGCATATAAATTCTGATTAATTGAGACTCTAAAGCTCAATTAAGGACTATAAATTCCCTTACCTTAGTTGTCCTTTGTGTCATGAATTTTGAAGTTAAAAGAGTTAAAATTTTAAATTTTAAAAATTGTGATTTTTTAAGTTGTATTTAGACATGTATTTTACTTTAAAATTTTTAAAGTTTTTTGAATGAAAATTTGAAATACTTCAGTTTTCGCTCACCTCAATTAATTCTACGAAATATCAAGGGTTTTCACATAGAAATAGTCACTACAACAAAAACAACTTTTAACGACAGTAAATATTGACATTAATAAAGAATGCTAAAATTTTTACCGACATTAGTTAAGTATCATTAGAACCAATATCACTAAATACTTTAACGACATATACGAAGAGTGCTAATTGATGCTAATGATCATTTTTGACGTAGTAATCGCTGATTACTACTAGTCAAACTAGAAAGAAGTCTATAGTTTAGTTATGTAAATTGTTACTACTTAATTTTTGTTATAGTGGTTACACAAATGGTAAATTATTATAGGATTGGATATATCTATAATATATATAAAATAATTATAAGTAATTTATATATTGACAAGCTATAATAGATAAATTTTTATAAATTTTATTCGAAAGAAATTAGACATGATAATTTTTCATCATATCCAGTTCGAACTCTCAAGACTATAATTAGTTATTCTTTTTTTTTTTCAAAAAGTTCCATAAAATCGAAAATTATTATATTTATATAATATTTCTCGATTTTAATCTGATGATATAAAAAATCTATATATTATCAGGTTAGTGTTCCATGCAGCAACATGTTAACCTTAGTGACAGTAAGATGTGGGCATTGTGCAAATATGCTTTCTGTTAATATTGGATCTTTAATTCAAGCTCTACCCCTTCAAGATGTTCAAGTAAGTAAATATATTAATTATTTTTCTCTATTTCATTTTATTTACGTATAAGACATATACAATCTTTTACGCACTATAATAAGTATTCATGAATCTTACGTAGGAACTTTTATTAGTGCTCAAACACGAAATACTTAGTTTTATGAATGTTTGCTTCAGATCGAATATAATCAAATATTGATATATTCAGATAATTTGAAAATAATCAATTCATCGCTTAAGCGAGACATTGATCAATTGCTATCCTTTCCTTTTCGATTTGTTCCAGTAAAACAACATGTAATTTCTACATTTTAAGGATAATTCGAGTTTAAACCTTTCAGTTTAACCCTAATATTTATAATTTTATAATTATATAATATTATGACATTTTTAAAATTATAATTTCTTTTAAAAAAAATTTATATACTTGTGTGTAATTCATAATCTCTATGGTCAAATGCTGTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTACCTTTTCCTAATTTTGTGGTAAAAAAAATTAAAAAAATATTTTTTTCCATTACTTTTTTTGTTGGTGGAGGAGAAGAAAGTGTTTTATACTAATTATTACTATGATAATAATAATATATATATTTTTTCTTTTTATCTGACAGAAGCTGCAAAGGCAACAGTACACAAATGTTGAAAATAATTCTAGTAATTATAAAGCTTATGGTTCATCATCATCATCCTCTTCAAAGTTCAACAGATATTCTTCCATTGTTTCTCCTCAAATTGAACCTAAAATCCCTTCGATTCGTCGTAAGTACTCTCTCTATCTCTCTTAATAAATCGCTACACATTAATTATATATAATCGTTCATAATAAGTAGAACGAGCAAATTATAACTTAATAAATAAGACAGTTGACCTACTATAACATATTTGAAATTTAAAGTTATAATATTAGTATATAAGTTAAATATTTTGTTGAATTGTTGTTTGCAACATGTCCTTTCAAAGTGTAATTAACTTAAAACAAGCTAGGTAAGTGTAACCGGCTACCAGGTCAATTTAAATCAAGTTAAGATGTTTAAATATATATTTTTTAAAGTTATATCGATATATCATATATCTTTAAGTTATATATACGTTTATCGATCGTAGCAGATAATCTGAGTTATTTATAAGACTATAATTTCGATATTATTTGGTTGATCTAATAATATAAAACAGCATGTACATTGTTGATGTACATAAGTATAGTGACTTAGAATCTTTATCAAGGTGATTCGAATAATGAAAATACGATATATAAGATTTGAATTTAAAGTATCAAATAGAGCTAATTTTTACTTTTATGTTCAGATAATTTAAACTCTTTATATATATAATATGATATTTTATTTAAAAAATAAATAAATGAACATGTGAATCCGTCTCGATTTGTAGTATGAAAAAGGAGGAGATATAATTGACAATAATATTTGGACTACATGAAGTTTCCTCTTCACTTTTATGACAACTGAAATTGATTGTGACATTACATTTGTATCCAACTCATCAATAACATTGTTAATTATTAGGGCCCTTTGGTTGGAGAACAATTTATATATTAAAATTAAATTTACACAGTTAATACTATAATATGTTTGGTGTGATAATTTAAGCACATTATTTGGTTATTATTTTTATAATTTTATTTAAATTAAAAATATATAAATTGTGAATTATAAAAAATAAAATAATTAATACATGCATTATTAATATCTTCATAATTTAAACGACGCACTTTAAATCAATAATCCATGTGGCATAATAGAAAACACTTCTAAATAACAATGAAGCTAGGGTTATGAAAAAATTCAATGGTTTTTGAGCAAAATCTTGTATTTATGTAATTATGTTAGTGAATCAACATAACAGGTACATAGATAAGTATCGAATACGTTACCTTTTCTAAAACTCAAAATTTATAAATTTAAAATTTTAACTCCGTCTCTTTCATATATCAAACTATGCAGCACCAGAGAAAAGACAACGTGTTCCTTCTGCGTACAACCGATTCATCAAGTAAGTTTTTTTTTCTTCCAGTAGATATTATGATGTTAATTTATTAATTCGCATTTAGAAATTTTAAATTTATGTATTTTTGAGATCAAATGTACTAAGTTCTACGTAATTCGAAAATCCGTCCATATTTAGTTACCCCTCTCTTGCCACCGAAAATTTGCAATATATTTATATTTACTGAGATCAAAAATATATATTTAAAATACCGATCGCATATTTTTTGCGCTATATTATTATGTTTCGAATGTGTATAGGGAAGAGATTCAAAGGATCAAGGCCAGTAATCCTGATATTAGCCATCGTGAAGCTTTTAGCACTGCTGCCAAAAATGTAAGTCCTCTCTTAATCAAAAATCTCGAGATTACACTGTGAAAATAATAAAAAAAAATATTGTTTTCGTTAGTATACCTAACACAATGAAAATGGAAACTAATATGGATACCTAGAAGGAGTTAAGCATGGGAAAAAGCGGGAGAGTCTTTTTAAGTTGATGACTTTTTGAATGATCGTGTGTTTAATTTACTTTTTTATGTCTTAAATCAGATTAAATTATGAAAATAAGAAAAAAGAATCTTTAGTAAAAAGCGTTTTTCTCGTTAGTAGACCTTACACAATGAAAATGAAAACTATGAATACCTACAAGGAGTTAAGCATGGGAAATAGCGGGAGTGTCTTTTTAAGTTGATGACTTTTTGAACGATTTTGCGTTTAATTTACTTTTTTTTATGTCTTGAATCTTTTAGGTAAAAATCTTACTTTGCATGTGATATAATACTAATTATATATCGTTTGAACTATAATTCTAGGCTTTCATATTTCAACTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGGTGTTGAATTGTCCAAATGTTTGTCGATAAACGTGCGTCTATTTTTAACCATTTATTCATCAAAATAATAATTTTAAACGTATTTTTAATCGTTAATTCAGACAAATAATAAAACAACAAAAGAAATGAAAATAACTTGAACTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTAGTGTTGAGTTGTCCAAATGTTTGTCGATAAATGTGCGTCTATTTTTGGCCATTTGTTGATCAAAATAATAATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAATAAAACAATAAAAGAAATGAAAATAACTTGAATTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGATGTTGTAATATATACTTCTGATATTGAATTGTCCAAATGTTTGTTGATAAACATGCGTCTATTTTTGGCCATTTTTATTCATCAAAATAATAATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAATAAAATAATAAAAGAAATGAAAATAACTTGAACTATATATTATTTCTATAATTTATCTAAATTAATATTTTCTTTGTATTAAAATATATTTTTGATGTTGAGTTGTCCAAATGTTTGTCGATAAACGTGAGTCTACTTTTGGCCATTTATTCATCGAAATAATAATTTTAAACGTATTTTTAATCGTTAATTCAAACAAATAATAAAACAATAAAAGAAAAGAAAATTACTTGCACTATACATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGATGTTGAGTTGTTTAAATATTTATCAATAGACGTGCGTTTATTTTTGGCCATTTATTCATGATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAACAAAACAATAAAAGAAATGAAAATAACTTGTTGCATGTGGAATTTTTTGAATGTTCACAAAAGAAAAATTATGGTAGGGACAAACAAGAATGACCACTAAAATAGAAGAAATTAAAAAAGAGAAAAATATATTTTTCAAGATTTTATCTTTTATTTTAATTTTTTGCTATTTTTGCAGTGGGCACATTTTCCACATATTCACTTTGGACTCAAGCTGGAGGGCAACAAATAGCGAGGGAAAAAAAACTTTAATATA</genome_strand>
        <mrna_strand>AATCCTTTTGCTTCAATTTGTATACAAACTTACCTTATATTATATATGCATACTATATATACATATGTATTTCTTCTTCACTCTTCCCCTTTGATCCATGTTCTATAGGTCAATAACCTAAAAAAAAAAAACAATTAATTATAAATATAAAATGTCATTCAATATGACTTTTTCTTCTTCACCTTCCTCAAAACGCGTTTGTTACTTGCAATGTAATTTTTGCAACACCATTCTTGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGTTCCATGCAGCAACATGTTAACCTTAGTGACAGTAAAATGTGGGCATTGTGCAAATATGCTTTCTGTTAATATTGGATCTTTAATTCAAGCTCTACCCCTTCAAAATGTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGCAAAGGCAACAGTACACAAATGTTGAAAATAATTCTAGTAATTATAAAGCTTATGGTTCATCATCATCATCCTCTTCAAAGTTCAACAAATATTCTTCCATTGTTTCTCCTCAAATTGAACCTAAAATCCCTTCAATTCGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAAAAAAAAACAACGTGTTCCTTCTGCGTACAACCGATTCATCAA..............................................................................................................................................................................................................................................................GGAAAAAATTCAAAGGATCAAGGCCAGTAATCCTGATATTAGCCATCGTGAAGCTTTTAGCACTGCTGCCAAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTTCCACATATTCACTTTGGACTCAAGCTGGAGGGCAACAAATAGTGAGGGGAAAAAAACTTTAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330492" ref_strand="+" ref_description="SGN-E330492 [cTOD-4-H20]">
      <seq>ttaatagtagagccaaaaaaagtttcaatttacttgagataaagaaagcatatattcgattattaaagtcagaagcaacaatgggtcatcatcatcatcagttaaccgacccacttgtcactctttgtactagttgtaaaagtttcttctttttcttgtctttttcttgcagaatttgtcaatggaacctttgatcttcaaaattaggcttcttattcttgcttgggtgcatttcagatctcattcaggtccaatatccttggtgaaacacttctctaataaagatataaagaaagcaactgatggttttaggagaattgtttacaactcttccaaaatagttgcttacagagcaaagtttcaaaatggccatgctgcgtttgtgaaagaagtccgaggtttcgaagatgaggatgatacggccttctacagggaggtacagttactcggtcgcttgcatcatcgacatattgctgcacttaatgggttctcttgcggccctaagaggttcctagtctttgaaaatatggaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="101387" stop="105874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101687" g_stop="101934" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101935" i_stop="103704" i_length="1770">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103705" g_stop="103963" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="507" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103964" i_stop="105545" i_length="1582">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105546" g_stop="105574" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="536" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E330492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101687" e_stop="101934"/>
          <exon e_start="103705" e_stop="103963"/>
          <exon e_start="105546" e_stop="105574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAGGTAAACCCCATCTGCCTCAAATCATGTGAAATTGTATTTGTTGAATGTGTTGTGGGTAGTTTTTGAATGGAAGATTTTGTGTAATTTGTGGGGTGAGGGGGTGGAGTTTTTAGTTATCCTGAAGTTGAAATTTGAATTGGGTTGTAGTAAAGTTGTAATCTTTAGTGAATTTGATAGTGATCTTGGTTTGTCTTTTTATGCTGACTTAAGGTGTGTCAGCAGCAGAATTGGTTTTTTCTTTTTTTTTGACTGTATATGGGATTACTGTTATGTAGTGATGGTTAATTGATTAAAGACAGACTATTTACCCCACTAAGGTAGCAGTAAGGTCTGTGTATAGATTATAGAGTACATCTTATCCTAGACTTCATTTGTGGAATTAAAATGGATATGTTGGTGGTGGTGGTGGTGATGGCTAATTGCTTGAGAATGGGTGAAAGAAGTAAAATTTGTAAGGAACCTGAAGTTGAAGTTGATGGGAATTGAAGAAAAATGTAACTGACGAGGTTCTTGGATCGCAGGTATTTGTGTGGTAGTTTCTTGAAATCTGTTGTTGGAGGCTAGAGATTTTAATTACCCTGAAGTTGAAATTTGCAGTAAAGTTGTAAGTTTGTGAATTGGTAATGATCTTGACTTGCCTGTTTTATGCTGACTAGATGTGTGTGAGCAACAAATTAGTTTCTTCTTTCTGTTCACTGTATTTTGGATTATTTTTATGTAGTGATGATTAATTGCTTGAGAATGGGTGGACGAAGTACAATTTATAATGACCCTGAAGTTGATTTTGATGTTGTTACTTATGAGGTTCTTGGGTCGCAGTCTCGCAGATTGTGCTTATTTTTGTGGTAGTTTCTTAAGGGGTGAGGCTTTTAAGTATCCTGAAGTTAAAATTTGAGGCGGGTTGCAGTAAAGTTGTAATTTTGTGAATTGATAGTGAACTTGACTTGTTGTTTTTGCTGACTAGATATGTGTCGGCAGCTGTATTAGTTTCTTCTTTCTTTAACTGTATTTTGGATTAGTGTTATGCAGTAATGGTGACCCTGAAGTTGAAGTTGATGTGAACCAAAGAAAATTGTACTATTTTTGTGAATTATAAAGTTTTGTCCTTGTCTTTTTGTGCTGATTGGAGAAGGGTGAGTAACATTGTCAGTGAGTTTTACTTTTAGTTTCTTTTTTACAACACTGACATTGCCAATTGGTGATGGAAAAAAAAAGGAAGGGAAAACAAGTAAAACAAAAATAAAATACAAGAACACCGTAAATATGATAGTGTAAGGACTCGGTTATCATCTAGTAGTTTCTGGTGCTTGAAAATAGTTCCTTATATAATAGATTACATGACTGAAAATGACTTGGTGAAGCAATTCTCTCGGTCATATGCTTACAGTTGTTTTACCCTAGTTCACTTGTTGTTCCTTGGAACGGTTGAGATGGAAACTATGGCAATTAGCAGACATTGTGTGCTAGGTGATTCAAAATAGAATTTGTAAAGCAGGGTTGTCAATCGCTGGAAACGTCATTATAAGCTGTGGCTTGTTGATGGAACTATGTCCTGTCTTCAAGTCTATTAGTTTTAGGCTGGCATTGTTACACAACTTCCTCTAATGTAGCAAGCAGGCTCACTCTTAGAAGGTTTACTTGACTGTTTGGACTGAGATATTCATTTTTAACTAATATAAGAAAGTCTAAGCCTTGAAGGTTTACTGCTAGACACAGACTTTGCCTTGAAAATCATGGGATATTTTGTTTTTGAACGTAAATCAATTTCAGGTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAGGTTAATTTCCTAAGCTTTGGCTTGATGAAGTTTGTGATTTGTAGAAATGGTTCTGTCTCGTTGATTAAAAATCTATCTTTGAGATAAGAATGAGAAAAAATATTGGTTGATTATTTCTTGATCATATTATGATTATAATATAATACTAGTGCTATTGTATATTGTATTACCAATTTATACATTTTGATGCTATCAGAAAAAGTCATAAATATCCGTCATAATTTCTGATCACCAGCAATCTGACCTCTGATCTTTGATATTTTTTGTCACCATTTTTCTTTCGCAACCAAAAGACGTGCAAAATGCAACTTACTACTGGGAATCGCGGGTTCCTTGGTCTAGGAGGTAGGTTTGTAGGTGAGGCATTGTGTCGTCAAGCAGAAAGAAATTCACTCTTCCATTTCTTAGTAGGAATGCTCCTATGTTAGCAGGACATTTCGTGCAAGAACAAGGTTTGAGTTAGTGCACTAGCTAGGCTGTGTTTCTAGCCTAATGGCTCTGTCTTTGAGGTAACCCGGACTAGTACCAACTTAATCTAGTAAATAGGATGTTGAAAAGGCCGGTGGGTCTTCAGGCTGCTTTTTTAATTAATAGTTTCAATCAAAATTCCATCGATTGTAGCTAGTGATTGCCCGGGTTGGTGTGTGATCACCAAAGGTGAATTAACCCTTCAGATGCTCTCTCTGCCAATGCCTAATACCCCCTCCGGTTCCGCCGAGTCACAATTGTAAATTGTTCATAGATCGCTCAATCAGGCTAAATATCTTAAGCAAATGCTTAATTAGCTCTCAATCCTGGCAAAAATATTGACTTCCAAGAATATTTAGATTCTAGCTCTAGTGATATACTGAAAATTAGGGAATCCCCATTTTCATTTCCATGCAGTGTTCTATTGAAATGTTTCAGTTTTTTATTGGTTTGTACTTCCTTTTCTTCAGTTCCAATAGATCTCCATTCCTTCCTTTTCCCTTTGTATAATCACATCACATATGCAGTACAAATAGCTATGGGGGCAAACCCATTATCTTGTGTGTTAGGCTTTCATTGGGTTATGTCTCATCAGCTACTATTTTCTTATTTCGTCTCATTTTTAATAGATAATCAGACAATGCAAATGCATTTTAGCTGCCCAAACTTGTCCCTTAGTCACTCTTTTCCAAGGTGTGGTCAGAAATGTGACATTTCTAGGTGGTTCAATCCGAGAACATTGCTAGAGCAAGAGATACTCTAATTGTGGCACTGAGTTCATGGAGATTTTTCCTGTGAAAAAGAAAGCATTTTGAAGAGACCTATTTAAATGTGAAATTAAATGAAATTCAACATTTCGTTCCTCGTAATACAACATAAGGTCATCAATTTCTCCTGTTACCGCAAATGAAACTAATCAACCTACACAATGGTTTACCACAGTTTTATTAGAAAAAGTATCGCATAGCTTTATCTGCTTAATTGCAGTGGATATCCTTTTGCTTCCAGTTCCTATACATTCTGGGTGTGTATGCTCCTTTTCTTTGGTTGCATTTCCCTTTTGTTCTTTTGGCTTCTTTCTCCATTCTCTGATAGCATATCTTGTCCACTATAGGTTCCTAGTCTTTGAAAATATGGAAAAAG</genome_strand>
        <mrna_strand>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAGTCTTTGAAAATATGGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687663" ref_strand="+" ref_description="SGN-E687663 [T3_tus_79_F05]">
      <seq>cgtacacctttctgaccctctgatgactccactaaactggattataagactgcagatagcagttggcatcgctgctgctttagaatatctccacttcttttgtgatccgccgatgtaccacgtttcagtcagttcaagtaccatcatgctggacgagaacttcacagctaaactctgtgatgttagcctcctttgttctgtcgagaacaacaatccacttccgaagtctaaatgctccaaagaatgtggtaatgagatctgcaaacagacaatcttccagcttggtttgctgatcctcgagttagtcaccggtcaatcctcagaagaaggaggtgttgacttagttcaatgggttcaagattctcgcttccgaagaagatccattcaccagatgattgatcctgatctcggagacagctacgatttcaaagagcttaaaggtcttttggcagttgcaaaaatgtgtgtacaatctatccataagcctacaataaagacccctcaaatattgtggtatctccaaaagaaactgggcaggactccagtagtttgctgatgacttgagtcatgtcatgttcacagatatagatcatagattgtgtgagtagacattttttttgtaaagctatgttactcggactcttcaaatcgaagagtccacacaacttagtctgtaagtagtctgctgcgttttgacattgattatgaaattagacctcttcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="105390" stop="107170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105585" g_stop="105598" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105599" i_stop="105696" i_length="98">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105697" g_stop="105764" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="82" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105765" i_stop="106012" i_length="248">
            <donor d_prob="0.910" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106013" g_stop="106102" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="172" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106103" i_stop="106224" i_length="122">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106225" g_stop="106294" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="242" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106295" i_stop="106378" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106379" g_stop="106870" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="734" r_length="492" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E687663" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105585" e_stop="105598"/>
          <exon e_start="105697" e_stop="105764"/>
          <exon e_start="106013" e_stop="106102"/>
          <exon e_start="106225" e_stop="106294"/>
          <exon e_start="106379" e_stop="106870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACACCTTTCTGGTAAGTTTAAGCACAAGCCTTCTTTCTTCTTTTTTTTTCTCCGTCTACTTCGCGTTGAATTTGATGTATGTGTTTCTATCTATGTTTGGTTCTTGCAGACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTAGTATGTTCCTCAAGCTGCTTAGTACTATGTAGTCATATCTTGATCATTTCCAATACAAGCTTTTTATATTTTTCATTTTCCACATTGAAGATATAGTTACTGATAGATTAACTCAAATAGCAAACCCCTCAGAACAGCCTCGATATTACTAAATACAGACTCTGAATTTATTTAGTGTGTCGGCTCTTCTAAGAACTGATTATCACCTAACTGTTGGATTACTGATTGTTGTTTATATCTTGATTTAGGAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAAGTGAGCCTCGCAATCTTGAGCACCTCTCTATAGTAAATTGCTTCATCATCATATTTCATGCACATTTTTTGGACCTGCTTCATCTTTTGTTAAAATAATGACCATATGGTTCCTTGTTCCAGCTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAGGTACAAGGCTTCCTCCTTATTATCATCACCTCAAATCATACAAGTTTTGACCTATGTTCAGATTTTGCATTGCTTATCTTGCAGAATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATTATGAAATTAGACCTCTTCATAAAAACAAGA</genome_strand>
        <mrna_strand>CGTACACCTTTCTG..................................................................................................ACCCTCTGATGACTCCACTAAACTGGATTATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTA........................................................................................................................................................................................................................................................GAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAA..........................................................................................................................CTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAG....................................................................................AATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATTATGAAATTAGACCTCTTCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323132" ref_strand="+" ref_description="SGN-E323132 [cTOB-28-L23]">
      <seq>aacacctttctgaccctctgatgactccactaaactggagaataagactgcagatagcagttggcatcgctgctgctttagaatatctccacttcttttgtgatccgccgatgtaccacgtttcagtcagttcaagtaccatcatgctggacgagaacttcacagctaaactctgtgatgttagcctcctttgttctgtcgagaacaacaatccacttccgaagtctaaatgctccaaagaatgtggtaatgagatctgcaaacagacaatcttccagcttggtttgctgatcctcgagttagtcaccggtcaatcctcagaagaaggaggtgttgacttagttcaatgggttcaagattctcgcttccgaagaagatccattcaccagatgattgatcctgatctcggagacagctacgatttcaaagagcttaaaggtcttttggcagttgcaaaaatgtgtgtacaatctatccataagcctacaataaagacccctcaaatattgtggtatctccaaaagaaactgggcaggactccagtagtttgctgatgacttgagtcatgtcatgttcacagatatagatcatagattgtgtgagtagacattttttttgtaaagctatgttactcggactcttcaaatcgaagagtcacacaacttagtctgtaagtagtctgctgcgttttgacattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="105390" stop="107139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105587" g_stop="105598" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105599" i_stop="105696" i_length="98">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105697" g_stop="105764" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="80" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105765" i_stop="106012" i_length="248">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106013" g_stop="106102" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="170" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106103" i_stop="106224" i_length="122">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106225" g_stop="106294" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="240" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106295" i_stop="106378" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106379" g_stop="106840" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="701" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E323132" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105587" e_stop="105598"/>
          <exon e_start="105697" e_stop="105764"/>
          <exon e_start="106013" e_stop="106102"/>
          <exon e_start="106225" e_stop="106294"/>
          <exon e_start="106379" e_stop="106840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCTTTCTGGTAAGTTTAAGCACAAGCCTTCTTTCTTCTTTTTTTTTCTCCGTCTACTTCGCGTTGAATTTGATGTATGTGTTTCTATCTATGTTTGGTTCTTGCAGACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTAGTATGTTCCTCAAGCTGCTTAGTACTATGTAGTCATATCTTGATCATTTCCAATACAAGCTTTTTATATTTTTCATTTTCCACATTGAAGATATAGTTACTGATAGATTAACTCAAATAGCAAACCCCTCAGAACAGCCTCGATATTACTAAATACAGACTCTGAATTTATTTAGTGTGTCGGCTCTTCTAAGAACTGATTATCACCTAACTGTTGGATTACTGATTGTTGTTTATATCTTGATTTAGGAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAAGTGAGCCTCGCAATCTTGAGCACCTCTCTATAGTAAATTGCTTCATCATCATATTTCATGCACATTTTTTGGACCTGCTTCATCTTTTGTTAAAATAATGACCATATGGTTCCTTGTTCCAGCTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAGGTACAAGGCTTCCTCCTTATTATCATCACCTCAAATCATACAAGTTTTGACCTATGTTCAGATTTTGCATTGCTTATCTTGCAGAATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATT</genome_strand>
        <mrna_strand>AACACCTTTCTG..................................................................................................ACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTA........................................................................................................................................................................................................................................................GAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAA..........................................................................................................................CTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAG....................................................................................AATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGT-CACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704179" ref_strand="+" ref_description="SGN-E704179 [FA23CC07]">
      <seq>ctggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggtttttgttctccaacagaaagatcacccgaagttcaagaggaagggtgaagacctgtttgttgatcacacattgaccttaactgaggcactgtgtggtttccagttcatattgggacacttggatggcagacggctcctcataaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaaagtcaaaaactgatgctttagtgaaatagaaatattattttcttggggaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108615" stop="106843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108315" g_stop="108089" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108088" i_stop="107921" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107920" g_stop="107722" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="426" r_length="199" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107607" g_stop="107144" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="881" r_length="455" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="882" polyA_stop="897"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E704179" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108315" e_stop="108089"/>
          <exon e_start="107920" e_stop="107722"/>
          <exon e_start="107607" e_stop="107144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>CTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTTGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGAAGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGGACACTTGGATGGCAGACGGCTCCTCATAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGA--T-----G--TTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAAGTCAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395587" ref_strand="+" ref_description="SGN-E395587 [TUS-16-F12](-)">
      <seq>tcaagaggaagggtgaggacctgtttgttgatcacacattgcccttaaatgaggcactgtgtggtttccagttcatattggcacacttggatggcagacgggtccttgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcattgtggaatttccggatttgttgagcctgccacaggtgcaggttttggaggcaatgttaccatcaaggcctacatcacagtactttgacatggaactggatgaatgtgaggggaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtttggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttttgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattatttttttggggaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108162" stop="106843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107862" g_stop="107722" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107607" g_stop="107144" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="605" r_length="464" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="628"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E395587" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107862" e_stop="107722"/>
          <exon e_start="107607" e_stop="107144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>TCAAGAGGAAGGGTGAGGACCTGTTTGTTGATCACACATTGCCCTTAAATGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGGTCCTTGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATTGTGGAATTTCCGGATTTGTTGAGCCTGCCACAGGTGCAGGTTTTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTTTGACATGGAACTGGATGAATGTGAGGGGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTTTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTTTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTTTTGGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244147" ref_strand="+" ref_description="SGN-E244147 [cLEE-1-G14]">
      <seq>tccagttcatattggcacacttggatggcagacggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108096" stop="106843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107796" g_stop="107722" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107607" g_stop="107144" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="539" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="552"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E244147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107796" e_stop="107722"/>
          <exon e_start="107607" e_stop="107144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>TCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351789" ref_strand="+" ref_description="SGN-E351789 [cTOS-8-P2]">
      <seq>acggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108065" stop="106843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107765" g_stop="107722" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107607" g_stop="107144" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="508" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="521"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E351789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107765" e_stop="107722"/>
          <exon e_start="107607" e_stop="107144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353363" ref_strand="+" ref_description="SGN-E353363 [cTOS-15-I18]">
      <seq>acggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108065" stop="106843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107765" g_stop="107722" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107607" g_stop="107144" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="508" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="521"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E353363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107765" e_stop="107722"/>
          <exon e_start="107607" e_stop="107144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356921" ref_strand="+" ref_description="SGN-E356921 [cTOS-22-J15]">
      <seq>acggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108065" stop="106843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107765" g_stop="107722" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107607" g_stop="107144" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="508" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="521"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E356921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107765" e_stop="107722"/>
          <exon e_start="107607" e_stop="107144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>ACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208145" ref_strand="-" ref_description="SGN-E208145 [cLEC-34-P8]">
      <seq>taaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaaaaaactcgagactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108054" stop="106843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107754" g_stop="107722" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107607" g_stop="107144" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="497" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="515"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E208145" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208145" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107754" e_stop="107722"/>
          <exon e_start="107607" e_stop="107144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>TAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251569" ref_strand="-" ref_description="SGN-E251569 [cLEG-9-D17]">
      <seq>agttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaacaaactgatgctttagtgaaacagaaatattattttcttggggaacaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="107910" stop="106843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107735" g_stop="107722" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107607" g_stop="107144" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="478" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="502"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E251569" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251569" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="107735" e_stop="107722"/>
          <exon e_start="107607" e_stop="107144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>AGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAACAAACTGATGCTTTAGTGAAACAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711697" ref_strand="+" ref_description="SGN-E711697 [FB02CH05]">
      <seq>cgattaggatggcagacggctcctcataaagtcaaaccctgccgaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108076" stop="106843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107780" g_stop="107722" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107607" g_stop="107146" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="512" r_length="453" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="546"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E711697" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107780" e_stop="107722"/>
          <exon e_start="107607" e_stop="107146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAA</genome_strand>
        <mrna_strand>CGATTAGGATGGCAGACGGCTCCTCATAAAGTCAAACCCTGCCGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGA--T-----G--TTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250797" ref_strand="+" ref_description="SGN-E250797 [cLEG-13-C3]">
      <seq>ttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttcgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgaggcactgtgtggtttccagttcatattggcacacttggatggcagacggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108602" stop="107094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108302" g_stop="108089" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108088" i_stop="107921" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107920" g_stop="107722" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="413" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107607" g_stop="107394" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="627" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E250797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108302" e_stop="108089"/>
          <exon e_start="107920" e_stop="107722"/>
          <exon e_start="107607" e_stop="107394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAA</genome_strand>
        <mrna_strand>TTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700698" ref_strand="+" ref_description="SGN-E700698 [FA13DF05]">
      <seq>ccattgaaggtgtcgcttgaggacctataccctgggatgaccaacaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggtttttgttctccaacagaaagatcacccgaagttcaagaggaagggtgaagacctgtttgttgatcacacattgaccttaactgaggcactgtgtggtttccagttcatattgggacacttggatggcagacggctcctcataaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108949" stop="107209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108649" g_stop="108561" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108560" i_stop="108366" i_length="195">
            <donor d_prob="0.832" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108365" g_stop="108089" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="366" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108088" i_stop="107921" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107920" g_stop="107722" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="565" r_length="199" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107607" g_stop="107509" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="664" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E700698" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108649" e_stop="108561"/>
          <exon e_start="108365" e_stop="108089"/>
          <exon e_start="107920" e_stop="107722"/>
          <exon e_start="107607" e_stop="107509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATT</genome_strand>
        <mrna_strand>CCATTGAAGGTGTCGCTTGAGGACCTATACCCTGGGATGACCAACAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTTGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGAAGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGGACACTTGGATGGCAGACGGCTCCTCATAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250880" ref_strand="+" ref_description="SGN-E250880 [cLEG-13-C15]">
      <seq>aatcagacagcttgggcctgtaatgatccagcaaatgcagcagccttgtaatgaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaaatccatgttgaaaaaggaatgcataatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttcgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgatgcactgtgtggtttccagttcatattggcacacttggatggcagacggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaatgaatgccagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108599" stop="107269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108299" g_stop="108089" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108088" i_stop="107921" i_length="168">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107920" g_stop="107722" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="410" r_length="199" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107607" g_stop="107569" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="449" r_length="39" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E250880" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108299" e_stop="108089"/>
          <exon e_start="107920" e_stop="107722"/>
          <exon e_start="107607" e_stop="107569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTT</genome_strand>
        <mrna_strand>AATCAGACAGCTTGGGCCTGTAATGATCCAGCAAATGCAGCAGCCTTGTAATGAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAATCCATGTTGAAAAAGGAATGCATAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGATGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAATGAATGCCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273415" ref_strand="+" ref_description="SGN-E273415 [cLEN-3-E8]">
      <seq>agaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttcgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgaagcactgtgtggtttccagttcatattggcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108906" stop="107477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108606" g_stop="108561" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108560" i_stop="108366" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108365" g_stop="108089" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="323" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108088" i_stop="107921" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107920" g_stop="107777" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="467" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E273415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108606" e_stop="108561"/>
          <exon e_start="108365" e_stop="108089"/>
          <exon e_start="107920" e_stop="107777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACAC</genome_strand>
        <mrna_strand>AGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAAGCACTGTGTGGTTTCCAGTTCATATTGGCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395588" ref_strand="+" ref_description="SGN-E395588 [TUS-16-F12]">
      <seq>cttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgcttgaggacctatacaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttcgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgaggcactgtgtggtttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="109353" stop="107494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109053" g_stop="109028" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109027" i_stop="108700" i_length="328">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108699" g_stop="108561" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="165" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108560" i_stop="108366" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108365" g_stop="108089" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="442" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108088" i_stop="107921" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107920" g_stop="107794" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="569" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E395588" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109053" e_stop="109028"/>
          <exon e_start="108699" e_stop="108561"/>
          <exon e_start="108365" e_stop="108089"/>
          <exon e_start="107920" e_stop="107794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCC</genome_strand>
        <mrna_strand>CTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701045" ref_strand="+" ref_description="SGN-E701045 [FA14DE08]">
      <seq>ctgttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggtggtggcacacatgatccatttgacctctttaattccttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgcttgaggacctatacaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggtttttgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="110638" stop="107584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110338" g_stop="110140" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110139" i_stop="109194" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109193" g_stop="109028" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="365" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109027" i_stop="108700" i_length="328">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108699" g_stop="108561" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="504" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108560" i_stop="108366" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108365" g_stop="108089" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="781" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108088" i_stop="107921" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107920" g_stop="107884" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="818" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E701045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110338" e_stop="110140"/>
          <exon e_start="109193" e_stop="109028"/>
          <exon e_start="108699" e_stop="108561"/>
          <exon e_start="108365" e_stop="108089"/>
          <exon e_start="107920" e_stop="107884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCC</genome_strand>
        <mrna_strand>CTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707643" ref_strand="+" ref_description="SGN-E707643 [FA33CD02]">
      <seq>ccatttcacctgagccttcaaagatgtgtatatatacaccccttttgagtccttgttggagtcaagtatttgggtgttctgttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggtggtggcacacatgatccatttgacctctttaattccttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgcttgaggacctatacaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggttttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="110715" stop="107592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110416" g_stop="110140" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110139" i_stop="109194" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109193" g_stop="109028" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="443" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109027" i_stop="108700" i_length="328">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108699" g_stop="108561" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="582" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108560" i_stop="108366" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108365" g_stop="108089" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="859" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108088" i_stop="107921" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107920" g_stop="107888" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="892" r_length="33" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E707643" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110416" e_stop="110140"/>
          <exon e_start="109193" e_stop="109028"/>
          <exon e_start="108699" e_stop="108561"/>
          <exon e_start="108365" e_stop="108089"/>
          <exon e_start="107920" e_stop="107888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTT</genome_strand>
        <mrna_strand>CCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706431" ref_strand="+" ref_description="SGN-E706431 [FA29DG07]">
      <seq>ttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggtggtggcacacatgatccatttgacctctttaattccttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgcttgaggacctatacaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacatttccctggcgaggctgatgaagcgcctgatacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="110635" stop="107789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110335" g_stop="110140" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110139" i_stop="109194" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109193" g_stop="109028" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="362" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109027" i_stop="108700" i_length="328">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108699" g_stop="108561" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="501" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108560" i_stop="108366" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108365" g_stop="108089" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="779" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108088" i_stop="107921" i_length="168">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107920" g_stop="107910" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="790" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E706431" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110335" e_stop="110140"/>
          <exon e_start="109193" e_stop="109028"/>
          <exon e_start="108699" e_stop="108561"/>
          <exon e_start="108365" e_stop="108089"/>
          <exon e_start="107920" e_stop="107910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACA-TTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGT</genome_strand>
        <mrna_strand>TTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235856" ref_strand="+" ref_description="SGN-E235856 [cLED-15-J10]">
      <seq>ggagatgaaaggatctcctgatatagagaagtgagatttcaatgcaagtgctcaaatgttctcttacgttgtattgtattggtttgtttctgtaactgcagcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcanaatggacagaaaattaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108766" stop="107813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108466" g_stop="108113" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E235856" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108466" e_stop="108113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACA</genome_strand>
        <mrna_strand>GGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCANAATGGACAGAAAATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207573" ref_strand="+" ref_description="SGN-E207573 [cLEC-32-G9]">
      <seq>tccatttgacctctttaattccttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgtttgaggacctattcaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="109374" stop="107817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109074" g_stop="109028" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109027" i_stop="108700" i_length="328">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108699" g_stop="108561" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="186" r_length="139" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108560" i_stop="108366" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108365" g_stop="108117" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="435" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E207573" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109074" e_stop="109028"/>
          <exon e_start="108699" e_stop="108561"/>
          <exon e_start="108365" e_stop="108117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAAT</genome_strand>
        <mrna_strand>TCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGTTTGAGGACCTATTCAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699545" ref_strand="+" ref_description="SGN-E699545 [FA10BH03]">
      <seq>ccgttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggtggtggcacacatgatccatttgacctctttaattccttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgcttgaggacctatacaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccaccaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccaaagaagaaagtcattgaagtccatgttgaaaaaggaatgctaaatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="110638" stop="107824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110338" g_stop="110140" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110139" i_stop="109194" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109193" g_stop="109028" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="366" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109027" i_stop="108700" i_length="328">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108699" g_stop="108561" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="505" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108560" i_stop="108366" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108365" g_stop="108124" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="747" r_length="242" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E699545" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110338" e_stop="110140"/>
          <exon e_start="109193" e_stop="109028"/>
          <exon e_start="108699" e_stop="108561"/>
          <exon e_start="108365" e_stop="108124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAA-GAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGAC</genome_strand>
