<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 06:05:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395605" ref_strand="+" ref_description="SGN-E395605 [TUS-16-H14](-)">
      <seq>tatcttacctcgcatcatatggtttcgattctccacattgatatgtaatcccctccccctatacctaccccgatcgttttttttttcttgaaaaaaatcaatatataacctcttgtaccaaattgttggaaaattttgaaacttgttataatatgagttatatattgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="7922" stop="7151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7622" g_stop="7451" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E395605" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7622" e_stop="7451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTGAACTCGCATCATATCGTTTCGATTCTCCACATTGTTATGTAATCCCCTCCCCCTATACCTACCCCGATCGTTTTTTTTTTCTTGAAAAAAATCAATATATAACCTCTTGTACCAAATTGTTGGAAAATTTTGAAACTTGTTATAATATGAGTTATATATTGCTAAA</genome_strand>
        <mrna_strand>TATCTTACCTCGCATCATATGGTTTCGATTCTCCACATTGATATGTAATCCCCTCCCCCTATACCTACCCCGATCGTTTTTTTTTTCTTGAAAAAAATCAATATATAACCTCTTGTACCAAATTGTTGGAAAATTTTGAAACTTGTTATAATATGAGTTATATATTGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207924" ref_strand="+" ref_description="SGN-E207924 [cLEC-34-B21]">
      <seq>caagccgtagcattccgatccgacagtgatctttccgctgtagaaaactgtgaattcattggcaatcaagacaccctatacgcccacgctttgcgccaatactacaagtcctgccgtatccaaggtaatgtagacttcattttcggaaactcagcttctttctttcaagactgtgacatcctaatagcacctcgacaactccgtcctgaaaagggagagacgaatgctgtgactgctcatggcaggatagaccctgcacaatcaactggtttcgtcttccaaaattgtttgatcaatggaactgataaatacatgaccttgtactacaacaaacccaaagtccacaaaaattttctgggaagaccatggaaggagtattctcggaccgtgtttctagattgtactttagaggctcttatatcgcctaacggatggttgccttggagtggtgatttcgcgttgaagactctatactacggagaatatagaaatactggtgccggagctaatacagcaggacgagtgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="8615" stop="7487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8315" g_stop="7787" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E207924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8315" e_stop="7787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCCGTAGCATTCCGATCCGACAGTGATCTTTCCGCTGTAGAAAACTGTGAATTCATTGGCAATCAAGACACCCTATACGCCCACGCTTTGCGCCAATACTACAAGTCCTGCCGTATCCAAGGTAATGTAGACTTCATTTTCGGAAACTCAGCTTCTTTCTTTCAAGACTGTGACATCCTAATAGCACCTCGACAACTCCGTCCTGAAAAGGGAGAGACGAATGCTGTGACTGCTCATGGCAGGATAGACCCTGCACAATCAACTGGTTTCGTCTTCCAAAATTGTTTGATCAATGGAACTGATAAATACATGACCTTGTACTACAACAAACCCAAAGTCCACAAAAATTTTCTGGGAAGACCATGGAAGGAGTATTCTCGGACCGTGTTTCTAGATTGTACTTTAGAGGCTCTTATATCGCCTAACGGATGGTTGCCTTGGAGTGGTGATTTCGCGTTGAAGACTCTATACTACGGAGAATATAGAAATACTGGTGCCGGAGCTAATACAGCAGGACGAGTGTCGT</genome_strand>
        <mrna_strand>CAAGCCGTAGCATTCCGATCCGACAGTGATCTTTCCGCTGTAGAAAACTGTGAATTCATTGGCAATCAAGACACCCTATACGCCCACGCTTTGCGCCAATACTACAAGTCCTGCCGTATCCAAGGTAATGTAGACTTCATTTTCGGAAACTCAGCTTCTTTCTTTCAAGACTGTGACATCCTAATAGCACCTCGACAACTCCGTCCTGAAAAGGGAGAGACGAATGCTGTGACTGCTCATGGCAGGATAGACCCTGCACAATCAACTGGTTTCGTCTTCCAAAATTGTTTGATCAATGGAACTGATAAATACATGACCTTGTACTACAACAAACCCAAAGTCCACAAAAATTTTCTGGGAAGACCATGGAAGGAGTATTCTCGGACCGTGTTTCTAGATTGTACTTTAGAGGCTCTTATATCGCCTAACGGATGGTTGCCTTGGAGTGGTGATTTCGCGTTGAAGACTCTATACTACGGAGAATATAGAAATACTGGTGCCGGAGCTAATACAGCAGGACGAGTGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205803" ref_strand="+" ref_description="SGN-E205803 [cLEC-20-K9]">
      <seq>aggaaggaggatgtgactataagacggtgcacgaggcggtgaatgctgcaccggagaaggagcaaacccggaagtttgtgatatggatcaaatccgggttgtatgaggagaaggttcgggtcgggttggagaagatgaatgtggtgtttttgggtgatggaatgggtaaaactgtcattacgggttcgttgagtgttggtcttgctggtgttactacttatgagactgcaactgttggagttgttggtgatggattcatggctagtggtatcaccttccaaaacacagccggtccggatgctcaccaagccgtagcattccgatccgacagtgatctttccgctgtagaaaactgtgaattcattggcaatcaagacaccctatacgcccacgctttgcgccaatactacaagtcctgccgtatccaaggtaatgtagacttcattttcggaaactcagctcctttctttcaagactgtgacatcctaatagcacctcgacaactccgtcctgaaaagggagagacgaatgctgtgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="9484" stop="7782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9184" g_stop="8948" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8947" i_stop="8384" i_length="564">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8383" g_stop="8082" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="539" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E205803" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9184" e_stop="8948"/>
          <exon e_start="8383" e_stop="8082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGGAGGATGTGACTATAAGACGGTGCAGGAGGCGGTGAATGCTGCACCGGAGAAGGAGCAAACCCGGAAGTTTGTGATATGGATCAAATCCGGGTTGTATGAGGAGAAGGTTCGGGTCGGGTTGGAGAAGATGAATGTGGTGTTTTTGGGTGATGGAATGGGTAAAACTGTCATTACGGGTTCGTTGAGTGTTGGTCTTGCTGGTGTTACTACTTATGAGACTGCAACTGTTGGTAAGTTTATTTGATTGAATTTGAATTTTAATACTTATGTTATGTTTATTACTATCTTATTCGTTATCATTACCTATGTTTACTTCATTTAGCATATTAGTATTTGTTATTGAACCTGTTATATGTTTTACCTTAGTCGAGGGTCTCGAGGAAACAATCCACATCAATCCCACTTGTATGGAATTACACTGATCATTGAGTAATATGACACCGTGCATTCATTACAAACCGTGGGATTGATTTTTCGTATGAAAAACGGAAGGCATAGTCCTTGCTCCATAGAAAACGCTAAGTTAGAATTTATTGTCGATGGGTTTGGAATGAGTATAATCTATACACATGTATACAATGAGCATTAACTTTGTGGTATGCGTATCCATAGATGGAGCGAAAAGCAATGGGCCTAGTGAACCTTTTTTGATCCGTCTCGGGATCATAGGGGTCTGTTAGAAGTGCAAAATGTTTGCATTTGTCATAAAACCTGCATTTGCTATTTGTTGTTGAAGACATACGGAGGACGTTTGTAGATTCGAGTCGTTCTAATGTTTAGTATTTGTAAAACAGGAGTTGTTGGTGATGGATTCATGGCTAGTGGTATCACCTTCCAAAACACAGCCGGTCCGGATGCTCACCAAGCCGTAGCATTCCGATCCGACAGTGATCTTTCCGCTGTAGAAAACTGTGAATTCATTGGCAATCAAGACACCCTATACGCCCACGCTTTGCGCCAATACTACAAGTCCTGCCGTATCCAAGGTAATGTAGACTTCATTTTCGGAAACTCAGCTTCTTTCTTTCAAGACTGTGACATCCTAATAGCACCTCGACAACTCCGTCCTGAAAAGGGAGAGACGAATGCTGTGACT</genome_strand>
        <mrna_strand>AGGAAGGAGGATGTGACTATAAGACGGTGCACGAGGCGGTGAATGCTGCACCGGAGAAGGAGCAAACCCGGAAGTTTGTGATATGGATCAAATCCGGGTTGTATGAGGAGAAGGTTCGGGTCGGGTTGGAGAAGATGAATGTGGTGTTTTTGGGTGATGGAATGGGTAAAACTGTCATTACGGGTTCGTTGAGTGTTGGTCTTGCTGGTGTTACTACTTATGAGACTGCAACTGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTGGTGATGGATTCATGGCTAGTGGTATCACCTTCCAAAACACAGCCGGTCCGGATGCTCACCAAGCCGTAGCATTCCGATCCGACAGTGATCTTTCCGCTGTAGAAAACTGTGAATTCATTGGCAATCAAGACACCCTATACGCCCACGCTTTGCGCCAATACTACAAGTCCTGCCGTATCCAAGGTAATGTAGACTTCATTTTCGGAAACTCAGCTCCTTTCTTTCAAGACTGTGACATCCTAATAGCACCTCGACAACTCCGTCCTGAAAAGGGAGAGACGAATGCTGTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395606" ref_strand="+" ref_description="SGN-E395606 [TUS-16-H14]">
      <seq>aaggaaggaggatgtgactataagacggtgcaggaggcggtgaatgctgcaccggagaaggagcaaacccggaagtttgtgatatggatcaaatccgggttgtatgaggagaaggttcgggtcgggttggagaagatgaatgtggtgtttttgggtgatggaatgggtaaaactgtcattacgggttcgttgagtgttggtcttgctggtgttactacttatgagactgcaactgttggagttgttggtgatggattcatggctagtggtatcaccttccaaaacacagccggtccggatgctcaccaagccgtagcattccgatccgacagtgatctttccgctgtagaaaactgtgaattcattggcaatcaagacaccctatacgcccacgctttgcgccaatactacaagtcctgccgtatccaaggtaatgtagacttcattttcggaaactcagcttctttctttcaagactgtgacatcctaatagcacctcgacaactccttcctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="9485" stop="7805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9185" g_stop="8948" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8947" i_stop="8384" i_length="564">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8383" g_stop="8105" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="517" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E395606" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9185" e_stop="8948"/>
          <exon e_start="8383" e_stop="8105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGGAGGATGTGACTATAAGACGGTGCAGGAGGCGGTGAATGCTGCACCGGAGAAGGAGCAAACCCGGAAGTTTGTGATATGGATCAAATCCGGGTTGTATGAGGAGAAGGTTCGGGTCGGGTTGGAGAAGATGAATGTGGTGTTTTTGGGTGATGGAATGGGTAAAACTGTCATTACGGGTTCGTTGAGTGTTGGTCTTGCTGGTGTTACTACTTATGAGACTGCAACTGTTGGTAAGTTTATTTGATTGAATTTGAATTTTAATACTTATGTTATGTTTATTACTATCTTATTCGTTATCATTACCTATGTTTACTTCATTTAGCATATTAGTATTTGTTATTGAACCTGTTATATGTTTTACCTTAGTCGAGGGTCTCGAGGAAACAATCCACATCAATCCCACTTGTATGGAATTACACTGATCATTGAGTAATATGACACCGTGCATTCATTACAAACCGTGGGATTGATTTTTCGTATGAAAAACGGAAGGCATAGTCCTTGCTCCATAGAAAACGCTAAGTTAGAATTTATTGTCGATGGGTTTGGAATGAGTATAATCTATACACATGTATACAATGAGCATTAACTTTGTGGTATGCGTATCCATAGATGGAGCGAAAAGCAATGGGCCTAGTGAACCTTTTTTGATCCGTCTCGGGATCATAGGGGTCTGTTAGAAGTGCAAAATGTTTGCATTTGTCATAAAACCTGCATTTGCTATTTGTTGTTGAAGACATACGGAGGACGTTTGTAGATTCGAGTCGTTCTAATGTTTAGTATTTGTAAAACAGGAGTTGTTGGTGATGGATTCATGGCTAGTGGTATCACCTTCCAAAACACAGCCGGTCCGGATGCTCACCAAGCCGTAGCATTCCGATCCGACAGTGATCTTTCCGCTGTAGAAAACTGTGAATTCATTGGCAATCAAGACACCCTATACGCCCACGCTTTGCGCCAATACTACAAGTCCTGCCGTATCCAAGGTAATGTAGACTTCATTTTCGGAAACTCAGCTTCTTTCTTTCAAGACTGTGACATCCTAATAGCACCTCGACAACTCCGTCCTGAAA</genome_strand>
        <mrna_strand>AAGGAAGGAGGATGTGACTATAAGACGGTGCAGGAGGCGGTGAATGCTGCACCGGAGAAGGAGCAAACCCGGAAGTTTGTGATATGGATCAAATCCGGGTTGTATGAGGAGAAGGTTCGGGTCGGGTTGGAGAAGATGAATGTGGTGTTTTTGGGTGATGGAATGGGTAAAACTGTCATTACGGGTTCGTTGAGTGTTGGTCTTGCTGGTGTTACTACTTATGAGACTGCAACTGTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTGGTGATGGATTCATGGCTAGTGGTATCACCTTCCAAAACACAGCCGGTCCGGATGCTCACCAAGCCGTAGCATTCCGATCCGACAGTGATCTTTCCGCTGTAGAAAACTGTGAATTCATTGGCAATCAAGACACCCTATACGCCCACGCTTTGCGCCAATACTACAAGTCCTGCCGTATCCAAGGTAATGTAGACTTCATTTTCGGAAACTCAGCTTCTTTCTTTCAAGACTGTGACATCCTAATAGCACCTCGACAACTCCTTCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317306" ref_strand="+" ref_description="SGN-E317306 [cTOA-28-J24]">
      <seq>tattccgaaaatttaagcttctgttcatttccatggcttcctttttcacactcactatcttctccttaatcctcttcttctctatttcctccgccgctcgccaccattcctccacatccccgtcaatttcacttcagatccgtggtgcttgtaaggcttcacgggacccaccaacatgtgaatctgtattgacggattccggttacttaccgtctgagctaacgacgtcgttgatcatccaatcggctgttaaagtatcatcgaagaacaacgataaggcgaaagagatggtgcaggcaattatagatgcgtcgacagggaataatcagaaccgtacggacgctgggaaagtgtgtatggaggtgctcgggtatgcggagtatcgggtcgggttaacgggtcaggcagtgattaacggcggatacaagagcgctcgtgcatggatgagctccgttatggtgtatcaatacgactgctggtccgctttgaagtacgttaatggcacctcccaggtatctaaaacgatgtcgtttatcaattccttgatcggatacagcagcaatgcattggggatgatggtgaatttcgacctttacggtgctgataccgggtcatggaccgtacccaaaacagaacgagacgggttctgggaaggttcgggttcgggttcaagcgggtcgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="10219" stop="8937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9919" g_stop="9237" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E317306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9919" e_stop="9237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCCGAAAATTTAAGCTTCTGTTCATTTCCATGGCTTCCTTTTTCACACTCACTATCTTCTCCTTAATCCTCTTCTTCTCTATTTCCTCCGCCGCTCGCCACCATTCCTCCACATCCCCGTCAATTTCACTTCAGATCCGTGGTGCTTGTAAGGCTTCACGGGACCCACCAACATGTGAATCTGTATTGACGGATTCCGGTTACTTACCGTCTGAGCTAACGACGTCGTTGATCATCCAATCGGCTGTTAAAGTATCATCGAAGAACAACGATAAGGCGAAAGAGATGGTGCAGGCAATTATAGATGCGTCGACAGGGAATAATCAGAACCGTACGGACGCTGGGAAAGTGTGTATGGAGGTGCTCGGGTATGCGGAGTATCGGGTCGGGTTAACGGGTCAGGCAGTGATTAACGGCGGATACAAGAGCGCTCGTGCATGGATGAGCTCCGTTATGGTGTATCAATACGACTGCTGGTCCGCTTTGAAGTACGTTAATGGCACCTCCCAGGTATCTAAAACGATGTCGTTTATCAATTCCTTGATCGGATACAGCAGCAATGCATTGGGGATGATGGTGAATTTCGACCTTTACGGTGCTGATACCGGGTCATGGACCGTACCCAAAACAGAACGAGACGGGTTCTGGGAAGGTTCGGGTTCGGGTTCAAGCGGGTCGGGT</genome_strand>
        <mrna_strand>TATTCCGAAAATTTAAGCTTCTGTTCATTTCCATGGCTTCCTTTTTCACACTCACTATCTTCTCCTTAATCCTCTTCTTCTCTATTTCCTCCGCCGCTCGCCACCATTCCTCCACATCCCCGTCAATTTCACTTCAGATCCGTGGTGCTTGTAAGGCTTCACGGGACCCACCAACATGTGAATCTGTATTGACGGATTCCGGTTACTTACCGTCTGAGCTAACGACGTCGTTGATCATCCAATCGGCTGTTAAAGTATCATCGAAGAACAACGATAAGGCGAAAGAGATGGTGCAGGCAATTATAGATGCGTCGACAGGGAATAATCAGAACCGTACGGACGCTGGGAAAGTGTGTATGGAGGTGCTCGGGTATGCGGAGTATCGGGTCGGGTTAACGGGTCAGGCAGTGATTAACGGCGGATACAAGAGCGCTCGTGCATGGATGAGCTCCGTTATGGTGTATCAATACGACTGCTGGTCCGCTTTGAAGTACGTTAATGGCACCTCCCAGGTATCTAAAACGATGTCGTTTATCAATTCCTTGATCGGATACAGCAGCAATGCATTGGGGATGATGGTGAATTTCGACCTTTACGGTGCTGATACCGGGTCATGGACCGTACCCAAAACAGAACGAGACGGGTTCTGGGAAGGTTCGGGTTCGGGTTCAAGCGGGTCGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310356" ref_strand="+" ref_description="SGN-E310356 [cTOA-1-G14]">
      <seq>ctatttggcctagttttcctcttcaaaaccctcaacaccatcaccttccctcctcctcaacccaacaacaacaacaacaacaagaagaagtagtagttgtcccttttgatcatgtgttaaacaaccatgttcaaaccctaatagaggatcaagaacacgatgatcaagacgaagatgaagaggaagaagaagagctaggagccatgaaagaaatgatgttcaaaattgcatctatgcaaccagtagacattgatccatccactatacgaaaacctaaaaggcgtaacgtacgtataagcaatgatccacaaagcgtagcagccaggctacgccgcgaaaggataagtgaaaaaatcagaatcttgcaaagattagtccctggtggaacaaaaatggacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="39996" stop="40996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40296" g_stop="40696" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E310356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40296" e_stop="40696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTGGCCTAGTTTTCCTCTTCAAAACCCTCAACACCATCACCTTCCCTCCTCCTCAACCCAACAACAACAACAACAACAAGAAGAAGTAGTAGTTGTCCCTTTTGATCATGTGTTAAACAACCATGTTCAAACCCTAATAGAGGATCAAGAACACGATGATCAAGACGAAGATGAAGAGGAAGAAGAAGAGCTAGGAGCCATGAAAGAAATGATGTTCAAAATTGCATCTATGCAACCAGTAGACATTGATCCATCCACTATACGAAAACCTAAAAGGCGTAACGTACGTATAAGCAATGATCCACAAAGCGTAGCAGCCAGGCTACGCCGCGAAAGGATAAGTGAAAAAATCAGAATCTTGCAAAGATTAGTCCCTGGTGGAACAAAAATGGACACT</genome_strand>
        <mrna_strand>CTATTTGGCCTAGTTTTCCTCTTCAAAACCCTCAACACCATCACCTTCCCTCCTCCTCAACCCAACAACAACAACAACAACAAGAAGAAGTAGTAGTTGTCCCTTTTGATCATGTGTTAAACAACCATGTTCAAACCCTAATAGAGGATCAAGAACACGATGATCAAGACGAAGATGAAGAGGAAGAAGAAGAGCTAGGAGCCATGAAAGAAATGATGTTCAAAATTGCATCTATGCAACCAGTAGACATTGATCCATCCACTATACGAAAACCTAAAAGGCGTAACGTACGTATAAGCAATGATCCACAAAGCGTAGCAGCCAGGCTACGCCGCGAAAGGATAAGTGAAAAAATCAGAATCTTGCAAAGATTAGTCCCTGGTGGAACAAAAATGGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312321" ref_strand="+" ref_description="SGN-E312321 [cTOA-5-G7]">
      <seq>agagatcaggaagcaacaaataaggatgaagggtggtacagttcagatcaattggcacgacagtaagccagttttgtgccttgattttcaccacctcaccggcgttattgctactggtggcgccgactatgatatcaagatgtgggtgattgattctgaagaaaatgaaaagaaagcgccttcagttacataccaggctagcctttcttaccatagtggtgctgtgaatgctcttcggttctccccttcaggagagcatttggcctctggtgccgatggcggcgagctcatcatttggaagctacattcttcagatgacagcaaaacatggaaagtcctaaagacgttatcatttcaccggaaggatgtattggacttgcagtggtctgctgatggttcttttttaatttctggttctgttgataattcatgcatcgtatgggatgtcaacaaaggttctgttcatcagattttggatgctcatttgcactatgtgcaaggtgtggcatgggatccattgtccaagtatactgcctcactcagttcagatagatcttgccggatttacagcaatagaccatctaaaacaaaaggagttgagaagttgaattttgtgtgtcaacatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="56654" stop="52068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56354" g_stop="56216" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56215" i_stop="54877" i_length="1339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54876" g_stop="54765" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="251" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54764" i_stop="53681" i_length="1084">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53680" g_stop="53654" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="278" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53653" i_stop="53574" i_length="80">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53573" g_stop="53501" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="351" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53500" i_stop="52730" i_length="771">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52729" g_stop="52626" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="455" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52625" i_stop="52542" i_length="84">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.230" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52541" g_stop="52368" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="629" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E312321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56354" e_stop="56216"/>
          <exon e_start="54876" e_stop="54765"/>
          <exon e_start="53680" e_stop="53654"/>
          <exon e_start="53573" e_stop="53501"/>
          <exon e_start="52729" e_stop="52626"/>
          <exon e_start="52541" e_stop="52368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAGGTTAAAAATTACGATTTTACCCTTTTGAGCCTTGTGTTTCTTAAGTTGGTTTGTCTTATATGCTTCGATTATGCTAATGCTGGATATTGGTTTTAATAATTTTAGTTGGTTAGTCGGATGATATCAACTTTTCATTAATTGATTAATTAATAGTTTGAACTTGGTTTTTGTTTATTGGGTATTGAGATTTTAAGTTGGTGTAAGAATGTTTCAAATTCAAAGGAAATGAAAACACAGTAGAGGGAAATGAAGAGGAAATCTGCATTTTTGTTAGTTAGTTAATAGTTTGAATTTAGTTTTTGTCAACTCGGTAATGCGATTGGAAGATAGTGTAAGAAATTTTGCAGTTCAAAGGAAATGGCAACACAGTAAAAGGGGGAAATGAAGAAGAAAATAGGAAAGAGGGATGTGAAGAAATAACAAAAATTCTAGAAGCGGAAAAGAGGATTTTTTTCTCCATTATGTCCTCGTTTTCTTTGAGCGAATGGGAGGAAATGTGTTTACCATGATTGCATAGATAGCAACAATATGCCGGTACATTTGAATTATTTAGAACAGGGGTGCACATCCCAATTGAATAGTAAAAGACATAGAAAGGGAAAGAGAGGAGCAAAATCTCATTCACTTTCTTAGTATGGTCTCAATTGGCCCAGAAAGGTAACCAAGAGTTGACACTTCAGACACAGGTTTATAATCATCTTCCTTGCAGGACAATATAAATGTTGGGTATGCATATGATTCCATATTCTCAACATGTGATATTCTTACCAATTGAGGATTTGTCATTTCAATGGGTGCCCACATTAGTAGAATTACAGAACTAGGTATGAATTTTAGTGTTTTCTTTACTGGACCAGATTCACCATCCAGTTAACCAAGCAACTAAACTCAGGAGTTTCATGATCCCCTTACCTCTGACCCAAAAAACTCAACTTTATTGATTTAATTCATAATGACTGAGTAGGAGGATGTTTATGCTTGTGATTTGTTTCTCTGCAACCTTGAACTATAAGCCGGTTAGTGATGGTGGCCTAATAGCTAATGCAAACTCTTAAAACCTATCCGGTTCTTCTAACTCAACAGAATAAATCACATTTAATATAGATTGTGTTAGTGTCTGAAATCTTACCATCTACTTGAACTTGTTTACTTCAACTTCAACCTGAAGTAACTCTTGCTTGACGAGTGTGAATTCTTTTGCTTCAGATTGCAAAGTCCTTGCATGTTGACATATTAATCACTGGTCTCAAAGTTTGCTGATATTTTTAAAGGACTTCCATATTATTATTTTATGCTTGGGATGAAATATATAACATCTGGTTCAAAATAAATTCAACAGATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAGGTGAAGTTGTTCATCTTGCTTTATTAAAAGATTCTGGTAGCTAATCACTGAAAGCATTAATTTTACAAAGGCAAGAATTGGTACATTTTTATATCCTGTCGAGTGTTGGAGTTTCATCTGAAGCTGCAGGTTGTTTTGTGCAGTTTATGAATATGGTTGTTTGACTGACTTGGCTTTCTTCTCTCTGTATCTGTATACCTCCCTGAAGAAAAATGTAATATTGGTTTTAGAGAGGGTCAGCGTTGGTAATGTTATTGCTAACTTTACTAAGTTGCAATTAGCTGTACATTTGGTTAAAAAAATTCCGTTTTTTCTTTCAATTTTTACCTTGTTTGAAATAGACTTGTAGGCTTTCATGTTAGTTTCAGTCTTTCAGAAAGCTGATGGCCTGTTAACCAATTTCTTGAAATAATAACGCTGTGAGAAGAATCGTTTCCTGGTGGACTATGTATTGCTTTAAACATTAATATTAGAAAGTTGGAATATCAGTTGTAGATATTCTATTAGCTTGAGTGATTCTCTGGGATTGCTATAGGTTATGAAATTCCTGCAGAATCTTTTTGCTGGATCTGTATTTTTGAGCACTTGTTGATCTGAGAACTAGAGATACAGAGTGGAGTCGGAGCCTCTTTCGTAGTCAGATTTGTTAGATAGTGAGTTGCAATGACATTCACGAAATCATCATTACCTTTGACTATGCAGAGAAGGTTGCTCGTACAGTCTTACTATAAATGAAATAACAGAAGATAACAATGTTTCTCTCAGTATTTGTAGCATTTGATTCAACATGTCTGAAGCACAACTTGATGGAGAATCACGGTGATAGTCTTTTGGGGTTTTTACTTGCTTCTAGGTCTATGCCATCTTACAAGCCTCACTTCTCTGGGTTGATCAATACATTGGAAATGTTAATATGTAACTGTGGTTACTTCATTTTTAGCTACCTTTTCATTTATCAAAACTTCTATTATTACTGAACTTCCAGTGTATGCCTCCATCTGATTTCTTAAACTGTTTGATGTTATACTTGTACCTATCTAGTCAGCCAGCAAACTGAATTATCATTTTTTTTGGTAATATGCAGGAGAGCATTTGGCCTCTGGTGCCGATGGTATAGACTTGTCCCTCTAAATCTCTTAATTTAGTCTGGATCAAATAATTTAACAATATCTACAACTGCTCCTGATGTAGGCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACATGGAAAGTCCTAAAGACGTTATCGTAAGCCTTTCATTTGGTCTTATCGCCTTTGTGAATTTCTAAGCACTCATAAAATAGCCGCAATCGCTCCATGGAACATTAGCTACTGCTTTTGTTTTATTCTTATGGAAAGCCAGAGAATTATTAGAACACACTGTTTGGGAATGTCCTGCATTTTTCATTGTGATCTTTATCCTTTTTCTCTTGTTAAATAAATTTTTAAATCTGATGTAGGAAGAAAGGAAAAGTTATAGTTGGCATTTCAGTAGCGGACTTAAGTTAGTGGATGCAGTTGGTGGAAGAGGGTTTTGCTTTCGGGATTATAGGATATTATAACCACATGAAATAGTTGAAGTGTATGATAACACAGCGTTGATTATAGAAAAAGCAAGTCATGTTGATTATATTCTTTCATTTTTTTAATAAAATAAAGTAAATTAACATGATCATATTCTAAGTGTCTATTTGTTTGGATTGTATTTTGGTTTAAGCAGAATGTTGCAATAAACCAGCATATTTATAATAATCCCTAGTTTTGCAGGGAAAAGCAGCTTTGTGTTAATAACATTTAGCAAGAATTTTATTGTATATATAGTTAACTTTTGTTAACCTCTACTTTAAATAATAAATAAACACTATACAAATAATCCATAATATTTTAATAACCATATTAAACAAGACTTTTCAAATGTTAATCTATAACTTTGTATATAAGTCACAAAAGGAGCATAATCATTGTTGTCATGGAACTATTTCTAATTTGATACTAGTACTCATGAGTTCACTTCTCAGATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAGGTAAAATTAAAGAGGATCTAACTTAAAGAGTTTTTGCTAAGATAAATAAAATTTATACTAACAGTTGGCCAGTTCCTTCATCAGGTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATCCATTGTCCAAGTATACTGCCTCACTCAGTTCAGATAGATCTTGCCGGATTTACAGCAATAGACCATCTAAAACAAAAGGAGTTGAGAAGTTGAATTTTGTGTGTCAACATGTCA</genome_strand>
        <mrna_strand>AGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCATTTGGCCTCTGGTGCCGATG................................................................................GCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACATGGAAAGTCCTAAAGACGTTATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAG....................................................................................GTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATCCATTGTCCAAGTATACTGCCTCACTCAGTTCAGATAGATCTTGCCGGATTTACAGCAATAGACCATCTAAAACAAAAGGAGTTGAGAAGTTGAATTTTGTGTGTCAACATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251919" ref_strand="+" ref_description="SGN-E251919 [cLEG-14-K9]">
      <seq>caaccaaaatcaccatttctctaaaccctattttcttcttcttctcttgcatttttccaaaatctcaaaaattagtaagaagagagatcaggaagcaacaaataaggatgaagggtggtaccagttcagatcaattggcacgacagtaagccagttttgtgccttgattttcaccacctcaccggcgttattgctactggtggcgccgacctatgatatcaagatgtgggtgattgattctgaagaaaatgaaaagaaagcgcccttcagttacatacccaggctagcctttcttacccatagtggtgcctgtgaatgcctcttcggttctccccttcaggagagcatttggcctctggtgcccgatggcggcgagctcatcatttggaagctaccattcttcagatgaccagcaaaacatggaaagtcctaaagaccgttatcatttcaccggaaggatgtattggacttgcagtggtctgctgatggttcttttttaatttctggttctgttgataattcatgcatcgtatgggatgtcaacaaaggttctgttcatcagattttggatgctcatttgcactatgtgcaaggtgtggcatgggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="56735" stop="52182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56435" g_stop="56216" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56215" i_stop="54877" i_length="1339">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54876" g_stop="54765" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="340" r_length="117" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54764" i_stop="53681" i_length="1084">
