<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 02:44:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317517" ref_strand="+" ref_description="SGN-U317517        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase, putative, nearly identical to protein kinase tousled gi:433052:gb:AAA32874 | chr5:7097910-7103200 FORWARD | Aliases: F22D1.100, F22D1_100(evalue: 6e-114, score=407) genbank/nr: gi|22218298|gb|AAM94621.1| tousled-like protein kinase [Nicotiana glutinosa](evalue: 4e-126, score=454)">
      <seq>gggagtacaacatccacaagactttggtgcaccatcacattgtgcggctttgggacatttttgagatagatcagaacacattttgcactgtgttggagtactgtagtgggaaggaccttgatgcagttctcaaagcaacacctgtgttgccagaaagggaagcaagaatcatcattgtgcaggtttttcaaggccttatttacttaaataaaaagtcacagaggatcatccattatgatctgaagccagggaatgttctatttgatgagcttggtgttgctaaagttaccgattttggtctaagcaagatagtggaagatgatgttggatcccagggtatggaactcacatcccagggagcgggaacgtactggtatctacctcccgaatgctttgagctaagcaagacacctcttatatcctcgagagttgatgtctggtcagctggtattttgttgtaccaaatgctgtttggtaaacgcccctttgggcacgaccaaacacaagagagaatactaagggaggacacaattattaaagcaagaaaggtcgagttccctacaagaccagctgtctctaatgaggcaaaggagtttattcgtcgttgtttaacatataatcaagctgagaggccagatgttttgactatcgcccaagacccttacttaacatacacaaagaaatgatacgaagatgttaatcaccacaacttaggcagagaggttcgtgtctctcgtctatgtaagtggttgctctcctaatgtagagacgaggagtggtgctcggggaattttgtacagttgtaaagcgcatgtaattttttgtccctgtaccttcatctggtccattcccatgttttccatattttggttttctcatctcggaaggtctattatgccatgcttatttcatgttttggaattcgatgtgtgcatcgatgaaatttcatggcgatttaagaaatcaattgtgtagattctacctactagtatgttggtagaggttatacatactttgcttgaggaaaaaaagacattcaagtgaagtggttgatgaaaatatttcatcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="6414" stop="3692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6114" g_stop="6007" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6006" i_stop="5893" i_length="114">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5892" g_stop="5628" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="373" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5627" i_stop="5496" i_length="132">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5495" g_stop="5441" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="428" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5440" i_stop="5216" i_length="225">
            <donor d_prob="0.762" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5215" g_stop="5054" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="590" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5053" i_stop="4477" i_length="577">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4476" g_stop="3992" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="1075" r_length="485" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U317517" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1075</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6114" e_stop="6007"/>
          <exon e_start="5892" e_stop="5628"/>
          <exon e_start="5495" e_stop="5441"/>
          <exon e_start="5215" e_stop="5054"/>
          <exon e_start="4476" e_stop="3992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTACAACATCCACAAGACTTTGGTGCACCATCACATTGTGCGGCTTTGGGACATTTTTGAGATAGATCAGAACACATTTTGCACTGTGTTGGAGTACTGTAGTGGTGTGTTTACTCCCTTTATTGCATAATCAATATGGAACAATTACAATTATGTTCAGTGCAATGAGGTATTTGAGGATTATCTCTCATATTAGTCATAAATGTTTTTGCCTGTAGGGAAGGACCTTGATGCAGTTCTCAAAGCAACACCTGTGTTGCCAGAAAGGGAAGCAAGAATCATCATTGTGCAGGTTTTTCAAGGCCTTATTTACTTAAATAAAAAGTCACAGAGGATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTGGTGAGTGGTAGATTTATGCTGTCATCATGTTTTTAGTGAGGTGCACTGTTCTGAACCTACTTTTGCTGTCATCTCTTGCCTTTGTAAAATTTTTACTAAGGTCCATTATTTCTGGATGTATTGTTTCTATAGGTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGAGTGAGTTCTCCTGCTTTGCTTTAACTTGTTGATAAAGTTAAATAGGACTCCACTGTAGACCAGGAGTACACAACATTTTTTACAAATAGTTTGTTTCTAAAGATCTTGGACTTAATGCTGTGTCTGCATCTTGATTGATGCATATTTAATCCTAAACATGATGAATGAACAGTTAACTATGTGTTTTTATGAACTAAACTCGTAAATTTATATTTATGTAACTAGGTTGATGTCTGGTCAGCTGGTATTTTGTTGTACCAAATGCTGTTTGGTAAACGCCCCTTTGGGCACGACCAAACACAAGAGAGAATACTAAGGGAGGACACAATTATTAAAGCAAGAAAGGTCGAGTTCCCTACAAGACCAGCTGTCTCTAATGAGGCAAAGGTGAGGTTTTCTCCTTGCTATATCTGACGATATTTCTCATCTGACAATGATATGATAAATTGTCCCTATTTTGTTTTCCTTTTTGTGAGCATTATCAAGATAACCCGGAGGCCCAATTCAAAAATAAAAATGAAACCATTGACGTTGCCTACATTTTTAGGTCATTTGATGCCCCAAATGTGGTAAACTTTTGGTCACAGCTATGCTGTTCTTTTACTGATACATAATAATATGGCTTTGATTCAAGTTGAGTACATGCGCCAGTTGGCTCCATGCTTTATCTCAATCCCCATCAACTATTGATTACTAGCATGACAGTAGTCCATACATACCATGACCAGAAACATCTGGAGCATATCAAGATTCAGAATCAGGATACTAGAACTTAACTCTCGTGTCCGATATGACTACTCTGGGCATACTAGCTAATTGATGAAACAAAACTTCATTAAGCAATGTACAAGAAAAGTTAAATTTCAACAATATTTTCAGACTTATTAGGATTTTGTTATATTGCTCTTGCCACTGATTCTTGGATCGCTGTTTTATTGATTCTCTTTTCTATGTGTTTGAGCAGGAGTTTATTCGTCGTTGTTTAACATATAATCAAGCTGAGAGGCCAGATGTTTTGACTATCGCCCAAGACCCTTACTTGACATACACAAAGAAATGATACGAAGATGTTAATCACCACAACTTAGGCAGAGAGGTTCGTGTCTCTCGTCTATGTAAGTGGTTGCTCTCCTAATGTAGAGACGAGGAGTGGTGCTCGGGGAATTTTGTACAGTTGTAAAGCGCATGTAATTTTTTGTCCCTGTACCTTCATCTGGTCCATTACCATGTTTTCCATATTTTGGTTTTCTCATCTCGGAAGGTCTATTATGCCATGCTTATTTCATGTTTTGGAATTCGATGTGTGCATCGATGAAATTTCATGGCGATTTAAGAAATCAATTGTGTAGATTCTACCTACTAGTATGTTGGTAGAGGTTATACATACTTTGCTTGAGGAAAAAAAGACATTCAAGTGAAGTGGTTGATGAAAATATTTCATCATCTAAT</genome_strand>
        <mrna_strand>GGGAGTACAACATCCACAAGACTTTGGTGCACCATCACATTGTGCGGCTTTGGGACATTTTTGAGATAGATCAGAACACATTTTGCACTGTGTTGGAGTACTGTAGTG..................................................................................................................GGAAGGACCTTGATGCAGTTCTCAAAGCAACACCTGTGTTGCCAGAAAGGGAAGCAAGAATCATCATTGTGCAGGTTTTTCAAGGCCTTATTTACTTAAATAAAAAGTCACAGAGGATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTG....................................................................................................................................GTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGA.................................................................................................................................................................................................................................GTTGATGTCTGGTCAGCTGGTATTTTGTTGTACCAAATGCTGTTTGGTAAACGCCCCTTTGGGCACGACCAAACACAAGAGAGAATACTAAGGGAGGACACAATTATTAAAGCAAGAAAGGTCGAGTTCCCTACAAGACCAGCTGTCTCTAATGAGGCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTATTCGTCGTTGTTTAACATATAATCAAGCTGAGAGGCCAGATGTTTTGACTATCGCCCAAGACCCTTACTTAACATACACAAAGAAATGATACGAAGATGTTAATCACCACAACTTAGGCAGAGAGGTTCGTGTCTCTCGTCTATGTAAGTGGTTGCTCTCCTAATGTAGAGACGAGGAGTGGTGCTCGGGGAATTTTGTACAGTTGTAAAGCGCATGTAATTTTTTGTCCCTGTACCTTCATCTGGTCCATTCCCATGTTTTCCATATTTTGGTTTTCTCATCTCGGAAGGTCTATTATGCCATGCTTATTTCATGTTTTGGAATTCGATGTGTGCATCGATGAAATTTCATGGCGATTTAAGAAATCAATTGTGTAGATTCTACCTACTAGTATGTTGGTAGAGGTTATACATACTTTGCTTGAGGAAAAAAAGACATTCAAGTGAAGTGGTTGATGAAAATATTTCATCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323487" ref_strand="+" ref_description="SGN-U323487        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase, putative, nearly identical to protein kinase tousled gi:433052:gb:AAA32874 | chr5:7097910-7103200 FORWARD | Aliases: F22D1.100, F22D1_100(evalue: 3e-120, score=428) genbank/nr: gi|39986093|gb|AAR35033.1| tousled-like kinase 2 [Zea mays](evalue: 3e-125, score=451)">
      <seq>tagagaatacagaaacaagcaaagtggcttcagatgggaatagacgaaaacaaagccgtagtaggggacaaactaattctggtagagggcgtggttcccgagttggtgatcagaccaggttacaagcagtttctgcgtcaaatgatctgttcgagaactcttacaagaagttgcaggatagtttgcctaaagagcaacttgggcataatggacagactgcatcagaagaggagatcactactttacgggcaaaaattgtggctttggaggaagagcttaggaaatcccgtcaagaggccacagattatcagtatcggtgtcaacagctggaaaaggagctgaaggatcttaaagattacgagcagcagacaaagccaaagagaacgaaaataatgtccgagttgctaatatctgtttcaaaagctgagagacaagaggctcggatgaaagtgcgccaggaatcattgagactgggcaatgtgggagtaatcagagctggaaccattatatctgaggcctgggaagatgggcaagcactaaaggacctgaatgctcaacttagaaacttattagaaacaaaagaagctattgaacggcagcgtaaattgttgaagaaacgacaaccagataaaagtgatggaggagatgtggagggaggtttgcaggaagaagattctttcattcaggatgaaatctacaaatctcgtttaactagcatcaaacgagaggaggatatgataatgcgtgagagagatcggtatgaactagagaaaggaaggctcattcgtgaaatgaaacgcatacgtgatgaagacggttctcgttttaacaattttcagattttgaaccaccgatatgccctcttaaaccttcttgggaaaggaggatttagtgaggtctataaggcttttgacttggtagatcatagatatgttgcatgtaagctacatggactaaatgctcagtggagcgaagagaagaagcaaagttatatacgacatgcaatcagggagtacaacatccacaagactttggtgcaccatcacattgtgcggctttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="13724" stop="5761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13424" g_stop="13255" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13254" i_stop="12499" i_length="756">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12498" g_stop="12442" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="227" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12441" i_stop="12245" i_length="197">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12244" g_stop="12137" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="335" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12136" i_stop="10635" i_length="1502">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10634" g_stop="10590" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="380" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10589" i_stop="9798" i_length="792">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9797" g_stop="9685" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="493" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9684" i_stop="8228" i_length="1457">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8227" g_stop="8161" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="560" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8160" i_stop="7660" i_length="501">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7659" g_stop="7593" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="627" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="7592" i_stop="6735" i_length="858">
            <donor d_prob="0.919" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="6734" g_stop="6637" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="725" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="6636" i_stop="6524" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="6523" g_stop="6344" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="905" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="6343" i_stop="6218" i_length="126">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="6217" g_stop="6061" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="906" r_stop="1062" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U323487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1062</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13424" e_stop="13255"/>
          <exon e_start="12498" e_stop="12442"/>
          <exon e_start="12244" e_stop="12137"/>
          <exon e_start="10634" e_stop="10590"/>
          <exon e_start="9797" e_stop="9685"/>
          <exon e_start="8227" e_stop="8161"/>
          <exon e_start="7659" e_stop="7593"/>
          <exon e_start="6734" e_stop="6637"/>
          <exon e_start="6523" e_stop="6344"/>
          <exon e_start="6217" e_stop="6061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAATACAGAAACAAGCAAAGTGGCTTCAGATGGGAATAGACGAAAACAAAGCCGTAGTAGGGGACAAACTAATTCTGGTAGAGGGCGTGGTTCCCGAGTTGGTGATCAGACCAGGTTACAAGCAGTTTCTGCGTCAAATGATCTGTTCGAGAACTCTTACAAGAAGGTGAGTTTTTTCCTGGCATGATTTAAGGTTTTGTTTTAGGATAGCATGATTTAATGTTTGTTTTAGGATTGCATGATTATCAGTAATGATTGAGCTTGAAAGGATAAGTTTGAAAATACAGGCAAATGTTTGTCCAAAAACGACACATGGGAATTGGGAAATTAAAACAAAACAAGAGAAGCTCCTGCTTTATAATGTCAATTCTGAAATGTTTAAAGCTGAATATACATATAAGAGTTTGCGCTGATGATTTCTACTGTTATTCTTTATTGTACCTTTACCAATGTTAAAATCTGGACTCGTGCTGTTAGTTTCCACATTCTATATATTGAAATTAATTTAGTGTTCATTGTTGTAACGTGTTCCCTATTTTCCTAATTCTTCCTTTATACCTTAGCTACCATTGTTTCAGTATATTGTGTGCTCTATTTTGTAGATGAGATCTTTTAACAATGATTTTCTGCTTGATTTAGTTACCCTTGTATACCTTTTCTGTTGTGTAGTTATATAGGACACTAGCGAGTACTTGTGGGCATATTGAGCATGTAATACATATAATCCACTGCAACCCAAAGGCCCTAATACTTAATTTGTGAAAGTCAGTTTGATTTAGAAAGTATCAAATGCAAATAGATTGTAATTTTGTTAGGTAATAGATGCATATCTTGTAACTTTACAATGAAAAGGATGATAGATTGCGTAGAATTGGCAGTTGTTTGTTAGTGGACTAACACATTAAAATTTTGCTTGTTGTAGTTGCAGGATAGTTTGCCTAAAGAGCAACTTGGGCATAATGGACAGACTGCATCAGAAGTATGGCTTTAGTTATAGTTTTCAGATTTCTTCCATACTTTTCTACTGTCAAAAGTGCATTCTAACCTACAATTTCTATCTGGGGGAATTTATGCCATAAAAAGGGTTTACAACTCATGAATTTTATGCAGTCACTCTTTGGTACTATTTATAAATTTCTAATTTGTTGAAATGATGTGGAATGCCCTTGACATTAGGAGGAGATCACTACTTTACGGGCAAAAATTGTGGCTTTGGAGGAAGAGCTTAGGAAATCCCGTCAAGAGGCCACAGATTATCAGTATCGGTGTCAACAGCTGGAAAAGGTACAACTTCTTTAGGTTACCTAGAGTACTGCAAATAATCCCGATATCGAATGATGTACTAATTCAATACTGGATAACAACATATGAATTAGTATGTACATGTGTAAGTTCTCATAAATGCCTGAAAATTTGCTATATCTGGTACCTGTTTAGTTAACCATCTTTTGTTATCACTTGCATGTTCCCAATAATGTTTGCTAATATTGATTTAAAGCTATAACAAGGTGTTTGAAATAAACAATTATGTTTAGTAGGGGAACATAAAATTTGTTACTCTCTCTAGTCCACAGATTAAGAAACCAGTTAACAACATTAACTCAGAGGGTTATTTGACACCCTTTCCCTCTCCTCAACATAAGTTAAGAAGTATTAAAAGACCTTTTAGAAATTTTTTCAGATCATTTACTAGACAAGAGTAAAGTTGGAGAAAATATATACGTTTTTTTAAATCACCTATTTTGGACCAAGTTAGAAAGGCTAGAAAATCACTTACTTTGGACAGGAAAGAATAGCAATTTATCTCATAGTATGCCTCATTTTAAACTCTTAAAATTGTTCTTTATTTGAGTTACAGAAAAGCTTTTGAGTTACAGAAAAGCTTACTAGTCTGAATTTTATTTTGATTTCTAATCCTATATGGTAATTATAGAACATATGATGATAAACTGAATATGAATTCGGATAGAACAAATGTATAAATCGAGGATATTATTAGACACAAATGCTTATTTTATTTAAAATCAATCAACTAGAGGAGTGATTTTGACATTGGAAAACCTTAGGAAGCGAAAAGTTGTTTTTATTAGTTGGTGTTACTTACGCAAGGAGAGGGGTGAAGACGTGGATCATTTTCTCCTATATTGTAGCCTAGCCACGGTGTTATGATGGAATATTTTCAGATGGTTTAGTATTTTATGGGCAATGCCAAGATCTGTAAAGGAGCTGATGTTCAACTGGAAGAGAGGAAGAATGTCGAGAAGACACAAGGTGTGTAATGTAGCTCCACTAGCTTTGATGTGGGTTATTTGGAAGGAGAGAAACATGAGTCATTGAGGGAGTAGAGATGAGTTCTGCTCAGTTGAGGAGTATTCACCGTCCCTTGTGTTCTTTTAGTGCACCCATGTACTACCTGCTTGTATAGAAGCTCAGGTGTCTTTTTTACAGAACCATATCTTTTTGTAGGTTCTCTACTTTTTGGTATACCTCTTGTCTATGGCCAATTTCAGTCTTTCATTCAATGAAACCTTATTTACTTGATCAAAATAAGATAAAATAAAACCAAACAAACATTCTAGATTTATGTTCAAAATTTTAAACTACTAAGCAAAAGTCTGATTACAAATGCAAATAATTCAGAAATTATTATCTATTGAATTACAATCCCTAAATTATAATCTGTATATAACTTGTCTGTGAACCAAATGACCTGTTAGTTGATTTGTCTTTGAATAGAATTTTCAATTGCAACTGACCTTTCAGCATTGCATACTTAAATTATACAGGAGCTGAAGGATCTTAAAGATTACGAGCAGCAGACAAAGCCAAAGGTGTGCTTCATTGGTTATTTTACTTCTTTTCATTGGTCAAGTTCTGTTTCTGCCCTAGAAATAATCGGTAGTGTTTGTATTTAGTTTGGGAGGTTACCTTTGCGAACCGCATGACCAAATATTTGTGGCACTAACTAGCTACATTGGTGTGCTTGTCGCCAAATCAAATTTTTTTGTCAGCTCTGATTGGTACTATATTTGCTTAAGTCATATATCTTTCGAGTTATCATCATATGTCTGAATATGCTATGGAGGAATGTATCTGTTAATATGATTTACCTGATGGAGTAAACCTACAAAGTTGGTGTATTCAGCTTGACCACTTCAGCAGAACAGGCATTATTCAAACTAAAAACCAGAGTTTTCTACATTATGTAGAATTATGGAGTATCGAATAGGCTGTAGTACCAAAGCACTTTGCATATATATGGTATGCATGTATACACACACATTTCGGGCACACCCGTAGCTATTTCATTTTCCTGGCAAAATATTGTTTTCAAACTTAGCTTTGTTGTTTCTAAAATATTTCTTTTTGTTGGTCCATTTGTGGACATATTTACTATCTCATGCAAGTTGTGTGAACATCACTATTTGGCTATCCTGCCAAAATATTGCTGTCAAATTCTGCTTTAGTTGTTTACAATTTATTCTTAGCTGTGTCCCATTGTGTCTGCAATAATCTCGTGTCAGCAAGCAGGTAAAAATACCAAGTTGATATAAAAAGGTTGATATTATACCTGTTTATTGGTATTCCCTCATGGAAATGGTTCATTTTTTTCTTGTCTGCAGAGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACAAGAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAGGTACAGCATTCTTATCAAGGTGTTATTTATAGTGAGCATTTTGCTGCTTGGTCTAGTATATTAAGTAAGTTTAACAGATGAGAAGGCATCAGGAGTGTGAAAAGTAAGAAAAGGTGCAACGAGTTCCCATAATTGTGTGTTCGCAGTTTCCTCTGAGGATCTCTCTTAAGTCGGGATTTATTTACCTTTGTTATGGATAATCTAAATACTGAACATATTGTCAGCCCCAATTAACTTGGAAGTGAGGCTTTATTATTGTTCTTGTAATAATAGTATGGTGACGGATTCCATGGTGCATATTATTTCATATAGCATATTGTAATTGACACAGCAAGAGAGTCAATCTATCTTCTGGACTCTGGATAAGCACTCTAGATAGTGAGGTTTCAGTATAAGTAGAAGTAACACAAGATATTGCACTGAATGTTAGCTTCCATGAAGAGGAATAATGGTGAAGTGCATTTGCCGGGATTGTGATGTCTAAATGCAAAAGATTTAGATGCCTCAGATCAGTCTTGCAGTAAAATGGCATAATAGATTCAAGTGTACTAGATAGAAACACAGTTGGATGAATACTTTTTTGAGGAGATAAAAAAAGGGAATCAAAGTAACATGGCTTAAATAGAAGTTTAATACACGAGTGATATCCAAAATGGGGTTAATGTTGGTCCCTAAGGTCCAACATAGATGAAAGTGTAAAATGTGAATGTTAAAATGGATGTACAAGATTTGAGGAATAATGGTGAGGTGAAATTTGATGGAATTGTGATGTCTAAATGCAAAAATTTTAGATACCTCAGTTCAGTCTTGCAAGAAAATGGCATAATAGATGCGAATGTACATAGAAACAAAAAAGGATGATTACTTATCAAAAGAATTCTGGTGTCTTATGTGATAGAAAGGTGACACTAAGGTAAGTTCTACAGAGCAGTAGTTAGACCAGCTTCGTTGTGCGGGGTGGAGTGTTGGTTAGTCAAGAACTCTCATGTCCAAAAGATGGAAGTTGCGGAATTGAGTATGCTAAGATAGATGTGTAGGGGCTTACTAGCAGAGATATGGCCAGAAATGAAGATATTCAGGTTAAGGTGGAAGTGGCCTCCATATGTCAAGAGGAGATGCATAGACGCCCCAGTGAGGATGTGTGAGAGGTCGACGTTGGAGGGTCTGAGGAGAGGTAGGGTAGGCTAAATAAATATTGGGGAGAGGTGATTAGGCAGAACATGACAAGCCTTAAGCTTACCGTGGACATGAGTCTTAATAGGAGAGTAATTGATTAATTGCTGGGATTTTGTTGGTGATAACTATGTAACAAGTATACTAATAGAACTCTAGATTATTAATAGGCCGTATGCCCATCCTCTAAGTATCAATTTATTTTTCGTGTTATCAAATATCATGATTTGAACCTATTTATTTTTGCGACTGCTGATCTTTTTCTGTTCTTTGGTTAATTGCAGAGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTTGTATGTTCCGTATTTTGGTGGTCTGGCAAGGGACTGCTTGTTTTGCAGTTTCATTTTATGGATATATTAATATATCCATGCTGACAACTAACAGTCACTGCCTGTCCATTTAGCTTTTAAAGTACAATAGAACTTCAGCTTATGTCCTAACAACCATGCCCACAACAAAGGAGAGATTTGAACTAGAAAAAATTAGTATATTGAGAATCTGAGAGTTGAATCAAGAATTTTAATAATAGTTTATATTGCCTGGATCTTTGGACACACAGGAGTTGCTTGTCAAGGAAAGAGGCGTTTTACGTATTAAAAGGAAGACCAAGTAACTTTGCAGACTTACCTGACTTAACTTCAGTTAGATTGTTTGCAAGCTGAATAAATCCAATATGGAAACTGATCCTATATGCTATTTAGTTTTCGGTGTCTCCATATTAATTACACTGCTAAACATTGCTTATATCCTAGATCCAAGAGGTGTTATTGCTAATGAATCTTTTTTTACAGAGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACAACCAGGTGAAGTTTTCCGTTTGAATCATACTTTCTCATGTTCCTTCTCTTAGATAGATTTATGGTGTTATTTTGGTGAATGAGTGGATTATTTTTTTTTTGAAACTGGTAACTTTGTGAATGAGTGGATTTTGTCCCAAAAAATTGTCCAAATCTGTTTGTAAGATCGCTAATATTTCTTTTACTATATTTCTGGTCTTGAATCTGCTCTTCATTAAATGGCTGCATGACATTCCAAACGCAAGTTGTGTGATTTTCAAGTTCACTATCGTCTTAGCAGATGACATTTGAATAAAGCTAGAGTTGTAAGCAATCCATGCTTAATTTGTATGCATCTCTGGCTTGAGTGTTGTTTCAGCAACACTTCACTGGAGGTTCTGTCTTAATATAGTTGCCTCAGTCTTATCAGCTTGTATTTGGTAGTCAACGTGGAAAGAAAGGAGGAACCTTAGATGTCATCAGAACAAGAGCAACACTATCAGAAGATGAAAATGAATTGTCTTGTGTTGTTTCATTTTTGGTGTAAACAGGAGTATATGGAAGATCTAGAATCAGTTATGAATATCTTAGGATCCCCGTAATTTTTGTCATAGGATTGAAGATCTTCTGTTATACTCTATTTAATCTGTAATTAGGAATCTGTAACATGTTGTGGCAGGTTGACTTTTTGGAAATAGAAATACAAATCGTTACCTTCTCAAAAAAAAAAAAAGACTCCCATGTTGGCTTCTTGTTCATGACTGTTTGTCATTAGTTCAGCAGGAATAGCTGTTCATTTGATTTTTCATTTTCTTCGATTGCCCAAAACTATGTTTCTTGTATTATAAAAGGTTACTAACAATAAGGTTTACCCTACCATTGCAGATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGAGTAAGTTTCTCTTCCTTCTCTAAATATTTATCTACCTACCAGTTCTGTCATTTCTGGTGCTTTGTTTCTAAAATACACTCCATGCTTCACACCGTCATATTCATTTTCATTAGGAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGATTTTGAACCACCGATATGCCCTCTTAAACCTTCTTGGGAAAGGAGGATTTAGTGAGGTCTATAAGGTAGGAATCTGAAAGTGGGTGTTAAATATATTTTCATTCACCAGATGACATTGTACACCTCTTTTATGTATTAACATATTGAGAAAAATATCCTTCCATCCACTTCAAATTGCAAAATTCTGGCAGGCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAGCTACATGGACTAAATGCTCAGTGGAGCGAAGAGAAGAAGCAAAGTTATATACGACATGCAATCAGGGAGTACAACATCCACAAGACTTTGGTGCACCATCACATTGTGCGGCTTTGGG</genome_strand>
        <mrna_strand>TAGAGAATACAGAAACAAGCAAAGTGGCTTCAGATGGGAATAGACGAAAACAAAGCCGTAGTAGGGGACAAACTAATTCTGGTAGAGGGCGTGGTTCCCGAGTTGGTGATCAGACCAGGTTACAAGCAGTTTCTGCGTCAAATGATCTGTTCGAGAACTCTTACAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGATAGTTTGCCTAAAGAGCAACTTGGGCATAATGGACAGACTGCATCAGAA.....................................................................................................................................................................................................GAGGAGATCACTACTTTACGGGCAAAAATTGTGGCTTTGGAGGAAGAGCTTAGGAAATCCCGTCAAGAGGCCACAGATTATCAGTATCGGTGTCAACAGCTGGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGAAGGATCTTAAAGATTACGAGCAGCAGACAAAGCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACAAGAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACAACCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGA.................................................................................................................GAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGATTTTGAACCACCGATATGCCCTCTTAAACCTTCTTGGGAAAGGAGGATTTAGTGAGGTCTATAAG..............................................................................................................................GCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAGCTACATGGACTAAATGCTCAGTGGAGCGAAGAGAAGAAGCAAAGTTATATACGACATGCAATCAGGGAGTACAACATCCACAAGACTTTGGTGCACCATCACATTGTGCGGCTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331457" ref_strand="+" ref_description="SGN-U331457        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase, putative, nearly identical to protein kinase tousled gi:433052:gb:AAA32874 | chr5:7097910-7103200 FORWARD | Aliases: F22D1.100, F22D1_100(evalue: 3e-11, score=64.7) genbank/nr: gi|18420352|ref|NP_568405.1| protein kinase, putative [Arabidopsis thaliana] gi|1076385|pir||A49318 protein kinase (EC 2.7.1.37) tousled - Arabidopsis thaliana gi|433052|gb|AAA32874.1| protein kinase(evalue: 1e-09, score=64.7)">
      <seq>tttttttttagtacttccctctctttgattctttccattttcctcaagaaaagggaattaaattaaccctaaatctcctctgtcccatttccttacaagaagttgtcaaaagggttgaattgatttctctgatgctgccgttttcttgattgtacaactctttttgactaaaagggtgtcttagaatcgcttcaaatcatcaaaaagacaccaaagttcacttttttaggttgtttgttgttctgggtcagttgtgaatgatctgatacctttgttgttttttttaagaatggctgatgatatggtcattcattttgcatccaattcttctaaccaatctgaccagtctttgcctacaaaaattgcgaaacttgaggcaagaatggtggggaaagcttcatctgttacatctcaagctaattcctggtcttccccagctatgtttgagaatgttgctgagcctgccaccgtctctagtgattcagatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="16807" stop="15717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16507" g_stop="16017" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U331457" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16507" e_stop="16017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTTTAGTACTTCCCTCTCTTTGATTCTTTCCATTTTCCTCAAGAAAAGGGAATTAAATTAACCCTAAATCTCCTCTGTCCCATTTCCTTACAAGAAGTTGTCAAAAGGGTTGAATTGATTTCTCTGATGCTGCCGTTTTCTTGATTGTACAACTCTTTTTGACTAAAAGGGTGTCTTAGAATCGCTTCAAATCATCAAAAAGACACCAAAGTTCACTTTTTTAGGTTGTTTGTTGTTCTGGGTCAGTTGTGAATGATCTGATACCTTTGTTGTTTTTTTTAAGAATGGCTGATGATATGGTCATTCATTTTGCATCCAATTCTTCTAACCAATCTGACCAGTCTTTGCCTACAAAAATTGCGAAACTTGAGGCAAGAATGGTGGGGAAAGCTTCATCTGTTACATCTCAAGCTAATTCCTGGTCTTCCCCAGCTATGTTTGAGAATGTTGCTGAGCCTGCCACCGTCTCTAGTGATTCAGATGATG</genome_strand>
        <mrna_strand>TTTTTTTTTAGTACTTCCCTCTCTTTGATTCTTTCCATTTTCCTCAAGAAAAGGGAATTAAATTAACCCTAAATCTCCTCTGTCCCATTTCCTTACAAGAAGTTGTCAAAAGGGTTGAATTGATTTCTCTGATGCTGCCGTTTTCTTGATTGTACAACTCTTTTTGACTAAAAGGGTGTCTTAGAATCGCTTCAAATCATCAAAAAGACACCAAAGTTCACTTTTTTAGGTTGTTTGTTGTTCTGGGTCAGTTGTGAATGATCTGATACCTTTGTTGTTTTTTTTAAGAATGGCTGATGATATGGTCATTCATTTTGCATCCAATTCTTCTAACCAATCTGACCAGTCTTTGCCTACAAAAATTGCGAAACTTGAGGCAAGAATGGTGGGGAAAGCTTCATCTGTTACATCTCAAGCTAATTCCTGGTCTTCCCCAGCTATGTTTGAGAATGTTGCTGAGCCTGCCACCGTCTCTAGTGATTCAGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327652" ref_strand="+" ref_description="SGN-U327652        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc knuckle (CCHC-type) family protein, contains Pfam domain, PF00098: Zinc knuckle | chr3:15520609-15523562 FORWARD | Aliases: F22J12.30(evalue: 5e-73, score=187) genbank/nr: gi|15229721|ref|NP_189945.1| expressed protein [Arabidopsis thaliana] gi|9967508|emb|CAC05633.1| putative protein [Arabidopsis thaliana] gi|20466716|gb|AAM20675.1| putative protein [Arabidopsis thaliana] gi|25084296|gb|AAN72214.1| putative protein [Arabidopsis thaliana](evalue: 4e-71, score=187)">
      <seq>aaagaagaagaagaagaaggaaaagaatgttgagattcctgaagaccccgtatcaagtggaatagataaggggtttcagagcttctgtagtgatatgtctatggtggatggaatgaaagaaggtgaaaatgtggttagtatagatatgaatgttgttgacaatgcagctcaacagaatcccgttgatatgtctaatggtgtcgtcctacgaaggcttcttcgggggcccagatactttgatcctccagatagcagttgggggacgtgttataattgtggtgaagagggtcatacgacagtcagttgtacttcagccaaacgcaaaaaaccatgttttgtttgtgggagttttgatcataattctaaacagtgtacaaagggcaaggagtgtttcatttgcaagaaggggcggtcatcgtgctaaggattgccctgaaaaaagccaaagaggatctgagagttcaagaatgtgtttaaaatgtggggattctgggcatgatatgctgtcatgctggaataactattctgctgatgatctaaaggaaatacaatgttacatttgtaagagttttggtcatctttgctgtgcaagctaccccaatggtggtccaagtgaaatatcctgttacagatgtggtctactaggccataccggtttggcatgcacaggatctcgtggggaaactagtggtacatggcatcttagttcttgttttaggtgtggcgaagaagggcattttgcacgagaatgcactaattccaatatagtcaataagtggaatcgggaatcatcaacccccaagaagaaagtgttcaaggaaagaaaggaaaattatgagttccaatctgctcctcatgaatatggcaaggcaagaaaaaagaacacacaatacggagaaggatatgcatcagggtacaatacaaaacatagagctggttggatcaccgatgatcctgaagacttccctcgatccaatggttggagatctccttcaactcctggacataagagagccaggacatccaacttcagttctggtgatcattcttctgtttcttattcatcaagaaagtccaacaggctcgactttaacgattcaaatccttatggatcagttaaacatcatcatcaccataggttttcagcttcgcgatttggcaacagcagtcatgacgggaggagaaattatgaatggtaacagaaaccctttatcatctctttttttttggatgaccaaatctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="22851" stop="18143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22551" g_stop="22503" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22502" i_stop="22368" i_length="135">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22367" g_stop="22314" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="103" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22313" i_stop="20955" i_length="1359">
            <donor d_prob="0.565" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20954" g_stop="20838" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="220" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20837" i_stop="20733" i_length="105">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20732" g_stop="20574" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="379" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20573" i_stop="19671" i_length="903">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19670" g_stop="19509" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="542" r_length="163" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19508" i_stop="19421" i_length="88">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.715" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19420" g_stop="19304" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="659" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19303" i_stop="19188" i_length="116">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19187" g_stop="19080" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="767" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19079" i_stop="18920" i_length="160">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18919" g_stop="18443" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="1245" r_length="478" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U327652" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>1243</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22551" e_stop="22503"/>
          <exon e_start="22367" e_stop="22314"/>
          <exon e_start="20954" e_stop="20838"/>
          <exon e_start="20732" e_stop="20574"/>
          <exon e_start="19670" e_stop="19509"/>
          <exon e_start="19420" e_stop="19304"/>
          <exon e_start="19187" e_stop="19080"/>
          <exon e_start="18919" e_stop="18443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAAGAAGAAGAAGGAAAAGAATGTTGAGATTCCTGAAGACCCCGTAAGTAGTTAAATTTAGTCTGAAAATTGGTGAGATTGTATTGATGATTTTTTATGCATTATTTATTAGCTTAACTAATTGTTTTGATTTGAAGTTGATTGATTTATGTTATTTCTTAACTTTGTTATGCAGCAGGTATCAAGTGGAATAGATAAGGGGTTTCAGAGCTTCTGTAGTGATATGTCTATGGTAATGTGAATTTGCTTCTGCCTTCTGCACATTTAGCTGTTTGGCGTTTTTGTACATTCTATATTCACTGTTGTGTTTTTGCTCATTGTATCACCAATTCAGCATAAATATTCAGTTTAAATGAGCTCTATCTTGCTCAAACCAATAAACAGAGTGGAAGTATAGTTTAAGCCGCTAATAGAAAACTGATAACCAAACTGACACCTATTCACAAAAAAGTCGAAAACCGAAATAACTACGAAAGAAGATAGTTCTCACCATTAACAATGACAAGAGCATACCCAAAGGCTGTTTCGGATAGACCCTTGGATCGATTGACAAGTACTTACCATTAAAAGAAGTTATTGTGTCTTGGGATGATTTGTTTTTAGGAAAAGAAAGGAATGGATGAAATGCTATACCTTTTCCATTCTATTTTTTGAGATGTCCATTTTTAAGATAGCGATCATTTTGTTATGTACTTGTTTTTTGCACAACTTTCAAGAATTTTAATTCATTATACTATTCAGACCTATAAAATGATCCATTCTGCTATCCAGTTGAACTTATATTTCATGTTTTGAATCTATTGTCTTTTAGATTAGCATCCTATAACATACATGTCAAATTACTACCCAGTCAATTGGTGTTAAATAAGTGGACACAGTTTTTAAGATGGTGAACTATAAAGACATAAAACAGTTAAACTGAAAAAGAACCCCTTATTGTAATAATGTTTTTTACTTAAGTTGGATTTAGAGGCACAAGTGGTTACTGAATCGTGATAGAGACTGATAATAATTTGGATAATTGGATTACTAATGTAGCTTCAGGGAGGAACTTTGGTCCTGATGTTTCCTGCTCAAACGAAACCCTTTAAAAATTATTTTTTATAACTAATAGTACCATTTTGATATGATACTCTACACGTTTAGCTCTCAGTACAGTGAGTTTAGAGAATTCTGCCACCCTAACAAAGAAGGTCAACCAAAAATTTGGAACATCTTGTTTGTTCCATATGTCGCTCCTCTTCATCGCATTTTTGTTCCATATGTCACTCCTTTTCAGTCTTTCTATTGTATACCGATGATGGTTGTTCTCTGATTATTTTAATAATCACAGAACATGTGAATAAAGCTTATGTAAATTGTAATCCCATTCCCTTGAAACCCGAAGTAAGTCTTTAAGAGACATTAATCTTTTGTCAACAAAAAATCATTTACACAAAGTTAGTTTAATCTTCCTCTTCTACAATGATTTGCAAGGTTAAATCTGCATTTGTTTTCATATTTAATTTGGAAATCTGGAAAATGAATTCCTAATGGTAGAAAAAATGAGCTTGATCACTGATGTGTTCTTTTATCTTCTTGACTGTTTTAGGTGGATGGAATGAAAGAAGGTGAAAATGTGGTTAGTATAGATATGAATGTTGTTGACAATGCAGCTCAACAGAATCCCGTTGATATGTCTAATGGTGTCGTCCTACGAAGGCTTCTTGTGAGTTGAAGTAATATGATTTGAACTGTTGTTTTTTACAAATCCAAACAATCTCTTGAATGTCTTAGCTGGTCTATAACTTTATTATTCATTCTGTGATCTCAGCGGGGGCCCAGATACTTTGATCCTCCAGATAGCAGTTGGGGGACGTGTTATAATTGTGGTGAAGAGGGTCATACGACAGTCAGTTGTACTTCAGCCAAACGCAAAAAACCATGTTTTGTTTGTGGGAGTTTTGATCATAATTCTAAACAGTGTACAAAGGTTCGTGGTTGAAATAGCTACCATTATTATGTGTCCCCTTTGTGATAATTTCATCTTGTTAATCTCCTCACAATTGTTGAATTTGATAAGTGGGAAGTTTGGTCTTCTGTTTCATTTTTTTGATTGACTAACATTGTGAGTCAAGCAGTTGTGACACGCACTTCTCTGCAATAAACAAACGACATCACCACCAAGTCAATGGTATTAAGTATAGAGGGTCTTTATATGTTTGTCGACTTCAAATTTGGATCTTTGGTGAGAATTAGTTATACTTCCTACTAAAACAATGTCTGATGTGAATGAATGTCAACGAAGCCATTCATATAACTGTGTTAATCCTTGGCAATAGAGTTTCACAAAAAGAGGGGTAAGACCAACTATGCTGAACCAGAATGCTAACTGCTAATTTCTAAACTGCCGCTTCTGACCAAACATTACAACTAGATCATAAGTTCTGTCTTTTCCACAGTCCTCAAAGCAACTTTATTTTTCATAGTTCAGCATTGGCCTCTCCCTTATCTGAAACGTTATTCATATCAACTCGCCTAGTCCCCCTGTTTTCTTAGCCGGGTATGTTCATCAGTAGAACCAGTGAAGTATATGATGATTGTGTTCTACTTAGATACTGTTGTAAGTTGTAGAATCATAGAAGTGCATCTGTTGCATGACTGCACATATTTTTTCTGTGTTTAATCTTTTTGGTAGGTTCGGAAGTCATTGGTAGGTTCTTTGCTAACCATAGTATATTGCACAGTAGTATTCTGAATACCCGAGAGGAGTGGCTATATGAAATTAGGTTTATCCTGGAATTTGAAACAAACATATTATCTATGCCTTAAAATTCCAATCCTATTTCAGTTTTGGTCTTAGGAGTATACATCTCAGTCTGCTGATTATGAACAGGGCAAGGAGTGTTTCATTTGCAAGAA-GGGCGGTCATCGTGCTAAGGATTGCCCTGAAAAAAGCCAAGGAGGATCTGAGAGTTCAAGAATGTGTTTAAAATGTGGGGATTCTGGGCATGATATGCTGTCATGCTGGAATAACTATTCTGCTGATGATCTAAAGGTATTGCTGAAGAAACTTTTAACTTGAAATTGATTTTTTTTTTCGTGCTTAATCATCACTTTTCCTGTTTTCATCTTGACCTCTACAGGAAATACAATGTTACATTTGTAAGAGTTTTGGTCATCTTTGCTGTGCAAGCTACCCCAATGGTGGTCCAAGTGAAATATCCTGTTACAGATGTGGTCTACTAGGCCATACCGGTTTGGTAAGTAGTTGTACATGAAACGTCACGACTCCTGTGTGTGTGGGGTCTGTGTTTCTCTTGTCTTGTTCAGGAATCCTTTTAATGCTGCAATTTCAACTTGCACATGTTCAATGCAGGCATGCACAGGATCTCGTGGGGAAACTAGTGGTACATGGCATCTTAGTTCTTGTTTTAGGTGTGGCGAAGAAGGGCATTTTGCACGAGAATGCACTAATTCCAATATAGTGAGTTATATATCTGTGATTGACGACTGTCTTTTGCTCTCCCTTCCATCCCCTTTTCTCCAAATTGTCTTTCTCTTCCTTCATAGCTCATTTCTTGCTTCCTACTCTAAATCTCTTCGTTGCAATTTTACCTTATTGTGTGTTTATTGTATGTCAAAAGGTCAATAAGTGGAATCGGGAATCATCAACCCCCAAGAAGAAAGTGTTCAAGGAAAGAAAGGAAAATTATGAGTTCCAATCTGCTCCTCATGAATATGGCAAGGCAAGAAAAAAGAACACACAATACGGAGAAGGATATGCATCAGGGTACAATACAAAACATAGAGCTGGTTGGATCACCGATGATTCTGAAGACTTCCCTCAATCCAATGGTTGGAGATCTCCTTCAACTCCTGGACATAAGAGAGCCAGGACATCCAACTTCGGTTCTGGTGATCATTCTTCTGTTTCTTATTCATCTAGAAAGTCCAACAGGCTCGACTTTAACGATTCAACTCCTTATGGATCAGTCAAACATCATAATCACCATAGGTTTTCAGCTTCGCGATTTGGCAACAGTAGTCATGATGGGAGGAGAAATTATGAATGGTAACAGAAACCCTTTATCATCTC-TTTTTTTTGGATGACCAAATCTCCA</genome_strand>
        <mrna_strand>AAAGAAGAAGAAGAAGAAGGAAAAGAATGTTGAGATTCCTGAAGACCCC.......................................................................................................................................GTATCAAGTGGAATAGATAAGGGGTTTCAGAGCTTCTGTAGTGATATGTCTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATGGAATGAAAGAAGGTGAAAATGTGGTTAGTATAGATATGAATGTTGTTGACAATGCAGCTCAACAGAATCCCGTTGATATGTCTAATGGTGTCGTCCTACGAAGGCTTCTT.........................................................................................................CGGGGGCCCAGATACTTTGATCCTCCAGATAGCAGTTGGGGGACGTGTTATAATTGTGGTGAAGAGGGTCATACGACAGTCAGTTGTACTTCAGCCAAACGCAAAAAACCATGTTTTGTTTGTGGGAGTTTTGATCATAATTCTAAACAGTGTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGGAGTGTTTCATTTGCAAGAAGGGGCGGTCATCGTGCTAAGGATTGCCCTGAAAAAAGCCAAAGAGGATCTGAGAGTTCAAGAATGTGTTTAAAATGTGGGGATTCTGGGCATGATATGCTGTCATGCTGGAATAACTATTCTGCTGATGATCTAAAG........................................................................................GAAATACAATGTTACATTTGTAAGAGTTTTGGTCATCTTTGCTGTGCAAGCTACCCCAATGGTGGTCCAAGTGAAATATCCTGTTACAGATGTGGTCTACTAGGCCATACCGGTTTG....................................................................................................................GCATGCACAGGATCTCGTGGGGAAACTAGTGGTACATGGCATCTTAGTTCTTGTTTTAGGTGTGGCGAAGAAGGGCATTTTGCACGAGAATGCACTAATTCCAATATA................................................................................................................................................................GTCAATAAGTGGAATCGGGAATCATCAACCCCCAAGAAGAAAGTGTTCAAGGAAAGAAAGGAAAATTATGAGTTCCAATCTGCTCCTCATGAATATGGCAAGGCAAGAAAAAAGAACACACAATACGGAGAAGGATATGCATCAGGGTACAATACAAAACATAGAGCTGGTTGGATCACCGATGATCCTGAAGACTTCCCTCGATCCAATGGTTGGAGATCTCCTTCAACTCCTGGACATAAGAGAGCCAGGACATCCAACTTCAGTTCTGGTGATCATTCTTCTGTTTCTTATTCATCAAGAAAGTCCAACAGGCTCGACTTTAACGATTCAAATCCTTATGGATCAGTTAAACATCATCATCACCATAGGTTTTCAGCTTCGCGATTTGGCAACAGCAGTCATGACGGGAGGAGAAATTATGAATGGTAACAGAAACCCTTTATCATCTCTTTTTTTTTGGATGACCAAATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332290" ref_strand="+" ref_description="SGN-U332290        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tcgattagaatttcactgtaaaacaatgggtaagcgagagaagaaggagaagaaatcagcaaaatcagaagttatggaggtagaggaattatcagaggtaaaaatgaagaaatctaagagagtgcggagtaagaaaagaaaagaagaagatgaagatgatgatgttgaagctaatgaagatctcagcttgaaaattgttgagaaagctttgcttcgtgggtgctcaactgaaaatggcgaagttgtggttgttacagatttgaagaagaaagagaaagagaaagagaaagagaaagagacccagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="23157" stop="22259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22857" g_stop="22537" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U332290" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22857" e_stop="22537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTAGAATTTCACTGTAAAACAATGGGTAAGCGAGAGAAGAAGGAGAAGAAATCAGCAAAATCAGAAGTTATGGAGGTAGAGGAATTATCAGAGGTAAAAATGAAGAAATCTAAGAGAGTGCGGAGTAAGAAAAGAAAAGAAGAAGATGAAGATGATGATGTTGAAGCTAATGAAGATCTCAGCTTGAAAATTGTTGAGAAAGCTTTGCTTCGTGGGTGCTCAACTGAAAATGGCGAAGTTGTGGTTGTTACAGATTTGAAGAAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAAAGAAGAAGAAGAA</genome_strand>
        <mrna_strand>TCGATTAGAATTTCACTGTAAAACAATGGGTAAGCGAGAGAAGAAGGAGAAGAAATCAGCAAAATCAGAAGTTATGGAGGTAGAGGAATTATCAGAGGTAAAAATGAAGAAATCTAAGAGAGTGCGGAGTAAGAAAAGAAAAGAAGAAGATGAAGATGATGATGTTGAAGCTAATGAAGATCTCAGCTTGAAAATTGTTGAGAAAGCTTTGCTTCGTGGGTGCTCAACTGAAAATGGCGAAGTTGTGGTTGTTACAGATTTGAAGAAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGACCCAGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340333" ref_strand="+" ref_description="SGN-U340333        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G06600.2 | Symbol: None | ubiquitin-specific protease 12 (UBP12), almost identical to ubiquitin-specific protease 12 GI:11993471 (Arabidopsis thaliana), one amino acid difference | chr5:2019108-2027946 REVERSE | Aliases: None (evalue: 1e-103, score=357) genbank/nr: gi|77551602|gb|ABA94399.1| ubiquitin-specific protease UBP12, putative [Oryza sativa (japonica cultivar-group)] (evalue: 2e-104, score=363)">
      <seq>ttttcttctcaaatttacagcaaaattagctcaaaattctcttcaatttcttcatcgaatgaccataatgactcctgctcctaccgatgaagaggaggagatgcttgttccgcgttcagatttggtatttgaaggacctcagcctatggaagcacaagcagaaaccggcaatgatgtggaaaagcagccaccagaggatcctcaaacttcaaggtttacttggaagatagataacttctctaggttgaatgtaaagaaactatactctgacccttttgttgtcggtggctataaatggcggattttaatttttcccaaggggaacaatgttgattacctatccatgtatctggatgttgctgattcagctaatttaccttacgggtggagtagatatgcccagttcaacttgtcaattgttaaccaaattcataacaagtactccatcagaaaagagacacaacaccaattcaatgccagagaaagtgattggggtttcacatcctttatgccacttggtgaactatatgatccaaacaaaggttatcttgttgatgatacatgtgttgttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="24898" stop="29584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25198" g_stop="25285" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25286" i_stop="25621" i_length="336">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25622" g_stop="25685" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="152" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25686" i_stop="26964" i_length="1279">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26965" g_stop="27109" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="297" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27110" i_stop="27200" i_length="91">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27201" g_stop="27358" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="455" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27359" i_stop="29163" i_length="1805">
            <donor d_prob="0.178" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29164" g_stop="29284" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="576" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U340333" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25198" e_stop="25285"/>
          <exon e_start="25622" e_stop="25685"/>
          <exon e_start="26965" e_stop="27109"/>
          <exon e_start="27201" e_stop="27358"/>
          <exon e_start="29164" e_stop="29284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTCAAATTTACAGCAAAATTAGCTCAAAATTCTCTTCAATTTCTTCATCGAATGACCATAATGACTCCTGCTCCTACCGATGTAAGTCTCACTATTTCTTGACCTCTGTATGATTTTATAGTCAGTACACACAGACATGTTCGTTTGGTTGTTTCAATTTTTTTTTTTGAGTTTTAATTTGTTTTGTGTGTTTAAAATCAGTTTAGGGTTTGTTTCTGCTTGTGGGTTTTTGTTGATTTCAGTTTTTAGTTTATGTTTATTGTTTTTATACTGTATACAGACACATAGACAGGTTCAATTGGCGGATTTTCAGTTTTTATTGGAGTTTTAGTTTTGTGTTTCAGAATCGATTAGGGTGGTGTTTTTGCTTCTGGGTTTTTGTTGATTTCGTTTTTTTTACTTATGTTGGGGTAGCAGGAAGAGGAGGAGATGCTTGTTCCGCGTTCAGATTTGGTATTTGAAGGACCTCAGCCTATGGAAGGTAAAGTTTGAAGCTTTAATTTCTGGTTTGTTTTAGTTTTTTTCAACTATGACATTTCTAGGTTTTGGTGACACTGTACTGGGATTTAATGGTTATATTAGGTTAAAACTGTTGGCAAATAGAGAAATGCAGGGGAAAAGGAAGAAAGAAGGAAGCAATTTGTTTGGAATGATTCTAAGCGATTGAGGGAATATTTTCTTTAATAATTGCGGTGTCTGGGCTTGTTGTTCACCTCAACTAATTTCATGGACTTAGTCCAATAAAGGCTAAGACAGATGGAAAGAGATCACCTAGTGTTTTCATCAGCTATTTGGGATTTGAATCTGAGGCCTCATAGTGCTTGATTCACTCCATGGATCACTAGGCCACACTCTTTGATTAGCTGAGGGGATAGTTTTAGTAGGAAATTCTGATTCCACCTAGTTTTTTTTTTATGGATATTGAAGAACTCTAGGTGAATCCCACATCTACGAAGAGATGTTGGGTATAAGAAAACAAGTCTTAAGACCCTACATGCCTGTTTCAAACCCGTGCAGGCTTAGGTCCTAAGCGGACAATATCACTATTGGGCTGGGCTGTGACGTGTATGAAACACCATAGGTGAATCCCACATCAACAAAACATGGGAGAGATGCTGGGTATATAAGGAAGCAAGCCTTGGACCCTAATGACATATTTTAGACCGTGCGGGCGAAGGGTCAAAGGGTACAATATCACTAGTGGGCTGGGATGTGATTGCTGTACATGGTTGGTAATGGTGAAATCTTGTCCTAACAGAATTTAAGGGTTATGGAGATGGCAGATTTCCTAGTATCTGTTTTGTTTGCGGGTTGTTGTATCAATATGTGCCGGAATATATGATTTCAGTTCTTATTTTGTATGATCATTGTGTTTTCACTATTTTTCTGATGGCGTGTTTGATGAATGACGCGTGGGAAAATTGAAGATTCTTTACCCTTTCCAGTATTTGTTTAAAGTACCAGATCCACTTTGTAGTTTCCGGGGTAACTTAACTTTTCTGTTACATCTCTAGTGTCCTTGGTTATCTATCTACCGAAGTGGTGTGGAAAATGCTCATGTAGCATATGGGCATTTGTTCCATGAATCTGTATTTGCAGATATAGGGACCGGGAAAGGATTACAGACTGCAGCTTAACCATAACCTGCTAAATTTTATGATATTGAGCCATCAGTTGATTGTTCACTATATATTATGCTGATCTCTTGAGAATGGACTTTCAAGTTTTTTTCTAATAGTTCCTCCTTAATTGCTTGTTAGCACAAGCAGAAACCGGCAATGATGTGGAAAAGCAGCCACCAGAGGATCCTCAAACTTCAAGGTTTACTTGGAAGATAGATAACTTCTCTAGGTTGAATGTAAAGAAACTATACTCTGACCCTTTTGTTGTCGGTGGCTATAAATGGTAATGTTAATCTCTCCATGCTACTTGCAAGTTTAAAGCTCTACTTCCATAATCCCATAATGACCTCTTTTCTGCTGTTTTGTTGTGCCAGGCGGATTTTAATTTTTCCCAAGGGGAACAATGTTGATTACCTATCCATGTATCTGGATGTTGCTGATTCAGCTAATTTACCTTACGGGTGGAGTAGATATGCCCAGTTCAACTTGTCAATTGTTAACCAAATTCATAACAAGTACTCCATCAGAAAAGGTACTTCAGTAAGAATCCAAAATTCTGATGATCTCGCTGATAATAGAAAACCAGTTTCAGTTGTTTACAATATGGTGTGCTTGTGCCAATGTTCTTGTATTCTTTACTATGACCTTGGCTGTTGGTTACCTTGTATACCATAAAAGAGGTGATATTTTATGCTCTTCAAAACAGTGTCCACCAGAATAATTTGGTTTTCGGTCTTTTGGCTATACTTTGTTGAGGCGGCAAACATCATATTGTCTTTCTACTATCGATTCATTTTAATGACAAGTCTGAATACGTTTAGCCATGTATTTGGTGCAACCTGATCAGCTCAGTGCATCCCCCCTCCCTCCTAAAAACGGAATTACAATAGAAAACCTTGTTTCCATAGTCGTGGTCAGTAGCTGCTAGACCTGTTTGTTGAGGATCTCTTGACTAACATTTGTTAATAGGAAGTTATAAGTTTTTCTAAGTTATTCCTTAAAAATTTAAATATCAAGTTTTTTTATTCTAATGTACTCTTGCCTGACAATTTCTGTTTTCATTTTCTGCTGCTTTGTGGATTGCTGCAATTTTTGCCTGCTGTTTTTAATTCTATTGTGTAGAGCAGTGTACCCGATTTGGTCCTCCTCCTTCAGAGGTTAAAATAAGCTTTCTGTTGATAGGAAGAGAAGAATAGTGTAACCAATTCTTGAACAGAAATAATGTCTGTTGGTTCTTCGTAAAGAACCTAAGAAATGAGAAGTCAAGAGAACGCAATGAAGCAAAACTACCAAATGCATACCCAAGCTAGTTTTGTTACTCTCTTAGCATTTTGCCTCTGTATTCGAAAGCATGTTAGTGCAACCATAAGTTCTTCCTTTGCATTTATGTGCAAGTTAATACCAAAAAAAAAACCGGGCCCTTGATTCAGTGGGACATATTTGGTCGAATTTCTTGAAGTTATGCTGTTTTGAGATAGTACAACAACTACACCTCAGTTCCCAACAAGTAAGGGTTGGCTATATGAGTCCTCACATGTTTTTCCATTAACGCGAACTCATTCATCATCGTACTAAATACAAATAAAAGTGAAAAGTAATAAATATAAATTAAGAAAATAATTATAGCTGTAACATTTCAAAATATTGTTATAGGCATATAAATCTATGATGGGCCAAAATACTCCCAGAAAAATTAAAGTTTTAAAATCAATGTACTATCAAGACTAATACCTCATTACTGGGGATTGTATACTTTGTTAGGTCTTGATTCCTTTTTCTACTGATTGAAGCTATATTACGTGCTGAACAAATCTCTTCTTTGTTTGGAGTCGATTGATTCCTCAATCAAGTCCTAACTTGAAGTATATACCAAGAAGAAGAAAAATTGTTTGGGTTCGAGGCAAGGTCATTCTCCCCTGTTGTGAAGTTCTGCTCTAGTATCAGAGATAGGATCAACTGTAGTATTGACTCATGCAAATCTGCTTCTCTCAAGTTAAGTTCTATCACTCTTAGTGAGAAAAAATAAGTTGGGAAGGCACGTTGCCTTTATCTTTCCAAGTGTTCCGTAATAATAGTATAGTGGAAAAATTCCACACTTGCACAATAGATGCATGATCTCTAGTTATTTTGAGTTTGAGCTCTTACGTAGTATATGATTGTTTATAATGTAAATGTAGTCAGAGTTAAATATTTAAATTATTCTTTTTTGGCTAGTTCCAGTTTGTGATTTTATTATTGTCAGGCTGTTTCAGATAAGCCCACAACTATTTGAAACTGTCATAGTTGCATTTATGGTCTAGTAGATTTATATAAATGTTATTCTCTCATGCTTTATAGAGACACAACACCAATTCAATGCCAGAGAAAGTGATTGGGGTTTCACATCCTTTATGCCACTTGGTGAACTATATGATCCAAACAAAGGTTATCTTGTTGATGATACATGTGTTGTTGATGC</genome_strand>
        <mrna_strand>TTTTCTTCTCAAATTTACAGCAAAATTAGCTCAAAATTCTCTTCAATTTCTTCATCGAATGACCATAATGACTCCTGCTCCTACCGAT................................................................................................................................................................................................................................................................................................................................................GAAGAGGAGGAGATGCTTGTTCCGCGTTCAGATTTGGTATTTGAAGGACCTCAGCCTATGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAGCAGAAACCGGCAATGATGTGGAAAAGCAGCCACCAGAGGATCCTCAAACTTCAAGGTTTACTTGGAAGATAGATAACTTCTCTAGGTTGAATGTAAAGAAACTATACTCTGACCCTTTTGTTGTCGGTGGCTATAAATG...........................................................................................GCGGATTTTAATTTTTCCCAAGGGGAACAATGTTGATTACCTATCCATGTATCTGGATGTTGCTGATTCAGCTAATTTACCTTACGGGTGGAGTAGATATGCCCAGTTCAACTTGTCAATTGTTAACCAAATTCATAACAAGTACTCCATCAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACAACACCAATTCAATGCCAGAGAAAGTGATTGGGGTTTCACATCCTTTATGCCACTTGGTGAACTATATGATCCAAACAAAGGTTATCTTGTTGATGATACATGTGTTGTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346403" ref_strand="+" ref_description="SGN-U346403        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G06600.2 | Symbol: None | ubiquitin-specific protease 12 (UBP12), almost identical to ubiquitin-specific protease 12 GI:11993471 (Arabidopsis thaliana), one amino acid difference | chr5:2019108-2027946 REVERSE | Aliases: None (evalue: 2e-107, score=385) genbank/nr: gi|11993471|gb|AAG42754.1| ubiquitin-specific protease 12 [Arabidopsis thaliana](evalue: 1e-105, score=385)">
      <seq>ggatgggacacatatgattctttcttgcagcatgatgtgcaagaactcaatcgtgttctctgtgaaaagcttgaagaaaaaatgaagggtactgttgtggaaggcactatacagcagttattcgaagggcaccatatgaactatattgagtgcatcaatgtggactacaaatctacgagaaaggagtcattttatgatcttcagcttgatgtcaaagggtgtgctgatgtttatgcttcgtttgataaatatgttgaagttgaacgtcttgagggcgataacaagtaccatgccgaacaatatggtttgcaggatgctaagaagggtgtcttattcatggatttcccccctgtcctgcagcttcagttaaagcgctttgaatatgatttttcacgggacactatggtaaagataaatgacaggtatgagttccctctgcaactcgatctagatagagagaatggtaaatacttgtcgcctgaggcagatggaagtgtcagaaacctttacacacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="29345" stop="34016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29645" g_stop="29731" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29732" i_stop="29806" i_length="75">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29807" g_stop="29915" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="196" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29916" i_stop="30006" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30007" g_stop="30122" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="312" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30123" i_stop="30336" i_length="214">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30337" g_stop="30435" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="411" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30436" i_stop="33610" i_length="3175">
            <donor d_prob="0.714" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33611" g_stop="33716" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="517" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U346403" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29645" e_stop="29731"/>
          <exon e_start="29807" e_stop="29915"/>
          <exon e_start="30007" e_stop="30122"/>
          <exon e_start="30337" e_stop="30435"/>