        <mrna_strand>CCGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCACCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAAAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCTAAATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333652" ref_strand="+" ref_description="SGN-E333652 [cTOD-22-D16]">
      <seq>ttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggtggtggcacacatgatccatttgacctctttaattccttctttagtggaagaccttttggaggtggtggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="110635" stop="108726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110335" g_stop="110140" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110139" i_stop="109194" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109193" g_stop="109028" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="363" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E333652" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110335" e_stop="110140"/>
          <exon e_start="109193" e_stop="109028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAA-GAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG</genome_strand>
        <mrna_strand>TTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGACCTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200287" ref_strand="+" ref_description="SGN-E200287 [cLEC-12-H2]">
      <seq>tcttttcatactggtcttgaaaagaagttgaaattgacaaggatgtttggaagaggagggaaaaaaaagagtgataccacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaggatgaaatcaagaaagcttatagaaaaactgctatgaagaatcaccctgataagggcggtgatcctgaaaaggttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaacgaaggaatgggtggtggtggtggcacacatgatccattggacctctttaattcctactttagtggaagtccttttggaggtggcggtcgtacaggacaaagagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="110634" stop="108726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110334" g_stop="110140" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110139" i_stop="109194" i_length="946">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109193" g_stop="109028" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="361" r_length="166" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E200287" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110334" e_stop="110140"/>
          <exon e_start="109193" e_stop="109028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG</genome_strand>
        <mrna_strand>TCTTTTCATACTGGTCTTGAAAAGAAGTTGAAATTGACAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATACCACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAGGATGAAATCAAGAAAGCTTATAGAAAAACTGCTATGAAGAATCACCCTGATAAGGGCGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAACGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTGGACCTCTTTAATTCCTACTTTAGTGGAAGTCCTTTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281205" ref_strand="-" ref_description="SGN-E281205 [cLEL-1-C9](-)">
      <seq>gcacgagtcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaggggaaagagtgataacacaaagttttacgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="110629" stop="108789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110336" g_stop="110140" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110139" i_stop="109194" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109193" g_stop="109089" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="302" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E281205" ref_strand="-">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281205" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110336" e_stop="110140"/>
          <exon e_start="109193" e_stop="109089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGT</genome_strand>
        <mrna_strand>GCACGAGTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAGGGGAAAGAGTGATAACACAAAGTTTTACGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718487" ref_strand="+" ref_description="SGN-E718487 [FC04DC08]">
      <seq>aatcggccgaattctagagcattctccactcttttcaatttctcatttcacctgagccttcaaagatgtgtatatataccccccttttgagtccttgttggagtcaagtatttgggtgttctgttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctttgaagaatcaccctgataagggtggtgatcctgaaaaggtaatctttttgtttatttttgaagaaaggtgaagtctttgttctaatttgggagttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="110750" stop="109776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110458" g_stop="110076" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-E718487" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110458" e_stop="110076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAGAATTCTAGAGCATTCTCCACTATTCTCAATTTCTCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTT</genome_strand>
        <mrna_strand>AATCGGCCGAATTCTAGAGCATTCTCCACTCTTTTCAATTTCTCATTTCACCTGAGCCTTCAAAGATGTGTATATATACCCCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTTTGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727575" ref_strand="+" ref_description="SGN-E727575 [LA15AD09]">
      <seq>cttgaacaacaattagaacatgacgctcgtgtacgagagatcgaagagggctggtgtgacagtgttggatctgttgagcaaattcaagaaaagttgctaaagagacaagaggcagctgctaagcgtgaaagagcaatggcctatgctttagctcaccagtggcaggcaggatccaggcagcaggctacactttctgggtttgaaccagataaaagcagctggggttggaactggttagagagatggatggcagtacgcccatgggaaaatcgttttctagaccttaatgtcagagatggagtcatgcctaatgaaaatgaatcagccgaacctgtaaacgggatgaagaaccaggtaaaagttgctgggaagaaaccagcaactacaaaaccagcaactacaactctttcaaatgatagagtgggtccatctcattcaagcagtaactcaaaatcaaatgaaaaggcagcagcatcgctctctgatggttgcagttcttccccaaatgtgtcagcaagcacacaagaaacacctgcagcattagttaacaaacctaagtccaaaccaaatcgtgaagatttagttgaggaagctagttcaaaacccgtccttggttctagatcacacagcaatcctaaggagagatctactccctctgataaacaaggaaaacagagattgtctctgcctggtagcggtcttgcacctcaaacagcgagacaaccaagcagaaccatcaaaaggacatctagtacgcagaagcctttgaaagagaagtccaaattaaacgaaactgatactaagtctacagcaactgtttcacaacaagctgctgattagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="118812" stop="122562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119111" g_stop="119155" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119156" i_stop="119738" i_length="583">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="119852" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="159" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119853" i_stop="121037" i_length="1185">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121038" g_stop="121560" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="697" r_length="538" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121561" i_stop="122116" i_length="556">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122117" g_stop="122262" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="843" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E727575" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119111" e_stop="119155"/>
          <exon e_start="119739" e_stop="119852"/>
          <exon e_start="121038" e_stop="121560"/>
          <exon e_start="122117" e_stop="122262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAACAACAATTAGAACATGACGCTCGTGTACGAGAGATCGAAGTAAGCAACTTCTAAATTGTTATTACTTAAAATACCCTTGTGATTATTTCCATAGTGGCCATTACTTGTGTCAATGGCATTTATTACTAGGTTATTATATTACTAAGTTTTAATCTTACCTTTTTCGAATGAGAGGTCTCTTGATAGTGGCATCAGCTGTAAATTTGCATTTGGTTTCTGAATTATTTGCCACAGGTTTTGCTTATGGTGGATATCGTTCAACAATATATGATATGCACTGCATCATGTGAAACTTTCCTGATAGGTTCTTCATGGATGTCCCAGAAGGACTGATCGGCATCTCATCATTTGAATGTTGTGGCCAAGAAATTAGGTTATATTGTGGTTCTTGGTTGTTCTTGTCATCAGTCTCATAATATGCTTGATTTTTCCACTTTAAAGGGTGATTCAAGTTGTAGTCTTAGTAATTTTCTATTTCTCTTTTGACATGAACTTTCGTGCCAAAATGTGAAAAAAAGTTTCAAGCGTAGAAGTATGCATTGCCTGGTGGAACTTATGTGGGTACACCCACACTGTTAACATTAACATGTGTCTCACCTTTTGTTGCTGAATATTCTAACAGGAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAGGTAAGCATCTCATCATCCTTCTTGATGATGTTTTTTCTGTTTCCATTACTGTATCAGTTTTTGAACTGATATCTTGAAGGCAAAACTTCAGATTAGATAGATATAATTGAGAACCTGTAAGAGAAGCAGCTGCCTATGTAATCTTTGTATCGATATTTTGAAATATGATCTGTGTAACTGCTTCTAAGTTCAAGAATATGACCAAAAAGTGTTTTTAACTAATAGGTCATATACATGCATCAATGGTATAAGTACTAGTATAACAGCTGAGATTTTCCTGAATGCTGGTGCAATTTGGTAAGGCTAAATGTATCTGAATCTGAATATTCCATAGCATTTGTATCAGCAGTACTAGTAGAGAAAAACTCAGAACCCTCATATATAAACAAACAACAAACATACCCAGTTTTATCCCACAAGTGGGGTCTAAGGAGGGTAAGTTGCACACAAACTTTATCCCTACCCCTACCTATGTGGGGATAGAGAGTGATATTTCCGATAGACCCCTCTTATATGTAGCTCATATTGGTAATTGTTGGGTCTTCTCTTTATTTCCTTTGCTATATGCTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTTAGCAAGGTTCCATACTTTCATTTCAATGCGCCTACCTTTTCTTTTTTCTTATTGAACTCTATTTGGTGCTGCAGTGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCT-GG--G--A--AG-------A-AACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACAAGGAAAACAGAGATTGTCTCTGCCTGGTAGCGGTAAGTCATCTCTCTCTCTCTTTCTTGTTTAATGATATTGCCTTGTGTAAGACGCTGGAAATGTTACACAATATAGACCCTCTTTGTTTTGCCCACTTCTTCTTGTTTGGCATAAAGATCGAAATATTGTTAATTGAAATTACCGTCTCCTCTATAAATAACCCTATCAATAAGCAAAAGTAGCACTGTAACTTGTTTAATGTTTCTCTGCGAAGCCCTCACAGAGGTAATGAATTTCGGAATGCTATGCTGAAGGAAAATTATTTATAAAAATTTTGTACTTATTTTTCACTTTTATTTTATTCAAGTACGATGATGATGTGAAATTTAGATAAATGAAGAACTGTCGACCCCAACGTGTTTGGACTGAGGCATAGTTGTTGTTGTCGCTATGCCGAAGGAATGGGCATGAACAGATCTTTATAATATTCGTACGTCTTTTCAGACAAATATGGTAGTGAGAGTGACAACACATATTCTGTAACCACACTAGTGTGTTGAAATATTCCTGCAACTAGTGCCGTATGCACTAATTTTTACGACATCTTTTTTCCAGGTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACCAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTT</genome_strand>
        <mrna_strand>CTTGAACAACAATTAGAACATGACGCTCGTGTACGAGAGATCGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACAAGGAAAACAGAGATTGTCTCTGCCTGGTAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAAGAGAAGTCCAAATTAAACGAAACTGATACTAAGTCTACAGCAACTGTTTCACAACAAGCTGCTGATTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375375" ref_strand="+" ref_description="SGN-E375375 [TUS-15-D14]">
      <seq>gagatcgaagagggctggtgtgacagtgttggatctgttgagcaaattcaagaaaagttgctaaagagacaagaggcagctgctaagcgtgaaagagcaatggcctatgctttagctcaccagtggcaggcaggatccaggcagcaggctacactttctgggtttgaaccagataaaagcagctggggttggaactggttagagagatggatggcagtacgcccatgggaaaatcgttttctagaccttaatgtcagagatggagtcatgcctaatgaaaatgaatcagccgaacctgtaaacgggatgaagaaccaggtaaaagttgctgggaagaaaccagcaactacaactctttcaaatgatagagtgggtccatctcattcaagcagtaactcaaaatcaaatgaaaaggcagcagcatcgctctctgatggttgcagttcttccccaaatgtgtcagcaagcacacaagaaacacctgcagcattagttaacaaacctaagtccaaaccaaatcgtgaagatttagttgaggaagctagttcaaaacccgtccttggttctagatcacacagcaatcctaaggagagatctactccctctgataaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="119434" stop="121828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119739" g_stop="119852" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="123" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119853" i_stop="121037" i_length="1185">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121038" g_stop="121528" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="614" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E375375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119739" e_stop="119852"/>
          <exon e_start="121038" e_stop="121528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAGGTAAGCATCTCATCATCCTTCTTGATGATGTTTTTTCTGTTTCCATTACTGTATCAGTTTTTGAACTGATATCTTGAAGGCAAAACTTCAGATTAGATAGATATAATTGAGAACCTGTAAGAGAAGCAGCTGCCTATGTAATCTTTGTATCGATATTTTGAAATATGATCTGTGTAACTGCTTCTAAGTTCAAGAATATGACCAAAAAGTGTTTTTAACTAATAGGTCATATACATGCATCAATGGTATAAGTACTAGTATAACAGCTGAGATTTTCCTGAATGCTGGTGCAATTTGGTAAGGCTAAATGTATCTGAATCTGAATATTCCATAGCATTTGTATCAGCAGTACTAGTAGAGAAAAACTCAGAACCCTCATATATAAACAAACAACAAACATACCCAGTTTTATCCCACAAGTGGGGTCTAAGGAGGGTAAGTTGCACACAAACTTTATCCCTACCCCTACCTATGTGGGGATAGAGAGTGATATTTCCGATAGACCCCTCTTATATGTAGCTCATATTGGTAATTGTTGGGTCTTCTCTTTATTTCCTTTGCTATATGCTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTTAGCAAGGTTCCATACTTTCATTTCAATGCGCCTACCTTTTCTTTTTTCTTATTGAACTCTATTTGGTGCTGCAGTGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACA</genome_strand>
        <mrna_strand>GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204215" ref_strand="+" ref_description="SGN-E204215 [cLEC-13-B17]">
      <seq>gagatcgaagagggctggtgtgacagtgttggatctgttgagcaaattcaagaaaagttgctcaagagacaagaggcagctgctaagcgtgaaagagcaatggcctatgctttagctcaccagtggcaggcaggatccaggcagcacgctacactttctgggtttgaaccagataaaagcagctggggttggaactggttagagagatggatggcagtacgcccatgggaaaatcgttttctagaccttaatgtcagagatggagtcatgcctaatgaaaatgaatcagccgaacctgtaaacgggatgaagaaccatgtaaaagttgctgggaagaaaccagcaactacaactctttcaaatgatagagtgggtccatctcattcaagcagtaactcagaatcaaatgaaaaggcagcagcatcgctctctgatggttgcagttcttccacaaatgtgtcagcaagcacacaagaaacacctgcagcattagttaacaaacctaagtccaaaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="119434" stop="121732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119739" g_stop="119852" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="123" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119853" i_stop="121037" i_length="1185">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121038" g_stop="121432" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="518" r_length="395" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E204215" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119739" e_stop="119852"/>
          <exon e_start="121038" e_stop="121432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAGGTAAGCATCTCATCATCCTTCTTGATGATGTTTTTTCTGTTTCCATTACTGTATCAGTTTTTGAACTGATATCTTGAAGGCAAAACTTCAGATTAGATAGATATAATTGAGAACCTGTAAGAGAAGCAGCTGCCTATGTAATCTTTGTATCGATATTTTGAAATATGATCTGTGTAACTGCTTCTAAGTTCAAGAATATGACCAAAAAGTGTTTTTAACTAATAGGTCATATACATGCATCAATGGTATAAGTACTAGTATAACAGCTGAGATTTTCCTGAATGCTGGTGCAATTTGGTAAGGCTAAATGTATCTGAATCTGAATATTCCATAGCATTTGTATCAGCAGTACTAGTAGAGAAAAACTCAGAACCCTCATATATAAACAAACAACAAACATACCCAGTTTTATCCCACAAGTGGGGTCTAAGGAGGGTAAGTTGCACACAAACTTTATCCCTACCCCTACCTATGTGGGGATAGAGAGTGATATTTCCGATAGACCCCTCTTATATGTAGCTCATATTGGTAATTGTTGGGTCTTCTCTTTATTTCCTTTGCTATATGCTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTTAGCAAGGTTCCATACTTTCATTTCAATGCGCCTACCTTTTCTTTTTTCTTATTGAACTCTATTTGGTGCTGCAGTGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAA</genome_strand>
        <mrna_strand>GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTCAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGCAGGATCCAGGCAGCACGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCATGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAGAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCACAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366582" ref_strand="+" ref_description="SGN-E366582 [cLPT-13-M8]">
      <seq>ctacttgggtcttttctcttcatttttttgtatatgctatgtgtgtactcaaggacacatggtgcctctagtcagaattcaggaacaactatggaagaataaaaatagctgtcaatactgtggtatcattttatgatactggttaggcaggacatggtgaacctttagcttacttaggatatgaccttatattggagggtgtggaggtaaaaaattcgggtagaaggctagtagtaaatagtttctcatcttgtcctctcctgatagtagtattagtatgatttttcagtatttaatattgctttaatatttccatatttctcattcttagttttctataactagtctcgtatgcctctattttcttactagcttgcagttgttactgcttgtcttcataaatgttgtgttttagggtctattggaagcagcctctctacctgccaaggtaggggtaaggtctgtgacactaccctcctcagatctcacacttgggtaagttggcgttggtgttgtttgttggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="120120" stop="121263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120420" g_stop="120963" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E366582" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.034" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120420" e_stop="120963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTGGGTCTTTTCTCTTCATTTTTTT-TATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTT</genome_strand>
        <mrna_strand>CTACTTGGGTCTTTTCTCTTCATTTTTTTGTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAATTCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAACCTTTAGCTTACTTAGGATATGACCTTATATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGCTAGTAGTAAATAGTTTCTCATCTTGTCCTCTCCTGATAGTAGTATTAGTATGATTTTTCAGTATTTAATATTGCTTTAATATTTCCATATTTCTCATTCTTAGTTTTCTATAACTA---GTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATG-T-TG----TG--TT--TT------AGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCTCACACTTGGGTAAGTTGGCGTTGGTGTTGTTTGTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E375374" ref_strand="+" ref_description="SGN-E375374 [TUS-15-D14](-)">
      <seq>aaggaaaaacaaagattgtctttgcctggtagcggtcttgcacctcaaacagcgagacagccaagcagaaccatcaaaaggacatctagtacgcagaagcctttgaaggagaagtccaaattaaacgaaactgataccaagtctacagcaactgtttcacaacaggctgctgattagtttttaggtactcgttgaagatcccgatctcagaaccaagtgtcacccttgcttgtaaatacagggaaccttcttaaaggggagtgatggtatgttgtccacggcagagttaaaaggagataggcttgctgccatctcctgaataacatcttcgcatttgtttcaattcttgtcataattcgtgtaatttatataatagcgcgttgttttctttacccctcctccctcccagtgtaaaaaagaggatgaatttgctttttgtgccacttttcttgagctgaaaactggggaatttggtgagtttgattgccaatttctttgttgtgtgttgtacaagatctgaatgtaggattcattcattaatctagagattgtagaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="121806" stop="122942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122117" g_stop="122648" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="566" r_length="532" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E375374" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122117" e_stop="122648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACCAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTTTTAGGTACTCGTTGAAGATCCCGATCTCAGAACCAAGTGTCACCCTTGCTTGTAAATACAGGGAACCTTCTTAAAGGGGAGTGATGGTATGTTGTCCACGGCAGAGTTAAAAGGAGATAGGCTTGCTGCCATCTCCTGAATAACATCTTCGCATTTGTTTCAATTCTTGTCATAATTCGTGTAATTTATATAATAGCGCGTTGTTTTCTTTACCCCTCCTCCCTCCCAGTGTAAAAAAGAGGATGAATTTGCTTTTTGTGCCACTTTTCTTGAGCTGAAAACTGGGGAATTTGGTGAGTTTGATTGCCAATTTCTTTGTTGTGTGTTGTACAAGATCTGAATGTAGGATTCATTCATTAATCTAGAGATTGTAGACCATATTGTGC</genome_strand>
        <mrna_strand>GTCTTGCACCTCAAACAGCGAGACAGCCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACCAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTTTTAGGTACTCGTTGAAGATCCCGATCTCAGAACCAAGTGTCACCCTTGCTTGTAAATACAGGGAACCTTCTTAAAGGGGAGTGATGGTATGTTGTCCACGGCAGAGTTAAAAGGAGATAGGCTTGCTGCCATCTCCTGAATAACATCTTCGCATTTGTTTCAATTCTTGTCATAATTCGTGTAATTTATATAATAGCGCGTTGTTTTCTTTACCCCTCCTCCCTCCCAGTGTAAAAAAGAGGATGAATTTGCTTTTTGTGCCACTTTTCTTGAGCTGAAAACTGGGGAATTTGGTGAGTTTGATTGCCAATTTCTTTGTTGTGTGTTGTACAAGATCTGAATGTAGGATTCATTCATTAATCTAGAGATTGTAGACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212243" ref_strand="+" ref_description="SGN-E212243 [cLEC-75-D23]">
      <seq>ttctgttgcttcacttctttcacttcaatctttctccattaatggtgattttgctgtaacaagaaaatatgttcagattatctgtagttatcccttttcttactcttctcatttctgttcttattctcttcttattaggaccaaaaatcctcttacctcgacaaatctccatttctgtacccgatgaactcgacgatctttcactttttcacaaagcaattgctgctgaaaccacttttccgaaacacccatctcacaaaaaactccgtcttggatccgctactgttcgtccaccaaaaatcgcatttatgttcttaacaaattcagatttgaagttttccccaatttgggagaagttcttcaatggtactaaacctgtagatccacatctatacaatatctacatacacgctgacccatctatcaagatttcacctttaatgggtgtttttaaagatcgattaattccggcgaagagaactcaacgttcatcgccgacactcatatctgctgcccggagattacttgctcatgctttacttgacgacccatcaaactcgtatttcgctcttatctcacaacattgtatacctttacactcttttaattacttttacaattttttacttgatacccagaaattgtcgaggaaaatggagttccctagttatattgagattnctgatgaatctgattcgttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="125062" stop="126364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125362" g_stop="126064" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E212243" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125362" e_stop="126064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTCTTGATGAATCTGATTCGTTATT</genome_strand>
        <mrna_strand>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTNCTGATGAATCTGATTCGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298204" ref_strand="+" ref_description="SGN-E298204 [cLEW-9-M23]">
      <seq>atcccttgacttactcttctcatttctgcacttattctcttcttattaggaccaaaaatcctcttacctcgacaaatctccatttctgtacccgatgaactcgacgatctttcactttttcacaaagcaattgctgctgaaaccacttttccgaaacacccatctcacaaaaaactccgtctaggatccgctactgttcgtccaccaaaaatcgcatttatgttcttaacaaattcagattggaagttttccccaatttgggagaagttcttcaatggtgctaaacctgtagatccacatctatacaatatctacatacacgctgacccatctatcaagatttcacctttaatgggtgtttttcaagatcgattaattccggcgaagagaactcaacgttcatcgccgacactcatatctgctgcccggagattacttgctcatgctttacttgacgacccatcaaactcgtatatcggtcttatctcacaacattgtatacctttacactcttttaattactttcacaattttttacttgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="125151" stop="126295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125451" g_stop="125995" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E298204" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125451" e_stop="125995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATAC</genome_strand>
        <mrna_strand>ATCCCTTGACTTACTCTTCTCATTTCTGCACTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTAGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTGGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTGCTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTCAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATATCGGTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTCACAATTTTTTACTTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700151" ref_strand="+" ref_description="SGN-E700151 [FA12BB08]">
      <seq>attgagattcttgatgaatctgattccttattagataggtatgatgcgaaagggaataatataatggaacctgaggtgaaatttgaggaatttaaagttggttcacagttttttgtgttaacaagaaagcattctttaatggtgattaaagataggaagttatggaggaaatttagaaaaccatgtttaaatgttgagtcttgttatccagaagagcattattttcctactttgttatcaatggaggatcctaatggttgtaccaagtatacattgacaaatgtgaattggactgatacagttgatggtcatccacatacttatcatccttctgaggtttcttcaaagctgatttatgatcttagagagtcaaattctacatattcatacatgtttgcaaggaaattttcacctgattgcttgaaccctttgatggaaatggcagagtcagtcatcttcaaggactagttcttgcttgaggcaatggtgagatgatgaaggagtgaagacaaatcaaaggcaaaaactttgatgatgttgtgaggacaaaaaaagattggtttgttgtgtacgagtaacacatgtggaaataaggtttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="125733" stop="128131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126033" g_stop="126518" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126519" i_stop="127712" i_length="1194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127713" g_stop="127831" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="605" r_length="119" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E700151" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126033" e_stop="126518"/>
          <exon e_start="127713" e_stop="127831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGATTCTTGATGAATCTGATTCGTTATTAGATAGGTATAATGCAAGAGGGAAGAATATAATGGAACCTGAGGTGAAATTTGAGGAATTTAAAGTTGGTTCACAGTTTTTTGTGTTAACAAGAAAGCATTCTTTAATGGTGATCAAAGATAGGAAGTTATGGAGGAAATTTAGAAAACCATGTTTAAATGTTGAGTCTTGTTATCCAGAAGAGCATTATTTTCCTACTTTGTTATCAATGGAGGATCCTAATGGTTGTACCAAGTATACATTGACAAATGTGAATTGGACTGATACAGTTGATGGTCATCCACATACTTATCATCCTTCTGAGGTTTCTTCAAAGCTGATTTATGATCTTAGAGAGTCAAATTCTACATATTCATACATGTTTGCAAGGAAATTTTCACCTGATTGCTTGAACCCTTTGATGGAAATGGCAGAGTCAGTCATCTTCAAGGACTAGTTCTTGCTTGAGGCAATGGTAAGTGATGATTGCATACTTTCTTTTTTTCTCATTGAATTGACTTAGGTTTTACTGAGTTTTCCTTGTAGAATTAGGGAGTTTAGTTAGTACTTGTGTAGGTGTGAGGTAGCGAGTACCTTGTGAGATTAATTGCGACTAAGCTGATCCAAACACCATGATTCGATCGTTTGTTTGTGAGATTAATTGCGACTAAGTTGATCCAAACACCATGATTCAATCGTTTGTTTACTGTCCTTTTAAAGTATGTGTCTTTCCTTTTTTTTTGATATTTTTTAGTTCTAACAATTCACATTCACATGACATGTTTAAGAATACGTAGCATTTTAGTACTTCCTATGTATCTTTAGTACATGACCACAAAGTCTTTCTTACTTTCTTTTACTTTTGTAAACTTCATGCGAAGTTTAAATGAAAATCGGACAAACAAGTTGAAACGGAGGGAGTAAAGGAAATTAGGTTTTTTTTTGAAATGGATGGTTGTGATATAATATTCTAGAAGTGATGTTGGAATTGATAGGTTAACAATGCTTTTAATAGAACTTGACTATTTTGTTGGTGAATAGGTCTCTTCAATATGGCATATTTTTCTTATGAGGCATTATTTCAATCTTAACTAGGTGGGATTTTCATTTGATAAAGTCTTAAACTTTAGCATATTCATGTGAAAATTGGAATTTTTTTCTTAAAAGATACTTGTTGTGGTAGTAGTTTTGCCACTTACAAGTAGTAGTTGTGAAGGTTTTACAGATTCTTTGTATGATATTTTTTGGATGGTATGTAGCTATCCCTTATGACACATCTAACAAGAAATTTACAACTTTCACATGTGACACATTTTCTTTTTTCATTTGCACACTTTTGATTAGTCAAACTCTTGAATATACTATAGTATGAAATCTTGAAAATGTTGCACCTTGTCTTTGTATGTCACACCTCATCTCTTATGCCACTTTGTCTTGAACTAAAGGCAAATGAAAGGACAAGATAAAGAACAATAATTGATCAATTGTGTACTCTATTATATTTTAATCTTGATTTGAAGTTTGGACAAGTGTCTTAATCATCATTTAGAAAATTAGGAGGTTGGTTTGGTATATTTGAAGTCTAATACACCCCTATATGTCAAATGAAGCAATGAGATAGTGATTTAAAACTGACCATTGTTTTGTTTTATCTTATATTTTATAATAGGTGAGATGATGAAGGAGTGAAGACAAATCAAAGGCAAAAACTTTGATGATGTTGTGAGGACAAAAAAAGATTGGTTTGTTGTGTAGGAGTAACACATGTGGAAATAAGGTATTTTTTTT</genome_strand>
        <mrna_strand>ATTGAGATTCTTGATGAATCTGATTCCTTATTAGATAGGTATGATGCGAAAGGGAATAATATAATGGAACCTGAGGTGAAATTTGAGGAATTTAAAGTTGGTTCACAGTTTTTTGTGTTAACAAGAAAGCATTCTTTAATGGTGATTAAAGATAGGAAGTTATGGAGGAAATTTAGAAAACCATGTTTAAATGTTGAGTCTTGTTATCCAGAAGAGCATTATTTTCCTACTTTGTTATCAATGGAGGATCCTAATGGTTGTACCAAGTATACATTGACAAATGTGAATTGGACTGATACAGTTGATGGTCATCCACATACTTATCATCCTTCTGAGGTTTCTTCAAAGCTGATTTATGATCTTAGAGAGTCAAATTCTACATATTCATACATGTTTGCAAGGAAATTTTCACCTGATTGCTTGAACCCTTTGATGGAAATGGCAGAGTCAGTCATCTTCAAGGACTAGTTCTTGCTTGAGGCAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATGATGAAGGAGTGAAGACAAATCAAAGGCAAAAACTTTGATGATGTTGTGAGGACAAAAAAAGATTGGTTTGTTGTGTACGAGTAACACATGTGGAAATAAGGTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395940" ref_strand="+" ref_description="SGN-E395940 [TUS-18-L1]">
      <seq>ttttttttgaagggtttgttgaaaaacaacaatgccttcaaaccaagtaaatcccaaaagggaagtatccaaaactcaaagtttggatgagctttcaaagaaaagcaatggaaaagctagttttagtagtagtagttgagctggtaatttgatgatgtaaaacatgtcttagttgtagcatctagtattcatttggtgtttgtgtgtgttgctctctatattgttcggattcatcatgaataccgtccagagtgtgtctgatcctctaaaagctatgcttttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="127524" stop="128411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127824" g_stop="128110" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E395940" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127824" e_stop="128110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAA</genome_strand>
        <mrna_strand>TTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCATCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231470" ref_strand="+" ref_description="SGN-E231470 [cLED-4-E20]">
      <seq>tttttttgaagggtttgttgaaaaacaacaatgccttcaaaccaagtaaatcccaaaagggaagtatccaaaactcaaagtttggatgagctttcaaagaaaagcaatggaaaagctagttttagtagtagtagttgagctggtaatttgatgatgtaaaacatgtcttagttgtagcatctagtattcatttggtgtttgtgtgtgttgctctctatattgttcggattcttcatgaataccgtccagagtgtgtctgatcctctaaaagctatgctttttttaaagatctgatacgaatgtgacaacaattttggagggtcggagcaatatgggttttgctttgtacatagatggcaagtatatatgtgttttagggagagattagccttgaacaaaatcaagaaaagtgctaaactctattgtttnttttatttttctactacttgtggaaatgaatcattgtatcaaaacatttactatccaatgtagtaaatgatttttagagaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="127525" stop="128635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127825" g_stop="128340" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E231470" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127825" e_stop="128340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAAATTTTC</genome_strand>
        <mrna_strand>TTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTNTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289906" ref_strand="+" ref_description="SGN-E289906 [cLET-9-I24]">
      <seq>tcatttggtgtttgtgtgtgttgctctctatattgttcggattcttcatgaataccgtccagagtgtgtctgatcctctaaaagctatgctttttttaaagatctgatacgaatgtgacaacaattttggagggtcggagcaatatgggttttgctttgtacatagatggcaagtatatatgtgttttagggagagattagccttgaacaaaatcaagaaaagtgctaaactctattggtttttttatttttctactacttgtggaaatgaatcattgtatcaaaacatttactatccaatgtagtaaatgatttttagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="127712" stop="128635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128012" g_stop="128334" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E289906" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128012" e_stop="128334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAA</genome_strand>
        <mrna_strand>TCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGGTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260983" ref_strand="+" ref_description="SGN-E260983 [cLEG-55-P12]">
      <seq>tggaaaggaggagaagagagcggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgttaatcttcccaatcccggttgatcctccactggtttcattttttggctaaattgtctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="131919" stop="134908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132219" g_stop="132413" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132414" i_stop="134003" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134004" g_stop="134608" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="800" r_length="605" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E260983" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132219" e_stop="132413"/>
          <exon e_start="134004" e_stop="134608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTG</genome_strand>
        <mrna_strand>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGGTTTCATTTTTTGGCTAAATTGTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261534" ref_strand="+" ref_description="SGN-E261534 [cLEG-57-I8]">
      <seq>gaaaggaggagaagagagcggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="131921" stop="134755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132221" g_stop="132413" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132414" i_stop="134003" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134004" g_stop="134455" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="645" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E261534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132221" e_stop="132413"/>
          <exon e_start="134004" e_stop="134455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGA</genome_strand>
        <mrna_strand>GAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322323" ref_strand="+" ref_description="SGN-E322323 [cTOB-24-G10]">
      <seq>cggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="131939" stop="134828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132239" g_stop="132413" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132414" i_stop="134003" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134004" g_stop="134528" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="700" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E322323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132239" e_stop="132413"/>
          <exon e_start="134004" e_stop="134528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTC</genome_strand>
        <mrna_strand>CGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357275" ref_strand="+" ref_description="SGN-E357275 [cTOS-23-E11]">
      <seq>ggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcattgccaccccaatcacataagaaagaaaattagaggaaaaagtaataacagagtgaaacataatgctaatgtttatgtatttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="131940" stop="135337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132240" g_stop="132413" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132414" i_stop="134662" i_length="2249">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134663" g_stop="135044" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="556" r_length="382" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E357275" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132240" e_stop="132413"/>
          <exon e_start="134663" e_stop="135044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGG</genome_strand>
        <mrna_strand>GGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339659" ref_strand="+" ref_description="SGN-E339659 [cTOE-16-E9]">
      <seq>ttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="131957" stop="134758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132257" g_stop="132413" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132414" i_stop="134003" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134004" g_stop="134458" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="612" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E339659" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132257" e_stop="132413"/>
          <exon e_start="134004" e_stop="134458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTA</genome_strand>
        <mrna_strand>TTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720632" ref_strand="+" ref_description="SGN-E720632 [FC11BE03]">
      <seq>acctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcattgccaccccaatcacataagaaagaaaattagaggaaaaagtaataacacagtgaaacataatgctaatgtttatgtatttttcaaaatctatgggtccttgctttgtctctcatttgtgtcgttttaatctttacgttagttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="131962" stop="135396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132262" g_stop="132413" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132414" i_stop="134662" i_length="2249">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134663" g_stop="135096" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="586" r_length="434" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E720632" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132262" e_stop="132413"/>
          <exon e_start="134663" e_stop="135096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGTTTTAATCTTTATGTTAGTTGAAA</genome_strand>
        <mrna_strand>ACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACACAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATCTATGGGTCCTTGCTTTGTCTCTCATTTGTGTCGTTTTAATCTTTACGTTAGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357911" ref_strand="+" ref_description="SGN-E357911 [cTOS-24-P1]">
      <seq>aatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcattgccaccccaatcacataagaaagaaaattagagggaaaagtaataacagagtgaaacataatgctaatgtttatgtatttttcaaaatttatgggtcttgctttgtatctcatttgtgtcgttttaatcttttatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="131969" stop="135387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132269" g_stop="132413" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132414" i_stop="134662" i_length="2249">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134663" g_stop="135088" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="571" r_length="426" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E357911" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132269" e_stop="132413"/>
          <exon e_start="134663" e_stop="135088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGTTTTAATC-TTTATGTT</genome_strand>
        <mrna_strand>AATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGGAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGG-TCTTGCTTTGTATCTCATTTGTGTCGTTTTAATCTTTTATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357429" ref_strand="+" ref_description="SGN-E357429 [cTOS-23-P16]">
      <seq>atttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcattgccaccccaatcacataagaaagaaaattagaggaaaaagtaataacagagtgaaacataatgctaatgtttatgtatttttcaaaatttatgggttcttgctttgtatctcatttgtgtcgntttaatctttatgttagttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="131970" stop="135396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132270" g_stop="132413" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132414" i_stop="134662" i_length="2249">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134663" g_stop="135102" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="584" r_length="440" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E357429" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132270" e_stop="132413"/>
          <exon e_start="134663" e_stop="135102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGTTTTAATCTTTATGTTAGTTGAAATTGATT</genome_strand>
        <mrna_strand>ATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGNTTTAATCTTTATGTTAGTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270331" ref_strand="+" ref_description="SGN-E270331 [cLEM-1-C13]">
      <seq>gaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttacccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="131979" stop="134492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132279" g_stop="132413" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132414" i_stop="134003" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134004" g_stop="134192" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="324" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E270331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132279" e_stop="132413"/>
          <exon e_start="134004" e_stop="134192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTT</genome_strand>
        <mrna_strand>GAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370631" ref_strand="+" ref_description="SGN-E370631 [TUS-27-E18]">
      <seq>gtatacacaaagagaagagaagaggaacgacaacaaatacatcgaagaaaatatatgggatcgactgattcagaattggattcagtttttcaggataacaagcgtaatcgtaatcgtcttagttccgatcggaggctcagccggtacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtaataccatggctctaccacaaggcattaagcttacaattgaacgcaacaactctttttcaagtttcctcgttcatttgctccccaccttactaagtttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagagaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="131988" stop="134849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132288" g_stop="132413" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132414" i_stop="134003" i_length="1590">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134004" g_stop="134549" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="678" r_length="547" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E370631" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132288" e_stop="132413"/>
          <exon e_start="134004" e_stop="134549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GT-TACACAAAGAGAAGAGAAGAAGAACGAAAACAAATA-A-CGAAGAAAAT-TATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTT-GTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAAC-CAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTT</genome_strand>
        <mrna_strand>GTATACACAAAGAGAAGAGAAGAGGAACGACAACAAATACATCGAAGAAAATATATGGGATCGACTGATTCAGAATTGGATTCAGTTTTTCAGGATAACAAGCGTAATCGTAATCGTCTTAGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCTCAGCCGGTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAATACCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACGCAACAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTACTAAGTTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAGAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300076" ref_strand="+" ref_description="SGN-E300076 [cLEW-11-C4]">
      <seq>aattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="132034" stop="134754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132334" g_stop="132413" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132414" i_stop="134003" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134004" g_stop="134454" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="531" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E300076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132334" e_stop="132413"/>
          <exon e_start="134004" e_stop="134454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATG</genome_strand>
        <mrna_strand>AATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329869" ref_strand="+" ref_description="SGN-E329869 [cTOD-3-F14]">
      <seq>ccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="133713" stop="134814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134013" g_stop="134514" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E329869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134013" e_stop="134514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCT</genome_strand>
        <mrna_strand>CCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352294" ref_strand="+" ref_description="SGN-E352294 [cTOS-9-G11]">
      <seq>tcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgttaatcttcccaatcccggttgatcctccactgtttcaattttttggctaaattgtctctgaacactctcaactcatattctgtttgtgcaatttatgactttgcgaaatttcaggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="133965" stop="135250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134265" g_stop="134950" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E352294" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134265" e_stop="134950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATT</genome_strand>
        <mrna_strand>TCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGG-AAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354175" ref_strand="+" ref_description="SGN-E354175 [cTOS-16-E9]">
      <seq>tcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgttaatcttcccaatcccggttgatcctccactgtttcaattttttggctaaattgtctctgaacactctcaactcatattctgtttgtgcaatttatgactttgcgaaatttcaggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="133965" stop="135142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134265" g_stop="134842" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E354175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134265" e_stop="134842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTG</genome_strand>
        <mrna_strand>TCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370630" ref_strand="+" ref_description="SGN-E370630 [TUS-27-E18](-)">
      <seq>aatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttgtgctgccttactttcctgtgagatatcgttcatgttaatcttcccaatcccggttgatcctccactgtttcaattttttggataaattgtctttgaacactttcaactcatattctgtttgtgcaatttatgactttgcgaaatttcaggtgcatttctcactgcaggagtgctctctgccggactcattagtttcaagcggggaaattgtcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcattgatggttggttcagcatattactatggagataatttcaagcgcgttggatgaatgaatgaatgactaccaaacgactccctcattagtctgtcataagttgattttttgctgggaaaaaatgattccatatcctgttaggatgcagtttctttacatggctgtctttgccaccccaatcacataagaaagaaaatgtagaggaaaaagtaataacagagtgataacataatgataatgtttatgtatttttcaaaatttatggggtcttgttagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="134056" stop="135358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134356" g_stop="135050" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E370630" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134356" e_stop="135050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAAT-TAGAGGAAAAAGTAATAACAGAGTGA-AACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTT</genome_strand>
        <mrna_strand>AATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTGTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGATAAATTGTCTTTGAACACTTTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCTCTGCCGGACTCATTAGTTTCAAGCGGGGAAATTGTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCATTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGTTGGATGAATGAATGAATGACTACCAAACGACTCCCTCATTAGTCTGTCATAAGTTGATTTTTTGCTGGGAAAAAATGATTCCATATCCTGTTAGGATGCAGTTTCTTTACATGGCTGTCTTTGCCACCCCAATCACATAAGAAAGAAAATGTAGAGGAAAAAGTAATAACAGAGTGATAACATAATGATAATGTTTATGTATTTTTCAAAATTTATGGGGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746581" ref_strand="+" ref_description="SGN-E746581 [GI|47104169]">
      <seq>gtgacatggtaggtagtgggttacctttttgttgagctacagccatggaagctattttgaagaagaagacaaagtgcgaaggacaaattatcaattttttcagtaagaaaaaaaaaaaaagccgaaagattctgaggatcaatagttagttcaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtctggaaaataagggtcgagttgccagatgcctacccttataagtctccttccattgggtttctcaacaaaatattccaccctaatgtggatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgttttcgaggtttttctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcagtatgagcaaaaagtgaaagagtattgtgaacggtacgcaaagaaggagaatgtcgttggcacaccaaaagatgatagtgatgatgagattagtgaagaggagttcagtggacagagcgaaagcgatgatgaagttgttggacatgctgatccttgagtgaatagactaggatcctaaatggagatcatgtttttagttcatttttctccttacatgtaatatccgattcgtcgtcgcatgtaaatctaggtgccaaagatagtttagggacaatatacataacctacagatgtgtgatgaatctcagtctgtgtagaaactctctaccttattgtcaatgtaacttaccaatatatgtgttaaaattcaggttcttgttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="135600" stop="140178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135900" g_stop="136025" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136026" i_stop="137288" i_length="1263">
            <donor d_prob="0.985" d_score="0.83"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137289" g_stop="137359" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="199" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137360" i_stop="137536" i_length="177">
            <donor d_prob="0.199" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137537" g_stop="137616" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="279" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137617" i_stop="138493" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138494" g_stop="138608" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="394" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="138609" i_stop="138820" i_length="212">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="138821" g_stop="138873" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="447" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="138874" i_stop="139302" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139303" g_stop="139431" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="576" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="139432" i_stop="139511" i_length="80">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.642" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="139512" g_stop="139878" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="941" r_length="365" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="942" polyA_stop="955"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E746581" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135900" e_stop="136025"/>