            <donor d_prob="0.952" d_score="0.87"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53680" g_stop="53654" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="368" r_length="28" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53653" i_stop="53574" i_length="80">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.882" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53573" g_stop="53501" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="444" r_length="76" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53500" i_stop="52730" i_length="771">
            <donor d_prob="0.757" d_score="0.87"/>
            <acceptor a_prob="0.486" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52729" g_stop="52626" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="548" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52625" i_stop="52542" i_length="84">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.230" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52541" g_stop="52482" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="608" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E251919" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56435" e_stop="56216"/>
          <exon e_start="54876" e_stop="54765"/>
          <exon e_start="53680" e_stop="53654"/>
          <exon e_start="53573" e_stop="53501"/>
          <exon e_start="52729" e_stop="52626"/>
          <exon e_start="52541" e_stop="52482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAA-CAAAATCACCATTTCTCTAAACCCTATTTTCTTCTTCTTCTCTTGCATTTTTCCAAAATCTCAAAAATTAGTAAGAAGAGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTA-CAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGA-CTATGATATCAAGGTTAAAAATTACGATTTTACCCTTTTGAGCCTTGTGTTTCTTAAGTTGGTTTGTCTTATATGCTTCGATTATGCTAATGCTGGATATTGGTTTTAATAATTTTAGTTGGTTAGTCGGATGATATCAACTTTTCATTAATTGATTAATTAATAGTTTGAACTTGGTTTTTGTTTATTGGGTATTGAGATTTTAAGTTGGTGTAAGAATGTTTCAAATTCAAAGGAAATGAAAACACAGTAGAGGGAAATGAAGAGGAAATCTGCATTTTTGTTAGTTAGTTAATAGTTTGAATTTAGTTTTTGTCAACTCGGTAATGCGATTGGAAGATAGTGTAAGAAATTTTGCAGTTCAAAGGAAATGGCAACACAGTAAAAGGGGGAAATGAAGAAGAAAATAGGAAAGAGGGATGTGAAGAAATAACAAAAATTCTAGAAGCGGAAAAGAGGATTTTTTTCTCCATTATGTCCTCGTTTTCTTTGAGCGAATGGGAGGAAATGTGTTTACCATGATTGCATAGATAGCAACAATATGCCGGTACATTTGAATTATTTAGAACAGGGGTGCACATCCCAATTGAATAGTAAAAGACATAGAAAGGGAAAGAGAGGAGCAAAATCTCATTCACTTTCTTAGTATGGTCTCAATTGGCCCAGAAAGGTAACCAAGAGTTGACACTTCAGACACAGGTTTATAATCATCTTCCTTGCAGGACAATATAAATGTTGGGTATGCATATGATTCCATATTCTCAACATGTGATATTCTTACCAATTGAGGATTTGTCATTTCAATGGGTGCCCACATTAGTAGAATTACAGAACTAGGTATGAATTTTAGTGTTTTCTTTACTGGACCAGATTCACCATCCAGTTAACCAAGCAACTAAACTCAGGAGTTTCATGATCCCCTTACCTCTGACCCAAAAAACTCAACTTTATTGATTTAATTCATAATGACTGAGTAGGAGGATGTTTATGCTTGTGATTTGTTTCTCTGCAACCTTGAACTATAAGCCGGTTAGTGATGGTGGCCTAATAGCTAATGCAAACTCTTAAAACCTATCCGGTTCTTCTAACTCAACAGAATAAATCACATTTAATATAGATTGTGTTAGTGTCTGAAATCTTACCATCTACTTGAACTTGTTTACTTCAACTTCAACCTGAAGTAACTCTTGCTTGACGAGTGTGAATTCTTTTGCTTCAGATTGCAAAGTCCTTGCATGTTGACATATTAATCACTGGTCTCAAAGTTTGCTGATATTTTTAAAGGACTTCCATATTATTATTTTATGCTTGGGATGAAATATATAACATCTGGTTCAAAATAAATTCAACAGATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCG-CCTTCAGTTACATA-CCAGGCTAGCCTTTCTTA-CCATAGTGGTG-CTGTGAATG-CTCTTCGGTTCTCCCCTTCAGGTGAAGTTGTTCATCTTGCTTTATTAAAAGATTCTGGTAGCTAATCACTGAAAGCATTAATTTTACAAAGGCAAGAATTGGTACATTTTTATATCCTGTCGAGTGTTGGAGTTTCATCTGAAGCTGCAGGTTGTTTTGTGCAGTTTATGAATATGGTTGTTTGACTGACTTGGCTTTCTTCTCTCTGTATCTGTATACCTCCCTGAAGAAAAATGTAATATTGGTTTTAGAGAGGGTCAGCGTTGGTAATGTTATTGCTAACTTTACTAAGTTGCAATTAGCTGTACATTTGGTTAAAAAAATTCCGTTTTTTCTTTCAATTTTTACCTTGTTTGAAATAGACTTGTAGGCTTTCATGTTAGTTTCAGTCTTTCAGAAAGCTGATGGCCTGTTAACCAATTTCTTGAAATAATAACGCTGTGAGAAGAATCGTTTCCTGGTGGACTATGTATTGCTTTAAACATTAATATTAGAAAGTTGGAATATCAGTTGTAGATATTCTATTAGCTTGAGTGATTCTCTGGGATTGCTATAGGTTATGAAATTCCTGCAGAATCTTTTTGCTGGATCTGTATTTTTGAGCACTTGTTGATCTGAGAACTAGAGATACAGAGTGGAGTCGGAGCCTCTTTCGTAGTCAGATTTGTTAGATAGTGAGTTGCAATGACATTCACGAAATCATCATTACCTTTGACTATGCAGAGAAGGTTGCTCGTACAGTCTTACTATAAATGAAATAACAGAAGATAACAATGTTTCTCTCAGTATTTGTAGCATTTGATTCAACATGTCTGAAGCACAACTTGATGGAGAATCACGGTGATAGTCTTTTGGGGTTTTTACTTGCTTCTAGGTCTATGCCATCTTACAAGCCTCACTTCTCTGGGTTGATCAATACATTGGAAATGTTAATATGTAACTGTGGTTACTTCATTTTTAGCTACCTTTTCATTTATCAAAACTTCTATTATTACTGAACTTCCAGTGTATGCCTCCATCTGATTTCTTAAACTGTTTGATGTTATACTTGTACCTATCTAGTCAGCCAGCAAACTGAATTATCATTTTTTTTGGTAATATGCAGGAGAGCATTTGGCCTCTGGTG-CCGATGGTATAGACTTGTCCCTCTAAATCTCTTAATTTAGTCTGGATCAAATAATTTAACAATATCTACAACTGCTCCTGATGTAGGCGGCGAGCTCATCATTTGGAAGCTA-CATTCTTCAGATGA-CAGCAAAACATGGAAAGTCCTAAAGA-CGTTATCGTAAGCCTTTCATTTGGTCTTATCGCCTTTGTGAATTTCTAAGCACTCATAAAATAGCCGCAATCGCTCCATGGAACATTAGCTACTGCTTTTGTTTTATTCTTATGGAAAGCCAGAGAATTATTAGAACACACTGTTTGGGAATGTCCTGCATTTTTCATTGTGATCTTTATCCTTTTTCTCTTGTTAAATAAATTTTTAAATCTGATGTAGGAAGAAAGGAAAAGTTATAGTTGGCATTTCAGTAGCGGACTTAAGTTAGTGGATGCAGTTGGTGGAAGAGGGTTTTGCTTTCGGGATTATAGGATATTATAACCACATGAAATAGTTGAAGTGTATGATAACACAGCGTTGATTATAGAAAAAGCAAGTCATGTTGATTATATTCTTTCATTTTTTTAATAAAATAAAGTAAATTAACATGATCATATTCTAAGTGTCTATTTGTTTGGATTGTATTTTGGTTTAAGCAGAATGTTGCAATAAACCAGCATATTTATAATAATCCCTAGTTTTGCAGGGAAAAGCAGCTTTGTGTTAATAACATTTAGCAAGAATTTTATTGTATATATAGTTAACTTTTGTTAACCTCTACTTTAAATAATAAATAAACACTATACAAATAATCCATAATATTTTAATAACCATATTAAACAAGACTTTTCAAATGTTAATCTATAACTTTGTATATAAGTCACAAAAGGAGCATAATCATTGTTGTCATGGAACTATTTCTAATTTGATACTAGTACTCATGAGTTCACTTCTCAGATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAGGTAAAATTAAAGAGGATCTAACTTAAAGAGTTTTTGCTAAGATAAATAAAATTTATACTAACAGTTGGCCAGTTCCTTCATCAGGTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATC</genome_strand>
        <mrna_strand>CAACCAAAATCACCATTTCTCTAAACCCTATTTTCTTCTTCTTCTCTTGCATTTTTCCAAAATCTCAAAAATTAGTAAGAAGAGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACCAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACCTATGATATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCCTTCAGTTACATACCCAGGCTAGCCTTTCTTACCCATAGTGGTGCCTGTGAATGCCTCTTCGGTTCTCCCCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCATTTGGCCTCTGGTGCCCGATG................................................................................GCGGCGAGCTCATCATTTGGAAGCTACCATTCTTCAGATGACCAGCAAAACATGGAAAGTCCTAAAGACCGTTATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAG....................................................................................GTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273234" ref_strand="+" ref_description="SGN-E273234 [cLEM-24-K17]">
      <seq>caaaatctcaaaaattagtaagaagagagatcaggaagcaacaaataaggatgaagggtggtacagttcagatcaattggcacgacagtaagccagttttgtgccttgattttcaccacctcaccggcgttattgctactggtggcgccgactatgatatcaagatgtgggtgattgattctgaagaaaatgaaaagaaagcgccttcagttacataccaggctagcctttcttaccatagtggtgctgtgaatgctcttcggttctccccttcaggagagcatttggcctctggtgccgatggcggcgagctcatcatttggaagctacattcttcagatgacagcaaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="56679" stop="53223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56379" g_stop="56216" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56215" i_stop="54877" i_length="1339">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54876" g_stop="54765" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="276" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54764" i_stop="53681" i_length="1084">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53680" g_stop="53654" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="303" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53653" i_stop="53574" i_length="80">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.882" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53573" g_stop="53523" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="354" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E273234" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56379" e_stop="56216"/>
          <exon e_start="54876" e_stop="54765"/>
          <exon e_start="53680" e_stop="53654"/>
          <exon e_start="53573" e_stop="53523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCTCAAAAATTAGTAAGAAGAGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAGGTTAAAAATTACGATTTTACCCTTTTGAGCCTTGTGTTTCTTAAGTTGGTTTGTCTTATATGCTTCGATTATGCTAATGCTGGATATTGGTTTTAATAATTTTAGTTGGTTAGTCGGATGATATCAACTTTTCATTAATTGATTAATTAATAGTTTGAACTTGGTTTTTGTTTATTGGGTATTGAGATTTTAAGTTGGTGTAAGAATGTTTCAAATTCAAAGGAAATGAAAACACAGTAGAGGGAAATGAAGAGGAAATCTGCATTTTTGTTAGTTAGTTAATAGTTTGAATTTAGTTTTTGTCAACTCGGTAATGCGATTGGAAGATAGTGTAAGAAATTTTGCAGTTCAAAGGAAATGGCAACACAGTAAAAGGGGGAAATGAAGAAGAAAATAGGAAAGAGGGATGTGAAGAAATAACAAAAATTCTAGAAGCGGAAAAGAGGATTTTTTTCTCCATTATGTCCTCGTTTTCTTTGAGCGAATGGGAGGAAATGTGTTTACCATGATTGCATAGATAGCAACAATATGCCGGTACATTTGAATTATTTAGAACAGGGGTGCACATCCCAATTGAATAGTAAAAGACATAGAAAGGGAAAGAGAGGAGCAAAATCTCATTCACTTTCTTAGTATGGTCTCAATTGGCCCAGAAAGGTAACCAAGAGTTGACACTTCAGACACAGGTTTATAATCATCTTCCTTGCAGGACAATATAAATGTTGGGTATGCATATGATTCCATATTCTCAACATGTGATATTCTTACCAATTGAGGATTTGTCATTTCAATGGGTGCCCACATTAGTAGAATTACAGAACTAGGTATGAATTTTAGTGTTTTCTTTACTGGACCAGATTCACCATCCAGTTAACCAAGCAACTAAACTCAGGAGTTTCATGATCCCCTTACCTCTGACCCAAAAAACTCAACTTTATTGATTTAATTCATAATGACTGAGTAGGAGGATGTTTATGCTTGTGATTTGTTTCTCTGCAACCTTGAACTATAAGCCGGTTAGTGATGGTGGCCTAATAGCTAATGCAAACTCTTAAAACCTATCCGGTTCTTCTAACTCAACAGAATAAATCACATTTAATATAGATTGTGTTAGTGTCTGAAATCTTACCATCTACTTGAACTTGTTTACTTCAACTTCAACCTGAAGTAACTCTTGCTTGACGAGTGTGAATTCTTTTGCTTCAGATTGCAAAGTCCTTGCATGTTGACATATTAATCACTGGTCTCAAAGTTTGCTGATATTTTTAAAGGACTTCCATATTATTATTTTATGCTTGGGATGAAATATATAACATCTGGTTCAAAATAAATTCAACAGATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAGGTGAAGTTGTTCATCTTGCTTTATTAAAAGATTCTGGTAGCTAATCACTGAAAGCATTAATTTTACAAAGGCAAGAATTGGTACATTTTTATATCCTGTCGAGTGTTGGAGTTTCATCTGAAGCTGCAGGTTGTTTTGTGCAGTTTATGAATATGGTTGTTTGACTGACTTGGCTTTCTTCTCTCTGTATCTGTATACCTCCCTGAAGAAAAATGTAATATTGGTTTTAGAGAGGGTCAGCGTTGGTAATGTTATTGCTAACTTTACTAAGTTGCAATTAGCTGTACATTTGGTTAAAAAAATTCCGTTTTTTCTTTCAATTTTTACCTTGTTTGAAATAGACTTGTAGGCTTTCATGTTAGTTTCAGTCTTTCAGAAAGCTGATGGCCTGTTAACCAATTTCTTGAAATAATAACGCTGTGAGAAGAATCGTTTCCTGGTGGACTATGTATTGCTTTAAACATTAATATTAGAAAGTTGGAATATCAGTTGTAGATATTCTATTAGCTTGAGTGATTCTCTGGGATTGCTATAGGTTATGAAATTCCTGCAGAATCTTTTTGCTGGATCTGTATTTTTGAGCACTTGTTGATCTGAGAACTAGAGATACAGAGTGGAGTCGGAGCCTCTTTCGTAGTCAGATTTGTTAGATAGTGAGTTGCAATGACATTCACGAAATCATCATTACCTTTGACTATGCAGAGAAGGTTGCTCGTACAGTCTTACTATAAATGAAATAACAGAAGATAACAATGTTTCTCTCAGTATTTGTAGCATTTGATTCAACATGTCTGAAGCACAACTTGATGGAGAATCACGGTGATAGTCTTTTGGGGTTTTTACTTGCTTCTAGGTCTATGCCATCTTACAAGCCTCACTTCTCTGGGTTGATCAATACATTGGAAATGTTAATATGTAACTGTGGTTACTTCATTTTTAGCTACCTTTTCATTTATCAAAACTTCTATTATTACTGAACTTCCAGTGTATGCCTCCATCTGATTTCTTAAACTGTTTGATGTTATACTTGTACCTATCTAGTCAGCCAGCAAACTGAATTATCATTTTTTTTGGTAATATGCAGGAGAGCATTTGGCCTCTGGTGCCGATGGTATAGACTTGTCCCTCTAAATCTCTTAATTTAGTCTGGATCAAATAATTTAACAATATCTACAACTGCTCCTGATGTAGGCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACAT</genome_strand>
        <mrna_strand>CAAAATCTCAAAAATTAGTAAGAAGAGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCATTTGGCCTCTGGTGCCGATG................................................................................GCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544617" ref_strand="+" ref_description="SGN-E544617 [TUS-67-A17](-)">
      <seq>agagttgcaagcttctctcaatgctcagatgtggcattctgctcatcagcagtcattgctggatgctgccaacagggatctgtttgattcggagagagagatacagagtctgaggaaggctattgcagatcattgtgttggacaagtaggttcgtgcgataagcccccaacagtacttgtatggccagctgaagtccgttatggtcatcattctaacggccaccttgaagttgataggaattcagatacttcagagaagggaagaggagatggagaaaggtttgaaatgctgaagcgcgaaaaagatgagttgaaagaagtgatcgaagggaaggattatctgatcaagaactacaaggagcaaaccgtcgagctttcaatcaaggtcaaggaactgcaacagagactggatgctcagctcccaaacattttgtagccgcgtcgttagagttgtgtattcttttgtttgcttcccattctcttgattgattttaaagcttcatgacatgggacttgctattttctcagttttatctgagttttttctcccctccccctccctccacctttctgttttgtgttcatcatgtcgacgaaccgattttcgatataccttctcttagtattagtagattgagtttgaggattgccctcctgtgttgctgaacatgtaaaaatggttcatcatgcattgaaaaattttcatctatatattcaagagacttttgctcaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="57833" stop="56502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57533" g_stop="56802" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="744"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E544617" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57533" e_stop="56802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTGCAAGCTTCTCTCAATGCTCAGATGTCGCATTCTGCTCATCAGCAGTCATTGCTGGATGCTGCCAACAGGGATCTGTTTGATTCGGAGAGAGAGATACAGAGGCTGAGGAAGGCTATTGCAGATCATTGTGTTGGACAAGTAGGTTCGTGCGATAAGCCCCCAACAGTACCTGTATGGCCAGCTGAAGTCCGTTATGGTCATCATACTAACGGCCACCTTGAAGTTGATAGGAATTCAGATACTTCAGAGAAGGGAAGAGGAGATGGAGAAAGGTTTGAAATGCTGAAGCGCGAAAAAGATGAGTTGAAAGAAGTGATCGAAGGGAAGGATTATCTGATCAAGAACTACAAGGAGCAAACCGTCGAGCTTTCAATCAAGGTCAAGGAACTGCAACAGAGACTGGATGCTCAGCTCCCAAACATTTTGTAGCCGCGTCGTTAGAGTTGTGTATTCTTTTGTTTGCTTCCCATTCTCTTGATTGATTTTAAAGCTTCATGACATGGGACTTGCTATTTTCTCAGTTTTATCTGAGTTTTTTCTCCCCTCCCCCTCCCTCCACCTTTCTGTTTTGTGTTCATCATGTCGACGAACCGATTTTCGATATACCTTCTCTTAGTATTAGTAGATTGAGTTTGAGGATTGCCCTCCTGTGTTGCTGAACATGTAAAAATGGTTCATCATGCATTGAAAAATTTTCATCTATATATTCAAGAGACTTTTGCTCA</genome_strand>
        <mrna_strand>AGAGTTGCAAGCTTCTCTCAATGCTCAGATGTGGCATTCTGCTCATCAGCAGTCATTGCTGGATGCTGCCAACAGGGATCTGTTTGATTCGGAGAGAGAGATACAGAGTCTGAGGAAGGCTATTGCAGATCATTGTGTTGGACAAGTAGGTTCGTGCGATAAGCCCCCAACAGTACTTGTATGGCCAGCTGAAGTCCGTTATGGTCATCATTCTAACGGCCACCTTGAAGTTGATAGGAATTCAGATACTTCAGAGAAGGGAAGAGGAGATGGAGAAAGGTTTGAAATGCTGAAGCGCGAAAAAGATGAGTTGAAAGAAGTGATCGAAGGGAAGGATTATCTGATCAAGAACTACAAGGAGCAAACCGTCGAGCTTTCAATCAAGGTCAAGGAACTGCAACAGAGACTGGATGCTCAGCTCCCAAACATTTTGTAGCCGCGTCGTTAGAGTTGTGTATTCTTTTGTTTGCTTCCCATTCTCTTGATTGATTTTAAAGCTTCATGACATGGGACTTGCTATTTTCTCAGTTTTATCTGAGTTTTTTCTCCCCTCCCCCTCCCTCCACCTTTCTGTTTTGTGTTCATCATGTCGACGAACCGATTTTCGATATACCTTCTCTTAGTATTAGTAGATTGAGTTTGAGGATTGCCCTCCTGTGTTGCTGAACATGTAAAAATGGTTCATCATGCATTGAAAAATTTTCATCTATATATTCAAGAGACTTTTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537713" ref_strand="+" ref_description="SGN-E537713 [TUS-56-H9](-)">
      <seq>ggaaggctattgcagatccattgtgttggacaagtaggttcgtgcgataagcccccaacagtacctgtatggccagctgaagtccgttatggtcatcatactaacggccaccttgaagttgataggaattcagatacttcagagaagggaagaggagatggagaaaggtttgaaatgctgaagcgcgaaaaagatgagttgaaagaagtgatcgaagggaaggattatctgatcaagaactacaaggagcaaaccgtcgagctttcaatcaaggtcaaggaactgcaacagagactggatgctcagctcccaaacattttgtagccgcgtcgttagagttgtgtattcttttgtttgcttcccattctcttgattgattttaaagcttcatgacatgggacttgctattttntcagttttatntgagttttttgtcccctccccctccctccacctttctgttttgtgttcatcatgtcgacgaaccgattttcgatataccttctcttagtattagtagattgagtttgaggattgccctcctgtgttgctgaacatgtaaaaatggttcatcatgcattgaaaaattttcatctaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="57720" stop="56521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57420" g_stop="56815" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E537713" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57420" e_stop="56815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGCTATTGCAGAT-CATTGTGTTGGACAAGTAGGTTCGTGCGATAAGCCCCCAACAGTACCTGTATGGCCAGCTGAAGTCCGTTATGGTCATCATACTAACGGCCACCTTGAAGTTGATAGGAATTCAGATACTTCAGAGAAGGGAAGAGGAGATGGAGAAAGGTTTGAAATGCTGAAGCGCGAAAAAGATGAGTTGAAAGAAGTGATCGAAGGGAAGGATTATCTGATCAAGAACTACAAGGAGCAAACCGTCGAGCTTTCAATCAAGGTCAAGGAACTGCAACAGAGACTGGATGCTCAGCTCCCAAACATTTTGTAGCCGCGTCGTTAGAGTTGTGTATTCTTTTGTTTGCTTCCCATTCTCTTGATTGATTTTAAAGCTTCATGACATGGGACTTGCTATTTTCTCAGTTTTATCTGAGTTTTTTCTCCCCTCCCCCTCCCTCCACCTTTCTGTTTTGTGTTCATCATGTCGACGAACCGATTTTCGATATACCTTCTCTTAGTATTAGTAGATTGAGTTTGAGGATTGCCCTCCTGTGTTGCTGAACATGTAAAAATGGTTCATCATGCATTGAAAAATTTTCATCTATATATTCAAG</genome_strand>
        <mrna_strand>GGAAGGCTATTGCAGATCCATTGTGTTGGACAAGTAGGTTCGTGCGATAAGCCCCCAACAGTACCTGTATGGCCAGCTGAAGTCCGTTATGGTCATCATACTAACGGCCACCTTGAAGTTGATAGGAATTCAGATACTTCAGAGAAGGGAAGAGGAGATGGAGAAAGGTTTGAAATGCTGAAGCGCGAAAAAGATGAGTTGAAAGAAGTGATCGAAGGGAAGGATTATCTGATCAAGAACTACAAGGAGCAAACCGTCGAGCTTTCAATCAAGGTCAAGGAACTGCAACAGAGACTGGATGCTCAGCTCCCAAACATTTTGTAGCCGCGTCGTTAGAGTTGTGTATTCTTTTGTTTGCTTCCCATTCTCTTGATTGATTTTAAAGCTTCATGACATGGGACTTGCTATTTTNTCAGTTTTATNTGAGTTTTTTGTCCCCTCCCCCTCCCTCCACCTTTCTGTTTTGTGTTCATCATGTCGACGAACCGATTTTCGATATACCTTCTCTTAGTATTAGTAGATTGAGTTTGAGGATTGCCCTCCTGTGTTGCTGAACATGTAAAAATGGTTCATCATGCATTGAAAAATTTTCATCTAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537715" ref_strand="+" ref_description="SGN-E537715 [TUS-56-H9]">
      <seq>ctgaatccggttctgacatatacagcaagcgagaagtgatacaaaagctgaggctacagttaaagagaagggacgaaacaatattagagatgcaagaacagattgtagagttgcaagcttctctcaatgctcagatgtcgcattctgctcatcagcagtcattgctggatgctgccaacagggatctgtttgattcggagagagagatacagaggctgaggaaggctattgcagatcattgtgttggacaagtaggttcgtgcgataagcccccaacagtacctgtatggccagctgaagtccgttatggtcatcatactaacggccaccttgaagttgataggaattcagatacttcagagaagggaagaggagatggagaaaggtttgaaatgctgaagcgcgaaaaagatgagttgaaagaagtgatcgaagggaaggattatctgatcaagaactacaaggagcaaaccgtcgagctttcaatcaaggtcaaggaactgcaacagagactggatgctcagctcccaaacattttgtagccgcgtcgttagagttgtgtattcttttgtttgcttcccattctcttgattgattttaaagcttcatgacatgggacttgctattttctcagttttatctgagttttttctcccctccccctccctccacctttctgttttgtggtcatcatgtcgacgaaccgattttcgatataccttctcttagtattagtagattgagtttgaggattgccctcctgtgttgctgaacatggtaaaaatggtcatcatgcattgaaaaaatttcatctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="57939" stop="56521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57639" g_stop="56817" g_length="823"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E537715" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57639" e_stop="56817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATCCGGTTCTGACATATACAGCAAGCGAGAAGTGATACAAAAGCTGAGGCTACAGTTAAAGAGAAGGGACGAAACAATATTAGAGATGCAAGAACAGATTGTAGAGTTGCAAGCTTCTCTCAATGCTCAGATGTCGCATTCTGCTCATCAGCAGTCATTGCTGGATGCTGCCAACAGGGATCTGTTTGATTCGGAGAGAGAGATACAGAGGCTGAGGAAGGCTATTGCAGATCATTGTGTTGGACAAGTAGGTTCGTGCGATAAGCCCCCAACAGTACCTGTATGGCCAGCTGAAGTCCGTTATGGTCATCATACTAACGGCCACCTTGAAGTTGATAGGAATTCAGATACTTCAGAGAAGGGAAGAGGAGATGGAGAAAGGTTTGAAATGCTGAAGCGCGAAAAAGATGAGTTGAAAGAAGTGATCGAAGGGAAGGATTATCTGATCAAGAACTACAAGGAGCAAACCGTCGAGCTTTCAATCAAGGTCAAGGAACTGCAACAGAGACTGGATGCTCAGCTCCCAAACATTTTGTAGCCGCGTCGTTAGAGTTGTGTATTCTTTTGTTTGCTTCCCATTCTCTTGATTGATTTTAAAGCTTCATGACATGGGACTTGCTATTTTCTCAGTTTTATCTGAGTTTTTTCTCCCCTCCCCCTCCCTCCACCTTTCTGTTTTGTGTTCATCATGTCGACGAACCGATTTTCGATATACCTTCTCTTAGTATTAGTAGATTGAGTTTGAGGATTGCCCTCCTGTGTTGCTGAACAT-GTAAAAATGGTTCATCATGCATTGAAAAATTTTCATCTATATATTCA</genome_strand>
        <mrna_strand>CTGAATCCGGTTCTGACATATACAGCAAGCGAGAAGTGATACAAAAGCTGAGGCTACAGTTAAAGAGAAGGGACGAAACAATATTAGAGATGCAAGAACAGATTGTAGAGTTGCAAGCTTCTCTCAATGCTCAGATGTCGCATTCTGCTCATCAGCAGTCATTGCTGGATGCTGCCAACAGGGATCTGTTTGATTCGGAGAGAGAGATACAGAGGCTGAGGAAGGCTATTGCAGATCATTGTGTTGGACAAGTAGGTTCGTGCGATAAGCCCCCAACAGTACCTGTATGGCCAGCTGAAGTCCGTTATGGTCATCATACTAACGGCCACCTTGAAGTTGATAGGAATTCAGATACTTCAGAGAAGGGAAGAGGAGATGGAGAAAGGTTTGAAATGCTGAAGCGCGAAAAAGATGAGTTGAAAGAAGTGATCGAAGGGAAGGATTATCTGATCAAGAACTACAAGGAGCAAACCGTCGAGCTTTCAATCAAGGTCAAGGAACTGCAACAGAGACTGGATGCTCAGCTCCCAAACATTTTGTAGCCGCGTCGTTAGAGTTGTGTATTCTTTTGTTTGCTTCCCATTCTCTTGATTGATTTTAAAGCTTCATGACATGGGACTTGCTATTTTCTCAGTTTTATCTGAGTTTTTTCTCCCCTCCCCCTCCCTCCACCTTTCTGTTTTGTGGTCATCATGTCGACGAACCGATTTTCGATATACCTTCTCTTAGTATTAGTAGATTGAGTTTGAGGATTGCCCTCCTGTGTTGCTGAACATGGTAAAAATGG-TCATCATGCATTGAAAAAATTTCATCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266946" ref_strand="+" ref_description="SGN-E266946 [cLEI-7-B15]">
      <seq>tgaatccggttctgacatatacagcaagcgagaagtgatacaaaagctgaggctacagttaaagagaagggacgaaacaatattagagatgcaagaacagattgtagagttgcaagcttctctcaatgctcagatgtcgcattctgctcatcagcagtcattgctggatgctgccaacagggatctgtttgattcggagagagagatacagaggctgaggaaggctattgcagatcattgtgttggacaagtaggttcgtgcgataagcccccaacagtacctgtatggccagctgaagtccgttatggtcatcatactaacggccaccttgaagttgataggaattcagatacttcagagaagggaagaggagatggagaaaggtttgaaatgctgaagcgcgaaaaagatgagttgaaagaagtgatcgaagggaaggattatctgatcaagaactacaaggagcaaaccgtcgagctttcaatcaaggtcaaggaactgcaacagagactggatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="57938" stop="56817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57638" g_stop="57117" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E266946" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57638" e_stop="57117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCCGGTTCTGACATATACAGCAAGCGAGAAGTGATACAAAAGCTGAGGCTACAGTTAAAGAGAAGGGACGAAACAATATTAGAGATGCAAGAACAGATTGTAGAGTTGCAAGCTTCTCTCAATGCTCAGATGTCGCATTCTGCTCATCAGCAGTCATTGCTGGATGCTGCCAACAGGGATCTGTTTGATTCGGAGAGAGAGATACAGAGGCTGAGGAAGGCTATTGCAGATCATTGTGTTGGACAAGTAGGTTCGTGCGATAAGCCCCCAACAGTACCTGTATGGCCAGCTGAAGTCCGTTATGGTCATCATACTAACGGCCACCTTGAAGTTGATAGGAATTCAGATACTTCAGAGAAGGGAAGAGGAGATGGAGAAAGGTTTGAAATGCTGAAGCGCGAAAAAGATGAGTTGAAAGAAGTGATCGAAGGGAAGGATTATCTGATCAAGAACTACAAGGAGCAAACCGTCGAGCTTTCAATCAAGGTCAAGGAACTGCAACAGAGACTGGATGCTCA</genome_strand>
        <mrna_strand>TGAATCCGGTTCTGACATATACAGCAAGCGAGAAGTGATACAAAAGCTGAGGCTACAGTTAAAGAGAAGGGACGAAACAATATTAGAGATGCAAGAACAGATTGTAGAGTTGCAAGCTTCTCTCAATGCTCAGATGTCGCATTCTGCTCATCAGCAGTCATTGCTGGATGCTGCCAACAGGGATCTGTTTGATTCGGAGAGAGAGATACAGAGGCTGAGGAAGGCTATTGCAGATCATTGTGTTGGACAAGTAGGTTCGTGCGATAAGCCCCCAACAGTACCTGTATGGCCAGCTGAAGTCCGTTATGGTCATCATACTAACGGCCACCTTGAAGTTGATAGGAATTCAGATACTTCAGAGAAGGGAAGAGGAGATGGAGAAAGGTTTGAAATGCTGAAGCGCGAAAAAGATGAGTTGAAAGAAGTGATCGAAGGGAAGGATTATCTGATCAAGAACTACAAGGAGCAAACCGTCGAGCTTTCAATCAAGGTCAAGGAACTGCAACAGAGACTGGATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727658" ref_strand="+" ref_description="SGN-E727658 [LA15BD06]">