          <exon e_start="33611" e_stop="33716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGGGACACATATGATTCTTTCTTGCAGCATGATGTGCAAGAACTCAATCGTGTTCTCTGTGAAAAGCTTGAAGAAAAAATGAAGGTAAATCAAACTTCAGTTGGTTGTTGGTGCTTCAGTAATTTCTAATTGACATGATCACTCTTTTTCTGCTGTTAGGGTACTGTTGTGGAAGGCACTATACAGCAGTTATTCGAAGGGCACCATATGAACTATATTGAGTGCATCAATGTGGACTACAAATCTACGAGAAAGGAGTCATTTTATGGTTTAGTAGATCAGACAAGCTCCTGATGTTGTCTTCTATAGCCATTTAAGTTTTGCACCTTATGGTGTTCTGTATATATTGTGTGTGGCAGATCTTCAGCTTGATGTCAAAGGGTGTGCTGATGTTTATGCTTCGTTTGATAAATATGTTGAAGTTGAACGTCTTGAGGGCGATAACAAGTACCATGCCGAACAATATGGTTTGCAGGTAACATAGCACACTAGTCTTGCAGTTCCAAGTGCTCCTTGAGTTACTCCGGGCAAAGTTCACATAAGTTTCTATAAAATTTAGCTGCAAGGCTGCAACTACATTTAACGTTTTCTCGTATTTCTTTTTATCTTCTCCTGTTGGTTGATCTATTGAAGGTTTAGGCTATTTTTCCTAGGTTCACTTATCTAATGTTAATATTTGGTTGTTTCAGGATGCTAAGAAGGGTGTCTTATTCATGGATTTCCCCCCTGTCCTGCAGCTTCAGTTAAAGCGCTTTGAATATGATTTTTCACGGGACACTATGGTAAAGGTCAGTTTCAACAAGGCCCAGCAAATTTCCAGTATTTTAATGGTCCACAATATCTAATTTTCATGCTGAAGACTATTCTTCAGCTCTAATGCCCTGCAATTGGAAGCATGGAGTGTACACAGTTTTAGAATTCAAACATAAGGTTACAACAACAGAAGAAGACTGTCAAATCACAAAATCAGCCCAAAATAATGGGAAAACATATTAGGACTTCATCAGAGCTTGAAATTCAGTTGGAAGATCACAAAATTAAAACAAAATTTGATTGGTCAGTCTGATGGATTTATCTTCTAATGAAGCAATTTAGGATTTTCTCATCTAAAAAGCAAGCCGGTAGCAAGATATCTTTAGTTATATCGCAAAACAGTTTTTAGTAAAAGTTCTGTAGATAATGGTTTAGATTTCTGTAAGAATAGTGAAATAGATTAGTTTTAATCGTTCATTTCCATTTATATGATGACTCTCGCATGAAAATGATGGATCCATTCAGATCTTTCTTATTCATTTTCAAGAAGTTTTGACATATAAAGCTAGTTCTCGTTCTCGACATCAGTAGGTTAACTACGTTTGCTTTGTTTAATCACAGAACCATAGCATGTTTTATGAAATCTAGAGAAAAGATGTACTCATTGATTGCCAGTACTTTCATCTTGATGTTAGTTTTACTTAATGATGCTTGAAGAGTATACCTCTGGGGCGCTTATGTATCATCAAAGGTAGTATTCTTCTGTTTATCCTCAAGAGATTAAGTAGCTTATCGTCATCAAAAAGGATAAATCAGCTTATATTTTGTGCTGTGAAGTGTTAGTAATGCCTTTATTTAGTACAAGTTTTGCAGTATTCAGTTGTTACCCTCAATGGTTTTCACAATTAGGGTAAATGGTTGCGAAGGTTAGAAAGATAGAAGCTATTGAGTTGGGGGTTCTTAAAGAGATGTAGAAAGAGTTACGGTATCAGTTCAGGTACATAACCTGCTCTTTGCAGCCTCTGTATGGTAAAGGAAACCAAAAGAAGGATAGAAGGATAATCCTGCTGCTTATGTGCAGGCTCAAGTTGGAAAAAAAATAAATAGGAAGGAATATTGGGCTGCAGCATTGATTGTGGGAAGTGAGTTGAGAAGAAATCTTTTTACTACCAAAGGGAAAATAACCAGTGAACATTAAGCTTGCATTTGGACATGCGATGTGAAGTCATGATTCAAATCAACGTTTGTATATGCTATTTTGATCATGATTTCATATCCCCTATTCTCCAAAAAACATGATTTGGGGATTTTAAATCATGATTTCATTTTTTTAAAATGTAGCACTTGGCCCATAAGTGTATATTTTGTAAAAGAAAACATGTCATTTTATATTTTACATAAATGGACTCGTGCTCGGGGTGAAGAGATTGTCGTACCATGTGAAATGATTATATTAAAGAATTACTAGTTACTACCTTTGTTGACTAGTGGGAACTTTATAAAATTATAACTATTTGAAAGTTTGTTATCACAAACATCTATTTATAAAAAGGAACATGGAGATATGGGGTAATTGATAGTTTTCTCAACTTTGTGGGGTTTTCATGTTTATGTGAAAAAATGTCTTTAAGAATTCAAATTGCATGTCCCAACAAAACTTCAACTTAAAATCAATATGATTTCAGATCACGATTCCATATCACATGTACAAAACTTCAACTTAAAATCAGTCTGATTTCAGATCATGATTCCATATCACATGTCCAGACGGGGCCCTATGTTAAGCGGAAAAAGAAAAGCAAATTATTGTGGCACTGCTGTTTATGTATATCAAATATGCTGTAGAAATTCATATAACACAAACCTGATTACATTAGGGTTTCCTTGTTCATTTTTTTTCAAAGTTCATTCGCCTATAAAACTAGGTCTAAACCTTCCTATTTGTTGAACCTATTAATAATAATTTGAACTCTGATCATTATCACTTAATCAACTAGTGTCAATCCCAGGGTAGTTGAGTCACCTGTGCATAATTAATGGTGGATTTTTTTAAAATTGTGGGTTTGACAGCTAGTTGCTCGTAGTTTCCAGACAATTAATAGAAATTTGATGGCGTTTTTTCCAAACTTAACTATGACTAGTGTTTTGGAAGTCGAAAGGCCATAAAAGGCGACAAGGGTCTGCTTTGCCATGAGGCGAGGCGAACGGCGAGGCGCTCGCTTTTTTGAAGTGTGACACCATTTAATACCAAAAAATTAAAATATTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAATTCAAAAAGTAAAAATAGATAGTACATACCAAAAGTCTAGAACTTGAATGAGAAAGAAAAGAGCAAAAGTCAAAACAAAGGTAGAAGTGACTCAAGTCTAAAGAAGAAAAGAAGAAATATGTATTATGTTAACTTTCTCAAAAAAAGAAGAAATATGTGTTGGTTAGACTTTGGAGTAACCAGAAACGCTTGGCTAGTTGCCGGAGGAGTCTAGTCAAAAATCTTAAAATTACCTTTTAACTTTTAAAACCCTAGATTGATCACCTTTTTTTTAAAGAAAATACAAAACCGACACCTTTCTAGCCTTTCTCGCCCCTTGCCTCTAGCCTTTCGTCGTCATAGCGTCGCCTTTTGAAGATCGCCTCGCCCCAAAGCTAAAAGGCGATGAAGGGTCTCCTCGCCTTGCCTCTTGCCATTGGCGATGAGGCGATCGCCTTTCACAAAAACCGACTATGACCCTGTCATTTAAAGCTTAATGTAGGTGCATGAATTATATGTAGCTCTTTAGAATATTTATTTCTTTTTCTGGTATACCTTTAGATTATTTTGTTCCAATAAGCATTTCAATGATATTTTGATTGTTTTCAGCAAATGTTTTTCTATGTTCATTGCATCTCTTGATCAATATGGTGGTGCTCTTGTTAAAGTAGCGTGTAACCATTGGTGATGCATGTAAAGGGAATTTTCTAAATACAATCATTTTTTCTTCAAAGTTAACCATTTGTAGCTTTAACTGTTCAATGGCCTTGCACATAAGGTGTATCCTTCTTGGCCCTCTGTTTAGACAAAGTACCATCAATAGGATGAGAGTTACAGAAAAAAGTAGCAGAAGTACTTCTCAGATTGCTGATATTCATCAATTGATATGAGTTTATTGTTTGGTGATGCAATGTAGATAAATGACAGGTATGAGTTCCCTCTGCAACTCGATCTAGATAGAGAGAATGGTAAATACTTGTCGCCTGAGGCAGATGGAAGTGTCAGAAACCTTTACACACTTC</genome_strand>
        <mrna_strand>GGATGGGACACATATGATTCTTTCTTGCAGCATGATGTGCAAGAACTCAATCGTGTTCTCTGTGAAAAGCTTGAAGAAAAAATGAAG...........................................................................GGTACTGTTGTGGAAGGCACTATACAGCAGTTATTCGAAGGGCACCATATGAACTATATTGAGTGCATCAATGTGGACTACAAATCTACGAGAAAGGAGTCATTTTATG...........................................................................................ATCTTCAGCTTGATGTCAAAGGGTGTGCTGATGTTTATGCTTCGTTTGATAAATATGTTGAAGTTGAACGTCTTGAGGGCGATAACAAGTACCATGCCGAACAATATGGTTTGCAG......................................................................................................................................................................................................................GATGCTAAGAAGGGTGTCTTATTCATGGATTTCCCCCCTGTCCTGCAGCTTCAGTTAAAGCGCTTTGAATATGATTTTTCACGGGACACTATGGTAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATGACAGGTATGAGTTCCCTCTGCAACTCGATCTAGATAGAGAGAATGGTAAATACTTGTCGCCTGAGGCAGATGGAAGTGTCAGAAACCTTTACACACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322577" ref_strand="+" ref_description="SGN-U322577        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT3G11910.1 | Symbol: None | ubiquitin-specific protease, putative, strong similarity to ubiquitin-specific protease 12 (UBP12) (Arabidopsis thaliana) GI:11993471; contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF00917: MATH domain | chr3:3761394-3770391 REVERSE | Aliases: F26K24.20 (evalue: 0, score=635) genbank/nr: ubiquitin-specific(evalue: 0, score=658)">
      <seq>ggatttaataatactcccttcaaatttactaagtactcaaatgcttacatgctggtctatattcgggaatgtgacaaagagaaaataatgtgtaatgttgacgagaaggacattgctgagcaccttagggcaaggttaaagagagaacaagaagagaaagagcagaagaagaaggagaaagcagaggcacacctttacacaattataaaggtttctcgtgatgaagacctcagacagcagattgggaaggacatacattttgatttagtggattatgacaaagttaggagttttcgcattcagaagcagacactttttagcatttttaaggaggaagttgccaaagaatttggtgtaccagtgcaatctcaacgtttttggttatgggcaaagcgccagaatcatacatatcgtccaaatcggccattaacacatctcgaagaagctcaaactgttggacagttgagggaagcgtcaagtaaggttcagaatgcagagctaaaattgttcttggaagtggagcttggactggacttgagacacatccctccacctgacaagactaaagatgatattatgctattcttcaagatttatgatcctgagaaagaagagctgaggtatgctggaagactctttgtaaagggaacgagtaatccaactgaaatcttgaacaaactaaatgaaatggctggctatgcccctgatcaagagattgaactatatgaggaaataaaatttgaaccgattgtcttgtgtgaacccattaacaagaaatttgctttccgaacgaaccagcttgaggatggtgatatagtatgctatcagaaatccctttctcctgaaagtcgccagaagttacggtatccagatgttccttctttcctggagtatgttcaaaatcgccaggtggttcacttccgatacttagaaaagttgaaggaggatgatttctgtttagagctgtcaaagattaatacatatgatgaagttgtggaaagagtagctcagcgacttggcttggatgatccatccaaaataaggctcacaccccataattgttactctcagcaacctaaaccccagccgatcaagtacagaggtgttgacacccttggagatatgctggtccactacaatcagacatctgatattttgtactatgaagtactggacattcctttgccagaattgcaaggtttaaaaaccttaaaagtagcttttcatcatgctaccaaagatgaagtggtcacttacactatcagactaccaaaacaatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="37102" stop="42814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37402" g_stop="37530" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37531" i_stop="37623" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37624" g_stop="37704" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="210" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37705" i_stop="37802" i_length="98">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37803" g_stop="37922" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="330" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37923" i_stop="38511" i_length="589">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38512" g_stop="38634" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="453" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38635" i_stop="39152" i_length="518">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39153" g_stop="39230" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="531" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39231" i_stop="39324" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39325" g_stop="39413" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="620" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39414" i_stop="39494" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39495" g_stop="39603" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="729" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39604" i_stop="40533" i_length="930">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="40534" g_stop="40602" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="798" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40603" i_stop="40675" i_length="73">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="40676" g_stop="40786" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="909" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="40787" i_stop="41838" i_length="1052">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="41839" g_stop="41894" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="910" r_stop="965" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="41895" i_stop="42017" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="42018" g_stop="42195" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="966" r_stop="1143" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="42196" i_stop="42271" i_length="76">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.829" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="42272" g_stop="42373" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1144" r_stop="1245" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="42374" i_stop="42475" i_length="102">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="42476" g_stop="42514" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1246" r_stop="1284" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U322577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37402" e_stop="37530"/>
          <exon e_start="37624" e_stop="37704"/>
          <exon e_start="37803" e_stop="37922"/>
          <exon e_start="38512" e_stop="38634"/>
          <exon e_start="39153" e_stop="39230"/>
          <exon e_start="39325" e_stop="39413"/>
          <exon e_start="39495" e_stop="39603"/>
          <exon e_start="40534" e_stop="40602"/>
          <exon e_start="40676" e_stop="40786"/>
          <exon e_start="41839" e_stop="41894"/>
          <exon e_start="42018" e_stop="42195"/>
          <exon e_start="42272" e_stop="42373"/>
          <exon e_start="42476" e_stop="42514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTAATAATACTCCCTTCAAATTTACTAAGTACTCAAATGCTTACATGCTGGTCTATATTCGGGAATGTGACAAAGAGAAAATAATGTGTAATGTTGACGAGAAGGACATTGCTGAGCACCTTAGGGTAAGATGCTGACTGCCGCATGAGTTGTTTTACTTTGTGTTGTTGCATTTGTTTATTGGTTTGCTGCTGACTAGACTAATGAACATGTTACAGGCAAGGTTAAAGAGAGAACAAGAAGAGAAAGAGCAGAAGAAGAAGGAGAAAGCAGAGGCACACCTTTACACAATTATAAAGGTATTTTCCTTAAATATTCCACCTTTTTCAGTGATTACTGGGACGAACGAGTGGTGTTTAAGTTGAGAAGTTTTGCACCTAATACATCACTGTTTCAGGTTTCTCGTGATGAAGACCTCAGACAGCAGATTGGGAAGGACATACATTTTGATTTAGTGGATTATGACAAAGTTAGGAGTTTTCGCATTCAGAAGCAGACACTTTTTAGCATTTTTAAGGTAATATGATATTCTTTTTTTTTTTTTGAGAAAGCCAACTTGTATTATAAACAAAAGAATACATACAGAGTATTCTAGTAATACTTACATCCAAAAGTTGCAAAAGGAAAAGAACTCCTATGGAATTGGAGGTCATAAGAACTCTAAAAGAGCTGTATCTCTATTTATGTTCCTAGGAGTTGTCATGTTGTATCTTGATTTATCAGAAGTATTTAATTAATACGGAACCTTTATAAACACTATAGAGGTGGGCGTAGGTTGGAGAAAAAGTTAACTTTCTTAAACCTATGCTTTGATTAGCTTATCCATTCGTGTCTTTGTTTTGGCTTTTTCGCTTATCGCTGGCCAAGGTCACACTAGTTCTGTGTTTTTGTGTCCATTATTGATGCAAATTAGGTTAGGGATCTATATTTTCGCGATTCACTTCCTTAAACTTTAAACTAGGTGAGATCTCTCTTGACTTGTGAAAATAGAAAAAAATATTTGAAATCTGTCTAGACTCTTGAGGCCTTTAAACTTTTTGCATGTAATCAAGCTTAGATGTAGTGGTTACAATGCCTCTGTTGACTAATTATGTTGCTGCATGCAGGAGGAAGTTGCCAAAGAATTTGGTGTACCAGTGCAATCTCAACGTTTTTGGTTATGGGCAAAGCGCCAGAATCATACATATCGTCCAAATCGGCCATTAACACATCTCGAAGAAGCTCAAACTGTAAATACTTTATTTAAATTTTTTAGACAGATCAAGTAAACTGTCCTTTTACCAGGATGTTTATTGACTTAAACAGGATGTTCTATACATTAGGCTCCTCATCTAGTGTTTGTGGACGCTAAAGAGTTGTAACCTAGTCCAACAAATCTAGGGTGAATACTGAATTTACCTGTATACATCAGCAACAACTATGTGTCAGTCCCAAATAAGTTGGGGTCATCTATATGGCTCCTCATTTCGCCATTTAAACTTAGGTTGAACCCTTATTTCTAACAAAAAAACAAAGAAAAAAGGATCTGCCTCCTTAGCAATCTATCTGCTGTGCCAAGATTTGCTCTCTTCATGGGATACTGATGTTTATTTATAATTTGCAAAGACAATATAACTTCAAAAGGTGTGACTCCGTTTTAAGGTGATTTAAATCAGGACATCACTGATCCCCACAAACCCCTACCCAAAGTCATGCTGACAGATCTCTGTGTTTGCTTAATTACCTGATAAGTGCTCCACAAATTTAGGTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTTCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTGGTAAAATATTCTTCACAATAATTTCCAGTGAAATGCTAATATAAAGTTTTTCTATTTATCAAGCATTATTTAATAGCATGTGCATAATTACAAGGACTTGAGACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAGGTAATATTGATTATCTTCTTTAATGTTCATTTTAATTAAACATTTTTTTTGTTGATTGGTGATTTGTCTCTTGTACTGAAGGTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAATGGCTGGCTATGCCCCTGATCAAGAGATTGAACTATATGAGGTTTGTTCGTAGAATATCTCTGGGTATTATTGATGGTCATTCAGTGACTATCATGACTTTTTTGGAAATTAGAAGTTTTAAAGATGCGATAGATAGACATCCATGCCATTCCAGAACTTGCAGTTGCTCTGACAACTGTTCCCCTTCCAGCCTTGTTATGCTGGTCATCAGCCAATAGTATCTGGATCTTCTCCCTTTAGCACATATGCTTACACTTTTCTGGTGTCTAGGTCCAAGACTAAATAAATGGCAAAATGTCTTGGCATTTCTTCTTCGCAGAGTTGTCGAAGTGGTAGCTTTCAAGAGTTGTAATTTTTACTCTTTTTATGGTTTATAGATCAAATCCTTGGTTTAGATTCGTTTGCAGTTCATGAGAAACAGAAGATTCAATTCCTTTGTAGCTAAACAACAATAGGAATGTAAAATATATATGTGTAGACCGAGAAAACTTAAGACTTTAAACTGAAGTTCAGAAGAAGACCAAATTGGTTAGAAGTTTTGTTACAAAATTTCAGACGGCAGATATTGTTAGGGAATGTAGTGTTAGGACTTCCAATTTAAAGGAAGAGCTTAAAATAAAATGACCACTATGTGGTCAAACTTCTGGTTCCTCTAGAAGCTTATGTTCCTGATTGGTTCCTTTACAAATTTAAATCTTACCTTCTATTTTGCATTGTGTGGGGGATAAACGTATGTCTAGGAGCTTATTTCGTGATGAGATCTTATGCAATCTATCTCGACATGTCATAGAATCCATATGATCTTTAATTCTTTTCTACTGTTTCTGGTTTGCTTTTGGATCAGAATCACTTTCCATAATTTGGAGACCTAATAATGCCTAGAGCATTCTAACTATCTTTAAGGAGACTATGTTTGGTCGTTTCACTTGTTCATTTGTTCTAAACCTCACATTTGCTTAATTTTGTTCAGGAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAGGTATACCTAATTACCATAAAGTGTGTAGTGGCAGGATTTTTCATTGATTTGTCTGATACTCATTTTTGTGCAGCTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAGGTAATCTATGTATAGATTTATCAGCTATTTTCTCTTCCATTTTGTCCTGTTAGTTACGTTTTCAACATTGCTGGTAATGGAGAATGGGTATTGTTTTTTTGCCTTATAGATAATGGGATACTGATTAGTGACCTTAGTCGCCCAGATTACTTGTGTCAAACTTAATAGATGAGAGAGAGATGTTTTGGGAAAACTTAATTGCTAAAGAAGTTTTTGATAGGCATATCTGCTGAATTTTAATATATCTTCTAAGATTACATTGTTTGGGCTGGTTTCTTTTGTTTAGAAGCTCTGTAGTAACTCAGAGTCTCAAATTTCCATGAAATATTTTAATCAGTGTTGCAACGAAAAATGATTGCTTAGATTCGGTCACTGACCCTGCTAACACAGGATGATTTGTGCACTGTGCTTCCCTTTAAGAAAAAAAGTTGTTTACTGAAATTTGATGATAAAGAAAAACGGGGTGGCTTGTATAAAATTTTCTCACTAGAAGCTAAACATGGACGCCACCATGGCAGGTTTGATTTTTTGGAATATAATACAAGACTGTTGCCTTCTCAAAAAAATAAATAAAGTGTAAACCTTACTTGAGTAGAGAAAATAGGCAGTTCCCGACTAAGTTGCTCTTACTCTTCAATTTTGGTGCCGCACCCGTGTCGAAGTGGGGAGGGGGTCTTCGAGGCACAGCGCCCCGGGTTTGTGGTGGGGGGGAGGGGGACCTTGGGGCACCCACTTTGTTCCTTGCGTTTACTATAAATAAACAATTTTTGGATGTACTATTTACCAACATTCCCTTTTGCTGGTTTACATCTATAATACACCTTCATTACTTATTTAAAAAAAGTTTTTACTTGTGGTTCCCTGGTAAAAAAATCAAGTTCTGTTTATAATGACATGAGATGGGTTAAGCATAAATAGACCTTACTTCCAAAAGAAACTTTGTGATGTCCTTATCCTGTTCCATATTCAATGAAATATGACACTGAAATTTGTCTTTGGCTTAACTATTTATTTGTTAAATATTTTATGATCTACTATAATATGTCTTACAGGTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCTGTATGTTCTAAAACTTTGCTACTCTTTTTTTTCTTTTTATTATATATTATAAAGGTAGAGTAGATGATTCACCTCTAGGTTTTATCTTTATTACTTTCTCAAGCATTTTATTGTTATGAAAAGGTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCATCCAAAATAAGGCTCACACCCCATAATTGTTACTCTCAGCAACCTAAACCCCAGCCGATCAAGTACAGAGGTGTTGACACCCTTGGAGATATGCTGGTCCACTACAATCAGGTGAATTTTAACATTGACTAATAATAATGAACATTAGTTTCTGAAAGTCTTAACTATTTTAACTACTCGTTGACAGACATCTGATATTTTGTACTATGAAGTACTGGACATTCCTTTGCCAGAATTGCAAGGTTTAAAAACCTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAAGTAAGCATGCTGCTCTGATTTCCATTGATTTACGAGCACAATTTTTTACTTCTGAATTCTTGCTTTGATAATTACTTAAATTTCTCCTCCTTCGCTATGTAGGTGGTCACTTACACTATCAGACTACCAAAACAATCTACT</genome_strand>
        <mrna_strand>GGATTTAATAATACTCCCTTCAAATTTACTAAGTACTCAAATGCTTACATGCTGGTCTATATTCGGGAATGTGACAAAGAGAAAATAATGTGTAATGTTGACGAGAAGGACATTGCTGAGCACCTTAGG.............................................................................................GCAAGGTTAAAGAGAGAACAAGAAGAGAAAGAGCAGAAGAAGAAGGAGAAAGCAGAGGCACACCTTTACACAATTATAAAG..................................................................................................GTTTCTCGTGATGAAGACCTCAGACAGCAGATTGGGAAGGACATACATTTTGATTTAGTGGATTATGACAAAGTTAGGAGTTTTCGCATTCAGAAGCAGACACTTTTTAGCATTTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTTGCCAAAGAATTTGGTGTACCAGTGCAATCTCAACGTTTTTGGTTATGGGCAAAGCGCCAGAATCATACATATCGTCCAAATCGGCCATTAACACATCTCGAAGAAGCTCAAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTTCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTG..............................................................................................GACTTGAGACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAG.................................................................................GTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAATGGCTGGCTATGCCCCTGATCAAGAGATTGAACTATATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAG.........................................................................CTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCT...........................................................................................................................GTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCATCCAAAATAAGGCTCACACCCCATAATTGTTACTCTCAGCAACCTAAACCCCAGCCGATCAAGTACAGAGGTGTTGACACCCTTGGAGATATGCTGGTCCACTACAATCAG............................................................................ACATCTGATATTTTGTACTATGAAGTACTGGACATTCCTTTGCCAGAATTGCAAGGTTTAAAAACCTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAA......................................................................................................GTGGTCACTTACACTATCAGACTACCAAAACAATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319390" ref_strand="+" ref_description="SGN-U319390        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: AT5G06600.2 | Symbol: None | ubiquitin-specific protease 12 (UBP12), almost identical to ubiquitin-specific protease 12 GI:11993471 (Arabidopsis thaliana), one amino acid difference | chr5:2019108-2027946 REVERSE | Aliases: None (evalue: 1e-100, score=363) genbank/nr: gi|11993471|gb|AAG42754.1| ubiquitin-specific protease 12 [Arabidopsis thaliana](evalue: 8e-99, score=363)">
      <seq>cttaaaagtagcttttcatcatgctaccaaagatgaagtggtcacttacactatcagactaccaaaacaatctactgttggtgatgtaattaatgatttaaagacgaaggtagagttgtcaaatccagatgcagaattaagattgctagaggtcttctaccacaaaatttataagatatttccaacaagtgagaagatagagaacataaatgaccagtactggacattgagggccgaagagattcctgaagaagagaagaatctaggcccgaatgctcgtttgattcatgtgtatcacttcagtaaagaaactgcacaaaaccaaatgcaaattcagaattttggggaacctttcctcttggttatccatgagggtgagactttagttcaagtgaaggtgcgaatacagaagaaattgcaggtcccagatgaagagtttgctaagtggaaatttgcattcctctcacttggtcgtcctgagtaccttgaggactcggatatattgttcaaccgtttccagcgaaaggatgtttatggtgcttgggagcagtatcttggcttggaacattctgacaatgcccctaaaaggattaatgcagcatatcagaatcgcccgacgtacgagaagcctgttaaaatttacaactagtaacgccgctgaaaatgaagattgtgagatggttcaaatctatgattgaccattgcatttgtccctgaagttaagaagccagttcgagtctgtacagggttttatgatttttgttactgaagcatcttgtattctgatatggatgtgaagtttgatcctaatgcagcatccatatctcagtacttgaactcaagtgatgcgtaaatggcccatcgataactctctctctgttctagtgtaagttaagcgagccatacattggcaaagaattttgaacaaatgaatgaatacataatatattgtgcttgattcagttctgacttttatctgaggagaagagtactactcagttttctgccattttttgggctctatagatgtgattatttctggtagagattttgaggtttttccctctgaaattgtgtaaccttaagtttggtaatttcttgctattgtaattaaccagtaattaagaatgacaaattgtttgtcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="42037" stop="88876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42337" g_stop="42373" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42374" i_stop="42475" i_length="102">
            <donor d_prob="0.953" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42476" g_stop="42547" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="109" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42548" i_stop="42679" i_length="132">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42680" g_stop="42745" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="175" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42746" i_stop="42976" i_length="231">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42977" g_stop="43042" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="241" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43043" i_stop="44412" i_length="1370">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44413" g_stop="44499" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="328" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44500" i_stop="44602" i_length="103">
            <donor d_prob="0.496" d_score="1.00"/>
            <acceptor a_prob="0.483" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44603" g_stop="44719" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="445" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44938" g_stop="45012" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="520" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45101" g_stop="45187" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="607" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="45819" g_stop="46352" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="1141" r_length="534" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="46353" i_stop="47107" i_length="755">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="47108" g_stop="47129" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1142" r_stop="1163" r_length="22" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U319390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42337" e_stop="42373"/>
          <exon e_start="42476" e_stop="42547"/>
          <exon e_start="42680" e_stop="42745"/>
          <exon e_start="42977" e_stop="43042"/>
          <exon e_start="44413" e_stop="44499"/>
          <exon e_start="44603" e_stop="44719"/>
          <exon e_start="44938" e_stop="45012"/>
          <exon e_start="45101" e_stop="45187"/>
          <exon e_start="45819" e_stop="46352"/>
          <exon e_start="47108" e_stop="47129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAAGTAAGCATGCTGCTCTGATTTCCATTGATTTACGAGCACAATTTTTTACTTCTGAATTCTTGCTTTGATAATTACTTAAATTTCTCCTCCTTCGCTATGTAGGTGGTCACTTACACTATCAGACTACCAAAACAATCTACTGTTGGTGATGTAATTAATGATTTAAAGACGAAGGTAAAATGGTAAACTCGGTCTGATATTCCCTACTTTCAACGTGTCTGTGAACTGAAAACTTACTATTCTCCTTTATTGATGCTTCTATATTGTTAGCTTTACTTGATGCTACTCTGCTATGCTGCATAATAGGTAGAGTTGTCAAATCCAGATGCAGAATTAAGATTGCTAGAGGTCTTCTACCACAAAATTTATAAGGTATTGGTTTCAATCCCTCAACATTTGCTTCATTTTATACTTCTTAGCTAGGTCTTCTCTTTTTGTCGCCATAAATATTTGCCTCCGGAGAAGTCCTAGTCGTTATGACATAAGCTCAGAAACTCTTTAAGTCTACAAATAATAGAAATAGTTAACCAATATATTTGTTTGTAGACATTGTCTCTATCTCCATTATATTTACCTCTTGTTTTAATGATTGCTTTCATGCAGATATTTCCAACAAGTGAGAAGATAGAGAACATAAATGACCAGTACTGGACATTGAGGGCCGAAGAGGTTCTCTCTTACACACGCTTTTCTAATTCTACACTTCTGTCCCTACTATATCTGCATGTGGCCTTTATACAGTGGCCATTGTGGTGGGTAAGGTAGTGAGTTTTCCTATAGTCAAAAGCTTGAACACAAATTGGTAGTTTTCCTGTGGTCAAGAACTTGAACAAATATTTGTAGTGTTCCTGTGGTCAAAAGCTTTTATCCTTCTCTTCCTCACCCCCTTCTCTCAAACTAATTACCACATATAGATGCAGCTGACTTTGACTTACAAGTTGGTCATAAAAATGACTGAAATCATGTAGGGCCTTTACAAGCTACTGCTGTCATTGATAGTCTTATGATATAGATCTATGAATCTAAAGAATAGTGGTGTGTAAAACCAGACCAGTGTAGTCAAAGGCACGTTTAAGCCCTGAAGCGAGGCTCAAAACGTATTGAGCTCTTTGCCTCGTTTTATGTGCGCTTCGGTGTTGTCATCGAGGTTCTAAAACAAACGTTTTCTTCCCGATGATCCTCTGCTAAATAAGTGAAACTAAACAATTGATATTTCACTTTATCATAATTGTTTTTCATTTCTTTGGTCATAAACATATAAATTTGTATTTTTTTTCTTCCTTTGAGCCCTTTTTCATTAAAGCCCGGGCTTTGTGCTTAAAGTCCCCACGGACCTTAGAGCTTTTTTGTGCTTTTCGCCTTCGATAACACTAAAGCAGACGAGAATAAGGTTTTAGTTTTTTTGATATCATCTGAATTTGTGCTGTAAAGAAAGAAAATGGACCTTGAGTTAATCCCCCAAAATAGACATTTGGTGACCGAGGCAAATGTAAGGCTAAATTTGGGGCACATGATCCTGTTTTCTCACTGTAAAACTAGGTATTTTATGTATATATTTCATAAAATTGGTATAATGTTCTCTTTTACTACTATTGCTACAAGAAAACTAAATTGTGCACTTGGTTGAATGTTGTTACCTAGAGCTAGAGGTCTAGGTATCAATTCCCTCTTAATACATTTTCTTCTTCCTTTTTTAAGTGGTAAACCCGTGTTCTACGAATCCTAGATTTGTCACTGATTATTGAGGATTATCCAAAGACTATTTAAGGAGACAACATTCCATTCCTTCAATCAAAGTGCGACACTTAACATCCCAACACTTCTAGGGTACATGTGGAGTGTGGACAATATGGCATAGAAGTCCAATAATAGCGAATGCTAAATGTCAGGTGTTGAATATTATTGGCATGTTACTCCTTAATAACTTCCTTGACGATAAATATGAAGCGGCAACTCAATTACCTGTCTAGGGCCAAAAACACTATTTGACACTGTTAAATTTCAGTTTATTAATCTGAATCTTCTCTTCGTCCCTGCAGATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATGGTAAGATTCTCTTCCCCCGTATCCTGACCCACAGGGAAAAGGTGAACGAGAGAAAGGAATTTTGTCTCATGCAGCTTTGTTTACTTCTTGACATTTGAAACAGCAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAGGTACTTTGCAACTTGACATTGCTTCATCTTCCTATGAATGGCTATTATACTCGAACCAATTTACTATAATCGCTTCCTATTTTTACTCGTTTATTGGTTAGTACTTGGTTTCCTTTATCTTATTTTGTTTGTTTGGGGGAGGGGAATCGGGAATGGTTTGGATTAGTATGTATGTAGTTGATGCTTGGTTTCTTATTTTCATTTTATACAACTTTCAGTGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAGGTACTAAACACCAACTCCCTCCACCGCTAAAATTCTCACTAAATGAATCTGTAATTTTGCATCTTTGGATCTTTTTGTTAACATGCAGCGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAGGTAATCTGAATGTTCGGTTCTTACTCGTGGGCATACTCTGTAATTGGTAAAGAAGAAAAAAATTAACTGCTTTAATACATAAAGTTAGTTCCAGAGAGAGATTTGACTCGTGGAGTGGACTCTTGAGGTTTCTCTATCATGACTTTGGTGGGTTACGAGACCAGGAGTTCTCCTTCTGTGCAGCCTATGTTCCATAGTTATCATTACTCATCTAGCACTTCAGAGAATTTCCATCTGTTGAGGATGAAGACAAACTTCTAATGACTTTTTAAGATTTATTTGATTTTCTGTTGAATACCTCTGCTTCTATCGGCGCTTCGCCTGGGAGCATAACCTAGTTACATTAGTAGAATCTCTGGAAGGAATTGGAGAGATCAGATTTCTAGTATAGAATGCAAAGCTGGCTTAACAACCGTATAAAATGTTGATTTTCCGATTGAATGCATGTACAAATTGCAATGATTTACTTCAATGTGCTCCTGCTCTACCGTTTCTTTGTTTCTCCATGAGATGAACTTTGGTTACTGTGAATGTCTCTAGCTGTACCTGTCCTTACTCTACTGTATTCAAATAAATGGGAGTGGACCTCCTCATTTCGTAATAATACCTACTCTTTTCTTCCATGTTGCAGAATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTTTGTCACAAGTATCTGTTGAGTTTTTTGTTTTTGTTTGTATCTAGAGCTGTATTTGAAAGGAAACGATGGATAGATACAAGTTTTTCTCCAGTTCTAAAGTTCTCATATGGTGTATGGAACGCGACTAATTTGGATTCGTGTTGAGATGTTCAGTAAAATGCTTTTTGTCTATTAAATTGCAAAATCTCTACTTGTGAATTTTCATTAAATGTTTTCTAATTTTAATGTTCTCTCGATTAAACATAATAAACAGAGTTTTGTGAATATCTGTATATATATAAAAAAGAAATACTAAAAATTATAAGTCCTTTATGTACATTTAAATTTTGATTTTTCTTGGAAAATACAGATTAATCCAATTTCGAAACGAATATCAAACGCCTAAAAAAAAGAAAGGAAAAAAAAAAGAGAGTGAACATAAAGGAAGCTCTGAGCTCCACATATTAACTTCCAATGGCAACAATACTCTCTCGCTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCTCCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAGGTAAAAAAAAAGAACAAAAAAA</genome_strand>
        <mrna_strand>CTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAA......................................................................................................GTGGTCACTTACACTATCAGACTACCAAAACAATCTACTGTTGGTGATGTAATTAATGATTTAAAGACGAAG....................................................................................................................................GTAGAGTTGTCAAATCCAGATGCAGAATTAAGATTGCTAGAGGTCTTCTACCACAAAATTTATAAG.......................................................................................................................................................................................................................................ATATTTCCAACAAGTGAGAAGATAGAGAACATAAATGACCAGTACTGGACATTGAGGGCCGAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATG.......................................................................................................CAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAG..........................................................................................................................................................................................................................TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG........................................................................................CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336802" ref_strand="+" ref_description="SGN-U336802        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G11910.1 | Symbol: None | ubiquitin-specific protease, putative, strong similarity to ubiquitin-specific protease 12 (UBP12) (Arabidopsis thaliana) GI:11993471; contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF00917: MATH domain | chr3:3761394-3770391 REVERSE | Aliases: F26K24.20 (evalue: 9e-06, score=47.8)">
      <seq>ttttttttttgtgacaactatttgtcattcttaattactggttaattacaatagcacgaaattaccaaacttaaggttacacaatttcagagggaaaaacctcaaaatctctaccagaaataatcacatctatagagcccaaaaaatggcagaaaactgagtagtactcttctcctcagataaaagtcagaactgaatcaagcacaatatattatgtattcattcatttgttcaaaattctttgccaatgtatggctcgcttaacttacactagaacagagagagagttatcgatgggccatttacgcatcacttgagttcaagtactgagatatggatgctgcattaggatcaaacttcacatccatatcagaatacaagatgcttcagtaacaaaaatcataaaaccctgtacagactcgaactggcttcttaacttcagggacaaatgcaatggtcaatcagggggggggagcatctcacaatcttcattttcagcggcgttactagttgtaaattttaacagggcttctcgtacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="46659" stop="45528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46367" g_stop="45828" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U336802" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46367" e_stop="45828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATACTTGTGACAAACAATTTGTCATTCTTAATTACTGGTTAATTACAATAGCAAGAAATTACCAAACTTAAGGTTACACAATTTCAGAGGGAAAAACCTCAAAATCTCTACCAGAAATAATCACATCTATAGAGCCCAAAAAATGGCAGAAAACTGAGTAGTACTCTTCTCCTCAGATAAAAGTCAGAACTGAATCAAGCACAATATATTATGTATTCATTCATTTGTTCAAAATTCTTTGCCAATGTATGGCTCGCTTAACTTACACTAGAACAGAGAGAGAGTTATCGATGGGCCATTTACGCATCACTTGAGTTCAAGTACTGAGATATGGATGCTGCATTAGGATCAAACTTCACATCCATATCAGAATACAAGATGCTTCAGTAACAAAAATCATAAAACCCTGTACAGACTCGAACTGGCTTCTTAACTTCAGGGACAAATGCAATGGTCAATCATAGATTTGAACCATCTCACAATCTTCATTTTCAGCGGCGTTACTAGTTGTAAATTTTAACA-GGCTTCTCGTACGT</genome_strand>
        <mrna_strand>TTTTTTTTTTGTGAC-AACTATTTGTCATTCTTAATTACTGGTTAATTACAATAGCACGAAATTACCAAACTTAAGGTTACACAATTTCAGAGGGAAAAACCTCAAAATCTCTACCAGAAATAATCACATCTATAGAGCCCAAAAAATGGCAGAAAACTGAGTAGTACTCTTCTCCTCAGATAAAAGTCAGAACTGAATCAAGCACAATATATTATGTATTCATTCATTTGTTCAAAATTCTTTGCCAATGTATGGCTCGCTTAACTTACACTAGAACAGAGAGAGAGTTATCGATGGGCCATTTACGCATCACTTGAGTTCAAGTACTGAGATATGGATGCTGCATTAGGATCAAACTTCACATCCATATCAGAATACAAGATGCTTCAGTAACAAAAATCATAAAACCCTGTACAGACTCGAACTGGCTTCTTAACTTCAGGGACAAATGCAATGGTCAATCAGGGGGGGGGAGCATCTCACAATCTTCATTTTCAGCGGCGTTACTAGTTGTAAATTTTAACAGGGCTTCTCGTACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337915" ref_strand="+" ref_description="SGN-U337915        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | thylakoid lumenal P17.1 protein, contains Pfam PF00684 : DnaJ central domain (4 repeats); SP:Q9LXV9; PMID:11719511; supported by EST AI997589. | chr3:15812359-15813678 FORWARD | Aliases: T15B3.160(evalue: 4e-36, score=149) genbank/nr: gi|15229846|ref|NP_189988.1| thylakoid lumenal P17.1 protein [Arabidopsis thaliana] gi|11288806|pir||T48956 hypothetical protein T15B3.160 - Arabidopsis thaliana gi|7594563|emb|CAB88130.1| putative protein [Arabidopsis thaliana] gi|26452306|dbj|BAC43239.1| unknown protein [Arabidopsis thaliana](evalue: 3e-34, score=149)">
      <seq>gaatggcaacaatactctctcactcatcactctatcccttccattctctctcttcttcaacaacaatttgttcatccttatgcccttttacttgctgtccttcttttccaacaaagcttgaattcccagtcttgtcaacatcatgtttttcccaatttcaccaatttttccctttccccacaaatcatcatcatcccattttgctctttgttggttttgattcaccccctttggatactcaaacttttcttgccactatcagtgttttaactgccattgctctctccctctttcttggcctcaagggagatccagttccttgtgataggtgtgctgggaatggtgggacaaagtgcgtgttttgcaacgatggtaagatgaagaaagaaacaggattagtagactgcaaagtttgcaagggtgcaggattaatactctgcaagaaatgtgctggttctggatactcaaaaaggctataacatatactacttgtactcttttttcctctagctattgacttgtgttctgaggctaaatcacacatacaagctcacatatgaggctatctcattttggttaaattatatatttttcttgaaaaaagaagggttactagtacttttaatccctcgattattggtagattatatctgtctaagcacatttaacctttagtcaattgaatgttatagctcattacaatatgatgtattttgtcaaatagcatttgtcttcacacaaactttattagtaattgttttgccaattgacttnnnnnaaaaaaaaaaaaaaaaannaaaanaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="46504" stop="49849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46803" g_stop="47107" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47108" i_stop="47319" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47320" g_stop="47356" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="342" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47357" i_stop="48753" i_length="1397">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48754" g_stop="48837" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="426" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48838" i_stop="49202" i_length="365">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49203" g_stop="49549" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="773" r_length="347" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="779" polyA_stop="796"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U337915" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46803" e_stop="47107"/>
          <exon e_start="47320" e_stop="47356"/>
          <exon e_start="48754" e_stop="48837"/>
          <exon e_start="49203" e_stop="49549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCAACAATACTCTCTCGCTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCTCCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAGGTAAAAAAAAAGAACAAAAAAAATCTTATCTTGATTTTTATCATAAGGTTTCATAAAGTTCCTTTTTTTAATTGCTTTTCTCAAAGATACTTGCTTTCAGTTTATGGGTCAATTTCTTTATCTTGGGTGTCATAAAGTTCCTTTTTTTTATTGATTTATCAAGCTGTTTAAAGTTTTGTTAAATTTTAGTTTATTTGTTATTATATTTGCAGGGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATGGTGAGCCCTTTTATATATTTTGGTTTTAATTACTGTTATGTATGTATGTTTATGTGTGTGGTCTATGTGTGTGTGTGTGTGTATATATATATATATATATGTTCTTCATATAGATTGATGTAATTGAGCTAAGGAAAAACTATCTGTGCAAGTCAAGTCCAACTGTTGAATTAAGAATCTGTTATGGATTCCAAGTTGTAAGATATCTCAGTCCATAAGCAATACTAGTTAAAAAACTATTTCAGTGCTTGAAAGGTTTCATAAAATCGTGTAAGAGTTGTTATCGTGATCAAAACTAGACAAATGACAACTTATTGATATGGTAAAGCTTTACAGGATTGTTTATAAGCTATAACGTAGCCATTTGACGCTGTATCAATAACTAGTAAGATGTTTTGGATCCTGCTTTATTCGTTTATGCAGGCAACTATTTTTTCGGATTTTTGATATATAACTCTAAACAAGCGGATTGATAAATATGTTATCTTCATGATGGAGTGAGTGGAAGGGCATGTTTCGATTAGCTAGGCATGCCTGGCAAAGGCATGTTCAGGATGTGGTGTGAACTTTTAAATTTATGACGTATTTTGGATATCGATTTTGTTTTAGGATTTTATTATGTGTGCTTCATCATGAGAAATGCAACAATCCTGCAGTCAATATACAATAGATCAAAACTATAAATAATAAAAGCAAAGTCTAATACTTCCTGCAGTCTTCATTTCTTCCCTAGGCTAACAGCTTCTAGAAGGTATTAACGGAGGATTGTTTGGAGAAAGGTGCTAATGATTCTGTTAGTAATCGTTGAGAGCATACTGATGTTATATATGTTAGTTTCCGATTAGCTGCAAACCCAATGGTTTGAGATTAACCACTTCACCGGTGCACTAAGTGGATTGCTGACCCTCGCTTATGGGCTCCGGATCTCCATTTGCCCTTTGGACCATTCTGTATGGATTGAAGCAGTCCTCGAGGGCGTGGTTTGAAAGTTGAGTAAGGTCTTACTTTAGTTTGGCTACAAAAGGTGTGATTCTGGTCACACGCATTTTGTACTAAAGGGTGAGAAAGTGAGCCAGATCATAGTAAAGACCTTTGCTTCTTGTTGTTGTTTTCTTTCTTTTTTTACTTAATGCATCCCCAAAAAACCACCCCTCTTTTTTCTTGAAGAAAGGGGGCAGCGAGAGGAAAGTTTCGATATCTTTCTCATGCAGTCAATTCTGTTTTAGTTTTTAACATCACAGATGAAACTATCGAAAAGGTTTAACACAAGCAAATAAGTGTACAGCGATGTGCATATGCTCGTCTTACAGATTTCATTATGCTGTCGTTGTTCTTCCCTTTTCGTTCCTTAAGGGCAAGAAGATTCAAGTTACTAATAACTTTGTTTGGATGTGTAGGTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAGGTACTATTCAGCTGCAATTTCTTCGCGCTACCAATTTTTAGTAATCGTTCAGTTTGGAATACTTATAGCATGTCTAACAGATTTAGATGAACTCTCGAATTTGGATTTTAGATCATATGAATGACATGAAAGAACTTAGATAATCCTTTCCCATCTGTCAGGCTTGTATATACCCACGCTCCTGTTTATTATTTTCTAGAACCTCAGGAACTATGTTTCCGACTCACCCTTGGCTTTCTCCTTAGGTTTGTCAAGCCAACCTGACATGTTCAGATTGGAACACCTCGACGATGATGTAGTCAAACTAACATTTTTTCTCGAGTAGAATGCATCGAACGATCATTATAATAATTTTTTTATTGCAGGATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTCTTCACACAAACTTTACAAGTAATTGTTTTGCCAATTGACTT</genome_strand>
        <mrna_strand>GAATGGCAACAATACTCTCTCACTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCACCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAG....................................................................................................................................................................................................................GGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................GATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTCTTCACACAAACTTTATTAGTAATTGTTTTGCCAATTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337914" ref_strand="+" ref_description="SGN-U337914        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | thylakoid lumenal P17.1 protein, contains Pfam PF00684 : DnaJ central domain (4 repeats); SP:Q9LXV9; PMID:11719511; supported by EST AI997589. | chr3:15812359-15813678 FORWARD | Aliases: T15B3.160(evalue: 5e-28, score=122) genbank/nr: gi|15229846|ref|NP_189988.1| thylakoid lumenal P17.1 protein [Arabidopsis thaliana] gi|11288806|pir||T48956 hypothetical protein T15B3.160 - Arabidopsis thaliana gi|7594563|emb|CAB88130.1| putative protein [Arabidopsis thaliana] gi|26452306|dbj|BAC43239.1| unknown protein [Arabidopsis thaliana](evalue: 4e-26, score=122)">
      <seq>cctttcactcatcactctatcccttccattctctctcttcttcaacaacaatttgttcatccttatgcccttttacttgctgtccttcttttccaacaaagcttgaattcccagtcttgtcaacatcatgtttttcccaatttcaccaatttttccctttccccacaaatcatcatcatcccattttgctctttgttggttttgattcaccccctttggatactcaaacttttcttgccactatcagtgttttaactgccattgctctctccctctttcttggcctcaagggagatccagttccttgtgataggtgtgctgggaatggtgggacaaagtgcgtgttttgcaacgatggtaagatgaagaaagaaacaggattagtagactgcaaagtttgcaagggtgcaggtactattcagctgcaatttcttcgcgctaccaatttttagtaatcgttcagtttggaatacttatagcatgtctaacagatttagatgaactctcgaatttggttttagatcatatgaatgacatgaaagaacttagataatcctttcccatctgtcaggcttgtatatacccacgctcctgtttattattttctagaacctcaggaactatgttaccgactcacccttggctttctccttaggtttgtcaagccaacctgacatgttcagattggaacacctcgacgatgatgtagtcaaactaacattttttctcgagtagaatgcatcgaacgatcattataataatttttttattgcaggattaatactctgcaagaaatgtgctggttctggatactcaaaaaggctataacatatactacttgtactcttttttcctctagctattgacttgtgttctggagctaaatcacacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="46519" stop="49621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46818" g_stop="47107" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47108" i_stop="47319" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47320" g_stop="47356" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="327" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47357" i_stop="48753" i_length="1397">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48754" g_stop="49321" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="894" r_length="567" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U337914" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46818" e_stop="47107"/>
          <exon e_start="47320" e_stop="47356"/>
          <exon e_start="48754" e_stop="49321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCGCTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCTCCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAGGTAAAAAAAAAGAACAAAAAAAATCTTATCTTGATTTTTATCATAAGGTTTCATAAAGTTCCTTTTTTTAATTGCTTTTCTCAAAGATACTTGCTTTCAGTTTATGGGTCAATTTCTTTATCTTGGGTGTCATAAAGTTCCTTTTTTTTATTGATTTATCAAGCTGTTTAAAGTTTTGTTAAATTTTAGTTTATTTGTTATTATATTTGCAGGGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATGGTGAGCCCTTTTATATATTTTGGTTTTAATTACTGTTATGTATGTATGTTTATGTGTGTGGTCTATGTGTGTGTGTGTGTGTATATATATATATATATATGTTCTTCATATAGATTGATGTAATTGAGCTAAGGAAAAACTATCTGTGCAAGTCAAGTCCAACTGTTGAATTAAGAATCTGTTATGGATTCCAAGTTGTAAGATATCTCAGTCCATAAGCAATACTAGTTAAAAAACTATTTCAGTGCTTGAAAGGTTTCATAAAATCGTGTAAGAGTTGTTATCGTGATCAAAACTAGACAAATGACAACTTATTGATATGGTAAAGCTTTACAGGATTGTTTATAAGCTATAACGTAGCCATTTGACGCTGTATCAATAACTAGTAAGATGTTTTGGATCCTGCTTTATTCGTTTATGCAGGCAACTATTTTTTCGGATTTTTGATATATAACTCTAAACAAGCGGATTGATAAATATGTTATCTTCATGATGGAGTGAGTGGAAGGGCATGTTTCGATTAGCTAGGCATGCCTGGCAAAGGCATGTTCAGGATGTGGTGTGAACTTTTAAATTTATGACGTATTTTGGATATCGATTTTGTTTTAGGATTTTATTATGTGTGCTTCATCATGAGAAATGCAACAATCCTGCAGTCAATATACAATAGATCAAAACTATAAATAATAAAAGCAAAGTCTAATACTTCCTGCAGTCTTCATTTCTTCCCTAGGCTAACAGCTTCTAGAAGGTATTAACGGAGGATTGTTTGGAGAAAGGTGCTAATGATTCTGTTAGTAATCGTTGAGAGCATACTGATGTTATATATGTTAGTTTCCGATTAGCTGCAAACCCAATGGTTTGAGATTAACCACTTCACCGGTGCACTAAGTGGATTGCTGACCCTCGCTTATGGGCTCCGGATCTCCATTTGCCCTTTGGACCATTCTGTATGGATTGAAGCAGTCCTCGAGGGCGTGGTTTGAAAGTTGAGTAAGGTCTTACTTTAGTTTGGCTACAAAAGGTGTGATTCTGGTCACACGCATTTTGTACTAAAGGGTGAGAAAGTGAGCCAGATCATAGTAAAGACCTTTGCTTCTTGTTGTTGTTTTCTTTCTTTTTTTACTTAATGCATCCCCAAAAAACCACCCCTCTTTTTTCTTGAAGAAAGGGGGCAGCGAGAGGAAAGTTTCGATATCTTTCTCATGCAGTCAATTCTGTTTTAGTTTTTAACATCACAGATGAAACTATCGAAAAGGTTTAACACAAGCAAATAAGTGTACAGCGATGTGCATATGCTCGTCTTACAGATTTCATTATGCTGTCGTTGTTCTTCCCTTTTCGTTCCTTAAGGGCAAGAAGATTCAAGTTACTAATAACTTTGTTTGGATGTGTAGGTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAGGTACTATTCAGCTGCAATTTCTTCGCGCTACCAATTTTTAGTAATCGTTCAGTTTGGAATACTTATAGCATGTCTAACAGATTTAGATGAACTCTCGAATTTGGATTTTAGATCATATGAATGACATGAAAGAACTTAGATAATCCTTTCCCATCTGTCAGGCTTGTATATACCCACGCTCCTGTTTATTATTTTCTAGAACCTCAGGAACTATGTTTCCGACTCACCCTTGGCTTTCTCCTTAGGTTTGTCAAGCCAACCTGACATGTTCAGATTGGAACACCTCGACGATGATGTAGTCAAACTAACATTTTTTCTCGAGTAGAATGCATCGAACGATCATTATAATAATTTTTTTATTGCAGGATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATA</genome_strand>
        <mrna_strand>CCTTTCACTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCACCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAG....................................................................................................................................................................................................................GGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAGGTACTATTCAGCTGCAATTTCTTCGCGCTACCAATTTTTAGTAATCGTTCAGTTTGGAATACTTATAGCATGTCTAACAGATTTAGATGAACTCTCGAATTTGG-TTTTAGATCATATGAATGACATGAAAGAACTTAGATAATCCTTTCCCATCTGTCAGGCTTGTATATACCCACGCTCCTGTTTATTATTTTCTAGAACCTCAGGAACTATGTTACCGACTCACCCTTGGCTTTCTCCTTAGGTTTGTCAAGCCAACCTGACATGTTCAGATTGGAACACCTCGACGATGATGTAGTCAAACTAACATTTTTTCTCGAGTAGAATGCATCGAACGATCATTATAATAATTTTTTTATTGCAGGATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGGAGCTAAATCACACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323935" ref_strand="+" ref_description="SGN-U323935        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | thylakoid lumenal P17.1 protein, contains Pfam PF00684 : DnaJ central domain (4 repeats); SP:Q9LXV9; PMID:11719511; supported by EST AI997589. | chr3:15812359-15813678 FORWARD | Aliases: T15B3.160(evalue: 1e-36, score=149) genbank/nr: gi|15229846|ref|NP_189988.1| thylakoid lumenal P17.1 protein [Arabidopsis thaliana] gi|11288806|pir||T48956 hypothetical protein T15B3.160 - Arabidopsis thaliana gi|7594563|emb|CAB88130.1| putative protein [Arabidopsis thaliana] gi|26452306|dbj|BAC43239.1| unknown protein [Arabidopsis thaliana](evalue: 1e-34, score=149)">
      <seq>agtaaaagggcatgtttttcccaatttcaccaatttttccctttccccacaaatcatcatcatcccattttgctctttgttggttttgattctccccctttggatactcaaacttttcttgccactatcagtgttttaactgccattgctctctccctctttcttggcctcaagggagatccagttccttgtgataggtgtgctgggaatggtgggacaaagtgcgtgttttgcaacgatggtaagatgaagaaagaaacaggattagtagactgcaaagtttgcaagggtgcaggattaatactctgcaagaaatgtgctggttctggatactcaaaaaggctataacatatactacttgtactcttttttcctctagctattgacttgtgttctgaggctaaatcacacatacaagctcacatatgaggctatctcattttggttaaattatatatttttcttgaaaaaagaagggttactagtacttttaatccctcgattattggtagattatatctgtctaagcacatttaacctttagtcaattgaatgttatagctcattacaatatgatgtattttgtcaaatagcatttgtcttcacacaaactttacaagtaattgttttgccaattgacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="46644" stop="91439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46935" g_stop="47107" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47108" i_stop="47319" i_length="212">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47320" g_stop="47356" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="211" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47357" i_stop="48753" i_length="1397">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48754" g_stop="48837" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="295" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48838" i_stop="49202" i_length="365">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49203" g_stop="49550" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="643" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49551" i_stop="49655" i_length="105">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49656" g_stop="49687" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="675" r_length="32" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U323935" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46935" e_stop="47107"/>
          <exon e_start="47320" e_stop="47356"/>
          <exon e_start="48754" e_stop="48837"/>
          <exon e_start="49203" e_stop="49550"/>
          <exon e_start="49656" e_stop="49687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAACA-TCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCTCCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAGGTAAAAAAAAAGAACAAAAAAAATCTTATCTTGATTTTTATCATAAGGTTTCATAAAGTTCCTTTTTTTAATTGCTTTTCTCAAAGATACTTGCTTTCAGTTTATGGGTCAATTTCTTTATCTTGGGTGTCATAAAGTTCCTTTTTTTTATTGATTTATCAAGCTGTTTAAAGTTTTGTTAAATTTTAGTTTATTTGTTATTATATTTGCAGGGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATGGTGAGCCCTTTTATATATTTTGGTTTTAATTACTGTTATGTATGTATGTTTATGTGTGTGGTCTATGTGTGTGTGTGTGTGTATATATATATATATATATGTTCTTCATATAGATTGATGTAATTGAGCTAAGGAAAAACTATCTGTGCAAGTCAAGTCCAACTGTTGAATTAAGAATCTGTTATGGATTCCAAGTTGTAAGATATCTCAGTCCATAAGCAATACTAGTTAAAAAACTATTTCAGTGCTTGAAAGGTTTCATAAAATCGTGTAAGAGTTGTTATCGTGATCAAAACTAGACAAATGACAACTTATTGATATGGTAAAGCTTTACAGGATTGTTTATAAGCTATAACGTAGCCATTTGACGCTGTATCAATAACTAGTAAGATGTTTTGGATCCTGCTTTATTCGTTTATGCAGGCAACTATTTTTTCGGATTTTTGATATATAACTCTAAACAAGCGGATTGATAAATATGTTATCTTCATGATGGAGTGAGTGGAAGGGCATGTTTCGATTAGCTAGGCATGCCTGGCAAAGGCATGTTCAGGATGTGGTGTGAACTTTTAAATTTATGACGTATTTTGGATATCGATTTTGTTTTAGGATTTTATTATGTGTGCTTCATCATGAGAAATGCAACAATCCTGCAGTCAATATACAATAGATCAAAACTATAAATAATAAAAGCAAAGTCTAATACTTCCTGCAGTCTTCATTTCTTCCCTAGGCTAACAGCTTCTAGAAGGTATTAACGGAGGATTGTTTGGAGAAAGGTGCTAATGATTCTGTTAGTAATCGTTGAGAGCATACTGATGTTATATATGTTAGTTTCCGATTAGCTGCAAACCCAATGGTTTGAGATTAACCACTTCACCGGTGCACTAAGTGGATTGCTGACCCTCGCTTATGGGCTCCGGATCTCCATTTGCCCTTTGGACCATTCTGTATGGATTGAAGCAGTCCTCGAGGGCGTGGTTTGAAAGTTGAGTAAGGTCTTACTTTAGTTTGGCTACAAAAGGTGTGATTCTGGTCACACGCATTTTGTACTAAAGGGTGAGAAAGTGAGCCAGATCATAGTAAAGACCTTTGCTTCTTGTTGTTGTTTTCTTTCTTTTTTTACTTAATGCATCCCCAAAAAACCACCCCTCTTTTTTCTTGAAGAAAGGGGGCAGCGAGAGGAAAGTTTCGATATCTTTCTCATGCAGTCAATTCTGTTTTAGTTTTTAACATCACAGATGAAACTATCGAAAAGGTTTAACACAAGCAAATAAGTGTACAGCGATGTGCATATGCTCGTCTTACAGATTTCATTATGCTGTCGTTGTTCTTCCCTTTTCGTTCCTTAAGGGCAAGAAGATTCAAGTTACTAATAACTTTGTTTGGATGTGTAGGTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAGGTACTATTCAGCTGCAATTTCTTCGCGCTACCAATTTTTAGTAATCGTTCAGTTTGGAATACTTATAGCATGTCTAACAGATTTAGATGAACTCTCGAATTTGGATTTTAGATCATATGAATGACATGAAAGAACTTAGATAATCCTTTCCCATCTGTCAGGCTTGTATATACCCACGCTCCTGTTTATTATTTTCTAGAACCTCAGGAACTATGTTTCCGACTCACCCTTGGCTTTCTCCTTAGGTTTGTCAAGCCAACCTGACATGTTCAGATTGGAACACCTCGACGATGATGTAGTCAAACTAACATTTTTTCTCGAGTAGAATGCATCGAACGATCATTATAATAATTTTTTTATTGCAGGATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTCTTCACACAAACTTTACAAGTAATTGTTTTGCCAATTGACTTATTTTTCTTTGATCATCATTTATTTTGTTCCAAACCTAATCCATATGTGACAAACAAATACAAACTTTGATTTTATTATATTCTTTTTGTCTTGCTTATCATCATCAAAATGGAACAAAAAACCAAAAAAAAAAACCA</genome_strand>