          <exon e_start="137289" e_stop="137359"/>
          <exon e_start="137537" e_stop="137616"/>
          <exon e_start="138494" e_stop="138608"/>
          <exon e_start="138821" e_stop="138873"/>
          <exon e_start="139303" e_stop="139431"/>
          <exon e_start="139512" e_stop="139878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACATGGTAGGTAGTGGGTTACCTTTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAATTTCTCAATTTTTTCAG-AAG--AAAAAAAAAAAGCCGAAAGGTAAACGCATAGTAATCAAAGCCACGTAGCTGTTAGTATCATTCTTTTGTATATATACAATGCACGTGCCTTTTTTCAACTCTGTAACTCTGCCTAATGCCCCAACATGTCGACACCTTTCCCTTTTATATATATATAGAGAAGAAATTTTATTTATCTTTTTCTTTCATGTTCAGATCTTGTTGCATAATCCTCCTAGTTAAGTGTAAATTTGATTTTTGACGTGTGTAGATTTGTTTCTTGTTGTGTTTTTTTATGAAGAAATGAAATTGATTTTGATTTTATTGTGGATGGGGTACTTTTTTATTTGATGGGTGTGGTTTTTTTTGGCTAAAGTTTTGATCTTTTTCAATTTGGTTTTCATCTAATCTAATTTAATTTTTGTGCATTGCTAAGACTTAGTGTGTATCTTTGAATGTTGTGATTCTTTTAGTTTTAATTAATTGTTATGTGTAGTGGTTTCTTGGAATGGATTTGTGTGTTTTGAGGATTCAAGTTTGTGACTTTCTTTTTTTTTTTAATAAGCTTGCGTTCTCCTTGACTAATTCCACGGGTAGGTAGTTGTTATTGCTCCCACTAGGCTTGGACAAATGAGAATAAATCACTTAGTGTTTGTAAAGTGGTGGTTAGATTATCTACGGGGTGGAGTGTTGGTCGATCAAGAACTTGCACCTCTTGAAAATGAGCGTAGTGGAGAATGAGGATGTTGAGATGGATACATGAGCATATTAGGAGAGATTAGAATTAAGAAAGAAGCTATTCAGGACTAGGTGGGAGTGGCCTACATGGTGTAAGATGAGGGAGGTGAGATTGAGATAGTTTGGGCGTCTGAAGAGAAGATGCACATATGCCCCAATGATGAGGTGTCTGGTTGACTATTTTGGTATAAGGGGAGGTAGAGGTAGAACCGCAGAAATCTTGGGAAAGGTGAGTAGACATGACATACCACACCTTTAGTTTATCGATGACATGATCATAGATAGGAAGATATGGAGGTCGAGGATTGGGGTAGAAGGTTAGTAGGTAGTCGAGCATTATCTAGTTCCCTTATTTGCTGCAGTTACTGTATTATCCGTCGTTGTTGTAACCATTTATTTCTTATGCTCTTTCATAAACAGACGCGTAATTGCTGATCTCGTTGTTTGGTTTCTGTTTTTACATCTTTTTTACTGAACTTACGAACTTATATGTTGAATCCTGTTTTTACATCTTTTTTACTGAACTTACGAACTCATATGTTGAATCCTTGGCTTCATTCCGCAGATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAAACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTGTTAAAAATTCAGGTTCTTGTTTTAAA</genome_strand>
        <mrna_strand>GTGACATGGTAGGTAGTGGGTTACC-TTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAAATTATCAATTTTTTCAGTAAGAAAAAAAAAAAAAGCCGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAGGATCAATAGTTAGTTCAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTCTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTATAAGTCTCCTTCCATTGGGTTTCTCAACAAAATATTCCACCCTAATGTGGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTCGAGGTTTTTCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAGTATGAGCAAAAAGTGAAAG................................................................................AGTATTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAGAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAGACTAGGATCCT-AAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATTGTCAATGTAACTTACCAATATATGTGTT-AAAATTCAGGTTCTTGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366277" ref_strand="+" ref_description="SGN-E366277 [cLPT-1-F12]">
      <seq>tgacatggtaggtagtgggttacctttttgttgagctacagccatggaagctattttgaagaagaagacaaagtgcgaaggacaaattatcaattttttcagtaagaaaaaaaaaaaaagccgaaagattctgaggatcaatagttagttcaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtctggaaaataagggtcgagttgccagatgcctacccttataagtctccttccattgggtttctcaacaaaatattccaccctaatgtggatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgttttcgaggtttttctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcagtatgagcaaaaagtgaaagagtattgtgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="135601" stop="139736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135901" g_stop="136025" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136026" i_stop="137288" i_length="1263">
            <donor d_prob="0.985" d_score="0.83"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137289" g_stop="137359" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="198" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137360" i_stop="137536" i_length="177">
            <donor d_prob="0.199" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137537" g_stop="137616" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="278" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137617" i_stop="138493" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138494" g_stop="138608" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="393" r_length="115" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="138609" i_stop="138820" i_length="212">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="138821" g_stop="138873" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="446" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="138874" i_stop="139302" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139303" g_stop="139431" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="575" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="139432" i_stop="139511" i_length="80">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.642" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="139512" g_stop="139523" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="587" r_length="12" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E366277" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135901" e_stop="136025"/>
          <exon e_start="137289" e_stop="137359"/>
          <exon e_start="137537" e_stop="137616"/>
          <exon e_start="138494" e_stop="138608"/>
          <exon e_start="138821" e_stop="138873"/>
          <exon e_start="139303" e_stop="139431"/>
          <exon e_start="139512" e_stop="139523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATGGTAGGTAGTGGGTTACCTTTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAATTTCTCAATTTTTTCAG-AAG--AAAAAAAAAAAGCCGAAAGGTAAACGCATAGTAATCAAAGCCACGTAGCTGTTAGTATCATTCTTTTGTATATATACAATGCACGTGCCTTTTTTCAACTCTGTAACTCTGCCTAATGCCCCAACATGTCGACACCTTTCCCTTTTATATATATATAGAGAAGAAATTTTATTTATCTTTTTCTTTCATGTTCAGATCTTGTTGCATAATCCTCCTAGTTAAGTGTAAATTTGATTTTTGACGTGTGTAGATTTGTTTCTTGTTGTGTTTTTTTATGAAGAAATGAAATTGATTTTGATTTTATTGTGGATGGGGTACTTTTTTATTTGATGGGTGTGGTTTTTTTTGGCTAAAGTTTTGATCTTTTTCAATTTGGTTTTCATCTAATCTAATTTAATTTTTGTGCATTGCTAAGACTTAGTGTGTATCTTTGAATGTTGTGATTCTTTTAGTTTTAATTAATTGTTATGTGTAGTGGTTTCTTGGAATGGATTTGTGTGTTTTGAGGATTCAAGTTTGTGACTTTCTTTTTTTTTTTAATAAGCTTGCGTTCTCCTTGACTAATTCCACGGGTAGGTAGTTGTTATTGCTCCCACTAGGCTTGGACAAATGAGAATAAATCACTTAGTGTTTGTAAAGTGGTGGTTAGATTATCTACGGGGTGGAGTGTTGGTCGATCAAGAACTTGCACCTCTTGAAAATGAGCGTAGTGGAGAATGAGGATGTTGAGATGGATACATGAGCATATTAGGAGAGATTAGAATTAAGAAAGAAGCTATTCAGGACTAGGTGGGAGTGGCCTACATGGTGTAAGATGAGGGAGGTGAGATTGAGATAGTTTGGGCGTCTGAAGAGAAGATGCACATATGCCCCAATGATGAGGTGTCTGGTTGACTATTTTGGTATAAGGGGAGGTAGAGGTAGAACCGCAGAAATCTTGGGAAAGGTGAGTAGACATGACATACCACACCTTTAGTTTATCGATGACATGATCATAGATAGGAAGATATGGAGGTCGAGGATTGGGGTAGAAGGTTAGTAGGTAGTCGAGCATTATCTAGTTCCCTTATTTGCTGCAGTTACTGTATTATCCGTCGTTGTTGTAACCATTTATTTCTTATGCTCTTTCATAAACAGACGCGTAATTGCTGATCTCGTTGTTTGGTTTCTGTTTTTACATCTTTTTTACTGAACTTACGAACTTATATGTTGAATCCTGTTTTTACATCTTTTTTACTGAACTTACGAACTCATATGTTGAATCCTTGGCTTCATTCCGCAGATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAAC</genome_strand>
        <mrna_strand>TGACATGGTAGGTAGTGGGTTACC-TTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAAATTATCAATTTTTTCAGTAAGAAAAAAAAAAAAAGCCGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAGGATCAATAGTTAGTTCAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTCTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTATAAGTCTCCTTCCATTGGGTTTCTCAACAAAATATTCCACCCTAATGTGGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTCGAGGTTTTTCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAGTATGAGCAAAAAGTGAAAG................................................................................AGTATTGTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346129" ref_strand="+" ref_description="SGN-E346129 [cTOF-34-M1]">
      <seq>gaaggacaatttctcaattttttcagaagaaaaaaaaaaagccgaaagattctgaggatcaatagttagttgaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtttggaaaataagggtcgagttgccagatgcctacccttacaagtctccttccatcgggtttctcaacaaaatattccaccctaatgttgatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgtttttgaggttttcctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcaatatgagcaaaaagtgaaagagtactgtgaacggtacgcaaagaaggagaatgtcgttggcacaccaaaagatgatagtgatgatgagattagtgaaagagagttcagtgggacaagcgaaagcgatgatgaagttgttggacatgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="135678" stop="139942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135978" g_stop="136025" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136026" i_stop="137288" i_length="1263">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137289" g_stop="137359" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="119" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137360" i_stop="137536" i_length="177">
            <donor d_prob="0.199" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137537" g_stop="137616" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="199" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137617" i_stop="138493" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138494" g_stop="138608" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="314" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="138609" i_stop="138820" i_length="212">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="138821" g_stop="138873" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="367" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="138874" i_stop="139302" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139303" g_stop="139431" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="496" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="139432" i_stop="139511" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="139512" g_stop="139642" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="627" r_length="131" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E346129" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135978" e_stop="136025"/>
          <exon e_start="137289" e_stop="137359"/>
          <exon e_start="137537" e_stop="137616"/>
          <exon e_start="138494" e_stop="138608"/>
          <exon e_start="138821" e_stop="138873"/>
          <exon e_start="139303" e_stop="139431"/>
          <exon e_start="139512" e_stop="139642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGACAATTTCTCAATTTTTTCAGAAGAAAAAAAAAAAGCCGAAAGGTAAACGCATAGTAATCAAAGCCACGTAGCTGTTAGTATCATTCTTTTGTATATATACAATGCACGTGCCTTTTTTCAACTCTGTAACTCTGCCTAATGCCCCAACATGTCGACACCTTTCCCTTTTATATATATATAGAGAAGAAATTTTATTTATCTTTTTCTTTCATGTTCAGATCTTGTTGCATAATCCTCCTAGTTAAGTGTAAATTTGATTTTTGACGTGTGTAGATTTGTTTCTTGTTGTGTTTTTTTATGAAGAAATGAAATTGATTTTGATTTTATTGTGGATGGGGTACTTTTTTATTTGATGGGTGTGGTTTTTTTTGGCTAAAGTTTTGATCTTTTTCAATTTGGTTTTCATCTAATCTAATTTAATTTTTGTGCATTGCTAAGACTTAGTGTGTATCTTTGAATGTTGTGATTCTTTTAGTTTTAATTAATTGTTATGTGTAGTGGTTTCTTGGAATGGATTTGTGTGTTTTGAGGATTCAAGTTTGTGACTTTCTTTTTTTTTTTAATAAGCTTGCGTTCTCCTTGACTAATTCCACGGGTAGGTAGTTGTTATTGCTCCCACTAGGCTTGGACAAATGAGAATAAATCACTTAGTGTTTGTAAAGTGGTGGTTAGATTATCTACGGGGTGGAGTGTTGGTCGATCAAGAACTTGCACCTCTTGAAAATGAGCGTAGTGGAGAATGAGGATGTTGAGATGGATACATGAGCATATTAGGAGAGATTAGAATTAAGAAAGAAGCTATTCAGGACTAGGTGGGAGTGGCCTACATGGTGTAAGATGAGGGAGGTGAGATTGAGATAGTTTGGGCGTCTGAAGAGAAGATGCACATATGCCCCAATGATGAGGTGTCTGGTTGACTATTTTGGTATAAGGGGAGGTAGAGGTAGAACCGCAGAAATCTTGGGAAAGGTGAGTAGACATGACATACCACACCTTTAGTTTATCGATGACATGATCATAGATAGGAAGATATGGAGGTCGAGGATTGGGGTAGAAGGTTAGTAGGTAGTCGAGCATTATCTAGTTCCCTTATTTGCTGCAGTTACTGTATTATCCGTCGTTGTTGTAACCATTTATTTCTTATGCTCTTTCATAAACAGACGCGTAATTGCTGATCTCGTTGTTTGGTTTCTGTTTTTACATCTTTTTTACTGAACTTACGAACTTATATGTTGAATCCTGTTTTTACATCTTTTTTACTGAACTTACGAACTCATATGTTGAATCCTTGGCTTCATTCCGCAGATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGAT</genome_strand>
        <mrna_strand>GAAGGACAATTTCTCAATTTTTTCAGAAGAAAAAAAAAAAGCCGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG................................................................................AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAAGAGAGTTCAGTGGGACAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336257" ref_strand="+" ref_description="SGN-E336257 [cTOE-10-F18]">
      <seq>taattctgaggatcaatagttagttgaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtttggaaaataagggtcgagttgccagatgcctacccttacaagtctccttccatcgggtttctcaacaaaatattccaccctaatgttgatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgtttttgaggttttcctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcaatatgagcaaaaagtgaaagagtactgtgaacggtacgcaaagaaggagaatgtcgttggcacaccaaaagatgatagtgatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="136989" stop="139878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137289" g_stop="137359" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="73" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137360" i_stop="137536" i_length="177">
            <donor d_prob="0.199" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137537" g_stop="137616" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="153" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137617" i_stop="138493" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138494" g_stop="138608" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="268" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138609" i_stop="138820" i_length="212">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138821" g_stop="138873" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="321" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="138874" i_stop="139302" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139303" g_stop="139431" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="450" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139432" i_stop="139511" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139512" g_stop="139578" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="517" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E336257" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137289" e_stop="137359"/>
          <exon e_start="137537" e_stop="137616"/>
          <exon e_start="138494" e_stop="138608"/>
          <exon e_start="138821" e_stop="138873"/>
          <exon e_start="139303" e_stop="139431"/>
          <exon e_start="139512" e_stop="139578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGA</genome_strand>
        <mrna_strand>ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG................................................................................AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715198" ref_strand="+" ref_description="SGN-E715198 [FB13CE04]">
      <seq>gttagttgaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtttggaaaataagggtcgagttgccagatgcctacccttacaagtctccttccatcgggtttctcaacaaaatattccaccctaatgttgatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgtttttgaggttttcctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcaatatgagcaaaaagtgaaagagtactgtgaacggtacgcaaagaaggagaatgtcgttggcacaccaaaagatgatagtgatgatgagattagtgaagaggagttcagtggacagagcgaaagcgatgatgaagttgttggacatgctgatccttgagtgaatagactaggatcctaaaatggagatcatgtttttagttcatttttctccttacatgtaatatccgattcgtcgtcgcatgtaaatctaggtgccaaagatagtttagggacaatatacataacctacagatgtgtgatgaatctcagtctgtgtagaaactctctaccttatggtcaatgtaacttaccaatatatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="137005" stop="140152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137305" g_stop="137359" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="137360" i_stop="137536" i_length="177">
            <donor d_prob="0.199" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137537" g_stop="137616" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="135" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137617" i_stop="138493" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="138494" g_stop="138608" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="250" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="138609" i_stop="138820" i_length="212">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138821" g_stop="138873" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="303" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="138874" i_stop="139302" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139303" g_stop="139431" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="432" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139432" i_stop="139511" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139512" g_stop="139852" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="773" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-E715198" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137305" e_stop="137359"/>
          <exon e_start="137537" e_stop="137616"/>
          <exon e_start="138494" e_stop="138608"/>
          <exon e_start="138821" e_stop="138873"/>
          <exon e_start="139303" e_stop="139431"/>
          <exon e_start="139512" e_stop="139852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAAACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTG</genome_strand>
        <mrna_strand>GTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG................................................................................AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAGAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAGACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>165</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13424" PGL_stop="3992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9797" e_stop="9685"/>
            <exon e_start="8227" e_stop="8161"/>
            <exon e_start="7659" e_stop="7593"/>
            <exon e_start="6734" e_stop="6637"/>
            <exon e_start="6523" e_stop="6344"/>
            <exon e_start="6217" e_stop="6007"/>
            <exon e_start="5892" e_stop="5628"/>
            <exon e_start="5495" e_stop="5441"/>
            <exon e_start="5215" e_stop="5054"/>
            <exon e_start="4476" e_stop="3992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.981"/>
          <exon-intron don_prob="0.959" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.762" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9797" e_stop="9685" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9684" i_stop="8228" i_length="1457"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8227" e_stop="8161" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.703" acc_prob="0.936">
            <gDNA_intron_boundary i_start="8160" i_stop="7660" i_length="501"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7659" e_stop="7593" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.919" acc_prob="0.990">
            <gDNA_intron_boundary i_start="7592" i_stop="6735" i_length="858"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6734" e_stop="6637" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6636" i_stop="6524" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6523" e_stop="6344" e_length="180"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.916">
            <gDNA_intron_boundary i_start="6343" i_stop="6218" i_length="126"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="6217" e_stop="6007" e_length="211"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6006" i_stop="5893" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5892" e_stop="5628" e_length="265"/>
          </exon>
          <intron i_serial="7" don_prob="0.959" acc_prob="0.992">
            <gDNA_intron_boundary i_start="5627" i_stop="5496" i_length="132"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="5495" e_stop="5441" e_length="55"/>
          </exon>
          <intron i_serial="8" don_prob="0.762" acc_prob="0.790">
            <gDNA_intron_boundary i_start="5440" i_stop="5216" i_length="225"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="5215" e_stop="5054" e_length="162"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="5053" i_stop="4477" i_length="577"/>
          </intron>
          <exon e_serial="10" e_score="0.996">
            <gDNA_exon_boundary e_start="4476" e_stop="3992" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9797" stop="9685"/>
              <exon start="8227" stop="8161"/>
              <exon start="7659" stop="7593"/>
              <exon start="6734" stop="6637"/>
              <exon start="6523" stop="6344"/>
              <exon start="6217" stop="6061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9797" stop="9685"/>
              <exon start="8227" stop="8161"/>
              <exon start="7659" stop="7593"/>
              <exon start="6734" stop="6637"/>
              <exon start="6523" stop="6344"/>
              <exon start="6217" stop="6103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9797" stop="9685"/>
              <exon start="8227" stop="8161"/>
              <exon start="7659" stop="7593"/>
              <exon start="6734" stop="6637"/>
              <exon start="6523" stop="6344"/>
              <exon start="6217" stop="6179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9797" stop="9685"/>
              <exon start="8227" stop="8161"/>
              <exon start="7659" stop="7593"/>
              <exon start="6734" stop="6637"/>
              <exon start="6523" stop="6344"/>
              <exon start="6217" stop="6179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9743" stop="9685"/>
              <exon start="8227" stop="8161"/>
              <exon start="7659" stop="7593"/>
              <exon start="6734" stop="6637"/>
              <exon start="6523" stop="6344"/>
              <exon start="6217" stop="6101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6114" stop="6007"/>
              <exon start="5892" stop="5628"/>
              <exon start="5495" stop="5441"/>
              <exon start="5215" stop="5054"/>
              <exon start="4476" stop="4447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6111" stop="6007"/>
              <exon start="5892" stop="5628"/>
              <exon start="5495" stop="5471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6046" stop="6007"/>
              <exon start="5892" stop="5628"/>
              <exon start="5495" stop="5441"/>
              <exon start="5215" stop="5054"/>
              <exon start="4476" stop="4121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5776" stop="5628"/>
              <exon start="5495" stop="5441"/>
              <exon start="5215" stop="5054"/>
              <exon start="4476" stop="4301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5776" stop="5628"/>
              <exon start="5495" stop="5441"/>
              <exon start="5215" stop="5185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5774" stop="5628"/>
              <exon start="5495" stop="5441"/>
              <exon start="5215" stop="5111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4444" stop="3992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACAAGAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAG : AGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTT : AGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACAACCAG : ATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGA : GAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGATTTTGAACCACCGATATGCCCTCTTAAACCTTCTTGGGAAAGGAGGATTTAGTGAGGTCTATAAG : GCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAGCTACATGGACTAAATGCTCAGTGGAGCGAAGAGAAGAAGCAAAGTTATATACGACATGCAATCAGGGAGTACAACATCCACAAGACTTTGGTGCACCATCACATTGTGCGGCTTTGGGACATTTTTGAGATAGATCAGAACACATTTTGCACTGTGTTGGAGTACTGTAGTG : GGAAGGACCTTGATGCAGTTCTCAAAGCAACACCTGTGTTGCCAGAAAGGGAAGCAAGAATCATCATTGTGCAGGTTTTTCAAGGCCTTATTTACTTAAATAAAAAGTCACAGAGGATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTG : GTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGA : GTTGATGTCTGGTCAGCTGGTATTTTGTTGTACCAAATGCTGTTTGGTAAACGCCCCTTTGGGCACGACCAAACACAAGAGAGAATACTAAGGGAGGACACAATTATTAAAGCAAGAAAGGTCGAGTTCCCTACAAGACCAGCTGTCTCTAATGAGGCAAAG : GAGTTTATTCGTCGTTGTTTAACATATAATCAAGCTGAGAGGCCAGATGTTTTGACTATCGCCCAAGACCCTTACTTGACATACACAAAGAAATGATACGAAGATGTTAATCACCACAACTTAGGCAGAGAGGTTCGTGTCTCTCGTCTATGTAAGTGGTTGCTCTCCTAATGTAGAGACGAGGAGTGGTGCTCGGGGAATTTTGTACAGTTGTAAAGCGCATGTAATTTTTTGTCCCTGTACCTTCATCTGGTCCATTACCATGTTTTCCATATTTTGGTTTTCTCATCTCGGAAGGTCTATTATGCCATGCTTATTTCATGTTTTGGAATTCGATGTGTGCATCGATGAAATTTCATGGCGATTTAAGAAATCAATTGTGTAGATTCTACCTACTAGTATGTTGGTAGAGGTTATACATACTTTGCTTGAGGAAAAAAAGACATTCAAGTGAAGTGGTTGATGAAAATATTTCATCATCTAAT</gDNA_template>
            <first_frame> R  T  K  I  M  S  E  L  L  I  S  V  S  K  A  E  R  Q  E  A  R  M  K  V  R  Q  E  S  L  R  L  G  N  V  G  V  I  R :   A  G  T  I  I  S  E  A  W  E  D  G  Q  A  L  K  D  L  N  A  Q  L  :  R  N  L  L  E  T  K  E  A  I  E  R  Q  R  K  L  L  K  K  R  Q  P   : D  K  S  D  G  G  D  V  E  G  G  L  Q  E  E  D  S  F  I  Q  D  E  I  Y  K  S  R  L  T  S  I  K  R  :  E  E  D  M  I  M  R  E  R  D  R  Y  E  L  E  K  G  R  L  I  R  E  M  K  R  I  R  D  E  D  G  S  R  F  N  N  F  Q  I  L  N  H  R  Y  A  L  L  N  L  L  G  K  G  G  F  S  E  V  Y  K  :  A  F  D  L  V  D  H  R  Y  V  A  C  K  L  H  G  L  N  A  Q  W  S  E  E  K  K  Q  S  Y  I  R  H  A  I  R  E  Y  N  I  H  K  T  L  V  H  H  H  I  V  R  L  W  D  I  F  E  I  D  Q  N  T  F  C  T  V  L  E  Y  C  S   : G  K  D  L  D  A  V  L  K  A  T  P  V  L  P  E  R  E  A  R  I  I  I  V  Q  V  F  Q  G  L  I  Y  L  N  K  K  S  Q  R  I  I  H  Y  D  L  K  P  G  N  V  L  F  D  E  L  G  V  A  K  V  T  D  F  G  L  S  K  I  V  E  D  D  V  G  S  Q  G  M  E  L  T  S  Q  G  A  G  T  Y  W :   Y  L  P  P  E  C  F  E  L  S  K  T  P  L  I  S  S  R  :  V  D  V  W  S  A  G  I  L  L  Y  Q  M  L  F  G  K  R  P  F  G  H  D  Q  T  Q  E  R  I  L  R  E  D  T  I  I  K  A  R  K  V  E  F  P  T  R  P  A  V  S  N  E  A  K  :  E  F  I  R  R  C  L  T  Y  N  Q  A  E  R  P  D  V  L  T  I  A  Q  D  P  Y  L  T  Y  T  K  K  *  Y  E  D  V  N  H  H  N  L  G  R  E  V  R  V  S  R  L  C  K  W  L  L  S  *  C  R  D  E  E  W  C  S  G  N  F  V  Q  L  *  S  A  C  N  F  L  S  L  Y  L  H  L  V  H  Y  H  V  F  H  I  L  V  F  S  S  R  K  V  Y  Y  A  M  L  I  S  C  F  G  I  R  C  V  H  R  *  N  F  M  A  I  *  E  I  N  C  V  D  S  T  Y  *  Y  V  G  R  G  Y  T  Y  F  A  *  G  K  K  D  I  Q  V  K  W  L  M  K  I  F  H  H  L   </first_frame>
            <second_frame>  E  R  K  *  C  P  S  C  *  Y  L  F  Q  K  L  R  D  K  R  L  G  *  K  C  A  R  N  H  *  D  W  A  M  W  E  *  S   : E  L  E  P  L  Y  L  R  P  G  K  M  G  K  H  *  R  T  *  M  L  N  L :   E  T  Y  *  K  Q  K  K  L  L  N  G  S  V  N  C  *  R  N  D  N  Q  :  I  K  V  M  E  E  M  W  R  E  V  C  R  K  K  I  L  S  F  R  M  K  S  T  N  L  V  *  L  A  S  N  E :   R  R  I  *  *  C  V  R  E  I  G  M  N  *  R  K  E  G  S  F  V  K  *  N  A  Y  V  M  K  T  V  L  V  L  T  I  F  R  F  *  T  T  D  M  P  S  *  T  F  L  G  K  E  D  L  V  R  S  I  R :   L  L  T  W  *  I  I  D  M  L  H  V  S  Y  M  D  *  M  L  S  G  A  K  R  R  S  K  V  I  Y  D  M  Q  S  G  S  T  T  S  T  R  L  W  C  T  I  T  L  C  G  F  G  T  F  L  R  *  I  R  T  H  F  A  L  C  W  S  T  V  V  :  G  R  T  L  M  Q  F  S  K  Q  H  L  C  C  Q  K  G  K  Q  E  S  S  L  C  R  F  F  K  A  L  F  T  *  I  K  S  H  R  G  S  S  I  M  I  *  S  Q  G  M  F  Y  L  M  S  L  V  L  L  K  L  P  I  L  V  *  A  R  *  W  K  M  M  L  D  P  R  V  W  N  S  H  P  R  E  R  E  R  T   : G  I  Y  L  P  N  A  L  S  *  A  R  H  L  L  Y  P  R  E :   L  M  S  G  Q  L  V  F  C  C  T  K  C  C  L  V  N  A  P  L  G  T  T  K  H  K  R  E  Y  *  G  R  T  Q  L  L  K  Q  E  R  S  S  S  L  Q  D  Q  L  S  L  M  R  Q  R :   S  L  F  V  V  V  *  H  I  I  K  L  R  G  Q  M  F  *  L  S  P  K  T  L  T  *  H  T  Q  R  N  D  T  K  M  L  I  T  T  T  *  A  E  R  F  V  S  L  V  Y  V  S  G  C  S  P  N  V  E  T  R  S  G  A  R  G  I  L  Y  S  C  K  A  H  V  I  F  C  P  C  T  F  I  W  S  I  T  M  F  S  I  F  W  F  S  H  L  G  R  S  I  M  P  C  L  F  H  V  L  E  F  D  V  C  I  D  E  I  S  W  R  F  K  K  S  I  V  *  I  L  P  T  S  M  L  V  E  V  I  H  T  L  L  E  E  K  K  T  F  K  *  S  G  *  *  K  Y  F  I  I  *  </second_frame>
            <third_frame>   N  E  N  N  V  R  V  A  N  I  C  F  K  S  *  E  T  R  G  S  D  E  S  A  P  G  I  I  E  T  G  Q  C  G  S  N  Q  :  S  W  N  H  Y  I  *  G  L  G  R  W  A  S  T  K  G  P  E  C  S  T   : *  K  L  I  R  N  K  R  S  Y  *  T  A  A  *  I  V  E  E  T  T  T  R :   *  K  *  W  R  R  C  G  G  R  F  A  G  R  R  F  F  H  S  G  *  N  L  Q  I  S  F  N  *  H  Q  T   : R  G  G  Y  D  N  A  *  E  R  S  V  *  T  R  E  R  K  A  H  S  *  N  E  T  H  T  *  *  R  R  F  S  F  *  Q  F  S  D  F  E  P  P  I  C  P  L  K  P  S  W  E  R  R  I  *  *  G  L  *   : G  F  *  L  G  R  S  *  I  C  C  M  *  A  T  W  T  K  C  S  V  E  R  R  E  E  A  K  L  Y  T  T  C  N  Q  G  V  Q  H  P  Q  D  F  G  A  P  S  H  C  A  A  L  G  H  F  *  D  R  S  E  H  I  L  H  C  V  G  V  L  *  W :   E  G  P  *  C  S  S  Q  S  N  T  C  V  A  R  K  G  S  K  N  H  H  C  A  G  F  S  R  P  Y  L  L  K  *  K  V  T  E  D  H  P  L  *  S  E  A  R  E  C  S  I  *  *  A  W  C  C  *  S  Y  R  F  W  S  K  Q  D  S  G  R  *  C  W  I  P  G  Y  G  T  H  I  P  G  S  G  N  V  L  :  V  S  T  S  R  M  L  *  A  K  Q  D  T  S  Y  I  L  E   : S  *  C  L  V  S  W  Y  F  V  V  P  N  A  V  W  *  T  P  L  W  A  R  P  N  T  R  E  N  T  K  G  G  H  N  Y  *  S  K  K  G  R  V  P  Y  K  T  S  C  L  *  *  G  K   : G  V  Y  S  S  L  F  N  I  *  S  S  *  E  A  R  C  F  D  Y  R  P  R  P  L  L  D  I  H  K  E  M  I  R  R  C  *  S  P  Q  L  R  Q  R  G  S  C  L  S  S  M  *  V  V  A  L  L  M  *  R  R  G  V  V  L  G  E  F  C  T  V  V  K  R  M  *  F  F  V  P  V  P  S  S  G  P  L  P  C  F  P  Y  F  G  F  L  I  S  E  G  L  L  C  H  A  Y  F  M  F  W  N  S  M  C  A  S  M  K  F  H  G  D  L  R  N  Q  L  C  R  F  Y  L  L  V  C  W  *  R  L  Y  I  L  C  L  R  K  K  R  H  S  S  E  V  V  D  E  N  I  S  S  S  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9797" stop="9685"/>
                    <exon start="8227" stop="8161"/>
                    <exon start="7659" stop="7593"/>
                    <exon start="6734" stop="6637"/>
                    <exon start="6523" stop="6344"/>
                    <exon start="6217" stop="6007"/>
                    <exon start="5892" stop="5628"/>
                    <exon start="5495" stop="5441"/>
                    <exon start="5215" stop="5054"/>
                    <exon start="4476" stop="4381"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1311</number_coding_nucleotides>
                  <number_encoded_amino_acids>437</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTKIMSELLISVSKAERQEARMKVRQESLRLGNVGVIRAGTIISEAWEDGQALKDLNAQLRNLLETKEAIERQRKLLKKRQPDKSDGGDVEGGLQEEDSFIQDEIYKSRLTSIKREEDMIMRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVDHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHHHIVRLWDIFEIDQNTFCTVLEYCSGKDLDAVLKATPVLPEREARIIIVQVFQGLIYLNKKSQRIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSRVDVWSAGILLYQMLFGKRPFGHDQTQERILREDTIIKARKVEFPTRPAVSNEAKEFIRRCLTYNQAERPDVLTIAQDPYLTYTKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4352" stop="4092"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AERFVSLVYVSGCSPNVETRSGARGILYSCKAHVIFCPCTFIWSITMFSIFWFSHLGRSIMPCLFHVLEFDVCIDEISWRFKKSIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13424" e_stop="13255"/>
            <exon e_start="12498" e_stop="12442"/>
            <exon e_start="12244" e_stop="12137"/>
            <exon e_start="10634" e_stop="10590"/>
            <exon e_start="9797" e_stop="9685"/>
            <exon e_start="8227" e_stop="7977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13424" e_stop="13255" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13254" i_stop="12499" i_length="756"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12498" e_stop="12442" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="12441" i_stop="12245" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12244" e_stop="12137" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.959" acc_prob="0.909">
            <gDNA_intron_boundary i_start="12136" i_stop="10635" i_length="1502"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10634" e_stop="10590" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10589" i_stop="9798" i_length="792"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9797" e_stop="9685" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9684" i_stop="8228" i_length="1457"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8227" e_stop="7977" e_length="251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13424" stop="13255"/>
              <exon start="12498" stop="12442"/>
              <exon start="12244" stop="12137"/>
              <exon start="10634" stop="10590"/>
              <exon start="9797" stop="9685"/>
              <exon start="8227" stop="7977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316556" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAGAATACAGAAACAAGCAAAGTGGCTTCAGATGGGAATAGACGAAAACAAAGCCGTAGTAGGGGACAAACTAATTCTGGTAGAGGGCGTGGTTCCCGAGTTGGTGATCAGACCAGGTTACAAGCAGTTTCTGCGTCAAATGATCTGTTCGAGAACTCTTACAAGAAG : TTGCAGGATAGTTTGCCTAAAGAGCAACTTGGGCATAATGGACAGACTGCATCAGAA : GAGGAGATCACTACTTTACGGGCAAAAATTGTGGCTTTGGAGGAAGAGCTTAGGAAATCCCGTCAAGAGGCCACAGATTATCAGTATCGGTGTCAACAGCTGGAAAAG : GAGCTGAAGGATCTTAAAGATTACGAGCAGCAGACAAAGCCAAAG : AGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACAAGAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAG : AGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTTGTATGTTCCGTATTTTGGTGGTCTGGCAAGGGACTGCTTGTTTTGCAGTTTCATTTTATGGATATATTAATATATCCATGCTGACAACTAACAGTCACTGCCTGTCCATTTAGCTTTTAAAGTACAATAGAACTTCAGCTTATGTCCTAACAACCATGCCCACAACAAAGGAGAGATTTGAACT</gDNA_template>
            <first_frame> *  R  I  Q  K  Q  A  K  W  L  Q  M  G  I  D  E  N  K  A  V  V  G  D  K  L  I  L  V  E  G  V  V  P  E  L  V  I  R  P  G  Y  K  Q  F  L  R  Q  M  I  C  S  R  T  L  T  R  S :   C  R  I  V  C  L  K  S  N  L  G  I  M  D  R  L  H  Q  K :   R  R  S  L  L  Y  G  Q  K  L  W  L  W  R  K  S  L  G  N  P  V  K  R  P  Q  I  I  S  I  G  V  N  S  W  K  R :   S  *  R  I  L  K  I  T  S  S  R  Q  S  Q  R :   E  R  K  *  C  P  S  C  *  Y  L  F  Q  K  L  R  D  K  R  L  G  *  K  C  A  R  N  H  *  D  W  A  M  W  E  *  S   : E  L  E  P  L  Y  L  R  P  G  K  M  G  K  H  *  R  T  *  M  L  N  L  Y  V  P  Y  F  G  G  L  A  R  D  C  L  F  C  S  F  I  L  W  I  Y  *  Y  I  H  A  D  N  *  Q  S  L  P  V  H  L  A  F  K  V  Q  *  N  F  S  L  C  P  N  N  H  A  H  N  K  G  E  I  *  T </first_frame>
            <second_frame>  R  E  Y  R  N  K  Q  S  G  F  R  W  E  *  T  K  T  K  P  *  *  G  T  N  *  F  W  *  R  A  W  F  P  S  W  *  S  D  Q  V  T  S  S  F  C  V  K  *  S  V  R  E  L  L  Q  E   : V  A  G  *  F  A  *  R  A  T  W  A  *  W  T  D  C  I  R   : R  G  D  H  Y  F  T  G  K  N  C  G  F  G  G  R  A  *  E  I  P  S  R  G  H  R  L  S  V  S  V  S  T  A  G  K   : G  A  E  G  S  *  R  L  R  A  A  D  K  A  K   : E  N  E  N  N  V  R  V  A  N  I  C  F  K  S  *  E  T  R  G  S  D  E  S  A  P  G  I  I  E  T  G  Q  C  G  S  N  Q  :  S  W  N  H  Y  I  *  G  L  G  R  W  A  S  T  K  G  P  E  C  S  T  C  M  F  R  I  L  V  V  W  Q  G  T  A  C  F  A  V  S  F  Y  G  Y  I  N  I  S  M  L  T  T  N  S  H  C  L  S  I  *  L  L  K  Y  N  R  T  S  A  Y  V  L  T  T  M  P  T  T  K  E  R  F  E   </second_frame>
            <third_frame>   E  N  T  E  T  S  K  V  A  S  D  G  N  R  R  K  Q  S  R  S  R  G  Q  T  N  S  G  R  G  R  G  S  R  V  G  D  Q  T  R  L  Q  A  V  S  A  S  N  D  L  F  E  N  S  Y  K  K  :  L  Q  D  S  L  P  K  E  Q  L  G  H  N  G  Q  T  A  S  E  :  E  E  I  T  T  L  R  A  K  I  V  A  L  E  E  E  L  R  K  S  R  Q  E  A  T  D  Y  Q  Y  R  C  Q  Q  L  E  K  :  E  L  K  D  L  K  D  Y  E  Q  Q  T  K  P  K  :  R  T  K  I  M  S  E  L  L  I  S  V  S  K  A  E  R  Q  E  A  R  M  K  V  R  Q  E  S  L  R  L  G  N  V  G  V  I  R :   A  G  T  I  I  S  E  A  W  E  D  G  Q  A  L  K  D  L  N  A  Q  L  V  C  S  V  F  W  W  S  G  K  G  L  L  V  L  Q  F  H  F  M  D  I  L  I  Y  P  C  *  Q  L  T  V  T  A  C  P  F  S  F  *  S  T  I  E  L  Q  L  M  S  *  Q  P  C  P  Q  Q  R  R  D  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13422" stop="13255"/>
                    <exon start="12498" stop="12442"/>
                    <exon start="12244" stop="12137"/>
                    <exon start="10634" stop="10590"/>
                    <exon start="9797" stop="9685"/>
                    <exon start="8227" stop="8077"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENTETSKVASDGNRRKQSRSRGQTNSGRGRGSRVGDQTRLQAVSASNDLFENSYKKLQDSLPKEQLGHNGQTASEEEITTLRAKIVALEEELRKSRQEATDYQYRCQQLEKELKDLKDYEQQTKPKRTKIMSELLISVSKAERQEARMKVRQESLRLGNVGVIRAGTIISEAWEDGQALKDLNAQLVCSVFWWSGKGLLVLQFHFMDILIYPC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16507" PGL_stop="16017"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16507" e_stop="16017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="16507" e_stop="16017" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16507" stop="16017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16479" stop="16079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTTTTTAGTACTTCCCTCTCTTTGATTCTTTCCATTTTCCTCAAGAAAAGGGAATTAAATTAACCCTAAATCTCCTCTGTCCCATTTCCTTACAAGAAGTTGTCAAAAGGGTTGAATTGATTTCTCTGATGCTGCCGTTTTCTTGATTGTACAACTCTTTTTGACTAAAAGGGTGTCTTAGAATCGCTTCAAATCATCAAAAAGACACCAAAGTTCACTTTTTTAGGTTGTTTGTTGTTCTGGGTCAGTTGTGAATGATCTGATACCTTTGTTGTTTTTTTTAAGAATGGCTGATGATATGGTCATTCATTTTGCATCCAATTCTTCTAACCAATCTGACCAGTCTTTGCCTACAAAAATTGCGAAACTTGAGGCAAGAATGGTGGGGAAAGCTTCATCTGTTACATCTCAAGCTAATTCCTGGTCTTCCCCAGCTATGTTTGAGAATGTTGCTGAGCCTGCCACCGTCTCTAGTGATTCAGATGATG</gDNA_template>
            <first_frame> S  F  F  S  T  S  L  S  L  I  L  S  I  F  L  K  K  R  E  L  N  *  P  *  I  S  S  V  P  F  P  Y  K  K  L  S  K  G  L  N  *  F  L  *  C  C  R  F  L  D  C  T  T  L  F  D  *  K  G  V  L  E  S  L  Q  I  I  K  K  T  P  K  F  T  F  L  G  C  L  L  F  W  V  S  C  E  *  S  D  T  F  V  V  F  F  K  N  G  *  *  Y  G  H  S  F  C  I  Q  F  F  *  P  I  *  P  V  F  A  Y  K  N  C  E  T  *  G  K  N  G  G  E  S  F  I  C  Y  I  S  S  *  F  L  V  F  P  S  Y  V  *  E  C  C  *  A  C  H  R  L  *  *  F  R  *   </first_frame>
            <second_frame>  L  F  L  V  L  P  S  L  *  F  F  P  F  S  S  R  K  G  N  *  I  N  P  K  S  P  L  S  H  F  L  T  R  S  C  Q  K  G  *  I  D  F  S  D  A  A  V  F  L  I  V  Q  L  F  L  T  K  R  V  S  *  N  R  F  K  S  S  K  R  H  Q  S  S  L  F  *  V  V  C  C  S  G  S  V  V  N  D  L  I  P  L  L  F  F  L  R  M  A  D  D  M  V  I  H  F  A  S  N  S  S  N  Q  S  D  Q  S  L  P  T  K  I  A  K  L  E  A  R  M  V  G  K  A  S  S  V  T  S  Q  A  N  S  W  S  S  P  A  M  F  E  N  V  A  E  P  A  T  V  S  S  D  S  D  D  </second_frame>
            <third_frame>   F  F  *  Y  F  P  L  F  D  S  F  H  F  P  Q  E  K  G  I  K  L  T  L  N  L  L  C  P  I  S  L  Q  E  V  V  K  R  V  E  L  I  S  L  M  L  P  F  S  *  L  Y  N  S  F  *  L  K  G  C  L  R  I  A  S  N  H  Q  K  D  T  K  V  H  F  F  R  L  F  V  V  L  G  Q  L  *  M  I  *  Y  L  C  C  F  F  *  E  W  L  M  I  W  S  F  I  L  H  P  I  L  L  T  N  L  T  S  L  C  L  Q  K  L  R  N  L  R  Q  E  W  W  G  K  L  H  L  L  H  L  K  L  I  P  G  L  P  Q  L  C  L  R  M  L  L  S  L  P  P  S  L  V  I  Q  M  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16278" stop="16018"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVCCSGSVVNDLIPLLFFLRMADDMVIHFASNSSNQSDQSLPTKIAKLEARMVGKASSVTSQANSWSSPAMFENVAEPATVSSDSDD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16220" stop="16017"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EWLMIWSFILHPILLTNLTSLCLQKLRNLRQEWWGKLHLLHLKLIPGLPQLCLRMLLSLPPSLVIQMM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="22857" PGL_stop="18443"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22857" e_stop="22503"/>
            <exon e_start="22367" e_stop="22314"/>
            <exon e_start="20954" e_stop="20838"/>
            <exon e_start="20732" e_stop="20574"/>
            <exon e_start="19670" e_stop="19509"/>
            <exon e_start="19420" e_stop="19304"/>
            <exon e_start="19187" e_stop="19080"/>
            <exon e_start="18919" e_stop="18443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.996" e_score="0.966"/>
          <exon-intron don_prob="0.565" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.810" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.715" e_score="1.000"/>
          <exon-intron don_prob="0.560" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="22857" e_stop="22503" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.996">
            <gDNA_intron_boundary i_start="22502" i_stop="22368" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22367" e_stop="22314" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.565" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22313" i_stop="20955" i_length="1359"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20954" e_stop="20838" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.810" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20837" i_stop="20733" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="20732" e_stop="20574" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.589" acc_prob="0.812">
            <gDNA_intron_boundary i_start="20573" i_stop="19671" i_length="903"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19670" e_stop="19509" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.715">
            <gDNA_intron_boundary i_start="19508" i_stop="19421" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19420" e_stop="19304" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.560" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19303" i_stop="19188" i_length="116"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19187" e_stop="19080" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.616" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19079" i_stop="18920" i_length="160"/>
          </intron>
          <exon e_serial="8" e_score="0.977">
            <gDNA_exon_boundary e_start="18919" e_stop="18443" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22857" stop="22537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22857" stop="22537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22551" stop="22503"/>
              <exon start="22367" stop="22314"/>
              <exon start="20954" stop="20838"/>
              <exon start="20732" stop="20574"/>
              <exon start="19670" stop="19509"/>
              <exon start="19420" stop="19304"/>
              <exon start="19187" stop="19133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22551" stop="22503"/>
              <exon start="22367" stop="22314"/>
              <exon start="20954" stop="20838"/>
              <exon start="20732" stop="20574"/>
              <exon start="19670" stop="19514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19643" stop="19509"/>
              <exon start="19420" stop="19304"/>
              <exon start="19187" stop="19080"/>
              <exon start="18919" stop="18443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGATTAGAATTTCACTGTAAAACAATGGGTAAGCGAGAGAAGAAGGAGAAGAAATCAGCAAAATCAGAAGTTATGGAGGTAGAGGAATTATCAGAGGTAAAAATGAAGAAATCTAAGAGAGTGCGGAGTAAGAAAAGAAAAGAAGAAGATGAAGATGATGATGTTGAAGCTAATGAAGATCTCAGCTTGAAAATTGTTGAGAAAGCTTTGCTTCGTGGGTGCTCAACTGAAAATGGCGAAGTTGTGGTTGTTACAGATTTGAAGAAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAAAGAAGAAGAAGAAGAAGGAAAAGAATGTTGAGATTCCTGAAGACCCC : GTATCAAGTGGAATAGATAAGGGGTTTCAGAGCTTCTGTAGTGATATGTCTATG : GTGGATGGAATGAAAGAAGGTGAAAATGTGGTTAGTATAGATATGAATGTTGTTGACAATGCAGCTCAACAGAATCCCGTTGATATGTCTAATGGTGTCGTCCTACGAAGGCTTCTT : CGGGGGCCCAGATACTTTGATCCTCCAGATAGCAGTTGGGGGACGTGTTATAATTGTGGTGAAGAGGGTCATACGACAGTCAGTTGTACTTCAGCCAAACGCAAAAAACCATGTTTTGTTTGTGGGAGTTTTGATCATAATTCTAAACAGTGTACAAAG : GGCAAGGAGTGTTTCATTTGCAAGAAGGGCGGTCATCGTGCTAAGGATTGCCCTGAAAAAAGCCAAGGAGGATCTGAGAGTTCAAGAATGTGTTTAAAATGTGGGGATTCTGGGCATGATATGCTGTCATGCTGGAATAACTATTCTGCTGATGATCTAAAG : GAAATACAATGTTACATTTGTAAGAGTTTTGGTCATCTTTGCTGTGCAAGCTACCCCAATGGTGGTCCAAGTGAAATATCCTGTTACAGATGTGGTCTACTAGGCCATACCGGTTTG : GCATGCACAGGATCTCGTGGGGAAACTAGTGGTACATGGCATCTTAGTTCTTGTTTTAGGTGTGGCGAAGAAGGGCATTTTGCACGAGAATGCACTAATTCCAATATA : GTCAATAAGTGGAATCGGGAATCATCAACCCCCAAGAAGAAAGTGTTCAAGGAAAGAAAGGAAAATTATGAGTTCCAATCTGCTCCTCATGAATATGGCAAGGCAAGAAAAAAGAACACACAATACGGAGAAGGATATGCATCAGGGTACAATACAAAACATAGAGCTGGTTGGATCACCGATGATTCTGAAGACTTCCCTCAATCCAATGGTTGGAGATCTCCTTCAACTCCTGGACATAAGAGAGCCAGGACATCCAACTTCGGTTCTGGTGATCATTCTTCTGTTTCTTATTCATCTAGAAAGTCCAACAGGCTCGACTTTAACGATTCAACTCCTTATGGATCAGTCAAACATCATAATCACCATAGGTTTTCAGCTTCGCGATTTGGCAACAGTAGTCATGATGGGAGGAGAAATTATGAATGGTAACAGAAACCCTTTATCATCTCTTTTTTTTGGATGACCAAATCTCCA</gDNA_template>