      <seq>ctttacccaagcgttacttgtaatacgaaagaaacaaaaccctacaccagaaacatcttttatcagttcttggtcgatagatgcatcttcttgattaatcagaatacattatttcctgtgggatcttgctgtcattgttctgttactgtaatcagactcatgaaggtgtggcatcagcacttgacgtgaaggattactttcatgatctgcagcctctccatctactacttcagtgactatagaaatgaagccaagaaccaacggggtgtcaaggtcccagaagtccaatggtgttcagagtgagggtcctaactgggtcataattgcaggtagtgcgttattaagtacattatctgtacgcttagggtacaagctgaagcaggtgcttgattcaagacagccaaacaagacgaccagcagtttgaaaggaaatgaaaagtcttctgatggaagtaagttagggaatggtcatatgcagtcaagcacttactatttttcccaagatgatgatggctgctacaattgcaacacggaagctggaggattaggaattacaaagcagcagtataatgggtctgagcctgaaatggtgctccctctggtggcagttcctgccatcggattcaataaagagaatggtggggtttggtcaacctctcctgaccgtcttgaactaccacagaaaccatttcatcgctctaacagctctgagtcaccatgtgtctctgaatccggttctgacatatacagcaagcgagaagtgatacaaaagctgaggctacagttaaagagaaaggacgaaacaatattagagatgcaagaacagattgtagagttgcaagcttctctcaatgctcagatgtcgcattctgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="62825" stop="57189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62525" g_stop="62424" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62423" i_stop="59982" i_length="2442">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59981" g_stop="59893" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="191" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59892" i_stop="59236" i_length="657">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.550" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59235" g_stop="58999" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="428" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58998" i_stop="58918" i_length="81">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58917" g_stop="58813" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="533" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58812" i_stop="57832" i_length="981">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57831" g_stop="57489" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="876" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E727658" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62525" e_stop="62424"/>
          <exon e_start="59981" e_stop="59893"/>
          <exon e_start="59235" e_stop="58999"/>
          <exon e_start="58917" e_stop="58813"/>
          <exon e_start="57831" e_stop="57489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACCCAAGCGTTACTTGTAATACGAAAGAAACAAAACCCTACACCAGAAACATCTTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAGGTACTTTTTTGATGTACCCTTTTCGTTTTCTTGAATTTTAATGATGGGAATTTCATCTTGTGTTGGTTATGGTATCTGAGCTGTGTAGAAATTTGTTTGGGTGTTTGAATTTCATGTTTGCATTAGCTATGGTCTCTGAATTGTGCAGAAATTAGTTCTGCGTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGTATAGTCCAAGGATTGGGGAGGTTTTTTTCTTTTTGATATATATATAGCCTTTTGTGTCTTTGAATTTCATTTTGCATTGGCTATGGTCTCAGAAGTCCAAGGATTGGGGAGCTTAGCTTTGTTTTTTATAAATAAATTTTCGGGTCTTTGAATTTCATTTTGCATTGGGTATAGTCTCTGAACTGTGCAGAAATTAGTTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGATTAGAACAAGGATTGAGGAGCTTTTTTTTTTTATATATATATATAACCTTTTCGGGAATTTTTTGTGTGGGTAGTTTCATGTAACATTTGTTATGACCTGGTTAAGTATATGAAAATAAATGGTGTTTTTGTGTGTACTTGTGTTCTGTTTTTGTGATTGAATCTGTGGGTTTATGTTTCAGTTTTGTTTTCGTGAATTAGAGGTTTTATAGGTGCTCTTTTTTGTTGTATGGTAAGTCGGAGATAGCTAGAGTAGGTGGGTGATTGAATGTGATGTTGAAGGCACCTGTGTCTCAATGAGCCATTTGATATCCTAATGACCAACGAGGTGAACAATCTTTTAAATAGAGGAAGTTCAAAAGAAAGAGATGGACGACATATCTCAATTTCAATTTGTTAGACTAGGCAGCACATGTTTGTCATGGGATTGCAGATGTCGTACTGTGTGTCTTATATATTTGAGTTTGACTTTCTTTTTATTTAAAAGGTATAGTGTATTTCATTAGTAGCAATCAAGGAAGCAATCTATGTGAAGATAGTGCTTATGTAATGTGTGTTTAATGTGTTGCTTGTTAAAACTTCTGAATGCCACACTATCAGTAAGTATTTAACTTTCTCCTCCTTAGGCTAGAAGCAACTTCTAAGCTATGTTTTCCTTAGCAACTTTTAATTCTCATGTAACGACTTTTCGAGATTGCTTGTTCTGGTTTTATATGATCTAGTACAATCTATCTTGTGATGGAAGACTATTAAATAGATAATTGCATAATTGGGTTAGGTTAGTCATCAACTTCGAAAGTAAATGACTCCAATCTTATTGTCCGCTCATGCAAAAAGCTAGACTTTCTTGTCACTGTTTTCTTGCCTTTTCGTCATCTGAAGTCTAAACTCCAGGGAACTTTTATATGTTTCCAATTTCCTTATATCATTGTCACTCCGAATCTGCTAGTCTGCTAGTCTTCTAGTCTTCATGTGGATGGCTCTTATAGGCTTACTGCTTTGGTCTTATACGTGGAAAGCCTGACTCAGTAATCCTGTTAGCCATTTCAACTTCAGGTCTTCTTCCCTATATTGTCTCTGTCGTGTGTGTGTACTGTGTGACTTATATACTGCTGGTGCTATCAAGGTTCGAGTTTTACTCCGCGTTAAAGAATAATATATTTAGTTCTGGGCGCCATTTTGATTGTCGTAATCTGAATTAGCCATTTTAAGTAGAGGATCCAAGTTTGACACTATTAATTATGCTTTATTAGGTGCAATATTGTCATCGAAACTAGGACTATTCTGTTTTGTGGTTCAGGGGGAAGGAATATACCGTCGAATTTTAGGCCTTCTCTGATCGTTGTAAACCAATAATTTTTCTCTTTCCTTCAGATTTTCCTTGGATGAATAATTTCCTTTTTTTTTTCTCAAGCAACTTTCTCGTTAATTAGCTGACTATCCTGCCTTAGAGAATTATCTTCATGAACTGAGATTCCTTCCCCGTGTTACTTCTTCCTTCAAAATATTCAATTATCAATGGATATCTTAATTCACTGCGAAGAGGTTGGAAATGACCTTACAGCTTCCTCTTCTGCAACACATCAACCTTCTCCGTAGCTGTTATTTTTTGGATTCTTTGCTTTACCCTCATAAAGGTATTCGCAGCTGCATAGTTTATAGAGGAAGAACGAAACTGGTAAGGCCTCGACTGAGAGTAGCAGATGCAGTTACTGGTTTTAAGTTGTCACCATTTGTTTGAGTGACCTTGTGAAATGTGAACTATTGATTGATGCTATAAACTAATATCAATGATCCAAGTGAATGTAACTAATATCCTGAATGAGCAGTGTATTCCGAACATACAGCTTATTTAAATGAGCAAGCATGCAATAGGTTGCCGTAAATGCAATGCCAGCAGATCTGTCTACATGATCTTTTTTCTATTTGTACTTTAATTAATTATTTCTTCCCTTATTATACTGTCCTTATGGGTTATCGGTGCTGTACTTCCATTGCTTTTTCTTTCAGAATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAGGTATCCATGCTATCAGAATTGTATGATTGCAGTTAGTTTTCCTTCTGTGAACTAGGAATGTGTTGCTTGTTCTACACTTTGGTACTTATTCTTATGGGAATTTTGTTGCTTGTGCTACACTCTGGTACTTATTCTTCTGGTATCTTTTAGGAAAAAAGGGAAATAAAGTACAGATGTGAAACACACTATCAAGGATATGGAAACAAATTAATTATACATGTCCACCTATAGGTATTATAGAAAACTCCAGATCCTCCTTCAAATAGCTTACTTTACTTTTTGAGAACTTCAATAGCTTACTCTTTATTCCAGGAAAAAAAACTTCATTTCTCCCCTTCAGTCAAAAGCTCCAAATATTTTTGCCATTACAGATCCCACTTTTCATATATAAAGTATTGGCAATTTTATAAATAAAATGACTCAGAAAATCTACTCACGTGGAGCTAAACAGATACCATACTATATGTGGACAGCTTGACCTTGCATTTTCTGAGTCTTTTTCACTATCAAATGCCTGTTATGGCCTTGTTTGGCTGCAAAGTTTATTGTAGTTATAATGTTATATTTTTCAACAGCCTATAAGCATACTGATTTGAGTGCTCAGGTATTTGTGCTTCTCCTGGCATATATTGACGTTATTCCACATTTGCTATATAGGATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAAGCAGGTGCTTGATTCAAGACAGCCAAACAAGACGACCAGCAGTTTGAAAGGTCCTACATTGTTTAAAGCAATTTGGTTTGTCTTGTAAAATTATTTTGCCTCTTAGATATGAGAAATGGCTTAAATTGTAGGAAATGAAAAGTCTTCTGATGGAAGTAAGTTAGGGAATGGTCATATGCAGTCAAGCACTTACTATTTTTCCCAAGATGATGATGGCTGCTACAATTGCAACACGGGTATGCAAATTCTTGCCATCCCTTTGATGTTTTATCTTAGAATTTAGGTTGTTCTTTTTGGTGTAAAGAACGTGGCTAGTGATTTGATGTTGTCATCATCTTTTTCCTGTACTCCTGTTGATTGTAACTCCCAAATTTGCGAGAGAATGATTTGAACAAGTAAAGTTAATCACAGAGGCATCATCAACAATGTTTACATGTTAGTGTTGATTATTTGGTTGCTTTCTAACATGAAAATGAGACACGACACTCTTCAGAATTTAGACCTGTTTACAGTTATCTTACTCGCTTTAAGAAGTTTATGGTAATGTCAAGTGAAAGATTGAAACTGAGCTTATGTGATCAATATGATGATTTTCTTGGTATACACTATGCTGATTTTTCTTCAAAAACAGAAGGTTAATAAATTACCACTGCAGTTAGTCCAACAGCTAACCTTAAGGAAATAAAGAGTCATGGGAAAAGTCGAGTTCTATTTATGTCTAACCTTTTTGTTCCCATTTTGCTCATGCTTATTATTTGATCTTATGGTCCAGTTTGTTTGCTGAAATGTATACTACAACATCTTATGGGGTGTCACTGTTTCCTGCCATATTATGGGGCATGATTTGGGGTATCTCTGTTGGTGGCTCATGCAACTTACGTGTAGCCTAGTTCAACGTACAATTTTCTGGGAACTGCTAAGGTTTCTTTTTTCTCCCATTAGAACTCTTAAAGAGCCCTCAGGCCTTCAGTCTAGTGGACGCAACACAAGTTGTGTGAATAGGTCCTCTAGTTTTTTAGGTATCATTTGGTGGATTAGCTGACAATTCAGTATTTCTTGTGTTTTTTGAGTTTTGTTTTCATCTTATTATTTTTCTCAAGATTAGTGTGCTTGAAATGGTGTGATTAAATGTGCTTCCATCTCTTGTACATCTTACAATAGTCTATTAACTATTGTTGGCTACTTTTAGTGAACATTTGCTATTTTTATACTGACAGAAGCTGGAGGATTAGGAATTACAAAGCAGCAGTATAATGGGTCTGAGCCTGAAATGGTGCTCCCTCTGGTGGCAGTTCCTGCCATCGGATTCAATAAAGAGAATGGTGGGGTTTGGTCAACCTCTCCTGACCGTCTTGAACTACCACAGAAACCATTTCATCGCTCTAACAGCTCTGAGTCACCATGTGTCTCTGAATCCGGTTCTGACATATACAGCAAGCGAGAAGTGATACAAAAGCTGAGGCTACAGTTAAAGAGAAGGGACGAAACAATATTAGAGATGCAAGAACAGATTGTAGAGTTGCAAGCTTCTCTCAATGCTCAGATGTCGCATTCTGCTCA</genome_strand>
        <mrna_strand>CTTTACCCAAGCGTTACTTGTAATACGAAAGAAACAAAACCCTACACCAGAAACATCTTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAAGCAGGTGCTTGATTCAAGACAGCCAAACAAGACGACCAGCAGTTTGAAAG.................................................................................GAAATGAAAAGTCTTCTGATGGAAGTAAGTTAGGGAATGGTCATATGCAGTCAAGCACTTACTATTTTTCCCAAGATGATGATGGCTGCTACAATTGCAACACGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGGAGGATTAGGAATTACAAAGCAGCAGTATAATGGGTCTGAGCCTGAAATGGTGCTCCCTCTGGTGGCAGTTCCTGCCATCGGATTCAATAAAGAGAATGGTGGGGTTTGGTCAACCTCTCCTGACCGTCTTGAACTACCACAGAAACCATTTCATCGCTCTAACAGCTCTGAGTCACCATGTGTCTCTGAATCCGGTTCTGACATATACAGCAAGCGAGAAGTGATACAAAAGCTGAGGCTACAGTTAAAGAGAAAGGACGAAACAATATTAGAGATGCAAGAACAGATTGTAGAGTTGCAAGCTTCTCTCAATGCTCAGATGTCGCATTCTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544618" ref_strand="+" ref_description="SGN-E544618 [TUS-67-A17]">
      <seq>cagaaacatcttttatcagttcttggtcgatagatgcatcttcttgattaatcagaatacattatttcctgtgggatcttgctgtcattgttctgttactgtaatcagactcatgaaggtgtggcatcagcacttgacgtgaaggattactttcatgatctgcagcctctccatctactacttcagtgactatagaaatgaagccaagaaccaacggggtgtcaaggtcccagaagtccaatggtgttcagagtgagggtcctaactgggtcataattgcaggtagtgcgttattaagtacattatctgtacgcttagggtacaagctgaagcaggtgcttgattcaagacagccaaacaagacgaccagcagtttgaaaggaaatgaaaagtcttctgatggaagtaagttagggaatggtcatatgcagtcaagcacttactatttttcccaagatgatgatggctgctacaattgcaacacagaagctggaggattaggaattacaaagcagcagtataatgggtctgagcctgaaatggtgctccctctggtggcagttcctgccatcggattcaataaagagaatggtggggtttggtcaacctctcctgaccgtcttgaactaccacagataccatttcatcgctctaacagctctgagtcaccatgtgtctctgaatccggttctgacatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="62778" stop="57317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62478" g_stop="62424" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62423" i_stop="59982" i_length="2442">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59981" g_stop="59893" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="144" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59892" i_stop="59236" i_length="657">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.550" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59235" g_stop="58999" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="381" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58998" i_stop="58918" i_length="81">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58917" g_stop="58813" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="486" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58812" i_stop="57832" i_length="981">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57831" g_stop="57617" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="701" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E544618" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62478" e_stop="62424"/>
          <exon e_start="59981" e_stop="59893"/>
          <exon e_start="59235" e_stop="58999"/>
          <exon e_start="58917" e_stop="58813"/>
          <exon e_start="57831" e_stop="57617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACATCTTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAGGTACTTTTTTGATGTACCCTTTTCGTTTTCTTGAATTTTAATGATGGGAATTTCATCTTGTGTTGGTTATGGTATCTGAGCTGTGTAGAAATTTGTTTGGGTGTTTGAATTTCATGTTTGCATTAGCTATGGTCTCTGAATTGTGCAGAAATTAGTTCTGCGTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGTATAGTCCAAGGATTGGGGAGGTTTTTTTCTTTTTGATATATATATAGCCTTTTGTGTCTTTGAATTTCATTTTGCATTGGCTATGGTCTCAGAAGTCCAAGGATTGGGGAGCTTAGCTTTGTTTTTTATAAATAAATTTTCGGGTCTTTGAATTTCATTTTGCATTGGGTATAGTCTCTGAACTGTGCAGAAATTAGTTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGATTAGAACAAGGATTGAGGAGCTTTTTTTTTTTATATATATATATAACCTTTTCGGGAATTTTTTGTGTGGGTAGTTTCATGTAACATTTGTTATGACCTGGTTAAGTATATGAAAATAAATGGTGTTTTTGTGTGTACTTGTGTTCTGTTTTTGTGATTGAATCTGTGGGTTTATGTTTCAGTTTTGTTTTCGTGAATTAGAGGTTTTATAGGTGCTCTTTTTTGTTGTATGGTAAGTCGGAGATAGCTAGAGTAGGTGGGTGATTGAATGTGATGTTGAAGGCACCTGTGTCTCAATGAGCCATTTGATATCCTAATGACCAACGAGGTGAACAATCTTTTAAATAGAGGAAGTTCAAAAGAAAGAGATGGACGACATATCTCAATTTCAATTTGTTAGACTAGGCAGCACATGTTTGTCATGGGATTGCAGATGTCGTACTGTGTGTCTTATATATTTGAGTTTGACTTTCTTTTTATTTAAAAGGTATAGTGTATTTCATTAGTAGCAATCAAGGAAGCAATCTATGTGAAGATAGTGCTTATGTAATGTGTGTTTAATGTGTTGCTTGTTAAAACTTCTGAATGCCACACTATCAGTAAGTATTTAACTTTCTCCTCCTTAGGCTAGAAGCAACTTCTAAGCTATGTTTTCCTTAGCAACTTTTAATTCTCATGTAACGACTTTTCGAGATTGCTTGTTCTGGTTTTATATGATCTAGTACAATCTATCTTGTGATGGAAGACTATTAAATAGATAATTGCATAATTGGGTTAGGTTAGTCATCAACTTCGAAAGTAAATGACTCCAATCTTATTGTCCGCTCATGCAAAAAGCTAGACTTTCTTGTCACTGTTTTCTTGCCTTTTCGTCATCTGAAGTCTAAACTCCAGGGAACTTTTATATGTTTCCAATTTCCTTATATCATTGTCACTCCGAATCTGCTAGTCTGCTAGTCTTCTAGTCTTCATGTGGATGGCTCTTATAGGCTTACTGCTTTGGTCTTATACGTGGAAAGCCTGACTCAGTAATCCTGTTAGCCATTTCAACTTCAGGTCTTCTTCCCTATATTGTCTCTGTCGTGTGTGTGTACTGTGTGACTTATATACTGCTGGTGCTATCAAGGTTCGAGTTTTACTCCGCGTTAAAGAATAATATATTTAGTTCTGGGCGCCATTTTGATTGTCGTAATCTGAATTAGCCATTTTAAGTAGAGGATCCAAGTTTGACACTATTAATTATGCTTTATTAGGTGCAATATTGTCATCGAAACTAGGACTATTCTGTTTTGTGGTTCAGGGGGAAGGAATATACCGTCGAATTTTAGGCCTTCTCTGATCGTTGTAAACCAATAATTTTTCTCTTTCCTTCAGATTTTCCTTGGATGAATAATTTCCTTTTTTTTTTCTCAAGCAACTTTCTCGTTAATTAGCTGACTATCCTGCCTTAGAGAATTATCTTCATGAACTGAGATTCCTTCCCCGTGTTACTTCTTCCTTCAAAATATTCAATTATCAATGGATATCTTAATTCACTGCGAAGAGGTTGGAAATGACCTTACAGCTTCCTCTTCTGCAACACATCAACCTTCTCCGTAGCTGTTATTTTTTGGATTCTTTGCTTTACCCTCATAAAGGTATTCGCAGCTGCATAGTTTATAGAGGAAGAACGAAACTGGTAAGGCCTCGACTGAGAGTAGCAGATGCAGTTACTGGTTTTAAGTTGTCACCATTTGTTTGAGTGACCTTGTGAAATGTGAACTATTGATTGATGCTATAAACTAATATCAATGATCCAAGTGAATGTAACTAATATCCTGAATGAGCAGTGTATTCCGAACATACAGCTTATTTAAATGAGCAAGCATGCAATAGGTTGCCGTAAATGCAATGCCAGCAGATCTGTCTACATGATCTTTTTTCTATTTGTACTTTAATTAATTATTTCTTCCCTTATTATACTGTCCTTATGGGTTATCGGTGCTGTACTTCCATTGCTTTTTCTTTCAGAATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAGGTATCCATGCTATCAGAATTGTATGATTGCAGTTAGTTTTCCTTCTGTGAACTAGGAATGTGTTGCTTGTTCTACACTTTGGTACTTATTCTTATGGGAATTTTGTTGCTTGTGCTACACTCTGGTACTTATTCTTCTGGTATCTTTTAGGAAAAAAGGGAAATAAAGTACAGATGTGAAACACACTATCAAGGATATGGAAACAAATTAATTATACATGTCCACCTATAGGTATTATAGAAAACTCCAGATCCTCCTTCAAATAGCTTACTTTACTTTTTGAGAACTTCAATAGCTTACTCTTTATTCCAGGAAAAAAAACTTCATTTCTCCCCTTCAGTCAAAAGCTCCAAATATTTTTGCCATTACAGATCCCACTTTTCATATATAAAGTATTGGCAATTTTATAAATAAAATGACTCAGAAAATCTACTCACGTGGAGCTAAACAGATACCATACTATATGTGGACAGCTTGACCTTGCATTTTCTGAGTCTTTTTCACTATCAAATGCCTGTTATGGCCTTGTTTGGCTGCAAAGTTTATTGTAGTTATAATGTTATATTTTTCAACAGCCTATAAGCATACTGATTTGAGTGCTCAGGTATTTGTGCTTCTCCTGGCATATATTGACGTTATTCCACATTTGCTATATAGGATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAAGCAGGTGCTTGATTCAAGACAGCCAAACAAGACGACCAGCAGTTTGAAAGGTCCTACATTGTTTAAAGCAATTTGGTTTGTCTTGTAAAATTATTTTGCCTCTTAGATATGAGAAATGGCTTAAATTGTAGGAAATGAAAAGTCTTCTGATGGAAGTAAGTTAGGGAATGGTCATATGCAGTCAAGCACTTACTATTTTTCCCAAGATGATGATGGCTGCTACAATTGCAACACGGGTATGCAAATTCTTGCCATCCCTTTGATGTTTTATCTTAGAATTTAGGTTGTTCTTTTTGGTGTAAAGAACGTGGCTAGTGATTTGATGTTGTCATCATCTTTTTCCTGTACTCCTGTTGATTGTAACTCCCAAATTTGCGAGAGAATGATTTGAACAAGTAAAGTTAATCACAGAGGCATCATCAACAATGTTTACATGTTAGTGTTGATTATTTGGTTGCTTTCTAACATGAAAATGAGACACGACACTCTTCAGAATTTAGACCTGTTTACAGTTATCTTACTCGCTTTAAGAAGTTTATGGTAATGTCAAGTGAAAGATTGAAACTGAGCTTATGTGATCAATATGATGATTTTCTTGGTATACACTATGCTGATTTTTCTTCAAAAACAGAAGGTTAATAAATTACCACTGCAGTTAGTCCAACAGCTAACCTTAAGGAAATAAAGAGTCATGGGAAAAGTCGAGTTCTATTTATGTCTAACCTTTTTGTTCCCATTTTGCTCATGCTTATTATTTGATCTTATGGTCCAGTTTGTTTGCTGAAATGTATACTACAACATCTTATGGGGTGTCACTGTTTCCTGCCATATTATGGGGCATGATTTGGGGTATCTCTGTTGGTGGCTCATGCAACTTACGTGTAGCCTAGTTCAACGTACAATTTTCTGGGAACTGCTAAGGTTTCTTTTTTCTCCCATTAGAACTCTTAAAGAGCCCTCAGGCCTTCAGTCTAGTGGACGCAACACAAGTTGTGTGAATAGGTCCTCTAGTTTTTTAGGTATCATTTGGTGGATTAGCTGACAATTCAGTATTTCTTGTGTTTTTTGAGTTTTGTTTTCATCTTATTATTTTTCTCAAGATTAGTGTGCTTGAAATGGTGTGATTAAATGTGCTTCCATCTCTTGTACATCTTACAATAGTCTATTAACTATTGTTGGCTACTTTTAGTGAACATTTGCTATTTTTATACTGACAGAAGCTGGAGGATTAGGAATTACAAAGCAGCAGTATAATGGGTCTGAGCCTGAAATGGTGCTCCCTCTGGTGGCAGTTCCTGCCATCGGATTCAATAAAGAGAATGGTGGGGTTTGGTCAACCTCTCCTGACCGTCTTGAACTACCACAGAAACCATTTCATCGCTCTAACAGCTCTGAGTCACCATGTGTCTCTGAATCCGGTTCTGACATATAC</genome_strand>
        <mrna_strand>CAGAAACATCTTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAAGCAGGTGCTTGATTCAAGACAGCCAAACAAGACGACCAGCAGTTTGAAAG.................................................................................GAAATGAAAAGTCTTCTGATGGAAGTAAGTTAGGGAATGGTCATATGCAGTCAAGCACTTACTATTTTTCCCAAGATGATGATGGCTGCTACAATTGCAACACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGGAGGATTAGGAATTACAAAGCAGCAGTATAATGGGTCTGAGCCTGAAATGGTGCTCCCTCTGGTGGCAGTTCCTGCCATCGGATTCAATAAAGAGAATGGTGGGGTTTGGTCAACCTCTCCTGACCGTCTTGAACTACCACAGATACCATTTCATCGCTCTAACAGCTCTGAGTCACCATGTGTCTCTGAATCCGGTTCTGACATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331317" ref_strand="+" ref_description="SGN-E331317 [cTOD-6-N20]">
      <seq>tacaccagaaacatcttttatcagttcttggtcgatagatgcatcttcttgattaatcagaatacattatttcctgtgggatcttgctgtcattgttctgttactgtaatcagactcatgaaggtgtggcatcagcacttgacgtgaaggattactttcatgatctgcagcctctccatctactacttcagtgactatagaaatgaagccaagaaccaacggggtgtcaaggtcccagaagtccaatggtgttcagagtgagggtcctaactgggtcataattgcaggtagtgcgttattaagtacattatctgtacgcttagggtacaagctgaagcaggtgcttgattcaagacagccaaacaagacgaccagcagtttgaaaggaaatgaaaagtcttctgatggaagtaagttagggaatggtcatatgcagtcaagcacttactatttttcccaagatgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="62783" stop="58534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62483" g_stop="62424" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62423" i_stop="59982" i_length="2442">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59981" g_stop="59893" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="149" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59892" i_stop="59236" i_length="657">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.550" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59235" g_stop="58999" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="386" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58998" i_stop="58918" i_length="81">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58917" g_stop="58834" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="470" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E331317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62483" e_stop="62424"/>
          <exon e_start="59981" e_stop="59893"/>
          <exon e_start="59235" e_stop="58999"/>
          <exon e_start="58917" e_stop="58834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCAGAAACATCTTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAGGTACTTTTTTGATGTACCCTTTTCGTTTTCTTGAATTTTAATGATGGGAATTTCATCTTGTGTTGGTTATGGTATCTGAGCTGTGTAGAAATTTGTTTGGGTGTTTGAATTTCATGTTTGCATTAGCTATGGTCTCTGAATTGTGCAGAAATTAGTTCTGCGTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGTATAGTCCAAGGATTGGGGAGGTTTTTTTCTTTTTGATATATATATAGCCTTTTGTGTCTTTGAATTTCATTTTGCATTGGCTATGGTCTCAGAAGTCCAAGGATTGGGGAGCTTAGCTTTGTTTTTTATAAATAAATTTTCGGGTCTTTGAATTTCATTTTGCATTGGGTATAGTCTCTGAACTGTGCAGAAATTAGTTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGATTAGAACAAGGATTGAGGAGCTTTTTTTTTTTATATATATATATAACCTTTTCGGGAATTTTTTGTGTGGGTAGTTTCATGTAACATTTGTTATGACCTGGTTAAGTATATGAAAATAAATGGTGTTTTTGTGTGTACTTGTGTTCTGTTTTTGTGATTGAATCTGTGGGTTTATGTTTCAGTTTTGTTTTCGTGAATTAGAGGTTTTATAGGTGCTCTTTTTTGTTGTATGGTAAGTCGGAGATAGCTAGAGTAGGTGGGTGATTGAATGTGATGTTGAAGGCACCTGTGTCTCAATGAGCCATTTGATATCCTAATGACCAACGAGGTGAACAATCTTTTAAATAGAGGAAGTTCAAAAGAAAGAGATGGACGACATATCTCAATTTCAATTTGTTAGACTAGGCAGCACATGTTTGTCATGGGATTGCAGATGTCGTACTGTGTGTCTTATATATTTGAGTTTGACTTTCTTTTTATTTAAAAGGTATAGTGTATTTCATTAGTAGCAATCAAGGAAGCAATCTATGTGAAGATAGTGCTTATGTAATGTGTGTTTAATGTGTTGCTTGTTAAAACTTCTGAATGCCACACTATCAGTAAGTATTTAACTTTCTCCTCCTTAGGCTAGAAGCAACTTCTAAGCTATGTTTTCCTTAGCAACTTTTAATTCTCATGTAACGACTTTTCGAGATTGCTTGTTCTGGTTTTATATGATCTAGTACAATCTATCTTGTGATGGAAGACTATTAAATAGATAATTGCATAATTGGGTTAGGTTAGTCATCAACTTCGAAAGTAAATGACTCCAATCTTATTGTCCGCTCATGCAAAAAGCTAGACTTTCTTGTCACTGTTTTCTTGCCTTTTCGTCATCTGAAGTCTAAACTCCAGGGAACTTTTATATGTTTCCAATTTCCTTATATCATTGTCACTCCGAATCTGCTAGTCTGCTAGTCTTCTAGTCTTCATGTGGATGGCTCTTATAGGCTTACTGCTTTGGTCTTATACGTGGAAAGCCTGACTCAGTAATCCTGTTAGCCATTTCAACTTCAGGTCTTCTTCCCTATATTGTCTCTGTCGTGTGTGTGTACTGTGTGACTTATATACTGCTGGTGCTATCAAGGTTCGAGTTTTACTCCGCGTTAAAGAATAATATATTTAGTTCTGGGCGCCATTTTGATTGTCGTAATCTGAATTAGCCATTTTAAGTAGAGGATCCAAGTTTGACACTATTAATTATGCTTTATTAGGTGCAATATTGTCATCGAAACTAGGACTATTCTGTTTTGTGGTTCAGGGGGAAGGAATATACCGTCGAATTTTAGGCCTTCTCTGATCGTTGTAAACCAATAATTTTTCTCTTTCCTTCAGATTTTCCTTGGATGAATAATTTCCTTTTTTTTTTCTCAAGCAACTTTCTCGTTAATTAGCTGACTATCCTGCCTTAGAGAATTATCTTCATGAACTGAGATTCCTTCCCCGTGTTACTTCTTCCTTCAAAATATTCAATTATCAATGGATATCTTAATTCACTGCGAAGAGGTTGGAAATGACCTTACAGCTTCCTCTTCTGCAACACATCAACCTTCTCCGTAGCTGTTATTTTTTGGATTCTTTGCTTTACCCTCATAAAGGTATTCGCAGCTGCATAGTTTATAGAGGAAGAACGAAACTGGTAAGGCCTCGACTGAGAGTAGCAGATGCAGTTACTGGTTTTAAGTTGTCACCATTTGTTTGAGTGACCTTGTGAAATGTGAACTATTGATTGATGCTATAAACTAATATCAATGATCCAAGTGAATGTAACTAATATCCTGAATGAGCAGTGTATTCCGAACATACAGCTTATTTAAATGAGCAAGCATGCAATAGGTTGCCGTAAATGCAATGCCAGCAGATCTGTCTACATGATCTTTTTTCTATTTGTACTTTAATTAATTATTTCTTCCCTTATTATACTGTCCTTATGGGTTATCGGTGCTGTACTTCCATTGCTTTTTCTTTCAGAATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAGGTATCCATGCTATCAGAATTGTATGATTGCAGTTAGTTTTCCTTCTGTGAACTAGGAATGTGTTGCTTGTTCTACACTTTGGTACTTATTCTTATGGGAATTTTGTTGCTTGTGCTACACTCTGGTACTTATTCTTCTGGTATCTTTTAGGAAAAAAGGGAAATAAAGTACAGATGTGAAACACACTATCAAGGATATGGAAACAAATTAATTATACATGTCCACCTATAGGTATTATAGAAAACTCCAGATCCTCCTTCAAATAGCTTACTTTACTTTTTGAGAACTTCAATAGCTTACTCTTTATTCCAGGAAAAAAAACTTCATTTCTCCCCTTCAGTCAAAAGCTCCAAATATTTTTGCCATTACAGATCCCACTTTTCATATATAAAGTATTGGCAATTTTATAAATAAAATGACTCAGAAAATCTACTCACGTGGAGCTAAACAGATACCATACTATATGTGGACAGCTTGACCTTGCATTTTCTGAGTCTTTTTCACTATCAAATGCCTGTTATGGCCTTGTTTGGCTGCAAAGTTTATTGTAGTTATAATGTTATATTTTTCAACAGCCTATAAGCATACTGATTTGAGTGCTCAGGTATTTGTGCTTCTCCTGGCATATATTGACGTTATTCCACATTTGCTATATAGGATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAAGCAGGTGCTTGATTCAAGACAGCCAAACAAGACGACCAGCAGTTTGAAAGGTCCTACATTGTTTAAAGCAATTTGGTTTGTCTTGTAAAATTATTTTGCCTCTTAGATATGAGAAATGGCTTAAATTGTAGGAAATGAAAAGTCTTCTGATGGAAGTAAGTTAGGGAATGGTCATATGCAGTCAAGCACTTACTATTTTTCCCAAGATGATGATG</genome_strand>
        <mrna_strand>TACACCAGAAACATCTTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAAGCAGGTGCTTGATTCAAGACAGCCAAACAAGACGACCAGCAGTTTGAAAG.................................................................................GAAATGAAAAGTCTTCTGATGGAAGTAAGTTAGGGAATGGTCATATGCAGTCAAGCACTTACTATTTTTCCCAAGATGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256443" ref_strand="+" ref_description="SGN-E256443 [cLEG-38-M8]">