        <mrna_strand>AGTAAAAGGGCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCTCCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAG....................................................................................................................................................................................................................GGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAG.............................................................................................................................................................................................................................................................................................................................................................................GATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTCTTCACACAAACTTTACAAGTAATTGTTTTGCCAATTGACTTA.........................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322983" ref_strand="+" ref_description="SGN-U322983        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | kinesin motor protein-related, KLP2 protein, Xenopus laevis, PIR:T30335 | chr3:15829725-15835848 FORWARD | Aliases: F26G5.1(evalue: 4e-34, score=119) genbank/nr: Kinesin,(evalue: 2e-36, score=139)">
      <seq>ctgtacttaatgaacttgctgaggatctgaagcaggatgttgaaatggaagataagtcatcagatattttgcataatcctatttcagaggacctaagtttgttgaggatgaagcttgaaggagcgcaggaaaagcttctaaaatctgccaataccataagtatgtttggttcattagagagagcaattgttgaggttgatgaacttgcagaagaaattgaaggactcgaaaagagcattgaagtgaaaaaacaaggatacacatccttcaagcttcagtcgtcacaaatgcttgaaaagaaagttttgcttgataataagctatcagcactaagatactccgtatcaagcttttcctcatcagttggttacttcgaacaacgggaagctcaaacaagagcaagattgaatgcttcatctacttgtctcaaccaaaagaaagcaaaattgactcatcttcaagcatctaaggttgaactcctggaagcacagatgcaggctaaacagtcagaatcagaactaagaaacatcctagcagaatcaaaatcaagattggaagacgagaatcaaaggctggaaagtgacagagttctctttgccatagataacattgataaacccgatatccaattgccagaaaggagttggcagttgagtggcaaagctactgaattactcagtctgaggaagaaaaacaaagatacagaatcaaatgaagcagattagggaaaatttggggataaagaacaaggaaatcgaagacttagacgaagaaagactgaattcagagaaagatattgaggctactgaagaggagatagataatatttcgcaatctgtaaaggagatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="61250" stop="62702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61550" g_stop="62402" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="851" r_length="851" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U322983" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61550" e_stop="62402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTACTTAATGAACTTGCTGAGGATCTGAAGCAGGATGTTGAAATGGAAGATAAGTCATCAGATATTTTGCATAATCCTATTTCAGAGGACCTAAGTTTGTTGAGGATGAAGCTTGAAGGAGCGCAGGAAAAGCTTCTAAAATCTGCCAATACCATAAGTATGTTTGGTTCATTAGAGAGAGCAATTGTTGAGGTTGATGAACTTGCAGAAGAAATTGAAGGACTCGAAAAGAGCATTGAAGTGAAAAAACAAGGATACACATCCTTCAAGCTTCAGTCGTCACAAATGCTTGAAAAGAAAGTTTTGCTTGATAATAAGCTATCAGCACTAAGATACTCCGTATCAAGCTTTTCCTCATCAGTTGGTTACTTCGAACAACGGGAAGCTCAAACAAGAGCAAGATTGAATGCTTCATCTACTTGTCTCAACCAAAAGAAAGCAAAATTGACTCATCTTCAAGCATCTAAGGTTGAACTCCTGGAAGCACAGATGCAGGCTAAACAGTCAGAATCAGAACTAAGAAACATCCTAGCAGAATCAAAATCAAGATTGGAAGACGAGAATCAAAGGCTGGAAAGTGACAGAGTTCTCTTTGCCATAGATAACATTGATAAACCCGATATCCAATTGCCAGAAAGGAGTTGGCAGTTGAGTGGCAAAGCTACTGAATTACTCAAGTCTGAGGAAGAAAAAACAAAGATACAGAATCAAATGAAGCAGATTAGGGAAAATTTGGGGATAAAGAAGAAGGAAATCGAAGACTTAAACGAAAAAAGACTGAATTCAGAGAAAGATATTGAGGCTACTGAAAAGGAGATAGAGAATATTTCGCAATCTGTAAAGGAGATGGG</genome_strand>
        <mrna_strand>CTGTACTTAATGAACTTGCTGAGGATCTGAAGCAGGATGTTGAAATGGAAGATAAGTCATCAGATATTTTGCATAATCCTATTTCAGAGGACCTAAGTTTGTTGAGGATGAAGCTTGAAGGAGCGCAGGAAAAGCTTCTAAAATCTGCCAATACCATAAGTATGTTTGGTTCATTAGAGAGAGCAATTGTTGAGGTTGATGAACTTGCAGAAGAAATTGAAGGACTCGAAAAGAGCATTGAAGTGAAAAAACAAGGATACACATCCTTCAAGCTTCAGTCGTCACAAATGCTTGAAAAGAAAGTTTTGCTTGATAATAAGCTATCAGCACTAAGATACTCCGTATCAAGCTTTTCCTCATCAGTTGGTTACTTCGAACAACGGGAAGCTCAAACAAGAGCAAGATTGAATGCTTCATCTACTTGTCTCAACCAAAAGAAAGCAAAATTGACTCATCTTCAAGCATCTAAGGTTGAACTCCTGGAAGCACAGATGCAGGCTAAACAGTCAGAATCAGAACTAAGAAACATCCTAGCAGAATCAAAATCAAGATTGGAAGACGAGAATCAAAGGCTGGAAAGTGACAGAGTTCTCTTTGCCATAGATAACATTGATAAACCCGATATCCAATTGCCAGAAAGGAGTTGGCAGTTGAGTGGCAAAGCTACTGAATTACTC-AGTCTGAGGAAG-AAAAACAAAGATACAGAATCAAATGAAGCAGATTAGGGAAAATTTGGGGATAAAGAACAAGGAAATCGAAGACTTAGACGAAGAAAGACTGAATTCAGAGAAAGATATTGAGGCTACTGAAGAGGAGATAGATAATATTTCGCAATCTGTAAAGGAGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322984" ref_strand="+" ref_description="SGN-U322984        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | kinesin motor protein-related, KLP2 protein, Xenopus laevis, PIR:T30335 | chr3:15829725-15835848 FORWARD | Aliases: F26G5.1(evalue: 1e-15, score=80.1) genbank/nr: gi|15229853|ref|NP_189991.1| kinesin-related protein [Arabidopsis thaliana] gi|11358477|pir||T48959 kinesin-like protein - Arabidopsis thaliana gi|7594566|emb|CAB88133.1| kinesin-like protein [Arabidopsis thaliana](evalue: 6e-14, score=80.1)">
      <seq>agaatcaaatgaagcagattagggaaaatttgggataaaagaagaaggaaatcgaagacttaaacgaaaaaagactgaattcagagaaagatattgaggctactgaaaaggagatagagaatatttcgcaatctgtaaaggagatgggcaacaagcttcaaagggtcatcggggagaagcagatgatctttgaaatgaaagagaacgggaagaaagagtttgagaacatgattcttgagtatcacgagagtatgtttgcagcatcgttgaaggaggaagagttgaagattttggacgaagaattgcagttggagatgagtaaaatagaagatttgcaaagagaaaaagctcttgccacaagcagaaaaactcagttgctgaatgcattatcgtgccaatcatactctttgtctgacaaggtagaggaggatctacatgacatacgaaggtcagtactagagctgaactcgttgcttggaaattgattgtttgactgacagttaattgcctgtttaactgtcaagtataaaacatcttctctaaaagaaacttctctctgttgcattgctgctgccttaatgtattgtcgatataaaattctccttacgcaaatggtgggatgtattacaaaaccatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="61955" stop="63194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62255" g_stop="62894" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U322984" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62255" e_stop="62894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCAAATGAAGCAGATTAGGGAAAATTTGGGGATAAAGAAGAAGGAAATCGAAGACTTAAACGAAAAAAGACTGAATTCAGAGAAAGATATTGAGGCTACTGAAAAGGAGATAGAGAATATTTCGCAATCTGTAAAGGAGATGGGCAACAAGCTTCAAAGGGTCATCGGGGAGAAGCAGATGATCTTTGAAATGAAAGAGAACGGGAAGAAAGAGTTTGAGAACATGATTCTTGAGTATCACGAGAGTATGTTTGCAGCATCGTTGAAGGAGGAAGAGTTGAAGATTTTGGACGAAGAATTGCAGTTGGAGATGAGTAAAATAGAAGATTTGCAAAGAGAAAAAGCTCTTGCCACAAGCAGAAAAACTCAGTTGCTGAATGCATTATCGTGCCAATCATACTCTTTGTCTGACAAGGTAGAGGAGGATCTACATGACATACGAAGGTCAGTACTAGAGCTGAACTCGTTGCTTGGAAATTGATTGTTTGACTGACAGTTAATTGCCTGTTTAACTGTCAAGTATAAAACATCTTCTCTAAAAGAAACTTCTCTCTGTTGCATTGCTGCTGCCTTAATGTATTGTCGATATAAAATTCTCCTTACGCAAATGGTGTGATGTATTACAAAACCATATTA</genome_strand>
        <mrna_strand>AGAATCAAATGAAGCAGATTAGGGAAAATTTGGGATAAAAGAAGAAGGAAATCGAAGACTTAAACGAAAAAAGACTGAATTCAGAGAAAGATATTGAGGCTACTGAAAAGGAGATAGAGAATATTTCGCAATCTGTAAAGGAGATGGGCAACAAGCTTCAAAGGGTCATCGGGGAGAAGCAGATGATCTTTGAAATGAAAGAGAACGGGAAGAAAGAGTTTGAGAACATGATTCTTGAGTATCACGAGAGTATGTTTGCAGCATCGTTGAAGGAGGAAGAGTTGAAGATTTTGGACGAAGAATTGCAGTTGGAGATGAGTAAAATAGAAGATTTGCAAAGAGAAAAAGCTCTTGCCACAAGCAGAAAAACTCAGTTGCTGAATGCATTATCGTGCCAATCATACTCTTTGTCTGACAAGGTAGAGGAGGATCTACATGACATACGAAGGTCAGTACTAGAGCTGAACTCGTTGCTTGGAAATTGATTGTTTGACTGACAGTTAATTGCCTGTTTAACTGTCAAGTATAAAACATCTTCTCTAAAAGAAACTTCTCTCTGTTGCATTGCTGCTGCCTTAATGTATTGTCGATATAAAATTCTCCTTACGCAAATGGTGGGATGTATTACAAAACCATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318957" ref_strand="+" ref_description="SGN-U318957        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | calcium-binding EF hand family protein, similar to regulator of gene silencing calmodulin-related protein GI:12963415 from (Nicotiana tabacum); contains INTERPRO:IPR002048 calcium-binding EF-hand domain | chr1:28771644-28772411 REVERSE | Aliases: F28O16.2, F28O16_2(evalue: 6e-17, score=84) genbank/nr: calmodulin-like(evalue: 4e-41, score=170)">
      <seq>aagagtactatacggccaaacacttataatttccaaagttttctttgttgatttcaaagttcaacccttttctcacttaactatattctacttatgtgtatggtatcatcagtgtctgtttccacagctgagaaagagtcttttttctcgagattacgaaatatgtttcatttcagaaggaatgaagatgagaagaagacaacgacaacaacaacaacgagagctgctgctgctgcagcaactactactactaactgtgttcctgtgagtgacaatggtggtagtagtaacaagggagagttagagagggtgtttacgtactttgatgagaatggagatggaaaagtgtcacctgcagagttgaggaagtgtgtgaaggcggtaggaggtgagctgacggtggaggaggcggagatggcagtgaggctatcggattctgatggggacggattattgggcattgaggattttacgaaactgatggaaggaatggaggaagagaggaataaagagggtgagttgatgggagcatttggaatgtatgaaacagaaggatacattactcctaagagcttgaagaacatgttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="64271" stop="63081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63971" g_stop="63381" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U318957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63971" e_stop="63381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTACTATACGGCCAAACACTTATAATTTCCAAAGTTTTCTTTGTTGATTTCAAAGTTCAACCCTTTTCTCACTTAACTATATTCTACTTATGTGTATGGTATCATCAGTGTCTGTTTCCACAGCTGAGAAAGAGTCTTTTTTCTCGAGATTACGAAATATGTTTCATTTCAGAAGGAATGAAGATGAGAAGAAGACAACGACAACAACAACAACGAGAGCTGCTGCTGCTGCAGCAACTACTACTACTAACTGTGTTCCTGTGAGTGACAATGGTGGTAGTAGTAACAAGGGAGAGTTAGAGAGGGTGTTTACGTACTTTGATGAGAATGGAGATGGAAAAGTGTCACCTGCAGAGTTGAGGAAGTGTGTGAAGGCGGTAGGAGGTGAGCTGACGGTGGAGGAGGCGGAGATGGCAGTGAGGCTATCGGATTCTGATGGGGACGGATTATTGGGCATTGAGGATTTTACGAAACTGATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGGGTGAGTTGATGGGAGCATTTGGAATGTATGAAACAGAAGGATACATTACTCCTAAGAGCTTGAAGAACATGTTGAGT</genome_strand>
        <mrna_strand>AAGAGTACTATACGGCCAAACACTTATAATTTCCAAAGTTTTCTTTGTTGATTTCAAAGTTCAACCCTTTTCTCACTTAACTATATTCTACTTATGTGTATGGTATCATCAGTGTCTGTTTCCACAGCTGAGAAAGAGTCTTTTTTCTCGAGATTACGAAATATGTTTCATTTCAGAAGGAATGAAGATGAGAAGAAGACAACGACAACAACAACAACGAGAGCTGCTGCTGCTGCAGCAACTACTACTACTAACTGTGTTCCTGTGAGTGACAATGGTGGTAGTAGTAACAAGGGAGAGTTAGAGAGGGTGTTTACGTACTTTGATGAGAATGGAGATGGAAAAGTGTCACCTGCAGAGTTGAGGAAGTGTGTGAAGGCGGTAGGAGGTGAGCTGACGGTGGAGGAGGCGGAGATGGCAGTGAGGCTATCGGATTCTGATGGGGACGGATTATTGGGCATTGAGGATTTTACGAAACTGATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGGGTGAGTTGATGGGAGCATTTGGAATGTATGAAACAGAAGGATACATTACTCCTAAGAGCTTGAAGAACATGTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336675" ref_strand="-" ref_description="SGN-U336675        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-related protein, putative, similar to regulator of gene silencing calmodulin-related protein GI:12963415 from (Nicotiana tabacum) | chr5:16959804-16960594 REVERSE | Aliases: MDH9.7, MDH9_7(evalue: 8e-36, score=148) genbank/nr: gi|49425165|gb|AAT65969.1| regulator of gene silencing [Lycopersicon esculentum] (evalue: 9e-87, score=323)">
      <seq>tagtaattatatacttggttcattgaataatttaacaaataaagaagtaaaacatgctccaattcatgaaatatggactttacaaatatgaaatgaaaaatctcaatgaattatttgatcacaagaatcctatttagtaattacacaaatatttctctttgaactcttctaacatgtcatcataattttaaactcatcaaaactaagaactccatctccattgatatcaaatctccttatcataaccttgcatttatcaatggaggttgactcgccgagtcgactcaacatcatcttcaagctcttaggagtaatgtatccttccatttcatacattccaaatgctcccatcaactcactctctttattcctctcttcctccattccttccattaacttcgtaaaatcctcaaaccctaacaacccgtccccatcagaatccgatagcctcaccaccatctccgcctcctccaccgttatctcacctcctaccgccttcatgcatctccttagctccattggtgatacctttccatctccattctcatcaaagtacgtaaataccctctctaactcaccactattgctatcactcaccgataaacgatcaatagtactagtactagtaatagttgttgttgttgttacactctcatgttccttcttaggagtattagccttctttagaaaaaaccttttacgtaatcttgagaaaaaagattccttttcagccatggaaacagaaactaactccatattagacatgctatagatgtaagtaagaaaatgagtaagtgatataagagttttaactttgaaacaaagaaatcttaggaaagttatataattgtttgttgttgaaagacaagaaataaaggatttatatgatgatcaattcggccgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="64700" stop="68390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65000" g_stop="65314" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65315" i_stop="67528" i_length="2214">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67529" g_stop="68074" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="863" r_length="548" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U336675" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336675" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65000" e_stop="65314"/>
          <exon e_start="67529" e_stop="68074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAATTATATACTTGGTTCATTGAATAATTTAACAAATAAAGAAGTAAAACATGCTCCAATTCATGAAATATGGACTTTACAAATATGAAATGAAAAATCTCAATGAATTATTTGATCACAAGAATCCTATTTAGTAATTACACAAATATTTCTCTTTGAACTCTTCTAACATGTCATCATAATTTTAAACTCATCAAAACTAAGAACTCCATCTCCATTGATATCAAATCTCCTTATCATAACCTTGCATTTATCAATGGAGGTTGACTCGCCGAGTCGACTCAACATCATCTTCAAGCTCTTAGGAGTAATGTATCCTTCCATTTCATACATTCCAAATGCTCCCATCAACTCACTCTCTTTATTCCTCTTTTCTTCCATTCCTTCCATTAACTTCGTAAAATCCTCAAACCCTAACAACCCGTCCCCATCAGAATCCGATAGCCTCACCACCATCTCCGCCTCCTTCACCGTTATCTCACCTCCTACCGCCTTCATGCATCTCCTTAGCTCCATTGGTGACACCTTCCCATCTCCATTCTCATCAAAGTACGTAAATACCCTAACTCTCCATTGTTACTAGTAATAGTAGTGGCTGTTGTTGTTGCTGTTGTTGTCGTCTTCTTCTCGTCTTTCTTCTTTTTGAGATGAAACATATTCCGTAATCTTGAGAAAAAAGATTCCTTTACAGCTGTGGATATGGTGGGTCGTTAATTAATCAGTTTTAAAAAGAGGGATGAATTTCGACCTTGCTTTGAATCGTCAGGCTAGTAAAACTCTACTTCTAAAACAATCGTTAAGGTCATTCACTAGATACTGACGCGATACACATGCTAGTAAACAAATATACCTTTGAACTACTTTTTCTTTTATTCAAGAAAGTTTGAATATGAGTAAATGGAGTTGAACTTGAAATTAACAAAGAAAACTATGTAATAAAGACAAGAAGTCAAGGATATGGGAATGAAGGGAGAAGAATGGGCTATTTATAGTTAATGGGGTTGAAATTTGTATGGCCAATTGGTCTTGGTAGAAAAAAAAAGTAAACAGGAGACACGTTATAAAATATAATATAAAGTTTTTATAACATAATATAATTAATGACTACGTGTTTGATGTGTGTGTATGTATGTGTGTCTTTGGGGATTGAAATCTTTATATTATATTTTAAATATTGTGATGCCAAATTGACGTGTATCCTTAACTCTTATGACATCCTAAATAATGTCCTTTCTTTCCATTTCTTCTTGGAGTTCAATTTCTAATATGTGGGTTTTTAGAGTTTTTTATTTTTAATTTTTTGAAAAATAAGTGACTTTTATCTATTTTTTGATGTTTGGTTAGTAAATAGAAAATATAATTTTGAGAGCATTTAGTATAGTATAGGCAAATAATATGGCTAAGACTAAGACTTGAACTCAACATGAAACTCGACCCTGACCTTGTGTCGAGACCTCACATCTGGCCCAACCCCAACCTCAACTTGAAAATCTTACCCTTAGCTCTGATCCTGACTCTTGACTCAATCCCCTAACATGGATACCAAACCCGATCTTTAATCCACGACTCAAAATTTGGACATGATCCTCGACACGACTCAGAACTTGAGCCTTGGTTTGACCCTAACTAGAATCCAAGCTCACTCTTTGGTTTTGACTTTTGAATCAATACCTAATATCAATCACGACTCTAAACTCAAACCTTGTCTCGACCTCAACTAGGGACTCAACCCCCCACCCCCCGCCCGACCCTTATCATCCACTTTGAATCAATACTTGATCCCCCAACTTTGATATTGACCCAAGACTCAACCATAGCTTGTGACTCGATCCTTGAATCGAGACATGGATCTTGACCCTAGCTTGACCTCGACTAGGTTTCTAACCTATATTTTGATCCGCAATCTAATCTCGACAAGGGGCCCTATAAACGATACTCCTTTTAGGCCATATTAAGTGAACTATTGGAACATTCACATCCTTTTTTAAGAATACATTTCAGGACAAAATTCAAAGACTACTTTCCATTATCATACCTTTTGATTATTTTAAACTATTTATGAAAAAAATAAAAACTCCCAACAATTCTCTAGATATTTGAAAATTCACTTATTTTGAACTATGAAAAAAAATATCAAACAATTTACTTAATATGAAACCAGACTAGAGAAATACTTTTCAATATACACTATGAAAGAACAATAATAACATATTCACTTCTCCAAGTTAGTAAAAACCAAGGAATTGTTTCACAAATTTGAATCTATGAATGTATAAATCTCAACCAAAAACCATTTATATAATTACTAGAAACAAGAAGAAATAAAATAACAATAACAAGGCCAATAGGCCAAAAGAATTATGTACACAAATATCTCTTCTAACTTGTCATCATAACTTTGAACTCATCAAAGCTAAGAACTCCATCTCCATTAGTATCAAATCTCCTTATCATAACCTTGCATTTATCAATGGAGGTTGACTCGCCGAGTCGACTCAACATCATCTTCAAGCTCTTAGGAGTAATGTATCCTTCCATTTCATACATTCCAAATGCTCCCATCAACTCACTCTCTTTATTCCTCTCTTCCTCCATTCCTTCCATTAACTTCGTAAAATCCTCAAACCCTAACAACCCGTCCCCATCAGAATCCGATAGCCTCACCACCATCTCCGCCTCCTCCACCGTTATCTCACCTCCTACCGCCTTCATGCATCTCCTTAGCTCCATTGGTGATACCTTTCCATCTCCATTCTCATCAAAGTACGTAAATACCCTCTCTAACTCACCACTATTACTATCACTCACCGATAAACGATCAATAGTACTAGTACTAGTAATAGTTGTTGTTGTTGTTACACTCTCATGTTCCTTCTTAGGAGTATTAGCCTTCTTTAGAAAAAACCTTTTACGTAATCTTGAGAAAAAAGATCCCTTTTCAGCCATGGAAACAGTAACTAACACCATATTAGACATG--GTAGATGTAAGTAAGAAAATGAGTAAGTGATATAAGAGTTTTAACTTTGAAACAAAGAAATCTTAGGAAAGTTATATAATTTTTTGTTGTTGAAA</genome_strand>
        <mrna_strand>TAGTAATTATATACTTGGTTCATTGAATAATTTAACAAATAAAGAAGTAAAACATGCTCCAATTCATGAAATATGGACTTTACAAATATGAAATGAAAAATCTCAATGAATTATTTGATCACAAGAATCCTATTTAGTAATTACACAAATATTTCTCTTTGAACTCTTCTAACATGTCATCATAATTTTAAACTCATCAAAACTAAGAACTCCATCTCCATTGATATCAAATCTCCTTATCATAACCTTGCATTTATCAATGGAGGTTGACTCGCCGAGTCGACTCAACATCATCTTCAAGCTCTTAGGAGTAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCTTCCATTTCATACATTCCAAATGCTCCCATCAACTCACTCTCTTTATTCCTCTCTTCCTCCATTCCTTCCATTAACTTCGTAAAATCCTCAAACCCTAACAACCCGTCCCCATCAGAATCCGATAGCCTCACCACCATCTCCGCCTCCTCCACCGTTATCTCACCTCCTACCGCCTTCATGCATCTCCTTAGCTCCATTGGTGATACCTTTCCATCTCCATTCTCATCAAAGTACGTAAATACCCTCTCTAACTCACCACTATTGCTATCACTCACCGATAAACGATCAATAGTACTAGTACTAGTAATAGTTGTTGTTGTTGTTACACTCTCATGTTCCTTCTTAGGAGTATTAGCCTTCTTTAGAAAAAACCTTTTACGTAATCTTGAGAAAAAAGATTCCTTTTCAGCCATGGAAACAGAAACTAACTCCATATTAGACATGCTATAGATGTAAGTAAGAAAATGAGTAAGTGATATAAGAGTTTTAACTTTGAAACAAAGAAATCTTAGGAAAGTTATATAATTGTTTGTTGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318959" ref_strand="+" ref_description="SGN-U318959        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-related protein, putative, similar to regulator of gene silencing calmodulin-related protein GI:12963415 from (Nicotiana tabacum) | chr5:16959804-16960594 REVERSE | Aliases: MDH9.7, MDH9_7(evalue: 3e-34, score=142) genbank/nr: gi|49425165|gb|AAT65969.1| regulator of gene silencing [Lycopersicon esculentum] (evalue: 9e-69, score=258)">
      <seq>tctttattacatagttttctttgttaatttcaagttcaactccatttactcatattcaaactttcttgaataaaagaaaaagtagttcaaaggtatatttgtttactagcatgtgtatcgcgtcagtatctagtgaatgaccttaacgattgttttagaagtagagttttactagcctgacgattcaaagcaaggtcgaaattcatccctctttttaaaactgattaattaacgacccaccatatccacagctgtaaaggaatcttttttctcaagattacggaatatgtttcatctcaaaaagaagaaagacgagaagaagacgacaacaacagcaacaacaacagccactactattactagtaacaatggagagttagggtatttacgtactttgatgagaatggagatgggaaggtgtcaccaatggagctaaggagatgcatgaaggcggtaggaggtgagataacggtgaaggaggcggagatggtggtgaggctatcggattctgatggggacgggttgttagggtttgaggattttacgaagttaatggaaggaatggaagaaaagaggaataaagagagtgagttgatgggagcatttggaatgtatgaaatggaaggatacattactcctaagagcttgaagatgatgttgagtcgactcggcgagtcaacctccattgataaatgcaaggttatgataaggagatttgatatcaatggagatggagttcttagttttgatgagtttaaaattatgatgacatgttagaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="66244" stop="64863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65944" g_stop="65163" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U318959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65944" e_stop="65163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTATTACATAGTTTTCTTTGTTAATTTCAAGTTCAACTCCATTTACTCATATTCAAACTTTCTTGAATAAAAGAAAAAGTAGTTCAAAGGTATATTTGTTTACTAGCATGTGTATCGCGTCAGTATCTAGTGAATGACCTTAACGATTGTTTTAGAAGTAGAGTTTTACTAGCCTGACGATTCAAAGCAAGGTCGAAATTCATCCCTCTTTTTAAAACTGATTAATTAACGACCCACCATATCCACAGCTGTAAAGGAATCTTTTTTCTCAAGATTACGGAATATGTTTCATCTCAAAAAGAAGAAAGACGAGAAGAAGACGACAACAACAGCAACAACAACAGCCACTACTATTACTAGTAACAATGGAGAGTTAGGGTATTTACGTACTTTGATGAGAATGGAGATGGGAAGGTGTCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGAAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAAGAAAAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATATCAATGGAGATGGAGTTCTTAGTTTTGATGAGTTTAAAATTATGATGACATGTTAGAAGAG</genome_strand>
        <mrna_strand>TCTTTATTACATAGTTTTCTTTGTTAATTTCAAGTTCAACTCCATTTACTCATATTCAAACTTTCTTGAATAAAAGAAAAAGTAGTTCAAAGGTATATTTGTTTACTAGCATGTGTATCGCGTCAGTATCTAGTGAATGACCTTAACGATTGTTTTAGAAGTAGAGTTTTACTAGCCTGACGATTCAAAGCAAGGTCGAAATTCATCCCTCTTTTTAAAACTGATTAATTAACGACCCACCATATCCACAGCTGTAAAGGAATCTTTTTTCTCAAGATTACGGAATATGTTTCATCTCAAAAAGAAGAAAGACGAGAAGAAGACGACAACAACAGCAACAACAACAGCCACTACTATTACTAGTAACAATGGAGAGTTAGGGTATTTACGTACTTTGATGAGAATGGAGATGGGAAGGTGTCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGAAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAAGAAAAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATATCAATGGAGATGGAGTTCTTAGTTTTGATGAGTTTAAAATTATGATGACATGTTAGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318958" ref_strand="+" ref_description="SGN-U318958        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-related protein, putative, similar to regulator of gene silencing calmodulin-related protein GI:12963415 from (Nicotiana tabacum) | chr5:16959804-16960594 REVERSE | Aliases: MDH9.7, MDH9_7(evalue: 1e-35, score=147) genbank/nr: gi|49425165|gb|AAT65969.1| regulator of gene silencing [Lycopersicon esculentum] (evalue: 7e-88, score=326)">
      <seq>acaacaaaaaattatataactttcctaagatttctttgtttcaaagttaaaactcttatatcacttactcattttcttacttacatctatagcatgtctaatatggagttagtttctgtttccatggctgaaaaggaatcttttttctcaagattacgtaaaaggttttttctaaagaaggctaatactcctaagaaggaacatgagagtgtaacaacaacaacaactattactagtactagtactattgatcgtttatcggtgagtgatagcaatagtggtgagttagagagggtatttacgtactttgatgagaatggagatggaaaggtatcaccaatggagctaaggagatgcatgaaggcggtaggaggtgagataacggtggaggaggcggagatggtggtgaggctatcggattctgatggggacgggttgttagggtttgaggattttacgaagttaatggaaggaatggaggaaaagaggaataaagagagtgagttgatgggagcatttggaatgtatgaaatggaaggatacattactcctaagagcttgaagatgatgttgagtcgactcggcgagtcaacctccattgataaatgcaaggttatgataaggagatttgatactaatggagatggagttcttagctttgatgagttcaaagttatgatgacaagttagaagagatatttgtgtacataattcttttggcctattggccttgttattgttattttatttcttcttgtttctagtaattatataaatggtttttggttgagatttatacattcatagattcaaatttgtgaaacaattccttggtttttacttaaaaaaaaaaaaaaaaacacaaaaaaaggaaaaaaaaaaagatgaatgaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="68369" stop="66928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68069" g_stop="67230" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="850" polyA_stop="862"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U318958" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68069" e_stop="67230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAAAAAATTATATAACTTTCCTAAGATTTCTTTGTTTCAAAGTTAAAACTCTTATATCACTTACTCATTTTCTTACTTACATC--TACCATGTCTAATATGGTGTTAGTTACTGTTTCCATGGCTGAAAAGGGATCTTTTTTCTCAAGATTACGTAAAAGGTTTTTTCTAAAGAAGGCTAATACTCCTAAGAAGGAACATGAGAGTGTAACAACAACAACAACTATTACTAGTACTAGTACTATTGATCGTTTATCGGTGAGTGATAGTAATAGTGGTGAGTTAGAGAGGGTATTTACGTACTTTGATGAGAATGGAGATGGAAAGGTATCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGGAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATACTAATGGAGATGGAGTTCTTAGCTTTGATGAGTTCAAAGTTATGATGACAAGTTAGAAGAGATATTTGTGTACATAATTCTTTTGGCCTATTGGCCTTGTTATTGTTATTTTATTTCTTCTTGTTTCTAGTAATTATATAAATGGTTTTTGGTTGAGATTTATACATTCATAGATTCAAATTTGTGAAACAATTCCTTGGTTTTTACT</genome_strand>
        <mrna_strand>ACAACAAAAAATTATATAACTTTCCTAAGATTTCTTTGTTTCAAAGTTAAAACTCTTATATCACTTACTCATTTTCTTACTTACATCTATAGCATGTCTAATATGGAGTTAGTTTCTGTTTCCATGGCTGAAAAGGAATCTTTTTTCTCAAGATTACGTAAAAGGTTTTTTCTAAAGAAGGCTAATACTCCTAAGAAGGAACATGAGAGTGTAACAACAACAACAACTATTACTAGTACTAGTACTATTGATCGTTTATCGGTGAGTGATAGCAATAGTGGTGAGTTAGAGAGGGTATTTACGTACTTTGATGAGAATGGAGATGGAAAGGTATCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGGAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAGGAAAAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATACTAATGGAGATGGAGTTCTTAGCTTTGATGAGTTCAAAGTTATGATGACAAGTTAGAAGAGATATTTGTGTACATAATTCTTTTGGCCTATTGGCCTTGTTATTGTTATTTTATTTCTTCTTGTTTCTAGTAATTATATAAATGGTTTTTGGTTGAGATTTATACATTCATAGATTCAAATTTGTGAAACAATTCCTTGGTTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332669" ref_strand="+" ref_description="SGN-U332669        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | elongation factor Tu family protein, similar to eukaryotic translation elongation factor 2 GB:NP_001952 (Homo sapiens) | chr3:8160276-8163323 REVERSE | Aliases: MXC7.1(evalue: 1e-44, score=176) genbank/nr: Elongation(evalue: 2e-48, score=194)">
      <seq>gaagcttccaactgcattgacaaagctgcttgatgaaagttctgagttgcttgaagacatcattggaggtaaatctctacaggcttgtagaagctcggaaactctcagaggtaacgttgtagaagatgagaatccaattgaagcatttaagaaacgcctaatagatgctgtggagagcgacttttctactggatttgctgatacagaaaaggataggattgataaatgtaagaaaacatggcaaaaattcttaaaaaggatctgggctttagggcctagacaggtcggtcccaacattctcctcactccggatgtgaaaggaaagagcgccgatgtttctattcttataaagggttccccttatgtatcgaaaaaattgggatttacggatgacaatgatgatagcagcgcatcaccagaatcatcaaccagtttggatccgacccttttacgagaagctgagaatcttgaaagcagtatattatctggatttcagttagctacagcatctggccctttatgtgatgagccaatgtggggtttggcatttgttattgaagcttccatatctccattagctacgcaaccaaatgatagtgagaccggccctattccacagcctgaacaatatgggctcttacctggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="72702" stop="71455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72402" g_stop="71755" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U332669" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72402" e_stop="71755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTTCCAACTGCATTGACAAAGCTGCTTGATGAAAGTTCTGAGTTGCTTGAAGACATCATTGGAGGTAAATCTCTACAGGCTTGTAGAAGCTCGGAAACTCTCAGAGGTAACGTTGTAGAAGATGAGAATCCAATTGAAGCATTTAAGAAACGCCTAATAGATGCTGTGGAGAGCGACTTTTCTACTGGATTTGCTGATACAGAAAAGGATAGGATTGATAAATGTAAGAAAACATGGCAAAAATTCTTAAAAAGGATCTGGGCTTTAGGGCCTAGACAGGTCGGTCCCAACATTCTCCTCACTCCGGATGTGAAAGGAAAGAGCGCCGATGTTTCTATTCTTATAAAGGGTTCCCCTTATGTATCGAAAAAATTGGGATTTACGGATGACAATGATGATAGCAGCGCATCACCAGAATCATCAACCAGTTTGGATCCGACCCTTTTACGAGAAGCTGAGAATCTTGAAAGCAGTATATTATCTGGATTTCAGTTAGCTACAGCATCTGGCCCTTTATGTGATGAGCCAATGTGGGGTTTGGCATTTGTTATTGAAGCTTCCATATCTCCATTAGCTACGCAACCAAATGATAGTGAGACCGGCCCTATTCCACAGCCTGAACAATATGGGCTCTTACCTGGACA</genome_strand>
        <mrna_strand>GAAGCTTCCAACTGCATTGACAAAGCTGCTTGATGAAAGTTCTGAGTTGCTTGAAGACATCATTGGAGGTAAATCTCTACAGGCTTGTAGAAGCTCGGAAACTCTCAGAGGTAACGTTGTAGAAGATGAGAATCCAATTGAAGCATTTAAGAAACGCCTAATAGATGCTGTGGAGAGCGACTTTTCTACTGGATTTGCTGATACAGAAAAGGATAGGATTGATAAATGTAAGAAAACATGGCAAAAATTCTTAAAAAGGATCTGGGCTTTAGGGCCTAGACAGGTCGGTCCCAACATTCTCCTCACTCCGGATGTGAAAGGAAAGAGCGCCGATGTTTCTATTCTTATAAAGGGTTCCCCTTATGTATCGAAAAAATTGGGATTTACGGATGACAATGATGATAGCAGCGCATCACCAGAATCATCAACCAGTTTGGATCCGACCCTTTTACGAGAAGCTGAGAATCTTGAAAGCAGTATATTATCTGGATTTCAGTTAGCTACAGCATCTGGCCCTTTATGTGATGAGCCAATGTGGGGTTTGGCATTTGTTATTGAAGCTTCCATATCTCCATTAGCTACGCAACCAAATGATAGTGAGACCGGCCCTATTCCACAGCCTGAACAATATGGGCTCTTACCTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338044" ref_strand="+" ref_description="SGN-U338044        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:11627311-11628252 FORWARD | Aliases: T22O13.5, T22O13_5(evalue: 2e-06, score=50.8) genbank/nr: gi|21617979|gb|AAM67029.1| unknown [Arabidopsis thaliana](evalue: 0.0001, score=50.8)">
      <seq>caatttctctcccacttgtttacgaagagcgtttttagtgtgaatttggtaatgatcggccggcgattttttggtatgtgattcgtcggaatttaacggcgatgactgggcataatatcgtggtggagtcatcggcggtaaatgagagaaaagaactatcgagaacgacgacggcgattacgacgattacgacgagggaggatgagaaacgaggcggaggtggaaatcagcataaaaggataggagaaatggcgggagggacggcggcggagtgtgcgatggtatgttgttgttgtccgtgcacggtgctgcactttctcctacttgctctgtataaagttccgacgggactttgccggaaagcatggaggagtaagaaccagaagaaggtgttgaagaagaaaaacggcgctactaattctcctggagtttactacaccgacgatgataaggattatttcaatggcggcggtaacgtgaacagaggatcatcggaaacagccgactttgaaacggagatgtggcaccgattttacgatggcgctggatttggaaggagctcatctcataatgaattataagaagaactacaacggccacatcaatgattctcccggtgatactatatctacatcgataacgattgttcctatgtaaccggcgacggctaggatcatcggaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="77955" stop="76669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77655" g_stop="76969" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U338044" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77655" e_stop="76969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCTCTCCCACTTGTTTACGAAGAGCATTTTTAGTGTGAATTTGGTAATGATCGGCCGGCGATTTTTTTGTATGTGATTCGTCGGAGTTTAACGGCGATGACTATGCAGAATATCGTGGTGGAGTCATCGGCGGTAAATGAGAGAAAAGAACTATCGAGAACGACGACGGCGATTACGACGATTACGACGAGGGAGGATGAGAAACGAGGCGGAGGCGGAAATCAGCATAAAAGGATAGGAGAAGTGGCGGGAGGGACGGCGGCGGAGTGTGCGATGGTATGTTGTTGTTGTCCGTGCACGGTGCTGCACTTTCTCCTACTTGCTCTGTATAAAGTTCCGACGGGACTTTGCCGGAAAGCATGGAGGAGTAAGAAGCAGAAGAAGGTTTTGAAGAAGAAAAACAGCACTAATAATTCTCCTGGTGTTTACTACACCGACGATGATAAGGATTATTTCGATGGCGGCGGTAACGTAAACAGAGGATCATCGGAAACAGCCGAATTTGAAACGGAGATGTGGCACCGATTTTACGATGGCGCTGGATTTGGAAGGAGCTCATCTCAAAAGGAATTAGAAGAAGAACAACAACAGCAACATCAATGATTCTCCCGGTGATTACTATATCTACATCGATAAGGATTGTTCCAATGTAACCGGCGACGGCGAGGATCATCGGAAATGG</genome_strand>
        <mrna_strand>CAATTTCTCTCCCACTTGTTTACGAAGAGCGTTTTTAGTGTGAATTTGGTAATGATCGGCCGGCGATTTTTTGGTATGTGATTCGTCGGAATTTAACGGCGATGACTGGGCATAATATCGTGGTGGAGTCATCGGCGGTAAATGAGAGAAAAGAACTATCGAGAACGACGACGGCGATTACGACGATTACGACGAGGGAGGATGAGAAACGAGGCGGAGGTGGAAATCAGCATAAAAGGATAGGAGAAATGGCGGGAGGGACGGCGGCGGAGTGTGCGATGGTATGTTGTTGTTGTCCGTGCACGGTGCTGCACTTTCTCCTACTTGCTCTGTATAAAGTTCCGACGGGACTTTGCCGGAAAGCATGGAGGAGTAAGAACCAGAAGAAGGTGTTGAAGAAGAAAAACGGCGCTACTAATTCTCCTGGAGTTTACTACACCGACGATGATAAGGATTATTTCAATGGCGGCGGTAACGTGAACAGAGGATCATCGGAAACAGCCGACTTTGAAACGGAGATGTGGCACCGATTTTACGATGGCGCTGGATTTGGAAGGAGCTCATCTCATAATGAATTATAAGAAGAACTACAACGGCCACATCAATGATTCTCCCGGTGA-TACTATATCTACATCGATAACGATTGTTCCTATGTAACCGGCGACGGCTAGGATCATCGGAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321146" ref_strand="+" ref_description="SGN-U321146        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:2684237-2685620 FORWARD | Aliases: T27G7.26(evalue: 2e-56, score=215) genbank/nr: gi|18390902|ref|NP_563819.1| expressed protein [Arabidopsis thaliana] gi|15450427|gb|AAK96507.1| At1g08480/T27G7_10 [Arabidopsis thaliana] gi|16974435|gb|AAL31221.1| At1g08480/T27G7_10 [Arabidopsis thaliana](evalue: 1e-54, score=215)">
      <seq>ggcgattggcggccaatcggccgaattgaaaagccatggctgaagaagactctgtatccaagtctttcttaaggagacactgggaaggttacaaggagttttggggtgagagattctcctttttggataactattcaaggttcatcaaacgcgataagccattaccgtcgtggtctgaagctgatgtggaggagttcattgcttctgagccagttcatggaccaacactgaagactgctagggaagcagctaagtttggtgctgtaggaggcctacttggagctgtttcaactgcaggagttacatggaagtactcaaggagtctgcatggtactgcattgtcccttggagctggagctgtctttggctggacattcggacaggaagtcgccaaccaccggctgcagctatacaggatggatacaatggcttcacaggtgaagttcatggaatggtggcagaacaaagtcgaacgacagtcttaattttctctcttcctgtacgagatttgaagaaacaaaaactctggatttgctcgttagcgcgataacacagtcattttgttattggcaataaaaatttgttgacagtgttcaacttgtatctggtgaattgaaatttttgtgctctaggttgtgcttttgactatgagattttgatgtttgtttgcctacaaaatggctataatgaagtgcaatttatggctttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="82423" stop="78555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82124" g_stop="81926" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="227" r_length="199" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79901" g_stop="79799" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="330" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79798" i_stop="79236" i_length="563">
            <donor d_prob="0.290" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79235" g_stop="78845" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="721" r_length="391" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="722" polyA_stop="749"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U321146" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82124" e_stop="81926"/>
          <exon e_start="79901" e_stop="79799"/>
          <exon e_start="79235" e_stop="78845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCCATGGCTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACAGTATGCATTCATATCCAATTTGGGATAAAGATATCTTTTTTCTTAATATTTATGTTATTTGGGTGTTTTTCCTATTTGGGTTTTCATTGATTTGGCTATTGGTTTGATCTGTATGGTTTTTATGTGCATTTACAGTTGTTTGGGTGTTTTCCTATCTGAGTTTTCATTGATTTAGCTGTTGTTTTGATCTGTACGCTTATATCTTTATGCCCTTTTAGCTATGTGTGTGGTGATTTTGATTTGATGTTGAGGAGTTTATTGCTTTCTGACCCAGTTTATGGACCAATTGTATGCTTTCATTTCTGATTTGTTCTATCTTTTTGCTGAATAGTTTATGTGCATTTACAGTTATTTGGGTGTTTCCCTTATCTGGTTCTTTTCTGTGTGTGTACATTTTTTGAGATTTTCTCTGTATGTGTGTTGAAGCTGATGTTGAGGAGTTCATTGTTTTTGGTTTAGGAAGTTCTTTCATTTCCGATTGTTCTCTTTTTTTTCTAAATTGTATGTGCATTTACAGTTATCTGGGGTTTCCCGTACCTGTGTTTTCATTGATTTAACTGTTTCTTTATCCATTTGTTTCTGTTGTTATGCCCTTTTAGCTTTTAGATTGAAGATGCTCTTTGGTTTTGGATTGAGTCAATGCGTCGTGCTCGTTTCTTGGGTATGTGGCAATATTATTCTCTGTCTATGTCTGTTTGCTATTGTTTTAACATCTTATTCTTGGGGCGGGTAAGTTTTGGAGAAAATGGAGTTCTGTAGTCATTGTCCCTTTGAGCTCTTTTATTGCTTAGCAAAATTTTAGGACAGAAACTTAGGGCTGTAATATCGTTCGACGAGGAGAACTTGCTTTAGGATGTTGTTATGCATAGAGTGCCTCCATTACTATTGGCTGCTTGTTTGATTTTGGCAATGTTGGGGTCTTTGGTGTTTAATTGGACTTCCTTTAATTGCTTGAGTAACAAAATTATTTCTTTTTCATTCTCTAGAATTGCGACTTATACGTTCTGTCCAAGTTTGAACTTAATACGTGTTTCTTGAATCTTTGAAATGCGTTTTCCTATGATTAACTTTATCCTGACTGTTCTTGAATCGATTAGTTACATGATGATTAACTTGGCTCTGTTGCTTCACAATTTCTGCCAAATTTACTGTGTGAACTTTGCTTTCTTGTGTTCCGGTTACCTACTGGTTTAGGATATTGCCTCTACCGTGCCATGGTGGTCAATTATAATCCTTCATATTGCTTTGGGATCTAAGCTATCCGTATGTTTAGCCATTTGTTGCTTTGTATCTTTTGGCTCTTGATTTCTGTGTTTTGTGCTCTTTAAAGCTGATTCCAATAGCCTGAAGTTTTATGGAATTCTTTTTAATCAAGGAGAAGGAGTTTGTTGGGAATGAATTGTTGGAGGAACCTTGTAATACATGAAGGCACTGTATAAAATATTAGTACATCCTGCAATTGTGCTTCACATATCGATCCCGAATGTGTATATAAAATGGTTGCAGTGGGAAGGCTACATGCTTTATTCACTTTATTAAAAAATGGCTTTATGCTTTATCCAAACCTTATCTTTCTTAATTGGAGAAAGCTCTCCCTTGCAAGGGGCAAAAAGAAATGTGGAAGGCAACATGGAAGAGGGATTGTCTTTCCAAAGTCTATGTTTGGAGTTAATGGTGCAATGTCTTCACTTTTACCATCTATTTGGTTTGCTAAATTCTAGAAAGATTATTGAACTAGTCTGGTCTCTATCACTTATCTGGGCATAATGAGGACATCTACTTGTTTTTCTCTCGGATTGTCTATTTGCCTGAGTGCACAAAAGGACATGCCTAATTTTACTCGTGATATTGCTTTCGTAATGCTAAGAAATTGCACATGTGCTCTATTTTCCTTTTATTATAATCTGTCCCTAGAGCCCTGCTGATGCTGTTTCCTTTCAGTATCCCGTGTAACCATTATGTTCCTCCATTTTTTCCTTTTCGTTAGTGGAGGCTCATGAGCTTTTTGATACTATTCTTTCCAGCTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATGGTATGTTAGGTTTTTGACAACGACTCCCCTCCCTCCAATTTAAACCACGAGAATGCTACTACAACTGAGAGCCCAAAGCTCTAGGCATAGGTTCTTATAATGTTGCAATGTCCACTCTTGCTTTATTAATTGGTTTCCTCTCTCATCTATGTCCATGTTGATTCATACTCGTGAAGATTTGACATCCCTTATTGTTTTATATATATACATCTATACCTCATGATCAGAATCGACTGTCTACTAGTTCATTCATTAGGATTTTAAAAATGTTGTATTTTGATCAATTTCACTGAGTGTCATCTTTGCTTGATTCAATTAACCAACAACATACATAGTGTAGTCACAAAGTGAGGTATGGGGAGGGTAAAGTATTCGCAGTCCTTACCCTCACTTTGGAGGTAGAGCGACTTCCCAATTAACCATGCATGAAAACGTCTGTTGAGTTATTTTCCCGAATATAGTTTTGGAATGGCAACGAGAGAAAGGGGTACAACAAGTTAATCTTTTCCTAAGAATCAAGAATCTGGCAGAAGCCTTTAACATTTAGTTGCTTAATGTCATAGGTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAAATTTTTGTGCTCTAGGTTGTGCTTTTGACTATGAGATTTTGATGTTTGTTTGCCTACAAAATGGCTATAATGAAGTGCAATTTATGGCTTTGAAGTTTAAAGAT</genome_strand>
        <mrna_strand>AAAAGCCATGGCTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAAATTTTTGTGCTCTAGGTTGTGCTTTTGACTATGAGATTTTGATGTTTGTTTGCCTACAAAATGGCTATAATGAAGTGCAATTTATGGCTTTGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316198" ref_strand="+" ref_description="SGN-U316198        Tomato 200607 #1 [19 ESTs aligned] arabidopsis/peptide: | Symbol: None | strictosidine synthase family protein, similar to strictosidine synthase (Rauvolfia serpentina)(SP:P15324) | chr1:2682130-2684103 REVERSE | Aliases: T27G7.16, T27G7_16(evalue: 1e-169, score=593) genbank/nr: gi|18390900|ref|NP_563818.1| strictosidine synthase-related [Arabidopsis thaliana] gi|16930481|gb|AAL31926.1| At1g08470/T27G7_9 [Arabidopsis thaliana] gi|17381182|gb|AAL36403.1| unknown protein [Arabidopsis thaliana] gi|21436203|gb|AAM51389.1| unknown protein [Arabidopsis thaliana](evalue: 1e-167, score=593)">
      <seq>accactctattatttttttcaagaaaatttttcattgtaccttgttagatagccaacattctttcacaattcttccttttggggtatactataattccaaaattttcaaccccatttcatgattttccctttactcaaaccccattatcataaagtttcaatttttatcaagaaaatgagagcagtttcagtatttggtggtgtgttccttgtgttggcagtgtattgtgggttggacccttttaagcatagtgcaatttctgagttcccaaattttgagtcttttaaggttgagatgccagcttggtctgaaatcccagttgaaaaagattcacaaaatttgcttcaaaaatctgaagttaagttcttggatcaaattcaggggccagaaagtattgtttttgatcctcagggtagaggaccttatacagggatagctgatggaagagttgtgttttgggatggtgaaaaatggaatgattttgcttatacttcagctaataggtcaggcttgtgtgatccaaaaccgtcagcgttgagctataggaagtacgagcacatctgtggtaggcctttggggttacgatttgacaaaagaacaggtgacttatatattgccgatgcatatttggggttaatgaaggtaggccctaaaggtggattagcagaatctttgacaactgaggctgagggggtacctataggatttgcaaatgacttggatgttgatgatgaagggaatgtttattttacggatagcagcacaaagtaccaacgcaggaattttatacagctggttttctcagcagaagatagtgggaaggttctcaaatacaatcctaggacgaaagaaaccactattcttattcgcaaccttcaatttccaaatggtctgtcactaagcaaggatggttccttctttatattttgcgaaggttccaagggcaggttacgaaagtactggctgaaaggtgagaaagccggtacatcagaggtaatagcaatcctcccgggatatccagacaacgtacgagcaaatgaaagaaatgagttttgggtagcaatccactgtcgtcgtaccatctacagttacataaatggcatataccctcgactccgtcaattcttgctgaagcttcccatctctgcaaagctccaatacctcattcacattggtggcaggttcactgcagttgtcgtgaagtacagccccgagggcaagctgttgcagatattggaagatcgacaagggaaagtcgttagagctgtcagcgaggtagaggagagggatgggaagctttggatgggaagtgttctcatgtctttcatttcagtttatcagctagaatgaactcttgagcttttgctttggctttggctcatcatcaattacttctccattggaaaataactcattttacttcaaagagttgtttgtagtatttatttaaataaaggtttgatagtggcgtacacagaacttgtttgtaagctaagtcatcatttaaagaagtgtttgataattcagagatgaaaaaaaaaaaaaaaaatatatatcgctatcccatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="87352" stop="82338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87052" g_stop="86550" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86549" i_stop="85418" i_length="1132">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85417" g_stop="85142" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="780" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85141" i_stop="84068" i_length="1074">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84067" g_stop="83900" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="948" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83899" i_stop="83265" i_length="635">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83264" g_stop="82643" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="949" r_stop="1570" r_length="622" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1571" polyA_stop="1586"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U316198" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1569</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87052" e_stop="86550"/>
          <exon e_start="85417" e_stop="85142"/>
          <exon e_start="84067" e_stop="83900"/>
          <exon e_start="83264" e_stop="82643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTCTATTATTTTT-TCAAGAAAATTTTTCATTGTACCTTGTTAGATAGCCAACATTCTTTCACAATTCTTCCTTTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCATGATTTTCCCTTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAGGTGAGTTTTTGTTTTCCCCCTTTTCCTCTTTAGGTTATGGTTCTTGGTTCAAATTTCTTGTTTGTTGTGATTATGCCTATTTATTATGTTTTTGAGCAGTAGAAATAGGCTCTTGCAGAAATGTAGTGTAAGGCTGCGTACAATTGACCCTTGTGGTTTAGCGAACTCTGCAACATAGCGGGAGCTTTAGTGCACTGGACTTTCCTATTTGGTTGTGTTGTGTTCTCATTATAATGATCTTGTAAAAAAAAAAAGAGGTGTAGTCAAAGGTGGCTTAAGCCCTGAAGTGAGGCGCAAAACATGTTAAGCTCTTCACCTCACTTAGCGCGCGATGCAATGTTGTTATAATGCTACATGTTATTAAGGCATCTCTAATGTTTAAAATGTTATTATTCAAGATTGATGGGCTACTAGAACAGTTGGAAACACGTGCTAATCGTGGCAGCAATACTATGTTAGCTCTAATCATGCGGTTCAATTGCTAAAACCTGTCTGACCAGTGTAGAATTCAATCGTCATCTTCGGGAAATTGCATTACTAGTTAATGTTCTTACCTATTTCTACCTGATTAATTGACTTAAACAGTCGAATGTGGACCATGATGTCAGTGAGAACGGGGTTAAAGAAGGTACAAGATTGAAGCACATTTCAACAATTGTCTTTACTCTACTAAAATTCAGTATACTGCTTTAGGAAGAAAAGCGACACCGTCACATAAACGTGTTTCCTTCTTTATTGTTAAGCCTTTAGGACTGTTGTGGTCTTGTGGAGTATCATTATCAATAAGAATGTTAAAAGGTTGAAGATGATAACGTCCTGCTCGCAGTACTTATTTTGTTTTTCATTACTTTACTTGTGAACTTTGTTTCGTTATTACTTATAATTGGACGATATATTTCCATAATCTGAAATGTTTGTTATCATTTTTTATTAAATACTATTATTCATGTTGAAGCATAACGTTTCTGCTCCACGATCGAATCCTTTACGGCCCAAATTTCAACTTGCTTTGCATATTGTCAGAAATTTTATTTAATTGTGATGTATAAACTAGATTACATGTTTTTCAGACTGTTATCCCCCTAATTATGATTTAGATTTCAAGTCTATTTTCTGTTTTCTGAATTTTTAGGTCAGGCTTGTGTGATCCAAAACCGTCAGCGTTGAGCTATAGGAAGTACGAGCACATCTGTGGTAGGCCTTTGGGGTTACGATTTGACAAAAGAACAGGTGACTTATATATTGCCGATGCATATTTGGGGTTAATGAAGGTAGGCCCTGAAGGTGGATTAGCAGAATCTTTGACAACTGAGGCTGAGGGGGTACCTATAGGATTTGCAAATGACTTGGATGTTGATGATGAAGGGAATGTTTATTTTACGGATAGCAGCACAAAGTACCAACGCAGGTAGATTATGAATGTGCCATTTCTTTTAGTGCTCCAGATTTCTTAACACGTTGATTGGTATAAATTAAAGATTGCGATTCGATCATGATGTGATCTGGAAAATGAGTTTTGTTAAACTGGTGTACTTGTAGGTTATAGTTACATATCATAACTGGACCCTGAACAATTGCTTTCTATTAGCAGAGTGATTTGACTCTCCTGTCTAGTTCATGTCCTCGGTAAATTAAAGGTGCGTTGTCTTGTCTAACCACCTCTCCCAATTCTTCCACTGTCTACGTCTACTTCTCCTTAGGCCTATCATCACCATCCTTTCACACCTCCTCACCGGGGTGCCTGTGCTCCTCTTATTACTTGCTCGAAACCATCTAGCCTTGCTTCCCACATCTTGTCACCCCTAAGGCCATACCCACCTTGCCCATATATCCTCCTTCCTAATTTTGTCTCTCCTAGTATGCACACAGATCCACGTAAGCATCCTCATTTCCGCTACTTTCATTTGCTAGACGTGAGAGTTCTTGAATGGCGAACACTCAACCCCGTACAACATAGTTGGTCTAACAACCACTTCATAAAACTTACCTTTGAGTCTTGGTATTATGTTCTTCGTAGTGCCAAAAAAGGGACGACAAAAGAAATACTTCTTATCAAAATCAACAAAACCTTAATCCTAAACTATTTAGGTTGAGTATATGGATTTTCTACAAAGACAGATGTATATATTCTGCTTTATTCGAGGTCATTTCCTTCCAATACTAGTAATCTTGTTTTTAAAGGGAAATTAGCAGTTTTATAAAGTTAAAGAGACTTAAAAAAAACAATTCTAATGTAAGCCTAAGAATGACTAAGCCTTAATCTCCACTAGTTGTAACATCTTTATGGATTCTTTGTTTATCATTATATATTATTCTTAGCTAAGTTTGCGTCAACACTTGGGGTTCATTTGGTATGATATCTGAATCGTCTTCATTTAGGCTCCAAGATTCTGTGTAATCTTTAAAGTCGATTGCAATTTTTACTAGATCATCTTCAATAGAGAATTTGTTGTGCTTCATTCTCACACTGCTTCCTTTTCAGGAATTTTATACAGCTGGTTTTCTCAGCAGAAGATAGTGGGAAGGTTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAGGTACCGTACTTGCCTTTTGCAATCAGGATGTTTATAGTATTATGATCCAATCATTTATCACTCTGCTTTGATATGCTTTTCCTTGAGTCGAGTGTCTATCAGAAACAACCTCTCTACCTCTCAACGTAGAGGTAAGGTGTGTGGTACGAAATTGTATTGATAATGCAAAAAGTGCCTACAATAACTTGAAATTCGACCCTGGTTTTATGCACTGTTACAATTGTCTATATATGTCCATGTGCATTACAATCTACACCAGAGATACAGACACAAATACTATGCACAGTATGGAACAATGATAGACGTAGAATCATTACGGAGTTTCAGCTTTTATAATACATGTTATGCGATATCTGTATTCATTTCTCCATTTTTTTTCTTAAAACATCTCCTTTATTCCTCACTGCTTTGAAATGCCTTCCCTTGAGCCCTGAGGGTCTATCGGAAACTACCTCTCTACCTACCAAGATAGGGGTAGGGTGTGCGTATACTTTACACTGGTTATGTTGTTGTTGTAAAGCATCTCCTTTTTGTCGAATTGCCTTAAAACCGTTAAAGTGCACATTCAGTTGGATAGTTCCTGTGATGTTATTGCTTACTAGTATTGATAAATGAAACATTTTGCTTTGTTATAGGTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAATGAAACACGATATATATATCGCTATAACATCA</genome_strand>
        <mrna_strand>ACCACTCTATTATTTTTTTCAAGAAAATTTTTCATTGTACCTTGTTAGATAGCCAACATTCTTTCACAATTCTTCCTTTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCATGATTTTCCCTTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGGCTTGTGTGATCCAAAACCGTCAGCGTTGAGCTATAGGAAGTACGAGCACATCTGTGGTAGGCCTTTGGGGTTACGATTTGACAAAAGAACAGGTGACTTATATATTGCCGATGCATATTTGGGGTTAATGAAGGTAGGCCCTAAAGGTGGATTAGCAGAATCTTTGACAACTGAGGCTGAGGGGGTACCTATAGGATTTGCAAATGACTTGGATGTTGATGATGAAGGGAATGTTTATTTTACGGATAGCAGCACAAAGTACCAACGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTATACAGCTGGTTTTCTCAGCAGAAGATAGTGGGAAGGTTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAAAAAAAAAAAAAATATATATCGCTATCCCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326570" ref_strand="+" ref_description="SGN-U326570        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | plant-specific transcription factor YABBY family protein, contains Pfam profile: PF04690 YABBY protein | chr2:11310668-11313857 REVERSE | Aliases: T9J22.25, T9J22_25(evalue: 4e-40, score=162) genbank/nr: gi|41745658|gb|AAS10179.1| YABBY2-like transcription factor YAB2 [Antirrhinum majus](evalue: 6e-46, score=187)">
      <seq>ggcgattggcggcaaatcggccgaattcccatggggatccgatgacaatccttttgcttcaatttgtatacaaacttaccttatattatatatgcatactatatatacatatgtatttcttcttcactcttcccctttgatccatgttctataggtcaataacctaaaaaaaaaaaacaattaattataaatataaaatgtcattcgatatgactttttcttcttcaccttcctcaaaacgcgtttgttacttgcaatgtaatttttgcaacaccattcttgcggttagtgttccatgcagcaacatgttaaccttagtgacagtaaaatgtgggcattgtgcaaatatgctttctgttaatattggatctttaattcaagctctaccccttcaaaatgttcaaaagctgcaaaggcaacagtacacaaatgttgaaaataattctagtaattataaagcttatggttcatcatcatcatcctcttcaaagttcaacaaatattcttccattgtttctcctcaaattgaacctaaaatcccttcaattcgtccaccaaaaaaaaaacaacgtgttccttctgcgtacaaccgattcatcaaggaaaagattcaaaggatcaaggccagtaatcctgatattagccatcgtgaagcttttagcactgctgccaaaaattgggcacattttccacatattcactttggactcaagctggagggcaacaaatagcgagggaaaaaaaactttaatatatgatatatacatatatatatatgcatgtcttttatgttgttttcgtcgaagatttatcaaaaataatgtttttattttttaaaaattactttttttttagattttatttataaaaatatgctgaatatgttattattattattgtcctcgtcttaatattattttcagagttgtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="98113" stop="90973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97809" g_stop="97575" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="284" r_length="238" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97574" i_stop="95663" i_length="1912">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95662" g_stop="95543" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="404" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95542" i_stop="94924" i_length="619">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94923" g_stop="94776" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="552" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94775" i_stop="93574" i_length="1202">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93573" g_stop="93525" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="601" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93524" i_stop="93271" i_length="254">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93270" g_stop="93195" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="677" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93194" i_stop="91529" i_length="1666">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91528" g_stop="91273" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="933" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="934" polyA_stop="947"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U326570" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97809" e_stop="97575"/>