            <first_frame> S  I  R  I  S  L  *  N  N  G  *  A  R  E  E  G  E  E  I  S  K  I  R  S  Y  G  G  R  G  I  I  R  G  K  N  E  E  I  *  E  S  A  E  *  E  K  K  R  R  R  *  R  *  *  C  *  S  *  *  R  S  Q  L  E  N  C  *  E  S  F  A  S  W  V  L  N  *  K  W  R  S  C  G  C  Y  R  F  E  E  E  R  E  R  E  R  E  R  E  R  E  R  E  K  E  E  E  E  E  G  K  E  C  *  D  S  *  R  P   : R  I  K  W  N  R  *  G  V  S  E  L  L  *  *  Y  V  Y   : G  G  W  N  E  R  R  *  K  C  G  *  Y  R  Y  E  C  C  *  Q  C  S  S  T  E  S  R  *  Y  V  *  W  C  R  P  T  K  A  S   : S  G  A  Q  I  L  *  S  S  R  *  Q  L  G  D  V  L  *  L  W  *  R  G  S  Y  D  S  Q  L  Y  F  S  Q  T  Q  K  T  M  F  C  L  W  E  F  *  S  *  F  *  T  V  Y  K   : G  Q  G  V  F  H  L  Q  E  G  R  S  S  C  *  G  L  P  *  K  K  P  R  R  I  *  E  F  K  N  V  F  K  M  W  G  F  W  A  *  Y  A  V  M  L  E  *  L  F  C  *  *  S  K   : G  N  T  M  L  H  L  *  E  F  W  S  S  L  L  C  K  L  P  Q  W  W  S  K  *  N  I  L  L  Q  M  W  S  T  R  P  Y  R  F   : G  M  H  R  I  S  W  G  N  *  W  Y  M  A  S  *  F  L  F  *  V  W  R  R  R  A  F  C  T  R  M  H  *  F  Q  Y   : S  Q  *  V  E  S  G  I  I  N  P  Q  E  E  S  V  Q  G  K  K  G  K  L  *  V  P  I  C  S  S  *  I  W  Q  G  K  K  K  E  H  T  I  R  R  R  I  C  I  R  V  Q  Y  K  T  *  S  W  L  D  H  R  *  F  *  R  L  P  S  I  Q  W  L  E  I  S  F  N  S  W  T  *  E  S  Q  D  I  Q  L  R  F  W  *  S  F  F  C  F  L  F  I  *  K  V  Q  Q  A  R  L  *  R  F  N  S  L  W  I  S  Q  T  S  *  S  P  *  V  F  S  F  A  I  W  Q  Q  *  S  *  W  E  E  K  L  *  M  V  T  E  T  L  Y  H  L  F  F  L  D  D  Q  I  S  </first_frame>
            <second_frame>  R  L  E  F  H  C  K  T  M  G  K  R  E  K  K  E  K  K  S  A  K  S  E  V  M  E  V  E  E  L  S  E  V  K  M  K  K  S  K  R  V  R  S  K  K  R  K  E  E  D  E  D  D  D  V  E  A  N  E  D  L  S  L  K  I  V  E  K  A  L  L  R  G  C  S  T  E  N  G  E  V  V  V  V  T  D  L  K  K  K  E  K  E  K  E  K  E  K  E  K  E  K  K  K  K  K  K  K  E  K  N  V  E  I  P  E  D  P  :  V  S  S  G  I  D  K  G  F  Q  S  F  C  S  D  M  S  M  :  V  D  G  M  K  E  G  E  N  V  V  S  I  D  M  N  V  V  D  N  A  A  Q  Q  N  P  V  D  M  S  N  G  V  V  L  R  R  L  L  :  R  G  P  R  Y  F  D  P  P  D  S  S  W  G  T  C  Y  N  C  G  E  E  G  H  T  T  V  S  C  T  S  A  K  R  K  K  P  C  F  V  C  G  S  F  D  H  N  S  K  Q  C  T  K  :  G  K  E  C  F  I  C  K  K  G  G  H  R  A  K  D  C  P  E  K  S  Q  G  G  S  E  S  S  R  M  C  L  K  C  G  D  S  G  H  D  M  L  S  C  W  N  N  Y  S  A  D  D  L  K  :  E  I  Q  C  Y  I  C  K  S  F  G  H  L  C  C  A  S  Y  P  N  G  G  P  S  E  I  S  C  Y  R  C  G  L  L  G  H  T  G  L  :  A  C  T  G  S  R  G  E  T  S  G  T  W  H  L  S  S  C  F  R  C  G  E  E  G  H  F  A  R  E  C  T  N  S  N  I  :  V  N  K  W  N  R  E  S  S  T  P  K  K  K  V  F  K  E  R  K  E  N  Y  E  F  Q  S  A  P  H  E  Y  G  K  A  R  K  K  N  T  Q  Y  G  E  G  Y  A  S  G  Y  N  T  K  H  R  A  G  W  I  T  D  D  S  E  D  F  P  Q  S  N  G  W  R  S  P  S  T  P  G  H  K  R  A  R  T  S  N  F  G  S  G  D  H  S  S  V  S  Y  S  S  R  K  S  N  R  L  D  F  N  D  S  T  P  Y  G  S  V  K  H  H  N  H  H  R  F  S  A  S  R  F  G  N  S  S  H  D  G  R  R  N  Y  E  W  *  Q  K  P  F  I  I  S  F  F  W  M  T  K  S  P </second_frame>
            <third_frame>   D  *  N  F  T  V  K  Q  W  V  S  E  R  R  R  R  R  N  Q  Q  N  Q  K  L  W  R  *  R  N  Y  Q  R  *  K  *  R  N  L  R  E  C  G  V  R  K  E  K  K  K  M  K  M  M  M  L  K  L  M  K  I  S  A  *  K  L  L  R  K  L  C  F  V  G  A  Q  L  K  M  A  K  L  W  L  L  Q  I  *  R  R  K  R  K  R  K  R  K  R  K  R  K  R  K  R  R  R  R  R  R  K  R  M  L  R  F  L  K  T  P :   Y  Q  V  E  *  I  R  G  F  R  A  S  V  V  I  C  L  W :   W  M  E  *  K  K  V  K  M  W  L  V  *  I  *  M  L  L  T  M  Q  L  N  R  I  P  L  I  C  L  M  V  S  S  Y  E  G  F  F :   G  G  P  D  T  L  I  L  Q  I  A  V  G  G  R  V  I  I  V  V  K  R  V  I  R  Q  S  V  V  L  Q  P  N  A  K  N  H  V  L  F  V  G  V  L  I  I  I  L  N  S  V  Q  R :   A  R  S  V  S  F  A  R  R  A  V  I  V  L  R  I  A  L  K  K  A  K  E  D  L  R  V  Q  E  C  V  *  N  V  G  I  L  G  M  I  C  C  H  A  G  I  T  I  L  L  M  I  *  R :   K  Y  N  V  T  F  V  R  V  L  V  I  F  A  V  Q  A  T  P  M  V  V  Q  V  K  Y  P  V  T  D  V  V  Y  *  A  I  P  V  W :   H  A  Q  D  L  V  G  K  L  V  V  H  G  I  L  V  L  V  L  G  V  A  K  K  G  I  L  H  E  N  A  L  I  P  I  * :   S  I  S  G  I  G  N  H  Q  P  P  R  R  K  C  S  R  K  E  R  K  I  M  S  S  N  L  L  L  M  N  M  A  R  Q  E  K  R  T  H  N  T  E  K  D  M  H  Q  G  T  I  Q  N  I  E  L  V  G  S  P  M  I  L  K  T  S  L  N  P  M  V  G  D  L  L  Q  L  L  D  I  R  E  P  G  H  P  T  S  V  L  V  I  I  L  L  F  L  I  H  L  E  S  P  T  G  S  T  L  T  I  Q  L  L  M  D  Q  S  N  I  I  I  T  I  G  F  Q  L  R  D  L  A  T  V  V  M  M  G  G  E  I  M  N  G  N  R  N  P  L  S  S  L  F  F  G  *  P  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22856" stop="22503"/>
                    <exon start="22367" stop="22314"/>
                    <exon start="20954" stop="20838"/>
                    <exon start="20732" stop="20574"/>
                    <exon start="19670" stop="19509"/>
                    <exon start="19420" stop="19304"/>
                    <exon start="19187" stop="19080"/>
                    <exon start="18919" stop="18488"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLEFHCKTMGKREKKEKKSAKSEVMEVEELSEVKMKKSKRVRSKKRKEEDEDDDVEANEDLSLKIVEKALLRGCSTENGEVVVVTDLKKKEKEKEKEKEKEKKKKKKKEKNVEIPEDPVSSGIDKGFQSFCSDMSMVDGMKEGENVVSIDMNVVDNAAQQNPVDMSNGVVLRRLLRGPRYFDPPDSSWGTCYNCGEEGHTTVSCTSAKRKKPCFVCGSFDHNSKQCTKGKECFICKKGGHRAKDCPEKSQGGSESSRMCLKCGDSGHDMLSCWNNYSADDLKEIQCYICKSFGHLCCASYPNGGPSEISCYRCGLLGHTGLACTGSRGETSGTWHLSSCFRCGEEGHFARECTNSNIVNKWNRESSTPKKKVFKERKENYEFQSAPHEYGKARKKNTQYGEGYASGYNTKHRAGWITDDSEDFPQSNGWRSPSTPGHKRARTSNFGSGDHSSVSYSSRKSNRLDFNDSTPYGSVKHHNHHRFSASRFGNSSHDGRRNYEW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25198" PGL_stop="29284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25198" e_stop="25285"/>
            <exon e_start="25622" e_stop="25685"/>
            <exon e_start="26965" e_stop="27109"/>
            <exon e_start="27201" e_stop="27358"/>
            <exon e_start="29164" e_stop="29284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.178" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25198" e_stop="25285" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.970">
            <gDNA_intron_boundary i_start="25286" i_stop="25621" i_length="336"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25622" e_stop="25685" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.972">
            <gDNA_intron_boundary i_start="25686" i_stop="26964" i_length="1279"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26965" e_stop="27109" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.959" acc_prob="0.994">
            <gDNA_intron_boundary i_start="27110" i_stop="27200" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27201" e_stop="27358" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.178" acc_prob="0.960">
            <gDNA_intron_boundary i_start="27359" i_stop="29163" i_length="1805"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29164" e_stop="29284" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25198" stop="25285"/>
              <exon start="25622" stop="25685"/>
              <exon start="26965" stop="27109"/>
              <exon start="27201" stop="27358"/>
              <exon start="29164" stop="29284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTTCTCAAATTTACAGCAAAATTAGCTCAAAATTCTCTTCAATTTCTTCATCGAATGACCATAATGACTCCTGCTCCTACCGAT : GAAGAGGAGGAGATGCTTGTTCCGCGTTCAGATTTGGTATTTGAAGGACCTCAGCCTATGGAAG : CACAAGCAGAAACCGGCAATGATGTGGAAAAGCAGCCACCAGAGGATCCTCAAACTTCAAGGTTTACTTGGAAGATAGATAACTTCTCTAGGTTGAATGTAAAGAAACTATACTCTGACCCTTTTGTTGTCGGTGGCTATAAATG : GCGGATTTTAATTTTTCCCAAGGGGAACAATGTTGATTACCTATCCATGTATCTGGATGTTGCTGATTCAGCTAATTTACCTTACGGGTGGAGTAGATATGCCCAGTTCAACTTGTCAATTGTTAACCAAATTCATAACAAGTACTCCATCAGAAAAG : AGACACAACACCAATTCAATGCCAGAGAAAGTGATTGGGGTTTCACATCCTTTATGCCACTTGGTGAACTATATGATCCAAACAAAGGTTATCTTGTTGATGATACATGTGTTGTTGATGC</gDNA_template>
            <first_frame> F  S  S  Q  I  Y  S  K  I  S  S  K  F  S  S  I  S  S  S  N  D  H  N  D  S  C  S  Y  R   : *  R  G  G  D  A  C  S  A  F  R  F  G  I  *  R  T  S  A  Y  G  S :   T  S  R  N  R  Q  *  C  G  K  A  A  T  R  G  S  S  N  F  K  V  Y  L  E  D  R  *  L  L  *  V  E  C  K  E  T  I  L  *  P  F  C  C  R  W  L  *  M  :  A  D  F  N  F  S  Q  G  E  Q  C  *  L  P  I  H  V  S  G  C  C  *  F  S  *  F  T  L  R  V  E  *  I  C  P  V  Q  L  V  N  C  *  P  N  S  *  Q  V  L  H  Q  K  R :   D  T  T  P  I  Q  C  Q  R  K  *  L  G  F  H  I  L  Y  A  T  W  *  T  I  *  S  K  Q  R  L  S  C  *  *  Y  M  C  C  *  C </first_frame>
            <second_frame>  F  L  L  K  F  T  A  K  L  A  Q  N  S  L  Q  F  L  H  R  M  T  I  M  T  P  A  P  T  D  :  E  E  E  E  M  L  V  P  R  S  D  L  V  F  E  G  P  Q  P  M  E   : A  Q  A  E  T  G  N  D  V  E  K  Q  P  P  E  D  P  Q  T  S  R  F  T  W  K  I  D  N  F  S  R  L  N  V  K  K  L  Y  S  D  P  F  V  V  G  G  Y  K  W :   R  I  L  I  F  P  K  G  N  N  V  D  Y  L  S  M  Y  L  D  V  A  D  S  A  N  L  P  Y  G  W  S  R  Y  A  Q  F  N  L  S  I  V  N  Q  I  H  N  K  Y  S  I  R  K   : E  T  Q  H  Q  F  N  A  R  E  S  D  W  G  F  T  S  F  M  P  L  G  E  L  Y  D  P  N  K  G  Y  L  V  D  D  T  C  V  V  D   </second_frame>
            <third_frame>   F  F  S  N  L  Q  Q  N  *  L  K  I  L  F  N  F  F  I  E  *  P  *  *  L  L  L  L  P  M :   K  R  R  R  C  L  F  R  V  Q  I  W  Y  L  K  D  L  S  L  W  K  :  H  K  Q  K  P  A  M  M  W  K  S  S  H  Q  R  I  L  K  L  Q  G  L  L  G  R  *  I  T  S  L  G  *  M  *  R  N  Y  T  L  T  L  L  L  S  V  A  I  N   : G  G  F  *  F  F  P  R  G  T  M  L  I  T  Y  P  C  I  W  M  L  L  I  Q  L  I  Y  L  T  G  G  V  D  M  P  S  S  T  C  Q  L  L  T  K  F  I  T  S  T  P  S  E  K  :  R  H  N  T  N  S  M  P  E  K  V  I  G  V  S  H  P  L  C  H  L  V  N  Y  M  I  Q  T  K  V  I  L  L  M  I  H  V  L  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25199" stop="25285"/>
                    <exon start="25622" stop="25685"/>
                    <exon start="26965" stop="27109"/>
                    <exon start="27201" stop="27358"/>
                    <exon start="29164" stop="29282"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLKFTAKLAQNSLQFLHRMTIMTPAPTDEEEEMLVPRSDLVFEGPQPMEAQAETGNDVEKQPPEDPQTSRFTWKIDNFSRLNVKKLYSDPFVVGGYKWRILIFPKGNNVDYLSMYLDVADSANLPYGWSRYAQFNLSIVNQIHNKYSIRKETQHQFNARESDWGFTSFMPLGELYDPNKGYLVDDTCVVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29645" PGL_stop="33716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29645" e_stop="29731"/>
            <exon e_start="29807" e_stop="29915"/>
            <exon e_start="30007" e_stop="30122"/>
            <exon e_start="30337" e_stop="30435"/>
            <exon e_start="33611" e_stop="33716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29645" e_stop="29731" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="29732" i_stop="29806" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29807" e_stop="29915" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="29916" i_stop="30006" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30007" e_stop="30122" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.913" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30123" i_stop="30336" i_length="214"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30337" e_stop="30435" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30436" i_stop="33610" i_length="3175"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33611" e_stop="33716" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29645" stop="29731"/>
              <exon start="29807" stop="29915"/>
              <exon start="30007" stop="30122"/>
              <exon start="30337" stop="30435"/>
              <exon start="33611" stop="33716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATGGGACACATATGATTCTTTCTTGCAGCATGATGTGCAAGAACTCAATCGTGTTCTCTGTGAAAAGCTTGAAGAAAAAATGAAG : GGTACTGTTGTGGAAGGCACTATACAGCAGTTATTCGAAGGGCACCATATGAACTATATTGAGTGCATCAATGTGGACTACAAATCTACGAGAAAGGAGTCATTTTATG : ATCTTCAGCTTGATGTCAAAGGGTGTGCTGATGTTTATGCTTCGTTTGATAAATATGTTGAAGTTGAACGTCTTGAGGGCGATAACAAGTACCATGCCGAACAATATGGTTTGCAG : GATGCTAAGAAGGGTGTCTTATTCATGGATTTCCCCCCTGTCCTGCAGCTTCAGTTAAAGCGCTTTGAATATGATTTTTCACGGGACACTATGGTAAAG : ATAAATGACAGGTATGAGTTCCCTCTGCAACTCGATCTAGATAGAGAGAATGGTAAATACTTGTCGCCTGAGGCAGATGGAAGTGTCAGAAACCTTTACACACTTC</gDNA_template>
            <first_frame> G  W  D  T  Y  D  S  F  L  Q  H  D  V  Q  E  L  N  R  V  L  C  E  K  L  E  E  K  M  K  :  G  T  V  V  E  G  T  I  Q  Q  L  F  E  G  H  H  M  N  Y  I  E  C  I  N  V  D  Y  K  S  T  R  K  E  S  F  Y   : D  L  Q  L  D  V  K  G  C  A  D  V  Y  A  S  F  D  K  Y  V  E  V  E  R  L  E  G  D  N  K  Y  H  A  E  Q  Y  G  L  Q  :  D  A  K  K  G  V  L  F  M  D  F  P  P  V  L  Q  L  Q  L  K  R  F  E  Y  D  F  S  R  D  T  M  V  K  :  I  N  D  R  Y  E  F  P  L  Q  L  D  L  D  R  E  N  G  K  Y  L  S  P  E  A  D  G  S  V  R  N  L  Y  T  L  </first_frame>
            <second_frame>  D  G  T  H  M  I  L  S  C  S  M  M  C  K  N  S  I  V  F  S  V  K  S  L  K  K  K  *  R :   V  L  L  W  K  A  L  Y  S  S  Y  S  K  G  T  I  *  T  I  L  S  A  S  M  W  T  T  N  L  R  E  R  S  H  F  M  :  I  F  S  L  M  S  K  G  V  L  M  F  M  L  R  L  I  N  M  L  K  L  N  V  L  R  A  I  T  S  T  M  P  N  N  M  V  C  R :   M  L  R  R  V  S  Y  S  W  I  S  P  L  S  C  S  F  S  *  S  A  L  N  M  I  F  H  G  T  L  W  *  R :   *  M  T  G  M  S  S  L  C  N  S  I  *  I  E  R  M  V  N  T  C  R  L  R  Q  M  E  V  S  E  T  F  T  H  F </second_frame>
            <third_frame>   M  G  H  I  *  F  F  L  A  A  *  C  A  R  T  Q  S  C  S  L  *  K  A  *  R  K  N  E   : G  Y  C  C  G  R  H  Y  T  A  V  I  R  R  A  P  Y  E  L  Y  *  V  H  Q  C  G  L  Q  I  Y  E  K  G  V  I  L  * :   S  S  A  *  C  Q  R  V  C  *  C  L  C  F  V  *  *  I  C  *  S  *  T  S  *  G  R  *  Q  V  P  C  R  T  I  W  F  A   : G  C  *  E  G  C  L  I  H  G  F  P  P  C  P  A  A  S  V  K  A  L  *  I  *  F  F  T  G  H  Y  G  K   : D  K  *  Q  V  *  V  P  S  A  T  R  S  R  *  R  E  W  *  I  L  V  A  *  G  R  W  K  C  Q  K  P  L  H  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29645" stop="29731"/>
                    <exon start="29807" stop="29915"/>
                    <exon start="30007" stop="30122"/>
                    <exon start="30337" stop="30435"/>
                    <exon start="33611" stop="33715"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GWDTYDSFLQHDVQELNRVLCEKLEEKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCADVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFMDFPPVLQLQLKRFEYDFSRDTMVKINDRYEFPLQLDLDRENGKYLSPEADGSVRNLYTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="34776" PGL_stop="49687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37402" e_stop="37530"/>
            <exon e_start="37624" e_stop="37704"/>
            <exon e_start="37803" e_stop="37922"/>
            <exon e_start="38512" e_stop="38634"/>
            <exon e_start="39153" e_stop="39230"/>
            <exon e_start="39325" e_stop="39413"/>
            <exon e_start="39495" e_stop="39603"/>
            <exon e_start="40534" e_stop="40602"/>
            <exon e_start="40676" e_stop="40786"/>
            <exon e_start="41839" e_stop="41894"/>
            <exon e_start="42018" e_stop="42195"/>
            <exon e_start="42272" e_stop="42373"/>
            <exon e_start="42476" e_stop="42547"/>
            <exon e_start="42680" e_stop="42745"/>
            <exon e_start="42977" e_stop="43042"/>
            <exon e_start="44413" e_stop="44499"/>
            <exon e_start="44603" e_stop="44719"/>
            <exon e_start="44938" e_stop="45012"/>
            <exon e_start="45101" e_stop="45187"/>
            <exon e_start="45819" e_stop="46359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.496" acc_prob="0.483" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37402" e_stop="37530" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="37531" i_stop="37623" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37624" e_stop="37704" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.930">
            <gDNA_intron_boundary i_start="37705" i_stop="37802" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37803" e_stop="37922" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.982">
            <gDNA_intron_boundary i_start="37923" i_stop="38511" i_length="589"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38512" e_stop="38634" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.992">
            <gDNA_intron_boundary i_start="38635" i_stop="39152" i_length="518"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39153" e_stop="39230" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.741">
            <gDNA_intron_boundary i_start="39231" i_stop="39324" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39325" e_stop="39413" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39414" i_stop="39494" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39495" e_stop="39603" e_length="109"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.988">
            <gDNA_intron_boundary i_start="39604" i_stop="40533" i_length="930"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40534" e_stop="40602" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.985" acc_prob="0.990">
            <gDNA_intron_boundary i_start="40603" i_stop="40675" i_length="73"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="40676" e_stop="40786" e_length="111"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40787" i_stop="41838" i_length="1052"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="41839" e_stop="41894" e_length="56"/>
          </exon>
          <intron i_serial="10" don_prob="0.988" acc_prob="0.947">
            <gDNA_intron_boundary i_start="41895" i_stop="42017" i_length="123"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="42018" e_stop="42195" e_length="178"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.829">
            <gDNA_intron_boundary i_start="42196" i_stop="42271" i_length="76"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="42272" e_stop="42373" e_length="102"/>
          </exon>
          <intron i_serial="12" don_prob="0.953" acc_prob="0.989">
            <gDNA_intron_boundary i_start="42374" i_stop="42475" i_length="102"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="42476" e_stop="42547" e_length="72"/>
          </exon>
          <intron i_serial="13" don_prob="0.914" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42548" i_stop="42679" i_length="132"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="42680" e_stop="42745" e_length="66"/>
          </exon>
          <intron i_serial="14" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42746" i_stop="42976" i_length="231"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="42977" e_stop="43042" e_length="66"/>
          </exon>
          <intron i_serial="15" don_prob="0.924" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43043" i_stop="44412" i_length="1370"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="44413" e_stop="44499" e_length="87"/>
          </exon>
          <intron i_serial="16" don_prob="0.496" acc_prob="0.483">
            <gDNA_intron_boundary i_start="44500" i_stop="44602" i_length="103"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="44603" e_stop="44719" e_length="117"/>
          </exon>
          <intron i_serial="17" don_prob="0.993" acc_prob="0.981">
            <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="44938" e_stop="45012" e_length="75"/>
          </exon>
          <intron i_serial="18" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="45101" e_stop="45187" e_length="87"/>
          </exon>
          <intron i_serial="19" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631"/>
          </intron>
          <exon e_serial="20" e_score="0.976">
            <gDNA_exon_boundary e_start="45819" e_stop="46359" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37402" stop="37530"/>
              <exon start="37624" stop="37704"/>
              <exon start="37803" stop="37922"/>
              <exon start="38512" stop="38634"/>
              <exon start="39153" stop="39230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37514" stop="37530"/>
              <exon start="37624" stop="37704"/>
              <exon start="37803" stop="37922"/>
              <exon start="38512" stop="38634"/>
              <exon start="39153" stop="39230"/>
              <exon start="39325" stop="39413"/>
              <exon start="39495" stop="39562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37897" stop="37922"/>
              <exon start="38512" stop="38634"/>
              <exon start="39153" stop="39230"/>
              <exon start="39325" stop="39413"/>
              <exon start="39495" stop="39603"/>
              <exon start="40534" stop="40602"/>
              <exon start="40676" stop="40786"/>
              <exon start="41839" stop="41894"/>
              <exon start="42018" stop="42080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39333" stop="39413"/>
              <exon start="39495" stop="39603"/>
              <exon start="40534" stop="40602"/>
              <exon start="40676" stop="40786"/>
              <exon start="41839" stop="41894"/>
              <exon start="42018" stop="42110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39585" stop="39603"/>
              <exon start="40534" stop="40602"/>
              <exon start="40676" stop="40786"/>
              <exon start="41839" stop="41894"/>
              <exon start="42018" stop="42195"/>
              <exon start="42272" stop="42305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40690" stop="40786"/>
              <exon start="41839" stop="41894"/>
              <exon start="42018" stop="42195"/>
              <exon start="42272" stop="42373"/>
              <exon start="42476" stop="42514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42337" stop="42373"/>
              <exon start="42476" stop="42547"/>
              <exon start="42680" stop="42745"/>
              <exon start="42977" stop="43042"/>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42338" stop="42373"/>
              <exon start="42476" stop="42547"/>
              <exon start="42680" stop="42745"/>
              <exon start="42977" stop="43042"/>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="44980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42720" stop="42745"/>
              <exon start="42977" stop="43042"/>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="45964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44429" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="45996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44429" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="45908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44610" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44675" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44688" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270201" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45828" stop="46359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46004" stop="46359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46009" stop="46359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234343" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATTTAATAATACTCCCTTCAAATTTACTAAGTACTCAAATGCTTACATGCTGGTCTATATTCGGGAATGTGACAAAGAGAAAATAATGTGTAATGTTGACGAGAAGGACATTGCTGAGCACCTTAGG : GCAAGGTTAAAGAGAGAACAAGAAGAGAAAGAGCAGAAGAAGAAGGAGAAAGCAGAGGCACACCTTTACACAATTATAAAG : GTTTCTCGTGATGAAGACCTCAGACAGCAGATTGGGAAGGACATACATTTTGATTTAGTGGATTATGACAAAGTTAGGAGTTTTCGCATTCAGAAGCAGACACTTTTTAGCATTTTTAAG : GAGGAAGTTGCCAAAGAATTTGGTGTACCAGTGCAATCTCAACGTTTTTGGTTATGGGCAAAGCGCCAGAATCATACATATCGTCCAAATCGGCCATTAACACATCTCGAAGAAGCTCAAACT : GTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTTCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTG : GACTTGAGACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAG : GTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAATGGCTGGCTATGCCCCTGATCAAGAGATTGAACTATATGAG : GAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAG : CTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAG : GTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCT : GTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCATCCAAAATAAGGCTCACACCCCATAATTGTTACTCTCAGCAACCTAAACCCCAGCCGATCAAGTACAGAGGTGTTGACACCCTTGGAGATATGCTGGTCCACTACAATCAG : ACATCTGATATTTTGTACTATGAAGTACTGGACATTCCTTTGCCAGAATTGCAAGGTTTAAAAACCTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAA : GTGGTCACTTACACTATCAGACTACCAAAACAATCTACTGTTGGTGATGTAATTAATGATTTAAAGACGAAG : GTAGAGTTGTCAAATCCAGATGCAGAATTAAGATTGCTAGAGGTCTTCTACCACAAAATTTATAAG : ATATTTCCAACAAGTGAGAAGATAGAGAACATAAATGACCAGTACTGGACATTGAGGGCCGAAGAG : ATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATG : CAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAG : TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG : CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG : AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTTTGTCACAA</gDNA_template>
            <first_frame> G  F  N  N  T  P  F  K  F  T  K  Y  S  N  A  Y  M  L  V  Y  I  R  E  C  D  K  E  K  I  M  C  N  V  D  E  K  D  I  A  E  H  L  R  :  A  R  L  K  R  E  Q  E  E  K  E  Q  K  K  K  E  K  A  E  A  H  L  Y  T  I  I  K  :  V  S  R  D  E  D  L  R  Q  Q  I  G  K  D  I  H  F  D  L  V  D  Y  D  K  V  R  S  F  R  I  Q  K  Q  T  L  F  S  I  F  K  :  E  E  V  A  K  E  F  G  V  P  V  Q  S  Q  R  F  W  L  W  A  K  R  Q  N  H  T  Y  R  P  N  R  P  L  T  H  L  E  E  A  Q  T  :  V  G  Q  L  R  E  A  S  S  K  V  Q  N  A  E  L  K  L  F  L  E  V  E  L  G  L  :  D  L  R  H  I  P  P  P  D  K  T  K  D  D  I  M  L  F  F  K  I  Y  D  P  E  K  E  E  L  R :   Y  A  G  R  L  F  V  K  G  T  S  N  P  T  E  I  L  N  K  L  N  E  M  A  G  Y  A  P  D  Q  E  I  E  L  Y  E  :  E  I  K  F  E  P  I  V  L  C  E  P  I  N  K  K  F  A  F  R  T  N  Q  :  L  E  D  G  D  I  V  C  Y  Q  K  S  L  S  P  E  S  R  Q  K  L  R  Y  P  D  V  P  S  F  L  E  Y  V  Q  N  R  Q  :  V  V  H  F  R  Y  L  E  K  L  K  E  D  D  F  C  L  E  L :   S  K  I  N  T  Y  D  E  V  V  E  R  V  A  Q  R  L  G  L  D  D  P  S  K  I  R  L  T  P  H  N  C  Y  S  Q  Q  P  K  P  Q  P  I  K  Y  R  G  V  D  T  L  G  D  M  L  V  H  Y  N  Q  :  T  S  D  I  L  Y  Y  E  V  L  D  I  P  L  P  E  L  Q  G  L  K  T  L  K  V  A  F  H  H  A  T  K  D  E  :  V  V  T  Y  T  I  R  L  P  K  Q  S  T  V  G  D  V  I  N  D  L  K  T  K  :  V  E  L  S  N  P  D  A  E  L  R  L  L  E  V  F  Y  H  K  I  Y  K  :  I  F  P  T  S  E  K  I  E  N  I  N  D  Q  Y  W  T  L  R  A  E  E  :  I  P  E  E  E  K  N  L  G  P  N  A  R  L  I  H  V  Y  H  F  S  K  E  T  A  Q  N  Q  M  :  Q  I  Q  N  F  G  E  P  F  L  L  V  I  H  E  G  E  T  L  V  Q  V  K  V  R  I  Q  K  K  L  Q  V  P  D  E  E  F  A  K  :  W  K  F  A  F  L  S  L  G  R  P  E  Y  L  E  D  S  D  I  L  F  N  R  F  Q  :  R  K  D  V  Y  G  A  W  E  Q  Y  L  G  L  E  H  S  D  N  A  P  K  R  I  N  A  A  Y  Q  :  N  R  P  T  Y  E  K  P  V  K  I  Y  N  *  *  R  R  *  K  *  R  L  *  D  G  S  N  L  *  L  T  I  A  F  V  P  E  V  K  K  P  V  R  V  C  T  G  F  Y  D  F  C  Y  *  S  I  L  Y  S  D  M  D  V  K  F  D  P  N  A  A  S  I  S  Q  Y  L  N  S  S  D  A  *  M  A  H  R  *  L  S  L  C  S  S  V  S  *  A  S  H  T  L  A  K  N  F  E  Q  M  N  E  Y  I  I  Y  C  A  *  F  S  S  D  F  Y  L  R  R  R  V  L  L  S  F  L  P  F  F  G  L  Y  R  C  D  Y  F  W  *  R  F  *  G  F  S  L  *  N  C  V  T  L  S  L  V  I  S  C  Y  C  N  *  P  V  I  K  N  D  K  L  F  V  T  </first_frame>
            <second_frame>  D  L  I  I  L  P  S  N  L  L  S  T  Q  M  L  T  C  W  S  I  F  G  N  V  T  K  R  K  *  C  V  M  L  T  R  R  T  L  L  S  T  L  G :   Q  G  *  R  E  N  K  K  R  K  S  R  R  R  R  R  K  Q  R  H  T  F  T  Q  L  *  R :   F  L  V  M  K  T  S  D  S  R  L  G  R  T  Y  I  L  I  *  W  I  M  T  K  L  G  V  F  A  F  R  S  R  H  F  L  A  F  L  R :   R  K  L  P  K  N  L  V  Y  Q  C  N  L  N  V  F  G  Y  G  Q  S  A  R  I  I  H  I  V  Q  I  G  H  *  H  I  S  K  K  L  K  L :   L  D  S  *  G  K  R  Q  V  R  F  R  M  Q  S  *  N  C  S  W  K  W  S  L  D  W :   T  *  D  T  S  L  H  L  T  R  L  K  M  I  L  C  Y  S  S  R  F  M  I  L  R  K  K  S  *   : G  M  L  E  D  S  L  *  R  E  R  V  I  Q  L  K  S  *  T  N  *  M  K  W  L  A  M  P  L  I  K  R  L  N  Y  M  R :   K  *  N  L  N  R  L  S  C  V  N  P  L  T  R  N  L  L  S  E  R  T  S :   L  R  M  V  I  *  Y  A  I  R  N  P  F  L  L  K  V  A  R  S  Y  G  I  Q  M  F  L  L  S  W  S  M  F  K  I  A  R :   W  F  T  S  D  T  *  K  S  *  R  R  M  I  S  V  *  S   : C  Q  R  L  I  H  M  M  K  L  W  K  E  *  L  S  D  L  A  W  M  I  H  P  K  *  G  S  H  P  I  I  V  T  L  S  N  L  N  P  S  R  S  S  T  E  V  L  T  P  L  E  I  C  W  S  T  T  I  R :   H  L  I  F  C  T  M  K  Y  W  T  F  L  C  Q  N  C  K  V  *  K  P  *  K  *  L  F  I  M  L  P  K  M  K :   W  S  L  T  L  S  D  Y  Q  N  N  L  L  L  V  M  *  L  M  I  *  R  R  R :   *  S  C  Q  I  Q  M  Q  N  *  D  C  *  R  S  S  T  T  K  F  I  R :   Y  F  Q  Q  V  R  R  *  R  T  *  M  T  S  T  G  H  *  G  P  K  R :   F  L  K  K  R  R  I  *  A  R  M  L  V  *  F  M  C  I  T  S  V  K  K  L  H  K  T  K  C :   K  F  R  I  L  G  N  L  S  S  W  L  S  M  R  V  R  L  *  F  K  *  R  C  E  Y  R  R  N  C  R  S  Q  M  K  S  L  L  S :   G  N  L  H  S  S  H  L  V  V  L  S  T  L  R  T  R  I  Y  C  S  T  V  S  S :   E  R  M  F  M  V  L  G  S  S  I  L  A  W  N  I  L  T  M  P  L  K  G  L  M  Q  H  I  R :   I  A  R  R  T  R  S  L  L  K  F  T  T  S  N  A  A  E  N  E  D  C  E  M  V  Q  I  Y  D  *  P  L  H  L  S  L  K  L  R  S  Q  F  E  S  V  Q  G  F  M  I  F  V  T  E  A  S  C  I  L  I  W  M  *  S  L  I  L  M  Q  H  P  Y  L  S  T  *  T  Q  V  M  R  K  W  P  I  D  N  S  L  S  V  L  V  *  V  K  R  A  I  H  W  Q  R  I  L  N  K  *  M  N  T  *  Y  I  V  L  D  S  V  L  T  F  I  *  G  E  E  Y  Y  S  V  F  C  H  F  L  G  S  I  D  V  I  I  S  G  R  D  F  E  V  F  P  S  E  I  V  *  P  *  V  W  *  F  L  A  I  V  I  N  Q  *  L  R  M  T  N  C  L  S  Q </second_frame>
            <third_frame>   I  *  *  Y  S  L  Q  I  Y  *  V  L  K  C  L  H  A  G  L  Y  S  G  M  *  Q  R  E  N  N  V  *  C  *  R  E  G  H  C  *  A  P  *   : G  K  V  K  E  R  T  R  R  E  R  A  E  E  E  G  E  S  R  G  T  P  L  H  N  Y  K   : G  F  S  *  *  R  P  Q  T  A  D  W  E  G  H  T  F  *  F  S  G  L  *  Q  S  *  E  F  S  H  S  E  A  D  T  F  *  H  F  *   : G  G  S  C  Q  R  I  W  C  T  S  A  I  S  T  F  L  V  M  G  K  A  P  E  S  Y  I  S  S  K  S  A  I  N  T  S  R  R  S  S  N   : C  W  T  V  E  G  S  V  K  *  G  S  E  C  R  A  K  I  V  L  G  S  G  A  W  T   : G  L  E  T  H  P  S  T  *  Q  D  *  R  *  Y  Y  A  I  L  Q  D  L  *  S  *  E  R  R  A  E  :  V  C  W  K  T  L  C  K  G  N  E  *  S  N  *  N  L  E  Q  T  K  *  N  G  W  L  C  P  *  S  R  D  *  T  I  *   : G  N  K  I  *  T  D  C  L  V  *  T  H  *  Q  E  I  C  F  P  N  E  P   : A  *  G  W  *  Y  S  M  L  S  E  I  P  F  S  *  K  S  P  E  V  T  V  S  R  C  S  F  F  P  G  V  C  S  K  S  P   : G  G  S  L  P  I  L  R  K  V  E  G  G  *  F  L  F  R  A  :  V  K  D  *  Y  I  *  *  S  C  G  K  S  S  S  A  T  W  L  G  *  S  I  Q  N  K  A  H  T  P  *  L  L  L  S  A  T  *  T  P  A  D  Q  V  Q  R  C  *  H  P  W  R  Y  A  G  P  L  Q  S   : D  I  *  Y  F  V  L  *  S  T  G  H  S  F  A  R  I  A  R  F  K  N  L  K  S  S  F  S  S  C  Y  Q  R  *   : S  G  H  L  H  Y  Q  T  T  K  T  I  Y  C  W  *  C  N  *  *  F  K  D  E   : G  R  V  V  K  S  R  C  R  I  K  I  A  R  G  L  L  P  Q  N  L  *   : D  I  S  N  K  *  E  D  R  E  H  K  *  P  V  L  D  I  E  G  R  R   : D  S  *  R  R  E  E  S  R  P  E  C  S  F  D  S  C  V  S  L  Q  *  R  N  C  T  K  P  N   : A  N  S  E  F  W  G  T  F  P  L  G  Y  P  *  G  *  D  F  S  S  S  E  G  A  N  T  E  E  I  A  G  P  R  *  R  V  C  *   : V  E  I  C  I  P  L  T  W  S  S  *  V  P  *  G  L  G  Y  I  V  Q  P  F  P   : A  K  G  C  L  W  C  L  G  A  V  S  W  L  G  T  F  *  Q  C  P  *  K  D  *  C  S  I  S   : E  S  P  D  V  R  E  A  C  *  N  L  Q  L  V  T  P  L  K  M  K  I  V  R  W  F  K  S  M  I  D  H  C  I  C  P  *  S  *  E  A  S  S  S  L  Y  R  V  L  *  F  L  L  L  K  H  L  V  F  *  Y  G  C  E  V  *  S  *  C  S  I  H  I  S  V  L  E  L  K  *  C  V  N  G  P  S  I  T  L  S  L  F  *  C  K  L  S  E  P  Y  I  G  K  E  F  *  T  N  E  *  I  H  N  I  L  C  L  I  Q  F  *  L  L  S  E  E  K  S  T  T  Q  F  S  A  I  F  W  A  L  *  M  *  L  F  L  V  E  I  L  R  F  F  P  L  K  L  C  N  L  K  F  G  N  F  L  L  L  *  L  T  S  N  *  E  *  Q  I  V  C  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37402" stop="37530"/>
                    <exon start="37624" stop="37704"/>
                    <exon start="37803" stop="37922"/>
                    <exon start="38512" stop="38634"/>
                    <exon start="39153" stop="39230"/>
                    <exon start="39325" stop="39413"/>
                    <exon start="39495" stop="39603"/>
                    <exon start="40534" stop="40602"/>
                    <exon start="40676" stop="40786"/>
                    <exon start="41839" stop="41894"/>
                    <exon start="42018" stop="42195"/>
                    <exon start="42272" stop="42373"/>
                    <exon start="42476" stop="42547"/>
                    <exon start="42680" stop="42745"/>
                    <exon start="42977" stop="43042"/>
                    <exon start="44413" stop="44499"/>
                    <exon start="44603" stop="44719"/>
                    <exon start="44938" stop="45012"/>
                    <exon start="45101" stop="45187"/>
                    <exon start="45819" stop="45860"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1854</number_coding_nucleotides>
                  <number_encoded_amino_acids>618</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFNNTPFKFTKYSNAYMLVYIRECDKEKIMCNVDEKDIAEHLRARLKREQEEKEQKKKEKAEAHLYTIIKVSRDEDLRQQIGKDIHFDLVDYDKVRSFRIQKQTLFSIFKEEVAKEFGVPVQSQRFWLWAKRQNHTYRPNRPLTHLEEAQTVGQLREASSKVQNAELKLFLEVELGLDLRHIPPPDKTKDDIMLFFKIYDPEKEELRYAGRLFVKGTSNPTEILNKLNEMAGYAPDQEIELYEEIKFEPIVLCEPINKKFAFRTNQLEDGDIVCYQKSLSPESRQKLRYPDVPSFLEYVQNRQVVHFRYLEKLKEDDFCLELSKINTYDEVVERVAQRLGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVDTLGDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVTYTIRLPKQSTVGDVINDLKTKVELSNPDAELRLLEVFYHKIYKIFPTSEKIENINDQYWTLRAEEIPEEEKNLGPNARLIHVYHFSKETAQNQMQIQNFGEPFLLVIHEGETLVQVKVRIQKKLQVPDEEFAKWKFAFLSLGRPEYLEDSDILFNRFQRKDVYGAWEQYLGLEHSDNAPKRINAAYQNRPTYEKPVKIYN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37402" e_stop="37530"/>
            <exon e_start="37624" e_stop="37704"/>
            <exon e_start="37803" e_stop="37922"/>
            <exon e_start="38512" e_stop="38634"/>
            <exon e_start="39153" e_stop="39230"/>
            <exon e_start="39325" e_stop="39413"/>
            <exon e_start="39495" e_stop="39603"/>
            <exon e_start="40534" e_stop="40602"/>
            <exon e_start="40676" e_stop="40786"/>
            <exon e_start="41839" e_stop="41894"/>
            <exon e_start="42018" e_stop="42195"/>
            <exon e_start="42272" e_stop="42373"/>
            <exon e_start="42476" e_stop="42547"/>
            <exon e_start="42680" e_stop="42745"/>
            <exon e_start="42977" e_stop="43042"/>
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            <exon e_start="45819" e_stop="46351"/>
            <exon e_start="47108" e_stop="47129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.496" acc_prob="0.483" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.864"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37402" e_stop="37530" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.990">
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            <gDNA_exon_boundary e_start="37624" e_stop="37704" e_length="81"/>
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          <intron i_serial="2" don_prob="0.965" acc_prob="0.930">
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          <exon e_serial="3" e_score="1.000">
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          <intron i_serial="3" don_prob="0.974" acc_prob="0.982">
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          <exon e_serial="4" e_score="1.000">
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          <intron i_serial="4" don_prob="0.984" acc_prob="0.992">
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          <intron i_serial="5" don_prob="0.996" acc_prob="0.741">
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          </intron>
          <exon e_serial="6" e_score="1.000">
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          <intron i_serial="6" don_prob="0.999" acc_prob="0.998">
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          </intron>
          <exon e_serial="7" e_score="1.000">
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          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.988">
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          </intron>
          <exon e_serial="8" e_score="1.000">
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          <intron i_serial="8" don_prob="0.985" acc_prob="0.990">
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          </intron>
          <exon e_serial="9" e_score="1.000">
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          <intron i_serial="9" don_prob="0.995" acc_prob="0.997">
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          <exon e_serial="10" e_score="1.000">
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          <intron i_serial="10" don_prob="0.988" acc_prob="0.947">
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          <intron i_serial="12" don_prob="0.953" acc_prob="0.989">
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          </intron>
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          <intron i_serial="13" don_prob="0.914" acc_prob="0.991">
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          </intron>
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          <intron i_serial="15" don_prob="0.924" acc_prob="0.997">
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          </intron>
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          <intron i_serial="17" don_prob="0.993" acc_prob="0.981">
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          <intron i_serial="19" don_prob="0.994" acc_prob="0.958">
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          </intron>
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          </exon>
          <intron i_serial="20" don_prob="0.000" acc_prob="0.000">
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          </intron>
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          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
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              <exon start="37402" stop="37530"/>
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              <exon start="37803" stop="37922"/>
              <exon start="38512" stop="38634"/>
              <exon start="39153" stop="39230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37514" stop="37530"/>
              <exon start="37624" stop="37704"/>
              <exon start="37803" stop="37922"/>
              <exon start="38512" stop="38634"/>
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              <exon start="39325" stop="39413"/>
              <exon start="39495" stop="39562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319910" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="37897" stop="37922"/>
              <exon start="38512" stop="38634"/>
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              <exon start="40534" stop="40602"/>
              <exon start="40676" stop="40786"/>
              <exon start="41839" stop="41894"/>
              <exon start="42018" stop="42080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39333" stop="39413"/>
              <exon start="39495" stop="39603"/>
              <exon start="40534" stop="40602"/>
              <exon start="40676" stop="40786"/>
              <exon start="41839" stop="41894"/>
              <exon start="42018" stop="42110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39585" stop="39603"/>
              <exon start="40534" stop="40602"/>
              <exon start="40676" stop="40786"/>
              <exon start="41839" stop="41894"/>
              <exon start="42018" stop="42195"/>
              <exon start="42272" stop="42305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40690" stop="40786"/>
              <exon start="41839" stop="41894"/>
              <exon start="42018" stop="42195"/>
              <exon start="42272" stop="42373"/>
              <exon start="42476" stop="42514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42337" stop="42373"/>
              <exon start="42476" stop="42547"/>
              <exon start="42680" stop="42745"/>
              <exon start="42977" stop="43042"/>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
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              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42338" stop="42373"/>
              <exon start="42476" stop="42547"/>
              <exon start="42680" stop="42745"/>
              <exon start="42977" stop="43042"/>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="44980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42720" stop="42745"/>
              <exon start="42977" stop="43042"/>
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              <exon start="45819" stop="45964"/>
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            <referenceDNA id="SGN-E250721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
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              <exon start="45819" stop="46050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44429" stop="44499"/>
              <exon start="44603" stop="44719"/>
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              <exon start="45819" stop="45996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44429" stop="44499"/>
              <exon start="44603" stop="44719"/>
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              <exon start="45819" stop="45908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44610" stop="44719"/>
              <exon start="44938" stop="45012"/>
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              <exon start="45819" stop="46279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44653" stop="44719"/>
              <exon start="44938" stop="45012"/>
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              <exon start="47108" stop="47129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44675" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44688" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270201" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATTTAATAATACTCCCTTCAAATTTACTAAGTACTCAAATGCTTACATGCTGGTCTATATTCGGGAATGTGACAAAGAGAAAATAATGTGTAATGTTGACGAGAAGGACATTGCTGAGCACCTTAGG : GCAAGGTTAAAGAGAGAACAAGAAGAGAAAGAGCAGAAGAAGAAGGAGAAAGCAGAGGCACACCTTTACACAATTATAAAG : GTTTCTCGTGATGAAGACCTCAGACAGCAGATTGGGAAGGACATACATTTTGATTTAGTGGATTATGACAAAGTTAGGAGTTTTCGCATTCAGAAGCAGACACTTTTTAGCATTTTTAAG : GAGGAAGTTGCCAAAGAATTTGGTGTACCAGTGCAATCTCAACGTTTTTGGTTATGGGCAAAGCGCCAGAATCATACATATCGTCCAAATCGGCCATTAACACATCTCGAAGAAGCTCAAACT : GTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTTCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTG : GACTTGAGACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAG : GTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAATGGCTGGCTATGCCCCTGATCAAGAGATTGAACTATATGAG : GAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAG : CTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAG : GTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCT : GTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCATCCAAAATAAGGCTCACACCCCATAATTGTTACTCTCAGCAACCTAAACCCCAGCCGATCAAGTACAGAGGTGTTGACACCCTTGGAGATATGCTGGTCCACTACAATCAG : ACATCTGATATTTTGTACTATGAAGTACTGGACATTCCTTTGCCAGAATTGCAAGGTTTAAAAACCTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAA : GTGGTCACTTACACTATCAGACTACCAAAACAATCTACTGTTGGTGATGTAATTAATGATTTAAAGACGAAG : GTAGAGTTGTCAAATCCAGATGCAGAATTAAGATTGCTAGAGGTCTTCTACCACAAAATTTATAAG : ATATTTCCAACAAGTGAGAAGATAGAGAACATAAATGACCAGTACTGGACATTGAGGGCCGAAGAG : ATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATG : CAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAG : TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG : CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG : AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTT : GTAAAAAAAAAGAACAAAAAAA</gDNA_template>