      <seq>ttttatcagttcttggtcgatagatgcatcttcttgattaatcagaatacattatttcctgtgggatcttgctgtcattgttctgttactgtaatcagactcatgaaggtgtggcatcagcacttgacgtgaaggattactttcatgatctgcagcctctccatctactacttcagtgactatagaaatgaagccaagaaccaacggggtgtcaaggtcccagaagtccaatggtgttcagagtgagggtcctaactgggtcataattgcaggtagtgcgttattaagtacattatctgtacgcttagggtacaagctgaagcaggtgcttgattcaagacagccaaacaagacgaccagcagtttgaaaggaaatgaaaagtcttctgatggaagtaagttagggaatggtcatatgcagtcaagcacttactatttttcccaagatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="62768" stop="58535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62468" g_stop="62424" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62423" i_stop="59982" i_length="2442">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59981" g_stop="59893" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="134" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59892" i_stop="59236" i_length="657">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.550" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59235" g_stop="58999" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="371" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58998" i_stop="58918" i_length="81">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58917" g_stop="58835" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="454" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E256443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62468" e_stop="62424"/>
          <exon e_start="59981" e_stop="59893"/>
          <exon e_start="59235" e_stop="58999"/>
          <exon e_start="58917" e_stop="58835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAGGTACTTTTTTGATGTACCCTTTTCGTTTTCTTGAATTTTAATGATGGGAATTTCATCTTGTGTTGGTTATGGTATCTGAGCTGTGTAGAAATTTGTTTGGGTGTTTGAATTTCATGTTTGCATTAGCTATGGTCTCTGAATTGTGCAGAAATTAGTTCTGCGTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGTATAGTCCAAGGATTGGGGAGGTTTTTTTCTTTTTGATATATATATAGCCTTTTGTGTCTTTGAATTTCATTTTGCATTGGCTATGGTCTCAGAAGTCCAAGGATTGGGGAGCTTAGCTTTGTTTTTTATAAATAAATTTTCGGGTCTTTGAATTTCATTTTGCATTGGGTATAGTCTCTGAACTGTGCAGAAATTAGTTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGATTAGAACAAGGATTGAGGAGCTTTTTTTTTTTATATATATATATAACCTTTTCGGGAATTTTTTGTGTGGGTAGTTTCATGTAACATTTGTTATGACCTGGTTAAGTATATGAAAATAAATGGTGTTTTTGTGTGTACTTGTGTTCTGTTTTTGTGATTGAATCTGTGGGTTTATGTTTCAGTTTTGTTTTCGTGAATTAGAGGTTTTATAGGTGCTCTTTTTTGTTGTATGGTAAGTCGGAGATAGCTAGAGTAGGTGGGTGATTGAATGTGATGTTGAAGGCACCTGTGTCTCAATGAGCCATTTGATATCCTAATGACCAACGAGGTGAACAATCTTTTAAATAGAGGAAGTTCAAAAGAAAGAGATGGACGACATATCTCAATTTCAATTTGTTAGACTAGGCAGCACATGTTTGTCATGGGATTGCAGATGTCGTACTGTGTGTCTTATATATTTGAGTTTGACTTTCTTTTTATTTAAAAGGTATAGTGTATTTCATTAGTAGCAATCAAGGAAGCAATCTATGTGAAGATAGTGCTTATGTAATGTGTGTTTAATGTGTTGCTTGTTAAAACTTCTGAATGCCACACTATCAGTAAGTATTTAACTTTCTCCTCCTTAGGCTAGAAGCAACTTCTAAGCTATGTTTTCCTTAGCAACTTTTAATTCTCATGTAACGACTTTTCGAGATTGCTTGTTCTGGTTTTATATGATCTAGTACAATCTATCTTGTGATGGAAGACTATTAAATAGATAATTGCATAATTGGGTTAGGTTAGTCATCAACTTCGAAAGTAAATGACTCCAATCTTATTGTCCGCTCATGCAAAAAGCTAGACTTTCTTGTCACTGTTTTCTTGCCTTTTCGTCATCTGAAGTCTAAACTCCAGGGAACTTTTATATGTTTCCAATTTCCTTATATCATTGTCACTCCGAATCTGCTAGTCTGCTAGTCTTCTAGTCTTCATGTGGATGGCTCTTATAGGCTTACTGCTTTGGTCTTATACGTGGAAAGCCTGACTCAGTAATCCTGTTAGCCATTTCAACTTCAGGTCTTCTTCCCTATATTGTCTCTGTCGTGTGTGTGTACTGTGTGACTTATATACTGCTGGTGCTATCAAGGTTCGAGTTTTACTCCGCGTTAAAGAATAATATATTTAGTTCTGGGCGCCATTTTGATTGTCGTAATCTGAATTAGCCATTTTAAGTAGAGGATCCAAGTTTGACACTATTAATTATGCTTTATTAGGTGCAATATTGTCATCGAAACTAGGACTATTCTGTTTTGTGGTTCAGGGGGAAGGAATATACCGTCGAATTTTAGGCCTTCTCTGATCGTTGTAAACCAATAATTTTTCTCTTTCCTTCAGATTTTCCTTGGATGAATAATTTCCTTTTTTTTTTCTCAAGCAACTTTCTCGTTAATTAGCTGACTATCCTGCCTTAGAGAATTATCTTCATGAACTGAGATTCCTTCCCCGTGTTACTTCTTCCTTCAAAATATTCAATTATCAATGGATATCTTAATTCACTGCGAAGAGGTTGGAAATGACCTTACAGCTTCCTCTTCTGCAACACATCAACCTTCTCCGTAGCTGTTATTTTTTGGATTCTTTGCTTTACCCTCATAAAGGTATTCGCAGCTGCATAGTTTATAGAGGAAGAACGAAACTGGTAAGGCCTCGACTGAGAGTAGCAGATGCAGTTACTGGTTTTAAGTTGTCACCATTTGTTTGAGTGACCTTGTGAAATGTGAACTATTGATTGATGCTATAAACTAATATCAATGATCCAAGTGAATGTAACTAATATCCTGAATGAGCAGTGTATTCCGAACATACAGCTTATTTAAATGAGCAAGCATGCAATAGGTTGCCGTAAATGCAATGCCAGCAGATCTGTCTACATGATCTTTTTTCTATTTGTACTTTAATTAATTATTTCTTCCCTTATTATACTGTCCTTATGGGTTATCGGTGCTGTACTTCCATTGCTTTTTCTTTCAGAATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAGGTATCCATGCTATCAGAATTGTATGATTGCAGTTAGTTTTCCTTCTGTGAACTAGGAATGTGTTGCTTGTTCTACACTTTGGTACTTATTCTTATGGGAATTTTGTTGCTTGTGCTACACTCTGGTACTTATTCTTCTGGTATCTTTTAGGAAAAAAGGGAAATAAAGTACAGATGTGAAACACACTATCAAGGATATGGAAACAAATTAATTATACATGTCCACCTATAGGTATTATAGAAAACTCCAGATCCTCCTTCAAATAGCTTACTTTACTTTTTGAGAACTTCAATAGCTTACTCTTTATTCCAGGAAAAAAAACTTCATTTCTCCCCTTCAGTCAAAAGCTCCAAATATTTTTGCCATTACAGATCCCACTTTTCATATATAAAGTATTGGCAATTTTATAAATAAAATGACTCAGAAAATCTACTCACGTGGAGCTAAACAGATACCATACTATATGTGGACAGCTTGACCTTGCATTTTCTGAGTCTTTTTCACTATCAAATGCCTGTTATGGCCTTGTTTGGCTGCAAAGTTTATTGTAGTTATAATGTTATATTTTTCAACAGCCTATAAGCATACTGATTTGAGTGCTCAGGTATTTGTGCTTCTCCTGGCATATATTGACGTTATTCCACATTTGCTATATAGGATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAAGCAGGTGCTTGATTCAAGACAGCCAAACAAGACGACCAGCAGTTTGAAAGGTCCTACATTGTTTAAAGCAATTTGGTTTGTCTTGTAAAATTATTTTGCCTCTTAGATATGAGAAATGGCTTAAATTGTAGGAAATGAAAAGTCTTCTGATGGAAGTAAGTTAGGGAATGGTCATATGCAGTCAAGCACTTACTATTTTTCCCAAGATGATGAT</genome_strand>
        <mrna_strand>TTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAAGCAGGTGCTTGATTCAAGACAGCCAAACAAGACGACCAGCAGTTTGAAAG.................................................................................GAAATGAAAAGTCTTCTGATGGAAGTAAGTTAGGGAATGGTCATATGCAGTCAAGCACTTACTATTTTTCCCAAGATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306007" ref_strand="+" ref_description="SGN-E306007 [cLEY-17-B16]">
      <seq>aaacatcttttatcagttcttggtcgatagatgcatctttttgattaatcagaatacattatttcctgtgggatcttgctgtcattgttctgttactgtaatcagactcatgaaggtgtggcatcagcacttgacgtgaaggattactttcatgatctgcagcctctccatctactacttcagtgactatagaaatgaagccaagaaccaacggggtgtcaaggtcccagaagtccaatggtgttcacagtgagggtcctaacttggtcataattgcaggtagcgcgatattaagtacattatctgtgcgcttatggtacaagctgaaacaggtgcttgattcaagacagccaatcgagacgaccagcagttcgaaaggaaatgaaaagtcttctgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="62775" stop="58595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62475" g_stop="62424" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62423" i_stop="59982" i_length="2442">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59981" g_stop="59893" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="141" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59892" i_stop="59236" i_length="657">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.550" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59235" g_stop="58999" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="378" r_length="237" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58998" i_stop="58918" i_length="81">
            <donor d_prob="0.955" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58917" g_stop="58895" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="401" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E306007" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62475" e_stop="62424"/>
          <exon e_start="59981" e_stop="59893"/>
          <exon e_start="59235" e_stop="58999"/>
          <exon e_start="58917" e_stop="58895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCTTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAGGTACTTTTTTGATGTACCCTTTTCGTTTTCTTGAATTTTAATGATGGGAATTTCATCTTGTGTTGGTTATGGTATCTGAGCTGTGTAGAAATTTGTTTGGGTGTTTGAATTTCATGTTTGCATTAGCTATGGTCTCTGAATTGTGCAGAAATTAGTTCTGCGTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGTATAGTCCAAGGATTGGGGAGGTTTTTTTCTTTTTGATATATATATAGCCTTTTGTGTCTTTGAATTTCATTTTGCATTGGCTATGGTCTCAGAAGTCCAAGGATTGGGGAGCTTAGCTTTGTTTTTTATAAATAAATTTTCGGGTCTTTGAATTTCATTTTGCATTGGGTATAGTCTCTGAACTGTGCAGAAATTAGTTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGATTAGAACAAGGATTGAGGAGCTTTTTTTTTTTATATATATATATAACCTTTTCGGGAATTTTTTGTGTGGGTAGTTTCATGTAACATTTGTTATGACCTGGTTAAGTATATGAAAATAAATGGTGTTTTTGTGTGTACTTGTGTTCTGTTTTTGTGATTGAATCTGTGGGTTTATGTTTCAGTTTTGTTTTCGTGAATTAGAGGTTTTATAGGTGCTCTTTTTTGTTGTATGGTAAGTCGGAGATAGCTAGAGTAGGTGGGTGATTGAATGTGATGTTGAAGGCACCTGTGTCTCAATGAGCCATTTGATATCCTAATGACCAACGAGGTGAACAATCTTTTAAATAGAGGAAGTTCAAAAGAAAGAGATGGACGACATATCTCAATTTCAATTTGTTAGACTAGGCAGCACATGTTTGTCATGGGATTGCAGATGTCGTACTGTGTGTCTTATATATTTGAGTTTGACTTTCTTTTTATTTAAAAGGTATAGTGTATTTCATTAGTAGCAATCAAGGAAGCAATCTATGTGAAGATAGTGCTTATGTAATGTGTGTTTAATGTGTTGCTTGTTAAAACTTCTGAATGCCACACTATCAGTAAGTATTTAACTTTCTCCTCCTTAGGCTAGAAGCAACTTCTAAGCTATGTTTTCCTTAGCAACTTTTAATTCTCATGTAACGACTTTTCGAGATTGCTTGTTCTGGTTTTATATGATCTAGTACAATCTATCTTGTGATGGAAGACTATTAAATAGATAATTGCATAATTGGGTTAGGTTAGTCATCAACTTCGAAAGTAAATGACTCCAATCTTATTGTCCGCTCATGCAAAAAGCTAGACTTTCTTGTCACTGTTTTCTTGCCTTTTCGTCATCTGAAGTCTAAACTCCAGGGAACTTTTATATGTTTCCAATTTCCTTATATCATTGTCACTCCGAATCTGCTAGTCTGCTAGTCTTCTAGTCTTCATGTGGATGGCTCTTATAGGCTTACTGCTTTGGTCTTATACGTGGAAAGCCTGACTCAGTAATCCTGTTAGCCATTTCAACTTCAGGTCTTCTTCCCTATATTGTCTCTGTCGTGTGTGTGTACTGTGTGACTTATATACTGCTGGTGCTATCAAGGTTCGAGTTTTACTCCGCGTTAAAGAATAATATATTTAGTTCTGGGCGCCATTTTGATTGTCGTAATCTGAATTAGCCATTTTAAGTAGAGGATCCAAGTTTGACACTATTAATTATGCTTTATTAGGTGCAATATTGTCATCGAAACTAGGACTATTCTGTTTTGTGGTTCAGGGGGAAGGAATATACCGTCGAATTTTAGGCCTTCTCTGATCGTTGTAAACCAATAATTTTTCTCTTTCCTTCAGATTTTCCTTGGATGAATAATTTCCTTTTTTTTTTCTCAAGCAACTTTCTCGTTAATTAGCTGACTATCCTGCCTTAGAGAATTATCTTCATGAACTGAGATTCCTTCCCCGTGTTACTTCTTCCTTCAAAATATTCAATTATCAATGGATATCTTAATTCACTGCGAAGAGGTTGGAAATGACCTTACAGCTTCCTCTTCTGCAACACATCAACCTTCTCCGTAGCTGTTATTTTTTGGATTCTTTGCTTTACCCTCATAAAGGTATTCGCAGCTGCATAGTTTATAGAGGAAGAACGAAACTGGTAAGGCCTCGACTGAGAGTAGCAGATGCAGTTACTGGTTTTAAGTTGTCACCATTTGTTTGAGTGACCTTGTGAAATGTGAACTATTGATTGATGCTATAAACTAATATCAATGATCCAAGTGAATGTAACTAATATCCTGAATGAGCAGTGTATTCCGAACATACAGCTTATTTAAATGAGCAAGCATGCAATAGGTTGCCGTAAATGCAATGCCAGCAGATCTGTCTACATGATCTTTTTTCTATTTGTACTTTAATTAATTATTTCTTCCCTTATTATACTGTCCTTATGGGTTATCGGTGCTGTACTTCCATTGCTTTTTCTTTCAGAATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAGGTATCCATGCTATCAGAATTGTATGATTGCAGTTAGTTTTCCTTCTGTGAACTAGGAATGTGTTGCTTGTTCTACACTTTGGTACTTATTCTTATGGGAATTTTGTTGCTTGTGCTACACTCTGGTACTTATTCTTCTGGTATCTTTTAGGAAAAAAGGGAAATAAAGTACAGATGTGAAACACACTATCAAGGATATGGAAACAAATTAATTATACATGTCCACCTATAGGTATTATAGAAAACTCCAGATCCTCCTTCAAATAGCTTACTTTACTTTTTGAGAACTTCAATAGCTTACTCTTTATTCCAGGAAAAAAAACTTCATTTCTCCCCTTCAGTCAAAAGCTCCAAATATTTTTGCCATTACAGATCCCACTTTTCATATATAAAGTATTGGCAATTTTATAAATAAAATGACTCAGAAAATCTACTCACGTGGAGCTAAACAGATACCATACTATATGTGGACAGCTTGACCTTGCATTTTCTGAGTCTTTTTCACTATCAAATGCCTGTTATGGCCTTGTTTGGCTGCAAAGTTTATTGTAGTTATAATGTTATATTTTTCAACAGCCTATAAGCATACTGATTTGAGTGCTCAGGTATTTGTGCTTCTCCTGGCATATATTGACGTTATTCCACATTTGCTATATAGGATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAAGCAGGTGCTTGATTCAAGACAGCCAAACAAGACGACCAGCAGTTTGAAAGGTCCTACATTGTTTAAAGCAATTTGGTTTGTCTTGTAAAATTATTTTGCCTCTTAGATATGAGAAATGGCTTAAATTGTAGGAAATGAAAAGTCTTCTGATGGA</genome_strand>
        <mrna_strand>AAACATCTTTTATCAGTTCTTGGTCGATAGATGCATCTTTTTGATTAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCACAGTGAGGGTCCTAACTTGGTCATAATTGCAGGTAGCGCGATATTAAGTACATTATCTGTGCGCTTATGGTACAAGCTGAAACAGGTGCTTGATTCAAGACAGCCAATCGAGACGACCAGCAGTTCGAAAG.................................................................................GAAATGAAAAGTCTTCTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709462" ref_strand="+" ref_description="SGN-E709462 [FA52AE03]">
      <seq>cgctttattttacccaagcgttacttgtaatacgaaagaaacaaatccctacaccacaaacatcttttatcacttcttggtcgatagatgcatcttcttgattaatcagaatacattatttcctgtgggatcttgctgtcattgttctgttactgtaatcacactcatgaacgtgtggcatcagcacttgacgtgaaggattactttcatgatctgcagcctctccatctactacttcagtgactatagaaatgaagccaagaaccaacggggtgtcaaggtcccacaagtccaatggcgttcacagtgagggtcctaactgggccataattgcaggtagcgcgttattacgtacattatctgtacgcttaggctacaagctgaacccacgtgcttgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="62831" stop="58734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62532" g_stop="62424" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62423" i_stop="59982" i_length="2442">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59981" g_stop="59893" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="198" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59892" i_stop="59236" i_length="657">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.550" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59235" g_stop="59034" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="401" r_length="203" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E709462" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62532" e_stop="62424"/>
          <exon e_start="59981" e_stop="59893"/>
          <exon e_start="59235" e_stop="59034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTACTTTACCCAAGCGTTACTTGTAATACGAAAGAAACAAAACCCTACACCAGAAACATCTTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAGGTACTTTTTTGATGTACCCTTTTCGTTTTCTTGAATTTTAATGATGGGAATTTCATCTTGTGTTGGTTATGGTATCTGAGCTGTGTAGAAATTTGTTTGGGTGTTTGAATTTCATGTTTGCATTAGCTATGGTCTCTGAATTGTGCAGAAATTAGTTCTGCGTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGTATAGTCCAAGGATTGGGGAGGTTTTTTTCTTTTTGATATATATATAGCCTTTTGTGTCTTTGAATTTCATTTTGCATTGGCTATGGTCTCAGAAGTCCAAGGATTGGGGAGCTTAGCTTTGTTTTTTATAAATAAATTTTCGGGTCTTTGAATTTCATTTTGCATTGGGTATAGTCTCTGAACTGTGCAGAAATTAGTTGTGTGTGTGTGTTTGGTGGCATTTGGTTGTCAAGATTAGAACAAGGATTGAGGAGCTTTTTTTTTTTATATATATATATAACCTTTTCGGGAATTTTTTGTGTGGGTAGTTTCATGTAACATTTGTTATGACCTGGTTAAGTATATGAAAATAAATGGTGTTTTTGTGTGTACTTGTGTTCTGTTTTTGTGATTGAATCTGTGGGTTTATGTTTCAGTTTTGTTTTCGTGAATTAGAGGTTTTATAGGTGCTCTTTTTTGTTGTATGGTAAGTCGGAGATAGCTAGAGTAGGTGGGTGATTGAATGTGATGTTGAAGGCACCTGTGTCTCAATGAGCCATTTGATATCCTAATGACCAACGAGGTGAACAATCTTTTAAATAGAGGAAGTTCAAAAGAAAGAGATGGACGACATATCTCAATTTCAATTTGTTAGACTAGGCAGCACATGTTTGTCATGGGATTGCAGATGTCGTACTGTGTGTCTTATATATTTGAGTTTGACTTTCTTTTTATTTAAAAGGTATAGTGTATTTCATTAGTAGCAATCAAGGAAGCAATCTATGTGAAGATAGTGCTTATGTAATGTGTGTTTAATGTGTTGCTTGTTAAAACTTCTGAATGCCACACTATCAGTAAGTATTTAACTTTCTCCTCCTTAGGCTAGAAGCAACTTCTAAGCTATGTTTTCCTTAGCAACTTTTAATTCTCATGTAACGACTTTTCGAGATTGCTTGTTCTGGTTTTATATGATCTAGTACAATCTATCTTGTGATGGAAGACTATTAAATAGATAATTGCATAATTGGGTTAGGTTAGTCATCAACTTCGAAAGTAAATGACTCCAATCTTATTGTCCGCTCATGCAAAAAGCTAGACTTTCTTGTCACTGTTTTCTTGCCTTTTCGTCATCTGAAGTCTAAACTCCAGGGAACTTTTATATGTTTCCAATTTCCTTATATCATTGTCACTCCGAATCTGCTAGTCTGCTAGTCTTCTAGTCTTCATGTGGATGGCTCTTATAGGCTTACTGCTTTGGTCTTATACGTGGAAAGCCTGACTCAGTAATCCTGTTAGCCATTTCAACTTCAGGTCTTCTTCCCTATATTGTCTCTGTCGTGTGTGTGTACTGTGTGACTTATATACTGCTGGTGCTATCAAGGTTCGAGTTTTACTCCGCGTTAAAGAATAATATATTTAGTTCTGGGCGCCATTTTGATTGTCGTAATCTGAATTAGCCATTTTAAGTAGAGGATCCAAGTTTGACACTATTAATTATGCTTTATTAGGTGCAATATTGTCATCGAAACTAGGACTATTCTGTTTTGTGGTTCAGGGGGAAGGAATATACCGTCGAATTTTAGGCCTTCTCTGATCGTTGTAAACCAATAATTTTTCTCTTTCCTTCAGATTTTCCTTGGATGAATAATTTCCTTTTTTTTTTCTCAAGCAACTTTCTCGTTAATTAGCTGACTATCCTGCCTTAGAGAATTATCTTCATGAACTGAGATTCCTTCCCCGTGTTACTTCTTCCTTCAAAATATTCAATTATCAATGGATATCTTAATTCACTGCGAAGAGGTTGGAAATGACCTTACAGCTTCCTCTTCTGCAACACATCAACCTTCTCCGTAGCTGTTATTTTTTGGATTCTTTGCTTTACCCTCATAAAGGTATTCGCAGCTGCATAGTTTATAGAGGAAGAACGAAACTGGTAAGGCCTCGACTGAGAGTAGCAGATGCAGTTACTGGTTTTAAGTTGTCACCATTTGTTTGAGTGACCTTGTGAAATGTGAACTATTGATTGATGCTATAAACTAATATCAATGATCCAAGTGAATGTAACTAATATCCTGAATGAGCAGTGTATTCCGAACATACAGCTTATTTAAATGAGCAAGCATGCAATAGGTTGCCGTAAATGCAATGCCAGCAGATCTGTCTACATGATCTTTTTTCTATTTGTACTTTAATTAATTATTTCTTCCCTTATTATACTGTCCTTATGGGTTATCGGTGCTGTACTTCCATTGCTTTTTCTTTCAGAATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAGGTATCCATGCTATCAGAATTGTATGATTGCAGTTAGTTTTCCTTCTGTGAACTAGGAATGTGTTGCTTGTTCTACACTTTGGTACTTATTCTTATGGGAATTTTGTTGCTTGTGCTACACTCTGGTACTTATTCTTCTGGTATCTTTTAGGAAAAAAGGGAAATAAAGTACAGATGTGAAACACACTATCAAGGATATGGAAACAAATTAATTATACATGTCCACCTATAGGTATTATAGAAAACTCCAGATCCTCCTTCAAATAGCTTACTTTACTTTTTGAGAACTTCAATAGCTTACTCTTTATTCCAGGAAAAAAAACTTCATTTCTCCCCTTCAGTCAAAAGCTCCAAATATTTTTGCCATTACAGATCCCACTTTTCATATATAAAGTATTGGCAATTTTATAAATAAAATGACTCAGAAAATCTACTCACGTGGAGCTAAACAGATACCATACTATATGTGGACAGCTTGACCTTGCATTTTCTGAGTCTTTTTCACTATCAAATGCCTGTTATGGCCTTGTTTGGCTGCAAAGTTTATTGTAGTTATAATGTTATATTTTTCAACAGCCTATAAGCATACTGATTTGAGTGCTCAGGTATTTGTGCTTCTCCTGGCATATATTGACGTTATTCCACATTTGCTATATAGGATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAA-GCAGGTGCTTGATTC</genome_strand>
        <mrna_strand>CGCTTTATTTTACCCAAGCGTTACTTGTAATACGAAAGAAACAAATCCCTACACCACAAACATCTTTTATCACTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCACACTCATGAACGTGTGGCATCAGCACTTGACGTGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCACAAGTCCAATGGCGTTCACAGTGAGGGTCCTAACTGGGCCATAATTGCAGGTAGCGCGTTATTACGTACATTATCTGTACGCTTAGGCTACAAGCTGAACCCACGTGCTTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267214" ref_strand="-" ref_description="SGN-E267214 [cLEI-4-M20]">
      <seq>cacatgaattagtacttaacactactaataattacacaaataatgatttggtattaatgaagaaactcatcaaagattgtgctgataaatatgcattagctactaatgcacttcaagattcacttcaagatttgaataatgaagtttatgactatgcttacatgcatgttatggcggctgcggattatcctaacgtttgtcataatggatttaagaggaatccaagattggattatccaactcaacttgctattagggaagatggatttaaacatatttgtgatgtggttttaggtattcttgatgctcttggttggtgaaaaaaaataatcccctttttttttttttatgttatatgatatgtaaactttttctattattatatatgtgtttagtttgtctttatctatgtgtagatttaaagaaatgaggatttgtatgttgcctttaattgttcactctttttatgtattgagagtttacctttttatgcaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="66311" stop="65217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66011" g_stop="65516" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="512"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E267214" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267214" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66011" e_stop="65516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATGAATTAGTACTTAACACTACTAATAATTACACAAATAATGATTTGGTATTAATGAAGAAACTCATCAAAGATTGTGCTGATAAATATGCATTAGCTACTAATGCACTTCAAGATTCACTTCAAGATTTGAATAATGAAGTTTATGACTATGCTTACATGCATGTTATGGCGGCTGCGGATTATCCTAACGTTTGTCATAATGGATTTAAGAGGAATCCAAGATTGGATTATCCAACTCAACTTGCTATTAGGGAAGATGGATTTAAACATATTTGTGATGTGGTTTTAGGTATTCTTGATGCTCTTGGTTGGTGAAAAAAAATAATCCCCTTTTTTTTTTTTTATGTTATATGATATGTAAACTTTTTCTATTATTATATATGTGTTTAGTTTGTCTTTATCTATGTGTAGATTTAAAGAAATGAGGATTTGTATGTTGCCTTTAATTGTTCACTCTTTTTATGTATTGAGAGTTTACCTTTTTATGCAAG</genome_strand>
        <mrna_strand>CACATGAATTAGTACTTAACACTACTAATAATTACACAAATAATGATTTGGTATTAATGAAGAAACTCATCAAAGATTGTGCTGATAAATATGCATTAGCTACTAATGCACTTCAAGATTCACTTCAAGATTTGAATAATGAAGTTTATGACTATGCTTACATGCATGTTATGGCGGCTGCGGATTATCCTAACGTTTGTCATAATGGATTTAAGAGGAATCCAAGATTGGATTATCCAACTCAACTTGCTATTAGGGAAGATGGATTTAAACATATTTGTGATGTGGTTTTAGGTATTCTTGATGCTCTTGGTTGGTGAAAAAAAATAATCCCCTTTTTTTTTTTTTATGTTATATGATATGTAAACTTTTTCTATTATTATATATGTGTTTAGTTTGTCTTTATCTATGTGTAGATTTAAAGAAATGAGGATTTGTATGTTGCCTTTAATTGTTCACTCTTTTTATGTATTGAGAGTTTACCTTTTTATGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279268" ref_strand="+" ref_description="SGN-E279268 [cLEL-4-I14](-)">
      <seq>agcatagtcataaactttcaatattcaaatcttgaagtgaatcttgaagtgcattagtagctaatgcatatttatcagcacaatctttgatgagtttcttcattaataccaaatcattatttgtgtaattattagtagtgttaagtactaattcatgtgatgaaagaaaattgtttgtggctgtggcattgaccattccaattttgaccatgatagttgctaagccttttgtgtctgctttgaggcttgtggaatctgatttgagagatgatacacaaagatcatagtattttgtgtttttacatgttttttgaatcaaatcaattgatgatgaggtggtggaaattgttggtaattcatgaagtgaaatcaagaaaacaaggatcaataagaagtggaaattacaagacatattgactttgcttttcaaatatatatattttttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="65554" stop="66603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65854" g_stop="66303" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E279268" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65854" e_stop="66303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATAGTCATAAAC-TTCATTATTCAAATCTTGAAGTGAATCTTGAAGTGCATTAGTAGCTAATGCATATTTATCAGCACAATCTTTGATGAGTTTCTTCATTAATACCAAATCATTATTTGTGTAATTATTAGTAGTGTTAAGTACTAATTCATGTGATGAAAGAAAATTGTTTGTGGCTGTGGCATTGACCATTCCAATTTTGACCATGATAGTTGCTAAGCCTTTTGTGTCTGCTTTGAGGCTTGTGGAATCTGATTTGAGAGATGATACACAAAGATCATAGTATTTTGTGTTTTTACATGTTTTTTGAATCAAATCAATTGATGATGAGGTGGTGGAAATTGTTGGTAATTCATGAAGTGAAATCAAGAAAACAAGAATCAATAAGAAGTGGAAATTACAAGACATATTGACTTTGCTTTTCAAATATATATATTTTTT-TCCTTC</genome_strand>
        <mrna_strand>AGCATAGTCATAAACTTTCAATATTCAAATCTTGAAGTGAATCTTGAAGTGCATTAGTAGCTAATGCATATTTATCAGCACAATCTTTGATGAGTTTCTTCATTAATACCAAATCATTATTTGTGTAATTATTAGTAGTGTTAAGTACTAATTCATGTGATGAAAGAAAATTGTTTGTGGCTGTGGCATTGACCATTCCAATTTTGACCATGATAGTTGCTAAGCCTTTTGTGTCTGCTTTGAGGCTTGTGGAATCTGATTTGAGAGATGATACACAAAGATCATAGTATTTTGTGTTTTTACATGTTTTTTGAATCAAATCAATTGATGATGAGGTGGTGGAAATTGTTGGTAATTCATGAAGTGAAATCAAGAAAACAAGGATCAATAAGAAGTGGAAATTACAAGACATATTGACTTTGCTTTTCAAATATATATATTTTTTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397872" ref_strand="+" ref_description="SGN-E397872 [TUS-35-B12]">
      <seq>ctgaggttgtagagattgtattggacgataacgggctagtagatatggaagcattgagggatcagcttgagttgtataagtctacgaatagaccattgttgggttcgttctcagcttgtagaaatgttactgggacttattctgatacaagagccatcgctcgtttacttcataaaaatggagcttttgcttgctttgatttcgcagcaagtggtccatatgcgaaaatagagatgagatcaggagagatcgatggatatgatgctgtttttattagtcctcataaatttcttggaggtccaggcacacctggaattcttgtaatgaacaaagcactctatcgattgaggacttcacctccatctacttgtggaggtggtactgttgattttgttaacccgtacaatgaaaaggacacactttatgtggagaatattgaagaaagggaagacgctggtacaccgcccatcattcaaaaagtgagaacagcacttgcattttgggtgaaagagttcataagtcataaagtaattgaaagaatgggaacacacttacattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="73160" stop="74491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73460" g_stop="73670" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73671" i_stop="73755" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73756" g_stop="73957" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="413" r_length="202" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73958" i_stop="74044" i_length="87">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74045" g_stop="74191" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="561" r_length="148" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E397872" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73460" e_stop="73670"/>