          <exon e_start="95662" e_stop="95543"/>
          <exon e_start="94923" e_stop="94776"/>
          <exon e_start="93573" e_stop="93525"/>
          <exon e_start="93270" e_stop="93195"/>
          <exon e_start="91528" e_stop="91273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCTTTTGCTTCAATTTGTATACAAACTTACCTTATATTATATATGCATACTATATATACATATGTATTTCTTCTTCACTCTTCCCCTTTGATCCATGTTCTATAGGTCAATAACCT---AAAAAAAAACAATTAATTATAAATATAAAATGTCATTCGATATGACTTTTTCTTCTTCACCTTCCTCAGAACGCGTTTGTTACTTGCAATGTAATTTTTGCAACACCATTCTTGCGGTAAATATTTCTTCATCCTTCTTCAAACTTGTTTGAATTTTAATTACTTATTGTGCATATGATAATATAATTACTAGGGTTAAAAAAAAATATGCATGTTAGTCTAGGGCATAATTTGATTTTAAGCTCATGTGTGATGAGTATGATCATAGATTATTTATTATTAAAATTAAAAAAATATGTTTTTGATAGAAAATATATGTCTTTTGTTTTTTAGGTTTCAAGTGAAGTAAATATGGATGAAATTTTTGAAACATAATCTTATTTAGATGAAATATTCTTCTTTTATGAATTATAGAGTAAAAAGGATGTATTTGGTTGGATTTATAATCTTTCTTTGATATTTTATGTTAATTTTTACTAGATTTCACTTGGGACAAAAAAGGGTTTGTTGGTTTTTTTTTTAAAGAGTTTCATTTGTTTGGAAAATCTTGAAAAATTAACTTCAAATGAGTTTTATAAATAAAAAAAAAGAATTTTTATGATCTGAAGTATTTTCTTTATTCCAAAATTTCACAAATTATTGTACTACTAATTTTGGTGTAAATTAGATCTCTTACCTTCAAAATTGAAAAAAGAGAAAAAAAAATGGTGGGGTTTTCTGTTCACACATTTTAACACATTTGCCCACTGGATAATAAACTCAAAATAATAATAATAATAATAATAATATTTTTTCTTCTTTTTTCCCCAATTTTTGGGATATAACTAATTATGTTTAAGAGAAATAATCATGATTGGAATTTGAAACAATTAAGTATTGTTTTTTATTGAAAAAAATCATTTATAGAATTGTAGATCATTTAAATTAAAAGGAGAAAAATAATAATTCATATATAATATATAATATTTGTTATATATATTTTTTATTTATTTATAGAAGTTTATTAGATCCTTGTATTGGAATTGGACTCTGATTTCTGTTCTAGTCATGTCATTTTCCTTGTTATCTCTTTAAATTTATCACTTTTCTAGTGACTGAACAATGGTCAGAAAAAAAGTCAGGAGCACCAAAAGTAAAGGAATTAAAGAGATATGATTAGAGATACGATACTTTATCTTTAATCAGACGTCTCGAATAAAAAAAATTATGATAAAAACTAAGGTCATATGCATATAAATTCTGATTAATTGAGACTCTAAAGCTCAATTAAGGACTATAAATTCCCTTACCTTAGTTGTCCTTTGTGTCATGAATTTTGAAGTTAAAAGAGTTAAAATTTTAAATTTTAAAAATTGTGATTTTTTAAGTTGTATTTAGACATGTATTTTACTTTAAAATTTTTAAAGTTTTTTGAATGAAAATTTGAAATACTTCAGTTTTCGCTCACCTCAATTAATTCTACGAAATATCAAGGGTTTTCACATAGAAATAGTCACTACAACAAAAACAACTTTTAACGACAGTAAATATTGACATTAATAAAGAATGCTAAAATTTTTACCGACATTAGTTAAGTATCATTAGAACCAATATCACTAAATACTTTAACGACATATACGAAGAGTGCTAATTGATGCTAATGATCATTTTTGACGTAGTAATCGCTGATTACTACTAGTCAAACTAGAAAGAAGTCTATAGTTTAGTTATGTAAATTGTTACTACTTAATTTTTGTTATAGTGGTTACACAAATGGTAAATTATTATAGGATTGGATATATCTATAATATATATAAAATAATTATAAGTAATTTATATATTGACAAGCTATAATAGATAAATTTTTATAAATTTTATTCGAAAGAAATTAGACATGATAATTTTTCATCATATCCAGTTCGAACTCTCAAGACTATAATTAGTTATTCTTTTTTTTTTTCAAAAAGTTCCATAAAATCGAAAATTATTATATTTATATAATATTTCTCGATTTTAATCTGATGATATAAAAAATCTATATATTATCAGGTTAGTGTTCCATGCAGCAACATGTTAACCTTAGTGACAGTAAGATGTGGGCATTGTGCAAATATGCTTTCTGTTAATATTGGATCTTTAATTCAAGCTCTACCCCTTCAAGATGTTCAAGTAAGTAAATATATTAATTATTTTTCTCTATTTCATTTTATTTACGTATAAGACATATACAATCTTTTACGCACTATAATAAGTATTCATGAATCTTACGTAGGAACTTTTATTAGTGCTCAAACACGAAATACTTAGTTTTATGAATGTTTGCTTCAGATCGAATATAATCAAATATTGATATATTCAGATAATTTGAAAATAATCAATTCATCGCTTAAGCGAGACATTGATCAATTGCTATCCTTTCCTTTTCGATTTGTTCCAGTAAAACAACATGTAATTTCTACATTTTAAGGATAATTCGAGTTTAAACCTTTCAGTTTAACCCTAATATTTATAATTTTATAATTATATAATATTATGACATTTTTAAAATTATAATTTCTTTTAAAAAAAATTTATATACTTGTGTGTAATTCATAATCTCTATGGTCAAATGCTGTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTACCTTTTCCTAATTTTGTGGTAAAAAAAATTAAAAAAATATTTTTTTCCATTACTTTTTTTGTTGGTGGAGGAGAAGAAAGTGTTTTATACTAATTATTACTATGATAATAATAATATATATATTTTTTCTTTTTATCTGACAGAAGCTGCAAAGGCAACAGTACACAAATGTTGAAAATAATTCTAGTAATTATAAAGCTTATGGTTCATCATCATCATCCTCTTCAAAGTTCAACAGATATTCTTCCATTGTTTCTCCTCAAATTGAACCTAAAATCCCTTCGATTCGTCGTAAGTACTCTCTCTATCTCTCTTAATAAATCGCTACACATTAATTATATATAATCGTTCATAATAAGTAGAACGAGCAAATTATAACTTAATAAATAAGACAGTTGACCTACTATAACATATTTGAAATTTAAAGTTATAATATTAGTATATAAGTTAAATATTTTGTTGAATTGTTGTTTGCAACATGTCCTTTCAAAGTGTAATTAACTTAAAACAAGCTAGGTAAGTGTAACCGGCTACCAGGTCAATTTAAATCAAGTTAAGATGTTTAAATATATATTTTTTAAAGTTATATCGATATATCATATATCTTTAAGTTATATATACGTTTATCGATCGTAGCAGATAATCTGAGTTATTTATAAGACTATAATTTCGATATTATTTGGTTGATCTAATAATATAAAACAGCATGTACATTGTTGATGTACATAAGTATAGTGACTTAGAATCTTTATCAAGGTGATTCGAATAATGAAAATACGATATATAAGATTTGAATTTAAAGTATCAAATAGAGCTAATTTTTACTTTTATGTTCAGATAATTTAAACTCTTTATATATATAATATGATATTTTATTTAAAAAATAAATAAATGAACATGTGAATCCGTCTCGATTTGTAGTATGAAAAAGGAGGAGATATAATTGACAATAATATTTGGACTACATGAAGTTTCCTCTTCACTTTTATGACAACTGAAATTGATTGTGACATTACATTTGTATCCAACTCATCAATAACATTGTTAATTATTAGGGCCCTTTGGTTGGAGAACAATTTATATATTAAAATTAAATTTACACAGTTAATACTATAATATGTTTGGTGTGATAATTTAAGCACATTATTTGGTTATTATTTTTATAATTTTATTTAAATTAAAAATATATAAATTGTGAATTATAAAAAATAAAATAATTAATACATGCATTATTAATATCTTCATAATTTAAACGACGCACTTTAAATCAATAATCCATGTGGCATAATAGAAAACACTTCTAAATAACAATGAAGCTAGGGTTATGAAAAAATTCAATGGTTTTTGAGCAAAATCTTGTATTTATGTAATTATGTTAGTGAATCAACATAACAGGTACATAGATAAGTATCGAATACGTTACCTTTTCTAAAACTCAAAATTTATAAATTTAAAATTTTAACTCCGTCTCTTTCATATATCAAACTATGCAGCACCAGAGAAAAGACAACGTGTTCCTTCTGCGTACAACCGATTCATCAAGTAAGTTTTTTTTTCTTCCAGTAGATATTATGATGTTAATTTATTAATTCGCATTTAGAAATTTTAAATTTATGTATTTTTGAGATCAAATGTACTAAGTTCTACGTAATTCGAAAATCCGTCCATATTTAGTTACCCCTCTCTTGCCACCGAAAATTTGCAATATATTTATATTTACTGAGATCAAAAATATATATTTAAAATACCGATCGCATATTTTTTGCGCTATATTATTATGTTTCGAATGTGTATAGGGAAGAGATTCAAAGGATCAAGGCCAGTAATCCTGATATTAGCCATCGTGAAGCTTTTAGCACTGCTGCCAAAAATGTAAGTCCTCTCTTAATCAAAAATCTCGAGATTACACTGTGAAAATAATAAAAAAAAATATTGTTTTCGTTAGTATACCTAACACAATGAAAATGGAAACTAATATGGATACCTAGAAGGAGTTAAGCATGGGAAAAAGCGGGAGAGTCTTTTTAAGTTGATGACTTTTTGAATGATCGTGTGTTTAATTTACTTTTTTATGTCTTAAATCAGATTAAATTATGAAAATAAGAAAAAAGAATCTTTAGTAAAAAGCGTTTTTCTCGTTAGTAGACCTTACACAATGAAAATGAAAACTATGAATACCTACAAGGAGTTAAGCATGGGAAATAGCGGGAGTGTCTTTTTAAGTTGATGACTTTTTGAACGATTTTGCGTTTAATTTACTTTTTTTTATGTCTTGAATCTTTTAGGTAAAAATCTTACTTTGCATGTGATATAATACTAATTATATATCGTTTGAACTATAATTCTAGGCTTTCATATTTCAACTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGGTGTTGAATTGTCCAAATGTTTGTCGATAAACGTGCGTCTATTTTTAACCATTTATTCATCAAAATAATAATTTTAAACGTATTTTTAATCGTTAATTCAGACAAATAATAAAACAACAAAAGAAATGAAAATAACTTGAACTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTAGTGTTGAGTTGTCCAAATGTTTGTCGATAAATGTGCGTCTATTTTTGGCCATTTGTTGATCAAAATAATAATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAATAAAACAATAAAAGAAATGAAAATAACTTGAATTATATATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGATGTTGTAATATATACTTCTGATATTGAATTGTCCAAATGTTTGTTGATAAACATGCGTCTATTTTTGGCCATTTTTATTCATCAAAATAATAATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAATAAAATAATAAAAGAAATGAAAATAACTTGAACTATATATTATTTCTATAATTTATCTAAATTAATATTTTCTTTGTATTAAAATATATTTTTGATGTTGAGTTGTCCAAATGTTTGTCGATAAACGTGAGTCTACTTTTGGCCATTTATTCATCGAAATAATAATTTTAAACGTATTTTTAATCGTTAATTCAAACAAATAATAAAACAATAAAAGAAAAGAAAATTACTTGCACTATACATTATTTCTATAATTTATCTAAATTATTATTTTCTTTGTATTAATATATACTTTTGATGTTGAGTTGTTTAAATATTTATCAATAGACGTGCGTTTATTTTTGGCCATTTATTCATGATTTTAGACGTATTTTTAATCGTTAATTCAGACAAATAACAAAACAATAAAAGAAATGAAAATAACTTGTTGCATGTGGAATTTTTTGAATGTTCACAAAAGAAAAATTATGGTAGGGACAAACAAGAATGACCACTAAAATAGAAGAAATTAAAAAAGAGAAAAATATATTTTTCAAGATTTTATCTTTTATTTTAATTTTTTGCTATTTTTGCAGTGGGCACATTTTCCACATATTCACTTTGGACTCAAGCTGGAGGGCAACAAATAGCGAGGGAAAAAAAACTTTAATATATGATATATACATATATATATATGCATGTCTTTTATGTTGTTTTCGTCGAAGATTTATCAAAAATAATGTTTTTATTTTTTAAAAATTACTTTTTTTTTAGATTTTATTTATAAAAATATGCTGAATATGTTATTATTATTATTGTCCTCGTCTTAATATTATTTTCAGAGTTGTGAAA</genome_strand>
        <mrna_strand>AATCCTTTTGCTTCAATTTGTATACAAACTTACCTTATATTATATATGCATACTATATATACATATGTATTTCTTCTTCACTCTTCCCCTTTGATCCATGTTCTATAGGTCAATAACCTAAAAAAAAAAAACAATTAATTATAAATATAAAATGTCATTCGATATGACTTTTTCTTCTTCACCTTCCTCAAAACGCGTTTGTTACTTGCAATGTAATTTTTGCAACACCATTCTTGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTGTTCCATGCAGCAACATGTTAACCTTAGTGACAGTAAAATGTGGGCATTGTGCAAATATGCTTTCTGTTAATATTGGATCTTTAATTCAAGCTCTACCCCTTCAAAATGTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGCAAAGGCAACAGTACACAAATGTTGAAAATAATTCTAGTAATTATAAAGCTTATGGTTCATCATCATCATCCTCTTCAAAGTTCAACAAATATTCTTCCATTGTTTCTCCTCAAATTGAACCTAAAATCCCTTCAATTCGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAAAAAAAAACAACGTGTTCCTTCTGCGTACAACCGATTCATCAA..............................................................................................................................................................................................................................................................GGAAAAGATTCAAAGGATCAAGGCCAGTAATCCTGATATTAGCCATCGTGAAGCTTTTAGCACTGCTGCCAAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCACATTTTCCACATATTCACTTTGGACTCAAGCTGGAGGGCAACAAATAGCGAGGGAAAAAAAACTTTAATATATGATATATACATATATATATATGCATGTCTTTTATGTTGTTTTCGTCGAAGATTTATCAAAAATAATGTTTTTATTTTTTAAAAATTACTTTTTTTTTAGATTTTATTTATAAAAATATGCTGAATATGTTATTATTATTATTGTCCTCGTCTTAATATTATTTTCAGAGTTGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340936" ref_strand="+" ref_description="SGN-U340936        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, INTERPRO:IPR000719 | chr5:7301338-7303421 FORWARD | Aliases: None(evalue: 5e-48, score=187) genbank/nr: gi|30688291|ref|NP_680192.2| protein kinase family [Arabidopsis thaliana](evalue: 4e-46, score=187)">
      <seq>ttaatagtagagccaaaaaaagtttcaatttacttgagataaagaaagcatatattcgattattaaagtcagaagcaacaatgggtcatcatcatcatcagttaaccgacccacttgtcactctttgtactagttgtaaaagtttcttctttttcttgtctttttcttgcagaatttgtcaatggaacctttgatcttcaaaattaggcttcttattcttgcttgggtgcatttcagatctcattcaggtccaatatccttggtgaaacacttctctaataaagatataaagaaagcaactgatggttttaggagaattgtttacaactcttccaaaatagttgcttacagagcaaagtttcaaaatggccatgctgcgtttgtgaaagaagtccgaggtttcgaagatgaggatgatacggccttctacagggaggtacagttactcggtcgcttgcatcatcgacatattgctgcacttaatgggttctcttgcggccctaagaggttcctagtctttgaaaatatggaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="101387" stop="105874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101687" g_stop="101934" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101935" i_stop="103704" i_length="1770">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103705" g_stop="103963" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="507" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103964" i_stop="105545" i_length="1582">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105546" g_stop="105574" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="536" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U340936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101687" e_stop="101934"/>
          <exon e_start="103705" e_stop="103963"/>
          <exon e_start="105546" e_stop="105574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAGGTAAACCCCATCTGCCTCAAATCATGTGAAATTGTATTTGTTGAATGTGTTGTGGGTAGTTTTTGAATGGAAGATTTTGTGTAATTTGTGGGGTGAGGGGGTGGAGTTTTTAGTTATCCTGAAGTTGAAATTTGAATTGGGTTGTAGTAAAGTTGTAATCTTTAGTGAATTTGATAGTGATCTTGGTTTGTCTTTTTATGCTGACTTAAGGTGTGTCAGCAGCAGAATTGGTTTTTTCTTTTTTTTTGACTGTATATGGGATTACTGTTATGTAGTGATGGTTAATTGATTAAAGACAGACTATTTACCCCACTAAGGTAGCAGTAAGGTCTGTGTATAGATTATAGAGTACATCTTATCCTAGACTTCATTTGTGGAATTAAAATGGATATGTTGGTGGTGGTGGTGGTGATGGCTAATTGCTTGAGAATGGGTGAAAGAAGTAAAATTTGTAAGGAACCTGAAGTTGAAGTTGATGGGAATTGAAGAAAAATGTAACTGACGAGGTTCTTGGATCGCAGGTATTTGTGTGGTAGTTTCTTGAAATCTGTTGTTGGAGGCTAGAGATTTTAATTACCCTGAAGTTGAAATTTGCAGTAAAGTTGTAAGTTTGTGAATTGGTAATGATCTTGACTTGCCTGTTTTATGCTGACTAGATGTGTGTGAGCAACAAATTAGTTTCTTCTTTCTGTTCACTGTATTTTGGATTATTTTTATGTAGTGATGATTAATTGCTTGAGAATGGGTGGACGAAGTACAATTTATAATGACCCTGAAGTTGATTTTGATGTTGTTACTTATGAGGTTCTTGGGTCGCAGTCTCGCAGATTGTGCTTATTTTTGTGGTAGTTTCTTAAGGGGTGAGGCTTTTAAGTATCCTGAAGTTAAAATTTGAGGCGGGTTGCAGTAAAGTTGTAATTTTGTGAATTGATAGTGAACTTGACTTGTTGTTTTTGCTGACTAGATATGTGTCGGCAGCTGTATTAGTTTCTTCTTTCTTTAACTGTATTTTGGATTAGTGTTATGCAGTAATGGTGACCCTGAAGTTGAAGTTGATGTGAACCAAAGAAAATTGTACTATTTTTGTGAATTATAAAGTTTTGTCCTTGTCTTTTTGTGCTGATTGGAGAAGGGTGAGTAACATTGTCAGTGAGTTTTACTTTTAGTTTCTTTTTTACAACACTGACATTGCCAATTGGTGATGGAAAAAAAAAGGAAGGGAAAACAAGTAAAACAAAAATAAAATACAAGAACACCGTAAATATGATAGTGTAAGGACTCGGTTATCATCTAGTAGTTTCTGGTGCTTGAAAATAGTTCCTTATATAATAGATTACATGACTGAAAATGACTTGGTGAAGCAATTCTCTCGGTCATATGCTTACAGTTGTTTTACCCTAGTTCACTTGTTGTTCCTTGGAACGGTTGAGATGGAAACTATGGCAATTAGCAGACATTGTGTGCTAGGTGATTCAAAATAGAATTTGTAAAGCAGGGTTGTCAATCGCTGGAAACGTCATTATAAGCTGTGGCTTGTTGATGGAACTATGTCCTGTCTTCAAGTCTATTAGTTTTAGGCTGGCATTGTTACACAACTTCCTCTAATGTAGCAAGCAGGCTCACTCTTAGAAGGTTTACTTGACTGTTTGGACTGAGATATTCATTTTTAACTAATATAAGAAAGTCTAAGCCTTGAAGGTTTACTGCTAGACACAGACTTTGCCTTGAAAATCATGGGATATTTTGTTTTTGAACGTAAATCAATTTCAGGTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAGGTTAATTTCCTAAGCTTTGGCTTGATGAAGTTTGTGATTTGTAGAAATGGTTCTGTCTCGTTGATTAAAAATCTATCTTTGAGATAAGAATGAGAAAAAATATTGGTTGATTATTTCTTGATCATATTATGATTATAATATAATACTAGTGCTATTGTATATTGTATTACCAATTTATACATTTTGATGCTATCAGAAAAAGTCATAAATATCCGTCATAATTTCTGATCACCAGCAATCTGACCTCTGATCTTTGATATTTTTTGTCACCATTTTTCTTTCGCAACCAAAAGACGTGCAAAATGCAACTTACTACTGGGAATCGCGGGTTCCTTGGTCTAGGAGGTAGGTTTGTAGGTGAGGCATTGTGTCGTCAAGCAGAAAGAAATTCACTCTTCCATTTCTTAGTAGGAATGCTCCTATGTTAGCAGGACATTTCGTGCAAGAACAAGGTTTGAGTTAGTGCACTAGCTAGGCTGTGTTTCTAGCCTAATGGCTCTGTCTTTGAGGTAACCCGGACTAGTACCAACTTAATCTAGTAAATAGGATGTTGAAAAGGCCGGTGGGTCTTCAGGCTGCTTTTTTAATTAATAGTTTCAATCAAAATTCCATCGATTGTAGCTAGTGATTGCCCGGGTTGGTGTGTGATCACCAAAGGTGAATTAACCCTTCAGATGCTCTCTCTGCCAATGCCTAATACCCCCTCCGGTTCCGCCGAGTCACAATTGTAAATTGTTCATAGATCGCTCAATCAGGCTAAATATCTTAAGCAAATGCTTAATTAGCTCTCAATCCTGGCAAAAATATTGACTTCCAAGAATATTTAGATTCTAGCTCTAGTGATATACTGAAAATTAGGGAATCCCCATTTTCATTTCCATGCAGTGTTCTATTGAAATGTTTCAGTTTTTTATTGGTTTGTACTTCCTTTTCTTCAGTTCCAATAGATCTCCATTCCTTCCTTTTCCCTTTGTATAATCACATCACATATGCAGTACAAATAGCTATGGGGGCAAACCCATTATCTTGTGTGTTAGGCTTTCATTGGGTTATGTCTCATCAGCTACTATTTTCTTATTTCGTCTCATTTTTAATAGATAATCAGACAATGCAAATGCATTTTAGCTGCCCAAACTTGTCCCTTAGTCACTCTTTTCCAAGGTGTGGTCAGAAATGTGACATTTCTAGGTGGTTCAATCCGAGAACATTGCTAGAGCAAGAGATACTCTAATTGTGGCACTGAGTTCATGGAGATTTTTCCTGTGAAAAAGAAAGCATTTTGAAGAGACCTATTTAAATGTGAAATTAAATGAAATTCAACATTTCGTTCCTCGTAATACAACATAAGGTCATCAATTTCTCCTGTTACCGCAAATGAAACTAATCAACCTACACAATGGTTTACCACAGTTTTATTAGAAAAAGTATCGCATAGCTTTATCTGCTTAATTGCAGTGGATATCCTTTTGCTTCCAGTTCCTATACATTCTGGGTGTGTATGCTCCTTTTCTTTGGTTGCATTTCCCTTTTGTTCTTTTGGCTTCTTTCTCCATTCTCTGATAGCATATCTTGTCCACTATAGGTTCCTAGTCTTTGAAAATATGGAAAAAG</genome_strand>
        <mrna_strand>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTAGTCTTTGAAAATATGGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332249" ref_strand="+" ref_description="SGN-U332249        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains protein kinase domain, INTERPRO:IPR000719 | chr5:7301338-7303421 FORWARD | Aliases: None(evalue: 4e-43, score=171) genbank/nr: gi|30688291|ref|NP_680192.2| protein kinase family [Arabidopsis thaliana](evalue: 3e-41, score=171)">
      <seq>aacacctttctgaccctctgatgactccactaaactggagaataagactgcagatagcagttggcatcgctgctgctttagaatatctccacttcttttgtgatccgccgatgtaccacgtttcagtcagttcaagtaccatcatgctggacgagaacttcacagctaaactctgtgatgttagcctcctttgttctgtcgagaacaacaatccacttccgaagtctaaatgctccaaagaatgtggtaatgagatctgcaaacagacaatcttccagcttggtttgctgatcctcgagttagtcaccggtcaatcctcagaagaaggaggtgttgacttagttcaatgggttcaagattctcgcttccgaagaagatccattcaccagatgattgatcctgatctcggagacagctacgatttcaaagagcttaaaggtcttttggcagttgcaaaaatgtgtgtacaatctatccataagcctacaataaagacccctcaaatattgtggtatctccaaaagaaactgggcaggactccagtagtttgctgatgacttgagtcatgtcatgttcacagatatagatcatagattgtgtgagtagacattttttttgtaaagctatgttactcggactcttcaaatcgaagagtccacacaacttagtctgtaagtagtctgctgcgttttgacattgattatgaaattagacctcttcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="105390" stop="107170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105587" g_stop="105598" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105599" i_stop="105696" i_length="98">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105697" g_stop="105764" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="80" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105765" i_stop="106012" i_length="248">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106013" g_stop="106102" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="170" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106103" i_stop="106224" i_length="122">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106225" g_stop="106294" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="240" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106295" i_stop="106378" i_length="84">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106379" g_stop="106870" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="732" r_length="492" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U332249" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105587" e_stop="105598"/>
          <exon e_start="105697" e_stop="105764"/>
          <exon e_start="106013" e_stop="106102"/>
          <exon e_start="106225" e_stop="106294"/>
          <exon e_start="106379" e_stop="106870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCTTTCTGGTAAGTTTAAGCACAAGCCTTCTTTCTTCTTTTTTTTTCTCCGTCTACTTCGCGTTGAATTTGATGTATGTGTTTCTATCTATGTTTGGTTCTTGCAGACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTAGTATGTTCCTCAAGCTGCTTAGTACTATGTAGTCATATCTTGATCATTTCCAATACAAGCTTTTTATATTTTTCATTTTCCACATTGAAGATATAGTTACTGATAGATTAACTCAAATAGCAAACCCCTCAGAACAGCCTCGATATTACTAAATACAGACTCTGAATTTATTTAGTGTGTCGGCTCTTCTAAGAACTGATTATCACCTAACTGTTGGATTACTGATTGTTGTTTATATCTTGATTTAGGAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAAGTGAGCCTCGCAATCTTGAGCACCTCTCTATAGTAAATTGCTTCATCATCATATTTCATGCACATTTTTTGGACCTGCTTCATCTTTTGTTAAAATAATGACCATATGGTTCCTTGTTCCAGCTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAGGTACAAGGCTTCCTCCTTATTATCATCACCTCAAATCATACAAGTTTTGACCTATGTTCAGATTTTGCATTGCTTATCTTGCAGAATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATTATGAAATTAGACCTCTTCATAAAAACAAGA</genome_strand>
        <mrna_strand>AACACCTTTCTG..................................................................................................ACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTA........................................................................................................................................................................................................................................................GAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAA..........................................................................................................................CTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAG....................................................................................AATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATTATGAAATTAGACCTCTTCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316462" ref_strand="+" ref_description="SGN-U316462        Tomato 200607 #1 [25 ESTs aligned] arabidopsis/peptide: AT3G44110.1 | Symbol: None | DNAJ heat shock protein, putative (J3), identical to AtJ3 (Arabidopsis thaliana) GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region | chr3:15879781-15882208 REVERSE | Aliases: F26G5.60 (evalue: 1e-150, score=530) genbank/nr: gi|10798648|emb|CAC12824.1| putative DNAJ protein [Nicotiana tabacum](evalue: 2e-155, score=552)">
      <seq>aatcggccgaattctagagcattctccactcttttcaatttctcatttcacctgagccttcaaagatgtgtatatatacaccccttttgagtccttgttggagtcaagtatttgggtgttctgttcttttcatactgttcttgaaaagaagttgaaattgaaaaggatgtttggaagaggagggaaaaaaaagagtgataacacaaagttttatgaaatcttgggtgtttccaagaatgcttcagaagatgaaatcaagaaagcttatagaaaagctgctatgaagaatcaccctgataagggtggtgatcctgaaaagtttaaggagctagctcaagcttatgaggtcttgagtgactcacagaagcgtgagatttatgatcagtatggagaagaagcactgaaagaaggaatgggtggtggtggtggcacacatgatccatttgacctctttaattccttctttagtggaagtccttttggaggtggtggtcgtagaggacaaagagagaggaggggtgacgatgtagtgcatccattgaaggtgtcgcttgaggacctatacaatgggatgaccaagaaactatcgctttcgcgcaatgttatttgctcgaagtgtagtggcaaggggtcgaagtctggtgaatcaatgaagtgttctggttgtgaaggtactggtatgaaggtttcaatcagacagcttgggcctggaatgatccagcaaatgcagcagccttgtaataaatgcaagggtactggagagacaattgacgataaggatcgttgtcctcaatgcaaaggtaaaaaagtggtaccagagaagaaagtcattgaagtccatgttgaaaaaggaatgcaaaatggacagaaaattacattccctggcgaggctgatgaagcgcctgatacagttactggagatgtggtttttgttctccaacagaaagatcacccgaagttcaagaggaagggtgatgacctgtttgttgatcacacattgaccttaactgaggcactgtgtggtttccagttcatattgggacacttggatggcagacggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattattttcttggggaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaancccggggggggggccgggaacccatttcccccaaaaggggagcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="110750" stop="106843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110458" g_stop="110140" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110139" i_stop="109194" i_length="946">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109193" g_stop="109028" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="485" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109027" i_stop="108700" i_length="328">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108699" g_stop="108561" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="624" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108560" i_stop="108366" i_length="195">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108365" g_stop="108089" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="901" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108088" i_stop="107921" i_length="168">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107920" g_stop="107722" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="902" r_stop="1100" r_length="199" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107607" g_stop="107144" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1101" r_stop="1564" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U316462" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1564</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110458" e_stop="110140"/>
          <exon e_start="109193" e_stop="109028"/>
          <exon e_start="108699" e_stop="108561"/>
          <exon e_start="108365" e_stop="108089"/>
          <exon e_start="107920" e_stop="107722"/>
          <exon e_start="107607" e_stop="107144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGAGAATTCTAGAGCATTCTCCACTATTCTCAATTTCTCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAGGTAATCTTTTTGTTTATTTTTGAAGAAAGGTGAAGTCTTTGTTCTAATTTGGGAGTTTTTTTTTTTTGTTATCGTGTTATGTTTGTTTAAGCTGAAGAGTTGCCAAAGGCTGAGTTTTTGGCTGTGTAAATGTTTTAGTTGAGGTACATTTTAAATTCTGTACCATCTCCTGCTGCCTGCTATATCCTTGTTTCATCCATTGTTTCTTGAAGAATGGCAGTTCTTAGTTTCAATTTGGGAGAAATATACTGGGGGAAGGGGAAGAGGGATCATAAGGTGGGGAATCAAGCTCTCACATTCAGTTTGCCAGCCAAGGAGGTTCTTATGAAGAGGAATTATGGGGAATCAAGTTCTCACTGATAGCCTGAAAATTCAGTTAGCCAGCCAATGGTGGTCCTAAGATTTCGTTTTTTGGGGAGGGGGAGGAAGAATGCTTGTTGAGCTGGTTTATCTCTTTTATGTGTTGGGGTGGTGCCTTTTTTATTGCTATGCTGTTTTGTTTGCTCATCAAGGTGGTGTTTTTAGGCTGTGCAAGTGTTTTAGTTGAGTTGCTTCTTAGAGTTCCATGTATCTGTTGGTTTTGTATTGTAAAGCTGCTTAGATGAACCTGAATACTGGTTTTGTTAAGTAAAGCTGCTTAGATGAACCTCCTGAATACCTGACAAGGGTGGTGATCCTGAAGGATAGCCTTTTTTTCTTTTCATCATCTCCTATTGTTATTTTCCTTTTCCTTTTTGTGTGTTGGTGGTGCTATTTTTTTGTTATGTTTGTTTGATGTAATCTTAAGTTGCTCCCTCCTCATGATGGTGGTTGTGTTTGGAGTTGTTGTCTTCTTGGCTGATAAGCCAGTGAGAAGCTACACTTTTTTGAATGGTCCCTGTTGTTGATTAATCCTCTTTGGGTGGTGTTATTATGCTAATCTGACAACAGTTGTTCTCTTGTGCAGTTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAGGTTAGATCTAATGAACAAAGCTTTCGTGATGCTTGTTATGTGTTACTTCCTCCATTTCAATTTATTTTTCCCGTTTTGATTTTGATTTGATACGGATATTTGAAGGCAGAATTAAAGAGTTGTCCAAAAACAGGGCAATGTGTGTGTTTTTAGTGGACTGAAAAGGGAAGTACCGCAAACAAATTGAAATGGAGGAAGTATCGAGTTTTCTTTCTGGTCATTTTCGTCTTTGAAGTTGAATAAGACCAGCTTGTCTTTTTTGGGATGGTGGTGCGGTAATTGTTATTGTTGTTTGAAACTGAATAACATGAGTGTGTTTACTGAGCAGGTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGGGTCAGTATCTCTCTGATATCCGCATTACTTGATTTCCTGGTAGTGTTTGTAGCCCTATCGTACTTGGCATATAAATGGTTAAACGTAATAGTCTGGAGATGAAAGGATCTCCTGATATAGAGAAGTGAGATTTCAATGCAAGTGCTCAAATGTTCTCTTACGTTGTATTGTATTGGTTTGTTTCTGTAACTGCAGCAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCGGTAAGCTAATCTTGTCATCTCCCACGTGTTAGTACATTAATGTTGATGATATAGACTTAGGTGGTTGCTGACCTGGTTTAGCTAATCTTGTCATCTCAGACATGTTAGTACATTAGCATTAACGATATAGCCTCGGGTGGTTGCTGACCTGGTTTAATATTGTTGCAGCCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>AATCGGCCGAATTCTAGAGCATTCTCCACTCTTTTCAATTTCTCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG........................................................................................................................................................................................................................................................................................................................................GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG...................................................................................................................................................................................................CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG........................................................................................................................................................................CCTGATACAGTTACTGGAGATGTGGTTTTTGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGGACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316461" ref_strand="+" ref_description="SGN-U316461        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT3G44110.1 | Symbol: None | DNAJ heat shock protein, putative (J3), identical to AtJ3 (Arabidopsis thaliana) GI:2641638, strong similarity to several plant DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central domain (4 repeats), PF01556 DnaJ C terminal region | chr3:15879781-15882208 REVERSE | Aliases: F26G5.60 (evalue: 5e-59, score=223) genbank/nr: gi|10798648|emb|CAC12824.1| putative DNAJ protein [Nicotiana tabacum](evalue: 3e-62, score=240)">
      <seq>tcaagaggaagggtgaggacctgtttgttgatcacacattgcccttaaatgaggcactgtgtggtttccagttcatattggcacacttggatggcagacggctcctcgtaaagtcaaaccctggagaagttgttaaacctgatcaattcaaggctatcaatgatgaaggaatgccagtttaccagaggccattcatgaagggtaaactgtacattcatttcatcgtggaattcccggattcgttgagcctgccacaggtgcagcttctggaggcaatgttaccatcaaggcctacatcacagtactctgacatggaactggatgaatgtgaggagaccacattgcatgatgtgaatatggaggaagaaatgagaaggaaacaagctgcacaacaagaagcatatgatgaggatgaagagatgtctggtggtggaggacagagagtacagtgtgctcaacagtagatgtagaaagatttaccagtttgaactttgcttatagtttagtttggtttactgttttctgttgttttggaaatgacatgttttgggaagtcaaaaaactgatgctttagtgaaatagaaatattatttttttggggaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="-" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="108162" stop="106843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107862" g_stop="107722" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107607" g_stop="107144" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="605" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="628"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="-" ref_id="SGN-U316461" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107862" e_stop="107722"/>
          <exon e_start="107607" e_stop="107144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTGGTTAGTAACATCTTCATACTTACCCCTGTGTGTGTGTGTACAATGAGTCGATGATCAAGTTCAAATCCTGATTCGAAATAATCTTGATTCAACTTTTCGTTCCAACTACTGCAGATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</genome_strand>
        <mrna_strand>TCAAGAGGAAGGGTGAGGACCTGTTTGTTGATCACACATTGCCCTTAAATGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG..................................................................................................................ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTTTTGGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324122" ref_strand="+" ref_description="SGN-U324122        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-binding family protein, contains Pfam profile PF00612: IQ calmodulin-binding motif | chr3:7831668-7833519 REVERSE | Aliases: MKA23.10(evalue: 5e-53, score=205) genbank/nr: IQ(evalue: 1e-59, score=233)">
      <seq>cttgaacaacaattagaacatgacgctcgtgtacgagagatcgaagagggctggtgtgacagtgttggatctgttgagcaaattcaagaaaagttgctaaagagacaagaggcagctgctaagcgtgaaagagcaatggcctatgctttagctcaccagtggcaggcaggatccaggcagcaggctacactttctgggtttgaaccagataaaagcagctggggttggaactggttagagagatggatggcagtacgcccatgggaaaatcgttttctagaccttaatgtcagagatggagtcatgcctaatgaaaatgaatcagccgaacctgtaaacgggatgaagaaccaggtaaaagttgctgggaagaaaccagcaactacaaaaccagcaactacaactctttcaaatgatagagtgggtccatctcattcaagcagtaactcaaaatcaaatgaaaaggcagcagcatcgctctctgatggttgcagttcttccccaaatgtgtcagcaagcacacaagaaacacctgcagcattagttaacaaacctaagtccaaaccaaatcgtgaagatttagttgaggaagctagttcaaaacccgtccttggttctagatcacacagcaatcctaaggagagatctactccctctgataaacaaggaaaacagagattgtctctgcctggtagcggtcttgcacctcaaacagcgagacaaccaagcagaaccatcaaaaggacatctagtacgcagaagcctttgaaggagaagtccaaattaaacgaaactgatactaagtctacagcaactgtttcacaacaggctgctgattagtttttaggtactcgttgaagatcccgatctcagaaccaagtgtcacccttgcttgtaaatacagggaaccttcttaaaggggagtgatggtatgttgtccacggcagagttaaaaggagataggcttgctgccatctcctgaataacatcttcgcatttgtttcaattcttgtcataattcgtgtaatttatataatagcgcgttgttttctttacccctcctccctcccagtgtaaaaaagaggatgaatttgctttttgtgccacttttcttgagctgaaaactggggaatttggtgagtttgattgccaatttctttgttgtgtgttgtacaagatctgaatgtaggattcattcattaatctagagattgtagaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="118812" stop="122942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119111" g_stop="119155" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119156" i_stop="119738" i_length="583">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119739" g_stop="119852" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="159" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119853" i_stop="121037" i_length="1185">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121038" g_stop="121560" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="697" r_length="538" r_score="0.943"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121561" i_stop="122116" i_length="556">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122117" g_stop="122648" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="1229" r_length="532" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U324122" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>1214</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119111" e_stop="119155"/>
          <exon e_start="119739" e_stop="119852"/>
          <exon e_start="121038" e_stop="121560"/>
          <exon e_start="122117" e_stop="122648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAACAACAATTAGAACATGACGCTCGTGTACGAGAGATCGAAGTAAGCAACTTCTAAATTGTTATTACTTAAAATACCCTTGTGATTATTTCCATAGTGGCCATTACTTGTGTCAATGGCATTTATTACTAGGTTATTATATTACTAAGTTTTAATCTTACCTTTTTCGAATGAGAGGTCTCTTGATAGTGGCATCAGCTGTAAATTTGCATTTGGTTTCTGAATTATTTGCCACAGGTTTTGCTTATGGTGGATATCGTTCAACAATATATGATATGCACTGCATCATGTGAAACTTTCCTGATAGGTTCTTCATGGATGTCCCAGAAGGACTGATCGGCATCTCATCATTTGAATGTTGTGGCCAAGAAATTAGGTTATATTGTGGTTCTTGGTTGTTCTTGTCATCAGTCTCATAATATGCTTGATTTTTCCACTTTAAAGGGTGATTCAAGTTGTAGTCTTAGTAATTTTCTATTTCTCTTTTGACATGAACTTTCGTGCCAAAATGTGAAAAAAAGTTTCAAGCGTAGAAGTATGCATTGCCTGGTGGAACTTATGTGGGTACACCCACACTGTTAACATTAACATGTGTCTCACCTTTTGTTGCTGAATATTCTAACAGGAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAGGTAAGCATCTCATCATCCTTCTTGATGATGTTTTTTCTGTTTCCATTACTGTATCAGTTTTTGAACTGATATCTTGAAGGCAAAACTTCAGATTAGATAGATATAATTGAGAACCTGTAAGAGAAGCAGCTGCCTATGTAATCTTTGTATCGATATTTTGAAATATGATCTGTGTAACTGCTTCTAAGTTCAAGAATATGACCAAAAAGTGTTTTTAACTAATAGGTCATATACATGCATCAATGGTATAAGTACTAGTATAACAGCTGAGATTTTCCTGAATGCTGGTGCAATTTGGTAAGGCTAAATGTATCTGAATCTGAATATTCCATAGCATTTGTATCAGCAGTACTAGTAGAGAAAAACTCAGAACCCTCATATATAAACAAACAACAAACATACCCAGTTTTATCCCACAAGTGGGGTCTAAGGAGGGTAAGTTGCACACAAACTTTATCCCTACCCCTACCTATGTGGGGATAGAGAGTGATATTTCCGATAGACCCCTCTTATATGTAGCTCATATTGGTAATTGTTGGGTCTTCTCTTTATTTCCTTTGCTATATGCTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTTAGCAAGGTTCCATACTTTCATTTCAATGCGCCTACCTTTTCTTTTTTCTTATTGAACTCTATTTGGTGCTGCAGTGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCT-GG--G--A--AG-------A-AACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACAAGGAAAACAGAGATTGTCTCTGCCTGGTAGCGGTAAGTCATCTCTCTCTCTCTTTCTTGTTTAATGATATTGCCTTGTGTAAGACGCTGGAAATGTTACACAATATAGACCCTCTTTGTTTTGCCCACTTCTTCTTGTTTGGCATAAAGATCGAAATATTGTTAATTGAAATTACCGTCTCCTCTATAAATAACCCTATCAATAAGCAAAAGTAGCACTGTAACTTGTTTAATGTTTCTCTGCGAAGCCCTCACAGAGGTAATGAATTTCGGAATGCTATGCTGAAGGAAAATTATTTATAAAAATTTTGTACTTATTTTTCACTTTTATTTTATTCAAGTACGATGATGATGTGAAATTTAGATAAATGAAGAACTGTCGACCCCAACGTGTTTGGACTGAGGCATAGTTGTTGTTGTCGCTATGCCGAAGGAATGGGCATGAACAGATCTTTATAATATTCGTACGTCTTTTCAGACAAATATGGTAGTGAGAGTGACAACACATATTCTGTAACCACACTAGTGTGTTGAAATATTCCTGCAACTAGTGCCGTATGCACTAATTTTTACGACATCTTTTTTCCAGGTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACCAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTTTTAGGTACTCGTTGAAGATCCCGATCTCAGAACCAAGTGTCACCCTTGCTTGTAAATACAGGGAACCTTCTTAAAGGGGAGTGATGGTATGTTGTCCACGGCAGAGTTAAAAGGAGATAGGCTTGCTGCCATCTCCTGAATAACATCTTCGCATTTGTTTCAATTCTTGTCATAATTCGTGTAATTTATATAATAGCGCGTTGTTTTCTTTACCCCTCCTCCCTCCCAGTGTAAAAAAGAGGATGAATTTGCTTTTTGTGCCACTTTTCTTGAGCTGAAAACTGGGGAATTTGGTGAGTTTGATTGCCAATTTCTTTGTTGTGTGTTGTACAAGATCTGAATGTAGGATTCATTCATTAATCTAGAGATTGTAGACCATATTGTGC</genome_strand>
        <mrna_strand>CTTGAACAACAATTAGAACATGACGCTCGTGTACGAGAGATCGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACAAGGAAAACAGAGATTGTCTCTGCCTGGTAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACTAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTTTTAGGTACTCGTTGAAGATCCCGATCTCAGAACCAAGTGTCACCCTTGCTTGTAAATACAGGGAACCTTCTTAAAGGGGAGTGATGGTATGTTGTCCACGGCAGAGTTAAAAGGAGATAGGCTTGCTGCCATCTCCTGAATAACATCTTCGCATTTGTTTCAATTCTTGTCATAATTCGTGTAATTTATATAATAGCGCGTTGTTTTCTTTACCCCTCCTCCCTCCCAGTGTAAAAAAGAGGATGAATTTGCTTTTTGTGCCACTTTTCTTGAGCTGAAAACTGGGGAATTTGGTGAGTTTGATTGCCAATTTCTTTGTTGTGTGTTGTACAAGATCTGAATGTAGGATTCATTCATTAATCTAGAGATTGTAGACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346081" ref_strand="+" ref_description="SGN-U346081        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ctacttgggtcttttctcttcatttttttgtatatgctatgtgtgtactcaaggacacatggtgcctctagtcagaattcaggaacaactatggaagaataaaaatagctgtcaatactgtggtatcattttatgatactggttaggcaggacatggtgaacctttagcttacttaggatatgaccttatattggagggtgtggaggtaaaaaattcgggtagaaggctagtagtaaatagtttctcatcttgtcctctcctgatagtagtattagtatgatttttcagtatttaatattgctttaatatttccatatttctcattcttagttttctataactagtctcgtatgcctctattttcttactagcttgcagttgttactgcttgtcttcataaatgttgtgttttagggtctattggaagcagcctctctacctgccaaggtaggggtaaggtctgtgacactaccctcctcagatctcacacttgggtaagttggcgttggtgttgtttgttggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="120120" stop="121263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120420" g_stop="120963" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U346081" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.034" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120420" e_stop="120963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTGGGTCTTTTCTCTTCATTTTTTT-TATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTT</genome_strand>
        <mrna_strand>CTACTTGGGTCTTTTCTCTTCATTTTTTTGTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAATTCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAACCTTTAGCTTACTTAGGATATGACCTTATATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGCTAGTAGTAAATAGTTTCTCATCTTGTCCTCTCCTGATAGTAGTATTAGTATGATTTTTCAGTATTTAATATTGCTTTAATATTTCCATATTTCTCATTCTTAGTTTTCTATAACTA---GTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATG-T-TG----TG--TT--TT------AGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCTCACACTTGGGTAAGTTGGCGTTGGTGTTGTTTGTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332758" ref_strand="+" ref_description="SGN-U332758        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 | chr3:19321510-19323264 REVERSE | Aliases: F4F15.170(evalue: 3e-38, score=155) genbank/nr: unknown(evalue: 2e-36, score=155)">
      <seq>ttctgttgcttcacttctttcacttcaatctttctccattaatggtgattttgctgtaacaagaaaatatgttcagattatctgtagttatcccttttcttactcttctcatttctgttcttattctcttcttattaggaccaaaaatcctcttacctcgacaaatctccatttctgtacccgatgaactcgacgatctttcactttttcacaaagcaattgctgctgaaaccacttttccgaaacacccatctcacaaaaaactccgtcttggatccgctactgttcgtccaccaaaaatcgcatttatgttcttaacaaattcagatttgaagttttccccaatttgggagaagttcttcaatggtactaaacctgtagatccacatctatacaatatctacatacacgctgacccatctatcaagatttcacctttaatgggtgtttttaaagatcgattaattccggcgaagagaactcaacgttcatcgccgacactcatatctgctgcccggagattacttgctcatgctttacttgacgacccatcaaactcgtatttcgctcttatctcacaacattgtatacctttacactcttttaattacttttacaattttttacttgatacccagaaattgtcgaggaaaatggagttccctagttatattgagattnctgatgaatctgattcgttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="125062" stop="126364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125362" g_stop="126064" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U332758" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125362" e_stop="126064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTCTTGATGAATCTGATTCGTTATT</genome_strand>
        <mrna_strand>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTNCTGATGAATCTGATTCGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339919" ref_strand="+" ref_description="SGN-U339919        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266 | chr3:19321510-19323264 REVERSE | Aliases: F4F15.170(evalue: 3e-61, score=233) genbank/nr: gi|77557088|gb|ABA99884.1| expressed protein [Oryza sativa (japonica cultivar-group)] (evalue: 2e-60, score=236)">
      <seq>attgagattcttgatgaatctgattccttattagataggtatgatgcgaaagggaataatataatggaacctgaggtgaaatttgaggaatttaaagttggttcacagttttttgtgttaacaagaaagcattctttaatggtgattaaagataggaagttatggaggaaatttagaaaaccatgtttaaatgttgagtcttgttatccagaagagcattattttcctactttgttatcaatggaggatcctaatggttgtaccaagtatacattgacaaatgtgaattggactgatacagttgatggtcatccacatacttatcatccttctgaggtttcttcaaagctgatttatgatcttagagagtcaaattctacatattcatacatgtttgcaaggaaattttcacctgattgcttgaaccctttgatggaaatggcagagtcagtcatcttcaaggactagttcttgcttgaggcaatggtgagatgatgaaggagtgaagacaaatcaaaggcaaaaactttgatgatgttgtgaggacaaaaaaagattggtttgttgtgtacgagtaacacatgtggaaataaggtttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="125733" stop="128131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126033" g_stop="126518" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126519" i_stop="127712" i_length="1194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127713" g_stop="127831" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="605" r_length="119" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U339919" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126033" e_stop="126518"/>
          <exon e_start="127713" e_stop="127831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGATTCTTGATGAATCTGATTCGTTATTAGATAGGTATAATGCAAGAGGGAAGAATATAATGGAACCTGAGGTGAAATTTGAGGAATTTAAAGTTGGTTCACAGTTTTTTGTGTTAACAAGAAAGCATTCTTTAATGGTGATCAAAGATAGGAAGTTATGGAGGAAATTTAGAAAACCATGTTTAAATGTTGAGTCTTGTTATCCAGAAGAGCATTATTTTCCTACTTTGTTATCAATGGAGGATCCTAATGGTTGTACCAAGTATACATTGACAAATGTGAATTGGACTGATACAGTTGATGGTCATCCACATACTTATCATCCTTCTGAGGTTTCTTCAAAGCTGATTTATGATCTTAGAGAGTCAAATTCTACATATTCATACATGTTTGCAAGGAAATTTTCACCTGATTGCTTGAACCCTTTGATGGAAATGGCAGAGTCAGTCATCTTCAAGGACTAGTTCTTGCTTGAGGCAATGGTAAGTGATGATTGCATACTTTCTTTTTTTCTCATTGAATTGACTTAGGTTTTACTGAGTTTTCCTTGTAGAATTAGGGAGTTTAGTTAGTACTTGTGTAGGTGTGAGGTAGCGAGTACCTTGTGAGATTAATTGCGACTAAGCTGATCCAAACACCATGATTCGATCGTTTGTTTGTGAGATTAATTGCGACTAAGTTGATCCAAACACCATGATTCAATCGTTTGTTTACTGTCCTTTTAAAGTATGTGTCTTTCCTTTTTTTTTGATATTTTTTAGTTCTAACAATTCACATTCACATGACATGTTTAAGAATACGTAGCATTTTAGTACTTCCTATGTATCTTTAGTACATGACCACAAAGTCTTTCTTACTTTCTTTTACTTTTGTAAACTTCATGCGAAGTTTAAATGAAAATCGGACAAACAAGTTGAAACGGAGGGAGTAAAGGAAATTAGGTTTTTTTTTGAAATGGATGGTTGTGATATAATATTCTAGAAGTGATGTTGGAATTGATAGGTTAACAATGCTTTTAATAGAACTTGACTATTTTGTTGGTGAATAGGTCTCTTCAATATGGCATATTTTTCTTATGAGGCATTATTTCAATCTTAACTAGGTGGGATTTTCATTTGATAAAGTCTTAAACTTTAGCATATTCATGTGAAAATTGGAATTTTTTTCTTAAAAGATACTTGTTGTGGTAGTAGTTTTGCCACTTACAAGTAGTAGTTGTGAAGGTTTTACAGATTCTTTGTATGATATTTTTTGGATGGTATGTAGCTATCCCTTATGACACATCTAACAAGAAATTTACAACTTTCACATGTGACACATTTTCTTTTTTCATTTGCACACTTTTGATTAGTCAAACTCTTGAATATACTATAGTATGAAATCTTGAAAATGTTGCACCTTGTCTTTGTATGTCACACCTCATCTCTTATGCCACTTTGTCTTGAACTAAAGGCAAATGAAAGGACAAGATAAAGAACAATAATTGATCAATTGTGTACTCTATTATATTTTAATCTTGATTTGAAGTTTGGACAAGTGTCTTAATCATCATTTAGAAAATTAGGAGGTTGGTTTGGTATATTTGAAGTCTAATACACCCCTATATGTCAAATGAAGCAATGAGATAGTGATTTAAAACTGACCATTGTTTTGTTTTATCTTATATTTTATAATAGGTGAGATGATGAAGGAGTGAAGACAAATCAAAGGCAAAAACTTTGATGATGTTGTGAGGACAAAAAAAGATTGGTTTGTTGTGTAGGAGTAACACATGTGGAAATAAGGTATTTTTTTT</genome_strand>
        <mrna_strand>ATTGAGATTCTTGATGAATCTGATTCCTTATTAGATAGGTATGATGCGAAAGGGAATAATATAATGGAACCTGAGGTGAAATTTGAGGAATTTAAAGTTGGTTCACAGTTTTTTGTGTTAACAAGAAAGCATTCTTTAATGGTGATTAAAGATAGGAAGTTATGGAGGAAATTTAGAAAACCATGTTTAAATGTTGAGTCTTGTTATCCAGAAGAGCATTATTTTCCTACTTTGTTATCAATGGAGGATCCTAATGGTTGTACCAAGTATACATTGACAAATGTGAATTGGACTGATACAGTTGATGGTCATCCACATACTTATCATCCTTCTGAGGTTTCTTCAAAGCTGATTTATGATCTTAGAGAGTCAAATTCTACATATTCATACATGTTTGCAAGGAAATTTTCACCTGATTGCTTGAACCCTTTGATGGAAATGGCAGAGTCAGTCATCTTCAAGGACTAGTTCTTGCTTGAGGCAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATGATGAAGGAGTGAAGACAAATCAAAGGCAAAAACTTTGATGATGTTGTGAGGACAAAAAAAGATTGGTTTGTTGTGTACGAGTAACACATGTGGAAATAAGGTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328096" ref_strand="+" ref_description="SGN-U328096        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ttttttttgaagggtttgttgaaaaacaacaatgccttcaaaccaagtaaatcccaaaagggaagtatccaaaactcaaagtttggatgagctttcaaagaaaagcaatggaaaagctagttttagtagtagtagttgagctggtaatttgatgatgtaaaacatgtcttagttgtagcatctagtattcatttggtgtttgtgtgtgttgctctctatattgttcggattcttcatgaataccgtccagagtgtgtctgatcctctaaaagctatgctttttttaaagatctgatacgaatgtgacaacaattttggagggtcggagcaatatgggttttgctttgtacatagatggcaagtatatatgtgttttagggagagattagccttgaacaaaatcaagaaaagtgctaaactctattggtttttttatttttctactacttgtggaaatgaatcattgtatcaaaacatttactatccaatgtagtaaatgatttttagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="127524" stop="128635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127824" g_stop="128334" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U328096" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127824" e_stop="128334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAA</genome_strand>
        <mrna_strand>TTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGGTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318659" ref_strand="+" ref_description="SGN-U318659        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: AT3G48030.1 | Symbol: None | hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein, similar to RING-H2 finger protein RHX1a (Arabidopsis thaliana) GI:3790591; contains Pfam profiles PF00097: Zinc finger C3HC4 type (RING finger), PF04588: Hypoxia induced protein conserved region | chr3:17736395-17738939 REVERSE | Aliases: T17F15.100 (evalue: 1e-18, score=90.9) genbank/nr: hypothetical(evalue: 1e-16, score=90.9)">
      <seq>tggaaaggaggagaagagagcggcacacgtagttacgcttcagacctcaaaatttcgactgaaaaagcagttacacaaagagaagagaagaagaacgaaaacaaataacgaagaaaattatgggatcgactgattcagaattggattcaatttttcaggataacaagcgtcatcgtaatcgtcttgttccgatcggtggctcagccgctacgatgtggtaaatccgcagtctcatctgcaagaacagcccaacgcaatgtagtagcatggctctaccacaaggcattaagcttacaattgaaccagcaactctttttcaagtttcctcgttcatttgctccccaccttcctaaatttgctttcagttttcaagttttaccctttaggcatgttttgaacattatataggacttgtttcaaggtacaggatgttacagattactctaggcgtatatgtcaatgatggtaattcagcctcgttaattggatcaatagctgttattaacttatgctatatatataactttataggttgggcttgagcttaaatgtgataaccaacttctcctatttccagaaaaagcaataatgcaactttgcaaaaccttgtctgattaactgtatggagtgttcgtatatgtttatgattataaggcgaggtcatttggtcttctgttatgaattcttgagaagtgatgcattttctgctgccttactttcctgtgagatatcgttcatgttaatcttcccaatcccggttgatcctccactgtttcaattttttggctaaattgtctctgaacactctcaactcatattctgtttgtgcaatttatgactttgcgaaatttcaggtgcatttctcactgcaggagtgctcactgccggactcattagtttcaagcggggaaattctcaattaggtcagcaactaatgagagctagagttcttgttcaaggtggtacagtcgcactgatggttggttcagcatattactatggagataatttcaagcgcgctggatgactgactgactgactaccaaacgactccctcattcgtctgtcatgagttgattttctgctgggaaaaaatgattccatatcttgctaggatgcagtttctttacatggctgtcattgccaccccaatcacataagaaagaaaatgtagaggaaaaagtaataacagagtgataacataatgataatgtttatgtatttttcaaaatttatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="131919" stop="135345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132219" g_stop="132413" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132414" i_stop="134003" i_length="1590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134004" g_stop="135045" g_length="1042"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="1239" r_length="1044" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U318659" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1237</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132219" e_stop="132413"/>
          <exon e_start="134004" e_stop="135045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCGGTACATTTTTGAAAAACCCTAATTTTACATATTTTTTTTTGTTTTTTTTTTTGCAGTATTGGATCGTCTGAAATAGTTAAATTTTGTATTTCATTGTGATGTTGTTTGTATAAGTATGTAATTTTTACTCAGTTTGTTAGTTTTTTGAGATTTTTCGTTGGTGAATTTGATTTACATGTGCGGATTGACTTGTGTTTGAGATTTATCTTCATATATGTGTAAAAGTTTCAGATCAAATCGAGCTAAAACGATAATGATTATGTTTACGCTCAAATAAGAGGTTTGAGTTGATTGTATGAATCCTTGTTGTTTAGTTAAGCTTATTTCATATTATTATCATTATATATTAAACTAAAGTGAAAAATAATTCGAGCTTGATTTAATAGTCATGTAGCATGAAGCAAATTATAGTCTAAATCTCAATATGTGCTTGAAGCTATTCTAGAAACGGGTTGCATCTAAGGGCTTTGGCTTGTGGACAGTGGAGCAGTGAAGAATCCTAAGGTTTTAGGTTCAAATTCCAACACGATAAAAAACACTGAGTGATTGGTTGGAGGGACAAGTATTCCGTGGAACTAATTGAGGTGTGCGTCAACTGGAAAGGACACCACGGTTATAGAAGGATGGATGCTAAGTTGATTAATATGTAAACTTGCATCTTTGTGTTAGAGCGTGAAGCTCTTGCATTTTACATGATAGTATTTTCATTTTTAGGAGAATTTGTTTTGCGCAATCACACACTGCACATATTGTACTTTGACTTCCTTTGGTTTTGATAGGATAATTCCACATGATTGTGGATTATATTTATCTTATCAATTCTGGACAGCAATCAGATGTCATTAATGCGTTCTGGTTTCATATATTTAATACGACTAGAATTTAGTAGTTAATCACATCTAGTCACACTCCTCTAGGGTTTAAAGCCCCGTAGGATCTATTTTTAATGTCATGGGATAAACTAATCGCACTCCAAAATGAGATTACTCTCACTACTGTGTTGAATAATTACCAGGGATTGCCTCTAGTACTTGCTGAATATATGCCACTGTTTTTTGGCTAAAATTCTTCTTCTTTCAAATACAAAAGTTGTACCAAATATTATGCTTCCTTTGTATTTCCCAGCTGTTGAATGGCACACTGTAAATGAAATGAATTTTTGAGTCATGTCTTAAATGATCCTTATGACGATATTAGGACATTTTTATGTCCCTGAAATATTAGTACCTAATTTGTTGAAACATAGGAGGTTCTCTGGCTTGTATTCCCTCAGTGAACTTTCTCAATGTTTTCCTTAAGAGATGTCCCATAATGATTGGAATGAAGTAAGAACCGAGCTCTAATACCCATAGGTTATGACCTTATCGATGTTTGAAATTATCCTGACTGTTTTGGTGCTGATTATTACTACTATGTTAGTTTCTGTCTCGTTTAAGCTATGAGGTAATCCATCTTACTTGCCGCAAAAGAGAACTTCAGATTCTGAGCTACTTTCTGCCTCTCTTAAGCAACACGATAATGTTTCTGTCCACAACACGCTTGCACCCTTTTTGAAACCATGGGCTATTATAACTGCTTCACATGATGCAGGTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAAT-TAGAGGAAAAAGTAATAACAGAGTGA-AACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGG</genome_strand>