            <first_frame> G  F  N  N  T  P  F  K  F  T  K  Y  S  N  A  Y  M  L  V  Y  I  R  E  C  D  K  E  K  I  M  C  N  V  D  E  K  D  I  A  E  H  L  R  :  A  R  L  K  R  E  Q  E  E  K  E  Q  K  K  K  E  K  A  E  A  H  L  Y  T  I  I  K  :  V  S  R  D  E  D  L  R  Q  Q  I  G  K  D  I  H  F  D  L  V  D  Y  D  K  V  R  S  F  R  I  Q  K  Q  T  L  F  S  I  F  K  :  E  E  V  A  K  E  F  G  V  P  V  Q  S  Q  R  F  W  L  W  A  K  R  Q  N  H  T  Y  R  P  N  R  P  L  T  H  L  E  E  A  Q  T  :  V  G  Q  L  R  E  A  S  S  K  V  Q  N  A  E  L  K  L  F  L  E  V  E  L  G  L  :  D  L  R  H  I  P  P  P  D  K  T  K  D  D  I  M  L  F  F  K  I  Y  D  P  E  K  E  E  L  R :   Y  A  G  R  L  F  V  K  G  T  S  N  P  T  E  I  L  N  K  L  N  E  M  A  G  Y  A  P  D  Q  E  I  E  L  Y  E  :  E  I  K  F  E  P  I  V  L  C  E  P  I  N  K  K  F  A  F  R  T  N  Q  :  L  E  D  G  D  I  V  C  Y  Q  K  S  L  S  P  E  S  R  Q  K  L  R  Y  P  D  V  P  S  F  L  E  Y  V  Q  N  R  Q  :  V  V  H  F  R  Y  L  E  K  L  K  E  D  D  F  C  L  E  L :   S  K  I  N  T  Y  D  E  V  V  E  R  V  A  Q  R  L  G  L  D  D  P  S  K  I  R  L  T  P  H  N  C  Y  S  Q  Q  P  K  P  Q  P  I  K  Y  R  G  V  D  T  L  G  D  M  L  V  H  Y  N  Q  :  T  S  D  I  L  Y  Y  E  V  L  D  I  P  L  P  E  L  Q  G  L  K  T  L  K  V  A  F  H  H  A  T  K  D  E  :  V  V  T  Y  T  I  R  L  P  K  Q  S  T  V  G  D  V  I  N  D  L  K  T  K  :  V  E  L  S  N  P  D  A  E  L  R  L  L  E  V  F  Y  H  K  I  Y  K  :  I  F  P  T  S  E  K  I  E  N  I  N  D  Q  Y  W  T  L  R  A  E  E  :  I  P  E  E  E  K  N  L  G  P  N  A  R  L  I  H  V  Y  H  F  S  K  E  T  A  Q  N  Q  M  :  Q  I  Q  N  F  G  E  P  F  L  L  V  I  H  E  G  E  T  L  V  Q  V  K  V  R  I  Q  K  K  L  Q  V  P  D  E  E  F  A  K  :  W  K  F  A  F  L  S  L  G  R  P  E  Y  L  E  D  S  D  I  L  F  N  R  F  Q  :  R  K  D  V  Y  G  A  W  E  Q  Y  L  G  L  E  H  S  D  N  A  P  K  R  I  N  A  A  Y  Q  :  N  R  P  T  Y  E  K  P  V  K  I  Y  N  *  *  R  R  *  K  *  R  L  *  D  G  S  N  L  *  L  T  I  A  F  V  P  E  V  K  K  P  V  R  V  C  T  G  F  Y  D  F  C  Y  *  S  I  L  Y  S  D  M  D  V  K  F  D  P  N  A  A  S  I  S  Q  Y  L  N  S  S  D  A  *  M  A  H  R  *  L  S  L  C  S  S  V  S  *  A  S  H  T  L  A  K  N  F  E  Q  M  N  E  Y  I  I  Y  C  A  *  F  S  S  D  F  Y  L  R  R  R  V  L  L  S  F  L  P  F  F  G  L  Y  R  C  D  Y  F  W  *  R  F  *  G  F  S  L  *  N  C  V  T  L  S  L  V  I  S  C  Y  C  N  *  P  V  I  K  N  D  K  L  L :   *  K  K  R  T  K  K </first_frame>
            <second_frame>  D  L  I  I  L  P  S  N  L  L  S  T  Q  M  L  T  C  W  S  I  F  G  N  V  T  K  R  K  *  C  V  M  L  T  R  R  T  L  L  S  T  L  G :   Q  G  *  R  E  N  K  K  R  K  S  R  R  R  R  R  K  Q  R  H  T  F  T  Q  L  *  R :   F  L  V  M  K  T  S  D  S  R  L  G  R  T  Y  I  L  I  *  W  I  M  T  K  L  G  V  F  A  F  R  S  R  H  F  L  A  F  L  R :   R  K  L  P  K  N  L  V  Y  Q  C  N  L  N  V  F  G  Y  G  Q  S  A  R  I  I  H  I  V  Q  I  G  H  *  H  I  S  K  K  L  K  L :   L  D  S  *  G  K  R  Q  V  R  F  R  M  Q  S  *  N  C  S  W  K  W  S  L  D  W :   T  *  D  T  S  L  H  L  T  R  L  K  M  I  L  C  Y  S  S  R  F  M  I  L  R  K  K  S  *   : G  M  L  E  D  S  L  *  R  E  R  V  I  Q  L  K  S  *  T  N  *  M  K  W  L  A  M  P  L  I  K  R  L  N  Y  M  R :   K  *  N  L  N  R  L  S  C  V  N  P  L  T  R  N  L  L  S  E  R  T  S :   L  R  M  V  I  *  Y  A  I  R  N  P  F  L  L  K  V  A  R  S  Y  G  I  Q  M  F  L  L  S  W  S  M  F  K  I  A  R :   W  F  T  S  D  T  *  K  S  *  R  R  M  I  S  V  *  S   : C  Q  R  L  I  H  M  M  K  L  W  K  E  *  L  S  D  L  A  W  M  I  H  P  K  *  G  S  H  P  I  I  V  T  L  S  N  L  N  P  S  R  S  S  T  E  V  L  T  P  L  E  I  C  W  S  T  T  I  R :   H  L  I  F  C  T  M  K  Y  W  T  F  L  C  Q  N  C  K  V  *  K  P  *  K  *  L  F  I  M  L  P  K  M  K :   W  S  L  T  L  S  D  Y  Q  N  N  L  L  L  V  M  *  L  M  I  *  R  R  R :   *  S  C  Q  I  Q  M  Q  N  *  D  C  *  R  S  S  T  T  K  F  I  R :   Y  F  Q  Q  V  R  R  *  R  T  *  M  T  S  T  G  H  *  G  P  K  R :   F  L  K  K  R  R  I  *  A  R  M  L  V  *  F  M  C  I  T  S  V  K  K  L  H  K  T  K  C :   K  F  R  I  L  G  N  L  S  S  W  L  S  M  R  V  R  L  *  F  K  *  R  C  E  Y  R  R  N  C  R  S  Q  M  K  S  L  L  S :   G  N  L  H  S  S  H  L  V  V  L  S  T  L  R  T  R  I  Y  C  S  T  V  S  S :   E  R  M  F  M  V  L  G  S  S  I  L  A  W  N  I  L  T  M  P  L  K  G  L  M  Q  H  I  R :   I  A  R  R  T  R  S  L  L  K  F  T  T  S  N  A  A  E  N  E  D  C  E  M  V  Q  I  Y  D  *  P  L  H  L  S  L  K  L  R  S  Q  F  E  S  V  Q  G  F  M  I  F  V  T  E  A  S  C  I  L  I  W  M  *  S  L  I  L  M  Q  H  P  Y  L  S  T  *  T  Q  V  M  R  K  W  P  I  D  N  S  L  S  V  L  V  *  V  K  R  A  I  H  W  Q  R  I  L  N  K  *  M  N  T  *  Y  I  V  L  D  S  V  L  T  F  I  *  G  E  E  Y  Y  S  V  F  C  H  F  L  G  S  I  D  V  I  I  S  G  R  D  F  E  V  F  P  S  E  I  V  *  P  *  V  W  *  F  L  A  I  V  I  N  Q  *  L  R  M  T  N  C   : C  K  K  K  E  Q  K   </second_frame>
            <third_frame>   I  *  *  Y  S  L  Q  I  Y  *  V  L  K  C  L  H  A  G  L  Y  S  G  M  *  Q  R  E  N  N  V  *  C  *  R  E  G  H  C  *  A  P  *   : G  K  V  K  E  R  T  R  R  E  R  A  E  E  E  G  E  S  R  G  T  P  L  H  N  Y  K   : G  F  S  *  *  R  P  Q  T  A  D  W  E  G  H  T  F  *  F  S  G  L  *  Q  S  *  E  F  S  H  S  E  A  D  T  F  *  H  F  *   : G  G  S  C  Q  R  I  W  C  T  S  A  I  S  T  F  L  V  M  G  K  A  P  E  S  Y  I  S  S  K  S  A  I  N  T  S  R  R  S  S  N   : C  W  T  V  E  G  S  V  K  *  G  S  E  C  R  A  K  I  V  L  G  S  G  A  W  T   : G  L  E  T  H  P  S  T  *  Q  D  *  R  *  Y  Y  A  I  L  Q  D  L  *  S  *  E  R  R  A  E  :  V  C  W  K  T  L  C  K  G  N  E  *  S  N  *  N  L  E  Q  T  K  *  N  G  W  L  C  P  *  S  R  D  *  T  I  *   : G  N  K  I  *  T  D  C  L  V  *  T  H  *  Q  E  I  C  F  P  N  E  P   : A  *  G  W  *  Y  S  M  L  S  E  I  P  F  S  *  K  S  P  E  V  T  V  S  R  C  S  F  F  P  G  V  C  S  K  S  P   : G  G  S  L  P  I  L  R  K  V  E  G  G  *  F  L  F  R  A  :  V  K  D  *  Y  I  *  *  S  C  G  K  S  S  S  A  T  W  L  G  *  S  I  Q  N  K  A  H  T  P  *  L  L  L  S  A  T  *  T  P  A  D  Q  V  Q  R  C  *  H  P  W  R  Y  A  G  P  L  Q  S   : D  I  *  Y  F  V  L  *  S  T  G  H  S  F  A  R  I  A  R  F  K  N  L  K  S  S  F  S  S  C  Y  Q  R  *   : S  G  H  L  H  Y  Q  T  T  K  T  I  Y  C  W  *  C  N  *  *  F  K  D  E   : G  R  V  V  K  S  R  C  R  I  K  I  A  R  G  L  L  P  Q  N  L  *   : D  I  S  N  K  *  E  D  R  E  H  K  *  P  V  L  D  I  E  G  R  R   : D  S  *  R  R  E  E  S  R  P  E  C  S  F  D  S  C  V  S  L  Q  *  R  N  C  T  K  P  N   : A  N  S  E  F  W  G  T  F  P  L  G  Y  P  *  G  *  D  F  S  S  S  E  G  A  N  T  E  E  I  A  G  P  R  *  R  V  C  *   : V  E  I  C  I  P  L  T  W  S  S  *  V  P  *  G  L  G  Y  I  V  Q  P  F  P   : A  K  G  C  L  W  C  L  G  A  V  S  W  L  G  T  F  *  Q  C  P  *  K  D  *  C  S  I  S   : E  S  P  D  V  R  E  A  C  *  N  L  Q  L  V  T  P  L  K  M  K  I  V  R  W  F  K  S  M  I  D  H  C  I  C  P  *  S  *  E  A  S  S  S  L  Y  R  V  L  *  F  L  L  L  K  H  L  V  F  *  Y  G  C  E  V  *  S  *  C  S  I  H  I  S  V  L  E  L  K  *  C  V  N  G  P  S  I  T  L  S  L  F  *  C  K  L  S  E  P  Y  I  G  K  E  F  *  T  N  E  *  I  H  N  I  L  C  L  I  Q  F  *  L  L  S  E  E  K  S  T  T  Q  F  S  A  I  F  W  A  L  *  M  *  L  F  L  V  E  I  L  R  F  F  P  L  K  L  C  N  L  K  F  G  N  F  L  L  L  *  L  T  S  N  *  E  *  Q  I  V  :  V  K  K  K  N  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37402" stop="37530"/>
                    <exon start="37624" stop="37704"/>
                    <exon start="37803" stop="37922"/>
                    <exon start="38512" stop="38634"/>
                    <exon start="39153" stop="39230"/>
                    <exon start="39325" stop="39413"/>
                    <exon start="39495" stop="39603"/>
                    <exon start="40534" stop="40602"/>
                    <exon start="40676" stop="40786"/>
                    <exon start="41839" stop="41894"/>
                    <exon start="42018" stop="42195"/>
                    <exon start="42272" stop="42373"/>
                    <exon start="42476" stop="42547"/>
                    <exon start="42680" stop="42745"/>
                    <exon start="42977" stop="43042"/>
                    <exon start="44413" stop="44499"/>
                    <exon start="44603" stop="44719"/>
                    <exon start="44938" stop="45012"/>
                    <exon start="45101" stop="45187"/>
                    <exon start="45819" stop="45860"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1854</number_coding_nucleotides>
                  <number_encoded_amino_acids>618</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFNNTPFKFTKYSNAYMLVYIRECDKEKIMCNVDEKDIAEHLRARLKREQEEKEQKKKEKAEAHLYTIIKVSRDEDLRQQIGKDIHFDLVDYDKVRSFRIQKQTLFSIFKEEVAKEFGVPVQSQRFWLWAKRQNHTYRPNRPLTHLEEAQTVGQLREASSKVQNAELKLFLEVELGLDLRHIPPPDKTKDDIMLFFKIYDPEKEELRYAGRLFVKGTSNPTEILNKLNEMAGYAPDQEIELYEEIKFEPIVLCEPINKKFAFRTNQLEDGDIVCYQKSLSPESRQKLRYPDVPSFLEYVQNRQVVHFRYLEKLKEDDFCLELSKINTYDEVVERVAQRLGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVDTLGDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVTYTIRLPKQSTVGDVINDLKTKVELSNPDAELRLLEVFYHKIYKIFPTSEKIENINDQYWTLRAEEIPEEEKNLGPNARLIHVYHFSKETAQNQMQIQNFGEPFLLVIHEGETLVQVKVRIQKKLQVPDEEFAKWKFAFLSLGRPEYLEDSDILFNRFQRKDVYGAWEQYLGLEHSDNAPKRINAAYQNRPTYEKPVKIYN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="39144" e_stop="39230"/>
            <exon e_start="39307" e_stop="39413"/>
            <exon e_start="39495" e_stop="39603"/>
            <exon e_start="40534" e_stop="40602"/>
            <exon e_start="40676" e_stop="40786"/>
            <exon e_start="41839" e_stop="41894"/>
            <exon e_start="42018" e_stop="42195"/>
            <exon e_start="42272" e_stop="42373"/>
            <exon e_start="42476" e_stop="42547"/>
            <exon e_start="42680" e_stop="42745"/>
            <exon e_start="42977" e_stop="43042"/>
            <exon e_start="44413" e_stop="44499"/>
            <exon e_start="44603" e_stop="44719"/>
            <exon e_start="44938" e_stop="45012"/>
            <exon e_start="45101" e_stop="45187"/>
            <exon e_start="45819" e_stop="46359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.838" e_score="0.977"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.496" acc_prob="0.483" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="39144" e_stop="39230" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.838">
            <gDNA_intron_boundary i_start="39231" i_stop="39306" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39307" e_stop="39413" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39414" i_stop="39494" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39495" e_stop="39603" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.988">
            <gDNA_intron_boundary i_start="39604" i_stop="40533" i_length="930"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40534" e_stop="40602" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.990">
            <gDNA_intron_boundary i_start="40603" i_stop="40675" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40676" e_stop="40786" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40787" i_stop="41838" i_length="1052"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41839" e_stop="41894" e_length="56"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.947">
            <gDNA_intron_boundary i_start="41895" i_stop="42017" i_length="123"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42018" e_stop="42195" e_length="178"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.829">
            <gDNA_intron_boundary i_start="42196" i_stop="42271" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42272" e_stop="42373" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.953" acc_prob="0.989">
            <gDNA_intron_boundary i_start="42374" i_stop="42475" i_length="102"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="42476" e_stop="42547" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.914" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42548" i_stop="42679" i_length="132"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="42680" e_stop="42745" e_length="66"/>
          </exon>
          <intron i_serial="10" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42746" i_stop="42976" i_length="231"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="42977" e_stop="43042" e_length="66"/>
          </exon>
          <intron i_serial="11" don_prob="0.924" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43043" i_stop="44412" i_length="1370"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="44413" e_stop="44499" e_length="87"/>
          </exon>
          <intron i_serial="12" don_prob="0.496" acc_prob="0.483">
            <gDNA_intron_boundary i_start="44500" i_stop="44602" i_length="103"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="44603" e_stop="44719" e_length="117"/>
          </exon>
          <intron i_serial="13" don_prob="0.993" acc_prob="0.981">
            <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="44938" e_stop="45012" e_length="75"/>
          </exon>
          <intron i_serial="14" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="45101" e_stop="45187" e_length="87"/>
          </exon>
          <intron i_serial="15" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631"/>
          </intron>
          <exon e_serial="16" e_score="0.976">
            <gDNA_exon_boundary e_start="45819" e_stop="46359" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39144" stop="39230"/>
              <exon start="39307" stop="39413"/>
              <exon start="39495" stop="39603"/>
              <exon start="40534" stop="40602"/>
              <exon start="40676" stop="40786"/>
              <exon start="41839" stop="41894"/>
              <exon start="42018" stop="42084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39333" stop="39413"/>
              <exon start="39495" stop="39603"/>
              <exon start="40534" stop="40602"/>
              <exon start="40676" stop="40786"/>
              <exon start="41839" stop="41894"/>
              <exon start="42018" stop="42110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39585" stop="39603"/>
              <exon start="40534" stop="40602"/>
              <exon start="40676" stop="40786"/>
              <exon start="41839" stop="41894"/>
              <exon start="42018" stop="42195"/>
              <exon start="42272" stop="42305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40690" stop="40786"/>
              <exon start="41839" stop="41894"/>
              <exon start="42018" stop="42195"/>
              <exon start="42272" stop="42373"/>
              <exon start="42476" stop="42514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42337" stop="42373"/>
              <exon start="42476" stop="42547"/>
              <exon start="42680" stop="42745"/>
              <exon start="42977" stop="43042"/>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42338" stop="42373"/>
              <exon start="42476" stop="42547"/>
              <exon start="42680" stop="42745"/>
              <exon start="42977" stop="43042"/>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="44980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42720" stop="42745"/>
              <exon start="42977" stop="43042"/>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="45964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44429" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="45996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44429" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="45908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44610" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44675" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44688" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270201" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45828" stop="46359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46004" stop="46359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46009" stop="46359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234343" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTTAGGTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTTCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTG : CATGTGCATAATTACAAGGACTTGAGACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAG : GTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAATGGCTGGCTATGCCCCTGATCAAGAGATTGAACTATATGAG : GAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAG : CTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAG : GTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCT : GTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCATCCAAAATAAGGCTCACACCCCATAATTGTTACTCTCAGCAACCTAAACCCCAGCCGATCAAGTACAGAGGTGTTGACACCCTTGGAGATATGCTGGTCCACTACAATCAG : ACATCTGATATTTTGTACTATGAAGTACTGGACATTCCTTTGCCAGAATTGCAAGGTTTAAAAACCTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAA : GTGGTCACTTACACTATCAGACTACCAAAACAATCTACTGTTGGTGATGTAATTAATGATTTAAAGACGAAG : GTAGAGTTGTCAAATCCAGATGCAGAATTAAGATTGCTAGAGGTCTTCTACCACAAAATTTATAAG : ATATTTCCAACAAGTGAGAAGATAGAGAACATAAATGACCAGTACTGGACATTGAGGGCCGAAGAG : ATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATG : CAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAG : TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG : CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG : AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTTTGTCACAA</gDNA_template>
            <first_frame> Q  I  *  V  G  Q  L  R  E  A  S  S  K  V  Q  N  A  E  L  K  L  F  L  E  V  E  L  G  L  :  H  V  H  N  Y  K  D  L  R  H  I  P  P  P  D  K  T  K  D  D  I  M  L  F  F  K  I  Y  D  P  E  K  E  E  L  R :   Y  A  G  R  L  F  V  K  G  T  S  N  P  T  E  I  L  N  K  L  N  E  M  A  G  Y  A  P  D  Q  E  I  E  L  Y  E  :  E  I  K  F  E  P  I  V  L  C  E  P  I  N  K  K  F  A  F  R  T  N  Q  :  L  E  D  G  D  I  V  C  Y  Q  K  S  L  S  P  E  S  R  Q  K  L  R  Y  P  D  V  P  S  F  L  E  Y  V  Q  N  R  Q  :  V  V  H  F  R  Y  L  E  K  L  K  E  D  D  F  C  L  E  L :   S  K  I  N  T  Y  D  E  V  V  E  R  V  A  Q  R  L  G  L  D  D  P  S  K  I  R  L  T  P  H  N  C  Y  S  Q  Q  P  K  P  Q  P  I  K  Y  R  G  V  D  T  L  G  D  M  L  V  H  Y  N  Q  :  T  S  D  I  L  Y  Y  E  V  L  D  I  P  L  P  E  L  Q  G  L  K  T  L  K  V  A  F  H  H  A  T  K  D  E  :  V  V  T  Y  T  I  R  L  P  K  Q  S  T  V  G  D  V  I  N  D  L  K  T  K  :  V  E  L  S  N  P  D  A  E  L  R  L  L  E  V  F  Y  H  K  I  Y  K  :  I  F  P  T  S  E  K  I  E  N  I  N  D  Q  Y  W  T  L  R  A  E  E  :  I  P  E  E  E  K  N  L  G  P  N  A  R  L  I  H  V  Y  H  F  S  K  E  T  A  Q  N  Q  M  :  Q  I  Q  N  F  G  E  P  F  L  L  V  I  H  E  G  E  T  L  V  Q  V  K  V  R  I  Q  K  K  L  Q  V  P  D  E  E  F  A  K  :  W  K  F  A  F  L  S  L  G  R  P  E  Y  L  E  D  S  D  I  L  F  N  R  F  Q  :  R  K  D  V  Y  G  A  W  E  Q  Y  L  G  L  E  H  S  D  N  A  P  K  R  I  N  A  A  Y  Q  :  N  R  P  T  Y  E  K  P  V  K  I  Y  N  *  *  R  R  *  K  *  R  L  *  D  G  S  N  L  *  L  T  I  A  F  V  P  E  V  K  K  P  V  R  V  C  T  G  F  Y  D  F  C  Y  *  S  I  L  Y  S  D  M  D  V  K  F  D  P  N  A  A  S  I  S  Q  Y  L  N  S  S  D  A  *  M  A  H  R  *  L  S  L  C  S  S  V  S  *  A  S  H  T  L  A  K  N  F  E  Q  M  N  E  Y  I  I  Y  C  A  *  F  S  S  D  F  Y  L  R  R  R  V  L  L  S  F  L  P  F  F  G  L  Y  R  C  D  Y  F  W  *  R  F  *  G  F  S  L  *  N  C  V  T  L  S  L  V  I  S  C  Y  C  N  *  P  V  I  K  N  D  K  L  F  V  T  </first_frame>
            <second_frame>  K  F  R  L  D  S  *  G  K  R  Q  V  R  F  R  M  Q  S  *  N  C  S  W  K  W  S  L  D  C :   M  C  I  I  T  R  T  *  D  T  S  L  H  L  T  R  L  K  M  I  L  C  Y  S  S  R  F  M  I  L  R  K  K  S  *   : G  M  L  E  D  S  L  *  R  E  R  V  I  Q  L  K  S  *  T  N  *  M  K  W  L  A  M  P  L  I  K  R  L  N  Y  M  R :   K  *  N  L  N  R  L  S  C  V  N  P  L  T  R  N  L  L  S  E  R  T  S :   L  R  M  V  I  *  Y  A  I  R  N  P  F  L  L  K  V  A  R  S  Y  G  I  Q  M  F  L  L  S  W  S  M  F  K  I  A  R :   W  F  T  S  D  T  *  K  S  *  R  R  M  I  S  V  *  S   : C  Q  R  L  I  H  M  M  K  L  W  K  E  *  L  S  D  L  A  W  M  I  H  P  K  *  G  S  H  P  I  I  V  T  L  S  N  L  N  P  S  R  S  S  T  E  V  L  T  P  L  E  I  C  W  S  T  T  I  R :   H  L  I  F  C  T  M  K  Y  W  T  F  L  C  Q  N  C  K  V  *  K  P  *  K  *  L  F  I  M  L  P  K  M  K :   W  S  L  T  L  S  D  Y  Q  N  N  L  L  L  V  M  *  L  M  I  *  R  R  R :   *  S  C  Q  I  Q  M  Q  N  *  D  C  *  R  S  S  T  T  K  F  I  R :   Y  F  Q  Q  V  R  R  *  R  T  *  M  T  S  T  G  H  *  G  P  K  R :   F  L  K  K  R  R  I  *  A  R  M  L  V  *  F  M  C  I  T  S  V  K  K  L  H  K  T  K  C :   K  F  R  I  L  G  N  L  S  S  W  L  S  M  R  V  R  L  *  F  K  *  R  C  E  Y  R  R  N  C  R  S  Q  M  K  S  L  L  S :   G  N  L  H  S  S  H  L  V  V  L  S  T  L  R  T  R  I  Y  C  S  T  V  S  S :   E  R  M  F  M  V  L  G  S  S  I  L  A  W  N  I  L  T  M  P  L  K  G  L  M  Q  H  I  R :   I  A  R  R  T  R  S  L  L  K  F  T  T  S  N  A  A  E  N  E  D  C  E  M  V  Q  I  Y  D  *  P  L  H  L  S  L  K  L  R  S  Q  F  E  S  V  Q  G  F  M  I  F  V  T  E  A  S  C  I  L  I  W  M  *  S  L  I  L  M  Q  H  P  Y  L  S  T  *  T  Q  V  M  R  K  W  P  I  D  N  S  L  S  V  L  V  *  V  K  R  A  I  H  W  Q  R  I  L  N  K  *  M  N  T  *  Y  I  V  L  D  S  V  L  T  F  I  *  G  E  E  Y  Y  S  V  F  C  H  F  L  G  S  I  D  V  I  I  S  G  R  D  F  E  V  F  P  S  E  I  V  *  P  *  V  W  *  F  L  A  I  V  I  N  Q  *  L  R  M  T  N  C  L  S  Q </second_frame>
            <third_frame>   N  L  G  W  T  V  E  G  S  V  K  *  G  S  E  C  R  A  K  I  V  L  G  S  G  A  W  T   : A  C  A  *  L  Q  G  L  E  T  H  P  S  T  *  Q  D  *  R  *  Y  Y  A  I  L  Q  D  L  *  S  *  E  R  R  A  E  :  V  C  W  K  T  L  C  K  G  N  E  *  S  N  *  N  L  E  Q  T  K  *  N  G  W  L  C  P  *  S  R  D  *  T  I  *   : G  N  K  I  *  T  D  C  L  V  *  T  H  *  Q  E  I  C  F  P  N  E  P   : A  *  G  W  *  Y  S  M  L  S  E  I  P  F  S  *  K  S  P  E  V  T  V  S  R  C  S  F  F  P  G  V  C  S  K  S  P   : G  G  S  L  P  I  L  R  K  V  E  G  G  *  F  L  F  R  A  :  V  K  D  *  Y  I  *  *  S  C  G  K  S  S  S  A  T  W  L  G  *  S  I  Q  N  K  A  H  T  P  *  L  L  L  S  A  T  *  T  P  A  D  Q  V  Q  R  C  *  H  P  W  R  Y  A  G  P  L  Q  S   : D  I  *  Y  F  V  L  *  S  T  G  H  S  F  A  R  I  A  R  F  K  N  L  K  S  S  F  S  S  C  Y  Q  R  *   : S  G  H  L  H  Y  Q  T  T  K  T  I  Y  C  W  *  C  N  *  *  F  K  D  E   : G  R  V  V  K  S  R  C  R  I  K  I  A  R  G  L  L  P  Q  N  L  *   : D  I  S  N  K  *  E  D  R  E  H  K  *  P  V  L  D  I  E  G  R  R   : D  S  *  R  R  E  E  S  R  P  E  C  S  F  D  S  C  V  S  L  Q  *  R  N  C  T  K  P  N   : A  N  S  E  F  W  G  T  F  P  L  G  Y  P  *  G  *  D  F  S  S  S  E  G  A  N  T  E  E  I  A  G  P  R  *  R  V  C  *   : V  E  I  C  I  P  L  T  W  S  S  *  V  P  *  G  L  G  Y  I  V  Q  P  F  P   : A  K  G  C  L  W  C  L  G  A  V  S  W  L  G  T  F  *  Q  C  P  *  K  D  *  C  S  I  S   : E  S  P  D  V  R  E  A  C  *  N  L  Q  L  V  T  P  L  K  M  K  I  V  R  W  F  K  S  M  I  D  H  C  I  C  P  *  S  *  E  A  S  S  S  L  Y  R  V  L  *  F  L  L  L  K  H  L  V  F  *  Y  G  C  E  V  *  S  *  C  S  I  H  I  S  V  L  E  L  K  *  C  V  N  G  P  S  I  T  L  S  L  F  *  C  K  L  S  E  P  Y  I  G  K  E  F  *  T  N  E  *  I  H  N  I  L  C  L  I  Q  F  *  L  L  S  E  E  K  S  T  T  Q  F  S  A  I  F  W  A  L  *  M  *  L  F  L  V  E  I  L  R  F  F  P  L  K  L  C  N  L  K  F  G  N  F  L  L  L  *  L  T  S  N  *  E  *  Q  I  V  C  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39153" stop="39230"/>
                    <exon start="39307" stop="39413"/>
                    <exon start="39495" stop="39603"/>
                    <exon start="40534" stop="40602"/>
                    <exon start="40676" stop="40786"/>
                    <exon start="41839" stop="41894"/>
                    <exon start="42018" stop="42195"/>
                    <exon start="42272" stop="42373"/>
                    <exon start="42476" stop="42547"/>
                    <exon start="42680" stop="42745"/>
                    <exon start="42977" stop="43042"/>
                    <exon start="44413" stop="44499"/>
                    <exon start="44603" stop="44719"/>
                    <exon start="44938" stop="45012"/>
                    <exon start="45101" stop="45187"/>
                    <exon start="45819" stop="45860"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1419</number_coding_nucleotides>
                  <number_encoded_amino_acids>473</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGQLREASSKVQNAELKLFLEVELGLHVHNYKDLRHIPPPDKTKDDIMLFFKIYDPEKEELRYAGRLFVKGTSNPTEILNKLNEMAGYAPDQEIELYEEIKFEPIVLCEPINKKFAFRTNQLEDGDIVCYQKSLSPESRQKLRYPDVPSFLEYVQNRQVVHFRYLEKLKEDDFCLELSKINTYDEVVERVAQRLGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVDTLGDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVTYTIRLPKQSTVGDVINDLKTKVELSNPDAELRLLEVFYHKIYKIFPTSEKIENINDQYWTLRAEEIPEEEKNLGPNARLIHVYHFSKETAQNQMQIQNFGEPFLLVIHEGETLVQVKVRIQKKLQVPDEEFAKWKFAFLSLGRPEYLEDSDILFNRFQRKDVYGAWEQYLGLEHSDNAPKRINAAYQNRPTYEKPVKIYN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="34776" e_stop="34792"/>
            <exon e_start="37205" e_stop="37283"/>
            <exon e_start="37384" e_stop="37530"/>
            <exon e_start="37624" e_stop="37704"/>
            <exon e_start="37803" e_stop="37825"/>
            <exon e_start="42272" e_stop="42373"/>
            <exon e_start="42476" e_stop="42547"/>
            <exon e_start="42680" e_stop="42745"/>
            <exon e_start="42977" e_stop="43042"/>
            <exon e_start="44413" e_stop="44499"/>
            <exon e_start="44603" e_stop="44719"/>
            <exon e_start="44938" e_stop="45012"/>
            <exon e_start="45101" e_stop="45187"/>
            <exon e_start="45819" e_stop="46359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.196" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="0.986"/>
          <exon-intron don_prob="0.965" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.496" acc_prob="0.483" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34776" e_stop="34792" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="34793" i_stop="37204" i_length="2412"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37205" e_stop="37283" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.196">
            <gDNA_intron_boundary i_start="37284" i_stop="37383" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="37384" e_stop="37530" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="37531" i_stop="37623" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37624" e_stop="37704" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.930">
            <gDNA_intron_boundary i_start="37705" i_stop="37802" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="37803" e_stop="37825" e_length="23"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.829">
            <gDNA_intron_boundary i_start="37826" i_stop="42271" i_length="4446"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42272" e_stop="42373" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.953" acc_prob="0.989">
            <gDNA_intron_boundary i_start="42374" i_stop="42475" i_length="102"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42476" e_stop="42547" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.914" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42548" i_stop="42679" i_length="132"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42680" e_stop="42745" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42746" i_stop="42976" i_length="231"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="42977" e_stop="43042" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.924" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43043" i_stop="44412" i_length="1370"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="44413" e_stop="44499" e_length="87"/>
          </exon>
          <intron i_serial="10" don_prob="0.496" acc_prob="0.483">
            <gDNA_intron_boundary i_start="44500" i_stop="44602" i_length="103"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="44603" e_stop="44719" e_length="117"/>
          </exon>
          <intron i_serial="11" don_prob="0.993" acc_prob="0.981">
            <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="44938" e_stop="45012" e_length="75"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="45101" e_stop="45187" e_length="87"/>
          </exon>
          <intron i_serial="13" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631"/>
          </intron>
          <exon e_serial="14" e_score="0.976">
            <gDNA_exon_boundary e_start="45819" e_stop="46359" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34776" stop="34792"/>
              <exon start="37205" stop="37283"/>
              <exon start="37384" stop="37530"/>
              <exon start="37624" stop="37704"/>
              <exon start="37803" stop="37825"/>
              <exon start="42272" stop="42373"/>
              <exon start="42476" stop="42547"/>
              <exon start="42680" stop="42737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42337" stop="42373"/>
              <exon start="42476" stop="42547"/>
              <exon start="42680" stop="42745"/>
              <exon start="42977" stop="43042"/>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42338" stop="42373"/>
              <exon start="42476" stop="42547"/>
              <exon start="42680" stop="42745"/>
              <exon start="42977" stop="43042"/>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="44980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42720" stop="42745"/>
              <exon start="42977" stop="43042"/>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="45964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44429" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="45996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44429" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="45908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44610" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44675" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44688" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270201" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45828" stop="46359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46004" stop="46359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46009" stop="46359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234343" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCTTTCAGATCAATG : GTATAAATTTGATGATGAACGTGTGACTAAAGAAGATGTGAAAAGAGCTCTAGAAGAGCAGTATGGAGGAGAAGAAGAG : TTGCCACAAACAAATCCTGGATTTAATAATACTCCCTTCAAATTTACTAAGTACTCAAATGCTTACATGCTGGTCTATATTCGGGAATGTGACAAAGAGAAAATAATGTGTAATGTTGACGAGAAGGACATTGCTGAGCACCTTAGG : GCAAGGTTAAAGAGAGAACAAGAAGAGAAAGAGCAGAAGAAGAAGGAGAAAGCAGAGGCACACCTTTACACAATTATAAAG : GTTTCTCGTGATGAAGACCTCAG : ACATCTGATATTTTGTACTATGAAGTACTGGACATTCCTTTGCCAGAATTGCAAGGTTTAAAAACCTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAA : GTGGTCACTTACACTATCAGACTACCAAAACAATCTACTGTTGGTGATGTAATTAATGATTTAAAGACGAAG : GTAGAGTTGTCAAATCCAGATGCAGAATTAAGATTGCTAGAGGTCTTCTACCACAAAATTTATAAG : ATATTTCCAACAAGTGAGAAGATAGAGAACATAAATGACCAGTACTGGACATTGAGGGCCGAAGAG : ATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATG : CAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAG : TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG : CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG : AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTTTGTCACAA</gDNA_template>
            <first_frame> T  L  S  D  Q  W :   Y  K  F  D  D  E  R  V  T  K  E  D  V  K  R  A  L  E  E  Q  Y  G  G  E  E  E  :  L  P  Q  T  N  P  G  F  N  N  T  P  F  K  F  T  K  Y  S  N  A  Y  M  L  V  Y  I  R  E  C  D  K  E  K  I  M  C  N  V  D  E  K  D  I  A  E  H  L  R  :  A  R  L  K  R  E  Q  E  E  K  E  Q  K  K  K  E  K  A  E  A  H  L  Y  T  I  I  K  :  V  S  R  D  E  D  L  R :   H  L  I  F  C  T  M  K  Y  W  T  F  L  C  Q  N  C  K  V  *  K  P  *  K  *  L  F  I  M  L  P  K  M  K :   W  S  L  T  L  S  D  Y  Q  N  N  L  L  L  V  M  *  L  M  I  *  R  R  R :   *  S  C  Q  I  Q  M  Q  N  *  D  C  *  R  S  S  T  T  K  F  I  R :   Y  F  Q  Q  V  R  R  *  R  T  *  M  T  S  T  G  H  *  G  P  K  R :   F  L  K  K  R  R  I  *  A  R  M  L  V  *  F  M  C  I  T  S  V  K  K  L  H  K  T  K  C :   K  F  R  I  L  G  N  L  S  S  W  L  S  M  R  V  R  L  *  F  K  *  R  C  E  Y  R  R  N  C  R  S  Q  M  K  S  L  L  S :   G  N  L  H  S  S  H  L  V  V  L  S  T  L  R  T  R  I  Y  C  S  T  V  S  S :   E  R  M  F  M  V  L  G  S  S  I  L  A  W  N  I  L  T  M  P  L  K  G  L  M  Q  H  I  R :   I  A  R  R  T  R  S  L  L  K  F  T  T  S  N  A  A  E  N  E  D  C  E  M  V  Q  I  Y  D  *  P  L  H  L  S  L  K  L  R  S  Q  F  E  S  V  Q  G  F  M  I  F  V  T  E  A  S  C  I  L  I  W  M  *  S  L  I  L  M  Q  H  P  Y  L  S  T  *  T  Q  V  M  R  K  W  P  I  D  N  S  L  S  V  L  V  *  V  K  R  A  I  H  W  Q  R  I  L  N  K  *  M  N  T  *  Y  I  V  L  D  S  V  L  T  F  I  *  G  E  E  Y  Y  S  V  F  C  H  F  L  G  S  I  D  V  I  I  S  G  R  D  F  E  V  F  P  S  E  I  V  *  P  *  V  W  *  F  L  A  I  V  I  N  Q  *  L  R  M  T  N  C  L  S  Q </first_frame>
            <second_frame>  L  F  Q  I  N   : G  I  N  L  M  M  N  V  *  L  K  K  M  *  K  E  L  *  K  S  S  M  E  E  K  K  S :   C  H  K  Q  I  L  D  L  I  I  L  P  S  N  L  L  S  T  Q  M  L  T  C  W  S  I  F  G  N  V  T  K  R  K  *  C  V  M  L  T  R  R  T  L  L  S  T  L  G :   Q  G  *  R  E  N  K  K  R  K  S  R  R  R  R  R  K  Q  R  H  T  F  T  Q  L  *  R :   F  L  V  M  K  T  S   : D  I  *  Y  F  V  L  *  S  T  G  H  S  F  A  R  I  A  R  F  K  N  L  K  S  S  F  S  S  C  Y  Q  R  *   : S  G  H  L  H  Y  Q  T  T  K  T  I  Y  C  W  *  C  N  *  *  F  K  D  E   : G  R  V  V  K  S  R  C  R  I  K  I  A  R  G  L  L  P  Q  N  L  *   : D  I  S  N  K  *  E  D  R  E  H  K  *  P  V  L  D  I  E  G  R  R   : D  S  *  R  R  E  E  S  R  P  E  C  S  F  D  S  C  V  S  L  Q  *  R  N  C  T  K  P  N   : A  N  S  E  F  W  G  T  F  P  L  G  Y  P  *  G  *  D  F  S  S  S  E  G  A  N  T  E  E  I  A  G  P  R  *  R  V  C  *   : V  E  I  C  I  P  L  T  W  S  S  *  V  P  *  G  L  G  Y  I  V  Q  P  F  P   : A  K  G  C  L  W  C  L  G  A  V  S  W  L  G  T  F  *  Q  C  P  *  K  D  *  C  S  I  S   : E  S  P  D  V  R  E  A  C  *  N  L  Q  L  V  T  P  L  K  M  K  I  V  R  W  F  K  S  M  I  D  H  C  I  C  P  *  S  *  E  A  S  S  S  L  Y  R  V  L  *  F  L  L  L  K  H  L  V  F  *  Y  G  C  E  V  *  S  *  C  S  I  H  I  S  V  L  E  L  K  *  C  V  N  G  P  S  I  T  L  S  L  F  *  C  K  L  S  E  P  Y  I  G  K  E  F  *  T  N  E  *  I  H  N  I  L  C  L  I  Q  F  *  L  L  S  E  E  K  S  T  T  Q  F  S  A  I  F  W  A  L  *  M  *  L  F  L  V  E  I  L  R  F  F  P  L  K  L  C  N  L  K  F  G  N  F  L  L  L  *  L  T  S  N  *  E  *  Q  I  V  C  H   </second_frame>
            <third_frame>   S  F  R  S  M  :  V  *  I  *  *  *  T  C  D  *  R  R  C  E  K  S  S  R  R  A  V  W  R  R  R  R   : V  A  T  N  K  S  W  I  *  *  Y  S  L  Q  I  Y  *  V  L  K  C  L  H  A  G  L  Y  S  G  M  *  Q  R  E  N  N  V  *  C  *  R  E  G  H  C  *  A  P  *   : G  K  V  K  E  R  T  R  R  E  R  A  E  E  E  G  E  S  R  G  T  P  L  H  N  Y  K   : G  F  S  *  *  R  P  Q  :  T  S  D  I  L  Y  Y  E  V  L  D  I  P  L  P  E  L  Q  G  L  K  T  L  K  V  A  F  H  H  A  T  K  D  E  :  V  V  T  Y  T  I  R  L  P  K  Q  S  T  V  G  D  V  I  N  D  L  K  T  K  :  V  E  L  S  N  P  D  A  E  L  R  L  L  E  V  F  Y  H  K  I  Y  K  :  I  F  P  T  S  E  K  I  E  N  I  N  D  Q  Y  W  T  L  R  A  E  E  :  I  P  E  E  E  K  N  L  G  P  N  A  R  L  I  H  V  Y  H  F  S  K  E  T  A  Q  N  Q  M  :  Q  I  Q  N  F  G  E  P  F  L  L  V  I  H  E  G  E  T  L  V  Q  V  K  V  R  I  Q  K  K  L  Q  V  P  D  E  E  F  A  K  :  W  K  F  A  F  L  S  L  G  R  P  E  Y  L  E  D  S  D  I  L  F  N  R  F  Q  :  R  K  D  V  Y  G  A  W  E  Q  Y  L  G  L  E  H  S  D  N  A  P  K  R  I  N  A  A  Y  Q  :  N  R  P  T  Y  E  K  P  V  K  I  Y  N  *  *  R  R  *  K  *  R  L  *  D  G  S  N  L  *  L  T  I  A  F  V  P  E  V  K  K  P  V  R  V  C  T  G  F  Y  D  F  C  Y  *  S  I  L  Y  S  D  M  D  V  K  F  D  P  N  A  A  S  I  S  Q  Y  L  N  S  S  D  A  *  M  A  H  R  *  L  S  L  C  S  S  V  S  *  A  S  H  T  L  A  K  N  F  E  Q  M  N  E  Y  I  I  Y  C  A  *  F  S  S  D  F  Y  L  R  R  R  V  L  L  S  F  L  P  F  F  G  L  Y  R  C  D  Y  F  W  *  R  F  *  G  F  S  L  *  N  C  V  T  L  S  L  V  I  S  C  Y  C  N  *  P  V  I  K  N  D  K  L  F  V  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37817" stop="37825"/>
                    <exon start="42272" stop="42373"/>
                    <exon start="42476" stop="42547"/>
                    <exon start="42680" stop="42745"/>
                    <exon start="42977" stop="43042"/>
                    <exon start="44413" stop="44499"/>
                    <exon start="44603" stop="44719"/>
                    <exon start="44938" stop="45012"/>
                    <exon start="45101" stop="45187"/>
                    <exon start="45819" stop="45860"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVTYTIRLPKQSTVGDVINDLKTKVELSNPDAELRLLEVFYHKIYKIFPTSEKIENINDQYWTLRAEEIPEEEKNLGPNARLIHVYHFSKETAQNQMQIQNFGEPFLLVIHEGETLVQVKVRIQKKLQVPDEEFAKWKFAFLSLGRPEYLEDSDILFNRFQRKDVYGAWEQYLGLEHSDNAPKRINAAYQNRPTYEKPVKIYN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="46803" e_stop="47107"/>
            <exon e_start="47320" e_stop="47356"/>
            <exon e_start="48754" e_stop="48837"/>
            <exon e_start="49203" e_stop="49550"/>
            <exon e_start="49656" e_stop="49687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.990"/>
          <exon-intron don_prob="0.969" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="46803" e_stop="47107" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47108" i_stop="47319" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47320" e_stop="47356" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47357" i_stop="48753" i_length="1397"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48754" e_stop="48837" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.860" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48838" i_stop="49202" i_length="365"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49203" e_stop="49550" e_length="348"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49551" i_stop="49655" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="0.750">
            <gDNA_exon_boundary e_start="49656" e_stop="49687" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46803" stop="47107"/>
              <exon start="47320" stop="47356"/>
              <exon start="48754" stop="48837"/>
              <exon start="49203" stop="49549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48759" stop="48837"/>
              <exon start="49203" stop="49550"/>
              <exon start="49656" stop="49687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATGGCAACAATACTCTCTCGCTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCTCCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAG : GGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATG : GTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAG : GATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTCTTCACACAAACTTTACAAGTAATTGTTTTGCCAATTGACTTA : AAAATGGAACAAAAAACCAAAAAAAAAAACCA</gDNA_template>
            <first_frame> Q  W  Q  Q  Y  S  L  A  H  H  S  I  P  S  I  L  S  L  L  Q  Q  Q  F  V  H  P  Y  A  L  L  L  A  V  L  L  F  Q  Q  S  L  N  S  Q  S  C  Q  H  H  V  F  P  N  F  T  N  F  S  L  S  P  Q  I  I  I  I  P  F  C  S  L  L  V  L  I  L  P  L  W  I  L  K  L  F  L  P  L  S  V  F  *  L  P  L  L  S  P  S  F  L  A  S  R :   E  I  Q  F  L  V  I  G  V  L  G  M  :  V  G  Q  S  A  C  F  A  T  M  V  R  *  R  K  K  Q  D  *  *  T  A  K  F  A  R  V  Q  :  D  *  Y  S  A  R  N  V  L  V  L  D  T  Q  K  G  Y  N  I  Y  Y  L  Y  S  F  F  L  *  L  L  T  C  V  L  R  L  N  H  T  Y  K  L  T  Y  E  A  I  S  F  W  L  N  Y  I  F  F  L  K  K  E  G  L  L  V  L  L  I  P  R  L  L  V  D  Y  I  C  L  S  T  F  N  L  *  S  I  E  C  Y  S  S  L  Q  Y  D  V  F  C  Q  I  A  F  V  F  T  Q  T  L  Q  V  I  V  L  P  I  D  L  :  K  M  E  Q  K  T  K  K  K  N   </first_frame>
            <second_frame>  N  G  N  N  T  L  S  L  I  T  L  S  L  P  F  S  L  F  F  N  N  N  L  F  I  L  M  P  F  Y  L  L  S  F  F  S  N  K  A  *  I  P  S  L  V  N  I  M  F  F  P  I  S  P  I  F  P  F  P  H  K  S  S  S  S  H  F  A  L  C  W  F  *  F  S  P  F  G  Y  S  N  F  S  C  H  Y  Q  C  F  N  C  H  C  S  L  P  L  S  W  P  Q   : G  R  S  S  S  L  *  *  V  C  W  E  W :   W  D  K  V  R  V  L  Q  R  W  *  D  E  E  R  N  R  I  S  R  L  Q  S  L  Q  G  C  R :   I  N  T  L  Q  E  M  C  W  F  W  I  L  K  K  A  I  T  Y  T  T  C  T  L  F  S  S  S  Y  *  L  V  F  *  G  *  I  T  H  T  S  S  H  M  R  L  S  H  F  G  *  I  I  Y  F  S  *  K  K  K  G  Y  *  Y  F  *  S  L  D  Y  W  *  I  I  S  V  *  A  H  L  T  F  S  Q  L  N  V  I  A  H  Y  N  M  M  Y  F  V  K  *  H  L  S  S  H  K  L  Y  K  *  L  F  C  Q  L  T  * :   K  W  N  K  K  P  K  K  K  T  </second_frame>
            <third_frame>   M  A  T  I  L  S  R  S  S  L  Y  P  F  H  S  L  S  S  S  T  T  I  C  S  S  L  C  P  F  T  C  C  P  S  F  P  T  K  L  E  F  P  V  L  S  T  S  C  F  S  Q  F  H  Q  F  F  P  F  P  T  N  H  H  H  P  I  L  L  F  V  G  F  D  S  P  P  L  D  T  Q  T  F  L  A  T  I  S  V  L  T  A  I  A  L  S  L  F  L  G  L  K  :  G  D  P  V  P  C  D  R  C  A  G  N   : G  G  T  K  C  V  F  C  N  D  G  K  M  K  K  E  T  G  L  V  D  C  K  V  C  K  G  A   : G  L  I  L  C  K  K  C  A  G  S  G  Y  S  K  R  L  *  H  I  L  L  V  L  F  F  P  L  A  I  D  L  C  S  E  A  K  S  H  I  Q  A  H  I  *  G  Y  L  I  L  V  K  L  Y  I  F  L  E  K  R  R  V  T  S  T  F  N  P  S  I  I  G  R  L  Y  L  S  K  H  I  *  P  L  V  N  *  M  L  *  L  I  T  I  *  C  I  L  S  N  S  I  C  L  H  T  N  F  T  S  N  C  F  A  N  *  L   : K  N  G  T  K  N  Q  K  K  K  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46805" stop="47107"/>
                    <exon start="47320" stop="47356"/>
                    <exon start="48754" stop="48837"/>
                    <exon start="49203" stop="49255"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATILSRSSLYPFHSLSSSTTICSSLCPFTCCPSFPTKLEFPVLSTSCFSQFHQFFPFPTNHHHPILLFVGFDSPPLDTQTFLATISVLTAIALSLFLGLKGDPVPCDRCAGNGGTKCVFCNDGKMKKETGLVDCKVCKGAGLILCKKCAGSGYSKRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="46803" e_stop="47107"/>
            <exon e_start="47320" e_stop="47356"/>
            <exon e_start="48754" e_stop="48837"/>
            <exon e_start="49203" e_stop="49549"/>
            <exon e_start="49654" e_stop="49685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.990"/>
          <exon-intron don_prob="0.969" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="46803" e_stop="47107" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47108" i_stop="47319" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47320" e_stop="47356" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47357" i_stop="48753" i_length="1397"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48754" e_stop="48837" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.860" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48838" i_stop="49202" i_length="365"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="49203" e_stop="49549" e_length="347"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49550" i_stop="49653" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="0.750">
            <gDNA_exon_boundary e_start="49654" e_stop="49685" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46803" stop="47107"/>
              <exon start="47320" stop="47356"/>
              <exon start="48754" stop="48837"/>
              <exon start="49203" stop="49549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48758" stop="48837"/>