          <exon e_start="73756" e_stop="73957"/>
          <exon e_start="74045" e_stop="74191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAGGTATGTTAATTGAGTTTGACTTTTATACACTGACAGTACTAAGTATGTCACGGAAATATGACTAATTTATGGTGTTATGTTGCAGTGGTCCATACGCGAAAATAGAGATGAGATCAGGAGAGATGGATGGATATGATGCTGTTTTTATTAGTCCTCATAAGTTTCTTGGAGGTCCAGGCACACCTGGAGTTCTTGTAATGAACAAAGCACTCTATAGATTGAGGACTTCGCCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCCTACAATGAAAAGGTATGTATGTACTAAGTTACGCGGACTCTTCATCTTCTGCTTAGCTCTCAAGATAATTCTGAACTTGATATATAATAAAATAAACAGGACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAAT-GGAACACACTTACATTGAA</genome_strand>
        <mrna_strand>CTGAGGTTGTAGAGATTGTATTGGACGATAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGAAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAG.....................................................................................TGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAG.......................................................................................GACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCCATCATTCAAAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGGAACACACTTACATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395496" ref_strand="+" ref_description="SGN-E395496 [TUS-16-B12]">
      <seq>ctgaggttgtagagattggattggacgaaaacgggctagtagatatggaagcattgagggatcagcttgagttgtataagtctacgaatagaccattgttgggttcgttctcagcttgtagtaatgttactgggacttattctgatacaagagccatcgctcgtttacttcataaaaatggagcttttgcttgctttgatttcgcagcaagtggtccatatgcgaaaatagagatgagatcaggagagatcgatggatatgatgctgtttttattagtcctcataaatttcttggaggtccaggcacacctggaattcttgtaatgaacaaagcactctatcgattgaggacttcacctccatctacttgtggaggtggtactgttgattttgttaacccgtacaatgaaaaggacacactttatgtggagaatattgaagaaagggaatacgctggtacaccgccaatcattcataaagtgagaacagcacttgcattttgggtgaaagagttcataactcataaattaattgaaagaatggaacacacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="73160" stop="74485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73460" g_stop="73670" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73671" i_stop="73755" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73756" g_stop="73957" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="413" r_length="202" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73958" i_stop="74044" i_length="87">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74045" g_stop="74185" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="554" r_length="141" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E395496" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73460" e_stop="73670"/>
          <exon e_start="73756" e_stop="73957"/>
          <exon e_start="74045" e_stop="74185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAGGTATGTTAATTGAGTTTGACTTTTATACACTGACAGTACTAAGTATGTCACGGAAATATGACTAATTTATGGTGTTATGTTGCAGTGGTCCATACGCGAAAATAGAGATGAGATCAGGAGAGATGGATGGATATGATGCTGTTTTTATTAGTCCTCATAAGTTTCTTGGAGGTCCAGGCACACCTGGAGTTCTTGTAATGAACAAAGCACTCTATAGATTGAGGACTTCGCCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCCTACAATGAAAAGGTATGTATGTACTAAGTTACGCGGACTCTTCATCTTCTGCTTAGCTCTCAAGATAATTCTGAACTTGATATATAATAAAATAAACAGGACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTAC</genome_strand>
        <mrna_strand>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAG.....................................................................................TGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAG.......................................................................................GACACACTTTATGTGGAGAATATTGAAGAAAGGGAATACGCTGGTACACCGCCAATCATTCATAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAACTCATAAATTAATTGAAAGAATGGAACACACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205162" ref_strand="+" ref_description="SGN-E205162 [cLEC-16-F11]">
      <seq>tgaggttgtagagattggattggacgaaaacgggctagtagatatggaagcattgagggatcagcttgagttgtataagtctacgaatagaccattgttgggttcgttctcagcttgtagtaatgttactgggacttattctgatacaagagccatcgctcgtttacttcataaaaatggagcttttgcttgctttgatttcgcagcaagtggtccatatgcgaaaatagagatgagatcaggagagatcgatggatatgatgctgtttttattagtcctcataaatttcttggaggtccaggcacacctggaattcttgtaatgaacaaagcactctatcgattgaggacttcacctccatctacttgtggaggtggtactgttgattttgttaacccgtacaatgaaaaggacacactttatgtggagaatattgaagaaagggaagacgctggtacaccgccaatcattcagaaagtgagaacagcacttgcattttgggtgaaagagttcataagtcataaagtaattgaaagaatggaacacacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="73161" stop="74485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73461" g_stop="73670" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73671" i_stop="73755" i_length="85">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73756" g_stop="73957" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="412" r_length="202" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73958" i_stop="74044" i_length="87">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74045" g_stop="74185" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="553" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E205162" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73461" e_stop="73670"/>
          <exon e_start="73756" e_stop="73957"/>
          <exon e_start="74045" e_stop="74185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAGGTATGTTAATTGAGTTTGACTTTTATACACTGACAGTACTAAGTATGTCACGGAAATATGACTAATTTATGGTGTTATGTTGCAGTGGTCCATACGCGAAAATAGAGATGAGATCAGGAGAGATGGATGGATATGATGCTGTTTTTATTAGTCCTCATAAGTTTCTTGGAGGTCCAGGCACACCTGGAGTTCTTGTAATGAACAAAGCACTCTATAGATTGAGGACTTCGCCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCCTACAATGAAAAGGTATGTATGTACTAAGTTACGCGGACTCTTCATCTTCTGCTTAGCTCTCAAGATAATTCTGAACTTGATATATAATAAAATAAACAGGACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTAC</genome_strand>
        <mrna_strand>TGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAG.....................................................................................TGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAG.......................................................................................GACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398459" ref_strand="+" ref_description="SGN-E398459 [TUS-16-B12](-)">
      <seq>attgaaatgggctatactggagttaagccgggatggacaaggataagctttccctactacatgtcgaaagaagaatttgagttcattctagcagcattagaattcatatccatttatggacaaaggttccttcctttatacaatttcaattggaagagtggtgcttggactttcaaaaagaaagctttgaaagagacgcttacgagagggatggatcacaattgcaacttttgtggctcaccaatgatgaaggagttgaacttaggtggtgccaatacttgccatgataacacaaaagaaggatcatgcactaacagtaacaaagaaggcattatttataagtacgtaaagtatcttgagacagccaagcgcgtagctagcctccttcctaaattcccacagcagagaccaatacctgaagaactagacactaatcttgtgtcctttagagcctgataaaaatatgtatatgaaaataaactttgtccaatgtcttgttgggcaaattcgatcgtttgatatgtaataataacttcaaagtatatgtattcccttcgttttgtttttacttgttcagtatgtattttgtattttctttaagaaaaacataaagtattttttgatttctcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="76122" stop="74889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75901" g_stop="75893" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75892" i_stop="75812" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75811" g_stop="75179" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="642" r_length="633" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E398459" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75901" e_stop="75893"/>
          <exon e_start="75811" e_stop="75179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAATGGTGAGTTTCGATAAATAAAGGATTTTTACTTATGTACTATATAATTATCTTTTTAACGTTAACTTTTCACTTGATATATAGGGCTATACTGGAGTTAAGCCGGGATGGACAAGGATAAGCTTTCCCTACTACATGTCGAAAGAAGAATTTGAGTTCATTCTAGCAGCATTAGAATTCATATCCATTTATGGACAAAGGTTCCTTCCTTTATACAATTTCAATTGGAAGAGTGGTGCTTGGACTTTCAAAAAGAAAGCTTTGAAAGAGACGCTTACGAGAGGGATGGATCACAATTGCAACTTTTGTGGCTCACCAATGATGAAGGAGTTGAACTTAGGTGGTGCCAATACTTGCCATGATAACACAAAAGAAGGATCATGCACTAACAGTAACAAAGAAGGCATTATTTATAAGTACGTAAAGTATCTTGAGACAGCCAAGCGCGTAGCTAGCCTCCTTCCTAAATTCCCACAGCAGAGACCAATACCTGAAGAACTAGACACTAATCTTGTGTCCTTTAGAGCCTGATAAAAATATGTATATGAAAATAAACTTTGTCCAATGTCTTGTTGGGCAAATTCGATCGTTTGATATGTAATAATAACTTCAAAGTCTATGTATTCCCTTCGTTTTGTTTTTACTTGTTCAGTATGTATTTTGTATTTTCTTTAAGAAAAACATAAAGTATTTTTTGATTTCTCATTTGGTGTTGAT</genome_strand>
        <mrna_strand>ATTGAAATG.................................................................................GGCTATACTGGAGTTAAGCCGGGATGGACAAGGATAAGCTTTCCCTACTACATGTCGAAAGAAGAATTTGAGTTCATTCTAGCAGCATTAGAATTCATATCCATTTATGGACAAAGGTTCCTTCCTTTATACAATTTCAATTGGAAGAGTGGTGCTTGGACTTTCAAAAAGAAAGCTTTGAAAGAGACGCTTACGAGAGGGATGGATCACAATTGCAACTTTTGTGGCTCACCAATGATGAAGGAGTTGAACTTAGGTGGTGCCAATACTTGCCATGATAACACAAAAGAAGGATCATGCACTAACAGTAACAAAGAAGGCATTATTTATAAGTACGTAAAGTATCTTGAGACAGCCAAGCGCGTAGCTAGCCTCCTTCCTAAATTCCCACAGCAGAGACCAATACCTGAAGAACTAGACACTAATCTTGTGTCCTTTAGAGCCTGATAAAAATATGTATATGAAAATAAACTTTGTCCAATGTCTTGTTGGGCAAATTCGATCGTTTGATATGTAATAATAACTTCAAAGTATATGTATTCCCTTCGTTTTGTTTTTACTTGTTCAGTATGTATTTTGTATTTTCTTTAAGAAAAACATAAAGTATTTTTTGATTTCTCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392344" ref_strand="+" ref_description="SGN-E392344 [TUS-35-B12](-)">
      <seq>ccgggatggacaaggataagctttccctactacatgtcgaaagaagaatttgagttcattctagcagcattagaaattcatatccatttatggacaaaggttccttcctttatacaatttcaattggaagagtggtgcttggactttcaaaaagaaagctttgaaagagacgcttacgagagggatggatcacaattgcaacttttgtggctcaccaatgatgaaggagttgaacttaggtggtgccaatacttgccatgataacacaaaagaaggatcatgcactaacagtaacaaagaaggcattatttataagtacgtaaagtatcttgagacagccaagcgcgtagctagcctccttcctaaattcccacagcagagaccaatacctgaagaactagacactaatcttgtgtcctttagagcctgataaaaatatgtatatgaaaataaactttgtccaatgtcttgttgggcaaattcgatcgtttgatatgtaataataacttcaaagtatatgtattccctctcgttttgtttttacttgttcagataagtattttgtattttctttacgaaaaacataagagtattttatgatttctcattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="76093" stop="74889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75793" g_stop="75192" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="625"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E392344" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75793" e_stop="75192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGATGGACAAGGATAAGCTTTCCCTACTACATGTCGAAAGAAGAATTTGAGTTCATTCTAGCAGCATTAG-AATTCATATCCATTTATGGACAAAGGTTCCTTCCTTTATACAATTTCAATTGGAAGAGTGGTGCTTGGACTTTCAAAAAGAAAGCTTTGAAAGAGACGCTTACGAGAGGGATGGATCACAATTGCAACTTTTGTGGCTCACCAATGATGAAGGAGTTGAACTTAGGTGGTGCCAATACTTGCCATGATAACACAAAAGAAGGATCATGCACTAACAGTAACAAAGAAGGCATTATTTATAAGTACGTAAAGTATCTTGAGACAGCCAAGCGCGTAGCTAGCCTCCTTCCTAAATTCCCACAGCAGAGACCAATACCTGAAGAACTAGACACTAATCTTGTGTCCTTTAGAGCCTGATAAAAATATGTATATGAAAATAAACTTTGTCCAATGTCTTGTTGGGCAAATTCGATCGTTTGATATGTAATAATAACTTCAAAGTCTATGTATTCCCT-TCGTTTTGTTTTTACTTGTTCAG-TATGTATTTTGTATTTTCTTTAAGAAAAACATAA-AGTATTTTTTGATTTCTC</genome_strand>
        <mrna_strand>CCGGGATGGACAAGGATAAGCTTTCCCTACTACATGTCGAAAGAAGAATTTGAGTTCATTCTAGCAGCATTAGAAATTCATATCCATTTATGGACAAAGGTTCCTTCCTTTATACAATTTCAATTGGAAGAGTGGTGCTTGGACTTTCAAAAAGAAAGCTTTGAAAGAGACGCTTACGAGAGGGATGGATCACAATTGCAACTTTTGTGGCTCACCAATGATGAAGGAGTTGAACTTAGGTGGTGCCAATACTTGCCATGATAACACAAAAGAAGGATCATGCACTAACAGTAACAAAGAAGGCATTATTTATAAGTACGTAAAGTATCTTGAGACAGCCAAGCGCGTAGCTAGCCTCCTTCCTAAATTCCCACAGCAGAGACCAATACCTGAAGAACTAGACACTAATCTTGTGTCCTTTAGAGCCTGATAAAAATATGTATATGAAAATAAACTTTGTCCAATGTCTTGTTGGGCAAATTCGATCGTTTGATATGTAATAATAACTTCAAAGTATATGTATTCCCTCTCGTTTTGTTTTTACTTGTTCAGATAAGTATTTTGTATTTTCTTTACGAAAAACATAAGAGTATTTTATGATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236200" ref_strand="+" ref_description="SGN-E236200 [cLED-20-B3]">
      <seq>atagggctatactggagttaagccgggatggacaaggataagctttccctactacatgtcgaaagaagaatttgagttcattctagcagcattagaattcatatccatttatggacaaaggttccttcctttatacaatttcaattggaagagtgatgcttggactttcaaaaagaaagctttgaaagagacgcttacgagagggatggatcacaattgcaacttttgtggctcaccaatgatgaaggagttgaacttaggtggtgccaatacttgccatgataacacaaaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="76115" stop="75220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75815" g_stop="75520" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E236200" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75815" e_stop="75520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGGCTATACTGGAGTTAAGCCGGGATGGACAAGGATAAGCTTTCCCTACTACATGTCGAAAGAAGAATTTGAGTTCATTCTAGCAGCATTAGAATTCATATCCATTTATGGACAAAGGTTCCTTCCTTTATACAATTTCAATTGGAAGAGTGGTGCTTGGACTTTCAAAAAGAAAGCTTTGAAAGAGACGCTTACGAGAGGGATGGATCACAATTGCAACTTTTGTGGCTCACCAATGATGAAGGAGTTGAACTTAGGTGGTGCCAATACTTGCCATGATAACACAAAAGAAG</genome_strand>
        <mrna_strand>ATAGGGCTATACTGGAGTTAAGCCGGGATGGACAAGGATAAGCTTTCCCTACTACATGTCGAAAGAAGAATTTGAGTTCATTCTAGCAGCATTAGAATTCATATCCATTTATGGACAAAGGTTCCTTCCTTTATACAATTTCAATTGGAAGAGTGATGCTTGGACTTTCAAAAAGAAAGCTTTGAAAGAGACGCTTACGAGAGGGATGGATCACAATTGCAACTTTTGTGGCTCACCAATGATGAAGGAGTTGAACTTAGGTGGTGCCAATACTTGCCATGATAACACAAAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397872" ref_strand="+" ref_description="SGN-E397872 [TUS-35-B12]">
      <seq>ctgaggttgtagagattgtattggacgataacgggctagtagatatggaagcattgagggatcagcttgagttgtataagtctacgaatagaccattgttgggttcgttctcagcttgtagaaatgttactgggacttattctgatacaagagccatcgctcgtttacttcataaaaatggagcttttgcttgctttgatttcgcagcaagtggtccatatgcgaaaatagagatgagatcaggagagatcgatggatatgatgctgtttttattagtcctcataaatttcttggaggtccaggcacacctggaattcttgtaatgaacaaagcactctatcgattgaggacttcacctccatctacttgtggaggtggtactgttgattttgttaacccgtacaatgaaaaggacacactttatgtggagaatattgaagaaagggaagacgctggtacaccgcccatcattcaaaaagtgagaacagcacttgcattttgggtgaaagagttcataagtcataaagtaattgaaagaatgggaacacacttacattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="77253" stop="75923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76953" g_stop="76743" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76742" i_stop="76659" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76658" g_stop="76457" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="413" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76456" i_stop="76370" i_length="87">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76369" g_stop="76223" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="561" r_length="148" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E397872" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76953" e_stop="76743"/>
          <exon e_start="76658" e_stop="76457"/>
          <exon e_start="76369" e_stop="76223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAGGTATGTTAATTGAGTTTGACTTTTGTATACTGACATACTAAGTATGTCGCGAAAAGATGACTAATATATGGTGTTATGTTGTAGTGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAGGTATGTATGTACTAAGTTGCGCGGACTCTTCATCTTCTGCTTAGCTCTCATGATAATTCTGAACTTGATATATAATAAAATAAACAGGACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAAT-GGAACACACTTACATTGAA</genome_strand>
        <mrna_strand>CTGAGGTTGTAGAGATTGTATTGGACGATAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGAAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAG....................................................................................TGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAG.......................................................................................GACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCCATCATTCAAAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGGAACACACTTACATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395496" ref_strand="+" ref_description="SGN-E395496 [TUS-16-B12]">
      <seq>ctgaggttgtagagattggattggacgaaaacgggctagtagatatggaagcattgagggatcagcttgagttgtataagtctacgaatagaccattgttgggttcgttctcagcttgtagtaatgttactgggacttattctgatacaagagccatcgctcgtttacttcataaaaatggagcttttgcttgctttgatttcgcagcaagtggtccatatgcgaaaatagagatgagatcaggagagatcgatggatatgatgctgtttttattagtcctcataaatttcttggaggtccaggcacacctggaattcttgtaatgaacaaagcactctatcgattgaggacttcacctccatctacttgtggaggtggtactgttgattttgttaacccgtacaatgaaaaggacacactttatgtggagaatattgaagaaagggaatacgctggtacaccgccaatcattcataaagtgagaacagcacttgcattttgggtgaaagagttcataactcataaattaattgaaagaatggaacacacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="77253" stop="75929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76953" g_stop="76743" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76742" i_stop="76659" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76658" g_stop="76457" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="413" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76456" i_stop="76370" i_length="87">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76369" g_stop="76229" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="554" r_length="141" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E395496" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76953" e_stop="76743"/>
          <exon e_start="76658" e_stop="76457"/>
          <exon e_start="76369" e_stop="76229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAGGTATGTTAATTGAGTTTGACTTTTGTATACTGACATACTAAGTATGTCGCGAAAAGATGACTAATATATGGTGTTATGTTGTAGTGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAGGTATGTATGTACTAAGTTGCGCGGACTCTTCATCTTCTGCTTAGCTCTCATGATAATTCTGAACTTGATATATAATAAAATAAACAGGACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTAC</genome_strand>
        <mrna_strand>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAG....................................................................................TGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAG.......................................................................................GACACACTTTATGTGGAGAATATTGAAGAAAGGGAATACGCTGGTACACCGCCAATCATTCATAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAACTCATAAATTAATTGAAAGAATGGAACACACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205162" ref_strand="+" ref_description="SGN-E205162 [cLEC-16-F11]">
      <seq>tgaggttgtagagattggattggacgaaaacgggctagtagatatggaagcattgagggatcagcttgagttgtataagtctacgaatagaccattgttgggttcgttctcagcttgtagtaatgttactgggacttattctgatacaagagccatcgctcgtttacttcataaaaatggagcttttgcttgctttgatttcgcagcaagtggtccatatgcgaaaatagagatgagatcaggagagatcgatggatatgatgctgtttttattagtcctcataaatttcttggaggtccaggcacacctggaattcttgtaatgaacaaagcactctatcgattgaggacttcacctccatctacttgtggaggtggtactgttgattttgttaacccgtacaatgaaaaggacacactttatgtggagaatattgaagaaagggaagacgctggtacaccgccaatcattcagaaagtgagaacagcacttgcattttgggtgaaagagttcataagtcataaagtaattgaaagaatggaacacacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="77252" stop="75929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76952" g_stop="76743" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76742" i_stop="76659" i_length="84">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76658" g_stop="76457" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="412" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76456" i_stop="76370" i_length="87">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76369" g_stop="76229" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="553" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E205162" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76952" e_stop="76743"/>
          <exon e_start="76658" e_stop="76457"/>
          <exon e_start="76369" e_stop="76229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAGGTATGTTAATTGAGTTTGACTTTTGTATACTGACATACTAAGTATGTCGCGAAAAGATGACTAATATATGGTGTTATGTTGTAGTGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAGGTATGTATGTACTAAGTTGCGCGGACTCTTCATCTTCTGCTTAGCTCTCATGATAATTCTGAACTTGATATATAATAAAATAAACAGGACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTAC</genome_strand>
        <mrna_strand>TGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAG....................................................................................TGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAG.......................................................................................GACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335987" ref_strand="+" ref_description="SGN-E335987 [cTOE-6-J21]">
      <seq>ggaatttgaacaaccaatgtttagagaacaccacaacactaagaaatataaccatagtagttctattagtagtactgattcctctgttgcttcacatgaagatttgagaagtagaattgaatcatttcatgttagggaaaaagctatgtccaaaactgaatctgctgaaaaaaaactttcatggctacgttcacagattattggtgaaaatgtcgatttcgattcgccttttgggaaacgtaagcttacttatgctgatcatactgcctctggaagatcacttcaatatatcgaaaattatatcatgaataacgtccttgctttctatggtaatagtcatactagtgacagtcatgtgggatatcaaacgacgaaaatagtgcatgaagcagcagcttatgtgaagaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="77976" stop="76871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77676" g_stop="77348" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77347" i_stop="77254" i_length="94">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77253" g_stop="77171" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="412" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E335987" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77676" e_stop="77348"/>
          <exon e_start="77253" e_stop="77171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTTGAACAACCAATGTTTAGAGAACACCACAACACTAAGAAATATAACCATAGTAGTTCTATTAGTAGTACTGTTTCCTCTGTTGCTTCACATGAAGATTTGAGAAGTAGAATTGAATCATTTCATGTTAGGGAAAAAGCTATTTCCAAAACTGAATCTGCTGAAAAAAAACTTTCATGGTTACGTTCACAGATTATTGGTGAAAATGTCGATTTCGATTCGCCTTTTGGGAAACGTAGGCTTACTTATGCTGATCATACTGCCTCTGGAAGATCACTTCAATATATCGAAAATTATATCATCAATAACGTCCTTCCTTTCTATGGTATGTTCGTTTACCTTAGTAACTATGTACGTACGATACTCCTTTATCCTTAACCAGAAGGGAAAGATAACAACTATTGTATTATTTTGTACAGGTAATAGTCATACTAGTGACAGTCATGTGGGATATCAAACGACGAAAATAGTGCATGAAGCAGCAGCTTATGTGAAGAAATGC</genome_strand>