        <mrna_strand>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATGTAGAGGAAAAAGTAATAACAGAGTGATAACATAATGATAATGTTTATGTATTTTTCAAAATTTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325178" ref_strand="+" ref_description="SGN-U325178        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | ubiquitin-conjugating enzyme 4 (UBC4), E2; identical to gi:431265, SP:P42748 | chr5:16555351-16557358 REVERSE | Aliases: MYC6.5, MYC6_5(evalue: 1e-74, score=276) genbank/nr: gi|136644|sp|P16577|UBC4_WHEAT Ubiquitin-conjugating enzyme E2-23 kDa (Ubiquitin-protein ligase) (Ubiquitin carrier protein) gi|100765|pir||A34506 23K ubiquitin carrier protein E2 - wheat gi|170782|gb|AAA34309.1| ubiquitin carrier protein(evalue: 6e-75, score=283)">
      <seq>tgacatggtaggtagtgggttacctttttgttgagctacagccatggaagctattttgaagaagaagacaaagtgcgaaggacaaattatcaattttttcagtaagaaaaaaaaaaagccgaaagattctgaggatcaatagttagttgaaaatgtcttctccaagcaaaagaagagatatggatgttatgaaattgatgatgagtgattataaggtggagacaattaatgatggaattacggagttcaacgtggaatttcacggcccaaaagaaagcctttatgaaggtggagtttggaaaataagggtcgagttgccagatgcctacccttacaagtctccttccatcgggtttctcaacaaaatattccaccctaatgttgatgagctgtctggctctgtatgtttggatgtcatcaatcagtcatggagccctatgtttgatctcttaaacgtttttgaggttttcctgccacagcttttgctatatccgaatccttcggatccattaaatggtgatgcagcctcactgatgatgaaagacaagaatcaatatgagcaaaaagtgaaagagtactgtgaacggtacgcaaagaaggagaatgtcgttggcacaccaaaagatgatagtgatgatgagattagtgaagaggagttcagtggacagagcgaaagcgatgatgaagttgttggacatgctgatccttgagtgaatagactaggatcctaaaatggagatcatgtttttagttcatttttctccttacatgtaatatccgattcgtcgtcgcatgtaaatctaggtgccaaagatagtttagggacaatatacataacctacagatgtgtgatgaatctcagtctgtgtagaaactctctaccttatggtcaatgtaacttaccaatatatgtgttaaaattcaggttcttgttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0323E19-TW1DN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0323E19.1" temp_strand="+" temp_description="C11HBa0323E19.1  AC171736.1 htgs_phase:3 submitted_to_sgn_as:093005.asm.C29 sequenced_by:ivf-caas upload_account_name:china11 ./093005.asm.assem.ace.2 from 13 to 141228">
        <position start="135601" stop="140178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135901" g_stop="136025" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136026" i_stop="137288" i_length="1263">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="137289" g_stop="137359" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="196" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="137360" i_stop="137536" i_length="177">
            <donor d_prob="0.199" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137537" g_stop="137616" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="276" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137617" i_stop="138493" i_length="877">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="138494" g_stop="138608" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="391" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="138609" i_stop="138820" i_length="212">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="138821" g_stop="138873" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="444" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="138874" i_stop="139302" i_length="429">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139303" g_stop="139431" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="573" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="139432" i_stop="139511" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.642" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="139512" g_stop="139878" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="939" r_length="366" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="940" polyA_stop="953"/>
      <MATCH_line gen_id="C11HBa0323E19.1" gen_strand="+" ref_id="SGN-U325178" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>940</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0323E19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135901" e_stop="136025"/>
          <exon e_start="137289" e_stop="137359"/>
          <exon e_start="137537" e_stop="137616"/>
          <exon e_start="138494" e_stop="138608"/>
          <exon e_start="138821" e_stop="138873"/>
          <exon e_start="139303" e_stop="139431"/>
          <exon e_start="139512" e_stop="139878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATGGTAGGTAGTGGGTTACCTTTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAATTTCTCAATTTTTTCAG-AAGAAAAAAAAAAAGCCGAAAGGTAAACGCATAGTAATCAAAGCCACGTAGCTGTTAGTATCATTCTTTTGTATATATACAATGCACGTGCCTTTTTTCAACTCTGTAACTCTGCCTAATGCCCCAACATGTCGACACCTTTCCCTTTTATATATATATAGAGAAGAAATTTTATTTATCTTTTTCTTTCATGTTCAGATCTTGTTGCATAATCCTCCTAGTTAAGTGTAAATTTGATTTTTGACGTGTGTAGATTTGTTTCTTGTTGTGTTTTTTTATGAAGAAATGAAATTGATTTTGATTTTATTGTGGATGGGGTACTTTTTTATTTGATGGGTGTGGTTTTTTTTGGCTAAAGTTTTGATCTTTTTCAATTTGGTTTTCATCTAATCTAATTTAATTTTTGTGCATTGCTAAGACTTAGTGTGTATCTTTGAATGTTGTGATTCTTTTAGTTTTAATTAATTGTTATGTGTAGTGGTTTCTTGGAATGGATTTGTGTGTTTTGAGGATTCAAGTTTGTGACTTTCTTTTTTTTTTTAATAAGCTTGCGTTCTCCTTGACTAATTCCACGGGTAGGTAGTTGTTATTGCTCCCACTAGGCTTGGACAAATGAGAATAAATCACTTAGTGTTTGTAAAGTGGTGGTTAGATTATCTACGGGGTGGAGTGTTGGTCGATCAAGAACTTGCACCTCTTGAAAATGAGCGTAGTGGAGAATGAGGATGTTGAGATGGATACATGAGCATATTAGGAGAGATTAGAATTAAGAAAGAAGCTATTCAGGACTAGGTGGGAGTGGCCTACATGGTGTAAGATGAGGGAGGTGAGATTGAGATAGTTTGGGCGTCTGAAGAGAAGATGCACATATGCCCCAATGATGAGGTGTCTGGTTGACTATTTTGGTATAAGGGGAGGTAGAGGTAGAACCGCAGAAATCTTGGGAAAGGTGAGTAGACATGACATACCACACCTTTAGTTTATCGATGACATGATCATAGATAGGAAGATATGGAGGTCGAGGATTGGGGTAGAAGGTTAGTAGGTAGTCGAGCATTATCTAGTTCCCTTATTTGCTGCAGTTACTGTATTATCCGTCGTTGTTGTAACCATTTATTTCTTATGCTCTTTCATAAACAGACGCGTAATTGCTGATCTCGTTGTTTGGTTTCTGTTTTTACATCTTTTTTACTGAACTTACGAACTTATATGTTGAATCCTGTTTTTACATCTTTTTTACTGAACTTACGAACTCATATGTTGAATCCTTGGCTTCATTCCGCAGATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATTGTAAGAACGTCTGAGATAAGATTTTCTTGCTGTCATGGATATAATTTTGTAGATTCTAAACAATTTAGCTGTTTCTTCATCTTATCTGATGAACCAACGTTTTTTAGTACATATGAATTCATATGGCAGCTTTTGATTACCACCATGAAGTCACTTTATGTCATTTTCATTTCACAGGATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAAGTAATGTCATGAAGATACTTGTTTCACTATGTTTTTTTATTGATTTCGTGACTTTGCTGAAGGATCATCTTCCCCTAGATTGGCGTTCTCCTTCTTAAAGTTAGTTTTTGAAGAGAGGGCAGCATTTTAATTGGATTAGTTTTTATTACGGTGATACAGCAATTTTAATTGTTTTTCAATTATGTATCTTAGATATCTCAAAAACGTTCCGTTGTTTATATAACACTCATCATCCTACATTTTAGCATAAGATTAACCAAATCAAGACCTTTTTGCTCTCAGTCTTGGAAGTAGCTTTTCCGCCAGAATCTTGCGCTTGTTGCTTTTCGCGCAGAGAAAAGCACATTACATAATATATGATATTGCTATTGGAGGTGCTATTTGCTTAGATAACTATATTTCTCAGACTCGGGTGTTTATCTAGAGGTCGGATTATTCTTCACATAAATTTTAGGATTCGACCCCCGAGTGCGGATACAGCCAATAAATGTATATCACGACATATAGTAGTATATATTTTGATTAATTAAAGTTATTGGCGTACAACTAATGAAACTTTATTTTTATAAGCACCTTATATTTATTCATAAGTCTGGTGTTCTAGCAAAACATTTCATACTTTATAAAACTATAGATATATGTCTAATCAACCAAATACCTAGTCAGTCATACTTCTTAGTCATAGATGTAGTCAAAGCAGTCAAGATGTTAACCAAATTTAGTGTGGATCTCACACCCAAATTGTGTCCTGCCGACATGGGTGTGATAGGGATTTCGACGGGTCAGAGCTACATAGTTAGATAATGCAGACTCATACATTTAGTTTGTTGTAAATATTTTTTTTTCCGTACTTAGCTAACTATCTAAATTGTTACAGGCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCTGTAAGATATATATACCTTCTTTCTGTATTTTTAGCAACTACCATTTTTCTCTGTCAGTCACATGTAGGAAGTTACGGTAGATTGTTTTTATGTATGGTAGCTGCAATTCGTCTTTTAATCTCTTTGCCGAACCTCTGTAACATAAGTCTATGTAGTTCATCTGTGGAAAATGTTAATGCACTATTGCTCACAAGATTCATCTGTTATTGCAGGTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTGGTAATACGTACTGCTAAGTGACAAAGCATTAAGATTCTTAGGGTGAAAAATGCTTAACCGCATGAGCTCTTACTTGTGCGTAGTTTGTTTCACACGTATGCATTTCACTTTATCATATGACTGAAGTGTTTCTACTCGAGGTTCTTTAAGCATAGGCTGTAGATATGAACTAATCGAAGACAAAAAAAATGTGCAGTGACACCCTGTAGGCTAAGTTTTATATAATAGAAGCTCAACTCTTATCCCACCATTCAGAATATGTTACAAAATACCTTTGTAATGAAAATCACTAGACGTGTCATTCGTGGTTTTATTTAATGCAAGTGACATATAATTTAGTATTGTCTTGTACTCCATATATCTTCATGTTGATAACATGATAAAACATTTAGCTCCGCGATATCTGACCAAGCATATGCTGGTGTGCAGATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAGGTGATATACAATTCTACTTTTATCTGAGAATGTGAAACCAGTGACCGTAAATCCGTCTTACTTCTTGTTTCATGATCCAGAGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAAACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTGTTAAAAATTCAGGTTCTTGTTTTAAA</genome_strand>
        <mrna_strand>TGACATGGTAGGTAGTGGGTTACC-TTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAAATTATCAATTTTTTCAGTAAGAAAAAAAAAAAGCCGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT.................................................................................................................................................................................GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT....................................................................................................................................................................................................................GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG................................................................................AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAGAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAGACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTGTT-AAAATTCAGGTTCTTGTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>35</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13424" PGL_stop="3992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13424" e_stop="13255"/>
            <exon e_start="12498" e_stop="12442"/>
            <exon e_start="12244" e_stop="12137"/>
            <exon e_start="10634" e_stop="10590"/>
            <exon e_start="9797" e_stop="9685"/>
            <exon e_start="8227" e_stop="8161"/>
            <exon e_start="7659" e_stop="7593"/>
            <exon e_start="6734" e_stop="6637"/>
            <exon e_start="6523" e_stop="6344"/>
            <exon e_start="6217" e_stop="6007"/>
            <exon e_start="5892" e_stop="5628"/>
            <exon e_start="5495" e_stop="5441"/>
            <exon e_start="5215" e_stop="5054"/>
            <exon e_start="4476" e_stop="3992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.762" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13424" e_stop="13255" e_length="170"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13254" i_stop="12499" i_length="756"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12498" e_stop="12442" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="12441" i_stop="12245" i_length="197"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12244" e_stop="12137" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.959" acc_prob="0.909">
            <gDNA_intron_boundary i_start="12136" i_stop="10635" i_length="1502"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10634" e_stop="10590" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="10589" i_stop="9798" i_length="792"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="9797" e_stop="9685" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9684" i_stop="8228" i_length="1457"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="8227" e_stop="8161" e_length="67"/>
          </exon>
          <intron i_serial="6" don_prob="0.703" acc_prob="0.936">
            <gDNA_intron_boundary i_start="8160" i_stop="7660" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="7659" e_stop="7593" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.919" acc_prob="0.990">
            <gDNA_intron_boundary i_start="7592" i_stop="6735" i_length="858"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="6734" e_stop="6637" e_length="98"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6636" i_stop="6524" i_length="113"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="6523" e_stop="6344" e_length="180"/>
          </exon>
          <intron i_serial="9" don_prob="0.960" acc_prob="0.916">
            <gDNA_intron_boundary i_start="6343" i_stop="6218" i_length="126"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="6217" e_stop="6007" e_length="211"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6006" i_stop="5893" i_length="114"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="5892" e_stop="5628" e_length="265"/>
          </exon>
          <intron i_serial="11" don_prob="0.959" acc_prob="0.992">
            <gDNA_intron_boundary i_start="5627" i_stop="5496" i_length="132"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="5495" e_stop="5441" e_length="55"/>
          </exon>
          <intron i_serial="12" don_prob="0.762" acc_prob="0.790">
            <gDNA_intron_boundary i_start="5440" i_stop="5216" i_length="225"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="5215" e_stop="5054" e_length="162"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="5053" i_stop="4477" i_length="577"/>
          </intron>
          <exon e_serial="14" e_score="0.996">
            <gDNA_exon_boundary e_start="4476" e_stop="3992" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13424" stop="13255"/>
              <exon start="12498" stop="12442"/>
              <exon start="12244" stop="12137"/>
              <exon start="10634" stop="10590"/>
              <exon start="9797" stop="9685"/>
              <exon start="8227" stop="8161"/>
              <exon start="7659" stop="7593"/>
              <exon start="6734" stop="6637"/>
              <exon start="6523" stop="6344"/>
              <exon start="6217" stop="6061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6114" stop="6007"/>
              <exon start="5892" stop="5628"/>
              <exon start="5495" stop="5441"/>
              <exon start="5215" stop="5054"/>
              <exon start="4476" stop="3992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317517" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAGAATACAGAAACAAGCAAAGTGGCTTCAGATGGGAATAGACGAAAACAAAGCCGTAGTAGGGGACAAACTAATTCTGGTAGAGGGCGTGGTTCCCGAGTTGGTGATCAGACCAGGTTACAAGCAGTTTCTGCGTCAAATGATCTGTTCGAGAACTCTTACAAGAAG : TTGCAGGATAGTTTGCCTAAAGAGCAACTTGGGCATAATGGACAGACTGCATCAGAA : GAGGAGATCACTACTTTACGGGCAAAAATTGTGGCTTTGGAGGAAGAGCTTAGGAAATCCCGTCAAGAGGCCACAGATTATCAGTATCGGTGTCAACAGCTGGAAAAG : GAGCTGAAGGATCTTAAAGATTACGAGCAGCAGACAAAGCCAAAG : AGAACGAAAATAATGTCCGAGTTGCTAATATCTGTTTCAAAAGCTGAGAGACAAGAGGCTCGGATGAAAGTGCGCCAGGAATCATTGAGACTGGGCAATGTGGGAGTAATCAG : AGCTGGAACCATTATATCTGAGGCCTGGGAAGATGGGCAAGCACTAAAGGACCTGAATGCTCAACTT : AGAAACTTATTAGAAACAAAAGAAGCTATTGAACGGCAGCGTAAATTGTTGAAGAAACGACAACCAG : ATAAAAGTGATGGAGGAGATGTGGAGGGAGGTTTGCAGGAAGAAGATTCTTTCATTCAGGATGAAATCTACAAATCTCGTTTAACTAGCATCAAACGA : GAGGAGGATATGATAATGCGTGAGAGAGATCGGTATGAACTAGAGAAAGGAAGGCTCATTCGTGAAATGAAACGCATACGTGATGAAGACGGTTCTCGTTTTAACAATTTTCAGATTTTGAACCACCGATATGCCCTCTTAAACCTTCTTGGGAAAGGAGGATTTAGTGAGGTCTATAAG : GCTTTTGACTTGGTAGATCATAGATATGTTGCATGTAAGCTACATGGACTAAATGCTCAGTGGAGCGAAGAGAAGAAGCAAAGTTATATACGACATGCAATCAGGGAGTACAACATCCACAAGACTTTGGTGCACCATCACATTGTGCGGCTTTGGGACATTTTTGAGATAGATCAGAACACATTTTGCACTGTGTTGGAGTACTGTAGTG : GGAAGGACCTTGATGCAGTTCTCAAAGCAACACCTGTGTTGCCAGAAAGGGAAGCAAGAATCATCATTGTGCAGGTTTTTCAAGGCCTTATTTACTTAAATAAAAAGTCACAGAGGATCATCCATTATGATCTGAAGCCAGGGAATGTTCTATTTGATGAGCTTGGTGTTGCTAAAGTTACCGATTTTGGTCTAAGCAAGATAGTGGAAGATGATGTTGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCGGGAACGTACTG : GTATCTACCTCCCGAATGCTTTGAGCTAAGCAAGACACCTCTTATATCCTCGAGA : GTTGATGTCTGGTCAGCTGGTATTTTGTTGTACCAAATGCTGTTTGGTAAACGCCCCTTTGGGCACGACCAAACACAAGAGAGAATACTAAGGGAGGACACAATTATTAAAGCAAGAAAGGTCGAGTTCCCTACAAGACCAGCTGTCTCTAATGAGGCAAAG : GAGTTTATTCGTCGTTGTTTAACATATAATCAAGCTGAGAGGCCAGATGTTTTGACTATCGCCCAAGACCCTTACTTGACATACACAAAGAAATGATACGAAGATGTTAATCACCACAACTTAGGCAGAGAGGTTCGTGTCTCTCGTCTATGTAAGTGGTTGCTCTCCTAATGTAGAGACGAGGAGTGGTGCTCGGGGAATTTTGTACAGTTGTAAAGCGCATGTAATTTTTTGTCCCTGTACCTTCATCTGGTCCATTACCATGTTTTCCATATTTTGGTTTTCTCATCTCGGAAGGTCTATTATGCCATGCTTATTTCATGTTTTGGAATTCGATGTGTGCATCGATGAAATTTCATGGCGATTTAAGAAATCAATTGTGTAGATTCTACCTACTAGTATGTTGGTAGAGGTTATACATACTTTGCTTGAGGAAAAAAAGACATTCAAGTGAAGTGGTTGATGAAAATATTTCATCATCTAAT</gDNA_template>
            <first_frame> *  R  I  Q  K  Q  A  K  W  L  Q  M  G  I  D  E  N  K  A  V  V  G  D  K  L  I  L  V  E  G  V  V  P  E  L  V  I  R  P  G  Y  K  Q  F  L  R  Q  M  I  C  S  R  T  L  T  R  S :   C  R  I  V  C  L  K  S  N  L  G  I  M  D  R  L  H  Q  K :   R  R  S  L  L  Y  G  Q  K  L  W  L  W  R  K  S  L  G  N  P  V  K  R  P  Q  I  I  S  I  G  V  N  S  W  K  R :   S  *  R  I  L  K  I  T  S  S  R  Q  S  Q  R :   E  R  K  *  C  P  S  C  *  Y  L  F  Q  K  L  R  D  K  R  L  G  *  K  C  A  R  N  H  *  D  W  A  M  W  E  *  S   : E  L  E  P  L  Y  L  R  P  G  K  M  G  K  H  *  R  T  *  M  L  N  L :   E  T  Y  *  K  Q  K  K  L  L  N  G  S  V  N  C  *  R  N  D  N  Q  :  I  K  V  M  E  E  M  W  R  E  V  C  R  K  K  I  L  S  F  R  M  K  S  T  N  L  V  *  L  A  S  N  E :   R  R  I  *  *  C  V  R  E  I  G  M  N  *  R  K  E  G  S  F  V  K  *  N  A  Y  V  M  K  T  V  L  V  L  T  I  F  R  F  *  T  T  D  M  P  S  *  T  F  L  G  K  E  D  L  V  R  S  I  R :   L  L  T  W  *  I  I  D  M  L  H  V  S  Y  M  D  *  M  L  S  G  A  K  R  R  S  K  V  I  Y  D  M  Q  S  G  S  T  T  S  T  R  L  W  C  T  I  T  L  C  G  F  G  T  F  L  R  *  I  R  T  H  F  A  L  C  W  S  T  V  V  :  G  R  T  L  M  Q  F  S  K  Q  H  L  C  C  Q  K  G  K  Q  E  S  S  L  C  R  F  F  K  A  L  F  T  *  I  K  S  H  R  G  S  S  I  M  I  *  S  Q  G  M  F  Y  L  M  S  L  V  L  L  K  L  P  I  L  V  *  A  R  *  W  K  M  M  L  D  P  R  V  W  N  S  H  P  R  E  R  E  R  T   : G  I  Y  L  P  N  A  L  S  *  A  R  H  L  L  Y  P  R  E :   L  M  S  G  Q  L  V  F  C  C  T  K  C  C  L  V  N  A  P  L  G  T  T  K  H  K  R  E  Y  *  G  R  T  Q  L  L  K  Q  E  R  S  S  S  L  Q  D  Q  L  S  L  M  R  Q  R :   S  L  F  V  V  V  *  H  I  I  K  L  R  G  Q  M  F  *  L  S  P  K  T  L  T  *  H  T  Q  R  N  D  T  K  M  L  I  T  T  T  *  A  E  R  F  V  S  L  V  Y  V  S  G  C  S  P  N  V  E  T  R  S  G  A  R  G  I  L  Y  S  C  K  A  H  V  I  F  C  P  C  T  F  I  W  S  I  T  M  F  S  I  F  W  F  S  H  L  G  R  S  I  M  P  C  L  F  H  V  L  E  F  D  V  C  I  D  E  I  S  W  R  F  K  K  S  I  V  *  I  L  P  T  S  M  L  V  E  V  I  H  T  L  L  E  E  K  K  T  F  K  *  S  G  *  *  K  Y  F  I  I  *  </first_frame>
            <second_frame>  R  E  Y  R  N  K  Q  S  G  F  R  W  E  *  T  K  T  K  P  *  *  G  T  N  *  F  W  *  R  A  W  F  P  S  W  *  S  D  Q  V  T  S  S  F  C  V  K  *  S  V  R  E  L  L  Q  E   : V  A  G  *  F  A  *  R  A  T  W  A  *  W  T  D  C  I  R   : R  G  D  H  Y  F  T  G  K  N  C  G  F  G  G  R  A  *  E  I  P  S  R  G  H  R  L  S  V  S  V  S  T  A  G  K   : G  A  E  G  S  *  R  L  R  A  A  D  K  A  K   : E  N  E  N  N  V  R  V  A  N  I  C  F  K  S  *  E  T  R  G  S  D  E  S  A  P  G  I  I  E  T  G  Q  C  G  S  N  Q  :  S  W  N  H  Y  I  *  G  L  G  R  W  A  S  T  K  G  P  E  C  S  T   : *  K  L  I  R  N  K  R  S  Y  *  T  A  A  *  I  V  E  E  T  T  T  R :   *  K  *  W  R  R  C  G  G  R  F  A  G  R  R  F  F  H  S  G  *  N  L  Q  I  S  F  N  *  H  Q  T   : R  G  G  Y  D  N  A  *  E  R  S  V  *  T  R  E  R  K  A  H  S  *  N  E  T  H  T  *  *  R  R  F  S  F  *  Q  F  S  D  F  E  P  P  I  C  P  L  K  P  S  W  E  R  R  I  *  *  G  L  *   : G  F  *  L  G  R  S  *  I  C  C  M  *  A  T  W  T  K  C  S  V  E  R  R  E  E  A  K  L  Y  T  T  C  N  Q  G  V  Q  H  P  Q  D  F  G  A  P  S  H  C  A  A  L  G  H  F  *  D  R  S  E  H  I  L  H  C  V  G  V  L  *  W :   E  G  P  *  C  S  S  Q  S  N  T  C  V  A  R  K  G  S  K  N  H  H  C  A  G  F  S  R  P  Y  L  L  K  *  K  V  T  E  D  H  P  L  *  S  E  A  R  E  C  S  I  *  *  A  W  C  C  *  S  Y  R  F  W  S  K  Q  D  S  G  R  *  C  W  I  P  G  Y  G  T  H  I  P  G  S  G  N  V  L  :  V  S  T  S  R  M  L  *  A  K  Q  D  T  S  Y  I  L  E   : S  *  C  L  V  S  W  Y  F  V  V  P  N  A  V  W  *  T  P  L  W  A  R  P  N  T  R  E  N  T  K  G  G  H  N  Y  *  S  K  K  G  R  V  P  Y  K  T  S  C  L  *  *  G  K   : G  V  Y  S  S  L  F  N  I  *  S  S  *  E  A  R  C  F  D  Y  R  P  R  P  L  L  D  I  H  K  E  M  I  R  R  C  *  S  P  Q  L  R  Q  R  G  S  C  L  S  S  M  *  V  V  A  L  L  M  *  R  R  G  V  V  L  G  E  F  C  T  V  V  K  R  M  *  F  F  V  P  V  P  S  S  G  P  L  P  C  F  P  Y  F  G  F  L  I  S  E  G  L  L  C  H  A  Y  F  M  F  W  N  S  M  C  A  S  M  K  F  H  G  D  L  R  N  Q  L  C  R  F  Y  L  L  V  C  W  *  R  L  Y  I  L  C  L  R  K  K  R  H  S  S  E  V  V  D  E  N  I  S  S  S  N </second_frame>
            <third_frame>   E  N  T  E  T  S  K  V  A  S  D  G  N  R  R  K  Q  S  R  S  R  G  Q  T  N  S  G  R  G  R  G  S  R  V  G  D  Q  T  R  L  Q  A  V  S  A  S  N  D  L  F  E  N  S  Y  K  K  :  L  Q  D  S  L  P  K  E  Q  L  G  H  N  G  Q  T  A  S  E  :  E  E  I  T  T  L  R  A  K  I  V  A  L  E  E  E  L  R  K  S  R  Q  E  A  T  D  Y  Q  Y  R  C  Q  Q  L  E  K  :  E  L  K  D  L  K  D  Y  E  Q  Q  T  K  P  K  :  R  T  K  I  M  S  E  L  L  I  S  V  S  K  A  E  R  Q  E  A  R  M  K  V  R  Q  E  S  L  R  L  G  N  V  G  V  I  R :   A  G  T  I  I  S  E  A  W  E  D  G  Q  A  L  K  D  L  N  A  Q  L  :  R  N  L  L  E  T  K  E  A  I  E  R  Q  R  K  L  L  K  K  R  Q  P   : D  K  S  D  G  G  D  V  E  G  G  L  Q  E  E  D  S  F  I  Q  D  E  I  Y  K  S  R  L  T  S  I  K  R  :  E  E  D  M  I  M  R  E  R  D  R  Y  E  L  E  K  G  R  L  I  R  E  M  K  R  I  R  D  E  D  G  S  R  F  N  N  F  Q  I  L  N  H  R  Y  A  L  L  N  L  L  G  K  G  G  F  S  E  V  Y  K  :  A  F  D  L  V  D  H  R  Y  V  A  C  K  L  H  G  L  N  A  Q  W  S  E  E  K  K  Q  S  Y  I  R  H  A  I  R  E  Y  N  I  H  K  T  L  V  H  H  H  I  V  R  L  W  D  I  F  E  I  D  Q  N  T  F  C  T  V  L  E  Y  C  S   : G  K  D  L  D  A  V  L  K  A  T  P  V  L  P  E  R  E  A  R  I  I  I  V  Q  V  F  Q  G  L  I  Y  L  N  K  K  S  Q  R  I  I  H  Y  D  L  K  P  G  N  V  L  F  D  E  L  G  V  A  K  V  T  D  F  G  L  S  K  I  V  E  D  D  V  G  S  Q  G  M  E  L  T  S  Q  G  A  G  T  Y  W :   Y  L  P  P  E  C  F  E  L  S  K  T  P  L  I  S  S  R  :  V  D  V  W  S  A  G  I  L  L  Y  Q  M  L  F  G  K  R  P  F  G  H  D  Q  T  Q  E  R  I  L  R  E  D  T  I  I  K  A  R  K  V  E  F  P  T  R  P  A  V  S  N  E  A  K  :  E  F  I  R  R  C  L  T  Y  N  Q  A  E  R  P  D  V  L  T  I  A  Q  D  P  Y  L  T  Y  T  K  K  *  Y  E  D  V  N  H  H  N  L  G  R  E  V  R  V  S  R  L  C  K  W  L  L  S  *  C  R  D  E  E  W  C  S  G  N  F  V  Q  L  *  S  A  C  N  F  L  S  L  Y  L  H  L  V  H  Y  H  V  F  H  I  L  V  F  S  S  R  K  V  Y  Y  A  M  L  I  S  C  F  G  I  R  C  V  H  R  *  N  F  M  A  I  *  E  I  N  C  V  D  S  T  Y  *  Y  V  G  R  G  Y  T  Y  F  A  *  G  K  K  D  I  Q  V  K  W  L  M  K  I  F  H  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13422" stop="13255"/>
                    <exon start="12498" stop="12442"/>
                    <exon start="12244" stop="12137"/>
                    <exon start="10634" stop="10590"/>
                    <exon start="9797" stop="9685"/>
                    <exon start="8227" stop="8161"/>
                    <exon start="7659" stop="7593"/>
                    <exon start="6734" stop="6637"/>
                    <exon start="6523" stop="6344"/>
                    <exon start="6217" stop="6007"/>
                    <exon start="5892" stop="5628"/>
                    <exon start="5495" stop="5441"/>
                    <exon start="5215" stop="5054"/>
                    <exon start="4476" stop="4381"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1689</number_coding_nucleotides>
                  <number_encoded_amino_acids>563</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENTETSKVASDGNRRKQSRSRGQTNSGRGRGSRVGDQTRLQAVSASNDLFENSYKKLQDSLPKEQLGHNGQTASEEEITTLRAKIVALEEELRKSRQEATDYQYRCQQLEKELKDLKDYEQQTKPKRTKIMSELLISVSKAERQEARMKVRQESLRLGNVGVIRAGTIISEAWEDGQALKDLNAQLRNLLETKEAIERQRKLLKKRQPDKSDGGDVEGGLQEEDSFIQDEIYKSRLTSIKREEDMIMRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVDHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHHHIVRLWDIFEIDQNTFCTVLEYCSGKDLDAVLKATPVLPEREARIIIVQVFQGLIYLNKKSQRIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSRVDVWSAGILLYQMLFGKRPFGHDQTQERILREDTIIKARKVEFPTRPAVSNEAKEFIRRCLTYNQAERPDVLTIAQDPYLTYTKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4352" stop="4092"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AERFVSLVYVSGCSPNVETRSGARGILYSCKAHVIFCPCTFIWSITMFSIFWFSHLGRSIMPCLFHVLEFDVCIDEISWRFKKSIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16507" PGL_stop="16017"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16507" e_stop="16017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="16507" e_stop="16017" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16507" stop="16017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331457" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTTTTTAGTACTTCCCTCTCTTTGATTCTTTCCATTTTCCTCAAGAAAAGGGAATTAAATTAACCCTAAATCTCCTCTGTCCCATTTCCTTACAAGAAGTTGTCAAAAGGGTTGAATTGATTTCTCTGATGCTGCCGTTTTCTTGATTGTACAACTCTTTTTGACTAAAAGGGTGTCTTAGAATCGCTTCAAATCATCAAAAAGACACCAAAGTTCACTTTTTTAGGTTGTTTGTTGTTCTGGGTCAGTTGTGAATGATCTGATACCTTTGTTGTTTTTTTTAAGAATGGCTGATGATATGGTCATTCATTTTGCATCCAATTCTTCTAACCAATCTGACCAGTCTTTGCCTACAAAAATTGCGAAACTTGAGGCAAGAATGGTGGGGAAAGCTTCATCTGTTACATCTCAAGCTAATTCCTGGTCTTCCCCAGCTATGTTTGAGAATGTTGCTGAGCCTGCCACCGTCTCTAGTGATTCAGATGATG</gDNA_template>
            <first_frame> S  F  F  S  T  S  L  S  L  I  L  S  I  F  L  K  K  R  E  L  N  *  P  *  I  S  S  V  P  F  P  Y  K  K  L  S  K  G  L  N  *  F  L  *  C  C  R  F  L  D  C  T  T  L  F  D  *  K  G  V  L  E  S  L  Q  I  I  K  K  T  P  K  F  T  F  L  G  C  L  L  F  W  V  S  C  E  *  S  D  T  F  V  V  F  F  K  N  G  *  *  Y  G  H  S  F  C  I  Q  F  F  *  P  I  *  P  V  F  A  Y  K  N  C  E  T  *  G  K  N  G  G  E  S  F  I  C  Y  I  S  S  *  F  L  V  F  P  S  Y  V  *  E  C  C  *  A  C  H  R  L  *  *  F  R  *   </first_frame>
            <second_frame>  L  F  L  V  L  P  S  L  *  F  F  P  F  S  S  R  K  G  N  *  I  N  P  K  S  P  L  S  H  F  L  T  R  S  C  Q  K  G  *  I  D  F  S  D  A  A  V  F  L  I  V  Q  L  F  L  T  K  R  V  S  *  N  R  F  K  S  S  K  R  H  Q  S  S  L  F  *  V  V  C  C  S  G  S  V  V  N  D  L  I  P  L  L  F  F  L  R  M  A  D  D  M  V  I  H  F  A  S  N  S  S  N  Q  S  D  Q  S  L  P  T  K  I  A  K  L  E  A  R  M  V  G  K  A  S  S  V  T  S  Q  A  N  S  W  S  S  P  A  M  F  E  N  V  A  E  P  A  T  V  S  S  D  S  D  D  </second_frame>
            <third_frame>   F  F  *  Y  F  P  L  F  D  S  F  H  F  P  Q  E  K  G  I  K  L  T  L  N  L  L  C  P  I  S  L  Q  E  V  V  K  R  V  E  L  I  S  L  M  L  P  F  S  *  L  Y  N  S  F  *  L  K  G  C  L  R  I  A  S  N  H  Q  K  D  T  K  V  H  F  F  R  L  F  V  V  L  G  Q  L  *  M  I  *  Y  L  C  C  F  F  *  E  W  L  M  I  W  S  F  I  L  H  P  I  L  L  T  N  L  T  S  L  C  L  Q  K  L  R  N  L  R  Q  E  W  W  G  K  L  H  L  L  H  L  K  L  I  P  G  L  P  Q  L  C  L  R  M  L  L  S  L  P  P  S  L  V  I  Q  M  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16278" stop="16018"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVCCSGSVVNDLIPLLFFLRMADDMVIHFASNSSNQSDQSLPTKIAKLEARMVGKASSVTSQANSWSSPAMFENVAEPATVSSDSDD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16220" stop="16017"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EWLMIWSFILHPILLTNLTSLCLQKLRNLRQEWWGKLHLLHLKLIPGLPQLCLRMLLSLPPSLVIQMM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="22857" PGL_stop="18443"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22857" e_stop="22503"/>
            <exon e_start="22367" e_stop="22314"/>
            <exon e_start="20954" e_stop="20838"/>
            <exon e_start="20732" e_stop="20574"/>
            <exon e_start="19670" e_stop="19509"/>
            <exon e_start="19420" e_stop="19304"/>
            <exon e_start="19187" e_stop="19080"/>
            <exon e_start="18919" e_stop="18443"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.996" e_score="0.978"/>
          <exon-intron don_prob="0.565" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.810" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.715" e_score="0.981"/>
          <exon-intron don_prob="0.560" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="22857" e_stop="22503" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.996">
            <gDNA_intron_boundary i_start="22502" i_stop="22368" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22367" e_stop="22314" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.565" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22313" i_stop="20955" i_length="1359"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20954" e_stop="20838" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.810" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20837" i_stop="20733" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="20732" e_stop="20574" e_length="159"/>
          </exon>
          <intron i_serial="4" don_prob="0.589" acc_prob="0.812">
            <gDNA_intron_boundary i_start="20573" i_stop="19671" i_length="903"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="19670" e_stop="19509" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.715">
            <gDNA_intron_boundary i_start="19508" i_stop="19421" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19420" e_stop="19304" e_length="117"/>
          </exon>
          <intron i_serial="6" don_prob="0.560" acc_prob="0.992">
            <gDNA_intron_boundary i_start="19303" i_stop="19188" i_length="116"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19187" e_stop="19080" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.616" acc_prob="0.994">
            <gDNA_intron_boundary i_start="19079" i_stop="18920" i_length="160"/>
          </intron>
          <exon e_serial="8" e_score="0.977">
            <gDNA_exon_boundary e_start="18919" e_stop="18443" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22857" stop="22537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22551" stop="22503"/>
              <exon start="22367" stop="22314"/>
              <exon start="20954" stop="20838"/>
              <exon start="20732" stop="20574"/>
              <exon start="19670" stop="19509"/>
              <exon start="19420" stop="19304"/>
              <exon start="19187" stop="19080"/>
              <exon start="18919" stop="18443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGATTAGAATTTCACTGTAAAACAATGGGTAAGCGAGAGAAGAAGGAGAAGAAATCAGCAAAATCAGAAGTTATGGAGGTAGAGGAATTATCAGAGGTAAAAATGAAGAAATCTAAGAGAGTGCGGAGTAAGAAAAGAAAAGAAGAAGATGAAGATGATGATGTTGAAGCTAATGAAGATCTCAGCTTGAAAATTGTTGAGAAAGCTTTGCTTCGTGGGTGCTCAACTGAAAATGGCGAAGTTGTGGTTGTTACAGATTTGAAGAAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAAAGAAGAAGAAGAAGAAGGAAAAGAATGTTGAGATTCCTGAAGACCCC : GTATCAAGTGGAATAGATAAGGGGTTTCAGAGCTTCTGTAGTGATATGTCTATG : GTGGATGGAATGAAAGAAGGTGAAAATGTGGTTAGTATAGATATGAATGTTGTTGACAATGCAGCTCAACAGAATCCCGTTGATATGTCTAATGGTGTCGTCCTACGAAGGCTTCTT : CGGGGGCCCAGATACTTTGATCCTCCAGATAGCAGTTGGGGGACGTGTTATAATTGTGGTGAAGAGGGTCATACGACAGTCAGTTGTACTTCAGCCAAACGCAAAAAACCATGTTTTGTTTGTGGGAGTTTTGATCATAATTCTAAACAGTGTACAAAG : GGCAAGGAGTGTTTCATTTGCAAGAAGGGCGGTCATCGTGCTAAGGATTGCCCTGAAAAAAGCCAAGGAGGATCTGAGAGTTCAAGAATGTGTTTAAAATGTGGGGATTCTGGGCATGATATGCTGTCATGCTGGAATAACTATTCTGCTGATGATCTAAAG : GAAATACAATGTTACATTTGTAAGAGTTTTGGTCATCTTTGCTGTGCAAGCTACCCCAATGGTGGTCCAAGTGAAATATCCTGTTACAGATGTGGTCTACTAGGCCATACCGGTTTG : GCATGCACAGGATCTCGTGGGGAAACTAGTGGTACATGGCATCTTAGTTCTTGTTTTAGGTGTGGCGAAGAAGGGCATTTTGCACGAGAATGCACTAATTCCAATATA : GTCAATAAGTGGAATCGGGAATCATCAACCCCCAAGAAGAAAGTGTTCAAGGAAAGAAAGGAAAATTATGAGTTCCAATCTGCTCCTCATGAATATGGCAAGGCAAGAAAAAAGAACACACAATACGGAGAAGGATATGCATCAGGGTACAATACAAAACATAGAGCTGGTTGGATCACCGATGATTCTGAAGACTTCCCTCAATCCAATGGTTGGAGATCTCCTTCAACTCCTGGACATAAGAGAGCCAGGACATCCAACTTCGGTTCTGGTGATCATTCTTCTGTTTCTTATTCATCTAGAAAGTCCAACAGGCTCGACTTTAACGATTCAACTCCTTATGGATCAGTCAAACATCATAATCACCATAGGTTTTCAGCTTCGCGATTTGGCAACAGTAGTCATGATGGGAGGAGAAATTATGAATGGTAACAGAAACCCTTTATCATCTCTTTTTTTTGGATGACCAAATCTCCA</gDNA_template>
            <first_frame> S  I  R  I  S  L  *  N  N  G  *  A  R  E  E  G  E  E  I  S  K  I  R  S  Y  G  G  R  G  I  I  R  G  K  N  E  E  I  *  E  S  A  E  *  E  K  K  R  R  R  *  R  *  *  C  *  S  *  *  R  S  Q  L  E  N  C  *  E  S  F  A  S  W  V  L  N  *  K  W  R  S  C  G  C  Y  R  F  E  E  E  R  E  R  E  R  E  R  E  R  E  R  E  K  E  E  E  E  E  G  K  E  C  *  D  S  *  R  P   : R  I  K  W  N  R  *  G  V  S  E  L  L  *  *  Y  V  Y   : G  G  W  N  E  R  R  *  K  C  G  *  Y  R  Y  E  C  C  *  Q  C  S  S  T  E  S  R  *  Y  V  *  W  C  R  P  T  K  A  S   : S  G  A  Q  I  L  *  S  S  R  *  Q  L  G  D  V  L  *  L  W  *  R  G  S  Y  D  S  Q  L  Y  F  S  Q  T  Q  K  T  M  F  C  L  W  E  F  *  S  *  F  *  T  V  Y  K   : G  Q  G  V  F  H  L  Q  E  G  R  S  S  C  *  G  L  P  *  K  K  P  R  R  I  *  E  F  K  N  V  F  K  M  W  G  F  W  A  *  Y  A  V  M  L  E  *  L  F  C  *  *  S  K   : G  N  T  M  L  H  L  *  E  F  W  S  S  L  L  C  K  L  P  Q  W  W  S  K  *  N  I  L  L  Q  M  W  S  T  R  P  Y  R  F   : G  M  H  R  I  S  W  G  N  *  W  Y  M  A  S  *  F  L  F  *  V  W  R  R  R  A  F  C  T  R  M  H  *  F  Q  Y   : S  Q  *  V  E  S  G  I  I  N  P  Q  E  E  S  V  Q  G  K  K  G  K  L  *  V  P  I  C  S  S  *  I  W  Q  G  K  K  K  E  H  T  I  R  R  R  I  C  I  R  V  Q  Y  K  T  *  S  W  L  D  H  R  *  F  *  R  L  P  S  I  Q  W  L  E  I  S  F  N  S  W  T  *  E  S  Q  D  I  Q  L  R  F  W  *  S  F  F  C  F  L  F  I  *  K  V  Q  Q  A  R  L  *  R  F  N  S  L  W  I  S  Q  T  S  *  S  P  *  V  F  S  F  A  I  W  Q  Q  *  S  *  W  E  E  K  L  *  M  V  T  E  T  L  Y  H  L  F  F  L  D  D  Q  I  S  </first_frame>
            <second_frame>  R  L  E  F  H  C  K  T  M  G  K  R  E  K  K  E  K  K  S  A  K  S  E  V  M  E  V  E  E  L  S  E  V  K  M  K  K  S  K  R  V  R  S  K  K  R  K  E  E  D  E  D  D  D  V  E  A  N  E  D  L  S  L  K  I  V  E  K  A  L  L  R  G  C  S  T  E  N  G  E  V  V  V  V  T  D  L  K  K  K  E  K  E  K  E  K  E  K  E  K  E  K  K  K  K  K  K  K  E  K  N  V  E  I  P  E  D  P  :  V  S  S  G  I  D  K  G  F  Q  S  F  C  S  D  M  S  M  :  V  D  G  M  K  E  G  E  N  V  V  S  I  D  M  N  V  V  D  N  A  A  Q  Q  N  P  V  D  M  S  N  G  V  V  L  R  R  L  L  :  R  G  P  R  Y  F  D  P  P  D  S  S  W  G  T  C  Y  N  C  G  E  E  G  H  T  T  V  S  C  T  S  A  K  R  K  K  P  C  F  V  C  G  S  F  D  H  N  S  K  Q  C  T  K  :  G  K  E  C  F  I  C  K  K  G  G  H  R  A  K  D  C  P  E  K  S  Q  G  G  S  E  S  S  R  M  C  L  K  C  G  D  S  G  H  D  M  L  S  C  W  N  N  Y  S  A  D  D  L  K  :  E  I  Q  C  Y  I  C  K  S  F  G  H  L  C  C  A  S  Y  P  N  G  G  P  S  E  I  S  C  Y  R  C  G  L  L  G  H  T  G  L  :  A  C  T  G  S  R  G  E  T  S  G  T  W  H  L  S  S  C  F  R  C  G  E  E  G  H  F  A  R  E  C  T  N  S  N  I  :  V  N  K  W  N  R  E  S  S  T  P  K  K  K  V  F  K  E  R  K  E  N  Y  E  F  Q  S  A  P  H  E  Y  G  K  A  R  K  K  N  T  Q  Y  G  E  G  Y  A  S  G  Y  N  T  K  H  R  A  G  W  I  T  D  D  S  E  D  F  P  Q  S  N  G  W  R  S  P  S  T  P  G  H  K  R  A  R  T  S  N  F  G  S  G  D  H  S  S  V  S  Y  S  S  R  K  S  N  R  L  D  F  N  D  S  T  P  Y  G  S  V  K  H  H  N  H  H  R  F  S  A  S  R  F  G  N  S  S  H  D  G  R  R  N  Y  E  W  *  Q  K  P  F  I  I  S  F  F  W  M  T  K  S  P </second_frame>
            <third_frame>   D  *  N  F  T  V  K  Q  W  V  S  E  R  R  R  R  R  N  Q  Q  N  Q  K  L  W  R  *  R  N  Y  Q  R  *  K  *  R  N  L  R  E  C  G  V  R  K  E  K  K  K  M  K  M  M  M  L  K  L  M  K  I  S  A  *  K  L  L  R  K  L  C  F  V  G  A  Q  L  K  M  A  K  L  W  L  L  Q  I  *  R  R  K  R  K  R  K  R  K  R  K  R  K  R  K  R  R  R  R  R  R  K  R  M  L  R  F  L  K  T  P :   Y  Q  V  E  *  I  R  G  F  R  A  S  V  V  I  C  L  W :   W  M  E  *  K  K  V  K  M  W  L  V  *  I  *  M  L  L  T  M  Q  L  N  R  I  P  L  I  C  L  M  V  S  S  Y  E  G  F  F :   G  G  P  D  T  L  I  L  Q  I  A  V  G  G  R  V  I  I  V  V  K  R  V  I  R  Q  S  V  V  L  Q  P  N  A  K  N  H  V  L  F  V  G  V  L  I  I  I  L  N  S  V  Q  R :   A  R  S  V  S  F  A  R  R  A  V  I  V  L  R  I  A  L  K  K  A  K  E  D  L  R  V  Q  E  C  V  *  N  V  G  I  L  G  M  I  C  C  H  A  G  I  T  I  L  L  M  I  *  R :   K  Y  N  V  T  F  V  R  V  L  V  I  F  A  V  Q  A  T  P  M  V  V  Q  V  K  Y  P  V  T  D  V  V  Y  *  A  I  P  V  W :   H  A  Q  D  L  V  G  K  L  V  V  H  G  I  L  V  L  V  L  G  V  A  K  K  G  I  L  H  E  N  A  L  I  P  I  * :   S  I  S  G  I  G  N  H  Q  P  P  R  R  K  C  S  R  K  E  R  K  I  M  S  S  N  L  L  L  M  N  M  A  R  Q  E  K  R  T  H  N  T  E  K  D  M  H  Q  G  T  I  Q  N  I  E  L  V  G  S  P  M  I  L  K  T  S  L  N  P  M  V  G  D  L  L  Q  L  L  D  I  R  E  P  G  H  P  T  S  V  L  V  I  I  L  L  F  L  I  H  L  E  S  P  T  G  S  T  L  T  I  Q  L  L  M  D  Q  S  N  I  I  I  T  I  G  F  Q  L  R  D  L  A  T  V  V  M  M  G  G  E  I  M  N  G  N  R  N  P  L  S  S  L  F  F  G  *  P  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22856" stop="22503"/>
                    <exon start="22367" stop="22314"/>
                    <exon start="20954" stop="20838"/>
                    <exon start="20732" stop="20574"/>
                    <exon start="19670" stop="19509"/>
                    <exon start="19420" stop="19304"/>
                    <exon start="19187" stop="19080"/>
                    <exon start="18919" stop="18488"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLEFHCKTMGKREKKEKKSAKSEVMEVEELSEVKMKKSKRVRSKKRKEEDEDDDVEANEDLSLKIVEKALLRGCSTENGEVVVVTDLKKKEKEKEKEKEKEKKKKKKKEKNVEIPEDPVSSGIDKGFQSFCSDMSMVDGMKEGENVVSIDMNVVDNAAQQNPVDMSNGVVLRRLLRGPRYFDPPDSSWGTCYNCGEEGHTTVSCTSAKRKKPCFVCGSFDHNSKQCTKGKECFICKKGGHRAKDCPEKSQGGSESSRMCLKCGDSGHDMLSCWNNYSADDLKEIQCYICKSFGHLCCASYPNGGPSEISCYRCGLLGHTGLACTGSRGETSGTWHLSSCFRCGEEGHFARECTNSNIVNKWNRESSTPKKKVFKERKENYEFQSAPHEYGKARKKNTQYGEGYASGYNTKHRAGWITDDSEDFPQSNGWRSPSTPGHKRARTSNFGSGDHSSVSYSSRKSNRLDFNDSTPYGSVKHHNHHRFSASRFGNSSHDGRRNYEW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25198" PGL_stop="29284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25198" e_stop="25285"/>
            <exon e_start="25622" e_stop="25685"/>
            <exon e_start="26965" e_stop="27109"/>
            <exon e_start="27201" e_stop="27358"/>
            <exon e_start="29164" e_stop="29284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.178" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25198" e_stop="25285" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.970">
            <gDNA_intron_boundary i_start="25286" i_stop="25621" i_length="336"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25622" e_stop="25685" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.972">
            <gDNA_intron_boundary i_start="25686" i_stop="26964" i_length="1279"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26965" e_stop="27109" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.959" acc_prob="0.994">
            <gDNA_intron_boundary i_start="27110" i_stop="27200" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27201" e_stop="27358" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.178" acc_prob="0.960">
            <gDNA_intron_boundary i_start="27359" i_stop="29163" i_length="1805"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29164" e_stop="29284" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25198" stop="25285"/>
              <exon start="25622" stop="25685"/>
              <exon start="26965" stop="27109"/>
              <exon start="27201" stop="27358"/>
              <exon start="29164" stop="29284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340333" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTTCTCAAATTTACAGCAAAATTAGCTCAAAATTCTCTTCAATTTCTTCATCGAATGACCATAATGACTCCTGCTCCTACCGAT : GAAGAGGAGGAGATGCTTGTTCCGCGTTCAGATTTGGTATTTGAAGGACCTCAGCCTATGGAAG : CACAAGCAGAAACCGGCAATGATGTGGAAAAGCAGCCACCAGAGGATCCTCAAACTTCAAGGTTTACTTGGAAGATAGATAACTTCTCTAGGTTGAATGTAAAGAAACTATACTCTGACCCTTTTGTTGTCGGTGGCTATAAATG : GCGGATTTTAATTTTTCCCAAGGGGAACAATGTTGATTACCTATCCATGTATCTGGATGTTGCTGATTCAGCTAATTTACCTTACGGGTGGAGTAGATATGCCCAGTTCAACTTGTCAATTGTTAACCAAATTCATAACAAGTACTCCATCAGAAAAG : AGACACAACACCAATTCAATGCCAGAGAAAGTGATTGGGGTTTCACATCCTTTATGCCACTTGGTGAACTATATGATCCAAACAAAGGTTATCTTGTTGATGATACATGTGTTGTTGATGC</gDNA_template>
            <first_frame> F  S  S  Q  I  Y  S  K  I  S  S  K  F  S  S  I  S  S  S  N  D  H  N  D  S  C  S  Y  R   : *  R  G  G  D  A  C  S  A  F  R  F  G  I  *  R  T  S  A  Y  G  S :   T  S  R  N  R  Q  *  C  G  K  A  A  T  R  G  S  S  N  F  K  V  Y  L  E  D  R  *  L  L  *  V  E  C  K  E  T  I  L  *  P  F  C  C  R  W  L  *  M  :  A  D  F  N  F  S  Q  G  E  Q  C  *  L  P  I  H  V  S  G  C  C  *  F  S  *  F  T  L  R  V  E  *  I  C  P  V  Q  L  V  N  C  *  P  N  S  *  Q  V  L  H  Q  K  R :   D  T  T  P  I  Q  C  Q  R  K  *  L  G  F  H  I  L  Y  A  T  W  *  T  I  *  S  K  Q  R  L  S  C  *  *  Y  M  C  C  *  C </first_frame>
            <second_frame>  F  L  L  K  F  T  A  K  L  A  Q  N  S  L  Q  F  L  H  R  M  T  I  M  T  P  A  P  T  D  :  E  E  E  E  M  L  V  P  R  S  D  L  V  F  E  G  P  Q  P  M  E   : A  Q  A  E  T  G  N  D  V  E  K  Q  P  P  E  D  P  Q  T  S  R  F  T  W  K  I  D  N  F  S  R  L  N  V  K  K  L  Y  S  D  P  F  V  V  G  G  Y  K  W :   R  I  L  I  F  P  K  G  N  N  V  D  Y  L  S  M  Y  L  D  V  A  D  S  A  N  L  P  Y  G  W  S  R  Y  A  Q  F  N  L  S  I  V  N  Q  I  H  N  K  Y  S  I  R  K   : E  T  Q  H  Q  F  N  A  R  E  S  D  W  G  F  T  S  F  M  P  L  G  E  L  Y  D  P  N  K  G  Y  L  V  D  D  T  C  V  V  D   </second_frame>
            <third_frame>   F  F  S  N  L  Q  Q  N  *  L  K  I  L  F  N  F  F  I  E  *  P  *  *  L  L  L  L  P  M :   K  R  R  R  C  L  F  R  V  Q  I  W  Y  L  K  D  L  S  L  W  K  :  H  K  Q  K  P  A  M  M  W  K  S  S  H  Q  R  I  L  K  L  Q  G  L  L  G  R  *  I  T  S  L  G  *  M  *  R  N  Y  T  L  T  L  L  L  S  V  A  I  N   : G  G  F  *  F  F  P  R  G  T  M  L  I  T  Y  P  C  I  W  M  L  L  I  Q  L  I  Y  L  T  G  G  V  D  M  P  S  S  T  C  Q  L  L  T  K  F  I  T  S  T  P  S  E  K  :  R  H  N  T  N  S  M  P  E  K  V  I  G  V  S  H  P  L  C  H  L  V  N  Y  M  I  Q  T  K  V  I  L  L  M  I  H  V  L  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25199" stop="25285"/>
                    <exon start="25622" stop="25685"/>
                    <exon start="26965" stop="27109"/>
                    <exon start="27201" stop="27358"/>
                    <exon start="29164" stop="29282"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLKFTAKLAQNSLQFLHRMTIMTPAPTDEEEEMLVPRSDLVFEGPQPMEAQAETGNDVEKQPPEDPQTSRFTWKIDNFSRLNVKKLYSDPFVVGGYKWRILIFPKGNNVDYLSMYLDVADSANLPYGWSRYAQFNLSIVNQIHNKYSIRKETQHQFNARESDWGFTSFMPLGELYDPNKGYLVDDTCVVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="29645" PGL_stop="33716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29645" e_stop="29731"/>
            <exon e_start="29807" e_stop="29915"/>
            <exon e_start="30007" e_stop="30122"/>
            <exon e_start="30337" e_stop="30435"/>
            <exon e_start="33611" e_stop="33716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.714" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29645" e_stop="29731" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="29732" i_stop="29806" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29807" e_stop="29915" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="29916" i_stop="30006" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30007" e_stop="30122" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.913" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30123" i_stop="30336" i_length="214"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30337" e_stop="30435" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.714" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30436" i_stop="33610" i_length="3175"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="33611" e_stop="33716" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29645" stop="29731"/>
              <exon start="29807" stop="29915"/>
              <exon start="30007" stop="30122"/>
              <exon start="30337" stop="30435"/>
              <exon start="33611" stop="33716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATGGGACACATATGATTCTTTCTTGCAGCATGATGTGCAAGAACTCAATCGTGTTCTCTGTGAAAAGCTTGAAGAAAAAATGAAG : GGTACTGTTGTGGAAGGCACTATACAGCAGTTATTCGAAGGGCACCATATGAACTATATTGAGTGCATCAATGTGGACTACAAATCTACGAGAAAGGAGTCATTTTATG : ATCTTCAGCTTGATGTCAAAGGGTGTGCTGATGTTTATGCTTCGTTTGATAAATATGTTGAAGTTGAACGTCTTGAGGGCGATAACAAGTACCATGCCGAACAATATGGTTTGCAG : GATGCTAAGAAGGGTGTCTTATTCATGGATTTCCCCCCTGTCCTGCAGCTTCAGTTAAAGCGCTTTGAATATGATTTTTCACGGGACACTATGGTAAAG : ATAAATGACAGGTATGAGTTCCCTCTGCAACTCGATCTAGATAGAGAGAATGGTAAATACTTGTCGCCTGAGGCAGATGGAAGTGTCAGAAACCTTTACACACTTC</gDNA_template>