              <exon start="49203" stop="49549"/>
              <exon start="49654" stop="49685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376618" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATGGCAACAATACTCTCTCGCTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCTCCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAG : GGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATG : GTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAG : GATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTCTTCACACAAACTTTACAAGTAATTGTTTTGCCAATTGACTT : TCAAAATGGAACAAAAAACCAAAAAAAAAAAC</gDNA_template>
            <first_frame> Q  W  Q  Q  Y  S  L  A  H  H  S  I  P  S  I  L  S  L  L  Q  Q  Q  F  V  H  P  Y  A  L  L  L  A  V  L  L  F  Q  Q  S  L  N  S  Q  S  C  Q  H  H  V  F  P  N  F  T  N  F  S  L  S  P  Q  I  I  I  I  P  F  C  S  L  L  V  L  I  L  P  L  W  I  L  K  L  F  L  P  L  S  V  F  *  L  P  L  L  S  P  S  F  L  A  S  R :   E  I  Q  F  L  V  I  G  V  L  G  M  :  V  G  Q  S  A  C  F  A  T  M  V  R  *  R  K  K  Q  D  *  *  T  A  K  F  A  R  V  Q  :  D  *  Y  S  A  R  N  V  L  V  L  D  T  Q  K  G  Y  N  I  Y  Y  L  Y  S  F  F  L  *  L  L  T  C  V  L  R  L  N  H  T  Y  K  L  T  Y  E  A  I  S  F  W  L  N  Y  I  F  F  L  K  K  E  G  L  L  V  L  L  I  P  R  L  L  V  D  Y  I  C  L  S  T  F  N  L  *  S  I  E  C  Y  S  S  L  Q  Y  D  V  F  C  Q  I  A  F  V  F  T  Q  T  L  Q  V  I  V  L  P  I  D  F :   Q  N  G  T  K  N  Q  K  K  K  </first_frame>
            <second_frame>  N  G  N  N  T  L  S  L  I  T  L  S  L  P  F  S  L  F  F  N  N  N  L  F  I  L  M  P  F  Y  L  L  S  F  F  S  N  K  A  *  I  P  S  L  V  N  I  M  F  F  P  I  S  P  I  F  P  F  P  H  K  S  S  S  S  H  F  A  L  C  W  F  *  F  S  P  F  G  Y  S  N  F  S  C  H  Y  Q  C  F  N  C  H  C  S  L  P  L  S  W  P  Q   : G  R  S  S  S  L  *  *  V  C  W  E  W :   W  D  K  V  R  V  L  Q  R  W  *  D  E  E  R  N  R  I  S  R  L  Q  S  L  Q  G  C  R :   I  N  T  L  Q  E  M  C  W  F  W  I  L  K  K  A  I  T  Y  T  T  C  T  L  F  S  S  S  Y  *  L  V  F  *  G  *  I  T  H  T  S  S  H  M  R  L  S  H  F  G  *  I  I  Y  F  S  *  K  K  K  G  Y  *  Y  F  *  S  L  D  Y  W  *  I  I  S  V  *  A  H  L  T  F  S  Q  L  N  V  I  A  H  Y  N  M  M  Y  F  V  K  *  H  L  S  S  H  K  L  Y  K  *  L  F  C  Q  L  T   : F  K  M  E  Q  K  T  K  K  K  N </second_frame>
            <third_frame>   M  A  T  I  L  S  R  S  S  L  Y  P  F  H  S  L  S  S  S  T  T  I  C  S  S  L  C  P  F  T  C  C  P  S  F  P  T  K  L  E  F  P  V  L  S  T  S  C  F  S  Q  F  H  Q  F  F  P  F  P  T  N  H  H  H  P  I  L  L  F  V  G  F  D  S  P  P  L  D  T  Q  T  F  L  A  T  I  S  V  L  T  A  I  A  L  S  L  F  L  G  L  K  :  G  D  P  V  P  C  D  R  C  A  G  N   : G  G  T  K  C  V  F  C  N  D  G  K  M  K  K  E  T  G  L  V  D  C  K  V  C  K  G  A   : G  L  I  L  C  K  K  C  A  G  S  G  Y  S  K  R  L  *  H  I  L  L  V  L  F  F  P  L  A  I  D  L  C  S  E  A  K  S  H  I  Q  A  H  I  *  G  Y  L  I  L  V  K  L  Y  I  F  L  E  K  R  R  V  T  S  T  F  N  P  S  I  I  G  R  L  Y  L  S  K  H  I  *  P  L  V  N  *  M  L  *  L  I  T  I  *  C  I  L  S  N  S  I  C  L  H  T  N  F  T  S  N  C  F  A  N  *  L  :  S  K  W  N  K  K  P  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46805" stop="47107"/>
                    <exon start="47320" stop="47356"/>
                    <exon start="48754" stop="48837"/>
                    <exon start="49203" stop="49255"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATILSRSSLYPFHSLSSSTTICSSLCPFTCCPSFPTKLEFPVLSTSCFSQFHQFFPFPTNHHHPILLFVGFDSPPLDTQTFLATISVLTAIALSLFLGLKGDPVPCDRCAGNGGTKCVFCNDGKMKKETGLVDCKVCKGAGLILCKKCAGSGYSKRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="48754" e_stop="48837"/>
            <exon e_start="49203" e_stop="49479"/>
            <exon e_start="49666" e_stop="49682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.860" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.989"/>
          <exon-only e_score="0.882"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48754" e_stop="48837" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.860" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48838" i_stop="49202" i_length="365"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="49203" e_stop="49479" e_length="277"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49480" i_stop="49665" i_length="186"/>
          </intron>
          <exon e_serial="3" e_score="0.882">
            <gDNA_exon_boundary e_start="49666" e_stop="49682" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48754" stop="48837"/>
              <exon start="49203" stop="49479"/>
              <exon start="49666" stop="49682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218410" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAG : GATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAAT : AAAAAACCAAAAAAAAA</gDNA_template>
            <first_frame> V  G  Q  S  A  C  F  A  T  M  V  R  *  R  K  K  Q  D  *  *  T  A  K  F  A  R  V  Q  :  D  *  Y  S  A  R  N  V  L  V  L  D  T  Q  K  G  Y  N  I  Y  Y  L  Y  S  F  F  L  *  L  L  T  C  V  L  R  L  N  H  T  Y  K  L  T  Y  E  A  I  S  F  W  L  N  Y  I  F  F  L  K  K  E  G  L  L  V  L  L  I  P  R  L  L  V  D  Y  I  C  L  S  T  F  N  L  *  S  I  E  C  Y  S  S  L  Q   : *  K  T  K  K  K </first_frame>
            <second_frame>  W  D  K  V  R  V  L  Q  R  W  *  D  E  E  R  N  R  I  S  R  L  Q  S  L  Q  G  C  R :   I  N  T  L  Q  E  M  C  W  F  W  I  L  K  K  A  I  T  Y  T  T  C  T  L  F  S  S  S  Y  *  L  V  F  *  G  *  I  T  H  T  S  S  H  M  R  L  S  H  F  G  *  I  I  Y  F  S  *  K  K  K  G  Y  *  Y  F  *  S  L  D  Y  W  *  I  I  S  V  *  A  H  L  T  F  S  Q  L  N  V  I  A  H  Y  N  :  K  K  P  K  K   </second_frame>
            <third_frame>   G  T  K  C  V  F  C  N  D  G  K  M  K  K  E  T  G  L  V  D  C  K  V  C  K  G  A   : G  L  I  L  C  K  K  C  A  G  S  G  Y  S  K  R  L  *  H  I  L  L  V  L  F  F  P  L  A  I  D  L  C  S  E  A  K  S  H  I  Q  A  H  I  *  G  Y  L  I  L  V  K  L  Y  I  F  L  E  K  R  R  V  T  S  T  F  N  P  S  I  I  G  R  L  Y  L  S  K  H  I  *  P  L  V  N  *  M  L  *  L  I  T  I :   K  N  Q  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0323E19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="46818" e_stop="47107"/>
            <exon e_start="47320" e_stop="47356"/>
            <exon e_start="48754" e_stop="49321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="0.969" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="46818" e_stop="47107" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47108" i_stop="47319" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47320" e_stop="47356" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47357" i_stop="48753" i_length="1397"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="48754" e_stop="49321" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46818" stop="47107"/>
              <exon start="47320" stop="47356"/>
              <exon start="48754" stop="49321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTCGCTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCTCCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAG : GGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATG : GTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAGGTACTATTCAGCTGCAATTTCTTCGCGCTACCAATTTTTAGTAATCGTTCAGTTTGGAATACTTATAGCATGTCTAACAGATTTAGATGAACTCTCGAATTTGGATTTTAGATCATATGAATGACATGAAAGAACTTAGATAATCCTTTCCCATCTGTCAGGCTTGTATATACCCACGCTCCTGTTTATTATTTTCTAGAACCTCAGGAACTATGTTTCCGACTCACCCTTGGCTTTCTCCTTAGGTTTGTCAAGCCAACCTGACATGTTCAGATTGGAACACCTCGACGATGATGTAGTCAAACTAACATTTTTTCTCGAGTAGAATGCATCGAACGATCATTATAATAATTTTTTTATTGCAGGATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATA</gDNA_template>
            <first_frame> S  L  A  H  H  S  I  P  S  I  L  S  L  L  Q  Q  Q  F  V  H  P  Y  A  L  L  L  A  V  L  L  F  Q  Q  S  L  N  S  Q  S  C  Q  H  H  V  F  P  N  F  T  N  F  S  L  S  P  Q  I  I  I  I  P  F  C  S  L  L  V  L  I  L  P  L  W  I  L  K  L  F  L  P  L  S  V  F  *  L  P  L  L  S  P  S  F  L  A  S  R :   E  I  Q  F  L  V  I  G  V  L  G  M  :  V  G  Q  S  A  C  F  A  T  M  V  R  *  R  K  K  Q  D  *  *  T  A  K  F  A  R  V  Q  V  L  F  S  C  N  F  F  A  L  P  I  F  S  N  R  S  V  W  N  T  Y  S  M  S  N  R  F  R  *  T  L  E  F  G  F  *  I  I  *  M  T  *  K  N  L  D  N  P  F  P  S  V  R  L  V  Y  T  H  A  P  V  Y  Y  F  L  E  P  Q  E  L  C  F  R  L  T  L  G  F  L  L  R  F  V  K  P  T  *  H  V  Q  I  G  T  P  R  R  *  C  S  Q  T  N  I  F  S  R  V  E  C  I  E  R  S  L  *  *  F  F  Y  C  R  I  N  T  L  Q  E  M  C  W  F  W  I  L  K  K  A  I  T  Y  T  T  C  T  L  F  S  S  S  Y  *  L  V  F  *  G  *  I  T  H  </first_frame>
            <second_frame>  L  S  L  I  T  L  S  L  P  F  S  L  F  F  N  N  N  L  F  I  L  M  P  F  Y  L  L  S  F  F  S  N  K  A  *  I  P  S  L  V  N  I  M  F  F  P  I  S  P  I  F  P  F  P  H  K  S  S  S  S  H  F  A  L  C  W  F  *  F  S  P  F  G  Y  S  N  F  S  C  H  Y  Q  C  F  N  C  H  C  S  L  P  L  S  W  P  Q   : G  R  S  S  S  L  *  *  V  C  W  E  W :   W  D  K  V  R  V  L  Q  R  W  *  D  E  E  R  N  R  I  S  R  L  Q  S  L  Q  G  C  R  Y  Y  S  A  A  I  S  S  R  Y  Q  F  L  V  I  V  Q  F  G  I  L  I  A  C  L  T  D  L  D  E  L  S  N  L  D  F  R  S  Y  E  *  H  E  R  T  *  I  I  L  S  H  L  S  G  L  Y  I  P  T  L  L  F  I  I  F  *  N  L  R  N  Y  V  S  D  S  P  L  A  F  S  L  G  L  S  S  Q  P  D  M  F  R  L  E  H  L  D  D  D  V  V  K  L  T  F  F  L  E  *  N  A  S  N  D  H  Y  N  N  F  F  I  A  G  L  I  L  C  K  K  C  A  G  S  G  Y  S  K  R  L  *  H  I  L  L  V  L  F  F  P  L  A  I  D  L  C  S  E  A  K  S  H  I </second_frame>
            <third_frame>   S  R  S  S  L  Y  P  F  H  S  L  S  S  S  T  T  I  C  S  S  L  C  P  F  T  C  C  P  S  F  P  T  K  L  E  F  P  V  L  S  T  S  C  F  S  Q  F  H  Q  F  F  P  F  P  T  N  H  H  H  P  I  L  L  F  V  G  F  D  S  P  P  L  D  T  Q  T  F  L  A  T  I  S  V  L  T  A  I  A  L  S  L  F  L  G  L  K  :  G  D  P  V  P  C  D  R  C  A  G  N   : G  G  T  K  C  V  F  C  N  D  G  K  M  K  K  E  T  G  L  V  D  C  K  V  C  K  G  A  G  T  I  Q  L  Q  F  L  R  A  T  N  F  *  *  S  F  S  L  E  Y  L  *  H  V  *  Q  I  *  M  N  S  R  I  W  I  L  D  H  M  N  D  M  K  E  L  R  *  S  F  P  I  C  Q  A  C  I  Y  P  R  S  C  L  L  F  S  R  T  S  G  T  M  F  P  T  H  P  W  L  S  P  *  V  C  Q  A  N  L  T  C  S  D  W  N  T  S  T  M  M  *  S  N  *  H  F  F  S  S  R  M  H  R  T  I  I  I  I  I  F  L  L  Q  D  *  Y  S  A  R  N  V  L  V  L  D  T  Q  K  G  Y  N  I  Y  Y  L  Y  S  F  F  L  *  L  L  T  C  V  L  R  L  N  H  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46820" stop="47107"/>
                    <exon start="47320" stop="47356"/>
                    <exon start="48754" stop="48878"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRSSLYPFHSLSSSTTICSSLCPFTCCPSFPTKLEFPVLSTSCFSQFHQFFPFPTNHHHPILLFVGFDSPPLDTQTFLATISVLTAIALSLFLGLKGDPVPCDRCAGNGGTKCVFCNDGKMKKETGLVDCKVCKGAGTIQLQFLRATNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="61550" PGL_stop="62894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61550" e_stop="62894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="61550" e_stop="62894" e_length="1345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61550" stop="62271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61550" stop="62234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61551" stop="62006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61843" stop="62402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61843" stop="62292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62255" stop="62871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62595" stop="62894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTACTTAATGAACTTGCTGAGGATCTGAAGCAGGATGTTGAAATGGAAGATAAGTCATCAGATATTTTGCATAATCCTATTTCAGAGGACCTAAGTTTGTTGAGGATGAAGCTTGAAGGAGCGCAGGAAAAGCTTCTAAAATCTGCCAATACCATAAGTATGTTTGGTTCATTAGAGAGAGCAATTGTTGAGGTTGATGAACTTGCAGAAGAAATTGAAGGACTCGAAAAGAGCATTGAAGTGAAAAAACAAGGATACACATCCTTCAAGCTTCAGTCGTCACAAATGCTTGAAAAGAAAGTTTTGCTTGATAATAAGCTATCAGCACTAAGATACTCCGTATCAAGCTTTTCCTCATCAGTTGGTTACTTCGAACAACGGGAAGCTCAAACAAGAGCAAGATTGAATGCTTCATCTACTTGTCTCAACCAAAAGAAAGCAAAATTGACTCATCTTCAAGCATCTAAGGTTGAACTCCTGGAAGCACAGATGCAGGCTAAACAGTCAGAATCAGAACTAAGAAACATCCTAGCAGAATCAAAATCAAGATTGGAAGACGAGAATCAAAGGCTGGAAAGTGACAGAGTTCTCTTTGCCATAGATAACATTGATAAACCCGATATCCAATTGCCAGAAAGGAGTTGGCAGTTGAGTGGCAAAGCTACTGAATTACTCAAGTCTGAGGAAGAAAAAACAAAGATACAGAATCAAATGAAGCAGATTAGGGAAAATTTGGGGATAAAGAAGAAGGAAATCGAAGACTTAAACGAAAAAAGACTGAATTCAGAGAAAGATATTGAGGCTACTGAAAAGGAGATAGAGAATATTTCGCAATCTGTAAAGGAGATGGGCAACAAGCTTCAAAGGGTCATCGGGGAGAAGCAGATGATCTTTGAAATGAAAGAGAACGGGAAGAAAGAGTTTGAGAACATGATTCTTGAGTATCACGAGAGTATGTTTGCAGCATCGTTGAAGGAGGAAGAGTTGAAGATTTTGGACGAAGAATTGCAGTTGGAGATGAGTAAAATAGAAGATTTGCAAAGAGAAAAAGCTCTTGCCACAAGCAGAAAAACTCAGTTGCTGAATGCATTATCGTGCCAATCATACTCTTTGTCTGACAAGGTAGAGGAGGATCTACATGACATACGAAGGTCAGTACTAGAGCTGAACTCGTTGCTTGGAAATTGATTGTTTGACTGACAGTTAATTGCCTGTTTAACTGTCAAGTATAAAACATCTTCTCTAAAAGAAACTTCTCTCTGTTGCATTGCTGCTGCCTTAATGTATTGTCGATATAAAATTCTCCTTACGCAAATGGTGTGATGTATTACAAAACCATATTA</gDNA_template>
            <first_frame> L  Y  L  M  N  L  L  R  I  *  S  R  M  L  K  W  K  I  S  H  Q  I  F  C  I  I  L  F  Q  R  T  *  V  C  *  G  *  S  L  K  E  R  R  K  S  F  *  N  L  P  I  P  *  V  C  L  V  H  *  R  E  Q  L  L  R  L  M  N  L  Q  K  K  L  K  D  S  K  R  A  L  K  *  K  N  K  D  T  H  P  S  S  F  S  R  H  K  C  L  K  R  K  F  C  L  I  I  S  Y  Q  H  *  D  T  P  Y  Q  A  F  P  H  Q  L  V  T  S  N  N  G  K  L  K  Q  E  Q  D  *  M  L  H  L  L  V  S  T  K  R  K  Q  N  *  L  I  F  K  H  L  R  L  N  S  W  K  H  R  C  R  L  N  S  Q  N  Q  N  *  E  T  S  *  Q  N  Q  N  Q  D  W  K  T  R  I  K  G  W  K  V  T  E  F  S  L  P  *  I  T  L  I  N  P  I  S  N  C  Q  K  G  V  G  S  *  V  A  K  L  L  N  Y  S  S  L  R  K  K  K  Q  R  Y  R  I  K  *  S  R  L  G  K  I  W  G  *  R  R  R  K  S  K  T  *  T  K  K  D  *  I  Q  R  K  I  L  R  L  L  K  R  R  *  R  I  F  R  N  L  *  R  R  W  A  T  S  F  K  G  S  S  G  R  S  R  *  S  L  K  *  K  R  T  G  R  K  S  L  R  T  *  F  L  S  I  T  R  V  C  L  Q  H  R  *  R  R  K  S  *  R  F  W  T  K  N  C  S  W  R  *  V  K  *  K  I  C  K  E  K  K  L  L  P  Q  A  E  K  L  S  C  *  M  H  Y  R  A  N  H  T  L  C  L  T  R  *  R  R  I  Y  M  T  Y  E  G  Q  Y  *  S  *  T  R  C  L  E  I  D  C  L  T  D  S  *  L  P  V  *  L  S  S  I  K  H  L  L  *  K  K  L  L  S  V  A  L  L  L  P  *  C  I  V  D  I  K  F  S  L  R  K  W  C  D  V  L  Q  N  H  I  </first_frame>
            <second_frame>  C  T  *  *  T  C  *  G  S  E  A  G  C  *  N  G  R  *  V  I  R  Y  F  A  *  S  Y  F  R  G  P  K  F  V  E  D  E  A  *  R  S  A  G  K  A  S  K  I  C  Q  Y  H  K  Y  V  W  F  I  R  E  S  N  C  *  G  *  *  T  C  R  R  N  *  R  T  R  K  E  H  *  S  E  K  T  R  I  H  I  L  Q  A  S  V  V  T  N  A  *  K  E  S  F  A  *  *  *  A  I  S  T  K  I  L  R  I  K  L  F  L  I  S  W  L  L  R  T  T  G  S  S  N  K  S  K  I  E  C  F  I  Y  L  S  Q  P  K  E  S  K  I  D  S  S  S  S  I  *  G  *  T  P  G  S  T  D  A  G  *  T  V  R  I  R  T  K  K  H  P  S  R  I  K  I  K  I  G  R  R  E  S  K  A  G  K  *  Q  S  S  L  C  H  R  *  H  *  *  T  R  Y  P  I  A  R  K  E  L  A  V  E  W  Q  S  Y  *  I  T  Q  V  *  G  R  K  N  K  D  T  E  S  N  E  A  D  *  G  K  F  G  D  K  E  E  G  N  R  R  L  K  R  K  K  T  E  F  R  E  R  Y  *  G  Y  *  K  G  D  R  E  Y  F  A  I  C  K  G  D  G  Q  Q  A  S  K  G  H  R  G  E  A  D  D  L  *  N  E  R  E  R  E  E  R  V  *  E  H  D  S  *  V  S  R  E  Y  V  C  S  I  V  E  G  G  R  V  E  D  F  G  R  R  I  A  V  G  D  E  *  N  R  R  F  A  K  R  K  S  S  C  H  K  Q  K  N  S  V  A  E  C  I  I  V  P  I  I  L  F  V  *  Q  G  R  G  G  S  T  *  H  T  K  V  S  T  R  A  E  L  V  A  W  K  L  I  V  *  L  T  V  N  C  L  F  N  C  Q  V  *  N  I  F  S  K  R  N  F  S  L  L  H  C  C  C  L  N  V  L  S  I  *  N  S  P  Y  A  N  G  V  M  Y  Y  K  T  I  L </second_frame>
            <third_frame>   V  L  N  E  L  A  E  D  L  K  Q  D  V  E  M  E  D  K  S  S  D  I  L  H  N  P  I  S  E  D  L  S  L  L  R  M  K  L  E  G  A  Q  E  K  L  L  K  S  A  N  T  I  S  M  F  G  S  L  E  R  A  I  V  E  V  D  E  L  A  E  E  I  E  G  L  E  K  S  I  E  V  K  K  Q  G  Y  T  S  F  K  L  Q  S  S  Q  M  L  E  K  K  V  L  L  D  N  K  L  S  A  L  R  Y  S  V  S  S  F  S  S  S  V  G  Y  F  E  Q  R  E  A  Q  T  R  A  R  L  N  A  S  S  T  C  L  N  Q  K  K  A  K  L  T  H  L  Q  A  S  K  V  E  L  L  E  A  Q  M  Q  A  K  Q  S  E  S  E  L  R  N  I  L  A  E  S  K  S  R  L  E  D  E  N  Q  R  L  E  S  D  R  V  L  F  A  I  D  N  I  D  K  P  D  I  Q  L  P  E  R  S  W  Q  L  S  G  K  A  T  E  L  L  K  S  E  E  E  K  T  K  I  Q  N  Q  M  K  Q  I  R  E  N  L  G  I  K  K  K  E  I  E  D  L  N  E  K  R  L  N  S  E  K  D  I  E  A  T  E  K  E  I  E  N  I  S  Q  S  V  K  E  M  G  N  K  L  Q  R  V  I  G  E  K  Q  M  I  F  E  M  K  E  N  G  K  K  E  F  E  N  M  I  L  E  Y  H  E  S  M  F  A  A  S  L  K  E  E  E  L  K  I  L  D  E  E  L  Q  L  E  M  S  K  I  E  D  L  Q  R  E  K  A  L  A  T  S  R  K  T  Q  L  L  N  A  L  S  C  Q  S  Y  S  L  S  D  K  V  E  E  D  L  H  D  I  R  R  S  V  L  E  L  N  S  L  L  G  N  *  L  F  D  *  Q  L  I  A  C  L  T  V  K  Y  K  T  S  S  L  K  E  T  S  L  C  C  I  A  A  A  L  M  Y  C  R  Y  K  I  L  L  T  Q  M  V  *  C  I  T  K  P  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61552" stop="62739"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1185</number_coding_nucleotides>
                  <number_encoded_amino_acids>395</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLNELAEDLKQDVEMEDKSSDILHNPISEDLSLLRMKLEGAQEKLLKSANTISMFGSLERAIVEVDELAEEIEGLEKSIEVKKQGYTSFKLQSSQMLEKKVLLDNKLSALRYSVSSFSSSVGYFEQREAQTRARLNASSTCLNQKKAKLTHLQASKVELLEAQMQAKQSESELRNILAESKSRLEDENQRLESDRVLFAIDNIDKPDIQLPERSWQLSGKATELLKSEEEKTKIQNQMKQIRENLGIKKKEIEDLNEKRLNSEKDIEATEKEIENISQSVKEMGNKLQRVIGEKQMIFEMKENGKKEFENMILEYHESMFAASLKEEELKILDEELQLEMSKIEDLQREKALATSRKTQLLNALSCQSYSLSDKVEEDLHDIRRSVLELNSLLGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="63971" PGL_stop="63381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63971" e_stop="63381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63971" e_stop="63381" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63971" stop="63381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63971" stop="63405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63971" stop="63596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGTACTATACGGCCAAACACTTATAATTTCCAAAGTTTTCTTTGTTGATTTCAAAGTTCAACCCTTTTCTCACTTAACTATATTCTACTTATGTGTATGGTATCATCAGTGTCTGTTTCCACAGCTGAGAAAGAGTCTTTTTTCTCGAGATTACGAAATATGTTTCATTTCAGAAGGAATGAAGATGAGAAGAAGACAACGACAACAACAACAACGAGAGCTGCTGCTGCTGCAGCAACTACTACTACTAACTGTGTTCCTGTGAGTGACAATGGTGGTAGTAGTAACAAGGGAGAGTTAGAGAGGGTGTTTACGTACTTTGATGAGAATGGAGATGGAAAAGTGTCACCTGCAGAGTTGAGGAAGTGTGTGAAGGCGGTAGGAGGTGAGCTGACGGTGGAGGAGGCGGAGATGGCAGTGAGGCTATCGGATTCTGATGGGGACGGATTATTGGGCATTGAGGATTTTACGAAACTGATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGGGTGAGTTGATGGGAGCATTTGGAATGTATGAAACAGAAGGATACATTACTCCTAAGAGCTTGAAGAACATGTTGAGT</gDNA_template>
            <first_frame> K  S  T  I  R  P  N  T  Y  N  F  Q  S  F  L  C  *  F  Q  S  S  T  L  F  S  L  N  Y  I  L  L  M  C  M  V  S  S  V  S  V  S  T  A  E  K  E  S  F  F  S  R  L  R  N  M  F  H  F  R  R  N  E  D  E  K  K  T  T  T  T  T  T  T  R  A  A  A  A  A  A  T  T  T  T  N  C  V  P  V  S  D  N  G  G  S  S  N  K  G  E  L  E  R  V  F  T  Y  F  D  E  N  G  D  G  K  V  S  P  A  E  L  R  K  C  V  K  A  V  G  G  E  L  T  V  E  E  A  E  M  A  V  R  L  S  D  S  D  G  D  G  L  L  G  I  E  D  F  T  K  L  M  E  G  M  E  E  E  R  N  K  E  G  E  L  M  G  A  F  G  M  Y  E  T  E  G  Y  I  T  P  K  S  L  K  N  M  L  S </first_frame>
            <second_frame>  R  V  L  Y  G  Q  T  L  I  I  S  K  V  F  F  V  D  F  K  V  Q  P  F  S  H  L  T  I  F  Y  L  C  V  W  Y  H  Q  C  L  F  P  Q  L  R  K  S  L  F  S  R  D  Y  E  I  C  F  I  S  E  G  M  K  M  R  R  R  Q  R  Q  Q  Q  Q  R  E  L  L  L  L  Q  Q  L  L  L  L  T  V  F  L  *  V  T  M  V  V  V  V  T  R  E  S  *  R  G  C  L  R  T  L  M  R  M  E  M  E  K  C  H  L  Q  S  *  G  S  V  *  R  R  *  E  V  S  *  R  W  R  R  R  R  W  Q  *  G  Y  R  I  L  M  G  T  D  Y  W  A  L  R  I  L  R  N  *  W  K  E  W  R  K  R  G  I  K  R  V  S  *  W  E  H  L  E  C  M  K  Q  K  D  T  L  L  L  R  A  *  R  T  C  *   </second_frame>
            <third_frame>   E  Y  Y  T  A  K  H  L  *  F  P  K  F  S  L  L  I  S  K  F  N  P  F  L  T  *  L  Y  S  T  Y  V  Y  G  I  I  S  V  C  F  H  S  *  E  R  V  F  F  L  E  I  T  K  Y  V  S  F  Q  K  E  *  R  *  E  E  D  N  D  N  N  N  N  E  S  C  C  C  C  S  N  Y  Y  Y  *  L  C  S  C  E  *  Q  W  W  *  *  *  Q  G  R  V  R  E  G  V  Y  V  L  *  *  E  W  R  W  K  S  V  T  C  R  V  E  E  V  C  E  G  G  R  R  *  A  D  G  G  G  G  G  D  G  S  E  A  I  G  F  *  W  G  R  I  I  G  H  *  G  F  Y  E  T  D  G  R  N  G  G  R  E  E  *  R  G  *  V  D  G  S  I  W  N  V  *  N  R  R  I  H  Y  S  *  E  L  E  E  H  V  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63920" stop="63381"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQSSTLFSLNYILLMCMVSSVSVSTAEKESFFSRLRNMFHFRRNEDEKKTTTTTTTRAAAAAATTTTNCVPVSDNGGSSNKGELERVFTYFDENGDGKVSPAELRKCVKAVGGELTVEEAEMAVRLSDSDGDGLLGIEDFTKLMEGMEEERNKEGELMGAFGMYETEGYITPKSLKNMLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="65945" PGL_stop="64998"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65945" e_stop="64998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65945" e_stop="64998" e_length="948"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65945" stop="65003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65944" stop="65619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65942" stop="65324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65942" stop="65417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65580" stop="64998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTTTATTACATAGTTTTCTTTGTTAATTTCAAGTTCAACTCCATTTACTCATATTCAAACTTTCTTGAATAAAAGAAAAAGTAGTTCAAAGGTATATTTGTTTACTAGCATGTGTATCGCGTCAGTATCTAGTGAATGACCTTAACGATTGTTTTAGAAGTAGAGTTTTACTAGCCTGACGATTCAAAGCAAGGTCGAAATTCATCCCTCTTTTTAAAACTGATTAATTAACGACCCACCATATCCACAGCTGTAAAGGAATCTTTTTTCTCAAGATTACGGAATATGTTTCATCTCAAAAAGAAGAAAGACGAGAAGAAGACGACAACAACAGCAACAACAACAGCCACTACTATTACTAGTAACAATGGAGAGTTAGGGTATTTACGTACTTTGATGAGAATGGAGATGGGAAGGTGTCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGAAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAAGAAAAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATATCAATGGAGATGGAGTTCTTAGTTTTGATGAGTTTAAAATTATGATGACATGTTAGAAGAGTTCAAAGAGAAATATTTGTGTAATTACTAAATAGGATTCTTGTGATCAAATAATTCATTGAGATTTTTCATTTCATATTTGTAAAGTCCATATTTCATGAATTGGAGCATGTTTTACTTCTTTATTTGTTAAATTATTCAATGAACCAAGTATATAATTACTATC</gDNA_template>
            <first_frame> V  F  I  T  *  F  S  L  L  I  S  S  S  T  P  F  T  H  I  Q  T  F  L  N  K  R  K  S  S  S  K  V  Y  L  F  T  S  M  C  I  A  S  V  S  S  E  *  P  *  R  L  F  *  K  *  S  F  T  S  L  T  I  Q  S  K  V  E  I  H  P  S  F  *  N  *  L  I  N  D  P  P  Y  P  Q  L  *  R  N  L  F  S  Q  D  Y  G  I  C  F  I  S  K  R  R  K  T  R  R  R  R  Q  Q  Q  Q  Q  Q  Q  P  L  L  L  L  V  T  M  E  S  *  G  I  Y  V  L  *  *  E  W  R  W  E  G  V  T  N  G  A  K  E  M  H  E  G  G  R  R  *  D  N  G  E  G  G  G  D  G  G  E  A  I  G  F  *  W  G  R  V  V  R  V  *  G  F  Y  E  V  N  G  R  N  G  R  K  E  E  *  R  E  *  V  D  G  S  I  W  N  V  *  N  G  R  I  H  Y  S  *  E  L  E  D  D  V  E  S  T  R  R  V  N  L  H  *  *  M  Q  G  Y  D  K  E  I  *  Y  Q  W  R  W  S  S  *  F  *  *  V  *  N  Y  D  D  M  L  E  E  F  K  E  K  Y  L  C  N  Y  *  I  G  F  L  *  S  N  N  S  L  R  F  F  I  S  Y  L  *  S  P  Y  F  M  N  W  S  M  F  Y  F  F  I  C  *  I  I  Q  *  T  K  Y  I  I  T  I </first_frame>
            <second_frame>  S  L  L  H  S  F  L  C  *  F  Q  V  Q  L  H  L  L  I  F  K  L  S  *  I  K  E  K  V  V  Q  R  Y  I  C  L  L  A  C  V  S  R  Q  Y  L  V  N  D  L  N  D  C  F  R  S  R  V  L  L  A  *  R  F  K  A  R  S  K  F  I  P  L  F  K  T  D  *  L  T  T  H  H  I  H  S  C  K  G  I  F  F  L  K  I  T  E  Y  V  S  S  Q  K  E  E  R  R  E  E  D  D  N  N  S  N  N  N  S  H  Y  Y  Y  *  *  Q  W  R  V  R  V  F  T  Y  F  D  E  N  G  D  G  K  V  S  P  M  E  L  R  R  C  M  K  A  V  G  G  E  I  T  V  K  E  A  E  M  V  V  R  L  S  D  S  D  G  D  G  L  L  G  F  E  D  F  T  K  L  M  E  G  M  E  E  K  R  N  K  E  S  E  L  M  G  A  F  G  M  Y  E  M  E  G  Y  I  T  P  K  S  L  K  M  M  L  S  R  L  G  E  S  T  S  I  D  K  C  K  V  M  I  R  R  F  D  I  N  G  D  G  V  L  S  F  D  E  F  K  I  M  M  T  C  *  K  S  S  K  R  N  I  C  V  I  T  K  *  D  S  C  D  Q  I  I  H  *  D  F  S  F  H  I  C  K  V  H  I  S  *  I  G  A  C  F  T  S  L  F  V  K  L  F  N  E  P  S  I  *  L  L   </second_frame>
            <third_frame>   L  Y  Y  I  V  F  F  V  N  F  K  F  N  S  I  Y  S  Y  S  N  F  L  E  *  K  K  K  *  F  K  G  I  F  V  Y  *  H  V  Y  R  V  S  I  *  *  M  T  L  T  I  V  L  E  V  E  F  Y  *  P  D  D  S  K  Q  G  R  N  S  S  L  F  L  K  L  I  N  *  R  P  T  I  S  T  A  V  K  E  S  F  F  S  R  L  R  N  M  F  H  L  K  K  K  K  D  E  K  K  T  T  T  T  A  T  T  T  A  T  T  I  T  S  N  N  G  E  L  G  Y  L  R  T  L  M  R  M  E  M  G  R  C  H  Q  W  S  *  G  D  A  *  R  R  *  E  V  R  *  R  *  R  R  R  R  W  W  *  G  Y  R  I  L  M  G  T  G  C  *  G  L  R  I  L  R  S  *  W  K  E  W  K  K  R  G  I  K  R  V  S  *  W  E  H  L  E  C  M  K  W  K  D  T  L  L  L  R  A  *  R  *  C  *  V  D  S  A  S  Q  P  P  L  I  N  A  R  L  *  *  G  D  L  I  S  M  E  M  E  F  L  V  L  M  S  L  K  L  *  *  H  V  R  R  V  Q  R  E  I  F  V  *  L  L  N  R  I  L  V  I  K  *  F  I  E  I  F  H  F  I  F  V  K  S  I  F  H  E  L  E  H  V  L  L  L  Y  L  L  N  Y  S  M  N  Q  V  Y  N  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65578" stop="65168"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QWRVRVFTYFDENGDGKVSPMELRRCMKAVGGEITVKEAEMVVRLSDSDGDGLLGFEDFTKLMEGMEEKRNKESELMGAFGMYEMEGYITPKSLKMMLSRLGESTSIDKCKVMIRRFDINGDGVLSFDEFKIMMTC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="65000" PGL_stop="68074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65000" e_stop="65314"/>
            <exon e_start="67529" e_stop="68074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65000" e_stop="65314" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65315" i_stop="67528" i_length="2214"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="67529" e_stop="68074" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65000" stop="65314"/>
              <exon start="67529" stop="68074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722612" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65133" stop="65314"/>
              <exon start="67529" stop="68006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718606" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTAATTATATACTTGGTTCATTGAATAATTTAACAAATAAAGAAGTAAAACATGCTCCAATTCATGAAATATGGACTTTACAAATATGAAATGAAAAATCTCAATGAATTATTTGATCACAAGAATCCTATTTAGTAATTACACAAATATTTCTCTTTGAACTCTTCTAACATGTCATCATAATTTTAAACTCATCAAAACTAAGAACTCCATCTCCATTGATATCAAATCTCCTTATCATAACCTTGCATTTATCAATGGAGGTTGACTCGCCGAGTCGACTCAACATCATCTTCAAGCTCTTAGGAGTAAT : GTATCCTTCCATTTCATACATTCCAAATGCTCCCATCAACTCACTCTCTTTATTCCTCTCTTCCTCCATTCCTTCCATTAACTTCGTAAAATCCTCAAACCCTAACAACCCGTCCCCATCAGAATCCGATAGCCTCACCACCATCTCCGCCTCCTCCACCGTTATCTCACCTCCTACCGCCTTCATGCATCTCCTTAGCTCCATTGGTGATACCTTTCCATCTCCATTCTCATCAAAGTACGTAAATACCCTCTCTAACTCACCACTATTACTATCACTCACCGATAAACGATCAATAGTACTAGTACTAGTAATAGTTGTTGTTGTTGTTACACTCTCATGTTCCTTCTTAGGAGTATTAGCCTTCTTTAGAAAAAACCTTTTACGTAATCTTGAGAAAAAAGATCCCTTTTCAGCCATGGAAACAGTAACTAACACCATATTAGACATGGTAGATGTAAGTAAGAAAATGAGTAAGTGATATAAGAGTTTTAACTTTGAAACAAAGAAATCTTAGGAAAGTTATATAATTTTTTGTTGTTGAAA</gDNA_template>
            <first_frame> *  *  L  Y  T  W  F  I  E  *  F  N  K  *  R  S  K  T  C  S  N  S  *  N  M  D  F  T  N  M  K  *  K  I  S  M  N  Y  L  I  T  R  I  L  F  S  N  Y  T  N  I  S  L  *  T  L  L  T  C  H  H  N  F  K  L  I  K  T  K  N  S  I  S  I  D  I  K  S  P  Y  H  N  L  A  F  I  N  G  G  *  L  A  E  S  T  Q  H  H  L  Q  A  L  R  S  N  :  V  S  F  H  F  I  H  S  K  C  S  H  Q  L  T  L  F  I  P  L  F  L  H  S  F  H  *  L  R  K  I  L  K  P  *  Q  P  V  P  I  R  I  R  *  P  H  H  H  L  R  L  L  H  R  Y  L  T  S  Y  R  L  H  A  S  P  *  L  H  W  *  Y  L  S  I  S  I  L  I  K  V  R  K  Y  P  L  *  L  T  T  I  T  I  T  H  R  *  T  I  N  S  T  S  T  S  N  S  C  C  C  C  Y  T  L  M  F  L  L  R  S  I  S  L  L  *  K  K  P  F  T  *  S  *  E  K  R  S  L  F  S  H  G  N  S  N  *  H  H  I  R  H  G  R  C  K  *  E  N  E  *  V  I  *  E  F  *  L  *  N  K  E  I  L  G  K  L  Y  N  F  L  L  L  K </first_frame>
            <second_frame>  S  N  Y  I  L  G  S  L  N  N  L  T  N  K  E  V  K  H  A  P  I  H  E  I  W  T  L  Q  I  *  N  E  K  S  Q  *  I  I  *  S  Q  E  S  Y  L  V  I  T  Q  I  F  L  F  E  L  F  *  H  V  I  I  I  L  N  S  S  K  L  R  T  P  S  P  L  I  S  N  L  L  I  I  T  L  H  L  S  M  E  V  D  S  P  S  R  L  N  I  I  F  K  L  L  G  V  M :   Y  P  S  I  S  Y  I  P  N  A  P  I  N  S  L  S  L  F  L  S  S  S  I  P  S  I  N  F  V  K  S  S  N  P  N  N  P  S  P  S  E  S  D  S  L  T  T  I  S  A  S  S  T  V  I  S  P  P  T  A  F  M  H  L  L  S  S  I  G  D  T  F  P  S  P  F  S  S  K  Y  V  N  T  L  S  N  S  P  L  L  L  S  L  T  D  K  R  S  I  V  L  V  L  V  I  V  V  V  V  V  T  L  S  C  S  F  L  G  V  L  A  F  F  R  K  N  L  L  R  N  L  E  K  K  D  P  F  S  A  M  E  T  V  T  N  T  I  L  D  M  V  D  V  S  K  K  M  S  K  *  Y  K  S  F  N  F  E  T  K  K  S  *  E  S  Y  I  I  F  C  C  *   </second_frame>
            <third_frame>   V  I  I  Y  L  V  H  *  I  I  *  Q  I  K  K  *  N  M  L  Q  F  M  K  Y  G  L  Y  K  Y  E  M  K  N  L  N  E  L  F  D  H  K  N  P  I  *  *  L  H  K  Y  F  S  L  N  S  S  N  M  S  S  *  F  *  T  H  Q  N  *  E  L  H  L  H  *  Y  Q  I  S  L  S  *  P  C  I  Y  Q  W  R  L  T  R  R  V  D  S  T  S  S  S  S  S  *  E  *   : C  I  L  P  F  H  T  F  Q  M  L  P  S  T  H  S  L  Y  S  S  L  P  P  F  L  P  L  T  S  *  N  P  Q  T  L  T  T  R  P  H  Q  N  P  I  A  S  P  P  S  P  P  P  P  P  L  S  H  L  L  P  P  S  C  I  S  L  A  P  L  V  I  P  F  H  L  H  S  H  Q  S  T  *  I  P  S  L  T  H  H  Y  Y  Y  H  S  P  I  N  D  Q  *  Y  *  Y  *  *  *  L  L  L  L  L  H  S  H  V  P  S  *  E  Y  *  P  S  L  E  K  T  F  Y  V  I  L  R  K  K  I  P  F  Q  P  W  K  Q  *  L  T  P  Y  *  T  W  *  M  *  V  R  K  *  V  S  D  I  R  V  L  T  L  K  Q  R  N  L  R  K  V  I  *  F  F  V  V  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65172" stop="65314"/>
                    <exon start="67529" stop="68009"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVIIILNSSKLRTPSPLISNLLIITLHLSMEVDSPSRLNIIFKLLGVMYPSISYIPNAPINSLSLFLSSSIPSINFVKSSNPNNPSPSESDSLTTISASSTVISPPTAFMHLLSSIGDTFPSPFSSKYVNTLSNSPLLLSLTDKRSIVLVLVIVVVVVTLSCSFLGVLAFFRKNLLRNLEKKDPFSAMETVTNTILDMVDVSKKMSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="68067" PGL_stop="67228"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68067" e_stop="67228"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="68067" e_stop="67228" e_length="840"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68067" stop="67281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68007" stop="67459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67578" stop="67228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67578" stop="67228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376606" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAAAAATTATATAACTTTCCTAAGATTTCTTTGTTTCAAAGTTAAAACTCTTATATCACTTACTCATTTTCTTACTTACATCTACCATGTCTAATATGGTGTTAGTTACTGTTTCCATGGCTGAAAAGGGATCTTTTTTCTCAAGATTACGTAAAAGGTTTTTTCTAAAGAAGGCTAATACTCCTAAGAAGGAACATGAGAGTGTAACAACAACAACAACTATTACTAGTACTAGTACTATTGATCGTTTATCGGTGAGTGATAGTAATAGTGGTGAGTTAGAGAGGGTATTTACGTACTTTGATGAGAATGGAGATGGAAAGGTATCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGGAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATACTAATGGAGATGGAGTTCTTAGCTTTGATGAGTTCAAAGTTATGATGACAAGTTAGAAGAGATATTTGTGTACATAATTCTTTTGGCCTATTGGCCTTGTTATTGTTATTTTATTTCTTCTTGTTTCTAGTAATTATATAAATGGTTTTTGGTTGAGATTTATACATTCATAGATTCAAATTTGTGAAACAATTCCTTGGTTTTTACTAA</gDNA_template>
            <first_frame> N  K  K  L  Y  N  F  P  K  I  S  L  F  Q  S  *  N  S  Y  I  T  Y  S  F  S  Y  L  H  L  P  C  L  I  W  C  *  L  L  F  P  W  L  K  R  D  L  F  S  Q  D  Y  V  K  G  F  F  *  R  R  L  I  L  L  R  R  N  M  R  V  *  Q  Q  Q  Q  L  L  L  V  L  V  L  L  I  V  Y  R  *  V  I  V  I  V  V  S  *  R  G  Y  L  R  T  L  M  R  M  E  M  E  R  Y  H  Q  W  S  *  G  D  A  *  R  R  *  E  V  R  *  R  W  R  R  R  R  W  W  *  G  Y  R  I  L  M  G  T  G  C  *  G  L  R  I  L  R  S  *  W  K  E  W  R  K  R  G  I  K  R  V  S  *  W  E  H  L  E  C  M  K  W  K  D  T  L  L  L  R  A  *  R  *  C  *  V  D  S  A  S  Q  P  P  L  I  N  A  R  L  *  *  G  D  L  I  L  M  E  M  E  F  L  A  L  M  S  S  K  L  *  *  Q  V  R  R  D  I  C  V  H  N  S  F  G  L  L  A  L  L  L  L  F  Y  F  F  L  F  L  V  I  I  *  M  V  F  G  *  D  L  Y  I  H  R  F  K  F  V  K  Q  F  L  G  F  Y  * </first_frame>
            <second_frame>  T  K  N  Y  I  T  F  L  R  F  L  C  F  K  V  K  T  L  I  S  L  T  H  F  L  T  Y  I  Y  H  V  *  Y  G  V  S  Y  C  F  H  G  *  K  G  I  F  F  L  K  I  T  *  K  V  F  S  K  E  G  *  Y  S  *  E  G  T  *  E  C  N  N  N  N  N  Y  Y  *  Y  *  Y  Y  *  S  F  I  G  E  *  *  *  *  W  *  V  R  E  G  I  Y  V  L  *  *  E  W  R  W  K  G  I  T  N  G  A  K  E  M  H  E  G  G  R  R  *  D  N  G  G  G  G  G  D  G  G  E  A  I  G  F  *  W  G  R  V  V  R  V  *  G  F  Y  E  V  N  G  R  N  G  G  R  E  E  *  R  E  *  V  D  G  S  I  W  N  V  *  N  G  R  I  H  Y  S  *  E  L  E  D  D  V  E  S  T  R  R  V  N  L  H  *  *  M  Q  G  Y  D  K  E  I  *  Y  *  W  R  W  S  S  *  L  *  *  V  Q  S  Y  D  D  K  L  E  E  I  F  V  Y  I  I  L  L  A  Y  W  P  C  Y  C  Y  F  I  S  S  C  F  *  *  L  Y  K  W  F  L  V  E  I  Y  T  F  I  D  S  N  L  *  N  N  S  L  V  F  T   </second_frame>
            <third_frame>   Q  K  I  I  *  L  S  *  D  F  F  V  S  K  L  K  L  L  Y  H  L  L  I  F  L  L  T  S  T  M  S  N  M  V  L  V  T  V  S  M  A  E  K  G  S  F  F  S  R  L  R  K  R  F  F  L  K  K  A  N  T  P  K  K  E  H  E  S  V  T  T  T  T  T  I  T  S  T  S  T  I  D  R  L  S  V  S  D  S  N  S  G  E  L  E  R  V  F  T  Y  F  D  E  N  G  D  G  K  V  S  P  M  E  L  R  R  C  M  K  A  V  G  G  E  I  T  V  E  E  A  E  M  V  V  R  L  S  D  S  D  G  D  G  L  L  G  F  E  D  F  T  K  L  M  E  G  M  E  E  E  R  N  K  E  S  E  L  M  G  A  F  G  M  Y  E  M  E  G  Y  I  T  P  K  S  L  K  M  M  L  S  R  L  G  E  S  T  S  I  D  K  C  K  V  M  I  R  R  F  D  T  N  G  D  G  V  L  S  F  D  E  F  K  V  M  M  T  S  *  K  R  Y  L  C  T  *  F  F  W  P  I  G  L  V  I  V  I  L  F  L  L  V  S  S  N  Y  I  N  G  F  W  L  R  F  I  H  S  *  I  Q  I  C  E  T  I  P  W  F  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68041" stop="67382"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFFVSKLKLLYHLLIFLLTSTMSNMVLVTVSMAEKGSFFSRLRKRFFLKKANTPKKEHESVTTTTTITSTSTIDRLSVSDSNSGELERVFTYFDENGDGKVSPMELRRCMKAVGGEITVEEAEMVVRLSDSDGDGLLGFEDFTKLMEGMEEERNKESELMGAFGMYEMEGYITPKSLKMMLSRLGESTSIDKCKVMIRRFDTNGDGVLSFDEFKVMMTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="72402" PGL_stop="71755"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72402" e_stop="71755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72402" e_stop="71755" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72402" stop="71875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72039" stop="71755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGCTTCCAACTGCATTGACAAAGCTGCTTGATGAAAGTTCTGAGTTGCTTGAAGACATCATTGGAGGTAAATCTCTACAGGCTTGTAGAAGCTCGGAAACTCTCAGAGGTAACGTTGTAGAAGATGAGAATCCAATTGAAGCATTTAAGAAACGCCTAATAGATGCTGTGGAGAGCGACTTTTCTACTGGATTTGCTGATACAGAAAAGGATAGGATTGATAAATGTAAGAAAACATGGCAAAAATTCTTAAAAAGGATCTGGGCTTTAGGGCCTAGACAGGTCGGTCCCAACATTCTCCTCACTCCGGATGTGAAAGGAAAGAGCGCCGATGTTTCTATTCTTATAAAGGGTTCCCCTTATGTATCGAAAAAATTGGGATTTACGGATGACAATGATGATAGCAGCGCATCACCAGAATCATCAACCAGTTTGGATCCGACCCTTTTACGAGAAGCTGAGAATCTTGAAAGCAGTATATTATCTGGATTTCAGTTAGCTACAGCATCTGGCCCTTTATGTGATGAGCCAATGTGGGGTTTGGCATTTGTTATTGAAGCTTCCATATCTCCATTAGCTACGCAACCAAATGATAGTGAGACCGGCCCTATTCCACAGCCTGAACAATATGGGCTCTTACCTGGACA</gDNA_template>
            <first_frame> E  A  S  N  C  I  D  K  A  A  *  *  K  F  *  V  A  *  R  H  H  W  R  *  I  S  T  G  L  *  K  L  G  N  S  Q  R  *  R  C  R  R  *  E  S  N  *  S  I  *  E  T  P  N  R  C  C  G  E  R  L  F  Y  W  I  C  *  Y  R  K  G  *  D  *  *  M  *  E  N  M  A  K  I  L  K  K  D  L  G  F  R  A  *  T  G  R  S  Q  H  S  P  H  S  G  C  E  R  K  E  R  R  C  F  Y  S  Y  K  G  F  P  L  C  I  E  K  I  G  I  Y  G  *  Q  *  *  *  Q  R  I  T  R  I  I  N  Q  F  G  S  D  P  F  T  R  S  *  E  S  *  K  Q  Y  I  I  W  I  S  V  S  Y  S  I  W  P  F  M  *  *  A  N  V  G  F  G  I  C  Y  *  S  F  H  I  S  I  S  Y  A  T  K  *  *  *  D  R  P  Y  S  T  A  *  T  I  W  A  L  T  W  T </first_frame>
            <second_frame>  K  L  P  T  A  L  T  K  L  L  D  E  S  S  E  L  L  E  D  I  I  G  G  K  S  L  Q  A  C  R  S  S  E  T  L  R  G  N  V  V  E  D  E  N  P  I  E  A  F  K  K  R  L  I  D  A  V  E  S  D  F  S  T  G  F  A  D  T  E  K  D  R  I  D  K  C  K  K  T  W  Q  K  F  L  K  R  I  W  A  L  G  P  R  Q  V  G  P  N  I  L  L  T  P  D  V  K  G  K  S  A  D  V  S  I  L  I  K  G  S  P  Y  V  S  K  K  L  G  F  T  D  D  N  D  D  S  S  A  S  P  E  S  S  T  S  L  D  P  T  L  L  R  E  A  E  N  L  E  S  S  I  L  S  G  F  Q  L  A  T  A  S  G  P  L  C  D  E  P  M  W  G  L  A  F  V  I  E  A  S  I  S  P  L  A  T  Q  P  N  D  S  E  T  G  P  I  P  Q  P  E  Q  Y  G  L  L  P  G   </second_frame>
            <third_frame>   S  F  Q  L  H  *  Q  S  C  L  M  K  V  L  S  C  L  K  T  S  L  E  V  N  L  Y  R  L  V  E  A  R  K  L  S  E  V  T  L  *  K  M  R  I  Q  L  K  H  L  R  N  A  *  *  M  L  W  R  A  T  F  L  L  D  L  L  I  Q  K  R  I  G  L  I  N  V  R  K  H  G  K  N  S  *  K  G  S  G  L  *  G  L  D  R  S  V  P  T  F  S  S  L  R  M  *  K  E  R  A  P  M  F  L  F  L  *  R  V  P  L  M  Y  R  K  N  W  D  L  R  M  T  M  M  I  A  A  H  H  Q  N  H  Q  P  V  W  I  R  P  F  Y  E  K  L  R  I  L  K  A  V  Y  Y  L  D  F  S  *  L  Q  H  L  A  L  Y  V  M  S  Q  C  G  V  W  H  L  L  L  K  L  P  Y  L  H  *  L  R  N  Q  M  I  V  R  P  A  L  F  H  S  L  N  N  M  G  S  Y  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72401" stop="71757"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLPTALTKLLDESSELLEDIIGGKSLQACRSSETLRGNVVEDENPIEAFKKRLIDAVESDFSTGFADTEKDRIDKCKKTWQKFLKRIWALGPRQVGPNILLTPDVKGKSADVSILIKGSPYVSKKLGFTDDNDDSSASPESSTSLDPTLLREAENLESSILSGFQLATASGPLCDEPMWGLAFVIEASISPLATQPNDSETGPIPQPEQYGLLPG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="77655" PGL_stop="76563"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77655" e_stop="76563"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="77655" e_stop="76563" e_length="1093"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77655" stop="76969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77070" stop="76563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77070" stop="76563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTTCTCTCCCACTTGTTTACGAAGAGCATTTTTAGTGTGAATTTGGTAATGATCGGCCGGCGATTTTTTTGTATGTGATTCGTCGGAGTTTAACGGCGATGACTATGCAGAATATCGTGGTGGAGTCATCGGCGGTAAATGAGAGAAAAGAACTATCGAGAACGACGACGGCGATTACGACGATTACGACGAGGGAGGATGAGAAACGAGGCGGAGGCGGAAATCAGCATAAAAGGATAGGAGAAGTGGCGGGAGGGACGGCGGCGGAGTGTGCGATGGTATGTTGTTGTTGTCCGTGCACGGTGCTGCACTTTCTCCTACTTGCTCTGTATAAAGTTCCGACGGGACTTTGCCGGAAAGCATGGAGGAGTAAGAAGCAGAAGAAGGTTTTGAAGAAGAAAAACAGCACTAATAATTCTCCTGGTGTTTACTACACCGACGATGATAAGGATTATTTCGATGGCGGCGGTAACGTAAACAGAGGATCATCGGAAACAGCCGAATTTGAAACGGAGATGTGGCACCGATTTTACGATGGCGCTGGATTTGGAAGGAGCTCATCTCAAAAGGAATTAGAAGAAGAACAACAACAGCAACATCAATGATTCTCCCGGTGATTACTATATCTACATCGATAAGGATTGTTCCAATGTAACCGGCGACGGCGAGGATCATCGGAAATGGAGATTTGGATTGCAGTAGCTCATCTCAAACGAAACAACAACAACAACAAGAATTTCCCGACGACGGCGATGTTCATGACGGAGGTTCACCGGAAACGGCCTGAAATGGAAATATCAACTAATTCAAGGACTGATGAGAAAAAAAAAGTCAGTATCATCAACTGAAAATCAAATAAAGGCATAATTCAACTGAATTACGCATATTAATTCCGCTGCGTAAAATTTTATTTTTACCTTATAAAAATTAAAAATTATTTTTAATAAATTGTTAAATTCGATATATCTTTTTGCTATTAAAGATTTATAATTATATAGTTTACCTATATAATTTATACAGCATTTTGTAAGAGACTCAAAAAGTTTATATGTGATCTTTATTTTGTATAAATACAAGCTTTTTTCATTTG</gDNA_template>
            <first_frame> Q  F  L  S  H  L  F  T  K  S  I  F  S  V  N  L  V  M  I  G  R  R  F  F  C  M  *  F  V  G  V  *  R  R  *  L  C  R  I  S  W  W  S  H  R  R  *  M  R  E  K  N  Y  R  E  R  R  R  R  L  R  R  L  R  R  G  R  M  R  N  E  A  E  A  E  I  S  I  K  G  *  E  K  W  R  E  G  R  R  R  S  V  R  W  Y  V  V  V  V  R  A  R  C  C  T  F  S  Y  L  L  C  I  K  F  R  R  D  F  A  G  K  H  G  G  V  R  S  R  R  R  F  *  R  R  K  T  A  L  I  I  L  L  V  F  T  T  P  T  M  I  R  I  I  S  M  A  A  V  T  *  T  E  D  H  R  K  Q  P  N  L  K  R  R  C  G  T  D  F  T  M  A  L  D  L  E  G  A  H  L  K  R  N  *  K  K  N  N  N  S  N  I  N  D  S  P  G  D  Y  Y  I  Y  I  D  K  D  C  S  N  V  T  G  D  G  E  D  H  R  K  W  R  F  G  L  Q  *  L  I  S  N  E  T  T  T  T  T  R  I  S  R  R  R  R  C  S  *  R  R  F  T  G  N  G  L  K  W  K  Y  Q  L  I  Q  G  L  M  R  K  K  K  S  V  S  S  T  E  N  Q  I  K  A  *  F  N  *  I  T  H  I  N  S  A  A  *  N  F  I  F  T  L  *  K  L  K  I  I  F  N  K  L  L  N  S  I  Y  L  F  A  I  K  D  L  *  L  Y  S  L  P  I  *  F  I  Q  H  F  V  R  D  S  K  S  L  Y  V  I  F  I  L  Y  K  Y  K  L  F  S  F  </first_frame>
            <second_frame>  N  F  S  P  T  C  L  R  R  A  F  L  V  *  I  W  *  *  S  A  G  D  F  F  V  C  D  S  S  E  F  N  G  D  D  Y  A  E  Y  R  G  G  V  I  G  G  K  *  E  K  R  T  I  E  N  D  D  G  D  Y  D  D  Y  D  E  G  G  *  E  T  R  R  R  R  K  S  A  *  K  D  R  R  S  G  G  R  D  G  G  G  V  C  D  G  M  L  L  L  S  V  H  G  A  A  L  S  P  T  C  S  V  *  S  S  D  G  T  L  P  E  S  M  E  E  *  E  A  E  E  G  F  E  E  E  K  Q  H  *  *  F  S  W  C  L  L  H  R  R  *  *  G  L  F  R  W  R  R  *  R  K  Q  R  I  I  G  N  S  R  I  *  N  G  D  V  A  P  I  L  R  W  R  W  I  W  K  E  L  I  S  K  G  I  R  R  R  T  T  T  A  T  S  M  I  L  P  V  I  T  I  S  T  S  I  R  I  V  P  M  *  P  A  T  A  R  I  I  G  N  G  D  L  D  C  S  S  S  S  Q  T  K  Q  Q  Q  Q  Q  E  F  P  D  D  G  D  V  H  D  G  G  S  P  E  T  A  *  N  G  N  I  N  *  F  K  D  *  *  E  K  K  S  Q  Y  H  Q  L  K  I  K  *  R  H  N  S  T  E  L  R  I  L  I  P  L  R  K  I  L  F  L  P  Y  K  N  *  K  L  F  L  I  N  C  *  I  R  Y  I  F  L  L  L  K  I  Y  N  Y  I  V  Y  L  Y  N  L  Y  S  I  L  *  E  T  Q  K  V  Y  M  *  S  L  F  C  I  N  T  S  F  F  H  L </second_frame>
            <third_frame>   I  S  L  P  L  V  Y  E  E  H  F  *  C  E  F  G  N  D  R  P  A  I  F  L  Y  V  I  R  R  S  L  T  A  M  T  M  Q  N  I  V  V  E  S  S  A  V  N  E  R  K  E  L  S  R  T  T  T  A  I  T  T  I  T  T  R  E  D  E  K  R  G  G  G  G  N  Q  H  K  R  I  G  E  V  A  G  G  T  A  A  E  C  A  M  V  C  C  C  C  P  C  T  V  L  H  F  L  L  L  A  L  Y  K  V  P  T  G  L  C  R  K  A  W  R  S  K  K  Q  K  K  V  L  K  K  K  N  S  T  N  N  S  P  G  V  Y  Y  T  D  D  D  K  D  Y  F  D  G  G  G  N  V  N  R  G  S  S  E  T  A  E  F  E  T  E  M  W  H  R  F  Y  D  G  A  G  F  G  R  S  S  S  Q  K  E  L  E  E  E  Q  Q  Q  Q  H  Q  *  F  S  R  *  L  L  Y  L  H  R  *  G  L  F  Q  C  N  R  R  R  R  G  S  S  E  M  E  I  W  I  A  V  A  H  L  K  R  N  N  N  N  N  K  N  F  P  T  T  A  M  F  M  T  E  V  H  R  K  R  P  E  M  E  I  S  T  N  S  R  T  D  E  K  K  K  V  S  I  I  N  *  K  S  N  K  G  I  I  Q  L  N  Y  A  Y  *  F  R  C  V  K  F  Y  F  Y  L  I  K  I  K  N  Y  F  *  *  I  V  K  F  D  I  S  F  C  Y  *  R  F  I  I  I  *  F  T  Y  I  I  Y  T  A  F  C  K  R  L  K  K  F  I  C  D  L  Y  F  V  *  I  Q  A  F  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77617" stop="77048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CEFGNDRPAIFLYVIRRSLTAMTMQNIVVESSAVNERKELSRTTTAITTITTREDEKRGGGGNQHKRIGEVAGGTAAECAMVCCCCPCTVLHFLLLALYKVPTGLCRKAWRSKKQKKVLKKKNSTNNSPGVYYTDDDKDYFDGGGNVNRGSSETAEFETEMWHRFYDGAGFGRSSSQKELEEEQQQQHQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77014" stop="76805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLFQCNRRRRGSSEMEIWIAVAHLKRNNNNNKNFPTTAMFMTEVHRKRPEMEISTNSRTDEKKKVSIIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="82124" PGL_stop="78740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82124" e_stop="81926"/>
            <exon e_start="79901" e_stop="79799"/>
            <exon e_start="79235" e_stop="78845"/>
            <exon e_start="78748" e_stop="78741"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.290" acc_prob="0.696" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.283" e_score="0.977"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82124" e_stop="81926" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79901" e_stop="79799" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.290" acc_prob="0.696">
            <gDNA_intron_boundary i_start="79798" i_stop="79236" i_length="563"/>
          </intron>