        <mrna_strand>GGAATTTGAACAACCAATGTTTAGAGAACACCACAACACTAAGAAATATAACCATAGTAGTTCTATTAGTAGTACTGATTCCTCTGTTGCTTCACATGAAGATTTGAGAAGTAGAATTGAATCATTTCATGTTAGGGAAAAAGCTATGTCCAAAACTGAATCTGCTGAAAAAAAACTTTCATGGCTACGTTCACAGATTATTGGTGAAAATGTCGATTTCGATTCGCCTTTTGGGAAACGTAAGCTTACTTATGCTGATCATACTGCCTCTGGAAGATCACTTCAATATATCGAAAATTATATCATGAATAACGTCCTTGCTTTCTATG..............................................................................................GTAATAGTCATACTAGTGACAGTCATGTGGGATATCAAACGACGAAAATAGTGCATGAAGCAGCAGCTTATGTGAAGAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577849" ref_strand="+" ref_description="SGN-E577849 [LE08AD09]">
      <seq>cgaaaatggaggcttgtagacgatttcttcttcatcatcctcctcagtcacttcacggtcggggccactgttatctgctcccagatcatgggcgaggtattttccgccctttgggtcgctatgggtcgccaattcctcgtcgagcgccgcgtttctgtccaacaacacagcagtctcgatatctatcttcgcctctctcgcctttccttcgtgtatctctaaacgaagcaagttcaaccttttccttaggctttcggtttccatctcaacctccttctttctctttatctgtgacgccagatcttcatccaatgttgtgaccgcagctttgtagatcgccgtggtcgcgtctactttgagtccttcttccttaaccttctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="92943" stop="91958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92643" g_stop="92258" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E577849" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92643" e_stop="92258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTGCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGCCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTACGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</genome_strand>
        <mrna_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCTAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCTTCCTTAACCTTCTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243204" ref_strand="+" ref_description="SGN-E243204 [cLEE-2-O19]">
      <seq>aggctggttctgagttggatctatgtttgatgaagggaagtagaccggaggtcttgcatcagcaatattagtaccaaatccaggtggaggcgcatcctgtctccgttgcatttcaactttcatttcagcaatctgttgcatcagttgcatgatcaattcattctgttccactacagtgggctgagcgaccacaacgtcagtaagacgcccttcgtcattgttgtctcccataactgtttttcctttatctgaatttgatcgagggaaggaatctgtaggacctttcgatctggtgaagtaaggatgatctgccagctttattgacacagatcagtaaaaaggtacctgaaaggtaaaaacaactcaaaggcaaatttgttagtgcatatccagagtacaaaatgcttaatatcgcacataaaaccgataaacacacaagtcgttttgtttgaggatatcttaacccacgaataaggacggatatatattttgaacaaacaggaatttgtttgtttggcgttatcttgggaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="93781" stop="92647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93481" g_stop="92947" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E243204" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93481" e_stop="92947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTGGTTCTGAGTTGGACCTATGTTTGATGAAGGGAAGTAGACGGGAGGTCTTGCATCAGCAGTATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGCATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGT-AAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAACACACAAGTCATTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAAGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</genome_strand>
        <mrna_strand>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGTTGCATGATCAATTCATTCTGTTCCACTACAGTGGGCTGAGCGACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTATCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAAAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCTTAATATCGCACATAAAACCGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGTTATCTTGGGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707410" ref_strand="+" ref_description="SGN-E707410 [FA32DF11]">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="99274" stop="100613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99573" g_stop="100313" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E707410" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99573" e_stop="100313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGATAAGGGTGCCACCTCACGAACTCAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAATGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCTCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTGC-GTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355122" ref_strand="+" ref_description="SGN-E355122 [cTOS-18-H18]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="99337" stop="100667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99632" g_stop="100367" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E355122" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99632" e_stop="100367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAATGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCTCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACTG</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350936" ref_strand="+" ref_description="SGN-E350936 [cTOS-7-D2]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcancaaagagtaagagccagaattttgaaagtggccagttggttcttaagcgtatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="99337" stop="100627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99632" g_stop="100327" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E350936" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99632" e_stop="100327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAATGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCTCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTC</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCANCAAAGAGTAAGAGCCAG-AATTTTGAAAGTGGCCAGTTGGTTCTTAAGCGTATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353644" ref_strand="+" ref_description="SGN-E353644 [cTOS-10-I24]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="99337" stop="100626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99632" g_stop="100326" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E353644" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99632" e_stop="100326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAATGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCTCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTT</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365697" ref_strand="+" ref_description="SGN-E365697 [cLPT-8-M7]">
      <seq>gaggctgaattcgatgagaatgaagataattctgtttgggaagcttcaaagagccatggtttacatccatgcattaagccaactgcaaaatacaaagctgctctaggatggaatcgctacttgactgtaaaaagtaatggtggattaaatcaaatgaggacgggtatagctgacatggtggcagtggcacatgtgatgaatgcaactttggtaattcctcaattggacaagcgttcattctggcaagattcaagatatatttgatgagaaccatttcattaaagcattacgaggagacctcatgattattaaagagcttcctaaagaaatagaatctttacctcgagctaggaagcacttcacgtcatggtcaggagtgggttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="125496" stop="121069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125191" g_stop="125113" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="97" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125112" i_stop="124713" i_length="400">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124712" g_stop="124645" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="165" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124644" i_stop="122071" i_length="2574">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122070" g_stop="121982" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="254" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121981" i_stop="121503" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121502" g_stop="121369" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="388" r_length="134" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E365697" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125191" e_stop="125113"/>
          <exon e_start="124712" e_stop="124645"/>
          <exon e_start="122070" e_stop="121982"/>
          <exon e_start="121502" e_stop="121369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAAGATAATTCTGTTTGGGAAGCTTCAAAGAGCCATGGTTTACATCCATGCATTAAGCCAACTGCAAAATACAAAGGTTAAACTCTACTACTACAGCTTGTGCTTCTTTTGCTACCTGCTAGTTAATATGGAAAAAAGGTATCTCCATTGCCTTTTGGGAGCACTAATTTTTTCTGAATTTTGTAAAAGGGAAATACTTGATTATCTCAAGATCTCATTTTTCAGATTCTTTTTATAGGGTGTGGGGACAATTTTCTGTATGTCGTTTCTTATGTGTTCTATCAGTTCATGCCTGTGTTTGTTTAAAGCTGAAACAGCGTATTTCAGTCATAAAAATAGATAAAAGATCATGCCTTTGCTGTTTTCTATCAATTGCAATCTCTTAAACATGTACCAACTCATGCACAATATGAACCTTTTGTATGCTGTAACTTTTAAGCAGATAGTCTTATGCAGAATTTATACTTCTTGTCCAGCTGCTCTAGGGTGGAAACGCTACTTGACTGTAAAAAGTAATGGTGGATTAAATCAAATGAGGACGGGTGTAAGTTTGATCTTTCCTTAGATTTCTAATTTCCATTTTCTGTGTGTATGTTACATAATTGTTCTTGTTTTTAATCCACAATAATTCAAAGAAATTGCTTTCATGCTACGGTTAGACGAGCTAAAAGTGTGGATTAGCTTAAACATGTAAATGCTAGTGGGCATGTAGTAACTTGTATGCACTTCTACTTGTATATTCCTAGGGTATCATTCAACAAGTTAACTTGATTGAAGCTGAGCCATTTAAAACCTTCAGCTTAGAAATAGATATTAAAGTAAGACAAATTAAAGTGGGCCTTTAAGTTTATACGCTGTTTGGAATGAAGTCTGTAAAAATAGCATTCATAGATAAAGGGGGTGGGGGGGAAGTTAACAAAAAAAGCAGTCTCATACGAAGTTGTGTTGCTGCAAGGAAATAGCTAAATGATGCACTAGCAATTTGATGATTCTTTAAATTTGAGACATATTTGGTATACAGAAAAACACTTTTCTCATTTATACTTTTTATCACATAAAATAATCATAACATGTCATATGAATGGGAATTAGATTTCTATAAGACCAGAAAACGTTGTTCCCAGCAAGAAGACGATGAATTATGATTGTAAGTTGGCATAGTTTTGGAAAGAAATGGCAGATCTGGACATGTCTATTGGTTAAGGTTGACCTCGCCCAATTTTATTAGCTTGATCTCCTTTTCTCTTCATGGAAAATTAAATAAACGTCCAAGTTTTTGTGGCATCACAGAAACTTACATGTTAATTTTGTAAGTTTACTTCAAATCCTCAAAACCCTAACTTGGCAACAAAAAGAAAGAATGGTTATTTTGAAAACAGAGTTGCCACTTAATTTTGCAAGGCAATTATGAAAACCTTTAATTTTTAAAAAAAGATTCTAACAGAAAAATCTTTTCAAAATTTCAAAGATAGGGTTCCTATTAACATTTCGAGAAGGTTCTAAGCCCTTGAAATGTCTGCTTAACACATGGTTATCTGTTGATTTAACTAAACAATTATTTGACTAACTTAATTGATTGAAGAATTTCTTAAATTTTTTAATATGTGAAAGGAAAAAGTATTTTTGGCATTTTGTTGAAAAGAAAAGCTCTTTTGGACTGTTTGAAAAGAAAAACTCTTTTGAAACTCTCAAGGCAATCTAAGTTAATTTAAAACTTCAGTATTTAAGACAAATAAAATTACAAGGAACCAAAAATAAAACATAGCAACTCAAGGGGGATTCATCCAAGTTAGAATGAATGTTAGTATACAATACAATGAAATCAAGAAATAAGAGAAAATTTAAATTGGGCTCCTGAGACCCAATCTTTGCTACTAACAGATGATCTTCAGGCTCTATGCAGTATTACTGCTCCTACCCCATTTTATCTGCTCCTGCTGATGTAATTTCGGCCTCTGGACAGATTTATCTTCCATTTTCACACTGTTTGAGGCTGACTCAAAAGACATGTATTGAGCTTTAAGCAAATGCCAAAAATGATTGACTTAACTTAATGTCATACAATGCTTTGAAATTATGATAATAAAAATTTGAATAAGAACTCCATTTTTTGACCATTTTTGAGTTTTAACTCTATATCCAGATAATGAAATCATGCACCATACATATTTGATTCATATGTGTCAAATTAGAAACCTGGAACTTATCATACGTGTAAATCAAATTGAGTATTATGCTAACTAGAAGAATTAGTTTCCTCAAACCAAAGCTATCAGTCATACCAAATTCTATAGGTCACTAAGTTAACTTCAAATTCTTTCTCAAAATAAAATAAAATAGTTAACTTTAAATTGAAACATATCATAAAAATAAGATTTCATCTACTCTTAATCTACGAATTGAACATATCATAGAATAAGATATTCATCTACTCTTAATCCACTTTTAAAGTTACTAGATCAAATAATATTTTTACTTAGTAAGGAATTGACATGTTGCCAGGAAAATCTAAGACTCGATTTTTCAAAGATAGGCAAAATATCAGACAGGAAATAAACGCATAAGTGTCACTTTATTTTAAAGATGAGCTGATTTACGGGTGGAAAAAGGATGAGACGGACAGGAATTTGCCCGTGGATTTGGGATTTGCACATCCGAGGGTTGACTTGCGTTGAGCCTTGGTCTTCTTGTATCTTCAGCCGTTGCATTCCCAATATACGTTGATGTAGACATTATGAAATTCCCAATTTCTTGTATAATGGGTGGAAATAAAGTTTTCAAAGATGGGCGCTGAACCTTGGATAGGATGCCACGTATCTCGGCGTTGTTCGAACATACAAGGACTGATCTTTGATTTTCATTTATTCACGTTCACTCCAAGGGACAAAGTTCCATAAGTTTTGCTAATTTTGTTTTACATTGGTAAGATGATTATGCCATGACTTCTGAAGTGCTGACTCATGAATCATTATGTTGTTGGATGTAGTCCCGTCTCATTATTGAAATGTCATTCTGGTCATGCCCTTTCTTTAAGCAAATATATCCACATATTTATAAGTTAATGAAGTACTTTCCCCTTCAGTCTTAATTTTTTCATTTTGCTTCTTTTTGCTTACAGATAGCTGACATGGTGGCAGTGGCACATGTGATGAATGCAACTTTGGTAATTCCTCAATTGGACAAGCGTTCATTCTGGCAAGATTCAAGGTCATATTTTTTTCTGTACTGTATATCTTACAACTTCACATGGCTTGTCATTCTTTTAGAAATGTGTTTATATATGTAATGTATTGCTTAGATGGTGGTCTCCTTGTATGGACTTGTGCAGTCCCCTCCTCATGGGCTAGATTTTGAGGTTGAGTTAGGTCCAAGATTCATTTATTTACATGGTACCATAGCAGGACCCATCATACCCGATGTTGAGCCCCAAAATTAAATTGCCCATGCTCCAGCTGTCTGGTCTCTTTTTATGGATTTGGGCAATCCTCCACTCACGAGCTATCTTTTGAGGTTGAGTTAGGCCCAAGATCTATTTCTTTACAAGTTTAGACTCTGATATTTTTCTTGTTTCTTGTAAAATTTCTGATGAGTGCTTTGATCTCTACCAACTGCTTTTTTTTTTTCACTTTATCTAAACATACTTACTCTAGTTTGTTCTAATGGGCTAATGTACAGTACATTTTCAGATATATTTGATGAGAACCATTTCATCAAAGCATTAAGAGGAGACCTCATGATTATTAAAGAGCTTCCTAAAGAAATAGAATCTTTACCTCGAGCTAGGAAGCACTTCACGTCATGGTCAGGAGTGGGTTACTAT</genome_strand>
        <mrna_strand>AATGAAGATAATTCTGTTTGGGAAGCTTCAAAGAGCCATGGTTTACATCCATGCATTAAGCCAACTGCAAAATACAAAG................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCTAGGATGGAATCGCTACTTGACTGTAAAAAGTAATGGTGGATTAAATCAAATGAGGACGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGACATGGTGGCAGTGGCACATGTGATGAATGCAACTTTGGTAATTCCTCAATTGGACAAGCGTTCATTCTGGCAAGATTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTTGATGAGAACCATTTCATTAAAGCATTACGAGGAGACCTCATGATTATTAAAGAGCTTCCTAAAGAAATAGAATCTTTACCTCGAGCTAGGAAGCACTTCACGTCATGGTCAGGAGTGGGTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252889" ref_strand="+" ref_description="SGN-E252889 [cLEG-16-F8]">
      <seq>attcgactctctgaactctgaatcatcgaaaattgtgtaattttgtagccattgatgagtcgaggagtgtgaaattttgtataagaaatggggaacagaggccatactcagtacagaacgacaaggaggacatccaatttctcaattactctctacattttcctcttttttgttttgtcaatgttcgtattcttttattacactaaggatatcgtagaagatgaacaaaagcttgtcttggcatcggagaagaaggaagagcctgaattcgatgagaatgaagataattctgtttgggaagcttcaaagagccatggtttacatccatgcattaagccaactgcaaaatacaaagctgctctagggtggaaacgctacttgactgtaaaaagtaatggtggattaaatcaaatgaggacgggtatagctgacatggtggcagtggcacatgtgatgaatgcaactttggttattccctcattggacaagcgttcattctggcaagattcaagatatatttgatgagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="126195" stop="121186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125895" g_stop="125620" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125619" i_stop="125192" i_length="428">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125191" g_stop="125113" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="355" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="125112" i_stop="124713" i_length="400">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.471" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124712" g_stop="124645" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="423" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124644" i_stop="122071" i_length="2574">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122070" g_stop="121982" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="512" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121981" i_stop="121503" i_length="479">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.648" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121502" g_stop="121486" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="529" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E252889" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125895" e_stop="125620"/>
          <exon e_start="125191" e_stop="125113"/>
          <exon e_start="124712" e_stop="124645"/>
          <exon e_start="122070" e_stop="121982"/>
          <exon e_start="121502" e_stop="121486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGACTCTCTGAACTCTGAAGCATCGAAAATTGTGTAATTTTGTAGCCATTGATGAGTCGAGGAGTGTGAAATTTTGTATAAGAAATGGGGAACAGAGGCCATACTCAGTACAGAACGACAAGGAGGACATCCAATTTCTCAATTACTCTCTACATTTTCCTCTTTTTTGTTTTGTCAATGTTCGTATTCTTTTATTACACTAAGGATATCGTAGAAGATGAACAAAAGCTTGTCTTGGCATCGGAGAAGAAGGAAGAGCCTGAATTCGATGAGGTTGTTATTTAATTTATTTATTTCTTGAAATTGCTTAAAGTTTTCATTTTTATGGTGATTCTGCTGTGTTGTTTTGCTTATATTGCTTAGTTTATTGATGGGTGGTTTGAGCTGATCTTTTGTAATTTGGGCTAGAGAGTTTCTGGATATGTCATAATTTTCTGAAATTTTGCTTTTTATTGCATCAAGGGGTGGCCTAGTTGGTGGCGGAGTTAGGATTTTCAAGAAAAGGATTTGAAATATAAAAAGTACAGGCATATGTGAAATATTACTTTAACAATGTAGAAATAGTGTAGTTTTTTGTCGTAGGTTCGGAAGAACCCCTCAGCTCTTGCTTGCTACTCCCGTTGGCCTAGTTGTTAATGGAGTAGGTTGAGCACCATGAGATGACTTGTGTTAGTGAGAACGTCTTCTTTTGACTTTTGCAGAATGAAGATAATTCTGTTTGGGAAGCTTCAAAGAGCCATGGTTTACATCCATGCATTAAGCCAACTGCAAAATACAAAGGTTAAACTCTACTACTACAGCTTGTGCTTCTTTTGCTACCTGCTAGTTAATATGGAAAAAAGGTATCTCCATTGCCTTTTGGGAGCACTAATTTTTTCTGAATTTTGTAAAAGGGAAATACTTGATTATCTCAAGATCTCATTTTTCAGATTCTTTTTATAGGGTGTGGGGACAATTTTCTGTATGTCGTTTCTTATGTGTTCTATCAGTTCATGCCTGTGTTTGTTTAAAGCTGAAACAGCGTATTTCAGTCATAAAAATAGATAAAAGATCATGCCTTTGCTGTTTTCTATCAATTGCAATCTCTTAAACATGTACCAACTCATGCACAATATGAACCTTTTGTATGCTGTAACTTTTAAGCAGATAGTCTTATGCAGAATTTATACTTCTTGTCCAGCTGCTCTAGGGTGGAAACGCTACTTGACTGTAAAAAGTAATGGTGGATTAAATCAAATGAGGACGGGTGTAAGTTTGATCTTTCCTTAGATTTCTAATTTCCATTTTCTGTGTGTATGTTACATAATTGTTCTTGTTTTTAATCCACAATAATTCAAAGAAATTGCTTTCATGCTACGGTTAGACGAGCTAAAAGTGTGGATTAGCTTAAACATGTAAATGCTAGTGGGCATGTAGTAACTTGTATGCACTTCTACTTGTATATTCCTAGGGTATCATTCAACAAGTTAACTTGATTGAAGCTGAGCCATTTAAAACCTTCAGCTTAGAAATAGATATTAAAGTAAGACAAATTAAAGTGGGCCTTTAAGTTTATACGCTGTTTGGAATGAAGTCTGTAAAAATAGCATTCATAGATAAAGGGGGTGGGGGGGAAGTTAACAAAAAAAGCAGTCTCATACGAAGTTGTGTTGCTGCAAGGAAATAGCTAAATGATGCACTAGCAATTTGATGATTCTTTAAATTTGAGACATATTTGGTATACAGAAAAACACTTTTCTCATTTATACTTTTTATCACATAAAATAATCATAACATGTCATATGAATGGGAATTAGATTTCTATAAGACCAGAAAACGTTGTTCCCAGCAAGAAGACGATGAATTATGATTGTAAGTTGGCATAGTTTTGGAAAGAAATGGCAGATCTGGACATGTCTATTGGTTAAGGTTGACCTCGCCCAATTTTATTAGCTTGATCTCCTTTTCTCTTCATGGAAAATTAAATAAACGTCCAAGTTTTTGTGGCATCACAGAAACTTACATGTTAATTTTGTAAGTTTACTTCAAATCCTCAAAACCCTAACTTGGCAACAAAAAGAAAGAATGGTTATTTTGAAAACAGAGTTGCCACTTAATTTTGCAAGGCAATTATGAAAACCTTTAATTTTTAAAAAAAGATTCTAACAGAAAAATCTTTTCAAAATTTCAAAGATAGGGTTCCTATTAACATTTCGAGAAGGTTCTAAGCCCTTGAAATGTCTGCTTAACACATGGTTATCTGTTGATTTAACTAAACAATTATTTGACTAACTTAATTGATTGAAGAATTTCTTAAATTTTTTAATATGTGAAAGGAAAAAGTATTTTTGGCATTTTGTTGAAAAGAAAAGCTCTTTTGGACTGTTTGAAAAGAAAAACTCTTTTGAAACTCTCAAGGCAATCTAAGTTAATTTAAAACTTCAGTATTTAAGACAAATAAAATTACAAGGAACCAAAAATAAAACATAGCAACTCAAGGGGGATTCATCCAAGTTAGAATGAATGTTAGTATACAATACAATGAAATCAAGAAATAAGAGAAAATTTAAATTGGGCTCCTGAGACCCAATCTTTGCTACTAACAGATGATCTTCAGGCTCTATGCAGTATTACTGCTCCTACCCCATTTTATCTGCTCCTGCTGATGTAATTTCGGCCTCTGGACAGATTTATCTTCCATTTTCACACTGTTTGAGGCTGACTCAAAAGACATGTATTGAGCTTTAAGCAAATGCCAAAAATGATTGACTTAACTTAATGTCATACAATGCTTTGAAATTATGATAATAAAAATTTGAATAAGAACTCCATTTTTTGACCATTTTTGAGTTTTAACTCTATATCCAGATAATGAAATCATGCACCATACATATTTGATTCATATGTGTCAAATTAGAAACCTGGAACTTATCATACGTGTAAATCAAATTGAGTATTATGCTAACTAGAAGAATTAGTTTCCTCAAACCAAAGCTATCAGTCATACCAAATTCTATAGGTCACTAAGTTAACTTCAAATTCTTTCTCAAAATAAAATAAAATAGTTAACTTTAAATTGAAACATATCATAAAAATAAGATTTCATCTACTCTTAATCTACGAATTGAACATATCATAGAATAAGATATTCATCTACTCTTAATCCACTTTTAAAGTTACTAGATCAAATAATATTTTTACTTAGTAAGGAATTGACATGTTGCCAGGAAAATCTAAGACTCGATTTTTCAAAGATAGGCAAAATATCAGACAGGAAATAAACGCATAAGTGTCACTTTATTTTAAAGATGAGCTGATTTACGGGTGGAAAAAGGATGAGACGGACAGGAATTTGCCCGTGGATTTGGGATTTGCACATCCGAGGGTTGACTTGCGTTGAGCCTTGGTCTTCTTGTATCTTCAGCCGTTGCATTCCCAATATACGTTGATGTAGACATTATGAAATTCCCAATTTCTTGTATAATGGGTGGAAATAAAGTTTTCAAAGATGGGCGCTGAACCTTGGATAGGATGCCACGTATCTCGGCGTTGTTCGAACATACAAGGACTGATCTTTGATTTTCATTTATTCACGTTCACTCCAAGGGACAAAGTTCCATAAGTTTTGCTAATTTTGTTTTACATTGGTAAGATGATTATGCCATGACTTCTGAAGTGCTGACTCATGAATCATTATGTTGTTGGATGTAGTCCCGTCTCATTATTGAAATGTCATTCTGGTCATGCCCTTTCTTTAAGCAAATATATCCACATATTTATAAGTTAATGAAGTACTTTCCCCTTCAGTCTTAATTTTTTCATTTTGCTTCTTTTTGCTTACAGATAGCTGACATGGTGGCAGTGGCACATGTGATGAATGCAACTTTGGTAATTCCTCAATTGGACAAGCGTTCATTCTGGCAAGATTCAAGGTCATATTTTTTTCTGTACTGTATATCTTACAACTTCACATGGCTTGTCATTCTTTTAGAAATGTGTTTATATATGTAATGTATTGCTTAGATGGTGGTCTCCTTGTATGGACTTGTGCAGTCCCCTCCTCATGGGCTAGATTTTGAGGTTGAGTTAGGTCCAAGATTCATTTATTTACATGGTACCATAGCAGGACCCATCATACCCGATGTTGAGCCCCAAAATTAAATTGCCCATGCTCCAGCTGTCTGGTCTCTTTTTATGGATTTGGGCAATCCTCCACTCACGAGCTATCTTTTGAGGTTGAGTTAGGCCCAAGATCTATTTCTTTACAAGTTTAGACTCTGATATTTTTCTTGTTTCTTGTAAAATTTCTGATGAGTGCTTTGATCTCTACCAACTGCTTTTTTTTTTTCACTTTATCTAAACATACTTACTCTAGTTTGTTCTAATGGGCTAATGTACAGTACATTTTCAGATATATTTGATGAGAAC</genome_strand>
        <mrna_strand>ATTCGACTCTCTGAACTCTGAATCATCGAAAATTGTGTAATTTTGTAGCCATTGATGAGTCGAGGAGTGTGAAATTTTGTATAAGAAATGGGGAACAGAGGCCATACTCAGTACAGAACGACAAGGAGGACATCCAATTTCTCAATTACTCTCTACATTTTCCTCTTTTTTGTTTTGTCAATGTTCGTATTCTTTTATTACACTAAGGATATCGTAGAAGATGAACAAAAGCTTGTCTTGGCATCGGAGAAGAAGGAAGAGCCTGAATTCGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAGATAATTCTGTTTGGGAAGCTTCAAAGAGCCATGGTTTACATCCATGCATTAAGCCAACTGCAAAATACAAAG................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCTAGGGTGGAAACGCTACTTGACTGTAAAAAGTAATGGTGGATTAAATCAAATGAGGACGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGACATGGTGGCAGTGGCACATGTGATGAATGCAACTTTGGTTATTCCCTCATTGGACAAGCGTTCATTCTGGCAAGATTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTTGATGAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715962" ref_strand="+" ref_description="SGN-E715962 [FB15DA04]">
      <seq>gatagaaagagtttactccaatggcgtctggatggggaattacagggaataaaggacgatgctatgatttctggatggatttcagtgagtgtatgtctcgatgcagggagcccaaggactgtgtacttcttagagaagactacttcgagtgtcttcatcattccaaagagtatcaacgtaggaaccgaatctacaaagaggagcagcgccaattgagagctgcttcacaaaagaaaaaggaaggtgtagatggtggtggtggtggtcatcactgacctttattattcttgatcaatcatggttttatcaactaaaagacattgaagtaaactgtatgtggttttgaattttgaaataaagaattctatcagttgcatttgatgtgagttgcatcattgaaatgactcagttcagtttctttctcatatggcctggccttcgttttgttggtgataaggaacatatgttttaagggcacatttacttcttaccattggcactagacctatgatatcagttctttctttgaaatctgtgactcttacgtgtaatatgaaattcgcgatgggaagcctgcatcatgatgaaaagagctaggattttgctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="132926" stop="127662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132626" g_stop="132458" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132457" i_stop="128401" i_length="4057">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128400" g_stop="127961" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="610" r_length="440" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E715962" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132626" e_stop="132458"/>