            <first_frame> G  W  D  T  Y  D  S  F  L  Q  H  D  V  Q  E  L  N  R  V  L  C  E  K  L  E  E  K  M  K  :  G  T  V  V  E  G  T  I  Q  Q  L  F  E  G  H  H  M  N  Y  I  E  C  I  N  V  D  Y  K  S  T  R  K  E  S  F  Y   : D  L  Q  L  D  V  K  G  C  A  D  V  Y  A  S  F  D  K  Y  V  E  V  E  R  L  E  G  D  N  K  Y  H  A  E  Q  Y  G  L  Q  :  D  A  K  K  G  V  L  F  M  D  F  P  P  V  L  Q  L  Q  L  K  R  F  E  Y  D  F  S  R  D  T  M  V  K  :  I  N  D  R  Y  E  F  P  L  Q  L  D  L  D  R  E  N  G  K  Y  L  S  P  E  A  D  G  S  V  R  N  L  Y  T  L  </first_frame>
            <second_frame>  D  G  T  H  M  I  L  S  C  S  M  M  C  K  N  S  I  V  F  S  V  K  S  L  K  K  K  *  R :   V  L  L  W  K  A  L  Y  S  S  Y  S  K  G  T  I  *  T  I  L  S  A  S  M  W  T  T  N  L  R  E  R  S  H  F  M  :  I  F  S  L  M  S  K  G  V  L  M  F  M  L  R  L  I  N  M  L  K  L  N  V  L  R  A  I  T  S  T  M  P  N  N  M  V  C  R :   M  L  R  R  V  S  Y  S  W  I  S  P  L  S  C  S  F  S  *  S  A  L  N  M  I  F  H  G  T  L  W  *  R :   *  M  T  G  M  S  S  L  C  N  S  I  *  I  E  R  M  V  N  T  C  R  L  R  Q  M  E  V  S  E  T  F  T  H  F </second_frame>
            <third_frame>   M  G  H  I  *  F  F  L  A  A  *  C  A  R  T  Q  S  C  S  L  *  K  A  *  R  K  N  E   : G  Y  C  C  G  R  H  Y  T  A  V  I  R  R  A  P  Y  E  L  Y  *  V  H  Q  C  G  L  Q  I  Y  E  K  G  V  I  L  * :   S  S  A  *  C  Q  R  V  C  *  C  L  C  F  V  *  *  I  C  *  S  *  T  S  *  G  R  *  Q  V  P  C  R  T  I  W  F  A   : G  C  *  E  G  C  L  I  H  G  F  P  P  C  P  A  A  S  V  K  A  L  *  I  *  F  F  T  G  H  Y  G  K   : D  K  *  Q  V  *  V  P  S  A  T  R  S  R  *  R  E  W  *  I  L  V  A  *  G  R  W  K  C  Q  K  P  L  H  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29645" stop="29731"/>
                    <exon start="29807" stop="29915"/>
                    <exon start="30007" stop="30122"/>
                    <exon start="30337" stop="30435"/>
                    <exon start="33611" stop="33715"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GWDTYDSFLQHDVQELNRVLCEKLEEKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCADVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFMDFPPVLQLQLKRFEYDFSRDTMVKINDRYEFPLQLDLDRENGKYLSPEADGSVRNLYTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37402" PGL_stop="49687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37402" e_stop="37530"/>
            <exon e_start="37624" e_stop="37704"/>
            <exon e_start="37803" e_stop="37922"/>
            <exon e_start="38512" e_stop="38634"/>
            <exon e_start="39153" e_stop="39230"/>
            <exon e_start="39325" e_stop="39413"/>
            <exon e_start="39495" e_stop="39603"/>
            <exon e_start="40534" e_stop="40602"/>
            <exon e_start="40676" e_stop="40786"/>
            <exon e_start="41839" e_stop="41894"/>
            <exon e_start="42018" e_stop="42195"/>
            <exon e_start="42272" e_stop="42373"/>
            <exon e_start="42476" e_stop="42547"/>
            <exon e_start="42680" e_stop="42745"/>
            <exon e_start="42977" e_stop="43042"/>
            <exon e_start="44413" e_stop="44499"/>
            <exon e_start="44603" e_stop="44719"/>
            <exon e_start="44938" e_stop="45012"/>
            <exon e_start="45101" e_stop="45187"/>
            <exon e_start="45819" e_stop="46352"/>
            <exon e_start="47108" e_stop="47129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.829" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.496" acc_prob="0.483" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.864"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37402" e_stop="37530" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="37531" i_stop="37623" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37624" e_stop="37704" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.930">
            <gDNA_intron_boundary i_start="37705" i_stop="37802" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37803" e_stop="37922" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.982">
            <gDNA_intron_boundary i_start="37923" i_stop="38511" i_length="589"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38512" e_stop="38634" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.992">
            <gDNA_intron_boundary i_start="38635" i_stop="39152" i_length="518"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39153" e_stop="39230" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.741">
            <gDNA_intron_boundary i_start="39231" i_stop="39324" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39325" e_stop="39413" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39414" i_stop="39494" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39495" e_stop="39603" e_length="109"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.988">
            <gDNA_intron_boundary i_start="39604" i_stop="40533" i_length="930"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40534" e_stop="40602" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.985" acc_prob="0.990">
            <gDNA_intron_boundary i_start="40603" i_stop="40675" i_length="73"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="40676" e_stop="40786" e_length="111"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40787" i_stop="41838" i_length="1052"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="41839" e_stop="41894" e_length="56"/>
          </exon>
          <intron i_serial="10" don_prob="0.988" acc_prob="0.947">
            <gDNA_intron_boundary i_start="41895" i_stop="42017" i_length="123"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="42018" e_stop="42195" e_length="178"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.829">
            <gDNA_intron_boundary i_start="42196" i_stop="42271" i_length="76"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="42272" e_stop="42373" e_length="102"/>
          </exon>
          <intron i_serial="12" don_prob="0.953" acc_prob="0.989">
            <gDNA_intron_boundary i_start="42374" i_stop="42475" i_length="102"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="42476" e_stop="42547" e_length="72"/>
          </exon>
          <intron i_serial="13" don_prob="0.914" acc_prob="0.991">
            <gDNA_intron_boundary i_start="42548" i_stop="42679" i_length="132"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="42680" e_stop="42745" e_length="66"/>
          </exon>
          <intron i_serial="14" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42746" i_stop="42976" i_length="231"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="42977" e_stop="43042" e_length="66"/>
          </exon>
          <intron i_serial="15" don_prob="0.924" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43043" i_stop="44412" i_length="1370"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="44413" e_stop="44499" e_length="87"/>
          </exon>
          <intron i_serial="16" don_prob="0.496" acc_prob="0.483">
            <gDNA_intron_boundary i_start="44500" i_stop="44602" i_length="103"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="44603" e_stop="44719" e_length="117"/>
          </exon>
          <intron i_serial="17" don_prob="0.993" acc_prob="0.981">
            <gDNA_intron_boundary i_start="44720" i_stop="44937" i_length="218"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="44938" e_stop="45012" e_length="75"/>
          </exon>
          <intron i_serial="18" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45013" i_stop="45100" i_length="88"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="45101" e_stop="45187" e_length="87"/>
          </exon>
          <intron i_serial="19" don_prob="0.994" acc_prob="0.958">
            <gDNA_intron_boundary i_start="45188" i_stop="45818" i_length="631"/>
          </intron>
          <exon e_serial="20" e_score="1.000">
            <gDNA_exon_boundary e_start="45819" e_stop="46352" e_length="534"/>
          </exon>
          <intron i_serial="20" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="46353" i_stop="47107" i_length="755"/>
          </intron>
          <exon e_serial="21" e_score="0.864">
            <gDNA_exon_boundary e_start="47108" e_stop="47129" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37402" stop="37530"/>
              <exon start="37624" stop="37704"/>
              <exon start="37803" stop="37922"/>
              <exon start="38512" stop="38634"/>
              <exon start="39153" stop="39230"/>
              <exon start="39325" stop="39413"/>
              <exon start="39495" stop="39603"/>
              <exon start="40534" stop="40602"/>
              <exon start="40676" stop="40786"/>
              <exon start="41839" stop="41894"/>
              <exon start="42018" stop="42195"/>
              <exon start="42272" stop="42373"/>
              <exon start="42476" stop="42514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42337" stop="42373"/>
              <exon start="42476" stop="42547"/>
              <exon start="42680" stop="42745"/>
              <exon start="42977" stop="43042"/>
              <exon start="44413" stop="44499"/>
              <exon start="44603" stop="44719"/>
              <exon start="44938" stop="45012"/>
              <exon start="45101" stop="45187"/>
              <exon start="45819" stop="46352"/>
              <exon start="47108" stop="47129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATTTAATAATACTCCCTTCAAATTTACTAAGTACTCAAATGCTTACATGCTGGTCTATATTCGGGAATGTGACAAAGAGAAAATAATGTGTAATGTTGACGAGAAGGACATTGCTGAGCACCTTAGG : GCAAGGTTAAAGAGAGAACAAGAAGAGAAAGAGCAGAAGAAGAAGGAGAAAGCAGAGGCACACCTTTACACAATTATAAAG : GTTTCTCGTGATGAAGACCTCAGACAGCAGATTGGGAAGGACATACATTTTGATTTAGTGGATTATGACAAAGTTAGGAGTTTTCGCATTCAGAAGCAGACACTTTTTAGCATTTTTAAG : GAGGAAGTTGCCAAAGAATTTGGTGTACCAGTGCAATCTCAACGTTTTTGGTTATGGGCAAAGCGCCAGAATCATACATATCGTCCAAATCGGCCATTAACACATCTCGAAGAAGCTCAAACT : GTTGGACAGTTGAGGGAAGCGTCAAGTAAGGTTCAGAATGCAGAGCTAAAATTGTTCTTGGAAGTGGAGCTTGGACTG : GACTTGAGACACATCCCTCCACCTGACAAGACTAAAGATGATATTATGCTATTCTTCAAGATTTATGATCCTGAGAAAGAAGAGCTGAG : GTATGCTGGAAGACTCTTTGTAAAGGGAACGAGTAATCCAACTGAAATCTTGAACAAACTAAATGAAATGGCTGGCTATGCCCCTGATCAAGAGATTGAACTATATGAG : GAAATAAAATTTGAACCGATTGTCTTGTGTGAACCCATTAACAAGAAATTTGCTTTCCGAACGAACCAG : CTTGAGGATGGTGATATAGTATGCTATCAGAAATCCCTTTCTCCTGAAAGTCGCCAGAAGTTACGGTATCCAGATGTTCCTTCTTTCCTGGAGTATGTTCAAAATCGCCAG : GTGGTTCACTTCCGATACTTAGAAAAGTTGAAGGAGGATGATTTCTGTTTAGAGCT : GTCAAAGATTAATACATATGATGAAGTTGTGGAAAGAGTAGCTCAGCGACTTGGCTTGGATGATCCATCCAAAATAAGGCTCACACCCCATAATTGTTACTCTCAGCAACCTAAACCCCAGCCGATCAAGTACAGAGGTGTTGACACCCTTGGAGATATGCTGGTCCACTACAATCAG : ACATCTGATATTTTGTACTATGAAGTACTGGACATTCCTTTGCCAGAATTGCAAGGTTTAAAAACCTTAAAAGTAGCTTTTCATCATGCTACCAAAGATGAA : GTGGTCACTTACACTATCAGACTACCAAAACAATCTACTGTTGGTGATGTAATTAATGATTTAAAGACGAAG : GTAGAGTTGTCAAATCCAGATGCAGAATTAAGATTGCTAGAGGTCTTCTACCACAAAATTTATAAG : ATATTTCCAACAAGTGAGAAGATAGAGAACATAAATGACCAGTACTGGACATTGAGGGCCGAAGAG : ATTCCTGAAGAAGAGAAGAATCTAGGCCCGAATGCTCGTTTGATTCATGTGTATCACTTCAGTAAAGAAACTGCACAAAACCAAATG : CAAATTCAGAATTTTGGGGAACCTTTCCTCTTGGTTATCCATGAGGGTGAGACTTTAGTTCAAGTGAAGGTGCGAATACAGAAGAAATTGCAGGTCCCAGATGAAGAGTTTGCTAAG : TGGAAATTTGCATTCCTCTCACTTGGTCGTCCTGAGTACCTTGAGGACTCGGATATATTGTTCAACCGTTTCCAG : CGAAAGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAACATTCTGACAATGCCCCTAAAAGGATTAATGCAGCATATCAG : AATCGCCCGACGTACGAGAAGCCTGTTAAAATTTACAACTAGTAACGCCGCTGAAAATGAAGATTGTGAGATGGTTCAAATCTATGATTGACCATTGCATTTGTCCCTGAAGTTAAGAAGCCAGTTCGAGTCTGTACAGGGTTTTATGATTTTTGTTACTGAAGCATCTTGTATTCTGATATGGATGTGAAGTTTGATCCTAATGCAGCATCCATATCTCAGTACTTGAACTCAAGTGATGCGTAAATGGCCCATCGATAACTCTCTCTCTGTTCTAGTGTAAGTTAAGCGAGCCATACATTGGCAAAGAATTTTGAACAAATGAATGAATACATAATATATTGTGCTTGATTCAGTTCTGACTTTTATCTGAGGAGAAGAGTACTACTCAGTTTTCTGCCATTTTTTGGGCTCTATAGATGTGATTATTTCTGGTAGAGATTTTGAGGTTTTTCCCTCTGAAATTGTGTAACCTTAAGTTTGGTAATTTCTTGCTATTGTAATTAACCAGTAATTAAGAATGACAAATTGTTT : GTAAAAAAAAAGAACAAAAAAA</gDNA_template>
            <first_frame> G  F  N  N  T  P  F  K  F  T  K  Y  S  N  A  Y  M  L  V  Y  I  R  E  C  D  K  E  K  I  M  C  N  V  D  E  K  D  I  A  E  H  L  R  :  A  R  L  K  R  E  Q  E  E  K  E  Q  K  K  K  E  K  A  E  A  H  L  Y  T  I  I  K  :  V  S  R  D  E  D  L  R  Q  Q  I  G  K  D  I  H  F  D  L  V  D  Y  D  K  V  R  S  F  R  I  Q  K  Q  T  L  F  S  I  F  K  :  E  E  V  A  K  E  F  G  V  P  V  Q  S  Q  R  F  W  L  W  A  K  R  Q  N  H  T  Y  R  P  N  R  P  L  T  H  L  E  E  A  Q  T  :  V  G  Q  L  R  E  A  S  S  K  V  Q  N  A  E  L  K  L  F  L  E  V  E  L  G  L  :  D  L  R  H  I  P  P  P  D  K  T  K  D  D  I  M  L  F  F  K  I  Y  D  P  E  K  E  E  L  R :   Y  A  G  R  L  F  V  K  G  T  S  N  P  T  E  I  L  N  K  L  N  E  M  A  G  Y  A  P  D  Q  E  I  E  L  Y  E  :  E  I  K  F  E  P  I  V  L  C  E  P  I  N  K  K  F  A  F  R  T  N  Q  :  L  E  D  G  D  I  V  C  Y  Q  K  S  L  S  P  E  S  R  Q  K  L  R  Y  P  D  V  P  S  F  L  E  Y  V  Q  N  R  Q  :  V  V  H  F  R  Y  L  E  K  L  K  E  D  D  F  C  L  E  L :   S  K  I  N  T  Y  D  E  V  V  E  R  V  A  Q  R  L  G  L  D  D  P  S  K  I  R  L  T  P  H  N  C  Y  S  Q  Q  P  K  P  Q  P  I  K  Y  R  G  V  D  T  L  G  D  M  L  V  H  Y  N  Q  :  T  S  D  I  L  Y  Y  E  V  L  D  I  P  L  P  E  L  Q  G  L  K  T  L  K  V  A  F  H  H  A  T  K  D  E  :  V  V  T  Y  T  I  R  L  P  K  Q  S  T  V  G  D  V  I  N  D  L  K  T  K  :  V  E  L  S  N  P  D  A  E  L  R  L  L  E  V  F  Y  H  K  I  Y  K  :  I  F  P  T  S  E  K  I  E  N  I  N  D  Q  Y  W  T  L  R  A  E  E  :  I  P  E  E  E  K  N  L  G  P  N  A  R  L  I  H  V  Y  H  F  S  K  E  T  A  Q  N  Q  M  :  Q  I  Q  N  F  G  E  P  F  L  L  V  I  H  E  G  E  T  L  V  Q  V  K  V  R  I  Q  K  K  L  Q  V  P  D  E  E  F  A  K  :  W  K  F  A  F  L  S  L  G  R  P  E  Y  L  E  D  S  D  I  L  F  N  R  F  Q  :  R  K  D  V  Y  G  A  W  E  Q  Y  L  G  L  E  H  S  D  N  A  P  K  R  I  N  A  A  Y  Q  :  N  R  P  T  Y  E  K  P  V  K  I  Y  N  *  *  R  R  *  K  *  R  L  *  D  G  S  N  L  *  L  T  I  A  F  V  P  E  V  K  K  P  V  R  V  C  T  G  F  Y  D  F  C  Y  *  S  I  L  Y  S  D  M  D  V  K  F  D  P  N  A  A  S  I  S  Q  Y  L  N  S  S  D  A  *  M  A  H  R  *  L  S  L  C  S  S  V  S  *  A  S  H  T  L  A  K  N  F  E  Q  M  N  E  Y  I  I  Y  C  A  *  F  S  S  D  F  Y  L  R  R  R  V  L  L  S  F  L  P  F  F  G  L  Y  R  C  D  Y  F  W  *  R  F  *  G  F  S  L  *  N  C  V  T  L  S  L  V  I  S  C  Y  C  N  *  P  V  I  K  N  D  K  L  F  :  V  K  K  K  N  K  K  </first_frame>
            <second_frame>  D  L  I  I  L  P  S  N  L  L  S  T  Q  M  L  T  C  W  S  I  F  G  N  V  T  K  R  K  *  C  V  M  L  T  R  R  T  L  L  S  T  L  G :   Q  G  *  R  E  N  K  K  R  K  S  R  R  R  R  R  K  Q  R  H  T  F  T  Q  L  *  R :   F  L  V  M  K  T  S  D  S  R  L  G  R  T  Y  I  L  I  *  W  I  M  T  K  L  G  V  F  A  F  R  S  R  H  F  L  A  F  L  R :   R  K  L  P  K  N  L  V  Y  Q  C  N  L  N  V  F  G  Y  G  Q  S  A  R  I  I  H  I  V  Q  I  G  H  *  H  I  S  K  K  L  K  L :   L  D  S  *  G  K  R  Q  V  R  F  R  M  Q  S  *  N  C  S  W  K  W  S  L  D  W :   T  *  D  T  S  L  H  L  T  R  L  K  M  I  L  C  Y  S  S  R  F  M  I  L  R  K  K  S  *   : G  M  L  E  D  S  L  *  R  E  R  V  I  Q  L  K  S  *  T  N  *  M  K  W  L  A  M  P  L  I  K  R  L  N  Y  M  R :   K  *  N  L  N  R  L  S  C  V  N  P  L  T  R  N  L  L  S  E  R  T  S :   L  R  M  V  I  *  Y  A  I  R  N  P  F  L  L  K  V  A  R  S  Y  G  I  Q  M  F  L  L  S  W  S  M  F  K  I  A  R :   W  F  T  S  D  T  *  K  S  *  R  R  M  I  S  V  *  S   : C  Q  R  L  I  H  M  M  K  L  W  K  E  *  L  S  D  L  A  W  M  I  H  P  K  *  G  S  H  P  I  I  V  T  L  S  N  L  N  P  S  R  S  S  T  E  V  L  T  P  L  E  I  C  W  S  T  T  I  R :   H  L  I  F  C  T  M  K  Y  W  T  F  L  C  Q  N  C  K  V  *  K  P  *  K  *  L  F  I  M  L  P  K  M  K :   W  S  L  T  L  S  D  Y  Q  N  N  L  L  L  V  M  *  L  M  I  *  R  R  R :   *  S  C  Q  I  Q  M  Q  N  *  D  C  *  R  S  S  T  T  K  F  I  R :   Y  F  Q  Q  V  R  R  *  R  T  *  M  T  S  T  G  H  *  G  P  K  R :   F  L  K  K  R  R  I  *  A  R  M  L  V  *  F  M  C  I  T  S  V  K  K  L  H  K  T  K  C :   K  F  R  I  L  G  N  L  S  S  W  L  S  M  R  V  R  L  *  F  K  *  R  C  E  Y  R  R  N  C  R  S  Q  M  K  S  L  L  S :   G  N  L  H  S  S  H  L  V  V  L  S  T  L  R  T  R  I  Y  C  S  T  V  S  S :   E  R  M  F  M  V  L  G  S  S  I  L  A  W  N  I  L  T  M  P  L  K  G  L  M  Q  H  I  R :   I  A  R  R  T  R  S  L  L  K  F  T  T  S  N  A  A  E  N  E  D  C  E  M  V  Q  I  Y  D  *  P  L  H  L  S  L  K  L  R  S  Q  F  E  S  V  Q  G  F  M  I  F  V  T  E  A  S  C  I  L  I  W  M  *  S  L  I  L  M  Q  H  P  Y  L  S  T  *  T  Q  V  M  R  K  W  P  I  D  N  S  L  S  V  L  V  *  V  K  R  A  I  H  W  Q  R  I  L  N  K  *  M  N  T  *  Y  I  V  L  D  S  V  L  T  F  I  *  G  E  E  Y  Y  S  V  F  C  H  F  L  G  S  I  D  V  I  I  S  G  R  D  F  E  V  F  P  S  E  I  V  *  P  *  V  W  *  F  L  A  I  V  I  N  Q  *  L  R  M  T  N  C  L :   *  K  K  R  T  K  K </second_frame>
            <third_frame>   I  *  *  Y  S  L  Q  I  Y  *  V  L  K  C  L  H  A  G  L  Y  S  G  M  *  Q  R  E  N  N  V  *  C  *  R  E  G  H  C  *  A  P  *   : G  K  V  K  E  R  T  R  R  E  R  A  E  E  E  G  E  S  R  G  T  P  L  H  N  Y  K   : G  F  S  *  *  R  P  Q  T  A  D  W  E  G  H  T  F  *  F  S  G  L  *  Q  S  *  E  F  S  H  S  E  A  D  T  F  *  H  F  *   : G  G  S  C  Q  R  I  W  C  T  S  A  I  S  T  F  L  V  M  G  K  A  P  E  S  Y  I  S  S  K  S  A  I  N  T  S  R  R  S  S  N   : C  W  T  V  E  G  S  V  K  *  G  S  E  C  R  A  K  I  V  L  G  S  G  A  W  T   : G  L  E  T  H  P  S  T  *  Q  D  *  R  *  Y  Y  A  I  L  Q  D  L  *  S  *  E  R  R  A  E  :  V  C  W  K  T  L  C  K  G  N  E  *  S  N  *  N  L  E  Q  T  K  *  N  G  W  L  C  P  *  S  R  D  *  T  I  *   : G  N  K  I  *  T  D  C  L  V  *  T  H  *  Q  E  I  C  F  P  N  E  P   : A  *  G  W  *  Y  S  M  L  S  E  I  P  F  S  *  K  S  P  E  V  T  V  S  R  C  S  F  F  P  G  V  C  S  K  S  P   : G  G  S  L  P  I  L  R  K  V  E  G  G  *  F  L  F  R  A  :  V  K  D  *  Y  I  *  *  S  C  G  K  S  S  S  A  T  W  L  G  *  S  I  Q  N  K  A  H  T  P  *  L  L  L  S  A  T  *  T  P  A  D  Q  V  Q  R  C  *  H  P  W  R  Y  A  G  P  L  Q  S   : D  I  *  Y  F  V  L  *  S  T  G  H  S  F  A  R  I  A  R  F  K  N  L  K  S  S  F  S  S  C  Y  Q  R  *   : S  G  H  L  H  Y  Q  T  T  K  T  I  Y  C  W  *  C  N  *  *  F  K  D  E   : G  R  V  V  K  S  R  C  R  I  K  I  A  R  G  L  L  P  Q  N  L  *   : D  I  S  N  K  *  E  D  R  E  H  K  *  P  V  L  D  I  E  G  R  R   : D  S  *  R  R  E  E  S  R  P  E  C  S  F  D  S  C  V  S  L  Q  *  R  N  C  T  K  P  N   : A  N  S  E  F  W  G  T  F  P  L  G  Y  P  *  G  *  D  F  S  S  S  E  G  A  N  T  E  E  I  A  G  P  R  *  R  V  C  *   : V  E  I  C  I  P  L  T  W  S  S  *  V  P  *  G  L  G  Y  I  V  Q  P  F  P   : A  K  G  C  L  W  C  L  G  A  V  S  W  L  G  T  F  *  Q  C  P  *  K  D  *  C  S  I  S   : E  S  P  D  V  R  E  A  C  *  N  L  Q  L  V  T  P  L  K  M  K  I  V  R  W  F  K  S  M  I  D  H  C  I  C  P  *  S  *  E  A  S  S  S  L  Y  R  V  L  *  F  L  L  L  K  H  L  V  F  *  Y  G  C  E  V  *  S  *  C  S  I  H  I  S  V  L  E  L  K  *  C  V  N  G  P  S  I  T  L  S  L  F  *  C  K  L  S  E  P  Y  I  G  K  E  F  *  T  N  E  *  I  H  N  I  L  C  L  I  Q  F  *  L  L  S  E  E  K  S  T  T  Q  F  S  A  I  F  W  A  L  *  M  *  L  F  L  V  E  I  L  R  F  F  P  L  K  L  C  N  L  K  F  G  N  F  L  L  L  *  L  T  S  N  *  E  *  Q  I  V   : C  K  K  K  E  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37402" stop="37530"/>
                    <exon start="37624" stop="37704"/>
                    <exon start="37803" stop="37922"/>
                    <exon start="38512" stop="38634"/>
                    <exon start="39153" stop="39230"/>
                    <exon start="39325" stop="39413"/>
                    <exon start="39495" stop="39603"/>
                    <exon start="40534" stop="40602"/>
                    <exon start="40676" stop="40786"/>
                    <exon start="41839" stop="41894"/>
                    <exon start="42018" stop="42195"/>
                    <exon start="42272" stop="42373"/>
                    <exon start="42476" stop="42547"/>
                    <exon start="42680" stop="42745"/>
                    <exon start="42977" stop="43042"/>
                    <exon start="44413" stop="44499"/>
                    <exon start="44603" stop="44719"/>
                    <exon start="44938" stop="45012"/>
                    <exon start="45101" stop="45187"/>
                    <exon start="45819" stop="45860"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1854</number_coding_nucleotides>
                  <number_encoded_amino_acids>618</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFNNTPFKFTKYSNAYMLVYIRECDKEKIMCNVDEKDIAEHLRARLKREQEEKEQKKKEKAEAHLYTIIKVSRDEDLRQQIGKDIHFDLVDYDKVRSFRIQKQTLFSIFKEEVAKEFGVPVQSQRFWLWAKRQNHTYRPNRPLTHLEEAQTVGQLREASSKVQNAELKLFLEVELGLDLRHIPPPDKTKDDIMLFFKIYDPEKEELRYAGRLFVKGTSNPTEILNKLNEMAGYAPDQEIELYEEIKFEPIVLCEPINKKFAFRTNQLEDGDIVCYQKSLSPESRQKLRYPDVPSFLEYVQNRQVVHFRYLEKLKEDDFCLELSKINTYDEVVERVAQRLGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVDTLGDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVTYTIRLPKQSTVGDVINDLKTKVELSNPDAELRLLEVFYHKIYKIFPTSEKIENINDQYWTLRAEEIPEEEKNLGPNARLIHVYHFSKETAQNQMQIQNFGEPFLLVIHEGETLVQVKVRIQKKLQVPDEEFAKWKFAFLSLGRPEYLEDSDILFNRFQRKDVYGAWEQYLGLEHSDNAPKRINAAYQNRPTYEKPVKIYN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46803" e_stop="47107"/>
            <exon e_start="47320" e_stop="47356"/>
            <exon e_start="48754" e_stop="48837"/>
            <exon e_start="49203" e_stop="49550"/>
            <exon e_start="49656" e_stop="49687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.990"/>
          <exon-intron don_prob="0.969" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="46803" e_stop="47107" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47108" i_stop="47319" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47320" e_stop="47356" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47357" i_stop="48753" i_length="1397"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48754" e_stop="48837" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.860" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48838" i_stop="49202" i_length="365"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49203" e_stop="49550" e_length="348"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49551" i_stop="49655" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="0.750">
            <gDNA_exon_boundary e_start="49656" e_stop="49687" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46803" stop="47107"/>
              <exon start="47320" stop="47356"/>
              <exon start="48754" stop="48837"/>
              <exon start="49203" stop="49549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46935" stop="47107"/>
              <exon start="47320" stop="47356"/>
              <exon start="48754" stop="48837"/>
              <exon start="49203" stop="49550"/>
              <exon start="49656" stop="49687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323935" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATGGCAACAATACTCTCTCGCTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCTCCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAG : GGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATG : GTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAG : GATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATACAAGCTCACATATGAGGCTATCTCATTTTGGTTAAATTATATATTTTTCTTGAAAAAAGAAGGGTTACTAGTACTTTTAATCCCTCGATTATTGGTAGATTATATCTGTCTAAGCACATTTAACCTTTAGTCAATTGAATGTTATAGCTCATTACAATATGATGTATTTTGTCAAATAGCATTTGTCTTCACACAAACTTTACAAGTAATTGTTTTGCCAATTGACTTA : AAAATGGAACAAAAAACCAAAAAAAAAAACCA</gDNA_template>
            <first_frame> Q  W  Q  Q  Y  S  L  A  H  H  S  I  P  S  I  L  S  L  L  Q  Q  Q  F  V  H  P  Y  A  L  L  L  A  V  L  L  F  Q  Q  S  L  N  S  Q  S  C  Q  H  H  V  F  P  N  F  T  N  F  S  L  S  P  Q  I  I  I  I  P  F  C  S  L  L  V  L  I  L  P  L  W  I  L  K  L  F  L  P  L  S  V  F  *  L  P  L  L  S  P  S  F  L  A  S  R :   E  I  Q  F  L  V  I  G  V  L  G  M  :  V  G  Q  S  A  C  F  A  T  M  V  R  *  R  K  K  Q  D  *  *  T  A  K  F  A  R  V  Q  :  D  *  Y  S  A  R  N  V  L  V  L  D  T  Q  K  G  Y  N  I  Y  Y  L  Y  S  F  F  L  *  L  L  T  C  V  L  R  L  N  H  T  Y  K  L  T  Y  E  A  I  S  F  W  L  N  Y  I  F  F  L  K  K  E  G  L  L  V  L  L  I  P  R  L  L  V  D  Y  I  C  L  S  T  F  N  L  *  S  I  E  C  Y  S  S  L  Q  Y  D  V  F  C  Q  I  A  F  V  F  T  Q  T  L  Q  V  I  V  L  P  I  D  L  :  K  M  E  Q  K  T  K  K  K  N   </first_frame>
            <second_frame>  N  G  N  N  T  L  S  L  I  T  L  S  L  P  F  S  L  F  F  N  N  N  L  F  I  L  M  P  F  Y  L  L  S  F  F  S  N  K  A  *  I  P  S  L  V  N  I  M  F  F  P  I  S  P  I  F  P  F  P  H  K  S  S  S  S  H  F  A  L  C  W  F  *  F  S  P  F  G  Y  S  N  F  S  C  H  Y  Q  C  F  N  C  H  C  S  L  P  L  S  W  P  Q   : G  R  S  S  S  L  *  *  V  C  W  E  W :   W  D  K  V  R  V  L  Q  R  W  *  D  E  E  R  N  R  I  S  R  L  Q  S  L  Q  G  C  R :   I  N  T  L  Q  E  M  C  W  F  W  I  L  K  K  A  I  T  Y  T  T  C  T  L  F  S  S  S  Y  *  L  V  F  *  G  *  I  T  H  T  S  S  H  M  R  L  S  H  F  G  *  I  I  Y  F  S  *  K  K  K  G  Y  *  Y  F  *  S  L  D  Y  W  *  I  I  S  V  *  A  H  L  T  F  S  Q  L  N  V  I  A  H  Y  N  M  M  Y  F  V  K  *  H  L  S  S  H  K  L  Y  K  *  L  F  C  Q  L  T  * :   K  W  N  K  K  P  K  K  K  T  </second_frame>
            <third_frame>   M  A  T  I  L  S  R  S  S  L  Y  P  F  H  S  L  S  S  S  T  T  I  C  S  S  L  C  P  F  T  C  C  P  S  F  P  T  K  L  E  F  P  V  L  S  T  S  C  F  S  Q  F  H  Q  F  F  P  F  P  T  N  H  H  H  P  I  L  L  F  V  G  F  D  S  P  P  L  D  T  Q  T  F  L  A  T  I  S  V  L  T  A  I  A  L  S  L  F  L  G  L  K  :  G  D  P  V  P  C  D  R  C  A  G  N   : G  G  T  K  C  V  F  C  N  D  G  K  M  K  K  E  T  G  L  V  D  C  K  V  C  K  G  A   : G  L  I  L  C  K  K  C  A  G  S  G  Y  S  K  R  L  *  H  I  L  L  V  L  F  F  P  L  A  I  D  L  C  S  E  A  K  S  H  I  Q  A  H  I  *  G  Y  L  I  L  V  K  L  Y  I  F  L  E  K  R  R  V  T  S  T  F  N  P  S  I  I  G  R  L  Y  L  S  K  H  I  *  P  L  V  N  *  M  L  *  L  I  T  I  *  C  I  L  S  N  S  I  C  L  H  T  N  F  T  S  N  C  F  A  N  *  L   : K  N  G  T  K  N  Q  K  K  K  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46805" stop="47107"/>
                    <exon start="47320" stop="47356"/>
                    <exon start="48754" stop="48837"/>
                    <exon start="49203" stop="49255"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATILSRSSLYPFHSLSSSTTICSSLCPFTCCPSFPTKLEFPVLSTSCFSQFHQFFPFPTNHHHPILLFVGFDSPPLDTQTFLATISVLTAIALSLFLGLKGDPVPCDRCAGNGGTKCVFCNDGKMKKETGLVDCKVCKGAGLILCKKCAGSGYSKRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="46818" e_stop="47107"/>
            <exon e_start="47320" e_stop="47356"/>
            <exon e_start="48754" e_stop="49321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="0.969" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="46818" e_stop="47107" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="47108" i_stop="47319" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47320" e_stop="47356" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47357" i_stop="48753" i_length="1397"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="48754" e_stop="49321" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46818" stop="47107"/>
              <exon start="47320" stop="47356"/>
              <exon start="48754" stop="49321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTCGCTCATCACTCTATCCCTTCCATTCTCTCTCTTCTTCAACAACAATTTGTTCATCCTTATGCCCTTTTACTTGCTGTCCTTCTTTTCCAACAAAGCTTGAATTCCCAGTCTTGTCAACATCATGTTTTTCCCAATTTCACCAATTTTTCCCTTTCCCCACAAATCATCATCATCCCATTTTGCTCTTTGTTGGTTTTGATTCTCCCCCTTTGGATACTCAAACTTTTCTTGCCACTATCAGTGTTTTAACTGCCATTGCTCTCTCCCTCTTTCTTGGCCTCAAG : GGAGATCCAGTTCCTTGTGATAGGTGTGCTGGGAATG : GTGGGACAAAGTGCGTGTTTTGCAACGATGGTAAGATGAAGAAAGAAACAGGATTAGTAGACTGCAAAGTTTGCAAGGGTGCAGGTACTATTCAGCTGCAATTTCTTCGCGCTACCAATTTTTAGTAATCGTTCAGTTTGGAATACTTATAGCATGTCTAACAGATTTAGATGAACTCTCGAATTTGGATTTTAGATCATATGAATGACATGAAAGAACTTAGATAATCCTTTCCCATCTGTCAGGCTTGTATATACCCACGCTCCTGTTTATTATTTTCTAGAACCTCAGGAACTATGTTTCCGACTCACCCTTGGCTTTCTCCTTAGGTTTGTCAAGCCAACCTGACATGTTCAGATTGGAACACCTCGACGATGATGTAGTCAAACTAACATTTTTTCTCGAGTAGAATGCATCGAACGATCATTATAATAATTTTTTTATTGCAGGATTAATACTCTGCAAGAAATGTGCTGGTTCTGGATACTCAAAAAGGCTATAACATATACTACTTGTACTCTTTTTTCCTCTAGCTATTGACTTGTGTTCTGAGGCTAAATCACACATA</gDNA_template>
            <first_frame> S  L  A  H  H  S  I  P  S  I  L  S  L  L  Q  Q  Q  F  V  H  P  Y  A  L  L  L  A  V  L  L  F  Q  Q  S  L  N  S  Q  S  C  Q  H  H  V  F  P  N  F  T  N  F  S  L  S  P  Q  I  I  I  I  P  F  C  S  L  L  V  L  I  L  P  L  W  I  L  K  L  F  L  P  L  S  V  F  *  L  P  L  L  S  P  S  F  L  A  S  R :   E  I  Q  F  L  V  I  G  V  L  G  M  :  V  G  Q  S  A  C  F  A  T  M  V  R  *  R  K  K  Q  D  *  *  T  A  K  F  A  R  V  Q  V  L  F  S  C  N  F  F  A  L  P  I  F  S  N  R  S  V  W  N  T  Y  S  M  S  N  R  F  R  *  T  L  E  F  G  F  *  I  I  *  M  T  *  K  N  L  D  N  P  F  P  S  V  R  L  V  Y  T  H  A  P  V  Y  Y  F  L  E  P  Q  E  L  C  F  R  L  T  L  G  F  L  L  R  F  V  K  P  T  *  H  V  Q  I  G  T  P  R  R  *  C  S  Q  T  N  I  F  S  R  V  E  C  I  E  R  S  L  *  *  F  F  Y  C  R  I  N  T  L  Q  E  M  C  W  F  W  I  L  K  K  A  I  T  Y  T  T  C  T  L  F  S  S  S  Y  *  L  V  F  *  G  *  I  T  H  </first_frame>
            <second_frame>  L  S  L  I  T  L  S  L  P  F  S  L  F  F  N  N  N  L  F  I  L  M  P  F  Y  L  L  S  F  F  S  N  K  A  *  I  P  S  L  V  N  I  M  F  F  P  I  S  P  I  F  P  F  P  H  K  S  S  S  S  H  F  A  L  C  W  F  *  F  S  P  F  G  Y  S  N  F  S  C  H  Y  Q  C  F  N  C  H  C  S  L  P  L  S  W  P  Q   : G  R  S  S  S  L  *  *  V  C  W  E  W :   W  D  K  V  R  V  L  Q  R  W  *  D  E  E  R  N  R  I  S  R  L  Q  S  L  Q  G  C  R  Y  Y  S  A  A  I  S  S  R  Y  Q  F  L  V  I  V  Q  F  G  I  L  I  A  C  L  T  D  L  D  E  L  S  N  L  D  F  R  S  Y  E  *  H  E  R  T  *  I  I  L  S  H  L  S  G  L  Y  I  P  T  L  L  F  I  I  F  *  N  L  R  N  Y  V  S  D  S  P  L  A  F  S  L  G  L  S  S  Q  P  D  M  F  R  L  E  H  L  D  D  D  V  V  K  L  T  F  F  L  E  *  N  A  S  N  D  H  Y  N  N  F  F  I  A  G  L  I  L  C  K  K  C  A  G  S  G  Y  S  K  R  L  *  H  I  L  L  V  L  F  F  P  L  A  I  D  L  C  S  E  A  K  S  H  I </second_frame>
            <third_frame>   S  R  S  S  L  Y  P  F  H  S  L  S  S  S  T  T  I  C  S  S  L  C  P  F  T  C  C  P  S  F  P  T  K  L  E  F  P  V  L  S  T  S  C  F  S  Q  F  H  Q  F  F  P  F  P  T  N  H  H  H  P  I  L  L  F  V  G  F  D  S  P  P  L  D  T  Q  T  F  L  A  T  I  S  V  L  T  A  I  A  L  S  L  F  L  G  L  K  :  G  D  P  V  P  C  D  R  C  A  G  N   : G  G  T  K  C  V  F  C  N  D  G  K  M  K  K  E  T  G  L  V  D  C  K  V  C  K  G  A  G  T  I  Q  L  Q  F  L  R  A  T  N  F  *  *  S  F  S  L  E  Y  L  *  H  V  *  Q  I  *  M  N  S  R  I  W  I  L  D  H  M  N  D  M  K  E  L  R  *  S  F  P  I  C  Q  A  C  I  Y  P  R  S  C  L  L  F  S  R  T  S  G  T  M  F  P  T  H  P  W  L  S  P  *  V  C  Q  A  N  L  T  C  S  D  W  N  T  S  T  M  M  *  S  N  *  H  F  F  S  S  R  M  H  R  T  I  I  I  I  I  F  L  L  Q  D  *  Y  S  A  R  N  V  L  V  L  D  T  Q  K  G  Y  N  I  Y  Y  L  Y  S  F  F  L  *  L  L  T  C  V  L  R  L  N  H  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46820" stop="47107"/>
                    <exon start="47320" stop="47356"/>
                    <exon start="48754" stop="48878"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRSSLYPFHSLSSSTTICSSLCPFTCCPSFPTKLEFPVLSTSCFSQFHQFFPFPTNHHHPILLFVGFDSPPLDTQTFLATISVLTAIALSLFLGLKGDPVPCDRCAGNGGTKCVFCNDGKMKKETGLVDCKVCKGAGTIQLQFLRATNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="46367" PGL_stop="45828"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46367" e_stop="45828"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="46367" e_stop="45828" e_length="540"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46367" stop="45828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336802" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAGATACTTGTGACAAACAATTTGTCATTCTTAATTACTGGTTAATTACAATAGCAAGAAATTACCAAACTTAAGGTTACACAATTTCAGAGGGAAAAACCTCAAAATCTCTACCAGAAATAATCACATCTATAGAGCCCAAAAAATGGCAGAAAACTGAGTAGTACTCTTCTCCTCAGATAAAAGTCAGAACTGAATCAAGCACAATATATTATGTATTCATTCATTTGTTCAAAATTCTTTGCCAATGTATGGCTCGCTTAACTTACACTAGAACAGAGAGAGAGTTATCGATGGGCCATTTACGCATCACTTGAGTTCAAGTACTGAGATATGGATGCTGCATTAGGATCAAACTTCACATCCATATCAGAATACAAGATGCTTCAGTAACAAAAATCATAAAACCCTGTACAGACTCGAACTGGCTTCTTAACTTCAGGGACAAATGCAATGGTCAATCATAGATTTGAACCATCTCACAATCTTCATTTTCAGCGGCGTTACTAGTTGTAAATTTTAACAGGCTTCTCGTACGT</gDNA_template>
            <first_frame> T  D  T  C  D  K  Q  F  V  I  L  N  Y  W  L  I  T  I  A  R  N  Y  Q  T  *  G  Y  T  I  S  E  G  K  T  S  K  S  L  P  E  I  I  T  S  I  E  P  K  K  W  Q  K  T  E  *  Y  S  S  P  Q  I  K  V  R  T  E  S  S  T  I  Y  Y  V  F  I  H  L  F  K  I  L  C  Q  C  M  A  R  L  T  Y  T  R  T  E  R  E  L  S  M  G  H  L  R  I  T  *  V  Q  V  L  R  Y  G  C  C  I  R  I  K  L  H  I  H  I  R  I  Q  D  A  S  V  T  K  I  I  K  P  C  T  D  S  N  W  L  L  N  F  R  D  K  C  N  G  Q  S  *  I  *  T  I  S  Q  S  S  F  S  A  A  L  L  V  V  N  F  N  R  L  L  V  R </first_frame>
            <second_frame>  Q  I  L  V  T  N  N  L  S  F  L  I  T  G  *  L  Q  *  Q  E  I  T  K  L  K  V  T  Q  F  Q  R  E  K  P  Q  N  L  Y  Q  K  *  S  H  L  *  S  P  K  N  G  R  K  L  S  S  T  L  L  L  R  *  K  S  E  L  N  Q  A  Q  Y  I  M  Y  S  F  I  C  S  K  F  F  A  N  V  W  L  A  *  L  T  L  E  Q  R  E  S  Y  R  W  A  I  Y  A  S  L  E  F  K  Y  *  D  M  D  A  A  L  G  S  N  F  T  S  I  S  E  Y  K  M  L  Q  *  Q  K  S  *  N  P  V  Q  T  R  T  G  F  L  T  S  G  T  N  A  M  V  N  H  R  F  E  P  S  H  N  L  H  F  Q  R  R  Y  *  L  *  I  L  T  G  F  S  Y   </second_frame>
            <third_frame>   R  Y  L  *  Q  T  I  C  H  S  *  L  L  V  N  Y  N  S  K  K  L  P  N  L  R  L  H  N  F  R  G  K  N  L  K  I  S  T  R  N  N  H  I  Y  R  A  Q  K  M  A  E  N  *  V  V  L  F  S  S  D  K  S  Q  N  *  I  K  H  N  I  L  C  I  H  S  F  V  Q  N  S  L  P  M  Y  G  S  L  N  L  H  *  N  R  E  R  V  I  D  G  P  F  T  H  H  L  S  S  S  T  E  I  W  M  L  H  *  D  Q  T  S  H  P  Y  Q  N  T  R  C  F  S  N  K  N  H  K  T  L  Y  R  L  E  L  A  S  *  L  Q  G  Q  M  Q  W  S  I  I  D  L  N  H  L  T  I  F  I  F  S  G  V  T  S  C  K  F  *  Q  A  S  R  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0323E19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="61550" PGL_stop="62894"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61550" e_stop="62894"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="61550" e_stop="62894" e_length="1345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61550" stop="62402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62255" stop="62894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTACTTAATGAACTTGCTGAGGATCTGAAGCAGGATGTTGAAATGGAAGATAAGTCATCAGATATTTTGCATAATCCTATTTCAGAGGACCTAAGTTTGTTGAGGATGAAGCTTGAAGGAGCGCAGGAAAAGCTTCTAAAATCTGCCAATACCATAAGTATGTTTGGTTCATTAGAGAGAGCAATTGTTGAGGTTGATGAACTTGCAGAAGAAATTGAAGGACTCGAAAAGAGCATTGAAGTGAAAAAACAAGGATACACATCCTTCAAGCTTCAGTCGTCACAAATGCTTGAAAAGAAAGTTTTGCTTGATAATAAGCTATCAGCACTAAGATACTCCGTATCAAGCTTTTCCTCATCAGTTGGTTACTTCGAACAACGGGAAGCTCAAACAAGAGCAAGATTGAATGCTTCATCTACTTGTCTCAACCAAAAGAAAGCAAAATTGACTCATCTTCAAGCATCTAAGGTTGAACTCCTGGAAGCACAGATGCAGGCTAAACAGTCAGAATCAGAACTAAGAAACATCCTAGCAGAATCAAAATCAAGATTGGAAGACGAGAATCAAAGGCTGGAAAGTGACAGAGTTCTCTTTGCCATAGATAACATTGATAAACCCGATATCCAATTGCCAGAAAGGAGTTGGCAGTTGAGTGGCAAAGCTACTGAATTACTCAAGTCTGAGGAAGAAAAAACAAAGATACAGAATCAAATGAAGCAGATTAGGGAAAATTTGGGGATAAAGAAGAAGGAAATCGAAGACTTAAACGAAAAAAGACTGAATTCAGAGAAAGATATTGAGGCTACTGAAAAGGAGATAGAGAATATTTCGCAATCTGTAAAGGAGATGGGCAACAAGCTTCAAAGGGTCATCGGGGAGAAGCAGATGATCTTTGAAATGAAAGAGAACGGGAAGAAAGAGTTTGAGAACATGATTCTTGAGTATCACGAGAGTATGTTTGCAGCATCGTTGAAGGAGGAAGAGTTGAAGATTTTGGACGAAGAATTGCAGTTGGAGATGAGTAAAATAGAAGATTTGCAAAGAGAAAAAGCTCTTGCCACAAGCAGAAAAACTCAGTTGCTGAATGCATTATCGTGCCAATCATACTCTTTGTCTGACAAGGTAGAGGAGGATCTACATGACATACGAAGGTCAGTACTAGAGCTGAACTCGTTGCTTGGAAATTGATTGTTTGACTGACAGTTAATTGCCTGTTTAACTGTCAAGTATAAAACATCTTCTCTAAAAGAAACTTCTCTCTGTTGCATTGCTGCTGCCTTAATGTATTGTCGATATAAAATTCTCCTTACGCAAATGGTGTGATGTATTACAAAACCATATTA</gDNA_template>
            <first_frame> L  Y  L  M  N  L  L  R  I  *  S  R  M  L  K  W  K  I  S  H  Q  I  F  C  I  I  L  F  Q  R  T  *  V  C  *  G  *  S  L  K  E  R  R  K  S  F  *  N  L  P  I  P  *  V  C  L  V  H  *  R  E  Q  L  L  R  L  M  N  L  Q  K  K  L  K  D  S  K  R  A  L  K  *  K  N  K  D  T  H  P  S  S  F  S  R  H  K  C  L  K  R  K  F  C  L  I  I  S  Y  Q  H  *  D  T  P  Y  Q  A  F  P  H  Q  L  V  T  S  N  N  G  K  L  K  Q  E  Q  D  *  M  L  H  L  L  V  S  T  K  R  K  Q  N  *  L  I  F  K  H  L  R  L  N  S  W  K  H  R  C  R  L  N  S  Q  N  Q  N  *  E  T  S  *  Q  N  Q  N  Q  D  W  K  T  R  I  K  G  W  K  V  T  E  F  S  L  P  *  I  T  L  I  N  P  I  S  N  C  Q  K  G  V  G  S  *  V  A  K  L  L  N  Y  S  S  L  R  K  K  K  Q  R  Y  R  I  K  *  S  R  L  G  K  I  W  G  *  R  R  R  K  S  K  T  *  T  K  K  D  *  I  Q  R  K  I  L  R  L  L  K  R  R  *  R  I  F  R  N  L  *  R  R  W  A  T  S  F  K  G  S  S  G  R  S  R  *  S  L  K  *  K  R  T  G  R  K  S  L  R  T  *  F  L  S  I  T  R  V  C  L  Q  H  R  *  R  R  K  S  *  R  F  W  T  K  N  C  S  W  R  *  V  K  *  K  I  C  K  E  K  K  L  L  P  Q  A  E  K  L  S  C  *  M  H  Y  R  A  N  H  T  L  C  L  T  R  *  R  R  I  Y  M  T  Y  E  G  Q  Y  *  S  *  T  R  C  L  E  I  D  C  L  T  D  S  *  L  P  V  *  L  S  S  I  K  H  L  L  *  K  K  L  L  S  V  A  L  L  L  P  *  C  I  V  D  I  K  F  S  L  R  K  W  C  D  V  L  Q  N  H  I  </first_frame>
            <second_frame>  C  T  *  *  T  C  *  G  S  E  A  G  C  *  N  G  R  *  V  I  R  Y  F  A  *  S  Y  F  R  G  P  K  F  V  E  D  E  A  *  R  S  A  G  K  A  S  K  I  C  Q  Y  H  K  Y  V  W  F  I  R  E  S  N  C  *  G  *  *  T  C  R  R  N  *  R  T  R  K  E  H  *  S  E  K  T  R  I  H  I  L  Q  A  S  V  V  T  N  A  *  K  E  S  F  A  *  *  *  A  I  S  T  K  I  L  R  I  K  L  F  L  I  S  W  L  L  R  T  T  G  S  S  N  K  S  K  I  E  C  F  I  Y  L  S  Q  P  K  E  S  K  I  D  S  S  S  S  I  *  G  *  T  P  G  S  T  D  A  G  *  T  V  R  I  R  T  K  K  H  P  S  R  I  K  I  K  I  G  R  R  E  S  K  A  G  K  *  Q  S  S  L  C  H  R  *  H  *  *  T  R  Y  P  I  A  R  K  E  L  A  V  E  W  Q  S  Y  *  I  T  Q  V  *  G  R  K  N  K  D  T  E  S  N  E  A  D  *  G  K  F  G  D  K  E  E  G  N  R  R  L  K  R  K  K  T  E  F  R  E  R  Y  *  G  Y  *  K  G  D  R  E  Y  F  A  I  C  K  G  D  G  Q  Q  A  S  K  G  H  R  G  E  A  D  D  L  *  N  E  R  E  R  E  E  R  V  *  E  H  D  S  *  V  S  R  E  Y  V  C  S  I  V  E  G  G  R  V  E  D  F  G  R  R  I  A  V  G  D  E  *  N  R  R  F  A  K  R  K  S  S  C  H  K  Q  K  N  S  V  A  E  C  I  I  V  P  I  I  L  F  V  *  Q  G  R  G  G  S  T  *  H  T  K  V  S  T  R  A  E  L  V  A  W  K  L  I  V  *  L  T  V  N  C  L  F  N  C  Q  V  *  N  I  F  S  K  R  N  F  S  L  L  H  C  C  C  L  N  V  L  S  I  *  N  S  P  Y  A  N  G  V  M  Y  Y  K  T  I  L </second_frame>
            <third_frame>   V  L  N  E  L  A  E  D  L  K  Q  D  V  E  M  E  D  K  S  S  D  I  L  H  N  P  I  S  E  D  L  S  L  L  R  M  K  L  E  G  A  Q  E  K  L  L  K  S  A  N  T  I  S  M  F  G  S  L  E  R  A  I  V  E  V  D  E  L  A  E  E  I  E  G  L  E  K  S  I  E  V  K  K  Q  G  Y  T  S  F  K  L  Q  S  S  Q  M  L  E  K  K  V  L  L  D  N  K  L  S  A  L  R  Y  S  V  S  S  F  S  S  S  V  G  Y  F  E  Q  R  E  A  Q  T  R  A  R  L  N  A  S  S  T  C  L  N  Q  K  K  A  K  L  T  H  L  Q  A  S  K  V  E  L  L  E  A  Q  M  Q  A  K  Q  S  E  S  E  L  R  N  I  L  A  E  S  K  S  R  L  E  D  E  N  Q  R  L  E  S  D  R  V  L  F  A  I  D  N  I  D  K  P  D  I  Q  L  P  E  R  S  W  Q  L  S  G  K  A  T  E  L  L  K  S  E  E  E  K  T  K  I  Q  N  Q  M  K  Q  I  R  E  N  L  G  I  K  K  K  E  I  E  D  L  N  E  K  R  L  N  S  E  K  D  I  E  A  T  E  K  E  I  E  N  I  S  Q  S  V  K  E  M  G  N  K  L  Q  R  V  I  G  E  K  Q  M  I  F  E  M  K  E  N  G  K  K  E  F  E  N  M  I  L  E  Y  H  E  S  M  F  A  A  S  L  K  E  E  E  L  K  I  L  D  E  E  L  Q  L  E  M  S  K  I  E  D  L  Q  R  E  K  A  L  A  T  S  R  K  T  Q  L  L  N  A  L  S  C  Q  S  Y  S  L  S  D  K  V  E  E  D  L  H  D  I  R  R  S  V  L  E  L  N  S  L  L  G  N  *  L  F  D  *  Q  L  I  A  C  L  T  V  K  Y  K  T  S  S  L  K  E  T  S  L  C  C  I  A  A  A  L  M  Y  C  R  Y  K  I  L  L  T  Q  M  V  *  C  I  T  K  P  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61552" stop="62739"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1185</number_coding_nucleotides>
                  <number_encoded_amino_acids>395</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLNELAEDLKQDVEMEDKSSDILHNPISEDLSLLRMKLEGAQEKLLKSANTISMFGSLERAIVEVDELAEEIEGLEKSIEVKKQGYTSFKLQSSQMLEKKVLLDNKLSALRYSVSSFSSSVGYFEQREAQTRARLNASSTCLNQKKAKLTHLQASKVELLEAQMQAKQSESELRNILAESKSRLEDENQRLESDRVLFAIDNIDKPDIQLPERSWQLSGKATELLKSEEEKTKIQNQMKQIRENLGIKKKEIEDLNEKRLNSEKDIEATEKEIENISQSVKEMGNKLQRVIGEKQMIFEMKENGKKEFENMILEYHESMFAASLKEEELKILDEELQLEMSKIEDLQREKALATSRKTQLLNALSCQSYSLSDKVEEDLHDIRRSVLELNSLLGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="63971" PGL_stop="63381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63971" e_stop="63381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63971" e_stop="63381" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63971" stop="63381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318957" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAGTACTATACGGCCAAACACTTATAATTTCCAAAGTTTTCTTTGTTGATTTCAAAGTTCAACCCTTTTCTCACTTAACTATATTCTACTTATGTGTATGGTATCATCAGTGTCTGTTTCCACAGCTGAGAAAGAGTCTTTTTTCTCGAGATTACGAAATATGTTTCATTTCAGAAGGAATGAAGATGAGAAGAAGACAACGACAACAACAACAACGAGAGCTGCTGCTGCTGCAGCAACTACTACTACTAACTGTGTTCCTGTGAGTGACAATGGTGGTAGTAGTAACAAGGGAGAGTTAGAGAGGGTGTTTACGTACTTTGATGAGAATGGAGATGGAAAAGTGTCACCTGCAGAGTTGAGGAAGTGTGTGAAGGCGGTAGGAGGTGAGCTGACGGTGGAGGAGGCGGAGATGGCAGTGAGGCTATCGGATTCTGATGGGGACGGATTATTGGGCATTGAGGATTTTACGAAACTGATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGGGTGAGTTGATGGGAGCATTTGGAATGTATGAAACAGAAGGATACATTACTCCTAAGAGCTTGAAGAACATGTTGAGT</gDNA_template>
            <first_frame> K  S  T  I  R  P  N  T  Y  N  F  Q  S  F  L  C  *  F  Q  S  S  T  L  F  S  L  N  Y  I  L  L  M  C  M  V  S  S  V  S  V  S  T  A  E  K  E  S  F  F  S  R  L  R  N  M  F  H  F  R  R  N  E  D  E  K  K  T  T  T  T  T  T  T  R  A  A  A  A  A  A  T  T  T  T  N  C  V  P  V  S  D  N  G  G  S  S  N  K  G  E  L  E  R  V  F  T  Y  F  D  E  N  G  D  G  K  V  S  P  A  E  L  R  K  C  V  K  A  V  G  G  E  L  T  V  E  E  A  E  M  A  V  R  L  S  D  S  D  G  D  G  L  L  G  I  E  D  F  T  K  L  M  E  G  M  E  E  E  R  N  K  E  G  E  L  M  G  A  F  G  M  Y  E  T  E  G  Y  I  T  P  K  S  L  K  N  M  L  S </first_frame>
            <second_frame>  R  V  L  Y  G  Q  T  L  I  I  S  K  V  F  F  V  D  F  K  V  Q  P  F  S  H  L  T  I  F  Y  L  C  V  W  Y  H  Q  C  L  F  P  Q  L  R  K  S  L  F  S  R  D  Y  E  I  C  F  I  S  E  G  M  K  M  R  R  R  Q  R  Q  Q  Q  Q  R  E  L  L  L  L  Q  Q  L  L  L  L  T  V  F  L  *  V  T  M  V  V  V  V  T  R  E  S  *  R  G  C  L  R  T  L  M  R  M  E  M  E  K  C  H  L  Q  S  *  G  S  V  *  R  R  *  E  V  S  *  R  W  R  R  R  R  W  Q  *  G  Y  R  I  L  M  G  T  D  Y  W  A  L  R  I  L  R  N  *  W  K  E  W  R  K  R  G  I  K  R  V  S  *  W  E  H  L  E  C  M  K  Q  K  D  T  L  L  L  R  A  *  R  T  C  *   </second_frame>
            <third_frame>   E  Y  Y  T  A  K  H  L  *  F  P  K  F  S  L  L  I  S  K  F  N  P  F  L  T  *  L  Y  S  T  Y  V  Y  G  I  I  S  V  C  F  H  S  *  E  R  V  F  F  L  E  I  T  K  Y  V  S  F  Q  K  E  *  R  *  E  E  D  N  D  N  N  N  N  E  S  C  C  C  C  S  N  Y  Y  Y  *  L  C  S  C  E  *  Q  W  W  *  *  *  Q  G  R  V  R  E  G  V  Y  V  L  *  *  E  W  R  W  K  S  V  T  C  R  V  E  E  V  C  E  G  G  R  R  *  A  D  G  G  G  G  G  D  G  S  E  A  I  G  F  *  W  G  R  I  I  G  H  *  G  F  Y  E  T  D  G  R  N  G  G  R  E  E  *  R  G  *  V  D  G  S  I  W  N  V  *  N  R  R  I  H  Y  S  *  E  L  E  E  H  V  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63920" stop="63381"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQSSTLFSLNYILLMCMVSSVSVSTAEKESFFSRLRNMFHFRRNEDEKKTTTTTTTRAAAAAATTTTNCVPVSDNGGSSNKGELERVFTYFDENGDGKVSPAELRKCVKAVGGELTVEEAEMAVRLSDSDGDGLLGIEDFTKLMEGMEEERNKEGELMGAFGMYETEGYITPKSLKNMLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="65000" PGL_stop="68074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65000" e_stop="65314"/>
            <exon e_start="67529" e_stop="68074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65000" e_stop="65314" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65315" i_stop="67528" i_length="2214"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="67529" e_stop="68074" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65000" stop="65314"/>