          <exon e_serial="3" e_score="0.977">
            <gDNA_exon_boundary e_start="79235" e_stop="78845" e_length="391"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.283">
            <gDNA_intron_boundary i_start="78844" i_stop="78749" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="0.750">
            <gDNA_exon_boundary e_start="78748" e_stop="78741" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82124" stop="81926"/>
              <exon start="79901" stop="79799"/>
              <exon start="79235" stop="78845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82122" stop="81926"/>
              <exon start="79901" stop="79799"/>
              <exon start="79235" stop="78845"/>
              <exon start="78748" stop="78741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82118" stop="81926"/>
              <exon start="79901" stop="79799"/>
              <exon start="79235" stop="78845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82114" stop="81926"/>
              <exon start="79901" stop="79799"/>
              <exon start="79235" stop="79020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82113" stop="81926"/>
              <exon start="79901" stop="79799"/>
              <exon start="79235" stop="78936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82109" stop="81926"/>
              <exon start="79901" stop="79799"/>
              <exon start="79235" stop="78949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82107" stop="81926"/>
              <exon start="79901" stop="79799"/>
              <exon start="79235" stop="79074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82101" stop="81926"/>
              <exon start="79901" stop="79799"/>
              <exon start="79235" stop="79071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGCCATGGCTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA : CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATG : GTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAAATTTTTGTGCTCTAGGTTGTGCTTTTGACTATGAGATTTTGATGTTTGTTTGCCTACAAAATGGCTATAATGAAGTGCAATTTATGGCTTTGAAGTTTAAAGAT : GAATAAAA</gDNA_template>
            <first_frame> *  S  H  G  *  R  R  L  C  I  Q  V  F  L  K  E  T  L  G  R  L  Q  G  V  L  G  *  E  I  L  L  F  G  *  L  F  K  V  H  Q  T  R  *  A  I  T  V  V  V  *  S  *  C  G  G  V  H  C  F  *  A  S  S  W  T  N   : T  E  D  C  *  G  S  S  *  V  W  C  C  R  R  P  T  W  S  C  F  N  C  R  S  Y  M  E  V  L  K  E  S  A  W :   Y  C  I  V  P  W  S  W  S  C  L  W  L  D  I  R  T  G  S  R  Q  P  P  A  A  A  I  Q  D  G  Y  N  G  F  T  G  E  V  H  G  M  V  A  E  Q  S  R  T  T  V  L  I  F  S  L  P  V  R  D  L  K  K  Q  K  L  W  I  C  S  L  A  R  *  H  S  H  F  V  I  G  N  K  N  L  L  T  V  F  N  L  Y  L  V  N  *  N  F  C  A  L  G  C  A  F  D  Y  E  I  L  M  F  V  C  L  Q  N  G  Y  N  E  V  Q  F  M  A  L  K  F  K  D  :  E  *   </first_frame>
            <second_frame>  K  A  M  A  E  E  D  S  V  S  K  S  F  L  R  R  H  W  E  G  Y  K  E  F  W  G  E  R  F  S  F  L  D  N  Y  S  R  F  I  K  R  D  K  P  L  P  S  W  S  E  A  D  V  E  E  F  I  A  S  E  P  V  H  G  P  T  :  L  K  T  A  R  E  A  A  K  F  G  A  V  G  G  L  L  G  A  V  S  T  A  G  V  T  W  K  Y  S  R  S  L  H   : G  T  A  L  S  L  G  A  G  A  V  F  G  W  T  F  G  Q  E  V  A  N  H  R  L  Q  L  Y  R  M  D  T  M  A  S  Q  V  K  F  M  E  W  W  Q  N  K  V  E  R  Q  S  *  F  S  L  F  L  Y  E  I  *  R  N  K  N  S  G  F  A  R  *  R  D  N  T  V  I  L  L  L  A  I  K  I  C  *  Q  C  S  T  C  I  W  *  I  E  I  F  V  L  *  V  V  L  L  T  M  R  F  *  C  L  F  A  Y  K  M  A  I  M  K  C  N  L  W  L  *  S  L  K  M :   N  K  </second_frame>
            <third_frame>   K  P  W  L  K  K  T  L  Y  P  S  L  S  *  G  D  T  G  K  V  T  R  S  F  G  V  R  D  S  P  F  W  I  T  I  Q  G  S  S  N  A  I  S  H  Y  R  R  G  L  K  L  M  W  R  S  S  L  L  L  S  Q  F  M  D  Q  H :   *  R  L  L  G  K  Q  L  S  L  V  L  *  E  A  Y  L  E  L  F  Q  L  Q  E  L  H  G  S  T  Q  G  V  C  M  :  V  L  H  C  P  L  E  L  E  L  S  L  A  G  H  S  D  R  K  S  P  T  T  G  C  S  Y  T  G  W  I  Q  W  L  H  R  *  S  S  W  N  G  G  R  T  K  S  N  D  S  L  N  F  L  S  S  C  T  R  F  E  E  T  K  T  L  D  L  L  V  S  A  I  T  Q  S  F  C  Y  W  Q  *  K  F  V  D  S  V  Q  L  V  S  G  E  L  K  F  L  C  S  R  L  C  F  *  L  *  D  F  D  V  C  L  P  T  K  W  L  *  *  S  A  I  Y  G  F  E  V  *  R   : *  I  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82123" stop="81926"/>
                    <exon start="79901" stop="79799"/>
                    <exon start="79235" stop="79081"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAMAEEDSVSKSFLRRHWEGYKEFWGERFSFLDNYSRFIKRDKPLPSWSEADVEEFIASEPVHGPTLKTAREAAKFGAVGGLLGAVSTAGVTWKYSRSLHGTALSLGAGAVFGWTFGQEVANHRLQLYRMDTMASQVKFMEWWQNKVERQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="82114" e_stop="81926"/>
            <exon e_start="79901" e_stop="79799"/>
            <exon e_start="79235" e_stop="78966"/>
            <exon e_start="78748" e_stop="78740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.290" acc_prob="0.696" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.283" e_score="1.000"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82114" e_stop="81926" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79901" e_stop="79799" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.290" acc_prob="0.696">
            <gDNA_intron_boundary i_start="79798" i_stop="79236" i_length="563"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79235" e_stop="78966" e_length="270"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.283">
            <gDNA_intron_boundary i_start="78965" i_stop="78749" i_length="217"/>
          </intron>
          <exon e_serial="4" e_score="0.889">
            <gDNA_exon_boundary e_start="78748" e_stop="78740" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82114" stop="81926"/>
              <exon start="79901" stop="79799"/>
              <exon start="79235" stop="79020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82112" stop="81926"/>
              <exon start="79901" stop="79799"/>
              <exon start="79235" stop="78966"/>
              <exon start="78748" stop="78740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82107" stop="81926"/>
              <exon start="79901" stop="79799"/>
              <exon start="79235" stop="79074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82101" stop="81926"/>
              <exon start="79901" stop="79799"/>
              <exon start="79235" stop="79071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA : CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATG : GTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTT : GAATAAAAA</gDNA_template>
            <first_frame> A  E  E  D  S  V  S  K  S  F  L  R  R  H  W  E  G  Y  K  E  F  W  G  E  R  F  S  F  L  D  N  Y  S  R  F  I  K  R  D  K  P  L  P  S  W  S  E  A  D  V  E  E  F  I  A  S  E  P  V  H  G  P  T  :  L  K  T  A  R  E  A  A  K  F  G  A  V  G  G  L  L  G  A  V  S  T  A  G  V  T  W  K  Y  S  R  S  L  H   : G  T  A  L  S  L  G  A  G  A  V  F  G  W  T  F  G  Q  E  V  A  N  H  R  L  Q  L  Y  R  M  D  T  M  A  S  Q  V  K  F  M  E  W  W  Q  N  K  V  E  R  Q  S  *  F  S  L  F  L  Y  E  I  *  R  N  K  N  S  G  F  A  R  *  R  D  N  T  V  I  L  L  L  A  I  K  I  C  *  Q  C  S  T   : *  I  K  </first_frame>
            <second_frame>  L  K  K  T  L  Y  P  S  L  S  *  G  D  T  G  K  V  T  R  S  F  G  V  R  D  S  P  F  W  I  T  I  Q  G  S  S  N  A  I  S  H  Y  R  R  G  L  K  L  M  W  R  S  S  L  L  L  S  Q  F  M  D  Q  H :   *  R  L  L  G  K  Q  L  S  L  V  L  *  E  A  Y  L  E  L  F  Q  L  Q  E  L  H  G  S  T  Q  G  V  C  M  :  V  L  H  C  P  L  E  L  E  L  S  L  A  G  H  S  D  R  K  S  P  T  T  G  C  S  Y  T  G  W  I  Q  W  L  H  R  *  S  S  W  N  G  G  R  T  K  S  N  D  S  L  N  F  L  S  S  C  T  R  F  E  E  T  K  T  L  D  L  L  V  S  A  I  T  Q  S  F  C  Y  W  Q  *  K  F  V  D  S  V  Q  L  :  E  *  K </second_frame>
            <third_frame>   *  R  R  L  C  I  Q  V  F  L  K  E  T  L  G  R  L  Q  G  V  L  G  *  E  I  L  L  F  G  *  L  F  K  V  H  Q  T  R  *  A  I  T  V  V  V  *  S  *  C  G  G  V  H  C  F  *  A  S  S  W  T  N   : T  E  D  C  *  G  S  S  *  V  W  C  C  R  R  P  T  W  S  C  F  N  C  R  S  Y  M  E  V  L  K  E  S  A  W :   Y  C  I  V  P  W  S  W  S  C  L  W  L  D  I  R  T  G  S  R  Q  P  P  A  A  A  I  Q  D  G  Y  N  G  F  T  G  E  V  H  G  M  V  A  E  Q  S  R  T  T  V  L  I  F  S  L  P  V  R  D  L  K  K  Q  K  L  W  I  C  S  L  A  R  *  H  S  H  F  V  I  G  N  K  N  L  L  T  V  F  N  L :   N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82114" stop="81926"/>
                    <exon start="79901" stop="79799"/>
                    <exon start="79235" stop="79081"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEEDSVSKSFLRRHWEGYKEFWGERFSFLDNYSRFIKRDKPLPSWSEADVEEFIASEPVHGPTLKTAREAAKFGAVGGLLGAVSTAGVTWKYSRSLHGTALSLGAGAVFGWTFGQEVANHRLQLYRMDTMASQVKFMEWWQNKVERQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="82107" e_stop="81926"/>
            <exon e_start="79901" e_stop="79797"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="0.978"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="82107" e_stop="81926" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="79901" e_stop="79797" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82107" stop="81926"/>
              <exon start="79901" stop="79797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA : CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATGGT</gDNA_template>
            <first_frame> K  T  L  Y  P  S  L  S  *  G  D  T  G  K  V  T  R  S  F  G  V  R  D  S  P  F  W  I  T  I  Q  G  S  S  N  A  I  S  H  Y  R  R  G  L  K  L  M  W  R  S  S  L  L  L  S  Q  F  M  D  Q  H :   *  R  L  L  G  K  Q  L  S  L  V  L  *  E  A  Y  L  E  L  F  Q  L  Q  E  L  H  G  S  T  Q  G  V  C  M   </first_frame>
            <second_frame>  R  L  C  I  Q  V  F  L  K  E  T  L  G  R  L  Q  G  V  L  G  *  E  I  L  L  F  G  *  L  F  K  V  H  Q  T  R  *  A  I  T  V  V  V  *  S  *  C  G  G  V  H  C  F  *  A  S  S  W  T  N   : T  E  D  C  *  G  S  S  *  V  W  C  C  R  R  P  T  W  S  C  F  N  C  R  S  Y  M  E  V  L  K  E  S  A  W  </second_frame>
            <third_frame>   D  S  V  S  K  S  F  L  R  R  H  W  E  G  Y  K  E  F  W  G  E  R  F  S  F  L  D  N  Y  S  R  F  I  K  R  D  K  P  L  P  S  W  S  E  A  D  V  E  E  F  I  A  S  E  P  V  H  G  P  T  :  L  K  T  A  R  E  A  A  K  F  G  A  V  G  G  L  L  G  A  V  S  T  A  G  V  T  W  K  Y  S  R  S  L  H  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82105" stop="81926"/>
                    <exon start="79901" stop="79797"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSVSKSFLRRHWEGYKEFWGERFSFLDNYSRFIKRDKPLPSWSEADVEEFIASEPVHGPTLKTAREAAKFGAVGGLLGAVSTAGVTWKYSRSLHG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="87052" PGL_stop="82643"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87052" e_stop="86550"/>
            <exon e_start="85417" e_stop="85142"/>
            <exon e_start="84067" e_stop="83900"/>
            <exon e_start="83264" e_stop="82643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87052" e_stop="86550" e_length="503"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="86549" i_stop="85418" i_length="1132"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85417" e_stop="85142" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.938" acc_prob="0.985">
            <gDNA_intron_boundary i_start="85141" i_stop="84068" i_length="1074"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84067" e_stop="83900" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83899" i_stop="83265" i_length="635"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="83264" e_stop="82643" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87052" stop="86550"/>
              <exon start="85417" stop="85358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87052" stop="86611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87018" stop="86550"/>
              <exon start="85417" stop="85142"/>
              <exon start="84067" stop="83900"/>
              <exon start="83264" stop="82665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86992" stop="86550"/>
              <exon start="85417" stop="85383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86992" stop="86558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86836" stop="86550"/>
              <exon start="85417" stop="85142"/>
              <exon start="84067" stop="83900"/>
              <exon start="83264" stop="83048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86781" stop="86550"/>
              <exon start="85417" stop="85142"/>
              <exon start="84067" stop="83900"/>
              <exon start="83264" stop="83064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85221" stop="85142"/>
              <exon start="84067" stop="83900"/>
              <exon start="83264" stop="82688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84023" stop="83900"/>
              <exon start="83264" stop="82738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84023" stop="83900"/>
              <exon start="83264" stop="82738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84021" stop="83900"/>
              <exon start="83264" stop="82738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84020" stop="83900"/>
              <exon start="83264" stop="82765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83169" stop="82662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83105" stop="82643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83077" stop="82662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83059" stop="82668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83021" stop="82668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83017" stop="82643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83017" stop="82668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCACTCTATTATTTTTTCAAGAAAATTTTTCATTGTACCTTGTTAGATAGCCAACATTCTTTCACAATTCTTCCTTTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCATGATTTTCCCTTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAG : GTCAGGCTTGTGTGATCCAAAACCGTCAGCGTTGAGCTATAGGAAGTACGAGCACATCTGTGGTAGGCCTTTGGGGTTACGATTTGACAAAAGAACAGGTGACTTATATATTGCCGATGCATATTTGGGGTTAATGAAGGTAGGCCCTGAAGGTGGATTAGCAGAATCTTTGACAACTGAGGCTGAGGGGGTACCTATAGGATTTGCAAATGACTTGGATGTTGATGATGAAGGGAATGTTTATTTTACGGATAGCAGCACAAAGTACCAACGCAG : GAATTTTATACAGCTGGTTTTCTCAGCAGAAGATAGTGGGAAGGTTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAG : GTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAATGAAACACGATATATATATCGCTATAACATCA</gDNA_template>
            <first_frame> T  T  L  L  F  F  Q  E  N  F  S  L  Y  L  V  R  *  P  T  F  F  H  N  S  S  F  W  G  I  L  *  F  Q  N  F  Q  P  H  F  M  I  F  P  L  L  K  P  H  Y  H  K  V  S  I  F  I  K  K  M  R  A  V  S  V  F  G  G  V  F  L  V  L  A  V  Y  C  G  L  D  P  F  K  H  S  A  I  S  E  F  P  N  F  E  S  F  K  V  E  M  P  A  W  S  E  I  P  V  E  K  D  S  Q  N  L  L  Q  K  S  E  V  K  F  L  D  Q  I  Q  G  P  E  S  I  V  F  D  P  Q  G  R  G  P  Y  T  G  I  A  D  G  R  V  V  F  W  D  G  E  K  W  N  D  F  A  Y  T  S  A  N  R :   S  G  L  C  D  P  K  P  S  A  L  S  Y  R  K  Y  E  H  I  C  G  R  P  L  G  L  R  F  D  K  R  T  G  D  L  Y  I  A  D  A  Y  L  G  L  M  K  V  G  P  E  G  G  L  A  E  S  L  T  T  E  A  E  G  V  P  I  G  F  A  N  D  L  D  V  D  D  E  G  N  V  Y  F  T  D  S  S  T  K  Y  Q  R  R :   N  F  I  Q  L  V  F  S  A  E  D  S  G  K  V  L  K  Y  N  P  R  T  K  E  T  T  I  L  I  R  N  L  Q  F  P  N  G  L  S  L  S  K  D  G  S  F  F  I  F  C  E  G  S  K  G  R :   L  R  K  Y  W  L  K  G  E  K  A  G  T  S  E  V  I  A  I  L  P  G  Y  P  D  N  V  R  A  N  E  R  N  E  F  W  V  A  I  H  C  R  R  T  I  Y  S  Y  I  N  G  I  Y  P  R  L  R  Q  F  L  L  K  L  P  I  S  A  K  L  Q  Y  L  I  H  I  G  G  R  F  T  A  V  V  V  K  Y  S  P  E  G  K  L  L  Q  I  L  E  D  R  Q  G  K  V  V  R  A  V  S  E  V  E  E  R  D  G  K  L  W  M  G  S  V  L  M  S  F  I  S  V  Y  Q  L  E  *  T  L  E  L  L  L  W  L  W  L  I  I  N  Y  F  S  I  G  K  *  L  I  L  L  Q  R  V  V  C  S  I  Y  L  N  K  G  L  I  V  A  Y  T  E  L  V  C  K  L  S  H  H  L  K  K  C  L  I  I  Q  R  *  K  M  K  H  D  I  Y  I  A  I  T  S </first_frame>
            <second_frame>  P  L  Y  Y  F  F  K  K  I  F  H  C  T  L  L  D  S  Q  H  S  F  T  I  L  P  F  G  V  Y  Y  N  S  K  I  F  N  P  I  S  *  F  S  L  Y  S  N  P  I  I  I  K  F  Q  F  L  S  R  K  *  E  Q  F  Q  Y  L  V  V  C  S  L  C  W  Q  C  I  V  G  W  T  L  L  S  I  V  Q  F  L  S  S  Q  I  L  S  L  L  R  L  R  C  Q  L  G  L  K  S  Q  L  K  K  I  H  K  I  C  F  K  N  L  K  L  S  S  W  I  K  F  R  G  Q  K  V  L  F  L  I  L  R  V  E  D  L  I  Q  G  *  L  M  E  E  L  C  F  G  M  V  K  N  G  M  I  L  L  I  L  Q  L  I   : G  Q  A  C  V  I  Q  N  R  Q  R  *  A  I  G  S  T  S  T  S  V  V  G  L  W  G  Y  D  L  T  K  E  Q  V  T  Y  I  L  P  M  H  I  W  G  *  *  R  *  A  L  K  V  D  *  Q  N  L  *  Q  L  R  L  R  G  Y  L  *  D  L  Q  M  T  W  M  L  M  M  K  G  M  F  I  L  R  I  A  A  Q  S  T  N  A   : G  I  L  Y  S  W  F  S  Q  Q  K  I  V  G  R  F  S  N  T  I  L  G  R  K  K  P  L  F  L  F  A  T  F  N  F  Q  M  V  C  H  *  A  R  M  V  P  S  L  Y  F  A  K  V  P  R  A   : G  Y  E  S  T  G  *  K  V  R  K  P  V  H  Q  R  *  *  Q  S  S  R  D  I  Q  T  T  Y  E  Q  M  K  E  M  S  F  G  *  Q  S  T  V  V  V  P  S  T  V  T  *  M  A  Y  T  L  D  S  V  N  S  C  *  S  F  P  S  L  Q  S  S  N  T  S  F  T  L  V  A  G  S  L  Q  L  S  *  S  T  A  P  R  A  S  C  C  R  Y  W  K  I  D  K  G  K  S  L  E  L  S  A  R  *  R  R  G  M  G  S  F  G  W  E  V  F  S  C  L  S  F  Q  F  I  S  *  N  E  L  L  S  F  C  F  G  F  G  S  S  S  I  T  S  P  L  E  N  N  S  F  Y  F  K  E  L  F  V  V  F  I  *  I  K  V  *  *  W  R  T  Q  N  L  F  V  S  *  V  I  I  *  R  S  V  *  *  F  R  D  E  K  *  N  T  I  Y  I  S  L  *  H   </second_frame>
            <third_frame>   H  S  I  I  F  S  R  K  F  F  I  V  P  C  *  I  A  N  I  L  S  Q  F  F  L  L  G  Y  T  I  I  P  K  F  S  T  P  F  H  D  F  P  F  T  Q  T  P  L  S  *  S  F  N  F  Y  Q  E  N  E  S  S  F  S  I  W  W  C  V  P  C  V  G  S  V  L  W  V  G  P  F  *  A  *  C  N  F  *  V  P  K  F  *  V  F  *  G  *  D  A  S  L  V  *  N  P  S  *  K  R  F  T  K  F  A  S  K  I  *  S  *  V  L  G  S  N  S  G  A  R  K  Y  C  F  *  S  S  G  *  R  T  L  Y  R  D  S  *  W  K  S  C  V  L  G  W  *  K  M  E  *  F  C  L  Y  F  S  *  *  :  V  R  L  V  *  S  K  T  V  S  V  E  L  *  E  V  R  A  H  L  W  *  A  F  G  V  T  I  *  Q  K  N  R  *  L  I  Y  C  R  C  I  F  G  V  N  E  G  R  P  *  R  W  I  S  R  I  F  D  N  *  G  *  G  G  T  Y  R  I  C  K  *  L  G  C  *  *  *  R  E  C  L  F  Y  G  *  Q  H  K  V  P  T  Q  :  E  F  Y  T  A  G  F  L  S  R  R  *  W  E  G  S  Q  I  Q  S  *  D  E  R  N  H  Y  S  Y  S  Q  P  S  I  S  K  W  S  V  T  K  Q  G  W  F  L  L  Y  I  L  R  R  F  Q  G  Q  :  V  T  K  V  L  A  E  R  *  E  S  R  Y  I  R  G  N  S  N  P  P  G  I  S  R  Q  R  T  S  K  *  K  K  *  V  L  G  S  N  P  L  S  S  Y  H  L  Q  L  H  K  W  H  I  P  S  T  P  S  I  L  A  E  A  S  H  L  C  K  A  P  I  P  H  S  H  W  W  Q  V  H  C  S  C  R  E  V  Q  P  R  G  Q  A  V  A  D  I  G  R  S  T  R  E  S  R  *  S  C  Q  R  G  R  G  E  G  W  E  A  L  D  G  K  C  S  H  V  F  H  F  S  L  S  A  R  M  N  S  *  A  F  A  L  A  L  A  H  H  Q  L  L  L  H  W  K  I  T  H  F  T  S  K  S  C  L  *  Y  L  F  K  *  R  F  D  S  G  V  H  R  T  C  L  *  A  K  S  S  F  K  E  V  F  D  N  S  E  M  K  N  E  T  R  Y  I  Y  R  Y  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86959" stop="86550"/>
                    <exon start="85417" stop="85142"/>
                    <exon start="84067" stop="83900"/>
                    <exon start="83264" stop="82862"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1254</number_coding_nucleotides>
                  <number_encoded_amino_acids>418</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQNFQPHFMIFPLLKPHYHKVSIFIKKMRAVSVFGGVFLVLAVYCGLDPFKHSAISEFPNFESFKVEMPAWSEIPVEKDSQNLLQKSEVKFLDQIQGPESIVFDPQGRGPYTGIADGRVVFWDGEKWNDFAYTSANRSGLCDPKPSALSYRKYEHICGRPLGLRFDKRTGDLYIADAYLGLMKVGPEGGLAESLTTEAEGVPIGFANDLDVDDEGNVYFTDSSTKYQRRNFIQLVFSAEDSGKVLKYNPRTKETTILIRNLQFPNGLSLSKDGSFFIFCEGSKGRLRKYWLKGEKAGTSEVIAILPGYPDNVRANERNEFWVAIHCRRTIYSYINGIYPRLRQFLLKLPISAKLQYLIHIGGRFTAVVVKYSPEGKLLQILEDRQGKVVRAVSEVEERDGKLWMGSVLMSFISVYQLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="97809" PGL_stop="91273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97809" e_stop="97575"/>
            <exon e_start="95662" e_stop="95543"/>
            <exon e_start="94923" e_stop="94776"/>
            <exon e_start="93573" e_stop="93525"/>
            <exon e_start="93270" e_stop="93195"/>
            <exon e_start="91528" e_stop="91273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.948" e_score="0.966"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="0.986"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.980"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="97809" e_stop="97575" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.948">
            <gDNA_intron_boundary i_start="97574" i_stop="95663" i_length="1912"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="95662" e_stop="95543" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="95542" i_stop="94924" i_length="619"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="94923" e_stop="94776" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="94775" i_stop="93574" i_length="1202"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="93573" e_stop="93525" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="93524" i_stop="93271" i_length="254"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93270" e_stop="93195" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93194" i_stop="91529" i_length="1666"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91528" e_stop="91273" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97809" stop="97575"/>
              <exon start="95662" stop="95543"/>
              <exon start="94923" stop="94776"/>
              <exon start="93573" stop="93525"/>
              <exon start="93270" stop="93195"/>
              <exon start="91528" stop="91437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97809" stop="97575"/>
              <exon start="95662" stop="95543"/>
              <exon start="94923" stop="94776"/>
              <exon start="93573" stop="93525"/>
              <exon start="93270" stop="93195"/>
              <exon start="91528" stop="91451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93573" stop="93525"/>
              <exon start="93270" stop="93195"/>
              <exon start="91528" stop="91273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93557" stop="93525"/>
              <exon start="93270" stop="93195"/>
              <exon start="91528" stop="91273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCCTTTTGCTTCAATTTGTATACAAACTTACCTTATATTATATATGCATACTATATATACATATGTATTTCTTCTTCACTCTTCCCCTTTGATCCATGTTCTATAGGTCAATAACCTAAAAAAAAACAATTAATTATAAATATAAAATGTCATTCGATATGACTTTTTCTTCTTCACCTTCCTCAGAACGCGTTTGTTACTTGCAATGTAATTTTTGCAACACCATTCTTGCG : GTTAGTGTTCCATGCAGCAACATGTTAACCTTAGTGACAGTAAGATGTGGGCATTGTGCAAATATGCTTTCTGTTAATATTGGATCTTTAATTCAAGCTCTACCCCTTCAAGATGTTCAA : AAGCTGCAAAGGCAACAGTACACAAATGTTGAAAATAATTCTAGTAATTATAAAGCTTATGGTTCATCATCATCATCCTCTTCAAAGTTCAACAGATATTCTTCCATTGTTTCTCCTCAAATTGAACCTAAAATCCCTTCGATTCGTC : CACCAGAGAAAAGACAACGTGTTCCTTCTGCGTACAACCGATTCATCAA : GGAAGAGATTCAAAGGATCAAGGCCAGTAATCCTGATATTAGCCATCGTGAAGCTTTTAGCACTGCTGCCAAAAAT : TGGGCACATTTTCCACATATTCACTTTGGACTCAAGCTGGAGGGCAACAAATAGCGAGGGAAAAAAAACTTTAATATATGATATATACATATATATATATGCATGTCTTTTATGTTGTTTTCGTCGAAGATTTATCAAAAATAATGTTTTTATTTTTTAAAAATTACTTTTTTTTTAGATTTTATTTATAAAAATATGCTGAATATGTTATTATTATTATTGTCCTCGTCTTAATATTATTTTCAGAGTTGTGAAA</gDNA_template>
            <first_frame> N  P  F  A  S  I  C  I  Q  T  Y  L  I  L  Y  M  H  T  I  Y  T  Y  V  F  L  L  H  S  S  P  L  I  H  V  L  *  V  N  N  L  K  K  N  N  *  L  *  I  *  N  V  I  R  Y  D  F  F  F  F  T  F  L  R  T  R  L  L  L  A  M  *  F  L  Q  H  H  S  C   : G  *  C  S  M  Q  Q  H  V  N  L  S  D  S  K  M  W  A  L  C  K  Y  A  F  C  *  Y  W  I  F  N  S  S  S  T  P  S  R  C  S   : K  A  A  K  A  T  V  H  K  C  *  K  *  F  *  *  L  *  S  L  W  F  I  I  I  I  L  F  K  V  Q  Q  I  F  F  H  C  F  S  S  N  *  T  *  N  P  F  D  S  S :   T  R  E  K  T  T  C  S  F  C  V  Q  P  I  H  Q  :  G  R  D  S  K  D  Q  G  Q  *  S  *  Y  *  P  S  *  S  F  *  H  C  C  Q  K   : L  G  T  F  S  T  Y  S  L  W  T  Q  A  G  G  Q  Q  I  A  R  E  K  K  L  *  Y  M  I  Y  T  Y  I  Y  M  H  V  F  Y  V  V  F  V  E  D  L  S  K  I  M  F  L  F  F  K  N  Y  F  F  F  R  F  Y  L  *  K  Y  A  E  Y  V  I  I  I  I  V  L  V  L  I  L  F  S  E  L  *   </first_frame>
            <second_frame>  I  L  L  L  Q  F  V  Y  K  L  T  L  Y  Y  I  C  I  L  Y  I  H  M  Y  F  F  F  T  L  P  L  *  S  M  F  Y  R  S  I  T  *  K  K  T  I  N  Y  K  Y  K  M  S  F  D  M  T  F  S  S  S  P  S  S  E  R  V  C  Y  L  Q  C  N  F  C  N  T  I  L  A  :  V  S  V  P  C  S  N  M  L  T  L  V  T  V  R  C  G  H  C  A  N  M  L  S  V  N  I  G  S  L  I  Q  A  L  P  L  Q  D  V  Q  :  K  L  Q  R  Q  Q  Y  T  N  V  E  N  N  S  S  N  Y  K  A  Y  G  S  S  S  S  S  S  S  K  F  N  R  Y  S  S  I  V  S  P  Q  I  E  P  K  I  P  S  I  R   : P  P  E  K  R  Q  R  V  P  S  A  Y  N  R  F  I  K :   E  E  I  Q  R  I  K  A  S  N  P  D  I  S  H  R  E  A  F  S  T  A  A  K  N  :  W  A  H  F  P  H  I  H  F  G  L  K  L  E  G  N  K  *  R  G  K  K  N  F  N  I  *  Y  I  H  I  Y  I  C  M  S  F  M  L  F  S  S  K  I  Y  Q  K  *  C  F  Y  F  L  K  I  T  F  F  L  D  F  I  Y  K  N  M  L  N  M  L  L  L  L  L  S  S  S  *  Y  Y  F  Q  S  C  E  </second_frame>
            <third_frame>   S  F  C  F  N  L  Y  T  N  L  P  Y  I  I  Y  A  Y  Y  I  Y  I  C  I  S  S  S  L  F  P  F  D  P  C  S  I  G  Q  *  P  K  K  K  Q  L  I  I  N  I  K  C  H  S  I  *  L  F  L  L  H  L  P  Q  N  A  F  V  T  C  N  V  I  F  A  T  P  F  L  R :   L  V  F  H  A  A  T  C  *  P  *  *  Q  *  D  V  G  I  V  Q  I  C  F  L  L  I  L  D  L  *  F  K  L  Y  P  F  K  M  F  K :   S  C  K  G  N  S  T  Q  M  L  K  I  I  L  V  I  I  K  L  M  V  H  H  H  H  P  L  Q  S  S  T  D  I  L  P  L  F  L  L  K  L  N  L  K  S  L  R  F  V  :  H  Q  R  K  D  N  V  F  L  L  R  T  T  D  S  S   : R  K  R  F  K  G  S  R  P  V  I  L  I  L  A  I  V  K  L  L  A  L  L  P  K  I :   G  H  I  F  H  I  F  T  L  D  S  S  W  R  A  T  N  S  E  G  K  K  T  L  I  Y  D  I  Y  I  Y  I  Y  A  C  L  L  C  C  F  R  R  R  F  I  K  N  N  V  F  I  F  *  K  L  L  F  F  *  I  L  F  I  K  I  C  *  I  C  Y  Y  Y  Y  C  P  R  L  N  I  I  F  R  V  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97688" stop="97575"/>
                    <exon start="95662" stop="95543"/>
                    <exon start="94923" stop="94776"/>
                    <exon start="93573" stop="93525"/>
                    <exon start="93270" stop="93195"/>
                    <exon start="91528" stop="91475"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKTINYKYKMSFDMTFSSSPSSERVCYLQCNFCNTILAVSVPCSNMLTLVTVRCGHCANMLSVNIGSLIQALPLQDVQKLQRQQYTNVENNSSNYKAYGSSSSSSSKFNRYSSIVSPQIEPKIPSIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLEGNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="101687" PGL_stop="105574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101687" e_stop="101934"/>
            <exon e_start="103705" e_stop="103963"/>
            <exon e_start="105546" e_stop="105574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.868" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101687" e_stop="101934" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="101935" i_stop="103704" i_length="1770"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103705" e_stop="103963" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.868">
            <gDNA_intron_boundary i_start="103964" i_stop="105545" i_length="1582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105546" e_stop="105574" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101687" stop="101934"/>
              <exon start="103705" stop="103963"/>
              <exon start="105546" stop="105574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAG : GTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAG : GTTCCTAGTCTTTGAAAATATGGAAAAAG</gDNA_template>
            <first_frame> L  I  V  E  P  K  K  V  S  I  Y  L  R  *  R  K  H  I  F  D  Y  *  S  Q  K  Q  Q  W  V  I  I  I  I  S  *  P  T  H  L  S  L  F  V  L  V  V  K  V  S  S  F  S  C  L  F  L  A  E  F  V  N  G  T  F  D  L  Q  N  *  A  S  Y  S  C  L  G  A  F  Q  I  S  F  R :   S  N  I  L  G  E  T  L  L  *  *  R  Y  K  E  S  N  *  W  F  *  E  N  C  L  Q  L  F  Q  N  S  C  L  Q  S  K  V  S  K  W  P  C  C  V  C  E  R  S  P  R  F  R  R  *  G  *  Y  G  L  L  Q  G  G  T  V  T  R  S  L  A  S  S  T  Y  C  C  T  *  W  V  L  L  R  P  *  E  :  V  P  S  L  *  K  Y  G  K   </first_frame>
            <second_frame>  *  *  *  S  Q  K  K  F  Q  F  T  *  D  K  E  S  I  Y  S  I  I  K  V  R  S  N  N  G  S  S  S  S  S  V  N  R  P  T  C  H  S  L  Y  *  L  *  K  F  L  L  F  L  V  F  F  L  Q  N  L  S  M  E  P  L  I  F  K  I  R  L  L  I  L  A  W  V  H  F  R  S  H  S   : G  P  I  S  L  V  K  H  F  S  N  K  D  I  K  K  A  T  D  G  F  R  R  I  V  Y  N  S  S  K  I  V  A  Y  R  A  K  F  Q  N  G  H  A  A  F  V  K  E  V  R  G  F  E  D  E  D  D  T  A  F  Y  R  E  V  Q  L  L  G  R  L  H  H  R  H  I  A  A  L  N  G  F  S  C  G  P  K  R :   F  L  V  F  E  N  M  E  K  </second_frame>
            <third_frame>   N  S  R  A  K  K  S  F  N  L  L  E  I  K  K  A  Y  I  R  L  L  K  S  E  A  T  M  G  H  H  H  H  Q  L  T  D  P  L  V  T  L  C  T  S  C  K  S  F  F  F  F  L  S  F  S  C  R  I  C  Q  W  N  L  *  S  S  K  L  G  F  L  F  L  L  G  C  I  S  D  L  I  Q  :  V  Q  Y  P  W  *  N  T  S  L  I  K  I  *  R  K  Q  L  M  V  L  G  E  L  F  T  T  L  P  K  *  L  L  T  E  Q  S  F  K  M  A  M  L  R  L  *  K  K  S  E  V  S  K  M  R  M  I  R  P  S  T  G  R  Y  S  Y  S  V  A  C  I  I  D  I  L  L  H  L  M  G  S  L  A  A  L  R   : G  S  *  S  L  K  I  W  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101826" stop="101934"/>
                    <exon start="103705" stop="103963"/>
                    <exon start="105546" stop="105573"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLLFLVFFLQNLSMEPLIFKIRLLILAWVHFRSHSGPISLVKHFSNKDIKKATDGFRRIVYNSSKIVAYRAKFQNGHAAFVKEVRGFEDEDDTAFYREVQLLGRLHHRHIAALNGFSCGPKRFLVFENMEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="105585" PGL_stop="106870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105585" e_stop="105598"/>
            <exon e_start="105697" e_stop="105764"/>
            <exon e_start="106013" e_stop="106102"/>
            <exon e_start="106225" e_stop="106294"/>
            <exon e_start="106379" e_stop="106870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105585" e_stop="105598" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="105599" i_stop="105696" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105697" e_stop="105764" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.910" acc_prob="0.981">
            <gDNA_intron_boundary i_start="105765" i_stop="106012" i_length="248"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106013" e_stop="106102" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.799" acc_prob="0.953">
            <gDNA_intron_boundary i_start="106103" i_stop="106224" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106225" e_stop="106294" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.987">
            <gDNA_intron_boundary i_start="106295" i_stop="106378" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="106379" e_stop="106870" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105585" stop="105598"/>
              <exon start="105697" stop="105764"/>
              <exon start="106013" stop="106102"/>
              <exon start="106225" stop="106294"/>
              <exon start="106379" stop="106870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105587" stop="105598"/>
              <exon start="105697" stop="105764"/>
              <exon start="106013" stop="106102"/>
              <exon start="106225" stop="106294"/>
              <exon start="106379" stop="106840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAACACCTTTCTG : ACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTA : GAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAA : CTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAG : AATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATTATGAAATTAGACCTCTTCATAAAAACAAGA</gDNA_template>
            <first_frame> G  T  P  F  * :   P  S  D  D  S  T  K  L  E  N  K  T  A  D  S  S  W  H  R  C  C  F   : R  I  S  P  L  L  L  *  S  A  D  V  P  R  F  S  Q  F  K  Y  H  H  A  G  R  E  L  H  S  *   : T  L  *  C  *  P  P  L  F  C  R  E  Q  Q  S  T  S  E  V  *  M  L  Q  R :   M  W  *  *  D  L  Q  T  D  N  L  P  A  W  F  A  D  P  R  V  S  H  R  S  I  L  R  R  R  R  C  *  L  S  S  M  G  S  R  F  S  L  P  K  K  I  H  S  P  D  D  *  S  *  S  R  R  Q  L  R  F  Q  R  A  *  R  S  F  G  S  C  K  N  V  C  T  I  Y  P  *  A  Y  N  K  D  P  S  N  I  V  V  S  P  K  E  T  G  Q  D  S  S  S  L  L  M  T  *  V  M  S  C  S  Q  I  *  I  I  D  C  V  S  R  H  F  F  C  K  A  M  L  L  G  L  F  K  S  K  S  P  H  N  L  V  C  K  *  S  A  A  F  *  H  *  L  *  N  *  T  S  S  *  K  Q   </first_frame>
            <second_frame>  E  H  L  S   : D  P  L  M  T  P  L  N  W  R  I  R  L  Q  I  A  V  G  I  A  A  A  L  :  E  Y  L  H  F  F  C  D  P  P  M  Y  H  V  S  V  S  S  S  T  I  M  L  D  E  N  F  T  A  K  :  L  C  D  V  S  L  L  C  S  V  E  N  N  N  P  L  P  K  S  K  C  S  K   : E  C  G  N  E  I  C  K  Q  T  I  F  Q  L  G  L  L  I  L  E  L  V  T  G  Q  S  S  E  E  G  G  V  D  L  V  Q  W  V  Q  D  S  R  F  R  R  R  S  I  H  Q  M  I  D  P  D  L  G  D  S  Y  D  F  K  E  L  K  G  L  L  A  V  A  K  M  C  V  Q  S  I  H  K  P  T  I  K  T  P  Q  I  L  W  Y  L  Q  K  K  L  G  R  T  P  V  V  C  *  *  L  E  S  C  H  V  H  R  Y  R  S  *  I  V  *  V  D  I  F  F  V  K  L  C  Y  S  D  S  S  N  R  R  V  H  T  T  *  S  V  S  S  L  L  R  F  D  I  D  Y  E  I  R  P  L  H  K  N  K  </second_frame>
            <third_frame>   N  T  F  L  :  T  L  *  *  L  H  *  T  G  E  *  D  C  R  *  Q  L  A  S  L  L  L  * :   N  I  S  T  S  F  V  I  R  R  C  T  T  F  Q  S  V  Q  V  P  S  C  W  T  R  T  S  Q  L  N :   S  V  M  L  A  S  F  V  L  S  R  T  T  I  H  F  R  S  L  N  A  P  K  :  N  V  V  M  R  S  A  N  R  Q  S  S  S  L  V  C  *  S  S  S  *  S  P  V  N  P  Q  K  K  E  V  L  T  *  F  N  G  F  K  I  L  A  S  E  E  D  P  F  T  R  *  L  I  L  I  S  E  T  A  T  I  S  K  S  L  K  V  F  W  Q  L  Q  K  C  V  Y  N  L  S  I  S  L  Q  *  R  P  L  K  Y  C  G  I  S  K  R  N  W  A  G  L  Q  *  F  A  D  D  L  S  H  V  M  F  T  D  I  D  H  R  L  C  E  *  T  F  F  L  *  S  Y  V  T  R  T  L  Q  I  E  E  S  T  Q  L  S  L  *  V  V  C  C  V  L  T  L  I  M  K  L  D  L  F  I  K  T  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105586" stop="105598"/>
                    <exon start="105697" stop="105764"/>
                    <exon start="106013" stop="106102"/>
                    <exon start="106225" stop="106294"/>
                    <exon start="106379" stop="106692"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHLSDPLMTPLNWRIRLQIAVGIAAALEYLHFFCDPPMYHVSVSSSTIMLDENFTAKLCDVSLLCSVENNNPLPKSKCSKECGNEICKQTIFQLGLLILELVTGQSSEEGGVDLVQWVQDSRFRRRSIHQMIDPDLGDSYDFKELKGLLAVAKMCVQSIHKPTIKTPQILWYLQKKLGRTPVVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="110458" PGL_stop="107144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110416" e_stop="110140"/>
            <exon e_start="109193" e_stop="109028"/>
            <exon e_start="108699" e_stop="108561"/>
            <exon e_start="108365" e_stop="108089"/>
            <exon e_start="107920" e_stop="107722"/>
            <exon e_start="107607" e_stop="107144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.996"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.832" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="110416" e_stop="110140" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="110139" i_stop="109194" i_length="946"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109193" e_stop="109028" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="109027" i_stop="108700" i_length="328"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108699" e_stop="108561" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.832" acc_prob="0.996">
            <gDNA_intron_boundary i_start="108560" i_stop="108366" i_length="195"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108365" e_stop="108089" e_length="277"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="108088" i_stop="107921" i_length="168"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="107920" e_stop="107722" e_length="199"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.944">
            <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107607" e_stop="107144" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110416" stop="110140"/>
              <exon start="109193" stop="109028"/>
              <exon start="108699" stop="108561"/>
              <exon start="108365" stop="108089"/>
              <exon start="107920" stop="107888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110338" stop="110140"/>
              <exon start="109193" stop="109028"/>
              <exon start="108699" stop="108561"/>
              <exon start="108365" stop="108089"/>
              <exon start="107920" stop="107884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110338" stop="110140"/>
              <exon start="109193" stop="109028"/>
              <exon start="108699" stop="108561"/>
              <exon start="108365" stop="108124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110336" stop="110140"/>
              <exon start="109193" stop="109089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281205" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110335" stop="110140"/>
              <exon start="109193" stop="109028"/>
              <exon start="108699" stop="108561"/>
              <exon start="108365" stop="108089"/>
              <exon start="107920" stop="107910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110335" stop="110140"/>
              <exon start="109193" stop="109028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110334" stop="110140"/>
              <exon start="109193" stop="109028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109074" stop="109028"/>
              <exon start="108699" stop="108561"/>
              <exon start="108365" stop="108117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109053" stop="109028"/>
              <exon start="108699" stop="108561"/>
              <exon start="108365" stop="108089"/>
              <exon start="107920" stop="107794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108649" stop="108561"/>
              <exon start="108365" stop="108089"/>
              <exon start="107920" stop="107722"/>
              <exon start="107607" stop="107509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108606" stop="108561"/>
              <exon start="108365" stop="108089"/>
              <exon start="107920" stop="107777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108315" stop="108089"/>
              <exon start="107920" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108302" stop="108089"/>
              <exon start="107920" stop="107722"/>
              <exon start="107607" stop="107394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108299" stop="108089"/>
              <exon start="107920" stop="107722"/>
              <exon start="107607" stop="107569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107862" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107796" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107780" stop="107722"/>
              <exon start="107607" stop="107146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107765" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107765" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107765" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107754" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208145" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107735" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251569" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG : TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG : GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG : CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG : CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG : ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</gDNA_template>
            <first_frame> S  F  H  L  S  L  Q  R  C  V  Y  I  H  P  F  *  V  L  V  G  V  K  Y  L  G  V  L  F  F  S  Y  C  S  *  K  E  V  E  I  E  K  D  V  W  K  R  R  E  K  K  E  *  *  H  K  V  L  *  N  L  G  C  F  Q  E  C  F  R  R  *  N  Q  E  S  L  *  K  S  C  Y  E  E  S  P  *  *  G  W  *  S  *  K   : V  *  G  A  S  S  S  L  *  G  L  E  *  L  T  E  A  *  D  L  *  S  V  W  R  R  S  T  E  R  R  N  G  W  W  W  W  H  T  *  S  I  *  P  L  *  F  L  L  *  W  K  S  F  W  R :   W  W  S  *  R  T  K  R  E  E  G  *  R  C  S  A  S  I  E  G  V  A  *  G  P  I  Q  W  D  D  Q  E  T  I  A  F  A  Q  C  Y  L  L  E  V  *  W  :  Q  G  V  E  V  W  *  I  N  E  V  F  W  L  *  R  Y  W  Y  E  G  F  N  Q  T  A  W  A  W  N  D  P  A  N  A  A  A  L  *  *  M  Q  G  Y  W  R  D  N  *  R  *  G  S  L  S  S  M  Q  R  *  K  S  G  T  R  E  E  S  H  *  S  P  C  *  K  R  N  A  K  W  T  E  N  Y  I  P  W  R  G  *  *  S   : A  *  Y  S  Y  W  R  C  G  F  R  S  P  T  E  R  S  P  E  V  Q  E  E  G  *  *  P  V  C  *  S  H  I  D  L  N  *  G  T  V  W  F  P  V  H  I  G  T  L  G  W  Q  T  A  P  R  K  V  K  P  W  R  S  C  *  T  * :   S  I  Q  G  Y  Q  *  *  R  N  A  S  L  P  E  A  I  H  E  G  *  T  V  H  S  F  H  R  G  I  P  G  F  V  E  P  A  T  G  A  A  S  G  G  N  V  T  I  K  A  Y  I  T  V  L  *  H  G  T  G  *  M  *  G  D  H  I  A  *  C  E  Y  G  G  R  N  E  K  E  T  S  C  T  T  R  S  I  *  *  G  *  R  D  V  W  W  W  R  T  E  S  T  V  C  S  T  V  D  V  E  R  F  T  S  L  N  F  A  Y  S  L  V  W  F  T  V  F  C  C  F  G  N  D  M  F  W  E  V  K  K  L  M  L  *  *  N  R  N  I  I  F  L  G  N  </first_frame>
            <second_frame>  H  F  T  *  A  F  K  D  V  Y  I  Y  T  P  F  E  S  L  L  E  S  S  I  W  V  F  C  S  F  H  T  V  L  E  K  K  L  K  L  K  R  M  F  G  R  G  G  K  K  K  S  D  N  T  K  F  Y  E  I  L  G  V  S  K  N  A  S  E  D  E  I  K  K  A  Y  R  K  A  A  M  K  N  H  P  D  K  G  G  D  P  E  K  :  F  K  E  L  A  Q  A  Y  E  V  L  S  D  S  Q  K  R  E  I  Y  D  Q  Y  G  E  E  A  L  K  E  G  M  G  G  G  G  G  T  H  D  P  F  D  L  F  N  S  F  F  S  G  S  P  F  G   : G  G  G  R  R  G  Q  R  E  R  R  G  D  D  V  V  H  P  L  K  V  S  L  E  D  L  Y  N  G  M  T  K  K  L  S  L  S  R  N  V  I  C  S  K  C  S  G :   K  G  S  K  S  G  E  S  M  K  C  S  G  C  E  G  T  G  M  K  V  S  I  R  Q  L  G  P  G  M  I  Q  Q  M  Q  Q  P  C  N  K  C  K  G  T  G  E  T  I  D  D  K  D  R  C  P  Q  C  K  G  K  K  V  V  P  E  K  K  V  I  E  V  H  V  E  K  G  M  Q  N  G  Q  K  I  T  F  P  G  E  A  D  E  A  :  P  D  T  V  T  G  D  V  V  F  V  L  Q  Q  K  D  H  P  K  F  K  R  K  G  D  D  L  F  V  D  H  T  L  T  L  T  E  A  L  C  G  F  Q  F  I  L  A  H  L  D  G  R  R  L  L  V  K  S  N  P  G  E  V  V  K  P   : D  Q  F  K  A  I  N  D  E  G  M  P  V  Y  Q  R  P  F  M  K  G  K  L  Y  I  H  F  I  V  E  F  P  D  S  L  S  L  P  Q  V  Q  L  L  E  A  M  L  P  S  R  P  T  S  Q  Y  S  D  M  E  L  D  E  C  E  E  T  T  L  H  D  V  N  M  E  E  E  M  R  R  K  Q  A  A  Q  Q  E  A  Y  D  E  D  E  E  M  S  G  G  G  G  Q  R  V  Q  C  A  Q  Q  *  M  *  K  D  L  P  V  *  T  L  L  I  V  *  F  G  L  L  F  S  V  V  L  E  M  T  C  F  G  K  S  K  N  *  C  F  S  E  I  E  I  L  F  S  W  G  T </second_frame>