          <exon e_start="128400" e_stop="127961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GA-AGAAAGAGTTTACTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAGGTACATTTCGATTTTTTTTCCCATTAGATTCCGATCTCTTTGGTATTTTCACCTTTGCTTAACAATCGTCCTTATCCTGAAGATTTAAACAACTCAGCAGTTCCATTAGGCAATTTGTCCTCAGCTGTATTTAGGGTTTTTAGAGATTTGATACTTTATAATCTGAATTGGTTCGAATAAAAGCTTCTCAGATTTGAATTCCCTCAAAGTATGGATTTTTTTTTCATTTTTCATCCAACATCAGATATATGTGTGGAACTGTAGGAGGTGATTTGCACTGTAGTTATTGATGATGGCGTTTATTAATTGACGAAGCAAGCAACTTGTTAATGAGTGGATGGAACTACAGAGAAACAATATGGATTGTAAGGTTTGTAGAAGTAAAATAGTAAACATGCTGAAAAAACTGTAAGTTTTGCTCTCATAAGAAGAACAAAAGTAAAGTGGGATTGGGCGAGATTATATTTCCTAAATGCAAACAATTTAGTTATCTGAGTCTAGTCTTACATGAGAATGACGTGATAGATAGAGATATAGCATATATAATGAAAATAGGATGGTTGAAGTGGAGGAGGTGCTGCATGATTACTATGTGATAGAAAGACACCTAATAAGTCAAAGGAAACTTCTATGGAATGGCTGTGAGAATAGCAATTTATATTATGGTAGTGAATATTGGTCCTCTAAGTTTCATCATATTAATAAAACAAGTAACATAGAAATGTGATGTTAAGATGGATATGCAGTCAGCAAGATGTACAAGATTAGAAACAACACATCAGAAAGATAGTTCAAGTAGCATACAGACATAAAATAAGAAAAGATTGATGAGATCGCTTGGCATGTATAGGGGAGGACCTCCATATATAGTATCCATTTATACTTGTACTGCACTCTTTCTTGGAATACCAAGGAATATAGATATTTGAAAATATTATGATTTTATGTCAAGGAAAATACATCTGATGAATCATACAGGGAAATGGAGAAAGTGGTATTTGTAAGTCAACCTATCGAAAAATTCACCAAATATGCATATGGCTGATGTCTAGTCGCCAAACATCATGGCAGGCTTACCAAGTATGCATGGATATCATTTCAAATAAATGCCTGTTTATCAATCTGGTTCATTATTTCAAACTTGAAAATAGAGAATTCAAAGTTTGAGGAGAGTTTATTGAGTAATATAATGGTTCACTTACAAGTCGTCAACTTTTTTCCAAGTGAATTTCATCTCCAAACACTACTTTAACATCCAAATATCCTTTTTCAATTTCAACTTACTCTTCTTTCCATTTCAAATTTTACCCAAAATTATGTCCAAATGCCAATTGATTCGTACTTGGTCTATATCAGTATAGCTGTTACTTTGAACTAGTTATGGTTCCCTTTAAGCTCTATTTGGGGGAAATTCAAGGTTACTGGCGATGACAAAATTTGGCTCACCAGCATGCCACATTATATATCTGCTAGATCTTTTCATTATTTGGATCATATCAAACACATTATGTGACTAAGCAGCTGAGGAGGACTTAAATTTAAGTAGGTGCTCTGAAGCCTTGTCATGTGATAAGAGATCTATAAATGATATATTTTGCTGATTGAAGGTCGTAAAATAACCCGAGATAGACCTAAATTAGTGGAGGGAAGTCGTCTCAAAAGACCTTTTAAGTTCTTTAGATTACAGATATTTTCTCATTCTTTGTAGCACAGATGTGGATTTCCACCCTTTGTCTATTTTAGAGTTATACCTGGACTTCTCTTCTTTTTTTTTGATAAAAAAGTTATACCTAGACATACCTCTTTGATTCGTCTTATTTAGGGTCTTTCACTCTTATCGAAAATAAAAACAAAAATTTAGGGTCTCTCAAGTGATTTCTTAGAGAAGCCATGAAAGCAAAGGCATTGCTATAAGTAGGAAATGGAAGTAGTCAATTTACAAGGACTGAACTGGAACATCTGTAGTTAAGCACCTTGTGTGCATTGTCTCGTCCTAAATCTGTAGAAAACATTACATCAGCTAATTTTTTATGGAGTCTCAAAAAGAGACGAATCTTGATTTATACAGCTATTTTTTTCCCTGTTATTTGATTTTGGCTCTTTCATTAATTGATCTTCTTGTCACTATCAGCATTACTATCTACTCTTCTGAGAAGCGTTGTTATTTTCTCTTGGAAGTGCCTCAAGCTACAGCCGAGATCTTTCTCATAAGTTGGGGGCTTGTGGTTAGGTGTTTTATGGTCCTGACAAGTTGTATAAACCTCATTACTTGATGTAGAAATTAGATTAGAAATTGGTGACAGGTGAAGTAATAGGAAAGAAGCTTCAATAGCTGTTTGTAGATCTCACCCAGCGAAGTAGCAAACCCTCCTTTCATTTTCCGTGTTGAGAGTACACATTTCAGTTTGTAGCTCATATACTACTTGTATTAATACATGCTTAATTATTCTAATATGTTAATGAGTGAAGTAAATGGTGGAAGCCTTTTCCAAGTTTAGCTACTGCAAGAAATTACCTACATCAAGGAAACTATGTTTTCTTAGACTTAATGGCATTAGTTGAGTGAGAAAGGTACCTTCTACTGTGATGGTGCCAAATAAATTATGATCTCTGTTCTCAAAGTCAGGATTTGCTAATCCCTGACCTTTGCAAAATCAGATATTTGTATGTAGAAAAACTTTGGCATTTATTTCTACCCCCAAAAGAAAGAAAAAGAAAAGAAAGTGATGGGAAGTACTTAATAATCTCAATGGGCAGTATTTCTCTCTGCTCATCTGAAAGTGATGTCTTTCGTCCCTGTTTATACAATCATCCTCTGTTCATCTTAATCATTGACTCAATGGGCAATACTTCTCTCTGCTCAACTGAAAGCGGCATCTTTCCTCCCTGTTTATAAAATCGTCCTCTGCTCTTCTCTTTGTCATATAGAGGCATGAATTTTGTAGAAACCTCTTCTTTTGACTAGTTATAATGTTTTAGGGACTAATGTATTTCCATTTAAAATCAGATGATGCAATTAGAAAATGCTCCACGTATATGGACATATACTTGCATGTGGTAACATTTTGTGAAATTATATTTGGTGAAAATTGTGGAGCATTGCTATCTCTCTAGTGTCTATGTTCCTTCAAATTAGGTTGAATTTGGAGCAAAGTCCCATTGATATCCAAGAATAGTCCTTGCCCGTTGAACGAATAAACTTTAACATCTATGGCAGACATTTTCCAGGGTGTGTGAGTGTCTTCTGACTTCAATATGTTAAATTAGGTATTGTGTCTGTGCTTCCTATCCTCTTCTTTTCATCTTATTGGGACACTTTAGTGCTCTACCTAGATTGTTGGATTACTAATCTACTGACATTTGAAACTCCGTATGGTACTCTGGTTTTCACTTTTCAGTCTTTCACAGTTCCACTATTTGTAGATCAAACTTGTTGGATCCTTTGCACCTCTTAATTCTACTTAGATTCATAGACTACTAACATACTATCCTACTTGTTCTGCTTATGTTATTGTTATTGCTCATGTTCAGGACAATGCTTTTTGATTGATTAGAACTCATTAAATTTGATTGATTTCCTTCTTAATTTAACCACAAATAAGCCCAAATTGGCCTTATAAGACACTTTGATATATGTATCAACTGAAGATTAAGAGATATTGAAGCCTTGAGGTGCATGAATTAGTAGTGTTCATGTGGTGTACCGGTGCCTTAAGCTCATTATTTTTCTGGGACAGACTATAGAACTCTATTACTTGGCTACTGTCGATGTCTTATACGATTGAGAGTTCTTTCTCTACTATGTTACTGCCCCACCTGCTACATGCTTGTCTCCTACTTATTAAAAAAATGGATATATGGTCATTCCCTCTTCACTTCCCCTCCTTTTGAGCTGTCGATGACCGACTGATTCAATCCATGTTGTCATTTTTGATGTGGTAAAATTCTTTGGAATTCTCTAGCTCAAAAACAAATGATGGCTCAGATATATTCATAAATCGTTTGGTACTTCTCATTGTACTCTTTAGTTACAGGGTTGTTGTTTCCTTTACTGCAGTATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTCATATGGCCTGGCCTTCGTTTTGTTGGTGATAAGGAACATATGTTTTAAGGGCACATTTACTTCTTACCATTGGCACTAGACCTATGATATCAGTTCTTTCTTTGAAATCTGTGACTCTTACGTGTAATATGAAATTCGCGATGGGAAGCCTGCATCATGATGAAAAGAGCTAGGATTTTGCTAAAT</genome_strand>
        <mrna_strand>GATAGAAAGAGTTTACTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTCATATGGCCTGGCCTTCGTTTTGTTGGTGATAAGGAACATATGTTTTAAGGGCACATTTACTTCTTACCATTGGCACTAGACCTATGATATCAGTTCTTTCTTTGAAATCTGTGACTCTTACGTGTAATATGAAATTCGCGATGGGAAGCCTGCATCATGATGAAAAGAGCTAGGATTTTGCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308770" ref_strand="+" ref_description="SGN-E308770 [cLEZ-11-M10]">
      <seq>gaagaagaaagagtttactccaatggcgtctggatggggaattacagggaataaaggacgatgctatgatttctggatggatttcagtgagtgtatgtctcgatgcagggagcccaaggactgtgtacttcttagagaagactacttcgagtgtcttcatcattccaaagagtatcaacgtaggaaccgaatctacaaagaggagcagcgccaattgagagctgcttcacaaaagaaaaaggaaggtgttgatggtggtggtggtggtcatcactgacctttattattcttgatcaatcatgggtttatcaactaaaagacattgaagtaaactgcatgtggttttgaattttgaaataaagaattctatcagttgcatttgatgtgagtcgcatcattgaaatgactcanttcagtttctttctcatatggcctggccttcgttatgtgggtgataaagaacatatattttaagggcacatttacttcttaccattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="132929" stop="127773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132629" g_stop="132458" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132457" i_stop="128401" i_length="4057">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128400" g_stop="128073" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="500" r_length="328" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E308770" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132629" e_stop="132458"/>
          <exon e_start="128400" e_stop="128073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAAGAGTTTACTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAGGTACATTTCGATTTTTTTTCCCATTAGATTCCGATCTCTTTGGTATTTTCACCTTTGCTTAACAATCGTCCTTATCCTGAAGATTTAAACAACTCAGCAGTTCCATTAGGCAATTTGTCCTCAGCTGTATTTAGGGTTTTTAGAGATTTGATACTTTATAATCTGAATTGGTTCGAATAAAAGCTTCTCAGATTTGAATTCCCTCAAAGTATGGATTTTTTTTTCATTTTTCATCCAACATCAGATATATGTGTGGAACTGTAGGAGGTGATTTGCACTGTAGTTATTGATGATGGCGTTTATTAATTGACGAAGCAAGCAACTTGTTAATGAGTGGATGGAACTACAGAGAAACAATATGGATTGTAAGGTTTGTAGAAGTAAAATAGTAAACATGCTGAAAAAACTGTAAGTTTTGCTCTCATAAGAAGAACAAAAGTAAAGTGGGATTGGGCGAGATTATATTTCCTAAATGCAAACAATTTAGTTATCTGAGTCTAGTCTTACATGAGAATGACGTGATAGATAGAGATATAGCATATATAATGAAAATAGGATGGTTGAAGTGGAGGAGGTGCTGCATGATTACTATGTGATAGAAAGACACCTAATAAGTCAAAGGAAACTTCTATGGAATGGCTGTGAGAATAGCAATTTATATTATGGTAGTGAATATTGGTCCTCTAAGTTTCATCATATTAATAAAACAAGTAACATAGAAATGTGATGTTAAGATGGATATGCAGTCAGCAAGATGTACAAGATTAGAAACAACACATCAGAAAGATAGTTCAAGTAGCATACAGACATAAAATAAGAAAAGATTGATGAGATCGCTTGGCATGTATAGGGGAGGACCTCCATATATAGTATCCATTTATACTTGTACTGCACTCTTTCTTGGAATACCAAGGAATATAGATATTTGAAAATATTATGATTTTATGTCAAGGAAAATACATCTGATGAATCATACAGGGAAATGGAGAAAGTGGTATTTGTAAGTCAACCTATCGAAAAATTCACCAAATATGCATATGGCTGATGTCTAGTCGCCAAACATCATGGCAGGCTTACCAAGTATGCATGGATATCATTTCAAATAAATGCCTGTTTATCAATCTGGTTCATTATTTCAAACTTGAAAATAGAGAATTCAAAGTTTGAGGAGAGTTTATTGAGTAATATAATGGTTCACTTACAAGTCGTCAACTTTTTTCCAAGTGAATTTCATCTCCAAACACTACTTTAACATCCAAATATCCTTTTTCAATTTCAACTTACTCTTCTTTCCATTTCAAATTTTACCCAAAATTATGTCCAAATGCCAATTGATTCGTACTTGGTCTATATCAGTATAGCTGTTACTTTGAACTAGTTATGGTTCCCTTTAAGCTCTATTTGGGGGAAATTCAAGGTTACTGGCGATGACAAAATTTGGCTCACCAGCATGCCACATTATATATCTGCTAGATCTTTTCATTATTTGGATCATATCAAACACATTATGTGACTAAGCAGCTGAGGAGGACTTAAATTTAAGTAGGTGCTCTGAAGCCTTGTCATGTGATAAGAGATCTATAAATGATATATTTTGCTGATTGAAGGTCGTAAAATAACCCGAGATAGACCTAAATTAGTGGAGGGAAGTCGTCTCAAAAGACCTTTTAAGTTCTTTAGATTACAGATATTTTCTCATTCTTTGTAGCACAGATGTGGATTTCCACCCTTTGTCTATTTTAGAGTTATACCTGGACTTCTCTTCTTTTTTTTTGATAAAAAAGTTATACCTAGACATACCTCTTTGATTCGTCTTATTTAGGGTCTTTCACTCTTATCGAAAATAAAAACAAAAATTTAGGGTCTCTCAAGTGATTTCTTAGAGAAGCCATGAAAGCAAAGGCATTGCTATAAGTAGGAAATGGAAGTAGTCAATTTACAAGGACTGAACTGGAACATCTGTAGTTAAGCACCTTGTGTGCATTGTCTCGTCCTAAATCTGTAGAAAACATTACATCAGCTAATTTTTTATGGAGTCTCAAAAAGAGACGAATCTTGATTTATACAGCTATTTTTTTCCCTGTTATTTGATTTTGGCTCTTTCATTAATTGATCTTCTTGTCACTATCAGCATTACTATCTACTCTTCTGAGAAGCGTTGTTATTTTCTCTTGGAAGTGCCTCAAGCTACAGCCGAGATCTTTCTCATAAGTTGGGGGCTTGTGGTTAGGTGTTTTATGGTCCTGACAAGTTGTATAAACCTCATTACTTGATGTAGAAATTAGATTAGAAATTGGTGACAGGTGAAGTAATAGGAAAGAAGCTTCAATAGCTGTTTGTAGATCTCACCCAGCGAAGTAGCAAACCCTCCTTTCATTTTCCGTGTTGAGAGTACACATTTCAGTTTGTAGCTCATATACTACTTGTATTAATACATGCTTAATTATTCTAATATGTTAATGAGTGAAGTAAATGGTGGAAGCCTTTTCCAAGTTTAGCTACTGCAAGAAATTACCTACATCAAGGAAACTATGTTTTCTTAGACTTAATGGCATTAGTTGAGTGAGAAAGGTACCTTCTACTGTGATGGTGCCAAATAAATTATGATCTCTGTTCTCAAAGTCAGGATTTGCTAATCCCTGACCTTTGCAAAATCAGATATTTGTATGTAGAAAAACTTTGGCATTTATTTCTACCCCCAAAAGAAAGAAAAAGAAAAGAAAGTGATGGGAAGTACTTAATAATCTCAATGGGCAGTATTTCTCTCTGCTCATCTGAAAGTGATGTCTTTCGTCCCTGTTTATACAATCATCCTCTGTTCATCTTAATCATTGACTCAATGGGCAATACTTCTCTCTGCTCAACTGAAAGCGGCATCTTTCCTCCCTGTTTATAAAATCGTCCTCTGCTCTTCTCTTTGTCATATAGAGGCATGAATTTTGTAGAAACCTCTTCTTTTGACTAGTTATAATGTTTTAGGGACTAATGTATTTCCATTTAAAATCAGATGATGCAATTAGAAAATGCTCCACGTATATGGACATATACTTGCATGTGGTAACATTTTGTGAAATTATATTTGGTGAAAATTGTGGAGCATTGCTATCTCTCTAGTGTCTATGTTCCTTCAAATTAGGTTGAATTTGGAGCAAAGTCCCATTGATATCCAAGAATAGTCCTTGCCCGTTGAACGAATAAACTTTAACATCTATGGCAGACATTTTCCAGGGTGTGTGAGTGTCTTCTGACTTCAATATGTTAAATTAGGTATTGTGTCTGTGCTTCCTATCCTCTTCTTTTCATCTTATTGGGACACTTTAGTGCTCTACCTAGATTGTTGGATTACTAATCTACTGACATTTGAAACTCCGTATGGTACTCTGGTTTTCACTTTTCAGTCTTTCACAGTTCCACTATTTGTAGATCAAACTTGTTGGATCCTTTGCACCTCTTAATTCTACTTAGATTCATAGACTACTAACATACTATCCTACTTGTTCTGCTTATGTTATTGTTATTGCTCATGTTCAGGACAATGCTTTTTGATTGATTAGAACTCATTAAATTTGATTGATTTCCTTCTTAATTTAACCACAAATAAGCCCAAATTGGCCTTATAAGACACTTTGATATATGTATCAACTGAAGATTAAGAGATATTGAAGCCTTGAGGTGCATGAATTAGTAGTGTTCATGTGGTGTACCGGTGCCTTAAGCTCATTATTTTTCTGGGACAGACTATAGAACTCTATTACTTGGCTACTGTCGATGTCTTATACGATTGAGAGTTCTTTCTCTACTATGTTACTGCCCCACCTGCTACATGCTTGTCTCCTACTTATTAAAAAAATGGATATATGGTCATTCCCTCTTCACTTCCCCTCCTTTTGAGCTGTCGATGACCGACTGATTCAATCCATGTTGTCATTTTTGATGTGGTAAAATTCTTTGGAATTCTCTAGCTCAAAAACAAATGATGGCTCAGATATATTCATAAATCGTTTGGTACTTCTCATTGTACTCTTTAGTTACAGGGTTGTTGTTTCCTTTACTGCAGTATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTCATATGGCCTGGCCTTCGTTTTGTTGGTGATAAGGAACATATGTTTTAAGGGCACATTTACTTCTTACCATTGGC</genome_strand>
        <mrna_strand>GAAGAAGAAAGAGTTTACTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTTGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGGTTTATCAACTAAAAGACATTGAAGTAAACTGCATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTCGCATCATTGAAATGACTCANTTCAGTTTCTTTCTCATATGGCCTGGCCTTCGTTATGTGGGTGATAAAGAACATATATTTTAAGGGCACATTTACTTCTTACCATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218343" ref_strand="+" ref_description="SGN-E218343 [cLEL-18-B24](-)">
      <seq>gatttcagtgagtgtatgtctcgatgcagggagcccaaggactgtgtacttcttagagaagactacttcgagtgtcttcatcattccaaagagtatcaacgtaggaaccgaatctacaaagaggagcagcgccaattgagagctgcttcacaaaagaaaaaggaaggtgtagatggtggtggtggtggtcatcactgacctttattattcttgatcaatcatggttttatcaactaaaagacattgaagtaaactgtatgtggttttgaattttgaaataaagaattctatcagttgcatttgatgtgagttgcatcattgaaatgactcagttcagtttctttctcatatggcctggccttcgttttgttggtgataaggaacatatgttttaagggcacatttacttcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="132850" stop="127781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132550" g_stop="132458" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132457" i_stop="128401" i_length="4057">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128400" g_stop="128081" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="413" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="433"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E218343" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132550" e_stop="132458"/>
          <exon e_start="128400" e_stop="128081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAGGTACATTTCGATTTTTTTTCCCATTAGATTCCGATCTCTTTGGTATTTTCACCTTTGCTTAACAATCGTCCTTATCCTGAAGATTTAAACAACTCAGCAGTTCCATTAGGCAATTTGTCCTCAGCTGTATTTAGGGTTTTTAGAGATTTGATACTTTATAATCTGAATTGGTTCGAATAAAAGCTTCTCAGATTTGAATTCCCTCAAAGTATGGATTTTTTTTTCATTTTTCATCCAACATCAGATATATGTGTGGAACTGTAGGAGGTGATTTGCACTGTAGTTATTGATGATGGCGTTTATTAATTGACGAAGCAAGCAACTTGTTAATGAGTGGATGGAACTACAGAGAAACAATATGGATTGTAAGGTTTGTAGAAGTAAAATAGTAAACATGCTGAAAAAACTGTAAGTTTTGCTCTCATAAGAAGAACAAAAGTAAAGTGGGATTGGGCGAGATTATATTTCCTAAATGCAAACAATTTAGTTATCTGAGTCTAGTCTTACATGAGAATGACGTGATAGATAGAGATATAGCATATATAATGAAAATAGGATGGTTGAAGTGGAGGAGGTGCTGCATGATTACTATGTGATAGAAAGACACCTAATAAGTCAAAGGAAACTTCTATGGAATGGCTGTGAGAATAGCAATTTATATTATGGTAGTGAATATTGGTCCTCTAAGTTTCATCATATTAATAAAACAAGTAACATAGAAATGTGATGTTAAGATGGATATGCAGTCAGCAAGATGTACAAGATTAGAAACAACACATCAGAAAGATAGTTCAAGTAGCATACAGACATAAAATAAGAAAAGATTGATGAGATCGCTTGGCATGTATAGGGGAGGACCTCCATATATAGTATCCATTTATACTTGTACTGCACTCTTTCTTGGAATACCAAGGAATATAGATATTTGAAAATATTATGATTTTATGTCAAGGAAAATACATCTGATGAATCATACAGGGAAATGGAGAAAGTGGTATTTGTAAGTCAACCTATCGAAAAATTCACCAAATATGCATATGGCTGATGTCTAGTCGCCAAACATCATGGCAGGCTTACCAAGTATGCATGGATATCATTTCAAATAAATGCCTGTTTATCAATCTGGTTCATTATTTCAAACTTGAAAATAGAGAATTCAAAGTTTGAGGAGAGTTTATTGAGTAATATAATGGTTCACTTACAAGTCGTCAACTTTTTTCCAAGTGAATTTCATCTCCAAACACTACTTTAACATCCAAATATCCTTTTTCAATTTCAACTTACTCTTCTTTCCATTTCAAATTTTACCCAAAATTATGTCCAAATGCCAATTGATTCGTACTTGGTCTATATCAGTATAGCTGTTACTTTGAACTAGTTATGGTTCCCTTTAAGCTCTATTTGGGGGAAATTCAAGGTTACTGGCGATGACAAAATTTGGCTCACCAGCATGCCACATTATATATCTGCTAGATCTTTTCATTATTTGGATCATATCAAACACATTATGTGACTAAGCAGCTGAGGAGGACTTAAATTTAAGTAGGTGCTCTGAAGCCTTGTCATGTGATAAGAGATCTATAAATGATATATTTTGCTGATTGAAGGTCGTAAAATAACCCGAGATAGACCTAAATTAGTGGAGGGAAGTCGTCTCAAAAGACCTTTTAAGTTCTTTAGATTACAGATATTTTCTCATTCTTTGTAGCACAGATGTGGATTTCCACCCTTTGTCTATTTTAGAGTTATACCTGGACTTCTCTTCTTTTTTTTTGATAAAAAAGTTATACCTAGACATACCTCTTTGATTCGTCTTATTTAGGGTCTTTCACTCTTATCGAAAATAAAAACAAAAATTTAGGGTCTCTCAAGTGATTTCTTAGAGAAGCCATGAAAGCAAAGGCATTGCTATAAGTAGGAAATGGAAGTAGTCAATTTACAAGGACTGAACTGGAACATCTGTAGTTAAGCACCTTGTGTGCATTGTCTCGTCCTAAATCTGTAGAAAACATTACATCAGCTAATTTTTTATGGAGTCTCAAAAAGAGACGAATCTTGATTTATACAGCTATTTTTTTCCCTGTTATTTGATTTTGGCTCTTTCATTAATTGATCTTCTTGTCACTATCAGCATTACTATCTACTCTTCTGAGAAGCGTTGTTATTTTCTCTTGGAAGTGCCTCAAGCTACAGCCGAGATCTTTCTCATAAGTTGGGGGCTTGTGGTTAGGTGTTTTATGGTCCTGACAAGTTGTATAAACCTCATTACTTGATGTAGAAATTAGATTAGAAATTGGTGACAGGTGAAGTAATAGGAAAGAAGCTTCAATAGCTGTTTGTAGATCTCACCCAGCGAAGTAGCAAACCCTCCTTTCATTTTCCGTGTTGAGAGTACACATTTCAGTTTGTAGCTCATATACTACTTGTATTAATACATGCTTAATTATTCTAATATGTTAATGAGTGAAGTAAATGGTGGAAGCCTTTTCCAAGTTTAGCTACTGCAAGAAATTACCTACATCAAGGAAACTATGTTTTCTTAGACTTAATGGCATTAGTTGAGTGAGAAAGGTACCTTCTACTGTGATGGTGCCAAATAAATTATGATCTCTGTTCTCAAAGTCAGGATTTGCTAATCCCTGACCTTTGCAAAATCAGATATTTGTATGTAGAAAAACTTTGGCATTTATTTCTACCCCCAAAAGAAAGAAAAAGAAAAGAAAGTGATGGGAAGTACTTAATAATCTCAATGGGCAGTATTTCTCTCTGCTCATCTGAAAGTGATGTCTTTCGTCCCTGTTTATACAATCATCCTCTGTTCATCTTAATCATTGACTCAATGGGCAATACTTCTCTCTGCTCAACTGAAAGCGGCATCTTTCCTCCCTGTTTATAAAATCGTCCTCTGCTCTTCTCTTTGTCATATAGAGGCATGAATTTTGTAGAAACCTCTTCTTTTGACTAGTTATAATGTTTTAGGGACTAATGTATTTCCATTTAAAATCAGATGATGCAATTAGAAAATGCTCCACGTATATGGACATATACTTGCATGTGGTAACATTTTGTGAAATTATATTTGGTGAAAATTGTGGAGCATTGCTATCTCTCTAGTGTCTATGTTCCTTCAAATTAGGTTGAATTTGGAGCAAAGTCCCATTGATATCCAAGAATAGTCCTTGCCCGTTGAACGAATAAACTTTAACATCTATGGCAGACATTTTCCAGGGTGTGTGAGTGTCTTCTGACTTCAATATGTTAAATTAGGTATTGTGTCTGTGCTTCCTATCCTCTTCTTTTCATCTTATTGGGACACTTTAGTGCTCTACCTAGATTGTTGGATTACTAATCTACTGACATTTGAAACTCCGTATGGTACTCTGGTTTTCACTTTTCAGTCTTTCACAGTTCCACTATTTGTAGATCAAACTTGTTGGATCCTTTGCACCTCTTAATTCTACTTAGATTCATAGACTACTAACATACTATCCTACTTGTTCTGCTTATGTTATTGTTATTGCTCATGTTCAGGACAATGCTTTTTGATTGATTAGAACTCATTAAATTTGATTGATTTCCTTCTTAATTTAACCACAAATAAGCCCAAATTGGCCTTATAAGACACTTTGATATATGTATCAACTGAAGATTAAGAGATATTGAAGCCTTGAGGTGCATGAATTAGTAGTGTTCATGTGGTGTACCGGTGCCTTAAGCTCATTATTTTTCTGGGACAGACTATAGAACTCTATTACTTGGCTACTGTCGATGTCTTATACGATTGAGAGTTCTTTCTCTACTATGTTACTGCCCCACCTGCTACATGCTTGTCTCCTACTTATTAAAAAAATGGATATATGGTCATTCCCTCTTCACTTCCCCTCCTTTTGAGCTGTCGATGACCGACTGATTCAATCCATGTTGTCATTTTTGATGTGGTAAAATTCTTTGGAATTCTCTAGCTCAAAAACAAATGATGGCTCAGATATATTCATAAATCGTTTGGTACTTCTCATTGTACTCTTTAGTTACAGGGTTGTTGTTTCCTTTACTGCAGTATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTCATATGGCCTGGCCTTCGTTTTGTTGGTGATAAGGAACATATGTTTTAAGGGCACATTTACTTCTTA</genome_strand>
        <mrna_strand>GATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTCATATGGCCTGGCCTTCGTTTTGTTGGTGATAAGGAACATATGTTTTAAGGGCACATTTACTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733394" ref_strand="+" ref_description="SGN-E733394 [LB04DC02]">
      <seq>cggtagaagaaagagtttactccaatggcgtctggatggggaattacagggaataaaggacgatgctatgatttctggatggatttcagtgagtgtatgtctcgatgcagggagcccaaggactgtgtacttcttagagaagactacttcgagtgtcttcatcattccaaagagtatcaacgtaggaaccgaatctacaaagaggagcagcgccaattgagagctgcttcacaaaagaaaaaggaaggtgtagatggtggtggtggtggtcatcactgacctttattattcttgatcaatcatggttttatcaactaaaagacattgaagtaaactgtatgtggttttgaattttgaaataaagaattctatcagttgcatttgatgtgagttgcatcattgaaatgactcagttcagtttctttctcnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="132930" stop="127847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132631" g_stop="132458" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132457" i_stop="128401" i_length="4057">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128400" g_stop="128147" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="428" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="467"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E733394" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132631" e_stop="132458"/>
          <exon e_start="128400" e_stop="128147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAAGAAAGAGTTTACTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAGGTACATTTCGATTTTTTTTCCCATTAGATTCCGATCTCTTTGGTATTTTCACCTTTGCTTAACAATCGTCCTTATCCTGAAGATTTAAACAACTCAGCAGTTCCATTAGGCAATTTGTCCTCAGCTGTATTTAGGGTTTTTAGAGATTTGATACTTTATAATCTGAATTGGTTCGAATAAAAGCTTCTCAGATTTGAATTCCCTCAAAGTATGGATTTTTTTTTCATTTTTCATCCAACATCAGATATATGTGTGGAACTGTAGGAGGTGATTTGCACTGTAGTTATTGATGATGGCGTTTATTAATTGACGAAGCAAGCAACTTGTTAATGAGTGGATGGAACTACAGAGAAACAATATGGATTGTAAGGTTTGTAGAAGTAAAATAGTAAACATGCTGAAAAAACTGTAAGTTTTGCTCTCATAAGAAGAACAAAAGTAAAGTGGGATTGGGCGAGATTATATTTCCTAAATGCAAACAATTTAGTTATCTGAGTCTAGTCTTACATGAGAATGACGTGATAGATAGAGATATAGCATATATAATGAAAATAGGATGGTTGAAGTGGAGGAGGTGCTGCATGATTACTATGTGATAGAAAGACACCTAATAAGTCAAAGGAAACTTCTATGGAATGGCTGTGAGAATAGCAATTTATATTATGGTAGTGAATATTGGTCCTCTAAGTTTCATCATATTAATAAAACAAGTAACATAGAAATGTGATGTTAAGATGGATATGCAGTCAGCAAGATGTACAAGATTAGAAACAACACATCAGAAAGATAGTTCAAGTAGCATACAGACATAAAATAAGAAAAGATTGATGAGATCGCTTGGCATGTATAGGGGAGGACCTCCATATATAGTATCCATTTATACTTGTACTGCACTCTTTCTTGGAATACCAAGGAATATAGATATTTGAAAATATTATGATTTTATGTCAAGGAAAATACATCTGATGAATCATACAGGGAAATGGAGAAAGTGGTATTTGTAAGTCAACCTATCGAAAAATTCACCAAATATGCATATGGCTGATGTCTAGTCGCCAAACATCATGGCAGGCTTACCAAGTATGCATGGATATCATTTCAAATAAATGCCTGTTTATCAATCTGGTTCATTATTTCAAACTTGAAAATAGAGAATTCAAAGTTTGAGGAGAGTTTATTGAGTAATATAATGGTTCACTTACAAGTCGTCAACTTTTTTCCAAGTGAATTTCATCTCCAAACACTACTTTAACATCCAAATATCCTTTTTCAATTTCAACTTACTCTTCTTTCCATTTCAAATTTTACCCAAAATTATGTCCAAATGCCAATTGATTCGTACTTGGTCTATATCAGTATAGCTGTTACTTTGAACTAGTTATGGTTCCCTTTAAGCTCTATTTGGGGGAAATTCAAGGTTACTGGCGATGACAAAATTTGGCTCACCAGCATGCCACATTATATATCTGCTAGATCTTTTCATTATTTGGATCATATCAAACACATTATGTGACTAAGCAGCTGAGGAGGACTTAAATTTAAGTAGGTGCTCTGAAGCCTTGTCATGTGATAAGAGATCTATAAATGATATATTTTGCTGATTGAAGGTCGTAAAATAACCCGAGATAGACCTAAATTAGTGGAGGGAAGTCGTCTCAAAAGACCTTTTAAGTTCTTTAGATTACAGATATTTTCTCATTCTTTGTAGCACAGATGTGGATTTCCACCCTTTGTCTATTTTAGAGTTATACCTGGACTTCTCTTCTTTTTTTTTGATAAAAAAGTTATACCTAGACATACCTCTTTGATTCGTCTTATTTAGGGTCTTTCACTCTTATCGAAAATAAAAACAAAAATTTAGGGTCTCTCAAGTGATTTCTTAGAGAAGCCATGAAAGCAAAGGCATTGCTATAAGTAGGAAATGGAAGTAGTCAATTTACAAGGACTGAACTGGAACATCTGTAGTTAAGCACCTTGTGTGCATTGTCTCGTCCTAAATCTGTAGAAAACATTACATCAGCTAATTTTTTATGGAGTCTCAAAAAGAGACGAATCTTGATTTATACAGCTATTTTTTTCCCTGTTATTTGATTTTGGCTCTTTCATTAATTGATCTTCTTGTCACTATCAGCATTACTATCTACTCTTCTGAGAAGCGTTGTTATTTTCTCTTGGAAGTGCCTCAAGCTACAGCCGAGATCTTTCTCATAAGTTGGGGGCTTGTGGTTAGGTGTTTTATGGTCCTGACAAGTTGTATAAACCTCATTACTTGATGTAGAAATTAGATTAGAAATTGGTGACAGGTGAAGTAATAGGAAAGAAGCTTCAATAGCTGTTTGTAGATCTCACCCAGCGAAGTAGCAAACCCTCCTTTCATTTTCCGTGTTGAGAGTACACATTTCAGTTTGTAGCTCATATACTACTTGTATTAATACATGCTTAATTATTCTAATATGTTAATGAGTGAAGTAAATGGTGGAAGCCTTTTCCAAGTTTAGCTACTGCAAGAAATTACCTACATCAAGGAAACTATGTTTTCTTAGACTTAATGGCATTAGTTGAGTGAGAAAGGTACCTTCTACTGTGATGGTGCCAAATAAATTATGATCTCTGTTCTCAAAGTCAGGATTTGCTAATCCCTGACCTTTGCAAAATCAGATATTTGTATGTAGAAAAACTTTGGCATTTATTTCTACCCCCAAAAGAAAGAAAAAGAAAAGAAAGTGATGGGAAGTACTTAATAATCTCAATGGGCAGTATTTCTCTCTGCTCATCTGAAAGTGATGTCTTTCGTCCCTGTTTATACAATCATCCTCTGTTCATCTTAATCATTGACTCAATGGGCAATACTTCTCTCTGCTCAACTGAAAGCGGCATCTTTCCTCCCTGTTTATAAAATCGTCCTCTGCTCTTCTCTTTGTCATATAGAGGCATGAATTTTGTAGAAACCTCTTCTTTTGACTAGTTATAATGTTTTAGGGACTAATGTATTTCCATTTAAAATCAGATGATGCAATTAGAAAATGCTCCACGTATATGGACATATACTTGCATGTGGTAACATTTTGTGAAATTATATTTGGTGAAAATTGTGGAGCATTGCTATCTCTCTAGTGTCTATGTTCCTTCAAATTAGGTTGAATTTGGAGCAAAGTCCCATTGATATCCAAGAATAGTCCTTGCCCGTTGAACGAATAAACTTTAACATCTATGGCAGACATTTTCCAGGGTGTGTGAGTGTCTTCTGACTTCAATATGTTAAATTAGGTATTGTGTCTGTGCTTCCTATCCTCTTCTTTTCATCTTATTGGGACACTTTAGTGCTCTACCTAGATTGTTGGATTACTAATCTACTGACATTTGAAACTCCGTATGGTACTCTGGTTTTCACTTTTCAGTCTTTCACAGTTCCACTATTTGTAGATCAAACTTGTTGGATCCTTTGCACCTCTTAATTCTACTTAGATTCATAGACTACTAACATACTATCCTACTTGTTCTGCTTATGTTATTGTTATTGCTCATGTTCAGGACAATGCTTTTTGATTGATTAGAACTCATTAAATTTGATTGATTTCCTTCTTAATTTAACCACAAATAAGCCCAAATTGGCCTTATAAGACACTTTGATATATGTATCAACTGAAGATTAAGAGATATTGAAGCCTTGAGGTGCATGAATTAGTAGTGTTCATGTGGTGTACCGGTGCCTTAAGCTCATTATTTTTCTGGGACAGACTATAGAACTCTATTACTTGGCTACTGTCGATGTCTTATACGATTGAGAGTTCTTTCTCTACTATGTTACTGCCCCACCTGCTACATGCTTGTCTCCTACTTATTAAAAAAATGGATATATGGTCATTCCCTCTTCACTTCCCCTCCTTTTGAGCTGTCGATGACCGACTGATTCAATCCATGTTGTCATTTTTGATGTGGTAAAATTCTTTGGAATTCTCTAGCTCAAAAACAAATGATGGCTCAGATATATTCATAAATCGTTTGGTACTTCTCATTGTACTCTTTAGTTACAGGGTTGTTGTTTCCTTTACTGCAGTATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTC</genome_strand>
        <mrna_strand>CGGTAGAAGAAAGAGTTTACTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540401" ref_strand="+" ref_description="SGN-E540401 [TUS-60-K14](-)">