              <exon start="67529" stop="68074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336675" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTAATTATATACTTGGTTCATTGAATAATTTAACAAATAAAGAAGTAAAACATGCTCCAATTCATGAAATATGGACTTTACAAATATGAAATGAAAAATCTCAATGAATTATTTGATCACAAGAATCCTATTTAGTAATTACACAAATATTTCTCTTTGAACTCTTCTAACATGTCATCATAATTTTAAACTCATCAAAACTAAGAACTCCATCTCCATTGATATCAAATCTCCTTATCATAACCTTGCATTTATCAATGGAGGTTGACTCGCCGAGTCGACTCAACATCATCTTCAAGCTCTTAGGAGTAAT : GTATCCTTCCATTTCATACATTCCAAATGCTCCCATCAACTCACTCTCTTTATTCCTCTCTTCCTCCATTCCTTCCATTAACTTCGTAAAATCCTCAAACCCTAACAACCCGTCCCCATCAGAATCCGATAGCCTCACCACCATCTCCGCCTCCTCCACCGTTATCTCACCTCCTACCGCCTTCATGCATCTCCTTAGCTCCATTGGTGATACCTTTCCATCTCCATTCTCATCAAAGTACGTAAATACCCTCTCTAACTCACCACTATTACTATCACTCACCGATAAACGATCAATAGTACTAGTACTAGTAATAGTTGTTGTTGTTGTTACACTCTCATGTTCCTTCTTAGGAGTATTAGCCTTCTTTAGAAAAAACCTTTTACGTAATCTTGAGAAAAAAGATCCCTTTTCAGCCATGGAAACAGTAACTAACACCATATTAGACATGGTAGATGTAAGTAAGAAAATGAGTAAGTGATATAAGAGTTTTAACTTTGAAACAAAGAAATCTTAGGAAAGTTATATAATTTTTTGTTGTTGAAA</gDNA_template>
            <first_frame> *  *  L  Y  T  W  F  I  E  *  F  N  K  *  R  S  K  T  C  S  N  S  *  N  M  D  F  T  N  M  K  *  K  I  S  M  N  Y  L  I  T  R  I  L  F  S  N  Y  T  N  I  S  L  *  T  L  L  T  C  H  H  N  F  K  L  I  K  T  K  N  S  I  S  I  D  I  K  S  P  Y  H  N  L  A  F  I  N  G  G  *  L  A  E  S  T  Q  H  H  L  Q  A  L  R  S  N  :  V  S  F  H  F  I  H  S  K  C  S  H  Q  L  T  L  F  I  P  L  F  L  H  S  F  H  *  L  R  K  I  L  K  P  *  Q  P  V  P  I  R  I  R  *  P  H  H  H  L  R  L  L  H  R  Y  L  T  S  Y  R  L  H  A  S  P  *  L  H  W  *  Y  L  S  I  S  I  L  I  K  V  R  K  Y  P  L  *  L  T  T  I  T  I  T  H  R  *  T  I  N  S  T  S  T  S  N  S  C  C  C  C  Y  T  L  M  F  L  L  R  S  I  S  L  L  *  K  K  P  F  T  *  S  *  E  K  R  S  L  F  S  H  G  N  S  N  *  H  H  I  R  H  G  R  C  K  *  E  N  E  *  V  I  *  E  F  *  L  *  N  K  E  I  L  G  K  L  Y  N  F  L  L  L  K </first_frame>
            <second_frame>  S  N  Y  I  L  G  S  L  N  N  L  T  N  K  E  V  K  H  A  P  I  H  E  I  W  T  L  Q  I  *  N  E  K  S  Q  *  I  I  *  S  Q  E  S  Y  L  V  I  T  Q  I  F  L  F  E  L  F  *  H  V  I  I  I  L  N  S  S  K  L  R  T  P  S  P  L  I  S  N  L  L  I  I  T  L  H  L  S  M  E  V  D  S  P  S  R  L  N  I  I  F  K  L  L  G  V  M :   Y  P  S  I  S  Y  I  P  N  A  P  I  N  S  L  S  L  F  L  S  S  S  I  P  S  I  N  F  V  K  S  S  N  P  N  N  P  S  P  S  E  S  D  S  L  T  T  I  S  A  S  S  T  V  I  S  P  P  T  A  F  M  H  L  L  S  S  I  G  D  T  F  P  S  P  F  S  S  K  Y  V  N  T  L  S  N  S  P  L  L  L  S  L  T  D  K  R  S  I  V  L  V  L  V  I  V  V  V  V  V  T  L  S  C  S  F  L  G  V  L  A  F  F  R  K  N  L  L  R  N  L  E  K  K  D  P  F  S  A  M  E  T  V  T  N  T  I  L  D  M  V  D  V  S  K  K  M  S  K  *  Y  K  S  F  N  F  E  T  K  K  S  *  E  S  Y  I  I  F  C  C  *   </second_frame>
            <third_frame>   V  I  I  Y  L  V  H  *  I  I  *  Q  I  K  K  *  N  M  L  Q  F  M  K  Y  G  L  Y  K  Y  E  M  K  N  L  N  E  L  F  D  H  K  N  P  I  *  *  L  H  K  Y  F  S  L  N  S  S  N  M  S  S  *  F  *  T  H  Q  N  *  E  L  H  L  H  *  Y  Q  I  S  L  S  *  P  C  I  Y  Q  W  R  L  T  R  R  V  D  S  T  S  S  S  S  S  *  E  *   : C  I  L  P  F  H  T  F  Q  M  L  P  S  T  H  S  L  Y  S  S  L  P  P  F  L  P  L  T  S  *  N  P  Q  T  L  T  T  R  P  H  Q  N  P  I  A  S  P  P  S  P  P  P  P  P  L  S  H  L  L  P  P  S  C  I  S  L  A  P  L  V  I  P  F  H  L  H  S  H  Q  S  T  *  I  P  S  L  T  H  H  Y  Y  Y  H  S  P  I  N  D  Q  *  Y  *  Y  *  *  *  L  L  L  L  L  H  S  H  V  P  S  *  E  Y  *  P  S  L  E  K  T  F  Y  V  I  L  R  K  K  I  P  F  Q  P  W  K  Q  *  L  T  P  Y  *  T  W  *  M  *  V  R  K  *  V  S  D  I  R  V  L  T  L  K  Q  R  N  L  R  K  V  I  *  F  F  V  V  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65172" stop="65314"/>
                    <exon start="67529" stop="68009"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVIIILNSSKLRTPSPLISNLLIITLHLSMEVDSPSRLNIIFKLLGVMYPSISYIPNAPINSLSLFLSSSIPSINFVKSSNPNNPSPSESDSLTTISASSTVISPPTAFMHLLSSIGDTFPSPFSSKYVNTLSNSPLLLSLTDKRSIVLVLVIVVVVVTLSCSFLGVLAFFRKNLLRNLEKKDPFSAMETVTNTILDMVDVSKKMSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="65944" PGL_stop="65163"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65944" e_stop="65163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65944" e_stop="65163" e_length="782"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65944" stop="65163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTATTACATAGTTTTCTTTGTTAATTTCAAGTTCAACTCCATTTACTCATATTCAAACTTTCTTGAATAAAAGAAAAAGTAGTTCAAAGGTATATTTGTTTACTAGCATGTGTATCGCGTCAGTATCTAGTGAATGACCTTAACGATTGTTTTAGAAGTAGAGTTTTACTAGCCTGACGATTCAAAGCAAGGTCGAAATTCATCCCTCTTTTTAAAACTGATTAATTAACGACCCACCATATCCACAGCTGTAAAGGAATCTTTTTTCTCAAGATTACGGAATATGTTTCATCTCAAAAAGAAGAAAGACGAGAAGAAGACGACAACAACAGCAACAACAACAGCCACTACTATTACTAGTAACAATGGAGAGTTAGGGTATTTACGTACTTTGATGAGAATGGAGATGGGAAGGTGTCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGAAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAAGAAAAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATATCAATGGAGATGGAGTTCTTAGTTTTGATGAGTTTAAAATTATGATGACATGTTAGAAGAG</gDNA_template>
            <first_frame> S  L  L  H  S  F  L  C  *  F  Q  V  Q  L  H  L  L  I  F  K  L  S  *  I  K  E  K  V  V  Q  R  Y  I  C  L  L  A  C  V  S  R  Q  Y  L  V  N  D  L  N  D  C  F  R  S  R  V  L  L  A  *  R  F  K  A  R  S  K  F  I  P  L  F  K  T  D  *  L  T  T  H  H  I  H  S  C  K  G  I  F  F  L  K  I  T  E  Y  V  S  S  Q  K  E  E  R  R  E  E  D  D  N  N  S  N  N  N  S  H  Y  Y  Y  *  *  Q  W  R  V  R  V  F  T  Y  F  D  E  N  G  D  G  K  V  S  P  M  E  L  R  R  C  M  K  A  V  G  G  E  I  T  V  K  E  A  E  M  V  V  R  L  S  D  S  D  G  D  G  L  L  G  F  E  D  F  T  K  L  M  E  G  M  E  E  K  R  N  K  E  S  E  L  M  G  A  F  G  M  Y  E  M  E  G  Y  I  T  P  K  S  L  K  M  M  L  S  R  L  G  E  S  T  S  I  D  K  C  K  V  M  I  R  R  F  D  I  N  G  D  G  V  L  S  F  D  E  F  K  I  M  M  T  C  *  K   </first_frame>
            <second_frame>  L  Y  Y  I  V  F  F  V  N  F  K  F  N  S  I  Y  S  Y  S  N  F  L  E  *  K  K  K  *  F  K  G  I  F  V  Y  *  H  V  Y  R  V  S  I  *  *  M  T  L  T  I  V  L  E  V  E  F  Y  *  P  D  D  S  K  Q  G  R  N  S  S  L  F  L  K  L  I  N  *  R  P  T  I  S  T  A  V  K  E  S  F  F  S  R  L  R  N  M  F  H  L  K  K  K  K  D  E  K  K  T  T  T  T  A  T  T  T  A  T  T  I  T  S  N  N  G  E  L  G  Y  L  R  T  L  M  R  M  E  M  G  R  C  H  Q  W  S  *  G  D  A  *  R  R  *  E  V  R  *  R  *  R  R  R  R  W  W  *  G  Y  R  I  L  M  G  T  G  C  *  G  L  R  I  L  R  S  *  W  K  E  W  K  K  R  G  I  K  R  V  S  *  W  E  H  L  E  C  M  K  W  K  D  T  L  L  L  R  A  *  R  *  C  *  V  D  S  A  S  Q  P  P  L  I  N  A  R  L  *  *  G  D  L  I  S  M  E  M  E  F  L  V  L  M  S  L  K  L  *  *  H  V  R  R  </second_frame>
            <third_frame>   F  I  T  *  F  S  L  L  I  S  S  S  T  P  F  T  H  I  Q  T  F  L  N  K  R  K  S  S  S  K  V  Y  L  F  T  S  M  C  I  A  S  V  S  S  E  *  P  *  R  L  F  *  K  *  S  F  T  S  L  T  I  Q  S  K  V  E  I  H  P  S  F  *  N  *  L  I  N  D  P  P  Y  P  Q  L  *  R  N  L  F  S  Q  D  Y  G  I  C  F  I  S  K  R  R  K  T  R  R  R  R  Q  Q  Q  Q  Q  Q  Q  P  L  L  L  L  V  T  M  E  S  *  G  I  Y  V  L  *  *  E  W  R  W  E  G  V  T  N  G  A  K  E  M  H  E  G  G  R  R  *  D  N  G  E  G  G  G  D  G  G  E  A  I  G  F  *  W  G  R  V  V  R  V  *  G  F  Y  E  V  N  G  R  N  G  R  K  E  E  *  R  E  *  V  D  G  S  I  W  N  V  *  N  G  R  I  H  Y  S  *  E  L  E  D  D  V  E  S  T  R  R  V  N  L  H  *  *  M  Q  G  Y  D  K  E  I  *  Y  Q  W  R  W  S  S  *  F  *  *  V  *  N  Y  D  D  M  L  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65578" stop="65168"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QWRVRVFTYFDENGDGKVSPMELRRCMKAVGGEITVKEAEMVVRLSDSDGDGLLGFEDFTKLMEGMEEKRNKESELMGAFGMYEMEGYITPKSLKMMLSRLGESTSIDKCKVMIRRFDINGDGVLSFDEFKIMMTC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="68069" PGL_stop="67230"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68069" e_stop="67230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="68069" e_stop="67230" e_length="840"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68069" stop="67230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318958" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAACAAAAAATTATATAACTTTCCTAAGATTTCTTTGTTTCAAAGTTAAAACTCTTATATCACTTACTCATTTTCTTACTTACATCTACCATGTCTAATATGGTGTTAGTTACTGTTTCCATGGCTGAAAAGGGATCTTTTTTCTCAAGATTACGTAAAAGGTTTTTTCTAAAGAAGGCTAATACTCCTAAGAAGGAACATGAGAGTGTAACAACAACAACAACTATTACTAGTACTAGTACTATTGATCGTTTATCGGTGAGTGATAGTAATAGTGGTGAGTTAGAGAGGGTATTTACGTACTTTGATGAGAATGGAGATGGAAAGGTATCACCAATGGAGCTAAGGAGATGCATGAAGGCGGTAGGAGGTGAGATAACGGTGGAGGAGGCGGAGATGGTGGTGAGGCTATCGGATTCTGATGGGGACGGGTTGTTAGGGTTTGAGGATTTTACGAAGTTAATGGAAGGAATGGAGGAAGAGAGGAATAAAGAGAGTGAGTTGATGGGAGCATTTGGAATGTATGAAATGGAAGGATACATTACTCCTAAGAGCTTGAAGATGATGTTGAGTCGACTCGGCGAGTCAACCTCCATTGATAAATGCAAGGTTATGATAAGGAGATTTGATACTAATGGAGATGGAGTTCTTAGCTTTGATGAGTTCAAAGTTATGATGACAAGTTAGAAGAGATATTTGTGTACATAATTCTTTTGGCCTATTGGCCTTGTTATTGTTATTTTATTTCTTCTTGTTTCTAGTAATTATATAAATGGTTTTTGGTTGAGATTTATACATTCATAGATTCAAATTTGTGAAACAATTCCTTGGTTTTTACT</gDNA_template>
            <first_frame> T  T  K  N  Y  I  T  F  L  R  F  L  C  F  K  V  K  T  L  I  S  L  T  H  F  L  T  Y  I  Y  H  V  *  Y  G  V  S  Y  C  F  H  G  *  K  G  I  F  F  L  K  I  T  *  K  V  F  S  K  E  G  *  Y  S  *  E  G  T  *  E  C  N  N  N  N  N  Y  Y  *  Y  *  Y  Y  *  S  F  I  G  E  *  *  *  *  W  *  V  R  E  G  I  Y  V  L  *  *  E  W  R  W  K  G  I  T  N  G  A  K  E  M  H  E  G  G  R  R  *  D  N  G  G  G  G  G  D  G  G  E  A  I  G  F  *  W  G  R  V  V  R  V  *  G  F  Y  E  V  N  G  R  N  G  G  R  E  E  *  R  E  *  V  D  G  S  I  W  N  V  *  N  G  R  I  H  Y  S  *  E  L  E  D  D  V  E  S  T  R  R  V  N  L  H  *  *  M  Q  G  Y  D  K  E  I  *  Y  *  W  R  W  S  S  *  L  *  *  V  Q  S  Y  D  D  K  L  E  E  I  F  V  Y  I  I  L  L  A  Y  W  P  C  Y  C  Y  F  I  S  S  C  F  *  *  L  Y  K  W  F  L  V  E  I  Y  T  F  I  D  S  N  L  *  N  N  S  L  V  F  T </first_frame>
            <second_frame>  Q  Q  K  I  I  *  L  S  *  D  F  F  V  S  K  L  K  L  L  Y  H  L  L  I  F  L  L  T  S  T  M  S  N  M  V  L  V  T  V  S  M  A  E  K  G  S  F  F  S  R  L  R  K  R  F  F  L  K  K  A  N  T  P  K  K  E  H  E  S  V  T  T  T  T  T  I  T  S  T  S  T  I  D  R  L  S  V  S  D  S  N  S  G  E  L  E  R  V  F  T  Y  F  D  E  N  G  D  G  K  V  S  P  M  E  L  R  R  C  M  K  A  V  G  G  E  I  T  V  E  E  A  E  M  V  V  R  L  S  D  S  D  G  D  G  L  L  G  F  E  D  F  T  K  L  M  E  G  M  E  E  E  R  N  K  E  S  E  L  M  G  A  F  G  M  Y  E  M  E  G  Y  I  T  P  K  S  L  K  M  M  L  S  R  L  G  E  S  T  S  I  D  K  C  K  V  M  I  R  R  F  D  T  N  G  D  G  V  L  S  F  D  E  F  K  V  M  M  T  S  *  K  R  Y  L  C  T  *  F  F  W  P  I  G  L  V  I  V  I  L  F  L  L  V  S  S  N  Y  I  N  G  F  W  L  R  F  I  H  S  *  I  Q  I  C  E  T  I  P  W  F  L   </second_frame>
            <third_frame>   N  K  K  L  Y  N  F  P  K  I  S  L  F  Q  S  *  N  S  Y  I  T  Y  S  F  S  Y  L  H  L  P  C  L  I  W  C  *  L  L  F  P  W  L  K  R  D  L  F  S  Q  D  Y  V  K  G  F  F  *  R  R  L  I  L  L  R  R  N  M  R  V  *  Q  Q  Q  Q  L  L  L  V  L  V  L  L  I  V  Y  R  *  V  I  V  I  V  V  S  *  R  G  Y  L  R  T  L  M  R  M  E  M  E  R  Y  H  Q  W  S  *  G  D  A  *  R  R  *  E  V  R  *  R  W  R  R  R  R  W  W  *  G  Y  R  I  L  M  G  T  G  C  *  G  L  R  I  L  R  S  *  W  K  E  W  R  K  R  G  I  K  R  V  S  *  W  E  H  L  E  C  M  K  W  K  D  T  L  L  L  R  A  *  R  *  C  *  V  D  S  A  S  Q  P  P  L  I  N  A  R  L  *  *  G  D  L  I  L  M  E  M  E  F  L  A  L  M  S  S  K  L  *  *  Q  V  R  R  D  I  C  V  H  N  S  F  G  L  L  A  L  L  L  L  F  Y  F  F  L  F  L  V  I  I  *  M  V  F  G  *  D  L  Y  I  H  R  F  K  F  V  K  Q  F  L  G  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68041" stop="67382"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFFVSKLKLLYHLLIFLLTSTMSNMVLVTVSMAEKGSFFSRLRKRFFLKKANTPKKEHESVTTTTTITSTSTIDRLSVSDSNSGELERVFTYFDENGDGKVSPMELRRCMKAVGGEITVEEAEMVVRLSDSDGDGLLGFEDFTKLMEGMEEERNKESELMGAFGMYEMEGYITPKSLKMMLSRLGESTSIDKCKVMIRRFDTNGDGVLSFDEFKVMMTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="72402" PGL_stop="71755"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72402" e_stop="71755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72402" e_stop="71755" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72402" stop="71755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332669" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGCTTCCAACTGCATTGACAAAGCTGCTTGATGAAAGTTCTGAGTTGCTTGAAGACATCATTGGAGGTAAATCTCTACAGGCTTGTAGAAGCTCGGAAACTCTCAGAGGTAACGTTGTAGAAGATGAGAATCCAATTGAAGCATTTAAGAAACGCCTAATAGATGCTGTGGAGAGCGACTTTTCTACTGGATTTGCTGATACAGAAAAGGATAGGATTGATAAATGTAAGAAAACATGGCAAAAATTCTTAAAAAGGATCTGGGCTTTAGGGCCTAGACAGGTCGGTCCCAACATTCTCCTCACTCCGGATGTGAAAGGAAAGAGCGCCGATGTTTCTATTCTTATAAAGGGTTCCCCTTATGTATCGAAAAAATTGGGATTTACGGATGACAATGATGATAGCAGCGCATCACCAGAATCATCAACCAGTTTGGATCCGACCCTTTTACGAGAAGCTGAGAATCTTGAAAGCAGTATATTATCTGGATTTCAGTTAGCTACAGCATCTGGCCCTTTATGTGATGAGCCAATGTGGGGTTTGGCATTTGTTATTGAAGCTTCCATATCTCCATTAGCTACGCAACCAAATGATAGTGAGACCGGCCCTATTCCACAGCCTGAACAATATGGGCTCTTACCTGGACA</gDNA_template>
            <first_frame> E  A  S  N  C  I  D  K  A  A  *  *  K  F  *  V  A  *  R  H  H  W  R  *  I  S  T  G  L  *  K  L  G  N  S  Q  R  *  R  C  R  R  *  E  S  N  *  S  I  *  E  T  P  N  R  C  C  G  E  R  L  F  Y  W  I  C  *  Y  R  K  G  *  D  *  *  M  *  E  N  M  A  K  I  L  K  K  D  L  G  F  R  A  *  T  G  R  S  Q  H  S  P  H  S  G  C  E  R  K  E  R  R  C  F  Y  S  Y  K  G  F  P  L  C  I  E  K  I  G  I  Y  G  *  Q  *  *  *  Q  R  I  T  R  I  I  N  Q  F  G  S  D  P  F  T  R  S  *  E  S  *  K  Q  Y  I  I  W  I  S  V  S  Y  S  I  W  P  F  M  *  *  A  N  V  G  F  G  I  C  Y  *  S  F  H  I  S  I  S  Y  A  T  K  *  *  *  D  R  P  Y  S  T  A  *  T  I  W  A  L  T  W  T </first_frame>
            <second_frame>  K  L  P  T  A  L  T  K  L  L  D  E  S  S  E  L  L  E  D  I  I  G  G  K  S  L  Q  A  C  R  S  S  E  T  L  R  G  N  V  V  E  D  E  N  P  I  E  A  F  K  K  R  L  I  D  A  V  E  S  D  F  S  T  G  F  A  D  T  E  K  D  R  I  D  K  C  K  K  T  W  Q  K  F  L  K  R  I  W  A  L  G  P  R  Q  V  G  P  N  I  L  L  T  P  D  V  K  G  K  S  A  D  V  S  I  L  I  K  G  S  P  Y  V  S  K  K  L  G  F  T  D  D  N  D  D  S  S  A  S  P  E  S  S  T  S  L  D  P  T  L  L  R  E  A  E  N  L  E  S  S  I  L  S  G  F  Q  L  A  T  A  S  G  P  L  C  D  E  P  M  W  G  L  A  F  V  I  E  A  S  I  S  P  L  A  T  Q  P  N  D  S  E  T  G  P  I  P  Q  P  E  Q  Y  G  L  L  P  G   </second_frame>
            <third_frame>   S  F  Q  L  H  *  Q  S  C  L  M  K  V  L  S  C  L  K  T  S  L  E  V  N  L  Y  R  L  V  E  A  R  K  L  S  E  V  T  L  *  K  M  R  I  Q  L  K  H  L  R  N  A  *  *  M  L  W  R  A  T  F  L  L  D  L  L  I  Q  K  R  I  G  L  I  N  V  R  K  H  G  K  N  S  *  K  G  S  G  L  *  G  L  D  R  S  V  P  T  F  S  S  L  R  M  *  K  E  R  A  P  M  F  L  F  L  *  R  V  P  L  M  Y  R  K  N  W  D  L  R  M  T  M  M  I  A  A  H  H  Q  N  H  Q  P  V  W  I  R  P  F  Y  E  K  L  R  I  L  K  A  V  Y  Y  L  D  F  S  *  L  Q  H  L  A  L  Y  V  M  S  Q  C  G  V  W  H  L  L  L  K  L  P  Y  L  H  *  L  R  N  Q  M  I  V  R  P  A  L  F  H  S  L  N  N  M  G  S  Y  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72401" stop="71757"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLPTALTKLLDESSELLEDIIGGKSLQACRSSETLRGNVVEDENPIEAFKKRLIDAVESDFSTGFADTEKDRIDKCKKTWQKFLKRIWALGPRQVGPNILLTPDVKGKSADVSILIKGSPYVSKKLGFTDDNDDSSASPESSTSLDPTLLREAENLESSILSGFQLATASGPLCDEPMWGLAFVIEASISPLATQPNDSETGPIPQPEQYGLLPG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="77655" PGL_stop="76969"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77655" e_stop="76969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="77655" e_stop="76969" e_length="687"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77655" stop="76969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTTCTCTCCCACTTGTTTACGAAGAGCATTTTTAGTGTGAATTTGGTAATGATCGGCCGGCGATTTTTTTGTATGTGATTCGTCGGAGTTTAACGGCGATGACTATGCAGAATATCGTGGTGGAGTCATCGGCGGTAAATGAGAGAAAAGAACTATCGAGAACGACGACGGCGATTACGACGATTACGACGAGGGAGGATGAGAAACGAGGCGGAGGCGGAAATCAGCATAAAAGGATAGGAGAAGTGGCGGGAGGGACGGCGGCGGAGTGTGCGATGGTATGTTGTTGTTGTCCGTGCACGGTGCTGCACTTTCTCCTACTTGCTCTGTATAAAGTTCCGACGGGACTTTGCCGGAAAGCATGGAGGAGTAAGAAGCAGAAGAAGGTTTTGAAGAAGAAAAACAGCACTAATAATTCTCCTGGTGTTTACTACACCGACGATGATAAGGATTATTTCGATGGCGGCGGTAACGTAAACAGAGGATCATCGGAAACAGCCGAATTTGAAACGGAGATGTGGCACCGATTTTACGATGGCGCTGGATTTGGAAGGAGCTCATCTCAAAAGGAATTAGAAGAAGAACAACAACAGCAACATCAATGATTCTCCCGGTGATTACTATATCTACATCGATAAGGATTGTTCCAATGTAACCGGCGACGGCGAGGATCATCGGAAATGG</gDNA_template>
            <first_frame> Q  F  L  S  H  L  F  T  K  S  I  F  S  V  N  L  V  M  I  G  R  R  F  F  C  M  *  F  V  G  V  *  R  R  *  L  C  R  I  S  W  W  S  H  R  R  *  M  R  E  K  N  Y  R  E  R  R  R  R  L  R  R  L  R  R  G  R  M  R  N  E  A  E  A  E  I  S  I  K  G  *  E  K  W  R  E  G  R  R  R  S  V  R  W  Y  V  V  V  V  R  A  R  C  C  T  F  S  Y  L  L  C  I  K  F  R  R  D  F  A  G  K  H  G  G  V  R  S  R  R  R  F  *  R  R  K  T  A  L  I  I  L  L  V  F  T  T  P  T  M  I  R  I  I  S  M  A  A  V  T  *  T  E  D  H  R  K  Q  P  N  L  K  R  R  C  G  T  D  F  T  M  A  L  D  L  E  G  A  H  L  K  R  N  *  K  K  N  N  N  S  N  I  N  D  S  P  G  D  Y  Y  I  Y  I  D  K  D  C  S  N  V  T  G  D  G  E  D  H  R  K  W </first_frame>
            <second_frame>  N  F  S  P  T  C  L  R  R  A  F  L  V  *  I  W  *  *  S  A  G  D  F  F  V  C  D  S  S  E  F  N  G  D  D  Y  A  E  Y  R  G  G  V  I  G  G  K  *  E  K  R  T  I  E  N  D  D  G  D  Y  D  D  Y  D  E  G  G  *  E  T  R  R  R  R  K  S  A  *  K  D  R  R  S  G  G  R  D  G  G  G  V  C  D  G  M  L  L  L  S  V  H  G  A  A  L  S  P  T  C  S  V  *  S  S  D  G  T  L  P  E  S  M  E  E  *  E  A  E  E  G  F  E  E  E  K  Q  H  *  *  F  S  W  C  L  L  H  R  R  *  *  G  L  F  R  W  R  R  *  R  K  Q  R  I  I  G  N  S  R  I  *  N  G  D  V  A  P  I  L  R  W  R  W  I  W  K  E  L  I  S  K  G  I  R  R  R  T  T  T  A  T  S  M  I  L  P  V  I  T  I  S  T  S  I  R  I  V  P  M  *  P  A  T  A  R  I  I  G  N   </second_frame>
            <third_frame>   I  S  L  P  L  V  Y  E  E  H  F  *  C  E  F  G  N  D  R  P  A  I  F  L  Y  V  I  R  R  S  L  T  A  M  T  M  Q  N  I  V  V  E  S  S  A  V  N  E  R  K  E  L  S  R  T  T  T  A  I  T  T  I  T  T  R  E  D  E  K  R  G  G  G  G  N  Q  H  K  R  I  G  E  V  A  G  G  T  A  A  E  C  A  M  V  C  C  C  C  P  C  T  V  L  H  F  L  L  L  A  L  Y  K  V  P  T  G  L  C  R  K  A  W  R  S  K  K  Q  K  K  V  L  K  K  K  N  S  T  N  N  S  P  G  V  Y  Y  T  D  D  D  K  D  Y  F  D  G  G  G  N  V  N  R  G  S  S  E  T  A  E  F  E  T  E  M  W  H  R  F  Y  D  G  A  G  F  G  R  S  S  S  Q  K  E  L  E  E  E  Q  Q  Q  Q  H  Q  *  F  S  R  *  L  L  Y  L  H  R  *  G  L  F  Q  C  N  R  R  R  R  G  S  S  E  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77617" stop="77048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CEFGNDRPAIFLYVIRRSLTAMTMQNIVVESSAVNERKELSRTTTAITTITTREDEKRGGGGNQHKRIGEVAGGTAAECAMVCCCCPCTVLHFLLLALYKVPTGLCRKAWRSKKQKKVLKKKNSTNNSPGVYYTDDDKDYFDGGGNVNRGSSETAEFETEMWHRFYDGAGFGRSSSQKELEEEQQQQHQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="82124" PGL_stop="78845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82124" e_stop="81926"/>
            <exon e_start="79901" e_stop="79799"/>
            <exon e_start="79235" e_stop="78845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="0.995"/>
          <exon-intron don_prob="0.290" acc_prob="0.696" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="82124" e_stop="81926" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="81925" i_stop="79902" i_length="2024"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79901" e_stop="79799" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.290" acc_prob="0.696">
            <gDNA_intron_boundary i_start="79798" i_stop="79236" i_length="563"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="79235" e_stop="78845" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82124" stop="81926"/>
              <exon start="79901" stop="79799"/>
              <exon start="79235" stop="78845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGCCATGGCTGAAGAAGACTCTGTATCCAAGTCTTTCTTAAGGAGACACTGGGAAGGTTACAAGGAGTTTTGGGGTGAGAGATTCTCCTTTTTGGATAACTATTCAAGGTTCATCAAACGCGATAAGCCATTACCGTCGTGGTCTGAAGCTGATGTGGAGGAGTTCATTGCTTCTGAGCCAGTTCATGGACCAACA : CTGAAGACTGCTAGGGAAGCAGCTAAGTTTGGTGCTGTAGGAGGCCTACTTGGAGCTGTTTCAACTGCAGGAGTTACATGGAAGTACTCAAGGAGTCTGCATG : GTACTGCATTGTCCCTTGGAGCTGGAGCTGTCTTTGGCTGGACATTCGGACAGGAAGTCGCCAACCACCGGCTGCAGCTATACAGGATGGATACAATGGCTTCACAGGTGAAGTTCATGGAATGGTGGCAGAACAAAGTCGAACGACAGTCTTAATTTTCTCTCTTCCTGTACGAGATTTGAAGAAACAAAAACTCTGGATTTGCTCGTTAGCGCGATAACACAGTCATTTTGTTATTGGCAATAAAAATTTGTTGACAGTGTTCAACTTGTATCTGGTGAATTGAAATTTTTGTGCTCTAGGTTGTGCTTTTGACTATGAGATTTTGATGTTTGTTTGCCTACAAAATGGCTATAATGAAGTGCAATTTATGGCTTTGAAGTTTAAAGAT</gDNA_template>
            <first_frame> *  S  H  G  *  R  R  L  C  I  Q  V  F  L  K  E  T  L  G  R  L  Q  G  V  L  G  *  E  I  L  L  F  G  *  L  F  K  V  H  Q  T  R  *  A  I  T  V  V  V  *  S  *  C  G  G  V  H  C  F  *  A  S  S  W  T  N   : T  E  D  C  *  G  S  S  *  V  W  C  C  R  R  P  T  W  S  C  F  N  C  R  S  Y  M  E  V  L  K  E  S  A  W :   Y  C  I  V  P  W  S  W  S  C  L  W  L  D  I  R  T  G  S  R  Q  P  P  A  A  A  I  Q  D  G  Y  N  G  F  T  G  E  V  H  G  M  V  A  E  Q  S  R  T  T  V  L  I  F  S  L  P  V  R  D  L  K  K  Q  K  L  W  I  C  S  L  A  R  *  H  S  H  F  V  I  G  N  K  N  L  L  T  V  F  N  L  Y  L  V  N  *  N  F  C  A  L  G  C  A  F  D  Y  E  I  L  M  F  V  C  L  Q  N  G  Y  N  E  V  Q  F  M  A  L  K  F  K  D </first_frame>
            <second_frame>  K  A  M  A  E  E  D  S  V  S  K  S  F  L  R  R  H  W  E  G  Y  K  E  F  W  G  E  R  F  S  F  L  D  N  Y  S  R  F  I  K  R  D  K  P  L  P  S  W  S  E  A  D  V  E  E  F  I  A  S  E  P  V  H  G  P  T  :  L  K  T  A  R  E  A  A  K  F  G  A  V  G  G  L  L  G  A  V  S  T  A  G  V  T  W  K  Y  S  R  S  L  H   : G  T  A  L  S  L  G  A  G  A  V  F  G  W  T  F  G  Q  E  V  A  N  H  R  L  Q  L  Y  R  M  D  T  M  A  S  Q  V  K  F  M  E  W  W  Q  N  K  V  E  R  Q  S  *  F  S  L  F  L  Y  E  I  *  R  N  K  N  S  G  F  A  R  *  R  D  N  T  V  I  L  L  L  A  I  K  I  C  *  Q  C  S  T  C  I  W  *  I  E  I  F  V  L  *  V  V  L  L  T  M  R  F  *  C  L  F  A  Y  K  M  A  I  M  K  C  N  L  W  L  *  S  L  K   </second_frame>
            <third_frame>   K  P  W  L  K  K  T  L  Y  P  S  L  S  *  G  D  T  G  K  V  T  R  S  F  G  V  R  D  S  P  F  W  I  T  I  Q  G  S  S  N  A  I  S  H  Y  R  R  G  L  K  L  M  W  R  S  S  L  L  L  S  Q  F  M  D  Q  H :   *  R  L  L  G  K  Q  L  S  L  V  L  *  E  A  Y  L  E  L  F  Q  L  Q  E  L  H  G  S  T  Q  G  V  C  M  :  V  L  H  C  P  L  E  L  E  L  S  L  A  G  H  S  D  R  K  S  P  T  T  G  C  S  Y  T  G  W  I  Q  W  L  H  R  *  S  S  W  N  G  G  R  T  K  S  N  D  S  L  N  F  L  S  S  C  T  R  F  E  E  T  K  T  L  D  L  L  V  S  A  I  T  Q  S  F  C  Y  W  Q  *  K  F  V  D  S  V  Q  L  V  S  G  E  L  K  F  L  C  S  R  L  C  F  *  L  *  D  F  D  V  C  L  P  T  K  W  L  *  *  S  A  I  Y  G  F  E  V  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82123" stop="81926"/>
                    <exon start="79901" stop="79799"/>
                    <exon start="79235" stop="79081"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAMAEEDSVSKSFLRRHWEGYKEFWGERFSFLDNYSRFIKRDKPLPSWSEADVEEFIASEPVHGPTLKTAREAAKFGAVGGLLGAVSTAGVTWKYSRSLHGTALSLGAGAVFGWTFGQEVANHRLQLYRMDTMASQVKFMEWWQNKVERQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="87052" PGL_stop="82643"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87052" e_stop="86550"/>
            <exon e_start="85417" e_stop="85142"/>
            <exon e_start="84067" e_stop="83900"/>
            <exon e_start="83264" e_stop="82643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.938" acc_prob="0.985" e_score="0.996"/>
          <exon-intron don_prob="0.966" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="87052" e_stop="86550" e_length="503"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="86549" i_stop="85418" i_length="1132"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="85417" e_stop="85142" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.938" acc_prob="0.985">
            <gDNA_intron_boundary i_start="85141" i_stop="84068" i_length="1074"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84067" e_stop="83900" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="1.000">
            <gDNA_intron_boundary i_start="83899" i_stop="83265" i_length="635"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="83264" e_stop="82643" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87052" stop="86550"/>
              <exon start="85417" stop="85142"/>
              <exon start="84067" stop="83900"/>
              <exon start="83264" stop="82643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316198" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCACTCTATTATTTTTTCAAGAAAATTTTTCATTGTACCTTGTTAGATAGCCAACATTCTTTCACAATTCTTCCTTTTGGGGTATACTATAATTCCAAAATTTTCAACCCCATTTCATGATTTTCCCTTTACTCAAACCCCATTATCATAAAGTTTCAATTTTTATCAAGAAAATGAGAGCAGTTTCAGTATTTGGTGGTGTGTTCCTTGTGTTGGCAGTGTATTGTGGGTTGGACCCTTTTAAGCATAGTGCAATTTCTGAGTTCCCAAATTTTGAGTCTTTTAAGGTTGAGATGCCAGCTTGGTCTGAAATCCCAGTTGAAAAAGATTCACAAAATTTGCTTCAAAAATCTGAAGTTAAGTTCTTGGATCAAATTCAGGGGCCAGAAAGTATTGTTTTTGATCCTCAGGGTAGAGGACCTTATACAGGGATAGCTGATGGAAGAGTTGTGTTTTGGGATGGTGAAAAATGGAATGATTTTGCTTATACTTCAGCTAATAG : GTCAGGCTTGTGTGATCCAAAACCGTCAGCGTTGAGCTATAGGAAGTACGAGCACATCTGTGGTAGGCCTTTGGGGTTACGATTTGACAAAAGAACAGGTGACTTATATATTGCCGATGCATATTTGGGGTTAATGAAGGTAGGCCCTGAAGGTGGATTAGCAGAATCTTTGACAACTGAGGCTGAGGGGGTACCTATAGGATTTGCAAATGACTTGGATGTTGATGATGAAGGGAATGTTTATTTTACGGATAGCAGCACAAAGTACCAACGCAG : GAATTTTATACAGCTGGTTTTCTCAGCAGAAGATAGTGGGAAGGTTCTCAAATACAATCCTAGGACGAAAGAAACCACTATTCTTATTCGCAACCTTCAATTTCCAAATGGTCTGTCACTAAGCAAGGATGGTTCCTTCTTTATATTTTGCGAAGGTTCCAAGGGCAG : GTTACGAAAGTACTGGCTGAAAGGTGAGAAAGCCGGTACATCAGAGGTAATAGCAATCCTCCCGGGATATCCAGACAACGTACGAGCAAATGAAAGAAATGAGTTTTGGGTAGCAATCCACTGTCGTCGTACCATCTACAGTTACATAAATGGCATATACCCTCGACTCCGTCAATTCTTGCTGAAGCTTCCCATCTCTGCAAAGCTCCAATACCTCATTCACATTGGTGGCAGGTTCACTGCAGTTGTCGTGAAGTACAGCCCCGAGGGCAAGCTGTTGCAGATATTGGAAGATCGACAAGGGAAAGTCGTTAGAGCTGTCAGCGAGGTAGAGGAGAGGGATGGGAAGCTTTGGATGGGAAGTGTTCTCATGTCTTTCATTTCAGTTTATCAGCTAGAATGAACTCTTGAGCTTTTGCTTTGGCTTTGGCTCATCATCAATTACTTCTCCATTGGAAAATAACTCATTTTACTTCAAAGAGTTGTTTGTAGTATTTATTTAAATAAAGGTTTGATAGTGGCGTACACAGAACTTGTTTGTAAGCTAAGTCATCATTTAAAGAAGTGTTTGATAATTCAGAGATGAAAAATGAAACACGATATATATATCGCTATAACATCA</gDNA_template>
            <first_frame> T  T  L  L  F  F  Q  E  N  F  S  L  Y  L  V  R  *  P  T  F  F  H  N  S  S  F  W  G  I  L  *  F  Q  N  F  Q  P  H  F  M  I  F  P  L  L  K  P  H  Y  H  K  V  S  I  F  I  K  K  M  R  A  V  S  V  F  G  G  V  F  L  V  L  A  V  Y  C  G  L  D  P  F  K  H  S  A  I  S  E  F  P  N  F  E  S  F  K  V  E  M  P  A  W  S  E  I  P  V  E  K  D  S  Q  N  L  L  Q  K  S  E  V  K  F  L  D  Q  I  Q  G  P  E  S  I  V  F  D  P  Q  G  R  G  P  Y  T  G  I  A  D  G  R  V  V  F  W  D  G  E  K  W  N  D  F  A  Y  T  S  A  N  R :   S  G  L  C  D  P  K  P  S  A  L  S  Y  R  K  Y  E  H  I  C  G  R  P  L  G  L  R  F  D  K  R  T  G  D  L  Y  I  A  D  A  Y  L  G  L  M  K  V  G  P  E  G  G  L  A  E  S  L  T  T  E  A  E  G  V  P  I  G  F  A  N  D  L  D  V  D  D  E  G  N  V  Y  F  T  D  S  S  T  K  Y  Q  R  R :   N  F  I  Q  L  V  F  S  A  E  D  S  G  K  V  L  K  Y  N  P  R  T  K  E  T  T  I  L  I  R  N  L  Q  F  P  N  G  L  S  L  S  K  D  G  S  F  F  I  F  C  E  G  S  K  G  R :   L  R  K  Y  W  L  K  G  E  K  A  G  T  S  E  V  I  A  I  L  P  G  Y  P  D  N  V  R  A  N  E  R  N  E  F  W  V  A  I  H  C  R  R  T  I  Y  S  Y  I  N  G  I  Y  P  R  L  R  Q  F  L  L  K  L  P  I  S  A  K  L  Q  Y  L  I  H  I  G  G  R  F  T  A  V  V  V  K  Y  S  P  E  G  K  L  L  Q  I  L  E  D  R  Q  G  K  V  V  R  A  V  S  E  V  E  E  R  D  G  K  L  W  M  G  S  V  L  M  S  F  I  S  V  Y  Q  L  E  *  T  L  E  L  L  L  W  L  W  L  I  I  N  Y  F  S  I  G  K  *  L  I  L  L  Q  R  V  V  C  S  I  Y  L  N  K  G  L  I  V  A  Y  T  E  L  V  C  K  L  S  H  H  L  K  K  C  L  I  I  Q  R  *  K  M  K  H  D  I  Y  I  A  I  T  S </first_frame>
            <second_frame>  P  L  Y  Y  F  F  K  K  I  F  H  C  T  L  L  D  S  Q  H  S  F  T  I  L  P  F  G  V  Y  Y  N  S  K  I  F  N  P  I  S  *  F  S  L  Y  S  N  P  I  I  I  K  F  Q  F  L  S  R  K  *  E  Q  F  Q  Y  L  V  V  C  S  L  C  W  Q  C  I  V  G  W  T  L  L  S  I  V  Q  F  L  S  S  Q  I  L  S  L  L  R  L  R  C  Q  L  G  L  K  S  Q  L  K  K  I  H  K  I  C  F  K  N  L  K  L  S  S  W  I  K  F  R  G  Q  K  V  L  F  L  I  L  R  V  E  D  L  I  Q  G  *  L  M  E  E  L  C  F  G  M  V  K  N  G  M  I  L  L  I  L  Q  L  I   : G  Q  A  C  V  I  Q  N  R  Q  R  *  A  I  G  S  T  S  T  S  V  V  G  L  W  G  Y  D  L  T  K  E  Q  V  T  Y  I  L  P  M  H  I  W  G  *  *  R  *  A  L  K  V  D  *  Q  N  L  *  Q  L  R  L  R  G  Y  L  *  D  L  Q  M  T  W  M  L  M  M  K  G  M  F  I  L  R  I  A  A  Q  S  T  N  A   : G  I  L  Y  S  W  F  S  Q  Q  K  I  V  G  R  F  S  N  T  I  L  G  R  K  K  P  L  F  L  F  A  T  F  N  F  Q  M  V  C  H  *  A  R  M  V  P  S  L  Y  F  A  K  V  P  R  A   : G  Y  E  S  T  G  *  K  V  R  K  P  V  H  Q  R  *  *  Q  S  S  R  D  I  Q  T  T  Y  E  Q  M  K  E  M  S  F  G  *  Q  S  T  V  V  V  P  S  T  V  T  *  M  A  Y  T  L  D  S  V  N  S  C  *  S  F  P  S  L  Q  S  S  N  T  S  F  T  L  V  A  G  S  L  Q  L  S  *  S  T  A  P  R  A  S  C  C  R  Y  W  K  I  D  K  G  K  S  L  E  L  S  A  R  *  R  R  G  M  G  S  F  G  W  E  V  F  S  C  L  S  F  Q  F  I  S  *  N  E  L  L  S  F  C  F  G  F  G  S  S  S  I  T  S  P  L  E  N  N  S  F  Y  F  K  E  L  F  V  V  F  I  *  I  K  V  *  *  W  R  T  Q  N  L  F  V  S  *  V  I  I  *  R  S  V  *  *  F  R  D  E  K  *  N  T  I  Y  I  S  L  *  H   </second_frame>
            <third_frame>   H  S  I  I  F  S  R  K  F  F  I  V  P  C  *  I  A  N  I  L  S  Q  F  F  L  L  G  Y  T  I  I  P  K  F  S  T  P  F  H  D  F  P  F  T  Q  T  P  L  S  *  S  F  N  F  Y  Q  E  N  E  S  S  F  S  I  W  W  C  V  P  C  V  G  S  V  L  W  V  G  P  F  *  A  *  C  N  F  *  V  P  K  F  *  V  F  *  G  *  D  A  S  L  V  *  N  P  S  *  K  R  F  T  K  F  A  S  K  I  *  S  *  V  L  G  S  N  S  G  A  R  K  Y  C  F  *  S  S  G  *  R  T  L  Y  R  D  S  *  W  K  S  C  V  L  G  W  *  K  M  E  *  F  C  L  Y  F  S  *  *  :  V  R  L  V  *  S  K  T  V  S  V  E  L  *  E  V  R  A  H  L  W  *  A  F  G  V  T  I  *  Q  K  N  R  *  L  I  Y  C  R  C  I  F  G  V  N  E  G  R  P  *  R  W  I  S  R  I  F  D  N  *  G  *  G  G  T  Y  R  I  C  K  *  L  G  C  *  *  *  R  E  C  L  F  Y  G  *  Q  H  K  V  P  T  Q  :  E  F  Y  T  A  G  F  L  S  R  R  *  W  E  G  S  Q  I  Q  S  *  D  E  R  N  H  Y  S  Y  S  Q  P  S  I  S  K  W  S  V  T  K  Q  G  W  F  L  L  Y  I  L  R  R  F  Q  G  Q  :  V  T  K  V  L  A  E  R  *  E  S  R  Y  I  R  G  N  S  N  P  P  G  I  S  R  Q  R  T  S  K  *  K  K  *  V  L  G  S  N  P  L  S  S  Y  H  L  Q  L  H  K  W  H  I  P  S  T  P  S  I  L  A  E  A  S  H  L  C  K  A  P  I  P  H  S  H  W  W  Q  V  H  C  S  C  R  E  V  Q  P  R  G  Q  A  V  A  D  I  G  R  S  T  R  E  S  R  *  S  C  Q  R  G  R  G  E  G  W  E  A  L  D  G  K  C  S  H  V  F  H  F  S  L  S  A  R  M  N  S  *  A  F  A  L  A  L  A  H  H  Q  L  L  L  H  W  K  I  T  H  F  T  S  K  S  C  L  *  Y  L  F  K  *  R  F  D  S  G  V  H  R  T  C  L  *  A  K  S  S  F  K  E  V  F  D  N  S  E  M  K  N  E  T  R  Y  I  Y  R  Y  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86959" stop="86550"/>
                    <exon start="85417" stop="85142"/>
                    <exon start="84067" stop="83900"/>
                    <exon start="83264" stop="82862"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1254</number_coding_nucleotides>
                  <number_encoded_amino_acids>418</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQNFQPHFMIFPLLKPHYHKVSIFIKKMRAVSVFGGVFLVLAVYCGLDPFKHSAISEFPNFESFKVEMPAWSEIPVEKDSQNLLQKSEVKFLDQIQGPESIVFDPQGRGPYTGIADGRVVFWDGEKWNDFAYTSANRSGLCDPKPSALSYRKYEHICGRPLGLRFDKRTGDLYIADAYLGLMKVGPEGGLAESLTTEAEGVPIGFANDLDVDDEGNVYFTDSSTKYQRRNFIQLVFSAEDSGKVLKYNPRTKETTILIRNLQFPNGLSLSKDGSFFIFCEGSKGRLRKYWLKGEKAGTSEVIAILPGYPDNVRANERNEFWVAIHCRRTIYSYINGIYPRLRQFLLKLPISAKLQYLIHIGGRFTAVVVKYSPEGKLLQILEDRQGKVVRAVSEVEERDGKLWMGSVLMSFISVYQLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="97809" PGL_stop="91273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97809" e_stop="97575"/>
            <exon e_start="95662" e_stop="95543"/>
            <exon e_start="94923" e_stop="94776"/>
            <exon e_start="93573" e_stop="93525"/>
            <exon e_start="93270" e_stop="93195"/>
            <exon e_start="91528" e_stop="91273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.948" e_score="0.970"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="0.983"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="0.986"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.939"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="97809" e_stop="97575" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.948">
            <gDNA_intron_boundary i_start="97574" i_stop="95663" i_length="1912"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="95662" e_stop="95543" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="95542" i_stop="94924" i_length="619"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="94923" e_stop="94776" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="94775" i_stop="93574" i_length="1202"/>
          </intron>
          <exon e_serial="4" e_score="0.939">
            <gDNA_exon_boundary e_start="93573" e_stop="93525" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="93524" i_stop="93271" i_length="254"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="93270" e_stop="93195" e_length="76"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93194" i_stop="91529" i_length="1666"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91528" e_stop="91273" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97809" stop="97575"/>
              <exon start="95662" stop="95543"/>
              <exon start="94923" stop="94776"/>
              <exon start="93573" stop="93525"/>
              <exon start="93270" stop="93195"/>
              <exon start="91528" stop="91273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCCTTTTGCTTCAATTTGTATACAAACTTACCTTATATTATATATGCATACTATATATACATATGTATTTCTTCTTCACTCTTCCCCTTTGATCCATGTTCTATAGGTCAATAACCTAAAAAAAAACAATTAATTATAAATATAAAATGTCATTCGATATGACTTTTTCTTCTTCACCTTCCTCAGAACGCGTTTGTTACTTGCAATGTAATTTTTGCAACACCATTCTTGCG : GTTAGTGTTCCATGCAGCAACATGTTAACCTTAGTGACAGTAAGATGTGGGCATTGTGCAAATATGCTTTCTGTTAATATTGGATCTTTAATTCAAGCTCTACCCCTTCAAGATGTTCAA : AAGCTGCAAAGGCAACAGTACACAAATGTTGAAAATAATTCTAGTAATTATAAAGCTTATGGTTCATCATCATCATCCTCTTCAAAGTTCAACAGATATTCTTCCATTGTTTCTCCTCAAATTGAACCTAAAATCCCTTCGATTCGTC : CACCAGAGAAAAGACAACGTGTTCCTTCTGCGTACAACCGATTCATCAA : GGAAGAGATTCAAAGGATCAAGGCCAGTAATCCTGATATTAGCCATCGTGAAGCTTTTAGCACTGCTGCCAAAAAT : TGGGCACATTTTCCACATATTCACTTTGGACTCAAGCTGGAGGGCAACAAATAGCGAGGGAAAAAAAACTTTAATATATGATATATACATATATATATATGCATGTCTTTTATGTTGTTTTCGTCGAAGATTTATCAAAAATAATGTTTTTATTTTTTAAAAATTACTTTTTTTTTAGATTTTATTTATAAAAATATGCTGAATATGTTATTATTATTATTGTCCTCGTCTTAATATTATTTTCAGAGTTGTGAAA</gDNA_template>
            <first_frame> N  P  F  A  S  I  C  I  Q  T  Y  L  I  L  Y  M  H  T  I  Y  T  Y  V  F  L  L  H  S  S  P  L  I  H  V  L  *  V  N  N  L  K  K  N  N  *  L  *  I  *  N  V  I  R  Y  D  F  F  F  F  T  F  L  R  T  R  L  L  L  A  M  *  F  L  Q  H  H  S  C   : G  *  C  S  M  Q  Q  H  V  N  L  S  D  S  K  M  W  A  L  C  K  Y  A  F  C  *  Y  W  I  F  N  S  S  S  T  P  S  R  C  S   : K  A  A  K  A  T  V  H  K  C  *  K  *  F  *  *  L  *  S  L  W  F  I  I  I  I  L  F  K  V  Q  Q  I  F  F  H  C  F  S  S  N  *  T  *  N  P  F  D  S  S :   T  R  E  K  T  T  C  S  F  C  V  Q  P  I  H  Q  :  G  R  D  S  K  D  Q  G  Q  *  S  *  Y  *  P  S  *  S  F  *  H  C  C  Q  K   : L  G  T  F  S  T  Y  S  L  W  T  Q  A  G  G  Q  Q  I  A  R  E  K  K  L  *  Y  M  I  Y  T  Y  I  Y  M  H  V  F  Y  V  V  F  V  E  D  L  S  K  I  M  F  L  F  F  K  N  Y  F  F  F  R  F  Y  L  *  K  Y  A  E  Y  V  I  I  I  I  V  L  V  L  I  L  F  S  E  L  *   </first_frame>
            <second_frame>  I  L  L  L  Q  F  V  Y  K  L  T  L  Y  Y  I  C  I  L  Y  I  H  M  Y  F  F  F  T  L  P  L  *  S  M  F  Y  R  S  I  T  *  K  K  T  I  N  Y  K  Y  K  M  S  F  D  M  T  F  S  S  S  P  S  S  E  R  V  C  Y  L  Q  C  N  F  C  N  T  I  L  A  :  V  S  V  P  C  S  N  M  L  T  L  V  T  V  R  C  G  H  C  A  N  M  L  S  V  N  I  G  S  L  I  Q  A  L  P  L  Q  D  V  Q  :  K  L  Q  R  Q  Q  Y  T  N  V  E  N  N  S  S  N  Y  K  A  Y  G  S  S  S  S  S  S  S  K  F  N  R  Y  S  S  I  V  S  P  Q  I  E  P  K  I  P  S  I  R   : P  P  E  K  R  Q  R  V  P  S  A  Y  N  R  F  I  K :   E  E  I  Q  R  I  K  A  S  N  P  D  I  S  H  R  E  A  F  S  T  A  A  K  N  :  W  A  H  F  P  H  I  H  F  G  L  K  L  E  G  N  K  *  R  G  K  K  N  F  N  I  *  Y  I  H  I  Y  I  C  M  S  F  M  L  F  S  S  K  I  Y  Q  K  *  C  F  Y  F  L  K  I  T  F  F  L  D  F  I  Y  K  N  M  L  N  M  L  L  L  L  L  S  S  S  *  Y  Y  F  Q  S  C  E  </second_frame>
            <third_frame>   S  F  C  F  N  L  Y  T  N  L  P  Y  I  I  Y  A  Y  Y  I  Y  I  C  I  S  S  S  L  F  P  F  D  P  C  S  I  G  Q  *  P  K  K  K  Q  L  I  I  N  I  K  C  H  S  I  *  L  F  L  L  H  L  P  Q  N  A  F  V  T  C  N  V  I  F  A  T  P  F  L  R :   L  V  F  H  A  A  T  C  *  P  *  *  Q  *  D  V  G  I  V  Q  I  C  F  L  L  I  L  D  L  *  F  K  L  Y  P  F  K  M  F  K :   S  C  K  G  N  S  T  Q  M  L  K  I  I  L  V  I  I  K  L  M  V  H  H  H  H  P  L  Q  S  S  T  D  I  L  P  L  F  L  L  K  L  N  L  K  S  L  R  F  V  :  H  Q  R  K  D  N  V  F  L  L  R  T  T  D  S  S   : R  K  R  F  K  G  S  R  P  V  I  L  I  L  A  I  V  K  L  L  A  L  L  P  K  I :   G  H  I  F  H  I  F  T  L  D  S  S  W  R  A  T  N  S  E  G  K  K  T  L  I  Y  D  I  Y  I  Y  I  Y  A  C  L  L  C  C  F  R  R  R  F  I  K  N  N  V  F  I  F  *  K  L  L  F  F  *  I  L  F  I  K  I  C  *  I  C  Y  Y  Y  Y  C  P  R  L  N  I  I  F  R  V  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97688" stop="97575"/>
                    <exon start="95662" stop="95543"/>
                    <exon start="94923" stop="94776"/>
                    <exon start="93573" stop="93525"/>
                    <exon start="93270" stop="93195"/>
                    <exon start="91528" stop="91475"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKTINYKYKMSFDMTFSSSPSSERVCYLQCNFCNTILAVSVPCSNMLTLVTVRCGHCANMLSVNIGSLIQALPLQDVQKLQRQQYTNVENNSSNYKAYGSSSSSSSKFNRYSSIVSPQIEPKIPSIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLEGNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="101687" PGL_stop="105574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101687" e_stop="101934"/>
            <exon e_start="103705" e_stop="103963"/>
            <exon e_start="105546" e_stop="105574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.868" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101687" e_stop="101934" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="101935" i_stop="103704" i_length="1770"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103705" e_stop="103963" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.868">
            <gDNA_intron_boundary i_start="103964" i_stop="105545" i_length="1582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105546" e_stop="105574" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101687" stop="101934"/>
              <exon start="103705" stop="103963"/>
              <exon start="105546" stop="105574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATAGTAGAGCCAAAAAAAGTTTCAATTTACTTGAGATAAAGAAAGCATATATTCGATTATTAAAGTCAGAAGCAACAATGGGTCATCATCATCATCAGTTAACCGACCCACTTGTCACTCTTTGTACTAGTTGTAAAAGTTTCTTCTTTTTCTTGTCTTTTTCTTGCAGAATTTGTCAATGGAACCTTTGATCTTCAAAATTAGGCTTCTTATTCTTGCTTGGGTGCATTTCAGATCTCATTCAG : GTCCAATATCCTTGGTGAAACACTTCTCTAATAAAGATATAAAGAAAGCAACTGATGGTTTTAGGAGAATTGTTTACAACTCTTCCAAAATAGTTGCTTACAGAGCAAAGTTTCAAAATGGCCATGCTGCGTTTGTGAAAGAAGTCCGAGGTTTCGAAGATGAGGATGATACGGCCTTCTACAGGGAGGTACAGTTACTCGGTCGCTTGCATCATCGACATATTGCTGCACTTAATGGGTTCTCTTGCGGCCCTAAGAG : GTTCCTAGTCTTTGAAAATATGGAAAAAG</gDNA_template>
            <first_frame> L  I  V  E  P  K  K  V  S  I  Y  L  R  *  R  K  H  I  F  D  Y  *  S  Q  K  Q  Q  W  V  I  I  I  I  S  *  P  T  H  L  S  L  F  V  L  V  V  K  V  S  S  F  S  C  L  F  L  A  E  F  V  N  G  T  F  D  L  Q  N  *  A  S  Y  S  C  L  G  A  F  Q  I  S  F  R :   S  N  I  L  G  E  T  L  L  *  *  R  Y  K  E  S  N  *  W  F  *  E  N  C  L  Q  L  F  Q  N  S  C  L  Q  S  K  V  S  K  W  P  C  C  V  C  E  R  S  P  R  F  R  R  *  G  *  Y  G  L  L  Q  G  G  T  V  T  R  S  L  A  S  S  T  Y  C  C  T  *  W  V  L  L  R  P  *  E  :  V  P  S  L  *  K  Y  G  K   </first_frame>
            <second_frame>  *  *  *  S  Q  K  K  F  Q  F  T  *  D  K  E  S  I  Y  S  I  I  K  V  R  S  N  N  G  S  S  S  S  S  V  N  R  P  T  C  H  S  L  Y  *  L  *  K  F  L  L  F  L  V  F  F  L  Q  N  L  S  M  E  P  L  I  F  K  I  R  L  L  I  L  A  W  V  H  F  R  S  H  S   : G  P  I  S  L  V  K  H  F  S  N  K  D  I  K  K  A  T  D  G  F  R  R  I  V  Y  N  S  S  K  I  V  A  Y  R  A  K  F  Q  N  G  H  A  A  F  V  K  E  V  R  G  F  E  D  E  D  D  T  A  F  Y  R  E  V  Q  L  L  G  R  L  H  H  R  H  I  A  A  L  N  G  F  S  C  G  P  K  R :   F  L  V  F  E  N  M  E  K  </second_frame>
            <third_frame>   N  S  R  A  K  K  S  F  N  L  L  E  I  K  K  A  Y  I  R  L  L  K  S  E  A  T  M  G  H  H  H  H  Q  L  T  D  P  L  V  T  L  C  T  S  C  K  S  F  F  F  F  L  S  F  S  C  R  I  C  Q  W  N  L  *  S  S  K  L  G  F  L  F  L  L  G  C  I  S  D  L  I  Q  :  V  Q  Y  P  W  *  N  T  S  L  I  K  I  *  R  K  Q  L  M  V  L  G  E  L  F  T  T  L  P  K  *  L  L  T  E  Q  S  F  K  M  A  M  L  R  L  *  K  K  S  E  V  S  K  M  R  M  I  R  P  S  T  G  R  Y  S  Y  S  V  A  C  I  I  D  I  L  L  H  L  M  G  S  L  A  A  L  R   : G  S  *  S  L  K  I  W  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101826" stop="101934"/>
                    <exon start="103705" stop="103963"/>
                    <exon start="105546" stop="105573"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLLFLVFFLQNLSMEPLIFKIRLLILAWVHFRSHSGPISLVKHFSNKDIKKATDGFRRIVYNSSKIVAYRAKFQNGHAAFVKEVRGFEDEDDTAFYREVQLLGRLHHRHIAALNGFSCGPKRFLVFENMEK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="105587" PGL_stop="106870"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105587" e_stop="105598"/>
            <exon e_start="105697" e_stop="105764"/>
            <exon e_start="106013" e_stop="106102"/>
            <exon e_start="106225" e_stop="106294"/>
            <exon e_start="106379" e_stop="106870"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105587" e_stop="105598" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="105599" i_stop="105696" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105697" e_stop="105764" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.910" acc_prob="0.981">
            <gDNA_intron_boundary i_start="105765" i_stop="106012" i_length="248"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106013" e_stop="106102" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.799" acc_prob="0.953">
            <gDNA_intron_boundary i_start="106103" i_stop="106224" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106225" e_stop="106294" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.987">
            <gDNA_intron_boundary i_start="106295" i_stop="106378" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="106379" e_stop="106870" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105587" stop="105598"/>
              <exon start="105697" stop="105764"/>
              <exon start="106013" stop="106102"/>
              <exon start="106225" stop="106294"/>
              <exon start="106379" stop="106870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACACCTTTCTG : ACCCTCTGATGACTCCACTAAACTGGAGAATAAGACTGCAGATAGCAGTTGGCATCGCTGCTGCTTTA : GAATATCTCCACTTCTTTTGTGATCCGCCGATGTACCACGTTTCAGTCAGTTCAAGTACCATCATGCTGGACGAGAACTTCACAGCTAAA : CTCTGTGATGTTAGCCTCCTTTGTTCTGTCGAGAACAACAATCCACTTCCGAAGTCTAAATGCTCCAAAG : AATGTGGTAATGAGATCTGCAAACAGACAATCTTCCAGCTTGGTTTGCTGATCCTCGAGTTAGTCACCGGTCAATCCTCAGAAGAAGGAGGTGTTGACTTAGTTCAATGGGTTCAAGATTCTCGCTTCCGAAGAAGATCCATTCACCAGATGATTGATCCTGATCTCGGAGACAGCTACGATTTCAAAGAGCTTAAAGGTCTTTTGGCAGTTGCAAAAATGTGTGTACAATCTATCCATAAGCCTACAATAAAGACCCCTCAAATATTGTGGTATCTCCAAAAGAAACTGGGCAGGACTCCAGTAGTTTGCTGATGACTTGAGTCATGTCATGTTCACAGATATAGATCATAGATTGTGTGAGTAGACATTTTTTTTGTAAAGCTATGTTACTCGGACTCTTCAAATCGAAGAGTCCACACAACTTAGTCTGTAAGTAGTCTGCTGCGTTTTGACATTGATTATGAAATTAGACCTCTTCATAAAAACAAGA</gDNA_template>