            <third_frame>   I  S  P  E  P  S  K  M  C  I  Y  T  P  L  L  S  P  C  W  S  Q  V  F  G  C  S  V  L  F  I  L  F  L  K  R  S  *  N  *  K  G  C  L  E  E  E  G  K  K  R  V  I  T  Q  S  F  M  K  S  W  V  F  P  R  M  L  Q  K  M  K  S  R  K  L  I  E  K  L  L  *  R  I  T  L  I  R  V  V  I  L  K  S :   L  R  S  *  L  K  L  M  R  S  *  V  T  H  R  S  V  R  F  M  I  S  M  E  K  K  H  *  K  K  E  W  V  V  V  V  A  H  M  I  H  L  T  S  L  I  P  S  L  V  E  V  L  L  E  :  V  V  V  V  E  D  K  E  R  G  G  V  T  M  *  C  I  H  *  R  C  R  L  R  T  Y  T  M  G  *  P  R  N  Y  R  F  R  A  M  L  F  A  R  S  V  V   : A  R  G  R  S  L  V  N  Q  *  S  V  L  V  V  K  V  L  V  *  R  F  Q  S  D  S  L  G  L  E  *  S  S  K  C  S  S  L  V  I  N  A  R  V  L  E  R  Q  L  T  I  R  I  V  V  L  N  A  K  V  K  K  W  Y  Q  R  R  K  S  L  K  S  M  L  K  K  E  C  K  M  D  R  K  L  H  S  L  A  R  L  M  K  R :   L  I  Q  L  L  E  M  W  F  S  F  S  N  R  K  I  T  R  S  S  R  G  R  V  M  T  C  L  L  I  T  H  *  P  *  L  R  H  C  V  V  S  S  S  Y  W  H  T  W  M  A  D  G  S  S  *  S  Q  T  L  E  K  L  L  N  L  :  I  N  S  R  L  S  M  M  K  E  C  Q  F  T  R  G  H  S  *  R  V  N  C  T  F  I  S  S  W  N  S  R  I  R  *  A  C  H  R  C  S  F  W  R  Q  C  Y  H  Q  G  L  H  H  S  T  L  T  W  N  W  M  N  V  R  R  P  H  C  M  M  *  I  W  R  K  K  *  E  G  N  K  L  H  N  K  K  H  M  M  R  M  K  R  C  L  V  V  E  D  R  E  Y  S  V  L  N  S  R  C  R  K  I  Y  Q  F  E  L  C  L  *  F  S  L  V  Y  C  F  L  L  F  W  K  *  H  V  L  G  S  Q  K  T  D  A  L  V  K  *  K  Y  Y  F  L  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110403" stop="110140"/>
                    <exon start="109193" stop="109028"/>
                    <exon start="108699" stop="108561"/>
                    <exon start="108365" stop="108089"/>
                    <exon start="107920" stop="107722"/>
                    <exon start="107607" stop="107285"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1365</number_coding_nucleotides>
                  <number_encoded_amino_acids>455</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFKDVYIYTPFESLLESSIWVFCSFHTVLEKKLKLKRMFGRGGKKKSDNTKFYEILGVSKNASEDEIKKAYRKAAMKNHPDKGGDPEKFKELAQAYEVLSDSQKREIYDQYGEEALKEGMGGGGGTHDPFDLFNSFFSGSPFGGGGRRGQRERRGDDVVHPLKVSLEDLYNGMTKKLSLSRNVICSKCSGKGSKSGESMKCSGCEGTGMKVSIRQLGPGMIQQMQQPCNKCKGTGETIDDKDRCPQCKGKKVVPEKKVIEVHVEKGMQNGQKITFPGEADEAPDTVTGDVVFVLQQKDHPKFKRKGDDLFVDHTLTLTEALCGFQFILAHLDGRRLLVKSNPGEVVKPDQFKAINDEGMPVYQRPFMKGKLYIHFIVEFPDSLSLPQVQLLEAMLPSRPTSQYSDMELDECEETTLHDVNMEEEMRRKQAAQQEAYDEDEEMSGGGGQRVQCAQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108466" e_stop="108089"/>
            <exon e_start="107920" e_stop="107722"/>
            <exon e_start="107607" e_stop="107144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="0.944" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="108466" e_stop="108089" e_length="378"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="108088" i_stop="107921" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107920" e_stop="107722" e_length="199"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.944">
            <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107607" e_stop="107144" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108466" stop="108113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108315" stop="108089"/>
              <exon start="107920" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108302" stop="108089"/>
              <exon start="107920" stop="107722"/>
              <exon start="107607" stop="107394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108299" stop="108089"/>
              <exon start="107920" stop="107722"/>
              <exon start="107607" stop="107569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107862" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107796" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107780" stop="107722"/>
              <exon start="107607" stop="107146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107765" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107765" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107765" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107754" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208145" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107735" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251569" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG : CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG : ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</gDNA_template>
            <first_frame> G  D  E  R  I  S  *  Y  R  E  V  R  F  Q  C  K  C  S  N  V  L  L  R  C  I  V  L  V  C  F  C  N  C  S  K  G  S  K  S  G  E  S  M  K  C  S  G  C  E  G  T  G  M  K  V  S  I  R  Q  L  G  P  G  M  I  Q  Q  M  Q  Q  P  C  N  K  C  K  G  T  G  E  T  I  D  D  K  D  R  C  P  Q  C  K  G  K  K  V  V  P  E  K  K  V  I  E  V  H  V  E  K  G  M  Q  N  G  Q  K  I  T  F  P  G  E  A  D  E  A  :  P  D  T  V  T  G  D  V  V  F  V  L  Q  Q  K  D  H  P  K  F  K  R  K  G  D  D  L  F  V  D  H  T  L  T  L  T  E  A  L  C  G  F  Q  F  I  L  A  H  L  D  G  R  R  L  L  V  K  S  N  P  G  E  V  V  K  P   : D  Q  F  K  A  I  N  D  E  G  M  P  V  Y  Q  R  P  F  M  K  G  K  L  Y  I  H  F  I  V  E  F  P  D  S  L  S  L  P  Q  V  Q  L  L  E  A  M  L  P  S  R  P  T  S  Q  Y  S  D  M  E  L  D  E  C  E  E  T  T  L  H  D  V  N  M  E  E  E  M  R  R  K  Q  A  A  Q  Q  E  A  Y  D  E  D  E  E  M  S  G  G  G  G  Q  R  V  Q  C  A  Q  Q  *  M  *  K  D  L  P  V  *  T  L  L  I  V  *  F  G  L  L  F  S  V  V  L  E  M  T  C  F  G  K  S  K  N  *  C  F  S  E  I  E  I  L  F  S  W  G  T </first_frame>
            <second_frame>  E  M  K  G  S  P  D  I  E  K  *  D  F  N  A  S  A  Q  M  F  S  Y  V  V  L  Y  W  F  V  S  V  T  A  A  R  G  R  S  L  V  N  Q  *  S  V  L  V  V  K  V  L  V  *  R  F  Q  S  D  S  L  G  L  E  *  S  S  K  C  S  S  L  V  I  N  A  R  V  L  E  R  Q  L  T  I  R  I  V  V  L  N  A  K  V  K  K  W  Y  Q  R  R  K  S  L  K  S  M  L  K  K  E  C  K  M  D  R  K  L  H  S  L  A  R  L  M  K  R :   L  I  Q  L  L  E  M  W  F  S  F  S  N  R  K  I  T  R  S  S  R  G  R  V  M  T  C  L  L  I  T  H  *  P  *  L  R  H  C  V  V  S  S  S  Y  W  H  T  W  M  A  D  G  S  S  *  S  Q  T  L  E  K  L  L  N  L  :  I  N  S  R  L  S  M  M  K  E  C  Q  F  T  R  G  H  S  *  R  V  N  C  T  F  I  S  S  W  N  S  R  I  R  *  A  C  H  R  C  S  F  W  R  Q  C  Y  H  Q  G  L  H  H  S  T  L  T  W  N  W  M  N  V  R  R  P  H  C  M  M  *  I  W  R  K  K  *  E  G  N  K  L  H  N  K  K  H  M  M  R  M  K  R  C  L  V  V  E  D  R  E  Y  S  V  L  N  S  R  C  R  K  I  Y  Q  F  E  L  C  L  *  F  S  L  V  Y  C  F  L  L  F  W  K  *  H  V  L  G  S  Q  K  T  D  A  L  V  K  *  K  Y  Y  F  L  G  E   </second_frame>
            <third_frame>   R  *  K  D  L  L  I  *  R  S  E  I  S  M  Q  V  L  K  C  S  L  T  L  Y  C  I  G  L  F  L  *  L  Q  Q  G  V  E  V  W  *  I  N  E  V  F  W  L  *  R  Y  W  Y  E  G  F  N  Q  T  A  W  A  W  N  D  P  A  N  A  A  A  L  *  *  M  Q  G  Y  W  R  D  N  *  R  *  G  S  L  S  S  M  Q  R  *  K  S  G  T  R  E  E  S  H  *  S  P  C  *  K  R  N  A  K  W  T  E  N  Y  I  P  W  R  G  *  *  S   : A  *  Y  S  Y  W  R  C  G  F  R  S  P  T  E  R  S  P  E  V  Q  E  E  G  *  *  P  V  C  *  S  H  I  D  L  N  *  G  T  V  W  F  P  V  H  I  G  T  L  G  W  Q  T  A  P  R  K  V  K  P  W  R  S  C  *  T  * :   S  I  Q  G  Y  Q  *  *  R  N  A  S  L  P  E  A  I  H  E  G  *  T  V  H  S  F  H  R  G  I  P  G  F  V  E  P  A  T  G  A  A  S  G  G  N  V  T  I  K  A  Y  I  T  V  L  *  H  G  T  G  *  M  *  G  D  H  I  A  *  C  E  Y  G  G  R  N  E  K  E  T  S  C  T  T  R  S  I  *  *  G  *  R  D  V  W  W  W  R  T  E  S  T  V  C  S  T  V  D  V  E  R  F  T  S  L  N  F  A  Y  S  L  V  W  F  T  V  F  C  C  F  G  N  D  M  F  W  E  V  K  K  L  M  L  *  *  N  R  N  I  I  F  L  G  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108445" stop="108089"/>
                    <exon start="107920" stop="107722"/>
                    <exon start="107607" stop="107285"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YREVRFQCKCSNVLLRCIVLVCFCNCSKGSKSGESMKCSGCEGTGMKVSIRQLGPGMIQQMQQPCNKCKGTGETIDDKDRCPQCKGKKVVPEKKVIEVHVEKGMQNGQKITFPGEADEAPDTVTGDVVFVLQQKDHPKFKRKGDDLFVDHTLTLTEALCGFQFILAHLDGRRLLVKSNPGEVVKPDQFKAINDEGMPVYQRPFMKGKLYIHFIVEFPDSLSLPQVQLLEAMLPSRPTSQYSDMELDECEETTLHDVNMEEEMRRKQAAQQEAYDEDEEMSGGGGQRVQCAQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="110458" e_stop="110076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="110458" e_stop="110076" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110458" stop="110076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718487" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAAGAGAATTCTAGAGCATTCTCCACTATTCTCAATTTCTCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTT</gDNA_template>
            <first_frame> K  K  E  N  S  R  A  F  S  T  I  L  N  F  S  F  H  L  S  L  Q  R  C  V  Y  I  H  P  F  *  V  L  V  G  V  K  Y  L  G  V  L  F  F  S  Y  C  S  *  K  E  V  E  I  E  K  D  V  W  K  R  R  E  K  K  E  *  *  H  K  V  L  *  N  L  G  C  F  Q  E  C  F  R  R  *  N  Q  E  S  L  *  K  S  C  Y  E  E  S  P  *  *  G  W  *  S  *  K  G  N  L  F  V  Y  F  *  R  K  V  K  S  L  F  *  F  G  S  F  F   </first_frame>
            <second_frame>  R  K  R  I  L  E  H  S  P  L  F  S  I  S  H  F  T  *  A  F  K  D  V  Y  I  Y  T  P  F  E  S  L  L  E  S  S  I  W  V  F  C  S  F  H  T  V  L  E  K  K  L  K  L  K  R  M  F  G  R  G  G  K  K  K  S  D  N  T  K  F  Y  E  I  L  G  V  S  K  N  A  S  E  D  E  I  K  K  A  Y  R  K  A  A  M  K  N  H  P  D  K  G  G  D  P  E  K  V  I  F  L  F  I  F  E  E  R  *  S  L  C  S  N  L  G  V  F  F  </second_frame>
            <third_frame>   E  R  E  F  *  S  I  L  H  Y  S  Q  F  L  I  S  P  E  P  S  K  M  C  I  Y  T  P  L  L  S  P  C  W  S  Q  V  F  G  C  S  V  L  F  I  L  F  L  K  R  S  *  N  *  K  G  C  L  E  E  E  G  K  K  R  V  I  T  Q  S  F  M  K  S  W  V  F  P  R  M  L  Q  K  M  K  S  R  K  L  I  E  K  L  L  *  R  I  T  L  I  R  V  V  I  L  K  R  *  S  F  C  L  F  L  K  K  G  E  V  F  V  L  I  W  E  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110403" stop="110107"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFKDVYIYTPFESLLESSIWVFCSFHTVLEKKLKLKRMFGRGGKKKSDNTKFYEILGVSKNASEDEIKKAYRKAAMKNHPDKGGDPEKVIFLFIFEER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="119111" PGL_stop="122648"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119111" e_stop="119155"/>
            <exon e_start="119739" e_stop="119852"/>
            <exon e_start="121038" e_stop="121560"/>
            <exon e_start="122117" e_stop="122648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.978"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.943"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="119111" e_stop="119155" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="119156" i_stop="119738" i_length="583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119739" e_stop="119852" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="119853" i_stop="121037" i_length="1185"/>
          </intron>
          <exon e_serial="3" e_score="0.943">
            <gDNA_exon_boundary e_start="121038" e_stop="121560" e_length="523"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="121561" i_stop="122116" i_length="556"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="122117" e_stop="122648" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119111" stop="119155"/>
              <exon start="119739" stop="119852"/>
              <exon start="121038" stop="121560"/>
              <exon start="122117" stop="122262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119739" stop="119852"/>
              <exon start="121038" stop="121528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119739" stop="119852"/>
              <exon start="121038" stop="121432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122117" stop="122648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGAACAACAATTAGAACATGACGCTCGTGTACGAGAGATCGAA : GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG : TGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACAAGGAAAACAGAGATTGTCTCTGCCTGGTAGCG : GTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACCAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTTTTAGGTACTCGTTGAAGATCCCGATCTCAGAACCAAGTGTCACCCTTGCTTGTAAATACAGGGAACCTTCTTAAAGGGGAGTGATGGTATGTTGTCCACGGCAGAGTTAAAAGGAGATAGGCTTGCTGCCATCTCCTGAATAACATCTTCGCATTTGTTTCAATTCTTGTCATAATTCGTGTAATTTATATAATAGCGCGTTGTTTTCTTTACCCCTCCTCCCTCCCAGTGTAAAAAAGAGGATGAATTTGCTTTTTGTGCCACTTTTCTTGAGCTGAAAACTGGGGAATTTGGTGAGTTTGATTGCCAATTTCTTTGTTGTGTGTTGTACAAGATCTGAATGTAGGATTCATTCATTAATCTAGAGATTGTAGACCATATTGTGC</gDNA_template>
            <first_frame> V  E  Q  Q  L  E  H  D  A  R  V  R  E  I  E  :  E  G  W  C  D  S  V  G  S  V  E  Q  I  Q  E  K  L  L  K  R  Q  E  A  A  A  K  R  E  R  A  M  A  Y  A  L  A  H  Q  :  W  Q  A  G  S  R  Q  Q  A  T  L  S  G  F  E  P  D  K  S  S  W  G  W  N  W  L  E  R  W  M  A  V  R  P  W  E  N  R  F  L  D  L  N  V  R  D  G  V  M  P  N  E  N  E  S  A  E  P  V  N  G  M  K  N  Q  V  K  V  A  G  K  K  P  A  T  T  T  L  S  N  D  R  V  G  P  S  H  S  S  S  N  S  K  S  N  E  K  A  A  A  S  L  S  D  G  C  S  S  S  P  N  V  S  A  S  T  Q  E  T  P  A  A  L  V  N  K  P  K  S  K  P  N  R  E  D  L  V  E  E  A  S  S  K  P  V  L  G  S  R  S  H  S  N  P  K  E  R  S  T  P  S  D  K  Q  G  K  Q  R  L  S  L  P  G  S   : G  L  A  P  Q  T  A  R  Q  P  S  R  T  I  K  R  T  S  S  T  Q  K  P  L  K  E  K  S  K  L  N  E  T  D  T  K  S  T  A  T  V  S  Q  Q  A  A  D  *  F  L  G  T  R  *  R  S  R  S  Q  N  Q  V  S  P  L  L  V  N  T  G  N  L  L  K  G  E  *  W  Y  V  V  H  G  R  V  K  R  R  *  A  C  C  H  L  L  N  N  I  F  A  F  V  S  I  L  V  I  I  R  V  I  Y  I  I  A  R  C  F  L  Y  P  S  S  L  P  V  *  K  R  G  *  I  C  F  L  C  H  F  S  *  A  E  N  W  G  I  W  *  V  *  L  P  I  S  L  L  C  V  V  Q  D  L  N  V  G  F  I  H  *  S  R  D  C  R  P  Y  C   </first_frame>
            <second_frame>  L  N  N  N  *  N  M  T  L  V  Y  E  R  S  K :   R  A  G  V  T  V  L  D  L  L  S  K  F  K  K  S  C  *  R  D  K  R  Q  L  L  S  V  K  E  Q  W  P  M  L  *  L  T  S :   G  R  Q  D  P  G  S  R  L  H  F  L  G  L  N  Q  I  K  A  A  G  V  G  T  G  *  R  D  G  W  Q  Y  A  H  G  K  I  V  F  *  T  L  M  S  E  M  E  S  C  L  M  K  M  N  Q  P  N  L  *  T  G  *  R  T  R  *  K  L  L  G  R  N  Q  Q  L  Q  L  F  Q  M  I  E  W  V  H  L  I  Q  A  V  T  Q  N  Q  M  K  R  Q  Q  H  R  S  L  M  V  A  V  L  P  Q  M  C  Q  Q  A  H  K  K  H  L  Q  H  *  L  T  N  L  S  P  N  Q  I  V  K  I  *  L  R  K  L  V  Q  N  P  S  L  V  L  D  H  T  A  I  L  R  R  D  L  L  P  L  I  N  K  E  N  R  D  C  L  C  L  V  A  :  V  L  H  L  K  Q  R  D  N  Q  A  E  P  S  K  G  H  L  V  R  R  S  L  *  R  R  S  P  N  *  T  K  L  I  P  S  L  Q  Q  L  F  H  N  R  L  L  I  S  F  *  V  L  V  E  D  P  D  L  R  T  K  C  H  P  C  L  *  I  Q  G  T  F  L  K  G  S  D  G  M  L  S  T  A  E  L  K  G  D  R  L  A  A  I  S  *  I  T  S  S  H  L  F  Q  F  L  S  *  F  V  *  F  I  *  *  R  V  V  F  F  T  P  P  P  S  Q  C  K  K  E  D  E  F  A  F  C  A  T  F  L  E  L  K  T  G  E  F  G  E  F  D  C  Q  F  L  C  C  V  L  Y  K  I  *  M  *  D  S  F  I  N  L  E  I  V  D  H  I  V  </second_frame>
            <third_frame>   *  T  T  I  R  T  *  R  S  C  T  R  D  R   : R  G  L  V  *  Q  C  W  I  C  *  A  N  S  R  K  V  A  K  E  T  R  G  S  C  *  A  *  K  S  N  G  L  C  F  S  S  P   : V  A  G  R  I  Q  A  A  G  Y  T  F  W  V  *  T  R  *  K  Q  L  G  L  E  L  V  R  E  M  D  G  S  T  P  M  G  K  S  F  S  R  P  *  C  Q  R  W  S  H  A  *  *  K  *  I  S  R  T  C  K  R  D  E  E  P  G  K  S  C  W  E  E  T  S  N  Y  N  S  F  K  *  *  S  G  S  I  S  F  K  Q  *  L  K  I  K  *  K  G  S  S  I  A  L  *  W  L  Q  F  F  P  K  C  V  S  K  H  T  R  N  T  C  S  I  S  *  Q  T  *  V  Q  T  K  S  *  R  F  S  *  G  S  *  F  K  T  R  P  W  F  *  I  T  Q  Q  S  *  G  E  I  Y  S  L  *  *  T  R  K  T  E  I  V  S  A  W  *  R :   S  C  T  S  N  S  E  T  T  K  Q  N  H  Q  K  D  I  *  Y  A  E  A  F  E  G  E  V  Q  I  K  R  N  *  Y  Q  V  Y  S  N  C  F  T  T  G  C  *  L  V  F  R  Y  S  L  K  I  P  I  S  E  P  S  V  T  L  A  C  K  Y  R  E  P  S  *  R  G  V  M  V  C  C  P  R  Q  S  *  K  E  I  G  L  L  P  S  P  E  *  H  L  R  I  C  F  N  S  C  H  N  S  C  N  L  Y  N  S  A  L  F  S  L  P  L  L  P  P  S  V  K  K  R  M  N  L  L  F  V  P  L  F  L  S  *  K  L  G  N  L  V  S  L  I  A  N  F  F  V  V  C  C  T  R  S  E  C  R  I  H  S  L  I  *  R  L  *  T  I  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119111" stop="119155"/>
                    <exon start="119739" stop="119852"/>
                    <exon start="121038" stop="121560"/>
                    <exon start="122117" stop="122259"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEQQLEHDARVREIEEGWCDSVGSVEQIQEKLLKRQEAAAKRERAMAYALAHQWQAGSRQQATLSGFEPDKSSWGWNWLERWMAVRPWENRFLDLNVRDGVMPNENESAEPVNGMKNQVKVAGKKPATTTLSNDRVGPSHSSSNSKSNEKAAASLSDGCSSSPNVSASTQETPAALVNKPKSKPNREDLVEEASSKPVLGSRSHSNPKERSTPSDKQGKQRLSLPGSGLAPQTARQPSRTIKRTSSTQKPLKEKSKLNETDTKSTATVSQQAAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="120420" e_stop="120963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="120420" e_stop="120963" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120420" stop="120963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTT</gDNA_template>
            <first_frame> L  L  G  S  F  L  F  I  F  F  I  C  Y  V  C  T  Q  G  H  M  V  P  L  V  R  N  Q  E  Q  L  W  K  N  K  N  S  C  Q  Y  C  G  I  I  L  *  Y  W  L  G  R  T  W  *  A  F  S  L  L  R  I  *  P  *  I  G  G  C  G  G  K  K  F  G  *  K  D  S  S  K  *  F  R  I  F  S  S  P  D  S  I  I  I  M  I  F  Q  Y  L  L  L  F  F  Y  F  H  I  S  H  S  *  F  S  I  T  T  C  L  V  C  L  Y  F  L  T  S  L  Q  L  L  L  L  V  F  I  N  V  V  F  L  L  S  L  S  Q  G  S  I  G  S  S  L  S  T  C  Q  G  R  G  K  V  C  D  T  T  L  L  R  S  H  T  W  V  S  W  C  W  C  C  L  L  V  </first_frame>
            <second_frame>  Y  L  G  L  F  S  S  F  F  L  Y  A  M  C  V  L  K  D  T  W  C  L  *  S  E  I  R  N  N  Y  G  R  I  K  I  A  V  N  T  V  V  S  F  Y  D  T  G  *  A  G  H  G  E  P  L  A  Y  L  G  Y  D  L  R  L  E  G  V  E  V  K  N  S  G  R  R  I  V  V  N  S  F  A  S  F  P  L  L  I  V  L  L  L  *  F  F  S  I  Y  Y  C  F  S  I  S  I  F  L  I  L  S  F  L  *  L  L  V  S  Y  A  S  I  F  L  L  A  C  S  C  Y  C  L  S  S  *  M  L  C  F  C  F  P  *  A  K  G  L  L  E  A  A  S  L  P  A  K  V  G  V  R  S  V  T  L  P  S  S  D  P  T  L  G  *  V  G  V  G  V  V  C  W  F </second_frame>
            <third_frame>   T  W  V  F  S  L  H  F  F  Y  M  L  C  V  Y  S  R  T  H  G  A  S  S  Q  K  S  G  T  T  M  E  E  *  K  *  L  S  I  L  W  Y  H  F  M  I  L  V  R  Q  D  M  V  S  L  *  L  T  *  D  M  T  L  D  W  R  V  W  R  *  K  I  R  V  E  G  *  *  *  I  V  S  H  L  F  L  S  *  *  Y  Y  Y  Y  D  F  S  V  F  I  I  V  F  L  F  P  Y  F  S  F  L  V  F  Y  N  Y  L  S  R  M  P  L  F  S  Y  *  L  A  V  V  T  A  C  L  H  K  C  C  V  F  A  F  L  E  P  R  V  Y  W  K  Q  P  L  Y  L  P  R  *  G  *  G  L  *  H  Y  P  P  Q  I  P  H  L  G  K  L  V  L  V  L  F  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120750" stop="120962"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSITTCLVCLYFLTSLQLLLLVFINVVFLLSLSQGSIGSSLSTCQGRGKVCDTTLLRSHTWVSWCWCCLLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="125362" PGL_stop="128340"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125362" e_stop="126518"/>
            <exon e_start="127713" e_stop="128340"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.997"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="125362" e_stop="126518" e_length="1157"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="126519" i_stop="127712" i_length="1194"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="127713" e_stop="128340" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125362" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125451" stop="125995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126033" stop="126518"/>
              <exon start="127713" stop="127831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127824" stop="128110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127825" stop="128340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128012" stop="128334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289906" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTCTTGATGAATCTGATTCGTTATTAGATAGGTATAATGCAAGAGGGAAGAATATAATGGAACCTGAGGTGAAATTTGAGGAATTTAAAGTTGGTTCACAGTTTTTTGTGTTAACAAGAAAGCATTCTTTAATGGTGATCAAAGATAGGAAGTTATGGAGGAAATTTAGAAAACCATGTTTAAATGTTGAGTCTTGTTATCCAGAAGAGCATTATTTTCCTACTTTGTTATCAATGGAGGATCCTAATGGTTGTACCAAGTATACATTGACAAATGTGAATTGGACTGATACAGTTGATGGTCATCCACATACTTATCATCCTTCTGAGGTTTCTTCAAAGCTGATTTATGATCTTAGAGAGTCAAATTCTACATATTCATACATGTTTGCAAGGAAATTTTCACCTGATTGCTTGAACCCTTTGATGGAAATGGCAGAGTCAGTCATCTTCAAGGACTAGTTCTTGCTTGAGGCAATG : GTGAGATGATGAAGGAGTGAAGACAAATCAAAGGCAAAAACTTTGATGATGTTGTGAGGACAAAAAAAGATTGGTTTGTTGTGTAGGAGTAACACATGTGGAAATAAGGTATTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAAATTTTC</gDNA_template>
            <first_frame> F  C  C  F  T  S  F  T  S  I  F  L  H  *  W  *  F  C  C  N  K  K  I  C  S  D  Y  L  *  L  S  L  F  L  L  F  S  F  L  F  L  F  S  S  Y  *  D  Q  K  S  S  Y  L  D  K  S  P  F  L  Y  P  M  N  S  T  I  F  H  F  F  T  K  Q  L  L  L  K  P  L  F  R  N  T  H  L  T  K  N  S  V  L  D  P  L  L  F  V  H  Q  K  S  H  L  C  S  *  Q  I  Q  I  *  S  F  P  Q  F  G  R  S  S  S  M  V  L  N  L  *  I  H  I  Y  T  I  S  T  Y  T  L  T  H  L  S  R  F  H  L  *  W  V  F  L  K  I  D  *  F  R  R  R  E  L  N  V  H  R  R  H  S  Y  L  L  P  G  D  Y  L  L  M  L  Y  L  T  T  H  Q  T  R  I  S  L  L  S  H  N  I  V  Y  L  Y  T  L  L  I  T  F  T  I  F  Y  L  I  P  R  N  C  R  G  K  W  S  S  L  V  I  L  R  F  L  M  N  L  I  R  Y  *  I  G  I  M  Q  E  G  R  I  *  W  N  L  R  *  N  L  R  N  L  K  L  V  H  S  F  L  C  *  Q  E  S  I  L  *  W  *  S  K  I  G  S  Y  G  G  N  L  E  N  H  V  *  M  L  S  L  V  I  Q  K  S  I  I  F  L  L  C  Y  Q  W  R  I  L  M  V  V  P  S  I  H  *  Q  M  *  I  G  L  I  Q  L  M  V  I  H  I  L  I  I  L  L  R  F  L  Q  S  *  F  M  I  L  E  S  Q  I  L  H  I  H  T  C  L  Q  G  N  F  H  L  I  A  *  T  L  *  W  K  W  Q  S  Q  S  S  S  R  T  S  S  C  L  R  Q  W :   *  D  D  E  G  V  K  T  N  Q  R  Q  K  L  *  *  C  C  E  D  K  K  R  L  V  C  C  V  G  V  T  H  V  E  I  R  Y  F  F  *  R  V  C  *  K  T  T  M  P  S  N  Q  V  N  P  K  R  E  V  S  K  T  Q  S  L  D  E  L  S  K  K  S  N  G  K  A  S  F  S  S  S  S  *  A  G  N  L  M  M  *  N  M  S  *  L  *  H  L  V  F  I  W  C  L  C  V  L  L  S  I  L  F  G  F  F  M  N  T  V  Q  S  V  S  D  P  L  K  A  M  L  F  L  K  I  *  Y  E  C  D  N  N  F  G  G  S  E  Q  Y  G  F  C  F  V  H  R  W  Q  V  Y  M  C  F  R  E  R  L  A  L  N  K  I  K  K  S  A  K  L  Y  C  F  F  Y  F  S  T  T  C  G  N  E  S  L  Y  Q  N  I  Y  Y  P  M  *  *  M  I  F  R  E  I  F </first_frame>
            <second_frame>  S  V  A  S  L  L  S  L  Q  S  F  S  I  N  G  D  F  A  V  T  R  K  Y  V  Q  I  I  C  S  Y  P  F  S  Y  S  S  H  F  C  S  Y  S  L  L  I  R  T  K  N  P  L  T  S  T  N  L  H  F  C  T  R  *  T  R  R  S  F  T  F  S  Q  S  N  C  C  *  N  H  F  S  E  T  P  I  S  Q  K  T  P  S  W  I  R  Y  C  S  S  T  K  N  R  I  Y  V  L  N  K  F  R  F  E  V  F  P  N  L  G  E  V  L  Q  W  Y  *  T  C  R  S  T  S  I  Q  Y  L  H  T  R  *  P  I  Y  Q  D  F  T  F  N  G  C  F  *  R  S  I  N  S  G  E  E  N  S  T  F  I  A  D  T  H  I  C  C  P  E  I  T  C  S  C  F  T  *  R  P  I  K  L  V  F  R  S  Y  L  T  T  L  Y  T  F  T  L  F  *  L  L  L  Q  F  F  T  *  Y  P  E  I  V  E  E  N  G  V  P  *  L  Y  *  D  S  *  *  I  *  F  V  I  R  *  V  *  C  K  R  E  E  Y  N  G  T  *  G  E  I  *  G  I  *  S  W  F  T  V  F  C  V  N  K  K  A  F  F  N  G  D  Q  R  *  E  V  M  E  E  I  *  K  T  M  F  K  C  *  V  L  L  S  R  R  A  L  F  S  Y  F  V  I  N  G  G  S  *  W  L  Y  Q  V  Y  I  D  K  C  E  L  D  *  Y  S  *  W  S  S  T  Y  L  S  S  F  *  G  F  F  K  A  D  L  *  S  *  R  V  K  F  Y  I  F  I  H  V  C  K  E  I  F  T  *  L  L  E  P  F  D  G  N  G  R  V  S  H  L  Q  G  L  V  L  A  *  G  N   : G  E  M  M  K  E  *  R  Q  I  K  G  K  N  F  D  D  V  V  R  T  K  K  D  W  F  V  V  *  E  *  H  M  W  K  *  G  I  F  F  E  G  F  V  E  K  Q  Q  C  L  Q  T  K  *  I  P  K  G  K  Y  P  K  L  K  V  W  M  S  F  Q  R  K  A  M  E  K  L  V  L  V  V  V  V  E  L  V  I  *  *  C  K  T  C  L  S  C  S  I  *  Y  S  F  G  V  C  V  C  C  S  L  Y  C  S  D  S  S  *  I  P  S  R  V  C  L  I  L  *  K  L  C  F  F  *  R  S  D  T  N  V  T  T  I  L  E  G  R  S  N  M  G  F  A  L  Y  I  D  G  K  Y  I  C  V  L  G  R  D  *  P  *  T  K  S  R  K  V  L  N  S  I  V  F  F  I  F  L  L  L  V  E  M  N  H  C  I  K  T  F  T  I  Q  C  S  K  *  F  L  E  K  F   </second_frame>
            <third_frame>   L  L  L  H  F  F  H  F  N  L  S  P  L  M  V  I  L  L  *  Q  E  N  M  F  R  L  S  V  V  I  P  F  L  T  L  L  I  S  V  L  I  L  F  L  L  G  P  K  I  L  L  P  R  Q  I  S  I  S  V  P  D  E  L  D  D  L  S  L  F  H  K  A  I  A  A  E  T  T  F  P  K  H  P  S  H  K  K  L  R  L  G  S  A  T  V  R  P  P  K  I  A  F  M  F  L  T  N  S  D  L  K  F  S  P  I  W  E  K  F  F  N  G  T  K  P  V  D  P  H  L  Y  N  I  Y  I  H  A  D  P  S  I  K  I  S  P  L  M  G  V  F  K  D  R  L  I  P  A  K  R  T  Q  R  S  S  P  T  L  I  S  A  A  R  R  L  L  A  H  A  L  L  D  D  P  S  N  S  Y  F  A  L  I  S  Q  H  C  I  P  L  H  S  F  N  Y  F  Y  N  F  L  L  D  T  Q  K  L  S  R  K  M  E  F  P  S  Y  I  E  I  L  D  E  S  D  S  L  L  D  R  Y  N  A  R  G  K  N  I  M  E  P  E  V  K  F  E  E  F  K  V  G  S  Q  F  F  V  L  T  R  K  H  S  L  M  V  I  K  D  R  K  L  W  R  K  F  R  K  P  C  L  N  V  E  S  C  Y  P  E  E  H  Y  F  P  T  L  L  S  M  E  D  P  N  G  C  T  K  Y  T  L  T  N  V  N  W  T  D  T  V  D  G  H  P  H  T  Y  H  P  S  E  V  S  S  K  L  I  Y  D  L  R  E  S  N  S  T  Y  S  Y  M  F  A  R  K  F  S  P  D  C  L  N  P  L  M  E  M  A  E  S  V  I  F  K  D  *  F  L  L  E  A  M  :  V  R  *  *  R  S  E  D  K  S  K  A  K  T  L  M  M  L  *  G  Q  K  K  I  G  L  L  C  R  S  N  T  C  G  N  K  V  F  F  L  K  G  L  L  K  N  N  N  A  F  K  P  S  K  S  Q  K  G  S  I  Q  N  S  K  F  G  *  A  F  K  E  K  Q  W  K  S  *  F  *  *  *  *  L  S  W  *  F  D  D  V  K  H  V  L  V  V  A  S  S  I  H  L  V  F  V  C  V  A  L  Y  I  V  R  I  L  H  E  Y  R  P  E  C  V  *  S  S  K  S  Y  A  F  F  K  D  L  I  R  M  *  Q  Q  F  W  R  V  G  A  I  W  V  L  L  C  T  *  M  A  S  I  Y  V  F  *  G  E  I  S  L  E  Q  N  Q  E  K  C  *  T  L  L  F  F  L  F  F  Y  Y  L  W  K  *  I  I  V  S  K  H  L  L  S  N  V  V  N  D  F  *  R  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125421" stop="126500"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QENMFRLSVVIPFLTLLISVLILFLLGPKILLPRQISISVPDELDDLSLFHKAIAAETTFPKHPSHKKLRLGSATVRPPKIAFMFLTNSDLKFSPIWEKFFNGTKPVDPHLYNIYIHADPSIKISPLMGVFKDRLIPAKRTQRSSPTLISAARRLLAHALLDDPSNSYFALISQHCIPLHSFNYFYNFLLDTQKLSRKMEFPSYIEILDESDSLLDRYNARGKNIMEPEVKFEEFKVGSQFFVLTRKHSLMVIKDRKLWRKFRKPCLNVESCYPEEHYFPTLLSMEDPNGCTKYTLTNVNWTDTVDGHPHTYHPSEVSSKLIYDLRESNSTYSYMFARKFSPDCLNPLMEMAESVIFKD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128119" stop="128316"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YECDNNFGGSEQYGFCFVHRWQVYMCFRERLALNKIKKSAKLYCFFYFSTTCGNESLYQNIYYPM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="132219" PGL_stop="135102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132219" e_stop="132413"/>
            <exon e_start="134004" e_stop="135050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132219" e_stop="132413" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="132414" i_stop="134003" i_length="1590"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="134004" e_stop="135050" e_length="1047"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132219" stop="132413"/>
              <exon start="134004" stop="134608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132221" stop="132413"/>
              <exon start="134004" stop="134455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132239" stop="132413"/>
              <exon start="134004" stop="134528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132257" stop="132413"/>
              <exon start="134004" stop="134458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132279" stop="132413"/>
              <exon start="134004" stop="134192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132288" stop="132413"/>
              <exon start="134004" stop="134549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132334" stop="132413"/>
              <exon start="134004" stop="134454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134013" stop="134514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134265" stop="134950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134265" stop="134842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134356" stop="135050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG : GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTT</gDNA_template>
            <first_frame> W  K  G  G  E  E  S  G  T  R  S  Y  A  S  D  L  K  I  S  T  E  K  A  V  T  Q  R  E  E  K  K  N  E  N  K  *  R  R  K  L  W  D  R  L  I  Q  N  W  I  Q  F  F  R  I  T  S  V  I  V  I  V  L  F  R  S  :  V  A  Q  P  L  R  C  G  K  S  A  V  S  S  A  R  T  A  Q  R  N  V  V  A  W  L  Y  H  K  A  L  S  L  Q  L  N  Q  Q  L  F  F  K  F  P  R  S  F  A  P  H  L  P  K  F  A  F  S  F  Q  V  L  P  F  R  H  V  L  N  I  I  *  D  L  F  Q  G  T  G  C  Y  R  L  L  *  A  Y  M  S  M  M  V  I  Q  P  R  *  L  D  Q  *  L  L  L  T  Y  A  I  Y  I  T  L  *  V  G  L  E  L  K  C  D  N  Q  L  L  L  F  P  E  K  A  I  M  Q  L  C  K  T  L  S  D  *  L  Y  G  V  F  V  Y  V  Y  D  Y  K  A  R  S  F  G  L  L  L  *  I  L  E  K  *  C  I  F  C  C  L  T  F  L  *  D  I  V  H  V  N  L  P  N  P  G  *  S  S  T  V  S  I  F  W  L  N  C  L  *  T  L  S  T  H  I  L  F  V  Q  F  M  T  L  R  N  F  R  C  I  S  H  C  R  S  A  H  C  R  T  H  *  F  Q  A  G  K  F  S  I  R  S  A  T  N  E  S  *  S  S  C  S  R  W  Y  S  R  T  D  G  W  F  S  I  L  L  W  R  *  F  Q  A  R  W  M  T  D  *  L  T  T  K  R  L  P  H  S  S  V  M  S  *  F  S  A  G  K  K  *  F  H  I  L  L  G  C  S  F  F  T  W  L  S  L  P  P  Q  S  H  K  K  E  N  *  R  K  K  *  *  Q  S  E  T  *  C  *  C  L  C  I  F  Q  N  L  W  V  L </first_frame>
            <second_frame>  G  K  E  E  K  R  A  A  H  V  V  T  L  Q  T  S  K  F  R  L  K  K  Q  L  H  K  E  K  R  R  R  T  K  T  N  N  E  E  N  Y  G  I  D  *  F  R  I  G  F  N  F  S  G  *  Q  A  S  S  *  S  S  C  S  D  R :   W  L  S  R  Y  D  V  V  N  P  Q  S  H  L  Q  E  Q  P  N  A  M  *  *  H  G  S  T  T  R  H  *  A  Y  N  *  T  S  N  S  F  S  S  F  L  V  H  L  L  P  T  F  L  N  L  L  S  V  F  K  F  Y  P  L  G  M  F  *  T  L  Y  R  T  C  F  K  V  Q  D  V  T  D  Y  S  R  R  I  C  Q  *  W  *  F  S  L  V  N  W  I  N  S  C  Y  *  L  M  L  Y  I  *  L  Y  R  L  G  L  S  L  N  V  I  T  N  F  S  Y  F  Q  K  K  Q  *  C  N  F  A  K  P  C  L  I  N  C  M  E  C  S  Y  M  F  M  I  I  R  R  G  H  L  V  F  C  Y  E  F  L  R  S  D  A  F  S  A  A  L  L  S  C  E  I  S  F  M  L  I  F  P  I  P  V  D  P  P  L  F  Q  F  F  G  *  I  V  S  E  H  S  Q  L  I  F  C  L  C  N  L  *  L  C  E  I  S  G  A  F  L  T  A  G  V  L  T  A  G  L  I  S  F  K  R  G  N  S  Q  L  G  Q  Q  L  M  R  A  R  V  L  V  Q  G  G  T  V  A  L  M  V  G  S  A  Y  Y  Y  G  D  N  F  K  R  A  G  *  L  T  D  *  L  P  N  D  S  L  I  R  L  S  *  V  D  F  L  L  G  K  N  D  S  I  S  C  *  D  A  V  S  L  H  G  C  H  C  H  P  N  H  I  R  K  K  I  R  G  K  S  N  N  R  V  K  H  N  A  N  V  Y  V  F  F  K  I  Y  G  F   </second_frame>
            <third_frame>   E  R  R  R  R  E  R  H  T  *  L  R  F  R  P  Q  N  F  D  *  K  S  S  Y  T  K  R  R  E  E  E  R  K  Q  I  T  K  K  I  M  G  S  T  D  S  E  L  D  S  I  F  Q  D  N  K  R  H  R  N  R  L  V  P  I   : G  G  S  A  A  T  M  W  *  I  R  S  L  I  C  K  N  S  P  T  Q  C  S  S  M  A  L  P  Q  G  I  K  L  T  I  E  P  A  T  L  F  Q  V  S  S  F  I  C  S  P  P  S  *  I  C  F  Q  F  S  S  F  T  L  *  A  C  F  E  H  Y  I  G  L  V  S  R  Y  R  M  L  Q  I  T  L  G  V  Y  V  N  D  G  N  S  A  S  L  I  G  S  I  A  V  I  N  L  C  Y  I  Y  N  F  I  G  W  A  *  A  *  M  *  *  P  T  S  P  I  S  R  K  S  N  N  A  T  L  Q  N  L  V  *  L  T  V  W  S  V  R  I  C  L  *  L  *  G  E  V  I  W  S  S  V  M  N  S  *  E  V  M  H  F  L  L  P  Y  F  P  V  R  Y  R  S  C  *  S  S  Q  S  R  L  I  L  H  C  F  N  F  L  A  K  L  S  L  N  T  L  N  S  Y  S  V  C  A  I  Y  D  F  A  K  F  Q  V  H  F  S  L  Q  E  C  S  L  P  D  S  L  V  S  S  G  E  I  L  N  *  V  S  N  *  *  E  L  E  F  L  F  K  V  V  Q  S  H  *  W  L  V  Q  H  I  T  M  E  I  I  S  S  A  L  D  D  *  L  T  D  Y  Q  T  T  P  S  F  V  C  H  E  L  I  F  C  W  E  K  M  I  P  Y  L  A  R  M  Q  F  L  Y  M  A  V  I  A  T  P  I  T  *  E  R  K  L  E  E  K  V  I  T  E  *  N  I  M  L  M  F  M  Y  F  S  K  F  M  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132327" stop="132413"/>
                    <exon start="134004" stop="134216"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRKLWDRLIQNWIQFFRITSVIVIVLFRSVAQPLRCGKSAVSSARTAQRNVVAWLYHKALSLQLNQQLFFKFPRSFAPHLPKFAFSFQVLPFRHVLNII*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134398" stop="134598"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNFAKPCLINCMECSYMFMIIRRGHLVFCYEFLRSDAFSAALLSCEISFMLIFPIPVDPPLFQFFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="132240" e_stop="132413"/>
            <exon e_start="134663" e_stop="135102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132240" e_stop="132413" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="132414" i_stop="134662" i_length="2249"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="134663" e_stop="135102" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132240" stop="132413"/>
              <exon start="134663" stop="135044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132262" stop="132413"/>
              <exon start="134663" stop="135096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132269" stop="132413"/>
              <exon start="134663" stop="135088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132270" stop="132413"/>
              <exon start="134663" stop="135102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357429" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG : GTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGGTTCTTGCTTTGTATCTCATTTGTGTCGTTTTAATCTTTATGTTAGTTGAAATTGATT</gDNA_template>
            <first_frame> G  T  R  S  Y  A  S  D  L  K  I  S  T  E  K  A  V  T  Q  R  E  E  K  K  N  E  N  K  *  R  R  K  L  W  D  R  L  I  Q  N  W  I  Q  F  F  R  I  T  S  V  I  V  I  V  L  F  R  S  :  V  H  F  S  L  Q  E  C  S  L  P  D  S  L  V  S  S  G  E  I  L  N  *  V  S  N  *  *  E  L  E  F  L  F  K  V  V  Q  S  H  *  W  L  V  Q  H  I  T  M  E  I  I  S  S  A  L  D  D  *  L  T  D  Y  Q  T  T  P  S  F  V  C  H  E  L  I  F  C  W  E  K  M  I  P  Y  L  A  R  M  Q  F  L  Y  M  A  V  I  A  T  P  I  T  *  E  R  K  L  E  E  K  V  I  T  E  *  N  I  M  L  M  F  M  Y  F  S  K  F  M  G  S  C  F  V  S  H  L  C  R  F  N  L  Y  V  S  *  N  *   </first_frame>
            <second_frame>  A  H  V  V  T  L  Q  T  S  K  F  R  L  K  K  Q  L  H  K  E  K  R  R  R  T  K  T  N  N  E  E  N  Y  G  I  D  *  F  R  I  G  F  N  F  S  G  *  Q  A  S  S  *  S  S  C  S  D  R :   C  I  S  H  C  R  S  A  H  C  R  T  H  *  F  Q  A  G  K  F  S  I  R  S  A  T  N  E  S  *  S  S  C  S  R  W  Y  S  R  T  D  G  W  F  S  I  L  L  W  R  *  F  Q  A  R  W  M  T  D  *  L  T  T  K  R  L  P  H  S  S  V  M  S  *  F  S  A  G  K  K  *  F  H  I  L  L  G  C  S  F  F  T  W  L  S  L  P  P  Q  S  H  K  K  E  N  *  R  K  K  *  *  Q  S  E  T  *  C  *  C  L  C  I  F  Q  N  L  W  V  L  A  L  Y  L  I  C  V  V  L  I  F  M  L  V  E  I  D  </second_frame>
            <third_frame>   H  T  *  L  R  F  R  P  Q  N  F  D  *  K  S  S  Y  T  K  R  R  E  E  E  R  K  Q  I  T  K  K  I  M  G  S  T  D  S  E  L  D  S  I  F  Q  D  N  K  R  H  R  N  R  L  V  P  I   : G  A  F  L  T  A  G  V  L  T  A  G  L  I  S  F  K  R  G  N  S  Q  L  G  Q  Q  L  M  R  A  R  V  L  V  Q  G  G  T  V  A  L  M  V  G  S  A  Y  Y  Y  G  D  N  F  K  R  A  G  *  L  T  D  *  L  P  N  D  S  L  I  R  L  S  *  V  D  F  L  L  G  K  N  D  S  I  S  C  *  D  A  V  S  L  H  G  C  H  C  H  P  N  H  I  R  K  K  I  R  G  K  S  N  N  R  V  K  H  N  A  N  V  Y  V  F  F  K  I  Y  G  F  L  L  C  I  S  F  V  S  F  *  S  L  C  *  L  K  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132281" stop="132413"/>
                    <exon start="134663" stop="134835"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSSYTKRREEERKQITKKIMGSTDSELDSIFQDNKRHRNRLVPIGAFLTAGVLTAGLISFKRGNSQLGQQLMRARVLVQGGTVALMVGSAYYYGDNFKRAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="135900" PGL_stop="139878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135900" e_stop="136025"/>
            <exon e_start="137289" e_stop="137359"/>
            <exon e_start="137537" e_stop="137616"/>
            <exon e_start="138494" e_stop="138608"/>
            <exon e_start="138821" e_stop="138873"/>
            <exon e_start="139303" e_stop="139431"/>
            <exon e_start="139512" e_stop="139878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.957" e_score="0.929"/>
          <exon-intron don_prob="0.199" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.642" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="135900" e_stop="136025" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.957">
            <gDNA_intron_boundary i_start="136026" i_stop="137288" i_length="1263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137289" e_stop="137359" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.199" acc_prob="0.997">
            <gDNA_intron_boundary i_start="137360" i_stop="137536" i_length="177"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="137537" e_stop="137616" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.937" acc_prob="0.999">
            <gDNA_intron_boundary i_start="137617" i_stop="138493" i_length="877"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="138494" e_stop="138608" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="138609" i_stop="138820" i_length="212"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="138821" e_stop="138873" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="138874" i_stop="139302" i_length="429"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="139303" e_stop="139431" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.642">
            <gDNA_intron_boundary i_start="139432" i_stop="139511" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="139512" e_stop="139878" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135900" stop="136025"/>
              <exon start="137289" stop="137359"/>
              <exon start="137537" stop="137616"/>
              <exon start="138494" stop="138608"/>
              <exon start="138821" stop="138873"/>
              <exon start="139303" stop="139431"/>
              <exon start="139512" stop="139878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135901" stop="136025"/>
              <exon start="137289" stop="137359"/>
              <exon start="137537" stop="137616"/>
              <exon start="138494" stop="138608"/>
              <exon start="138821" stop="138873"/>
              <exon start="139303" stop="139431"/>
              <exon start="139512" stop="139523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135978" stop="136025"/>
              <exon start="137289" stop="137359"/>
              <exon start="137537" stop="137616"/>
              <exon start="138494" stop="138608"/>
              <exon start="138821" stop="138873"/>
              <exon start="139303" stop="139431"/>
              <exon start="139512" stop="139642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137289" stop="137359"/>
              <exon start="137537" stop="137616"/>
              <exon start="138494" stop="138608"/>
              <exon start="138821" stop="138873"/>
              <exon start="139303" stop="139431"/>
              <exon start="139512" stop="139578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137305" stop="137359"/>
              <exon start="137537" stop="137616"/>
              <exon start="138494" stop="138608"/>
              <exon start="138821" stop="138873"/>
              <exon start="139303" stop="139431"/>
              <exon start="139512" stop="139852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715198" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGACATGGTAGGTAGTGGGTTACCTTTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAATTTCTCAATTTTTTCAGAAGAAAAAAAAAAAGCCGAAAG : ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT : GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA : GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT : GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG : ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG : AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAAACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTGTTAAAAATTCAGGTTCTTGTTTTAAA</gDNA_template>
            <first_frame> V  T  W  *  V  V  G  Y  L  F  C  *  A  T  A  M  E  A  I  L  K  K  K  T  K  C  E  G  Q  F  L  N  F  F  R  R  K  K  K  S  R  K  :  I  L  R  I  N  S  *  L  K  M  S  S  P  S  K  R  R  D  M  D  V  M  K  L :   M  M  S  D  Y  K  V  E  T  I  N  D  G  I  T  E  F  N  V  E  F  H  G  P  K  E   : S  L  Y  E  G  G  V  W  K  I  R  V  E  L  P  D  A  Y  P  Y  K  S  P  S  I  G  F  L  N  K  I  F  H  P  N  V  D  E  L :   S  G  S  V  C  L  D  V  I  N  Q  S  W  S  P  M  F   : D  L  L  N  V  F  E  V  F  L  P  Q  L  L  L  Y  P  N  P  S  D  P  L  N  G  D  A  A  S  L  M  M  K  D  K  N  Q  Y  E  Q  K  V  K   : E  Y  C  E  R  Y  A  K  K  E  N  V  V  G  T  P  K  D  D  S  D  D  E  I  S  E  E  E  F  S  G  Q  S  E  S  D  D  E  V  V  G  H  A  D  P  *  V  N  K  L  G  S  *  N  G  D  H  V  F  S  S  F  F  S  L  H  V  I  S  D  S  S  S  H  V  N  L  G  A  K  D  S  L  G  T  I  Y  I  T  Y  R  C  V  M  N  L  S  L  C  R  N  S  L  P  Y  G  Q  C  N  L  P  I  Y  V  L  K  I  Q  V  L  V  L   </first_frame>
            <second_frame>  *  H  G  R  *  W  V  T  F  F  V  E  L  Q  P  W  K  L  F  *  R  R  R  Q  S  A  K  D  N  F  S  I  F  S  E  E  K  K  K  A  E  R :   F  *  G  S  I  V  S  *  K  C  L  L  Q  A  K  E  E  I  W  M  L  *  N   : *  *  *  V  I  I  R  W  R  Q  L  M  M  E  L  R  S  S  T  W  N  F  T  A  Q  K  K  :  A  F  M  K  V  E  F  G  K  *  G  S  S  C  Q  M  P  T  L  T  S  L  L  P  S  G  F  S  T  K  Y  S  T  L  M  L  M  S   : C  L  A  L  Y  V  W  M  S  S  I  S  H  G  A  L  C  L  :  I  S  *  T  F  L  R  F  S  C  H  S  F  C  Y  I  R  I  L  R  I  H  *  M  V  M  Q  P  H  *  *  *  K  T  R  I  N  M  S  K  K  *  K  :  S  T  V  N  G  T  Q  R  R  R  M  S  L  A  H  Q  K  M  I  V  M  M  R  L  V  K  R  S  S  V  D  K  A  K  A  M  M  K  L  L  D  M  L  I  L  E  *  I  N  *  D  P  K  M  E  I  M  F  L  V  H  F  S  P  Y  M  *  Y  P  I  R  R  R  M  *  I  *  V  P  K  I  V  *  G  Q  Y  T  *  P  T  D  V  *  *  I  S  V  C  V  E  T  L  Y  L  M  V  N  V  T  Y  Q  Y  M  C  *  K  F  R  F  L  F  *  </second_frame>
            <third_frame>   D  M  V  G  S  G  L  P  F  L  L  S  Y  S  H  G  S  Y  F  E  E  E  D  K  V  R  R  T  I  S  Q  F  F  Q  K  K  K  K  K  P  K   : D  S  E  D  Q  *  L  V  E  N  V  F  S  K  Q  K  K  R  Y  G  C  Y  E  I  :  D  D  E  *  L  *  G  G  D  N  *  *  W  N  Y  G  V  Q  R  G  I  S  R  P  K  R  K :   P  L  *  R  W  S  L  E  N  K  G  R  V  A  R  C  L  P  L  Q  V  S  F  H  R  V  S  Q  Q  N  I  P  P  *  C  *  *  A  :  V  W  L  C  M  F  G  C  H  Q  S  V  M  E  P  Y  V  * :   S  L  K  R  F  *  G  F  P  A  T  A  F  A  I  S  E  S  F  G  S  I  K  W  *  C  S  L  T  D  D  E  R  Q  E  S  I  *  A  K  S  E  R :   V  L  *  T  V  R  K  E  G  E  C  R  W  H  T  K  R  *  *  *  *  *  D  *  *  R  G  V  Q  W  T  K  R  K  R  *  *  S  C  W  T  C  *  S  L  S  E  *  T  R  I  L  K  W  R  S  C  F  *  F  I  F  L  L  T  C  N  I  R  F  V  V  A  C  K  S  R  C  Q  R  *  F  R  D  N  I  H  N  L  Q  M  C  D  E  S  Q  S  V  *  K  L  S  T  L  W  S  M  *  L  T  N  I  C  V  K  N  S  G  S  C  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137310" stop="137359"/>
                    <exon start="137537" stop="137616"/>
                    <exon start="138494" stop="138608"/>
                    <exon start="138821" stop="138873"/>
                    <exon start="139303" stop="139431"/>
                    <exon start="139512" stop="139648"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKMSSPSKRRDMDVMKLMMSDYKVETINDGITEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFLNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNPSDPLNGDAASLMMKDKNQYEQKVKEYCERYAKKENVVGTPKDDSDDEISEEEFSGQSESDDEVVGHADP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139670" stop="139876"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGDHVFSSFFSLHVISDSSSHVNLGAKDSLGTIYITYRCVMNLSLCRNSLPYGQCNLPIYVLKIQVLVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 297 chains have been computed
$ 
$ memory statistics:
$ 842728 bytes spliced alignments in total
$ 165 spliced alignments have been stored
$ 5107 bytes was the average size of a spliced alignment
$ 38168 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1659 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 317 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 02:38:34
-->