            <first_frame> N  T  F  L  :  T  L  *  *  L  H  *  T  G  E  *  D  C  R  *  Q  L  A  S  L  L  L  * :   N  I  S  T  S  F  V  I  R  R  C  T  T  F  Q  S  V  Q  V  P  S  C  W  T  R  T  S  Q  L  N :   S  V  M  L  A  S  F  V  L  S  R  T  T  I  H  F  R  S  L  N  A  P  K  :  N  V  V  M  R  S  A  N  R  Q  S  S  S  L  V  C  *  S  S  S  *  S  P  V  N  P  Q  K  K  E  V  L  T  *  F  N  G  F  K  I  L  A  S  E  E  D  P  F  T  R  *  L  I  L  I  S  E  T  A  T  I  S  K  S  L  K  V  F  W  Q  L  Q  K  C  V  Y  N  L  S  I  S  L  Q  *  R  P  L  K  Y  C  G  I  S  K  R  N  W  A  G  L  Q  *  F  A  D  D  L  S  H  V  M  F  T  D  I  D  H  R  L  C  E  *  T  F  F  L  *  S  Y  V  T  R  T  L  Q  I  E  E  S  T  Q  L  S  L  *  V  V  C  C  V  L  T  L  I  M  K  L  D  L  F  I  K  T  R </first_frame>
            <second_frame>  T  P  F  * :   P  S  D  D  S  T  K  L  E  N  K  T  A  D  S  S  W  H  R  C  C  F   : R  I  S  P  L  L  L  *  S  A  D  V  P  R  F  S  Q  F  K  Y  H  H  A  G  R  E  L  H  S  *   : T  L  *  C  *  P  P  L  F  C  R  E  Q  Q  S  T  S  E  V  *  M  L  Q  R :   M  W  *  *  D  L  Q  T  D  N  L  P  A  W  F  A  D  P  R  V  S  H  R  S  I  L  R  R  R  R  C  *  L  S  S  M  G  S  R  F  S  L  P  K  K  I  H  S  P  D  D  *  S  *  S  R  R  Q  L  R  F  Q  R  A  *  R  S  F  G  S  C  K  N  V  C  T  I  Y  P  *  A  Y  N  K  D  P  S  N  I  V  V  S  P  K  E  T  G  Q  D  S  S  S  L  L  M  T  *  V  M  S  C  S  Q  I  *  I  I  D  C  V  S  R  H  F  F  C  K  A  M  L  L  G  L  F  K  S  K  S  P  H  N  L  V  C  K  *  S  A  A  F  *  H  *  L  *  N  *  T  S  S  *  K  Q   </second_frame>
            <third_frame>   H  L  S   : D  P  L  M  T  P  L  N  W  R  I  R  L  Q  I  A  V  G  I  A  A  A  L  :  E  Y  L  H  F  F  C  D  P  P  M  Y  H  V  S  V  S  S  S  T  I  M  L  D  E  N  F  T  A  K  :  L  C  D  V  S  L  L  C  S  V  E  N  N  N  P  L  P  K  S  K  C  S  K   : E  C  G  N  E  I  C  K  Q  T  I  F  Q  L  G  L  L  I  L  E  L  V  T  G  Q  S  S  E  E  G  G  V  D  L  V  Q  W  V  Q  D  S  R  F  R  R  R  S  I  H  Q  M  I  D  P  D  L  G  D  S  Y  D  F  K  E  L  K  G  L  L  A  V  A  K  M  C  V  Q  S  I  H  K  P  T  I  K  T  P  Q  I  L  W  Y  L  Q  K  K  L  G  R  T  P  V  V  C  *  *  L  E  S  C  H  V  H  R  Y  R  S  *  I  V  *  V  D  I  F  F  V  K  L  C  Y  S  D  S  S  N  R  R  V  H  T  T  *  S  V  S  S  L  L  R  F  D  I  D  Y  E  I  R  P  L  H  K  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105589" stop="105598"/>
                    <exon start="105697" stop="105764"/>
                    <exon start="106013" stop="106102"/>
                    <exon start="106225" stop="106294"/>
                    <exon start="106379" stop="106692"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLSDPLMTPLNWRIRLQIAVGIAAALEYLHFFCDPPMYHVSVSSSTIMLDENFTAKLCDVSLLCSVENNNPLPKSKCSKECGNEICKQTIFQLGLLILELVTGQSSEEGGVDLVQWVQDSRFRRRSIHQMIDPDLGDSYDFKELKGLLAVAKMCVQSIHKPTIKTPQILWYLQKKLGRTPVVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="110458" PGL_stop="107144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110458" e_stop="110140"/>
            <exon e_start="109193" e_stop="109028"/>
            <exon e_start="108699" e_stop="108561"/>
            <exon e_start="108365" e_stop="108089"/>
            <exon e_start="107920" e_stop="107722"/>
            <exon e_start="107607" e_stop="107144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.975"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.832" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.944" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="110458" e_stop="110140" e_length="319"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="110139" i_stop="109194" i_length="946"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109193" e_stop="109028" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="109027" i_stop="108700" i_length="328"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108699" e_stop="108561" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.832" acc_prob="0.996">
            <gDNA_intron_boundary i_start="108560" i_stop="108366" i_length="195"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108365" e_stop="108089" e_length="277"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="108088" i_stop="107921" i_length="168"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="107920" e_stop="107722" e_length="199"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.944">
            <gDNA_intron_boundary i_start="107721" i_stop="107608" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107607" e_stop="107144" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110458" stop="110140"/>
              <exon start="109193" stop="109028"/>
              <exon start="108699" stop="108561"/>
              <exon start="108365" stop="108089"/>
              <exon start="107920" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107862" stop="107722"/>
              <exon start="107607" stop="107144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAAGAGAATTCTAGAGCATTCTCCACTATTCTCAATTTCTCATTTCACCTGAGCCTTCAAAGATGTGTATATATACACCCCTTTTGAGTCCTTGTTGGAGTCAAGTATTTGGGTGTTCTGTTCTTTTCATACTGTTCTTGAAAAGAAGTTGAAATTGAAAAGGATGTTTGGAAGAGGAGGGAAAAAAAAGAGTGATAACACAAAGTTTTATGAAATCTTGGGTGTTTCCAAGAATGCTTCAGAAGATGAAATCAAGAAAGCTTATAGAAAAGCTGCTATGAAGAATCACCCTGATAAGGGTGGTGATCCTGAAAAG : TTTAAGGAGCTAGCTCAAGCTTATGAGGTCTTGAGTGACTCACAGAAGCGTGAGATTTATGATCAGTATGGAGAAGAAGCACTGAAAGAAGGAATGGGTGGTGGTGGTGGCACACATGATCCATTTGACCTCTTTAATTCCTTCTTTAGTGGAAGTCCTTTTGGAG : GTGGTGGTCGTAGAGGACAAAGAGAGAGGAGGGGTGACGATGTAGTGCATCCATTGAAGGTGTCGCTTGAGGACCTATACAATGGGATGACCAAGAAACTATCGCTTTCGCGCAATGTTATTTGCTCGAAGTGTAGTGG : CAAGGGGTCGAAGTCTGGTGAATCAATGAAGTGTTCTGGTTGTGAAGGTACTGGTATGAAGGTTTCAATCAGACAGCTTGGGCCTGGAATGATCCAGCAAATGCAGCAGCCTTGTAATAAATGCAAGGGTACTGGAGAGACAATTGACGATAAGGATCGTTGTCCTCAATGCAAAGGTAAAAAAGTGGTACCAGAGAAGAAAGTCATTGAAGTCCATGTTGAAAAAGGAATGCAAAATGGACAGAAAATTACATTCCCTGGCGAGGCTGATGAAGCG : CCTGATACAGTTACTGGAGATGTGGTTTTCGTTCTCCAACAGAAAGATCACCCGAAGTTCAAGAGGAAGGGTGATGACCTGTTTGTTGATCACACATTGACCTTAACTGAGGCACTGTGTGGTTTCCAGTTCATATTGGCACACTTGGATGGCAGACGGCTCCTCGTAAAGTCAAACCCTGGAGAAGTTGTTAAACCTG : ATCAATTCAAGGCTATCAATGATGAAGGAATGCCAGTTTACCAGAGGCCATTCATGAAGGGTAAACTGTACATTCATTTCATCGTGGAATTCCCGGATTCGTTGAGCCTGCCACAGGTGCAGCTTCTGGAGGCAATGTTACCATCAAGGCCTACATCACAGTACTCTGACATGGAACTGGATGAATGTGAGGAGACCACATTGCATGATGTGAATATGGAGGAAGAAATGAGAAGGAAACAAGCTGCACAACAAGAAGCATATGATGAGGATGAAGAGATGTCTGGTGGTGGAGGACAGAGAGTACAGTGTGCTCAACAGTAGATGTAGAAAGATTTACCAGTTTGAACTTTGCTTATAGTTTAGTTTGGTTTACTGTTTTCTGTTGTTTTGGAAATGACATGTTTTGGGAAGTCAAAAAACTGATGCTTTAGTGAAATAGAAATATTATTTTCTTGGGGAACA</gDNA_template>
            <first_frame> K  K  E  N  S  R  A  F  S  T  I  L  N  F  S  F  H  L  S  L  Q  R  C  V  Y  I  H  P  F  *  V  L  V  G  V  K  Y  L  G  V  L  F  F  S  Y  C  S  *  K  E  V  E  I  E  K  D  V  W  K  R  R  E  K  K  E  *  *  H  K  V  L  *  N  L  G  C  F  Q  E  C  F  R  R  *  N  Q  E  S  L  *  K  S  C  Y  E  E  S  P  *  *  G  W  *  S  *  K   : V  *  G  A  S  S  S  L  *  G  L  E  *  L  T  E  A  *  D  L  *  S  V  W  R  R  S  T  E  R  R  N  G  W  W  W  W  H  T  *  S  I  *  P  L  *  F  L  L  *  W  K  S  F  W  R :   W  W  S  *  R  T  K  R  E  E  G  *  R  C  S  A  S  I  E  G  V  A  *  G  P  I  Q  W  D  D  Q  E  T  I  A  F  A  Q  C  Y  L  L  E  V  *  W  :  Q  G  V  E  V  W  *  I  N  E  V  F  W  L  *  R  Y  W  Y  E  G  F  N  Q  T  A  W  A  W  N  D  P  A  N  A  A  A  L  *  *  M  Q  G  Y  W  R  D  N  *  R  *  G  S  L  S  S  M  Q  R  *  K  S  G  T  R  E  E  S  H  *  S  P  C  *  K  R  N  A  K  W  T  E  N  Y  I  P  W  R  G  *  *  S   : A  *  Y  S  Y  W  R  C  G  F  R  S  P  T  E  R  S  P  E  V  Q  E  E  G  *  *  P  V  C  *  S  H  I  D  L  N  *  G  T  V  W  F  P  V  H  I  G  T  L  G  W  Q  T  A  P  R  K  V  K  P  W  R  S  C  *  T  * :   S  I  Q  G  Y  Q  *  *  R  N  A  S  L  P  E  A  I  H  E  G  *  T  V  H  S  F  H  R  G  I  P  G  F  V  E  P  A  T  G  A  A  S  G  G  N  V  T  I  K  A  Y  I  T  V  L  *  H  G  T  G  *  M  *  G  D  H  I  A  *  C  E  Y  G  G  R  N  E  K  E  T  S  C  T  T  R  S  I  *  *  G  *  R  D  V  W  W  W  R  T  E  S  T  V  C  S  T  V  D  V  E  R  F  T  S  L  N  F  A  Y  S  L  V  W  F  T  V  F  C  C  F  G  N  D  M  F  W  E  V  K  K  L  M  L  *  *  N  R  N  I  I  F  L  G  N  </first_frame>
            <second_frame>  R  K  R  I  L  E  H  S  P  L  F  S  I  S  H  F  T  *  A  F  K  D  V  Y  I  Y  T  P  F  E  S  L  L  E  S  S  I  W  V  F  C  S  F  H  T  V  L  E  K  K  L  K  L  K  R  M  F  G  R  G  G  K  K  K  S  D  N  T  K  F  Y  E  I  L  G  V  S  K  N  A  S  E  D  E  I  K  K  A  Y  R  K  A  A  M  K  N  H  P  D  K  G  G  D  P  E  K  :  F  K  E  L  A  Q  A  Y  E  V  L  S  D  S  Q  K  R  E  I  Y  D  Q  Y  G  E  E  A  L  K  E  G  M  G  G  G  G  G  T  H  D  P  F  D  L  F  N  S  F  F  S  G  S  P  F  G   : G  G  G  R  R  G  Q  R  E  R  R  G  D  D  V  V  H  P  L  K  V  S  L  E  D  L  Y  N  G  M  T  K  K  L  S  L  S  R  N  V  I  C  S  K  C  S  G :   K  G  S  K  S  G  E  S  M  K  C  S  G  C  E  G  T  G  M  K  V  S  I  R  Q  L  G  P  G  M  I  Q  Q  M  Q  Q  P  C  N  K  C  K  G  T  G  E  T  I  D  D  K  D  R  C  P  Q  C  K  G  K  K  V  V  P  E  K  K  V  I  E  V  H  V  E  K  G  M  Q  N  G  Q  K  I  T  F  P  G  E  A  D  E  A  :  P  D  T  V  T  G  D  V  V  F  V  L  Q  Q  K  D  H  P  K  F  K  R  K  G  D  D  L  F  V  D  H  T  L  T  L  T  E  A  L  C  G  F  Q  F  I  L  A  H  L  D  G  R  R  L  L  V  K  S  N  P  G  E  V  V  K  P   : D  Q  F  K  A  I  N  D  E  G  M  P  V  Y  Q  R  P  F  M  K  G  K  L  Y  I  H  F  I  V  E  F  P  D  S  L  S  L  P  Q  V  Q  L  L  E  A  M  L  P  S  R  P  T  S  Q  Y  S  D  M  E  L  D  E  C  E  E  T  T  L  H  D  V  N  M  E  E  E  M  R  R  K  Q  A  A  Q  Q  E  A  Y  D  E  D  E  E  M  S  G  G  G  G  Q  R  V  Q  C  A  Q  Q  *  M  *  K  D  L  P  V  *  T  L  L  I  V  *  F  G  L  L  F  S  V  V  L  E  M  T  C  F  G  K  S  K  N  *  C  F  S  E  I  E  I  L  F  S  W  G  T </second_frame>
            <third_frame>   E  R  E  F  *  S  I  L  H  Y  S  Q  F  L  I  S  P  E  P  S  K  M  C  I  Y  T  P  L  L  S  P  C  W  S  Q  V  F  G  C  S  V  L  F  I  L  F  L  K  R  S  *  N  *  K  G  C  L  E  E  E  G  K  K  R  V  I  T  Q  S  F  M  K  S  W  V  F  P  R  M  L  Q  K  M  K  S  R  K  L  I  E  K  L  L  *  R  I  T  L  I  R  V  V  I  L  K  S :   L  R  S  *  L  K  L  M  R  S  *  V  T  H  R  S  V  R  F  M  I  S  M  E  K  K  H  *  K  K  E  W  V  V  V  V  A  H  M  I  H  L  T  S  L  I  P  S  L  V  E  V  L  L  E  :  V  V  V  V  E  D  K  E  R  G  G  V  T  M  *  C  I  H  *  R  C  R  L  R  T  Y  T  M  G  *  P  R  N  Y  R  F  R  A  M  L  F  A  R  S  V  V   : A  R  G  R  S  L  V  N  Q  *  S  V  L  V  V  K  V  L  V  *  R  F  Q  S  D  S  L  G  L  E  *  S  S  K  C  S  S  L  V  I  N  A  R  V  L  E  R  Q  L  T  I  R  I  V  V  L  N  A  K  V  K  K  W  Y  Q  R  R  K  S  L  K  S  M  L  K  K  E  C  K  M  D  R  K  L  H  S  L  A  R  L  M  K  R :   L  I  Q  L  L  E  M  W  F  S  F  S  N  R  K  I  T  R  S  S  R  G  R  V  M  T  C  L  L  I  T  H  *  P  *  L  R  H  C  V  V  S  S  S  Y  W  H  T  W  M  A  D  G  S  S  *  S  Q  T  L  E  K  L  L  N  L  :  I  N  S  R  L  S  M  M  K  E  C  Q  F  T  R  G  H  S  *  R  V  N  C  T  F  I  S  S  W  N  S  R  I  R  *  A  C  H  R  C  S  F  W  R  Q  C  Y  H  Q  G  L  H  H  S  T  L  T  W  N  W  M  N  V  R  R  P  H  C  M  M  *  I  W  R  K  K  *  E  G  N  K  L  H  N  K  K  H  M  M  R  M  K  R  C  L  V  V  E  D  R  E  Y  S  V  L  N  S  R  C  R  K  I  Y  Q  F  E  L  C  L  *  F  S  L  V  Y  C  F  L  L  F  W  K  *  H  V  L  G  S  Q  K  T  D  A  L  V  K  *  K  Y  Y  F  L  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110403" stop="110140"/>
                    <exon start="109193" stop="109028"/>
                    <exon start="108699" stop="108561"/>
                    <exon start="108365" stop="108089"/>
                    <exon start="107920" stop="107722"/>
                    <exon start="107607" stop="107285"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1365</number_coding_nucleotides>
                  <number_encoded_amino_acids>455</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFKDVYIYTPFESLLESSIWVFCSFHTVLEKKLKLKRMFGRGGKKKSDNTKFYEILGVSKNASEDEIKKAYRKAAMKNHPDKGGDPEKFKELAQAYEVLSDSQKREIYDQYGEEALKEGMGGGGGTHDPFDLFNSFFSGSPFGGGGRRGQRERRGDDVVHPLKVSLEDLYNGMTKKLSLSRNVICSKCSGKGSKSGESMKCSGCEGTGMKVSIRQLGPGMIQQMQQPCNKCKGTGETIDDKDRCPQCKGKKVVPEKKVIEVHVEKGMQNGQKITFPGEADEAPDTVTGDVVFVLQQKDHPKFKRKGDDLFVDHTLTLTEALCGFQFILAHLDGRRLLVKSNPGEVVKPDQFKAINDEGMPVYQRPFMKGKLYIHFIVEFPDSLSLPQVQLLEAMLPSRPTSQYSDMELDECEETTLHDVNMEEEMRRKQAAQQEAYDEDEEMSGGGGQRVQCAQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="119111" PGL_stop="122648"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119111" e_stop="119155"/>
            <exon e_start="119739" e_stop="119852"/>
            <exon e_start="121038" e_stop="121560"/>
            <exon e_start="122117" e_stop="122648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.978"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.943"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="119111" e_stop="119155" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="119156" i_stop="119738" i_length="583"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119739" e_stop="119852" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="119853" i_stop="121037" i_length="1185"/>
          </intron>
          <exon e_serial="3" e_score="0.943">
            <gDNA_exon_boundary e_start="121038" e_stop="121560" e_length="523"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="121561" i_stop="122116" i_length="556"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="122117" e_stop="122648" e_length="532"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119111" stop="119155"/>
              <exon start="119739" stop="119852"/>
              <exon start="121038" stop="121560"/>
              <exon start="122117" stop="122648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324122" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGAACAACAATTAGAACATGACGCTCGTGTACGAGAGATCGAA : GAGGGCTGGTGTGACAGTGTTGGATCTGTTGAGCAAATTCAAGAAAAGTTGCTAAAGAGACAAGAGGCAGCTGCTAAGCGTGAAAGAGCAATGGCCTATGCTTTAGCTCACCAG : TGGCAGGCAGGATCCAGGCAGCAGGCTACACTTTCTGGGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTAGAGAGATGGATGGCAGTACGCCCATGGGAAAATCGTTTTCTAGACCTTAATGTCAGAGATGGAGTCATGCCTAATGAAAATGAATCAGCCGAACCTGTAAACGGGATGAAGAACCAGGTAAAAGTTGCTGGGAAGAAACCAGCAACTACAACTCTTTCAAATGATAGAGTGGGTCCATCTCATTCAAGCAGTAACTCAAAATCAAATGAAAAGGCAGCAGCATCGCTCTCTGATGGTTGCAGTTCTTCCCCAAATGTGTCAGCAAGCACACAAGAAACACCTGCAGCATTAGTTAACAAACCTAAGTCCAAACCAAATCGTGAAGATTTAGTTGAGGAAGCTAGTTCAAAACCCGTCCTTGGTTCTAGATCACACAGCAATCCTAAGGAGAGATCTACTCCCTCTGATAAACAAGGAAAACAGAGATTGTCTCTGCCTGGTAGCG : GTCTTGCACCTCAAACAGCGAGACAACCAAGCAGAACCATCAAAAGGACATCTAGTACGCAGAAGCCTTTGAAGGAGAAGTCCAAATTAAACGAAACTGATACCAAGTCTACAGCAACTGTTTCACAACAGGCTGCTGATTAGTTTTTAGGTACTCGTTGAAGATCCCGATCTCAGAACCAAGTGTCACCCTTGCTTGTAAATACAGGGAACCTTCTTAAAGGGGAGTGATGGTATGTTGTCCACGGCAGAGTTAAAAGGAGATAGGCTTGCTGCCATCTCCTGAATAACATCTTCGCATTTGTTTCAATTCTTGTCATAATTCGTGTAATTTATATAATAGCGCGTTGTTTTCTTTACCCCTCCTCCCTCCCAGTGTAAAAAAGAGGATGAATTTGCTTTTTGTGCCACTTTTCTTGAGCTGAAAACTGGGGAATTTGGTGAGTTTGATTGCCAATTTCTTTGTTGTGTGTTGTACAAGATCTGAATGTAGGATTCATTCATTAATCTAGAGATTGTAGACCATATTGTGC</gDNA_template>
            <first_frame> V  E  Q  Q  L  E  H  D  A  R  V  R  E  I  E  :  E  G  W  C  D  S  V  G  S  V  E  Q  I  Q  E  K  L  L  K  R  Q  E  A  A  A  K  R  E  R  A  M  A  Y  A  L  A  H  Q  :  W  Q  A  G  S  R  Q  Q  A  T  L  S  G  F  E  P  D  K  S  S  W  G  W  N  W  L  E  R  W  M  A  V  R  P  W  E  N  R  F  L  D  L  N  V  R  D  G  V  M  P  N  E  N  E  S  A  E  P  V  N  G  M  K  N  Q  V  K  V  A  G  K  K  P  A  T  T  T  L  S  N  D  R  V  G  P  S  H  S  S  S  N  S  K  S  N  E  K  A  A  A  S  L  S  D  G  C  S  S  S  P  N  V  S  A  S  T  Q  E  T  P  A  A  L  V  N  K  P  K  S  K  P  N  R  E  D  L  V  E  E  A  S  S  K  P  V  L  G  S  R  S  H  S  N  P  K  E  R  S  T  P  S  D  K  Q  G  K  Q  R  L  S  L  P  G  S   : G  L  A  P  Q  T  A  R  Q  P  S  R  T  I  K  R  T  S  S  T  Q  K  P  L  K  E  K  S  K  L  N  E  T  D  T  K  S  T  A  T  V  S  Q  Q  A  A  D  *  F  L  G  T  R  *  R  S  R  S  Q  N  Q  V  S  P  L  L  V  N  T  G  N  L  L  K  G  E  *  W  Y  V  V  H  G  R  V  K  R  R  *  A  C  C  H  L  L  N  N  I  F  A  F  V  S  I  L  V  I  I  R  V  I  Y  I  I  A  R  C  F  L  Y  P  S  S  L  P  V  *  K  R  G  *  I  C  F  L  C  H  F  S  *  A  E  N  W  G  I  W  *  V  *  L  P  I  S  L  L  C  V  V  Q  D  L  N  V  G  F  I  H  *  S  R  D  C  R  P  Y  C   </first_frame>
            <second_frame>  L  N  N  N  *  N  M  T  L  V  Y  E  R  S  K :   R  A  G  V  T  V  L  D  L  L  S  K  F  K  K  S  C  *  R  D  K  R  Q  L  L  S  V  K  E  Q  W  P  M  L  *  L  T  S :   G  R  Q  D  P  G  S  R  L  H  F  L  G  L  N  Q  I  K  A  A  G  V  G  T  G  *  R  D  G  W  Q  Y  A  H  G  K  I  V  F  *  T  L  M  S  E  M  E  S  C  L  M  K  M  N  Q  P  N  L  *  T  G  *  R  T  R  *  K  L  L  G  R  N  Q  Q  L  Q  L  F  Q  M  I  E  W  V  H  L  I  Q  A  V  T  Q  N  Q  M  K  R  Q  Q  H  R  S  L  M  V  A  V  L  P  Q  M  C  Q  Q  A  H  K  K  H  L  Q  H  *  L  T  N  L  S  P  N  Q  I  V  K  I  *  L  R  K  L  V  Q  N  P  S  L  V  L  D  H  T  A  I  L  R  R  D  L  L  P  L  I  N  K  E  N  R  D  C  L  C  L  V  A  :  V  L  H  L  K  Q  R  D  N  Q  A  E  P  S  K  G  H  L  V  R  R  S  L  *  R  R  S  P  N  *  T  K  L  I  P  S  L  Q  Q  L  F  H  N  R  L  L  I  S  F  *  V  L  V  E  D  P  D  L  R  T  K  C  H  P  C  L  *  I  Q  G  T  F  L  K  G  S  D  G  M  L  S  T  A  E  L  K  G  D  R  L  A  A  I  S  *  I  T  S  S  H  L  F  Q  F  L  S  *  F  V  *  F  I  *  *  R  V  V  F  F  T  P  P  P  S  Q  C  K  K  E  D  E  F  A  F  C  A  T  F  L  E  L  K  T  G  E  F  G  E  F  D  C  Q  F  L  C  C  V  L  Y  K  I  *  M  *  D  S  F  I  N  L  E  I  V  D  H  I  V  </second_frame>
            <third_frame>   *  T  T  I  R  T  *  R  S  C  T  R  D  R   : R  G  L  V  *  Q  C  W  I  C  *  A  N  S  R  K  V  A  K  E  T  R  G  S  C  *  A  *  K  S  N  G  L  C  F  S  S  P   : V  A  G  R  I  Q  A  A  G  Y  T  F  W  V  *  T  R  *  K  Q  L  G  L  E  L  V  R  E  M  D  G  S  T  P  M  G  K  S  F  S  R  P  *  C  Q  R  W  S  H  A  *  *  K  *  I  S  R  T  C  K  R  D  E  E  P  G  K  S  C  W  E  E  T  S  N  Y  N  S  F  K  *  *  S  G  S  I  S  F  K  Q  *  L  K  I  K  *  K  G  S  S  I  A  L  *  W  L  Q  F  F  P  K  C  V  S  K  H  T  R  N  T  C  S  I  S  *  Q  T  *  V  Q  T  K  S  *  R  F  S  *  G  S  *  F  K  T  R  P  W  F  *  I  T  Q  Q  S  *  G  E  I  Y  S  L  *  *  T  R  K  T  E  I  V  S  A  W  *  R :   S  C  T  S  N  S  E  T  T  K  Q  N  H  Q  K  D  I  *  Y  A  E  A  F  E  G  E  V  Q  I  K  R  N  *  Y  Q  V  Y  S  N  C  F  T  T  G  C  *  L  V  F  R  Y  S  L  K  I  P  I  S  E  P  S  V  T  L  A  C  K  Y  R  E  P  S  *  R  G  V  M  V  C  C  P  R  Q  S  *  K  E  I  G  L  L  P  S  P  E  *  H  L  R  I  C  F  N  S  C  H  N  S  C  N  L  Y  N  S  A  L  F  S  L  P  L  L  P  P  S  V  K  K  R  M  N  L  L  F  V  P  L  F  L  S  *  K  L  G  N  L  V  S  L  I  A  N  F  F  V  V  C  C  T  R  S  E  C  R  I  H  S  L  I  *  R  L  *  T  I  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119111" stop="119155"/>
                    <exon start="119739" stop="119852"/>
                    <exon start="121038" stop="121560"/>
                    <exon start="122117" stop="122259"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEQQLEHDARVREIEEGWCDSVGSVEQIQEKLLKRQEAAAKRERAMAYALAHQWQAGSRQQATLSGFEPDKSSWGWNWLERWMAVRPWENRFLDLNVRDGVMPNENESAEPVNGMKNQVKVAGKKPATTTLSNDRVGPSHSSSNSKSNEKAAASLSDGCSSSPNVSASTQETPAALVNKPKSKPNREDLVEEASSKPVLGSRSHSNPKERSTPSDKQGKQRLSLPGSGLAPQTARQPSRTIKRTSSTQKPLKEKSKLNETDTKSTATVSQQAAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="120420" e_stop="120963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="120420" e_stop="120963" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120420" stop="120963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACTTGGGTCTTTTCTCTTCATTTTTTTTATATGCTATGTGTGTACTCAAGGACACATGGTGCCTCTAGTCAGAAATCAGGAACAACTATGGAAGAATAAAAATAGCTGTCAATACTGTGGTATCATTTTATGATACTGGTTAGGCAGGACATGGTGAGCCTTTAGCTTACTTAGGATATGACCTTAGATTGGAGGGTGTGGAGGTAAAAAATTCGGGTAGAAGGATAGTAGTAAATAGTTTCGCATCTTTTCCTCTCCTGATAGTATTATTATTATGATTTTTCAGTATTTATTATTGTTTTTCTATTTCCATATTTCTCATTCTTAGTTTTCTATAACTACTTGTCTCGTATGCCTCTATTTTCTTACTAGCTTGCAGTTGTTACTGCTTGTCTTCATAAATGTTGTGTTTTTGCTTTCCTTGAGCCAAGGGTCTATTGGAAGCAGCCTCTCTACCTGCCAAGGTAGGGGTAAGGTCTGTGACACTACCCTCCTCAGATCCCACACTTGGGTAAGTTGGTGTTGGTGTTGTTTGTTGGTTT</gDNA_template>
            <first_frame> L  L  G  S  F  L  F  I  F  F  I  C  Y  V  C  T  Q  G  H  M  V  P  L  V  R  N  Q  E  Q  L  W  K  N  K  N  S  C  Q  Y  C  G  I  I  L  *  Y  W  L  G  R  T  W  *  A  F  S  L  L  R  I  *  P  *  I  G  G  C  G  G  K  K  F  G  *  K  D  S  S  K  *  F  R  I  F  S  S  P  D  S  I  I  I  M  I  F  Q  Y  L  L  L  F  F  Y  F  H  I  S  H  S  *  F  S  I  T  T  C  L  V  C  L  Y  F  L  T  S  L  Q  L  L  L  L  V  F  I  N  V  V  F  L  L  S  L  S  Q  G  S  I  G  S  S  L  S  T  C  Q  G  R  G  K  V  C  D  T  T  L  L  R  S  H  T  W  V  S  W  C  W  C  C  L  L  V  </first_frame>
            <second_frame>  Y  L  G  L  F  S  S  F  F  L  Y  A  M  C  V  L  K  D  T  W  C  L  *  S  E  I  R  N  N  Y  G  R  I  K  I  A  V  N  T  V  V  S  F  Y  D  T  G  *  A  G  H  G  E  P  L  A  Y  L  G  Y  D  L  R  L  E  G  V  E  V  K  N  S  G  R  R  I  V  V  N  S  F  A  S  F  P  L  L  I  V  L  L  L  *  F  F  S  I  Y  Y  C  F  S  I  S  I  F  L  I  L  S  F  L  *  L  L  V  S  Y  A  S  I  F  L  L  A  C  S  C  Y  C  L  S  S  *  M  L  C  F  C  F  P  *  A  K  G  L  L  E  A  A  S  L  P  A  K  V  G  V  R  S  V  T  L  P  S  S  D  P  T  L  G  *  V  G  V  G  V  V  C  W  F </second_frame>
            <third_frame>   T  W  V  F  S  L  H  F  F  Y  M  L  C  V  Y  S  R  T  H  G  A  S  S  Q  K  S  G  T  T  M  E  E  *  K  *  L  S  I  L  W  Y  H  F  M  I  L  V  R  Q  D  M  V  S  L  *  L  T  *  D  M  T  L  D  W  R  V  W  R  *  K  I  R  V  E  G  *  *  *  I  V  S  H  L  F  L  S  *  *  Y  Y  Y  Y  D  F  S  V  F  I  I  V  F  L  F  P  Y  F  S  F  L  V  F  Y  N  Y  L  S  R  M  P  L  F  S  Y  *  L  A  V  V  T  A  C  L  H  K  C  C  V  F  A  F  L  E  P  R  V  Y  W  K  Q  P  L  Y  L  P  R  *  G  *  G  L  *  H  Y  P  P  Q  I  P  H  L  G  K  L  V  L  V  L  F  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120750" stop="120962"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSITTCLVCLYFLTSLQLLLLVFINVVFLLSLSQGSIGSSLSTCQGRGKVCDTTLLRSHTWVSWCWCCLLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="125362" PGL_stop="128334"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125362" e_stop="126518"/>
            <exon e_start="127713" e_stop="128334"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.997"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="125362" e_stop="126518" e_length="1157"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="126519" i_stop="127712" i_length="1194"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="127713" e_stop="128334" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125362" stop="126064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126033" stop="126518"/>
              <exon start="127713" stop="127831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127824" stop="128334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGTTGCTTCACTTCTTTCACTTCAATCTTTCTCCATTAATGGTGATTTTGCTGTAACAAGAAAATATGTTCAGATTATCTGTAGTTATCCCTTTTCTTACTCTTCTCATTTCTGTTCTTATTCTCTTCTTATTAGGACCAAAAATCCTCTTACCTCGACAAATCTCCATTTCTGTACCCGATGAACTCGACGATCTTTCACTTTTTCACAAAGCAATTGCTGCTGAAACCACTTTTCCGAAACACCCATCTCACAAAAAACTCCGTCTTGGATCCGCTACTGTTCGTCCACCAAAAATCGCATTTATGTTCTTAACAAATTCAGATTTGAAGTTTTCCCCAATTTGGGAGAAGTTCTTCAATGGTACTAAACCTGTAGATCCACATCTATACAATATCTACATACACGCTGACCCATCTATCAAGATTTCACCTTTAATGGGTGTTTTTAAAGATCGATTAATTCCGGCGAAGAGAACTCAACGTTCATCGCCGACACTCATATCTGCTGCCCGGAGATTACTTGCTCATGCTTTACTTGACGACCCATCAAACTCGTATTTCGCTCTTATCTCACAACATTGTATACCTTTACACTCTTTTAATTACTTTTACAATTTTTTACTTGATACCCAGAAATTGTCGAGGAAAATGGAGTTCCCTAGTTATATTGAGATTCTTGATGAATCTGATTCGTTATTAGATAGGTATAATGCAAGAGGGAAGAATATAATGGAACCTGAGGTGAAATTTGAGGAATTTAAAGTTGGTTCACAGTTTTTTGTGTTAACAAGAAAGCATTCTTTAATGGTGATCAAAGATAGGAAGTTATGGAGGAAATTTAGAAAACCATGTTTAAATGTTGAGTCTTGTTATCCAGAAGAGCATTATTTTCCTACTTTGTTATCAATGGAGGATCCTAATGGTTGTACCAAGTATACATTGACAAATGTGAATTGGACTGATACAGTTGATGGTCATCCACATACTTATCATCCTTCTGAGGTTTCTTCAAAGCTGATTTATGATCTTAGAGAGTCAAATTCTACATATTCATACATGTTTGCAAGGAAATTTTCACCTGATTGCTTGAACCCTTTGATGGAAATGGCAGAGTCAGTCATCTTCAAGGACTAGTTCTTGCTTGAGGCAATG : GTGAGATGATGAAGGAGTGAAGACAAATCAAAGGCAAAAACTTTGATGATGTTGTGAGGACAAAAAAAGATTGGTTTGTTGTGTAGGAGTAACACATGTGGAAATAAGGTATTTTTTTTGAAGGGTTTGTTGAAAAACAACAATGCCTTCAAACCAAGTAAATCCCAAAAGGGAAGTATCCAAAACTCAAAGTTTGGATGAGCTTTCAAAGAAAAGCAATGGAAAAGCTAGTTTTAGTAGTAGTAGTTGAGCTGGTAATTTGATGATGTAAAACATGTCTTAGTTGTAGCATCTAGTATTCATTTGGTGTTTGTGTGTGTTGCTCTCTATATTGTTCGGATTCTTCATGAATACCGTCCAGAGTGTGTCTGATCCTCTAAAAGCTATGCTTTTTTTAAAGATCTGATACGAATGTGACAACAATTTTGGAGGGTCGGAGCAATATGGGTTTTGCTTTGTACATAGATGGCAAGTATATATGTGTTTTAGGGAGAGATTAGCCTTGAACAAAATCAAGAAAAGTGCTAAACTCTATTGTTTTTTTTATTTTTCTACTACTTGTGGAAATGAATCATTGTATCAAAACATTTACTATCCAATGTAGTAAATGATTTTTAGAGAA</gDNA_template>
            <first_frame> F  C  C  F  T  S  F  T  S  I  F  L  H  *  W  *  F  C  C  N  K  K  I  C  S  D  Y  L  *  L  S  L  F  L  L  F  S  F  L  F  L  F  S  S  Y  *  D  Q  K  S  S  Y  L  D  K  S  P  F  L  Y  P  M  N  S  T  I  F  H  F  F  T  K  Q  L  L  L  K  P  L  F  R  N  T  H  L  T  K  N  S  V  L  D  P  L  L  F  V  H  Q  K  S  H  L  C  S  *  Q  I  Q  I  *  S  F  P  Q  F  G  R  S  S  S  M  V  L  N  L  *  I  H  I  Y  T  I  S  T  Y  T  L  T  H  L  S  R  F  H  L  *  W  V  F  L  K  I  D  *  F  R  R  R  E  L  N  V  H  R  R  H  S  Y  L  L  P  G  D  Y  L  L  M  L  Y  L  T  T  H  Q  T  R  I  S  L  L  S  H  N  I  V  Y  L  Y  T  L  L  I  T  F  T  I  F  Y  L  I  P  R  N  C  R  G  K  W  S  S  L  V  I  L  R  F  L  M  N  L  I  R  Y  *  I  G  I  M  Q  E  G  R  I  *  W  N  L  R  *  N  L  R  N  L  K  L  V  H  S  F  L  C  *  Q  E  S  I  L  *  W  *  S  K  I  G  S  Y  G  G  N  L  E  N  H  V  *  M  L  S  L  V  I  Q  K  S  I  I  F  L  L  C  Y  Q  W  R  I  L  M  V  V  P  S  I  H  *  Q  M  *  I  G  L  I  Q  L  M  V  I  H  I  L  I  I  L  L  R  F  L  Q  S  *  F  M  I  L  E  S  Q  I  L  H  I  H  T  C  L  Q  G  N  F  H  L  I  A  *  T  L  *  W  K  W  Q  S  Q  S  S  S  R  T  S  S  C  L  R  Q  W :   *  D  D  E  G  V  K  T  N  Q  R  Q  K  L  *  *  C  C  E  D  K  K  R  L  V  C  C  V  G  V  T  H  V  E  I  R  Y  F  F  *  R  V  C  *  K  T  T  M  P  S  N  Q  V  N  P  K  R  E  V  S  K  T  Q  S  L  D  E  L  S  K  K  S  N  G  K  A  S  F  S  S  S  S  *  A  G  N  L  M  M  *  N  M  S  *  L  *  H  L  V  F  I  W  C  L  C  V  L  L  S  I  L  F  G  F  F  M  N  T  V  Q  S  V  S  D  P  L  K  A  M  L  F  L  K  I  *  Y  E  C  D  N  N  F  G  G  S  E  Q  Y  G  F  C  F  V  H  R  W  Q  V  Y  M  C  F  R  E  R  L  A  L  N  K  I  K  K  S  A  K  L  Y  C  F  F  Y  F  S  T  T  C  G  N  E  S  L  Y  Q  N  I  Y  Y  P  M  *  *  M  I  F  R  E </first_frame>
            <second_frame>  S  V  A  S  L  L  S  L  Q  S  F  S  I  N  G  D  F  A  V  T  R  K  Y  V  Q  I  I  C  S  Y  P  F  S  Y  S  S  H  F  C  S  Y  S  L  L  I  R  T  K  N  P  L  T  S  T  N  L  H  F  C  T  R  *  T  R  R  S  F  T  F  S  Q  S  N  C  C  *  N  H  F  S  E  T  P  I  S  Q  K  T  P  S  W  I  R  Y  C  S  S  T  K  N  R  I  Y  V  L  N  K  F  R  F  E  V  F  P  N  L  G  E  V  L  Q  W  Y  *  T  C  R  S  T  S  I  Q  Y  L  H  T  R  *  P  I  Y  Q  D  F  T  F  N  G  C  F  *  R  S  I  N  S  G  E  E  N  S  T  F  I  A  D  T  H  I  C  C  P  E  I  T  C  S  C  F  T  *  R  P  I  K  L  V  F  R  S  Y  L  T  T  L  Y  T  F  T  L  F  *  L  L  L  Q  F  F  T  *  Y  P  E  I  V  E  E  N  G  V  P  *  L  Y  *  D  S  *  *  I  *  F  V  I  R  *  V  *  C  K  R  E  E  Y  N  G  T  *  G  E  I  *  G  I  *  S  W  F  T  V  F  C  V  N  K  K  A  F  F  N  G  D  Q  R  *  E  V  M  E  E  I  *  K  T  M  F  K  C  *  V  L  L  S  R  R  A  L  F  S  Y  F  V  I  N  G  G  S  *  W  L  Y  Q  V  Y  I  D  K  C  E  L  D  *  Y  S  *  W  S  S  T  Y  L  S  S  F  *  G  F  F  K  A  D  L  *  S  *  R  V  K  F  Y  I  F  I  H  V  C  K  E  I  F  T  *  L  L  E  P  F  D  G  N  G  R  V  S  H  L  Q  G  L  V  L  A  *  G  N   : G  E  M  M  K  E  *  R  Q  I  K  G  K  N  F  D  D  V  V  R  T  K  K  D  W  F  V  V  *  E  *  H  M  W  K  *  G  I  F  F  E  G  F  V  E  K  Q  Q  C  L  Q  T  K  *  I  P  K  G  K  Y  P  K  L  K  V  W  M  S  F  Q  R  K  A  M  E  K  L  V  L  V  V  V  V  E  L  V  I  *  *  C  K  T  C  L  S  C  S  I  *  Y  S  F  G  V  C  V  C  C  S  L  Y  C  S  D  S  S  *  I  P  S  R  V  C  L  I  L  *  K  L  C  F  F  *  R  S  D  T  N  V  T  T  I  L  E  G  R  S  N  M  G  F  A  L  Y  I  D  G  K  Y  I  C  V  L  G  R  D  *  P  *  T  K  S  R  K  V  L  N  S  I  V  F  F  I  F  L  L  L  V  E  M  N  H  C  I  K  T  F  T  I  Q  C  S  K  *  F  L  E   </second_frame>
            <third_frame>   L  L  L  H  F  F  H  F  N  L  S  P  L  M  V  I  L  L  *  Q  E  N  M  F  R  L  S  V  V  I  P  F  L  T  L  L  I  S  V  L  I  L  F  L  L  G  P  K  I  L  L  P  R  Q  I  S  I  S  V  P  D  E  L  D  D  L  S  L  F  H  K  A  I  A  A  E  T  T  F  P  K  H  P  S  H  K  K  L  R  L  G  S  A  T  V  R  P  P  K  I  A  F  M  F  L  T  N  S  D  L  K  F  S  P  I  W  E  K  F  F  N  G  T  K  P  V  D  P  H  L  Y  N  I  Y  I  H  A  D  P  S  I  K  I  S  P  L  M  G  V  F  K  D  R  L  I  P  A  K  R  T  Q  R  S  S  P  T  L  I  S  A  A  R  R  L  L  A  H  A  L  L  D  D  P  S  N  S  Y  F  A  L  I  S  Q  H  C  I  P  L  H  S  F  N  Y  F  Y  N  F  L  L  D  T  Q  K  L  S  R  K  M  E  F  P  S  Y  I  E  I  L  D  E  S  D  S  L  L  D  R  Y  N  A  R  G  K  N  I  M  E  P  E  V  K  F  E  E  F  K  V  G  S  Q  F  F  V  L  T  R  K  H  S  L  M  V  I  K  D  R  K  L  W  R  K  F  R  K  P  C  L  N  V  E  S  C  Y  P  E  E  H  Y  F  P  T  L  L  S  M  E  D  P  N  G  C  T  K  Y  T  L  T  N  V  N  W  T  D  T  V  D  G  H  P  H  T  Y  H  P  S  E  V  S  S  K  L  I  Y  D  L  R  E  S  N  S  T  Y  S  Y  M  F  A  R  K  F  S  P  D  C  L  N  P  L  M  E  M  A  E  S  V  I  F  K  D  *  F  L  L  E  A  M  :  V  R  *  *  R  S  E  D  K  S  K  A  K  T  L  M  M  L  *  G  Q  K  K  I  G  L  L  C  R  S  N  T  C  G  N  K  V  F  F  L  K  G  L  L  K  N  N  N  A  F  K  P  S  K  S  Q  K  G  S  I  Q  N  S  K  F  G  *  A  F  K  E  K  Q  W  K  S  *  F  *  *  *  *  L  S  W  *  F  D  D  V  K  H  V  L  V  V  A  S  S  I  H  L  V  F  V  C  V  A  L  Y  I  V  R  I  L  H  E  Y  R  P  E  C  V  *  S  S  K  S  Y  A  F  F  K  D  L  I  R  M  *  Q  Q  F  W  R  V  G  A  I  W  V  L  L  C  T  *  M  A  S  I  Y  V  F  *  G  E  I  S  L  E  Q  N  Q  E  K  C  *  T  L  L  F  F  L  F  F  Y  Y  L  W  K  *  I  I  V  S  K  H  L  L  S  N  V  V  N  D  F  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125421" stop="126500"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QENMFRLSVVIPFLTLLISVLILFLLGPKILLPRQISISVPDELDDLSLFHKAIAAETTFPKHPSHKKLRLGSATVRPPKIAFMFLTNSDLKFSPIWEKFFNGTKPVDPHLYNIYIHADPSIKISPLMGVFKDRLIPAKRTQRSSPTLISAARRLLAHALLDDPSNSYFALISQHCIPLHSFNYFYNFLLDTQKLSRKMEFPSYIEILDESDSLLDRYNARGKNIMEPEVKFEEFKVGSQFFVLTRKHSLMVIKDRKLWRKFRKPCLNVESCYPEEHYFPTLLSMEDPNGCTKYTLTNVNWTDTVDGHPHTYHPSEVSSKLIYDLRESNSTYSYMFARKFSPDCLNPLMEMAESVIFKD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128119" stop="128316"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YECDNNFGGSEQYGFCFVHRWQVYMCFRERLALNKIKKSAKLYCFFYFSTTCGNESLYQNIYYPM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="132219" PGL_stop="135045"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132219" e_stop="132413"/>
            <exon e_start="134004" e_stop="135045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132219" e_stop="132413" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="132414" i_stop="134003" i_length="1590"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="134004" e_stop="135045" e_length="1042"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132219" stop="132413"/>
              <exon start="134004" stop="135045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318659" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAAGGAGGAGAAGAGAGCGGCACACGTAGTTACGCTTCAGACCTCAAAATTTCGACTGAAAAAGCAGTTACACAAAGAGAAGAGAAGAAGAACGAAAACAAATAACGAAGAAAATTATGGGATCGACTGATTCAGAATTGGATTCAATTTTTCAGGATAACAAGCGTCATCGTAATCGTCTTGTTCCGATCG : GTGGCTCAGCCGCTACGATGTGGTAAATCCGCAGTCTCATCTGCAAGAACAGCCCAACGCAATGTAGTAGCATGGCTCTACCACAAGGCATTAAGCTTACAATTGAACCAGCAACTCTTTTTCAAGTTTCCTCGTTCATTTGCTCCCCACCTTCCTAAATTTGCTTTCAGTTTTCAAGTTTTACCCTTTAGGCATGTTTTGAACATTATATAGGACTTGTTTCAAGGTACAGGATGTTACAGATTACTCTAGGCGTATATGTCAATGATGGTAATTCAGCCTCGTTAATTGGATCAATAGCTGTTATTAACTTATGCTATATATATAACTTTATAGGTTGGGCTTGAGCTTAAATGTGATAACCAACTTCTCCTATTTCCAGAAAAAGCAATAATGCAACTTTGCAAAACCTTGTCTGATTAACTGTATGGAGTGTTCGTATATGTTTATGATTATAAGGCGAGGTCATTTGGTCTTCTGTTATGAATTCTTGAGAAGTGATGCATTTTCTGCTGCCTTACTTTCCTGTGAGATATCGTTCATGTTAATCTTCCCAATCCCGGTTGATCCTCCACTGTTTCAATTTTTTGGCTAAATTGTCTCTGAACACTCTCAACTCATATTCTGTTTGTGCAATTTATGACTTTGCGAAATTTCAGGTGCATTTCTCACTGCAGGAGTGCTCACTGCCGGACTCATTAGTTTCAAGCGGGGAAATTCTCAATTAGGTCAGCAACTAATGAGAGCTAGAGTTCTTGTTCAAGGTGGTACAGTCGCACTGATGGTTGGTTCAGCATATTACTATGGAGATAATTTCAAGCGCGCTGGATGACTGACTGACTGACTACCAAACGACTCCCTCATTCGTCTGTCATGAGTTGATTTTCTGCTGGGAAAAAATGATTCCATATCTTGCTAGGATGCAGTTTCTTTACATGGCTGTCATTGCCACCCCAATCACATAAGAAAGAAAATTAGAGGAAAAAGTAATAACAGAGTGAAACATAATGCTAATGTTTATGTATTTTTCAAAATTTATGGG</gDNA_template>
            <first_frame> W  K  G  G  E  E  S  G  T  R  S  Y  A  S  D  L  K  I  S  T  E  K  A  V  T  Q  R  E  E  K  K  N  E  N  K  *  R  R  K  L  W  D  R  L  I  Q  N  W  I  Q  F  F  R  I  T  S  V  I  V  I  V  L  F  R  S  :  V  A  Q  P  L  R  C  G  K  S  A  V  S  S  A  R  T  A  Q  R  N  V  V  A  W  L  Y  H  K  A  L  S  L  Q  L  N  Q  Q  L  F  F  K  F  P  R  S  F  A  P  H  L  P  K  F  A  F  S  F  Q  V  L  P  F  R  H  V  L  N  I  I  *  D  L  F  Q  G  T  G  C  Y  R  L  L  *  A  Y  M  S  M  M  V  I  Q  P  R  *  L  D  Q  *  L  L  L  T  Y  A  I  Y  I  T  L  *  V  G  L  E  L  K  C  D  N  Q  L  L  L  F  P  E  K  A  I  M  Q  L  C  K  T  L  S  D  *  L  Y  G  V  F  V  Y  V  Y  D  Y  K  A  R  S  F  G  L  L  L  *  I  L  E  K  *  C  I  F  C  C  L  T  F  L  *  D  I  V  H  V  N  L  P  N  P  G  *  S  S  T  V  S  I  F  W  L  N  C  L  *  T  L  S  T  H  I  L  F  V  Q  F  M  T  L  R  N  F  R  C  I  S  H  C  R  S  A  H  C  R  T  H  *  F  Q  A  G  K  F  S  I  R  S  A  T  N  E  S  *  S  S  C  S  R  W  Y  S  R  T  D  G  W  F  S  I  L  L  W  R  *  F  Q  A  R  W  M  T  D  *  L  T  T  K  R  L  P  H  S  S  V  M  S  *  F  S  A  G  K  K  *  F  H  I  L  L  G  C  S  F  F  T  W  L  S  L  P  P  Q  S  H  K  K  E  N  *  R  K  K  *  *  Q  S  E  T  *  C  *  C  L  C  I  F  Q  N  L  W  </first_frame>
            <second_frame>  G  K  E  E  K  R  A  A  H  V  V  T  L  Q  T  S  K  F  R  L  K  K  Q  L  H  K  E  K  R  R  R  T  K  T  N  N  E  E  N  Y  G  I  D  *  F  R  I  G  F  N  F  S  G  *  Q  A  S  S  *  S  S  C  S  D  R :   W  L  S  R  Y  D  V  V  N  P  Q  S  H  L  Q  E  Q  P  N  A  M  *  *  H  G  S  T  T  R  H  *  A  Y  N  *  T  S  N  S  F  S  S  F  L  V  H  L  L  P  T  F  L  N  L  L  S  V  F  K  F  Y  P  L  G  M  F  *  T  L  Y  R  T  C  F  K  V  Q  D  V  T  D  Y  S  R  R  I  C  Q  *  W  *  F  S  L  V  N  W  I  N  S  C  Y  *  L  M  L  Y  I  *  L  Y  R  L  G  L  S  L  N  V  I  T  N  F  S  Y  F  Q  K  K  Q  *  C  N  F  A  K  P  C  L  I  N  C  M  E  C  S  Y  M  F  M  I  I  R  R  G  H  L  V  F  C  Y  E  F  L  R  S  D  A  F  S  A  A  L  L  S  C  E  I  S  F  M  L  I  F  P  I  P  V  D  P  P  L  F  Q  F  F  G  *  I  V  S  E  H  S  Q  L  I  F  C  L  C  N  L  *  L  C  E  I  S  G  A  F  L  T  A  G  V  L  T  A  G  L  I  S  F  K  R  G  N  S  Q  L  G  Q  Q  L  M  R  A  R  V  L  V  Q  G  G  T  V  A  L  M  V  G  S  A  Y  Y  Y  G  D  N  F  K  R  A  G  *  L  T  D  *  L  P  N  D  S  L  I  R  L  S  *  V  D  F  L  L  G  K  N  D  S  I  S  C  *  D  A  V  S  L  H  G  C  H  C  H  P  N  H  I  R  K  K  I  R  G  K  S  N  N  R  V  K  H  N  A  N  V  Y  V  F  F  K  I  Y  G </second_frame>
            <third_frame>   E  R  R  R  R  E  R  H  T  *  L  R  F  R  P  Q  N  F  D  *  K  S  S  Y  T  K  R  R  E  E  E  R  K  Q  I  T  K  K  I  M  G  S  T  D  S  E  L  D  S  I  F  Q  D  N  K  R  H  R  N  R  L  V  P  I   : G  G  S  A  A  T  M  W  *  I  R  S  L  I  C  K  N  S  P  T  Q  C  S  S  M  A  L  P  Q  G  I  K  L  T  I  E  P  A  T  L  F  Q  V  S  S  F  I  C  S  P  P  S  *  I  C  F  Q  F  S  S  F  T  L  *  A  C  F  E  H  Y  I  G  L  V  S  R  Y  R  M  L  Q  I  T  L  G  V  Y  V  N  D  G  N  S  A  S  L  I  G  S  I  A  V  I  N  L  C  Y  I  Y  N  F  I  G  W  A  *  A  *  M  *  *  P  T  S  P  I  S  R  K  S  N  N  A  T  L  Q  N  L  V  *  L  T  V  W  S  V  R  I  C  L  *  L  *  G  E  V  I  W  S  S  V  M  N  S  *  E  V  M  H  F  L  L  P  Y  F  P  V  R  Y  R  S  C  *  S  S  Q  S  R  L  I  L  H  C  F  N  F  L  A  K  L  S  L  N  T  L  N  S  Y  S  V  C  A  I  Y  D  F  A  K  F  Q  V  H  F  S  L  Q  E  C  S  L  P  D  S  L  V  S  S  G  E  I  L  N  *  V  S  N  *  *  E  L  E  F  L  F  K  V  V  Q  S  H  *  W  L  V  Q  H  I  T  M  E  I  I  S  S  A  L  D  D  *  L  T  D  Y  Q  T  T  P  S  F  V  C  H  E  L  I  F  C  W  E  K  M  I  P  Y  L  A  R  M  Q  F  L  Y  M  A  V  I  A  T  P  I  T  *  E  R  K  L  E  E  K  V  I  T  E  *  N  I  M  L  M  F  M  Y  F  S  K  F  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132327" stop="132413"/>
                    <exon start="134004" stop="134216"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRKLWDRLIQNWIQFFRITSVIVIVLFRSVAQPLRCGKSAVSSARTAQRNVVAWLYHKALSLQLNQQLFFKFPRSFAPHLPKFAFSFQVLPFRHVLNII*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134398" stop="134598"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNFAKPCLINCMECSYMFMIIRRGHLVFCYEFLRSDAFSAALLSCEISFMLIFPIPVDPPLFQFFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="135901" PGL_stop="139878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135901" e_stop="136025"/>
            <exon e_start="137289" e_stop="137359"/>
            <exon e_start="137537" e_stop="137616"/>
            <exon e_start="138494" e_stop="138608"/>
            <exon e_start="138821" e_stop="138873"/>
            <exon e_start="139303" e_stop="139431"/>
            <exon e_start="139512" e_stop="139878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.957" e_score="0.960"/>
          <exon-intron don_prob="0.199" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.642" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="135901" e_stop="136025" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.957">
            <gDNA_intron_boundary i_start="136026" i_stop="137288" i_length="1263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="137289" e_stop="137359" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.199" acc_prob="0.997">
            <gDNA_intron_boundary i_start="137360" i_stop="137536" i_length="177"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="137537" e_stop="137616" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.937" acc_prob="0.999">
            <gDNA_intron_boundary i_start="137617" i_stop="138493" i_length="877"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="138494" e_stop="138608" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="138609" i_stop="138820" i_length="212"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="138821" e_stop="138873" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="138874" i_stop="139302" i_length="429"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="139303" e_stop="139431" e_length="129"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.642">
            <gDNA_intron_boundary i_start="139432" i_stop="139511" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="139512" e_stop="139878" e_length="367"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135901" stop="136025"/>
              <exon start="137289" stop="137359"/>
              <exon start="137537" stop="137616"/>
              <exon start="138494" stop="138608"/>
              <exon start="138821" stop="138873"/>
              <exon start="139303" stop="139431"/>
              <exon start="139512" stop="139878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACATGGTAGGTAGTGGGTTACCTTTTTTGTTGAGCTACAGCCATGGAAGCTATTTTGAAGAAGAAGACAAAGTGCGAAGGACAATTTCTCAATTTTTTCAGAAGAAAAAAAAAAAGCCGAAAG : ATTCTGAGGATCAATAGTTAGTTGAAAATGTCTTCTCCAAGCAAAAGAAGAGATATGGATGTTATGAAATT : GATGATGAGTGATTATAAGGTGGAGACAATTAATGATGGAATTACGGAGTTCAACGTGGAATTTCACGGCCCAAAAGAAA : GCCTTTATGAAGGTGGAGTTTGGAAAATAAGGGTCGAGTTGCCAGATGCCTACCCTTACAAGTCTCCTTCCATCGGGTTTCTCAACAAAATATTCCACCCTAATGTTGATGAGCT : GTCTGGCTCTGTATGTTTGGATGTCATCAATCAGTCATGGAGCCCTATGTTTG : ATCTCTTAAACGTTTTTGAGGTTTTCCTGCCACAGCTTTTGCTATATCCGAATCCTTCGGATCCATTAAATGGTGATGCAGCCTCACTGATGATGAAAGACAAGAATCAATATGAGCAAAAAGTGAAAG : AGTACTGTGAACGGTACGCAAAGAAGGAGAATGTCGTTGGCACACCAAAAGATGATAGTGATGATGAGATTAGTGAAGAGGAGTTCAGTGGACAAAGCGAAAGCGATGATGAAGTTGTTGGACATGCTGATCCTTGAGTGAATAAACTAGGATCCTAAAATGGAGATCATGTTTTTAGTTCATTTTTCTCCTTACATGTAATATCCGATTCGTCGTCGCATGTAAATCTAGGTGCCAAAGATAGTTTAGGGACAATATACATAACCTACAGATGTGTGATGAATCTCAGTCTGTGTAGAAACTCTCTACCTTATGGTCAATGTAACTTACCAATATATGTGTTAAAAATTCAGGTTCTTGTTTTAAA</gDNA_template>
            <first_frame> *  H  G  R  *  W  V  T  F  F  V  E  L  Q  P  W  K  L  F  *  R  R  R  Q  S  A  K  D  N  F  S  I  F  S  E  E  K  K  K  A  E  R :   F  *  G  S  I  V  S  *  K  C  L  L  Q  A  K  E  E  I  W  M  L  *  N   : *  *  *  V  I  I  R  W  R  Q  L  M  M  E  L  R  S  S  T  W  N  F  T  A  Q  K  K  :  A  F  M  K  V  E  F  G  K  *  G  S  S  C  Q  M  P  T  L  T  S  L  L  P  S  G  F  S  T  K  Y  S  T  L  M  L  M  S   : C  L  A  L  Y  V  W  M  S  S  I  S  H  G  A  L  C  L  :  I  S  *  T  F  L  R  F  S  C  H  S  F  C  Y  I  R  I  L  R  I  H  *  M  V  M  Q  P  H  *  *  *  K  T  R  I  N  M  S  K  K  *  K  :  S  T  V  N  G  T  Q  R  R  R  M  S  L  A  H  Q  K  M  I  V  M  M  R  L  V  K  R  S  S  V  D  K  A  K  A  M  M  K  L  L  D  M  L  I  L  E  *  I  N  *  D  P  K  M  E  I  M  F  L  V  H  F  S  P  Y  M  *  Y  P  I  R  R  R  M  *  I  *  V  P  K  I  V  *  G  Q  Y  T  *  P  T  D  V  *  *  I  S  V  C  V  E  T  L  Y  L  M  V  N  V  T  Y  Q  Y  M  C  *  K  F  R  F  L  F  *  </first_frame>
            <second_frame>  D  M  V  G  S  G  L  P  F  L  L  S  Y  S  H  G  S  Y  F  E  E  E  D  K  V  R  R  T  I  S  Q  F  F  Q  K  K  K  K  K  P  K   : D  S  E  D  Q  *  L  V  E  N  V  F  S  K  Q  K  K  R  Y  G  C  Y  E  I  :  D  D  E  *  L  *  G  G  D  N  *  *  W  N  Y  G  V  Q  R  G  I  S  R  P  K  R  K :   P  L  *  R  W  S  L  E  N  K  G  R  V  A  R  C  L  P  L  Q  V  S  F  H  R  V  S  Q  Q  N  I  P  P  *  C  *  *  A  :  V  W  L  C  M  F  G  C  H  Q  S  V  M  E  P  Y  V  * :   S  L  K  R  F  *  G  F  P  A  T  A  F  A  I  S  E  S  F  G  S  I  K  W  *  C  S  L  T  D  D  E  R  Q  E  S  I  *  A  K  S  E  R :   V  L  *  T  V  R  K  E  G  E  C  R  W  H  T  K  R  *  *  *  *  *  D  *  *  R  G  V  Q  W  T  K  R  K  R  *  *  S  C  W  T  C  *  S  L  S  E  *  T  R  I  L  K  W  R  S  C  F  *  F  I  F  L  L  T  C  N  I  R  F  V  V  A  C  K  S  R  C  Q  R  *  F  R  D  N  I  H  N  L  Q  M  C  D  E  S  Q  S  V  *  K  L  S  T  L  W  S  M  *  L  T  N  I  C  V  K  N  S  G  S  C  F  K </second_frame>
            <third_frame>   T  W  *  V  V  G  Y  L  F  C  *  A  T  A  M  E  A  I  L  K  K  K  T  K  C  E  G  Q  F  L  N  F  F  R  R  K  K  K  S  R  K  :  I  L  R  I  N  S  *  L  K  M  S  S  P  S  K  R  R  D  M  D  V  M  K  L :   M  M  S  D  Y  K  V  E  T  I  N  D  G  I  T  E  F  N  V  E  F  H  G  P  K  E   : S  L  Y  E  G  G  V  W  K  I  R  V  E  L  P  D  A  Y  P  Y  K  S  P  S  I  G  F  L  N  K  I  F  H  P  N  V  D  E  L :   S  G  S  V  C  L  D  V  I  N  Q  S  W  S  P  M  F   : D  L  L  N  V  F  E  V  F  L  P  Q  L  L  L  Y  P  N  P  S  D  P  L  N  G  D  A  A  S  L  M  M  K  D  K  N  Q  Y  E  Q  K  V  K   : E  Y  C  E  R  Y  A  K  K  E  N  V  V  G  T  P  K  D  D  S  D  D  E  I  S  E  E  E  F  S  G  Q  S  E  S  D  D  E  V  V  G  H  A  D  P  *  V  N  K  L  G  S  *  N  G  D  H  V  F  S  S  F  F  S  L  H  V  I  S  D  S  S  S  H  V  N  L  G  A  K  D  S  L  G  T  I  Y  I  T  Y  R  C  V  M  N  L  S  L  C  R  N  S  L  P  Y  G  Q  C  N  L  P  I  Y  V  L  K  I  Q  V  L  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137310" stop="137359"/>
                    <exon start="137537" stop="137616"/>
                    <exon start="138494" stop="138608"/>
                    <exon start="138821" stop="138873"/>
                    <exon start="139303" stop="139431"/>
                    <exon start="139512" stop="139648"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKMSSPSKRRDMDVMKLMMSDYKVETINDGITEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFLNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNPSDPLNGDAASLMMKDKNQYEQKVKEYCERYAKKENVVGTPKDDSDDEISEEEFSGQSESDDEVVGHADP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0323E19.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="139670" stop="139876"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGDHVFSSFFSLHVISDSSSHVNLGAKDSLGTIYITYRCVMNLSLCRNSLPYGQCNLPIYVLKIQVLVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 45 chains have been computed
$ 
$ memory statistics:
$ 237576 bytes spliced alignments in total
$ 35 spliced alignments have been stored
$ 6787 bytes was the average size of a spliced alignment
$ 35624 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1484 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 48 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 02:45:31
-->