      <seq>ctccaatggcgtctggatggggaattacagggaataaaggacgatgctatgatttctggatggatttcagtgagtgtatgtctcgatgcagggagcccaaggactgtgtacttcttagagaagactacttcgagtgtcttcatcattccaaagagtatcaacgtaggaaccgaatctacaaagaggagcagcgccaattgagagctgcttcacaaaagaaaaaggaaggtgtagatggtggtggtggtggtcatcactgacctttattattcttgatcaatcatggttttatcaactaaaagacattgaagtaaactgtatgtggttttgaattttgaaataaagaattctatcagttgcatttgctgtgagttgcatcattgaaatgactcagttcagtttctttctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="132912" stop="127844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132612" g_stop="132458" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132457" i_stop="128401" i_length="4057">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128400" g_stop="128147" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="409" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E540401" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132612" e_stop="132458"/>
          <exon e_start="128400" e_stop="128147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAGGTACATTTCGATTTTTTTTCCCATTAGATTCCGATCTCTTTGGTATTTTCACCTTTGCTTAACAATCGTCCTTATCCTGAAGATTTAAACAACTCAGCAGTTCCATTAGGCAATTTGTCCTCAGCTGTATTTAGGGTTTTTAGAGATTTGATACTTTATAATCTGAATTGGTTCGAATAAAAGCTTCTCAGATTTGAATTCCCTCAAAGTATGGATTTTTTTTTCATTTTTCATCCAACATCAGATATATGTGTGGAACTGTAGGAGGTGATTTGCACTGTAGTTATTGATGATGGCGTTTATTAATTGACGAAGCAAGCAACTTGTTAATGAGTGGATGGAACTACAGAGAAACAATATGGATTGTAAGGTTTGTAGAAGTAAAATAGTAAACATGCTGAAAAAACTGTAAGTTTTGCTCTCATAAGAAGAACAAAAGTAAAGTGGGATTGGGCGAGATTATATTTCCTAAATGCAAACAATTTAGTTATCTGAGTCTAGTCTTACATGAGAATGACGTGATAGATAGAGATATAGCATATATAATGAAAATAGGATGGTTGAAGTGGAGGAGGTGCTGCATGATTACTATGTGATAGAAAGACACCTAATAAGTCAAAGGAAACTTCTATGGAATGGCTGTGAGAATAGCAATTTATATTATGGTAGTGAATATTGGTCCTCTAAGTTTCATCATATTAATAAAACAAGTAACATAGAAATGTGATGTTAAGATGGATATGCAGTCAGCAAGATGTACAAGATTAGAAACAACACATCAGAAAGATAGTTCAAGTAGCATACAGACATAAAATAAGAAAAGATTGATGAGATCGCTTGGCATGTATAGGGGAGGACCTCCATATATAGTATCCATTTATACTTGTACTGCACTCTTTCTTGGAATACCAAGGAATATAGATATTTGAAAATATTATGATTTTATGTCAAGGAAAATACATCTGATGAATCATACAGGGAAATGGAGAAAGTGGTATTTGTAAGTCAACCTATCGAAAAATTCACCAAATATGCATATGGCTGATGTCTAGTCGCCAAACATCATGGCAGGCTTACCAAGTATGCATGGATATCATTTCAAATAAATGCCTGTTTATCAATCTGGTTCATTATTTCAAACTTGAAAATAGAGAATTCAAAGTTTGAGGAGAGTTTATTGAGTAATATAATGGTTCACTTACAAGTCGTCAACTTTTTTCCAAGTGAATTTCATCTCCAAACACTACTTTAACATCCAAATATCCTTTTTCAATTTCAACTTACTCTTCTTTCCATTTCAAATTTTACCCAAAATTATGTCCAAATGCCAATTGATTCGTACTTGGTCTATATCAGTATAGCTGTTACTTTGAACTAGTTATGGTTCCCTTTAAGCTCTATTTGGGGGAAATTCAAGGTTACTGGCGATGACAAAATTTGGCTCACCAGCATGCCACATTATATATCTGCTAGATCTTTTCATTATTTGGATCATATCAAACACATTATGTGACTAAGCAGCTGAGGAGGACTTAAATTTAAGTAGGTGCTCTGAAGCCTTGTCATGTGATAAGAGATCTATAAATGATATATTTTGCTGATTGAAGGTCGTAAAATAACCCGAGATAGACCTAAATTAGTGGAGGGAAGTCGTCTCAAAAGACCTTTTAAGTTCTTTAGATTACAGATATTTTCTCATTCTTTGTAGCACAGATGTGGATTTCCACCCTTTGTCTATTTTAGAGTTATACCTGGACTTCTCTTCTTTTTTTTTGATAAAAAAGTTATACCTAGACATACCTCTTTGATTCGTCTTATTTAGGGTCTTTCACTCTTATCGAAAATAAAAACAAAAATTTAGGGTCTCTCAAGTGATTTCTTAGAGAAGCCATGAAAGCAAAGGCATTGCTATAAGTAGGAAATGGAAGTAGTCAATTTACAAGGACTGAACTGGAACATCTGTAGTTAAGCACCTTGTGTGCATTGTCTCGTCCTAAATCTGTAGAAAACATTACATCAGCTAATTTTTTATGGAGTCTCAAAAAGAGACGAATCTTGATTTATACAGCTATTTTTTTCCCTGTTATTTGATTTTGGCTCTTTCATTAATTGATCTTCTTGTCACTATCAGCATTACTATCTACTCTTCTGAGAAGCGTTGTTATTTTCTCTTGGAAGTGCCTCAAGCTACAGCCGAGATCTTTCTCATAAGTTGGGGGCTTGTGGTTAGGTGTTTTATGGTCCTGACAAGTTGTATAAACCTCATTACTTGATGTAGAAATTAGATTAGAAATTGGTGACAGGTGAAGTAATAGGAAAGAAGCTTCAATAGCTGTTTGTAGATCTCACCCAGCGAAGTAGCAAACCCTCCTTTCATTTTCCGTGTTGAGAGTACACATTTCAGTTTGTAGCTCATATACTACTTGTATTAATACATGCTTAATTATTCTAATATGTTAATGAGTGAAGTAAATGGTGGAAGCCTTTTCCAAGTTTAGCTACTGCAAGAAATTACCTACATCAAGGAAACTATGTTTTCTTAGACTTAATGGCATTAGTTGAGTGAGAAAGGTACCTTCTACTGTGATGGTGCCAAATAAATTATGATCTCTGTTCTCAAAGTCAGGATTTGCTAATCCCTGACCTTTGCAAAATCAGATATTTGTATGTAGAAAAACTTTGGCATTTATTTCTACCCCCAAAAGAAAGAAAAAGAAAAGAAAGTGATGGGAAGTACTTAATAATCTCAATGGGCAGTATTTCTCTCTGCTCATCTGAAAGTGATGTCTTTCGTCCCTGTTTATACAATCATCCTCTGTTCATCTTAATCATTGACTCAATGGGCAATACTTCTCTCTGCTCAACTGAAAGCGGCATCTTTCCTCCCTGTTTATAAAATCGTCCTCTGCTCTTCTCTTTGTCATATAGAGGCATGAATTTTGTAGAAACCTCTTCTTTTGACTAGTTATAATGTTTTAGGGACTAATGTATTTCCATTTAAAATCAGATGATGCAATTAGAAAATGCTCCACGTATATGGACATATACTTGCATGTGGTAACATTTTGTGAAATTATATTTGGTGAAAATTGTGGAGCATTGCTATCTCTCTAGTGTCTATGTTCCTTCAAATTAGGTTGAATTTGGAGCAAAGTCCCATTGATATCCAAGAATAGTCCTTGCCCGTTGAACGAATAAACTTTAACATCTATGGCAGACATTTTCCAGGGTGTGTGAGTGTCTTCTGACTTCAATATGTTAAATTAGGTATTGTGTCTGTGCTTCCTATCCTCTTCTTTTCATCTTATTGGGACACTTTAGTGCTCTACCTAGATTGTTGGATTACTAATCTACTGACATTTGAAACTCCGTATGGTACTCTGGTTTTCACTTTTCAGTCTTTCACAGTTCCACTATTTGTAGATCAAACTTGTTGGATCCTTTGCACCTCTTAATTCTACTTAGATTCATAGACTACTAACATACTATCCTACTTGTTCTGCTTATGTTATTGTTATTGCTCATGTTCAGGACAATGCTTTTTGATTGATTAGAACTCATTAAATTTGATTGATTTCCTTCTTAATTTAACCACAAATAAGCCCAAATTGGCCTTATAAGACACTTTGATATATGTATCAACTGAAGATTAAGAGATATTGAAGCCTTGAGGTGCATGAATTAGTAGTGTTCATGTGGTGTACCGGTGCCTTAAGCTCATTATTTTTCTGGGACAGACTATAGAACTCTATTACTTGGCTACTGTCGATGTCTTATACGATTGAGAGTTCTTTCTCTACTATGTTACTGCCCCACCTGCTACATGCTTGTCTCCTACTTATTAAAAAAATGGATATATGGTCATTCCCTCTTCACTTCCCCTCCTTTTGAGCTGTCGATGACCGACTGATTCAATCCATGTTGTCATTTTTGATGTGGTAAAATTCTTTGGAATTCTCTAGCTCAAAAACAAATGATGGCTCAGATATATTCATAAATCGTTTGGTACTTCTCATTGTACTCTTTAGTTACAGGGTTGTTGTTTCCTTTACTGCAGTATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTC</genome_strand>
        <mrna_strand>CTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGCTGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540403" ref_strand="+" ref_description="SGN-E540403 [TUS-60-K14]">
      <seq>ctccaatggcgtctggatggggaattacagggaataaaggacgatgctatgatttctggatggatttcagtgagtgtatgtctcgatgcagggagcccaaggactgtgtacttcttagagaagactacttcgagtgtcttcatcattccaaagagtatcaacgtaggaaccgaatctacaaagaggagcagcgccaattgagagctgcttcacaaaagaaaaaggaaggtgtagatggtggtggtggtggtcatcactgacctttattattcttgatcaatcatggttttatcaactaaaagacattgaagtaaactgtatgtggttttgaattttgaaataaagaattctatcagttgcatttgatgtgagttgcatcattgaaatgactcagttcagtttctttctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="132912" stop="127844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132612" g_stop="132458" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132457" i_stop="128401" i_length="4057">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128400" g_stop="128147" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="409" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E540403" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132612" e_stop="132458"/>
          <exon e_start="128400" e_stop="128147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAGGTACATTTCGATTTTTTTTCCCATTAGATTCCGATCTCTTTGGTATTTTCACCTTTGCTTAACAATCGTCCTTATCCTGAAGATTTAAACAACTCAGCAGTTCCATTAGGCAATTTGTCCTCAGCTGTATTTAGGGTTTTTAGAGATTTGATACTTTATAATCTGAATTGGTTCGAATAAAAGCTTCTCAGATTTGAATTCCCTCAAAGTATGGATTTTTTTTTCATTTTTCATCCAACATCAGATATATGTGTGGAACTGTAGGAGGTGATTTGCACTGTAGTTATTGATGATGGCGTTTATTAATTGACGAAGCAAGCAACTTGTTAATGAGTGGATGGAACTACAGAGAAACAATATGGATTGTAAGGTTTGTAGAAGTAAAATAGTAAACATGCTGAAAAAACTGTAAGTTTTGCTCTCATAAGAAGAACAAAAGTAAAGTGGGATTGGGCGAGATTATATTTCCTAAATGCAAACAATTTAGTTATCTGAGTCTAGTCTTACATGAGAATGACGTGATAGATAGAGATATAGCATATATAATGAAAATAGGATGGTTGAAGTGGAGGAGGTGCTGCATGATTACTATGTGATAGAAAGACACCTAATAAGTCAAAGGAAACTTCTATGGAATGGCTGTGAGAATAGCAATTTATATTATGGTAGTGAATATTGGTCCTCTAAGTTTCATCATATTAATAAAACAAGTAACATAGAAATGTGATGTTAAGATGGATATGCAGTCAGCAAGATGTACAAGATTAGAAACAACACATCAGAAAGATAGTTCAAGTAGCATACAGACATAAAATAAGAAAAGATTGATGAGATCGCTTGGCATGTATAGGGGAGGACCTCCATATATAGTATCCATTTATACTTGTACTGCACTCTTTCTTGGAATACCAAGGAATATAGATATTTGAAAATATTATGATTTTATGTCAAGGAAAATACATCTGATGAATCATACAGGGAAATGGAGAAAGTGGTATTTGTAAGTCAACCTATCGAAAAATTCACCAAATATGCATATGGCTGATGTCTAGTCGCCAAACATCATGGCAGGCTTACCAAGTATGCATGGATATCATTTCAAATAAATGCCTGTTTATCAATCTGGTTCATTATTTCAAACTTGAAAATAGAGAATTCAAAGTTTGAGGAGAGTTTATTGAGTAATATAATGGTTCACTTACAAGTCGTCAACTTTTTTCCAAGTGAATTTCATCTCCAAACACTACTTTAACATCCAAATATCCTTTTTCAATTTCAACTTACTCTTCTTTCCATTTCAAATTTTACCCAAAATTATGTCCAAATGCCAATTGATTCGTACTTGGTCTATATCAGTATAGCTGTTACTTTGAACTAGTTATGGTTCCCTTTAAGCTCTATTTGGGGGAAATTCAAGGTTACTGGCGATGACAAAATTTGGCTCACCAGCATGCCACATTATATATCTGCTAGATCTTTTCATTATTTGGATCATATCAAACACATTATGTGACTAAGCAGCTGAGGAGGACTTAAATTTAAGTAGGTGCTCTGAAGCCTTGTCATGTGATAAGAGATCTATAAATGATATATTTTGCTGATTGAAGGTCGTAAAATAACCCGAGATAGACCTAAATTAGTGGAGGGAAGTCGTCTCAAAAGACCTTTTAAGTTCTTTAGATTACAGATATTTTCTCATTCTTTGTAGCACAGATGTGGATTTCCACCCTTTGTCTATTTTAGAGTTATACCTGGACTTCTCTTCTTTTTTTTTGATAAAAAAGTTATACCTAGACATACCTCTTTGATTCGTCTTATTTAGGGTCTTTCACTCTTATCGAAAATAAAAACAAAAATTTAGGGTCTCTCAAGTGATTTCTTAGAGAAGCCATGAAAGCAAAGGCATTGCTATAAGTAGGAAATGGAAGTAGTCAATTTACAAGGACTGAACTGGAACATCTGTAGTTAAGCACCTTGTGTGCATTGTCTCGTCCTAAATCTGTAGAAAACATTACATCAGCTAATTTTTTATGGAGTCTCAAAAAGAGACGAATCTTGATTTATACAGCTATTTTTTTCCCTGTTATTTGATTTTGGCTCTTTCATTAATTGATCTTCTTGTCACTATCAGCATTACTATCTACTCTTCTGAGAAGCGTTGTTATTTTCTCTTGGAAGTGCCTCAAGCTACAGCCGAGATCTTTCTCATAAGTTGGGGGCTTGTGGTTAGGTGTTTTATGGTCCTGACAAGTTGTATAAACCTCATTACTTGATGTAGAAATTAGATTAGAAATTGGTGACAGGTGAAGTAATAGGAAAGAAGCTTCAATAGCTGTTTGTAGATCTCACCCAGCGAAGTAGCAAACCCTCCTTTCATTTTCCGTGTTGAGAGTACACATTTCAGTTTGTAGCTCATATACTACTTGTATTAATACATGCTTAATTATTCTAATATGTTAATGAGTGAAGTAAATGGTGGAAGCCTTTTCCAAGTTTAGCTACTGCAAGAAATTACCTACATCAAGGAAACTATGTTTTCTTAGACTTAATGGCATTAGTTGAGTGAGAAAGGTACCTTCTACTGTGATGGTGCCAAATAAATTATGATCTCTGTTCTCAAAGTCAGGATTTGCTAATCCCTGACCTTTGCAAAATCAGATATTTGTATGTAGAAAAACTTTGGCATTTATTTCTACCCCCAAAAGAAAGAAAAAGAAAAGAAAGTGATGGGAAGTACTTAATAATCTCAATGGGCAGTATTTCTCTCTGCTCATCTGAAAGTGATGTCTTTCGTCCCTGTTTATACAATCATCCTCTGTTCATCTTAATCATTGACTCAATGGGCAATACTTCTCTCTGCTCAACTGAAAGCGGCATCTTTCCTCCCTGTTTATAAAATCGTCCTCTGCTCTTCTCTTTGTCATATAGAGGCATGAATTTTGTAGAAACCTCTTCTTTTGACTAGTTATAATGTTTTAGGGACTAATGTATTTCCATTTAAAATCAGATGATGCAATTAGAAAATGCTCCACGTATATGGACATATACTTGCATGTGGTAACATTTTGTGAAATTATATTTGGTGAAAATTGTGGAGCATTGCTATCTCTCTAGTGTCTATGTTCCTTCAAATTAGGTTGAATTTGGAGCAAAGTCCCATTGATATCCAAGAATAGTCCTTGCCCGTTGAACGAATAAACTTTAACATCTATGGCAGACATTTTCCAGGGTGTGTGAGTGTCTTCTGACTTCAATATGTTAAATTAGGTATTGTGTCTGTGCTTCCTATCCTCTTCTTTTCATCTTATTGGGACACTTTAGTGCTCTACCTAGATTGTTGGATTACTAATCTACTGACATTTGAAACTCCGTATGGTACTCTGGTTTTCACTTTTCAGTCTTTCACAGTTCCACTATTTGTAGATCAAACTTGTTGGATCCTTTGCACCTCTTAATTCTACTTAGATTCATAGACTACTAACATACTATCCTACTTGTTCTGCTTATGTTATTGTTATTGCTCATGTTCAGGACAATGCTTTTTGATTGATTAGAACTCATTAAATTTGATTGATTTCCTTCTTAATTTAACCACAAATAAGCCCAAATTGGCCTTATAAGACACTTTGATATATGTATCAACTGAAGATTAAGAGATATTGAAGCCTTGAGGTGCATGAATTAGTAGTGTTCATGTGGTGTACCGGTGCCTTAAGCTCATTATTTTTCTGGGACAGACTATAGAACTCTATTACTTGGCTACTGTCGATGTCTTATACGATTGAGAGTTCTTTCTCTACTATGTTACTGCCCCACCTGCTACATGCTTGTCTCCTACTTATTAAAAAAATGGATATATGGTCATTCCCTCTTCACTTCCCCTCCTTTTGAGCTGTCGATGACCGACTGATTCAATCCATGTTGTCATTTTTGATGTGGTAAAATTCTTTGGAATTCTCTAGCTCAAAAACAAATGATGGCTCAGATATATTCATAAATCGTTTGGTACTTCTCATTGTACTCTTTAGTTACAGGGTTGTTGTTTCCTTTACTGCAGTATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTC</genome_strand>
        <mrna_strand>CTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288330" ref_strand="+" ref_description="SGN-E288330 [cLES-16-J14]">
      <seq>tccaatggcgtctggatggggaattacagggaataaaggacgatgctatgatttctggatggatttcagtgagtgtatgtctcgatgcagggagcccaaggactgtgtacttcttagagaagactacttcgagtgtcttcatcattccaaagagtatcaacgtaggaaccgaatctacaaagaggagcagcgccaattgagagctgcttcacaaaagaaaaaggaaggtgtagatggtggtggtggtggtcatcactgacctttattattcttgatcaatcatggttttatcaactaaaagacattgaagtaaactgtatgtggttttgaattttgaaataaagaattctatcagttgcatttgatgtgagttgcatcattgaaatgactcagttcagtttctttctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="132911" stop="127844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132611" g_stop="132458" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132457" i_stop="128401" i_length="4057">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128400" g_stop="128147" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="408" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E288330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132611" e_stop="132458"/>
          <exon e_start="128400" e_stop="128147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAGGTACATTTCGATTTTTTTTCCCATTAGATTCCGATCTCTTTGGTATTTTCACCTTTGCTTAACAATCGTCCTTATCCTGAAGATTTAAACAACTCAGCAGTTCCATTAGGCAATTTGTCCTCAGCTGTATTTAGGGTTTTTAGAGATTTGATACTTTATAATCTGAATTGGTTCGAATAAAAGCTTCTCAGATTTGAATTCCCTCAAAGTATGGATTTTTTTTTCATTTTTCATCCAACATCAGATATATGTGTGGAACTGTAGGAGGTGATTTGCACTGTAGTTATTGATGATGGCGTTTATTAATTGACGAAGCAAGCAACTTGTTAATGAGTGGATGGAACTACAGAGAAACAATATGGATTGTAAGGTTTGTAGAAGTAAAATAGTAAACATGCTGAAAAAACTGTAAGTTTTGCTCTCATAAGAAGAACAAAAGTAAAGTGGGATTGGGCGAGATTATATTTCCTAAATGCAAACAATTTAGTTATCTGAGTCTAGTCTTACATGAGAATGACGTGATAGATAGAGATATAGCATATATAATGAAAATAGGATGGTTGAAGTGGAGGAGGTGCTGCATGATTACTATGTGATAGAAAGACACCTAATAAGTCAAAGGAAACTTCTATGGAATGGCTGTGAGAATAGCAATTTATATTATGGTAGTGAATATTGGTCCTCTAAGTTTCATCATATTAATAAAACAAGTAACATAGAAATGTGATGTTAAGATGGATATGCAGTCAGCAAGATGTACAAGATTAGAAACAACACATCAGAAAGATAGTTCAAGTAGCATACAGACATAAAATAAGAAAAGATTGATGAGATCGCTTGGCATGTATAGGGGAGGACCTCCATATATAGTATCCATTTATACTTGTACTGCACTCTTTCTTGGAATACCAAGGAATATAGATATTTGAAAATATTATGATTTTATGTCAAGGAAAATACATCTGATGAATCATACAGGGAAATGGAGAAAGTGGTATTTGTAAGTCAACCTATCGAAAAATTCACCAAATATGCATATGGCTGATGTCTAGTCGCCAAACATCATGGCAGGCTTACCAAGTATGCATGGATATCATTTCAAATAAATGCCTGTTTATCAATCTGGTTCATTATTTCAAACTTGAAAATAGAGAATTCAAAGTTTGAGGAGAGTTTATTGAGTAATATAATGGTTCACTTACAAGTCGTCAACTTTTTTCCAAGTGAATTTCATCTCCAAACACTACTTTAACATCCAAATATCCTTTTTCAATTTCAACTTACTCTTCTTTCCATTTCAAATTTTACCCAAAATTATGTCCAAATGCCAATTGATTCGTACTTGGTCTATATCAGTATAGCTGTTACTTTGAACTAGTTATGGTTCCCTTTAAGCTCTATTTGGGGGAAATTCAAGGTTACTGGCGATGACAAAATTTGGCTCACCAGCATGCCACATTATATATCTGCTAGATCTTTTCATTATTTGGATCATATCAAACACATTATGTGACTAAGCAGCTGAGGAGGACTTAAATTTAAGTAGGTGCTCTGAAGCCTTGTCATGTGATAAGAGATCTATAAATGATATATTTTGCTGATTGAAGGTCGTAAAATAACCCGAGATAGACCTAAATTAGTGGAGGGAAGTCGTCTCAAAAGACCTTTTAAGTTCTTTAGATTACAGATATTTTCTCATTCTTTGTAGCACAGATGTGGATTTCCACCCTTTGTCTATTTTAGAGTTATACCTGGACTTCTCTTCTTTTTTTTTGATAAAAAAGTTATACCTAGACATACCTCTTTGATTCGTCTTATTTAGGGTCTTTCACTCTTATCGAAAATAAAAACAAAAATTTAGGGTCTCTCAAGTGATTTCTTAGAGAAGCCATGAAAGCAAAGGCATTGCTATAAGTAGGAAATGGAAGTAGTCAATTTACAAGGACTGAACTGGAACATCTGTAGTTAAGCACCTTGTGTGCATTGTCTCGTCCTAAATCTGTAGAAAACATTACATCAGCTAATTTTTTATGGAGTCTCAAAAAGAGACGAATCTTGATTTATACAGCTATTTTTTTCCCTGTTATTTGATTTTGGCTCTTTCATTAATTGATCTTCTTGTCACTATCAGCATTACTATCTACTCTTCTGAGAAGCGTTGTTATTTTCTCTTGGAAGTGCCTCAAGCTACAGCCGAGATCTTTCTCATAAGTTGGGGGCTTGTGGTTAGGTGTTTTATGGTCCTGACAAGTTGTATAAACCTCATTACTTGATGTAGAAATTAGATTAGAAATTGGTGACAGGTGAAGTAATAGGAAAGAAGCTTCAATAGCTGTTTGTAGATCTCACCCAGCGAAGTAGCAAACCCTCCTTTCATTTTCCGTGTTGAGAGTACACATTTCAGTTTGTAGCTCATATACTACTTGTATTAATACATGCTTAATTATTCTAATATGTTAATGAGTGAAGTAAATGGTGGAAGCCTTTTCCAAGTTTAGCTACTGCAAGAAATTACCTACATCAAGGAAACTATGTTTTCTTAGACTTAATGGCATTAGTTGAGTGAGAAAGGTACCTTCTACTGTGATGGTGCCAAATAAATTATGATCTCTGTTCTCAAAGTCAGGATTTGCTAATCCCTGACCTTTGCAAAATCAGATATTTGTATGTAGAAAAACTTTGGCATTTATTTCTACCCCCAAAAGAAAGAAAAAGAAAAGAAAGTGATGGGAAGTACTTAATAATCTCAATGGGCAGTATTTCTCTCTGCTCATCTGAAAGTGATGTCTTTCGTCCCTGTTTATACAATCATCCTCTGTTCATCTTAATCATTGACTCAATGGGCAATACTTCTCTCTGCTCAACTGAAAGCGGCATCTTTCCTCCCTGTTTATAAAATCGTCCTCTGCTCTTCTCTTTGTCATATAGAGGCATGAATTTTGTAGAAACCTCTTCTTTTGACTAGTTATAATGTTTTAGGGACTAATGTATTTCCATTTAAAATCAGATGATGCAATTAGAAAATGCTCCACGTATATGGACATATACTTGCATGTGGTAACATTTTGTGAAATTATATTTGGTGAAAATTGTGGAGCATTGCTATCTCTCTAGTGTCTATGTTCCTTCAAATTAGGTTGAATTTGGAGCAAAGTCCCATTGATATCCAAGAATAGTCCTTGCCCGTTGAACGAATAAACTTTAACATCTATGGCAGACATTTTCCAGGGTGTGTGAGTGTCTTCTGACTTCAATATGTTAAATTAGGTATTGTGTCTGTGCTTCCTATCCTCTTCTTTTCATCTTATTGGGACACTTTAGTGCTCTACCTAGATTGTTGGATTACTAATCTACTGACATTTGAAACTCCGTATGGTACTCTGGTTTTCACTTTTCAGTCTTTCACAGTTCCACTATTTGTAGATCAAACTTGTTGGATCCTTTGCACCTCTTAATTCTACTTAGATTCATAGACTACTAACATACTATCCTACTTGTTCTGCTTATGTTATTGTTATTGCTCATGTTCAGGACAATGCTTTTTGATTGATTAGAACTCATTAAATTTGATTGATTTCCTTCTTAATTTAACCACAAATAAGCCCAAATTGGCCTTATAAGACACTTTGATATATGTATCAACTGAAGATTAAGAGATATTGAAGCCTTGAGGTGCATGAATTAGTAGTGTTCATGTGGTGTACCGGTGCCTTAAGCTCATTATTTTTCTGGGACAGACTATAGAACTCTATTACTTGGCTACTGTCGATGTCTTATACGATTGAGAGTTCTTTCTCTACTATGTTACTGCCCCACCTGCTACATGCTTGTCTCCTACTTATTAAAAAAATGGATATATGGTCATTCCCTCTTCACTTCCCCTCCTTTTGAGCTGTCGATGACCGACTGATTCAATCCATGTTGTCATTTTTGATGTGGTAAAATTCTTTGGAATTCTCTAGCTCAAAAACAAATGATGGCTCAGATATATTCATAAATCGTTTGGTACTTCTCATTGTACTCTTTAGTTACAGGGTTGTTGTTTCCTTTACTGCAGTATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTC</genome_strand>
        <mrna_strand>TCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E692677" ref_strand="+" ref_description="SGN-E692677 [LH_Ea09F11]">
      <seq>tgtttactccaatggcgtctggatggggaattacagggaataaaggacgatgctatgatttctggatggatttcagtgagtgtatgtctcgatgcagggagcccaaggactgtgtacttcttagagaagactacttcgagtgtcttcatcattccaaagagtatcaacgtaggaaccgaatctacaaagaggagcagcgccaattgagagctgcttcacaaaagaaaaaggaaggtgtagatggtggtggtggtggtcatcactgacctttattattcttgatcaatcatggttatatcaaccaaaagacattgaagtaaactgtatgtcgttttgaattttgaaataaagaattatatcagttgcatttgatgtgagttgcatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="132917" stop="127876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132618" g_stop="132458" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132457" i_stop="128401" i_length="4057">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128400" g_stop="128177" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="385" r_length="224" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="420"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E692677" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132618" e_stop="132458"/>
          <exon e_start="128400" e_stop="128177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTACTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAGGTACATTTCGATTTTTTTTCCCATTAGATTCCGATCTCTTTGGTATTTTCACCTTTGCTTAACAATCGTCCTTATCCTGAAGATTTAAACAACTCAGCAGTTCCATTAGGCAATTTGTCCTCAGCTGTATTTAGGGTTTTTAGAGATTTGATACTTTATAATCTGAATTGGTTCGAATAAAAGCTTCTCAGATTTGAATTCCCTCAAAGTATGGATTTTTTTTTCATTTTTCATCCAACATCAGATATATGTGTGGAACTGTAGGAGGTGATTTGCACTGTAGTTATTGATGATGGCGTTTATTAATTGACGAAGCAAGCAACTTGTTAATGAGTGGATGGAACTACAGAGAAACAATATGGATTGTAAGGTTTGTAGAAGTAAAATAGTAAACATGCTGAAAAAACTGTAAGTTTTGCTCTCATAAGAAGAACAAAAGTAAAGTGGGATTGGGCGAGATTATATTTCCTAAATGCAAACAATTTAGTTATCTGAGTCTAGTCTTACATGAGAATGACGTGATAGATAGAGATATAGCATATATAATGAAAATAGGATGGTTGAAGTGGAGGAGGTGCTGCATGATTACTATGTGATAGAAAGACACCTAATAAGTCAAAGGAAACTTCTATGGAATGGCTGTGAGAATAGCAATTTATATTATGGTAGTGAATATTGGTCCTCTAAGTTTCATCATATTAATAAAACAAGTAACATAGAAATGTGATGTTAAGATGGATATGCAGTCAGCAAGATGTACAAGATTAGAAACAACACATCAGAAAGATAGTTCAAGTAGCATACAGACATAAAATAAGAAAAGATTGATGAGATCGCTTGGCATGTATAGGGGAGGACCTCCATATATAGTATCCATTTATACTTGTACTGCACTCTTTCTTGGAATACCAAGGAATATAGATATTTGAAAATATTATGATTTTATGTCAAGGAAAATACATCTGATGAATCATACAGGGAAATGGAGAAAGTGGTATTTGTAAGTCAACCTATCGAAAAATTCACCAAATATGCATATGGCTGATGTCTAGTCGCCAAACATCATGGCAGGCTTACCAAGTATGCATGGATATCATTTCAAATAAATGCCTGTTTATCAATCTGGTTCATTATTTCAAACTTGAAAATAGAGAATTCAAAGTTTGAGGAGAGTTTATTGAGTAATATAATGGTTCACTTACAAGTCGTCAACTTTTTTCCAAGTGAATTTCATCTCCAAACACTACTTTAACATCCAAATATCCTTTTTCAATTTCAACTTACTCTTCTTTCCATTTCAAATTTTACCCAAAATTATGTCCAAATGCCAATTGATTCGTACTTGGTCTATATCAGTATAGCTGTTACTTTGAACTAGTTATGGTTCCCTTTAAGCTCTATTTGGGGGAAATTCAAGGTTACTGGCGATGACAAAATTTGGCTCACCAGCATGCCACATTATATATCTGCTAGATCTTTTCATTATTTGGATCATATCAAACACATTATGTGACTAAGCAGCTGAGGAGGACTTAAATTTAAGTAGGTGCTCTGAAGCCTTGTCATGTGATAAGAGATCTATAAATGATATATTTTGCTGATTGAAGGTCGTAAAATAACCCGAGATAGACCTAAATTAGTGGAGGGAAGTCGTCTCAAAAGACCTTTTAAGTTCTTTAGATTACAGATATTTTCTCATTCTTTGTAGCACAGATGTGGATTTCCACCCTTTGTCTATTTTAGAGTTATACCTGGACTTCTCTTCTTTTTTTTTGATAAAAAAGTTATACCTAGACATACCTCTTTGATTCGTCTTATTTAGGGTCTTTCACTCTTATCGAAAATAAAAACAAAAATTTAGGGTCTCTCAAGTGATTTCTTAGAGAAGCCATGAAAGCAAAGGCATTGCTATAAGTAGGAAATGGAAGTAGTCAATTTACAAGGACTGAACTGGAACATCTGTAGTTAAGCACCTTGTGTGCATTGTCTCGTCCTAAATCTGTAGAAAACATTACATCAGCTAATTTTTTATGGAGTCTCAAAAAGAGACGAATCTTGATTTATACAGCTATTTTTTTCCCTGTTATTTGATTTTGGCTCTTTCATTAATTGATCTTCTTGTCACTATCAGCATTACTATCTACTCTTCTGAGAAGCGTTGTTATTTTCTCTTGGAAGTGCCTCAAGCTACAGCCGAGATCTTTCTCATAAGTTGGGGGCTTGTGGTTAGGTGTTTTATGGTCCTGACAAGTTGTATAAACCTCATTACTTGATGTAGAAATTAGATTAGAAATTGGTGACAGGTGAAGTAATAGGAAAGAAGCTTCAATAGCTGTTTGTAGATCTCACCCAGCGAAGTAGCAAACCCTCCTTTCATTTTCCGTGTTGAGAGTACACATTTCAGTTTGTAGCTCATATACTACTTGTATTAATACATGCTTAATTATTCTAATATGTTAATGAGTGAAGTAAATGGTGGAAGCCTTTTCCAAGTTTAGCTACTGCAAGAAATTACCTACATCAAGGAAACTATGTTTTCTTAGACTTAATGGCATTAGTTGAGTGAGAAAGGTACCTTCTACTGTGATGGTGCCAAATAAATTATGATCTCTGTTCTCAAAGTCAGGATTTGCTAATCCCTGACCTTTGCAAAATCAGATATTTGTATGTAGAAAAACTTTGGCATTTATTTCTACCCCCAAAAGAAAGAAAAAGAAAAGAAAGTGATGGGAAGTACTTAATAATCTCAATGGGCAGTATTTCTCTCTGCTCATCTGAAAGTGATGTCTTTCGTCCCTGTTTATACAATCATCCTCTGTTCATCTTAATCATTGACTCAATGGGCAATACTTCTCTCTGCTCAACTGAAAGCGGCATCTTTCCTCCCTGTTTATAAAATCGTCCTCTGCTCTTCTCTTTGTCATATAGAGGCATGAATTTTGTAGAAACCTCTTCTTTTGACTAGTTATAATGTTTTAGGGACTAATGTATTTCCATTTAAAATCAGATGATGCAATTAGAAAATGCTCCACGTATATGGACATATACTTGCATGTGGTAACATTTTGTGAAATTATATTTGGTGAAAATTGTGGAGCATTGCTATCTCTCTAGTGTCTATGTTCCTTCAAATTAGGTTGAATTTGGAGCAAAGTCCCATTGATATCCAAGAATAGTCCTTGCCCGTTGAACGAATAAACTTTAACATCTATGGCAGACATTTTCCAGGGTGTGTGAGTGTCTTCTGACTTCAATATGTTAAATTAGGTATTGTGTCTGTGCTTCCTATCCTCTTCTTTTCATCTTATTGGGACACTTTAGTGCTCTACCTAGATTGTTGGATTACTAATCTACTGACATTTGAAACTCCGTATGGTACTCTGGTTTTCACTTTTCAGTCTTTCACAGTTCCACTATTTGTAGATCAAACTTGTTGGATCCTTTGCACCTCTTAATTCTACTTAGATTCATAGACTACTAACATACTATCCTACTTGTTCTGCTTATGTTATTGTTATTGCTCATGTTCAGGACAATGCTTTTTGATTGATTAGAACTCATTAAATTTGATTGATTTCCTTCTTAATTTAACCACAAATAAGCCCAAATTGGCCTTATAAGACACTTTGATATATGTATCAACTGAAGATTAAGAGATATTGAAGCCTTGAGGTGCATGAATTAGTAGTGTTCATGTGGTGTACCGGTGCCTTAAGCTCATTATTTTTCTGGGACAGACTATAGAACTCTATTACTTGGCTACTGTCGATGTCTTATACGATTGAGAGTTCTTTCTCTACTATGTTACTGCCCCACCTGCTACATGCTTGTCTCCTACTTATTAAAAAAATGGATATATGGTCATTCCCTCTTCACTTCCCCTCCTTTTGAGCTGTCGATGACCGACTGATTCAATCCATGTTGTCATTTTTGATGTGGTAAAATTCTTTGGAATTCTCTAGCTCAAAAACAAATGATGGCTCAGATATATTCATAAATCGTTTGGTACTTCTCATTGTACTCTTTAGTTACAGGGTTGTTGTTTCCTTTACTGCAGTATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATC</genome_strand>
        <mrna_strand>TGTTTACTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTATATCAACCAAAAGACATTGAAGTAAACTGTATGTCGTTTTGAATTTTGAAATAAAGAATTATATCAGTTGCATTTGATGTGAGTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722708" ref_strand="+" ref_description="SGN-E722708 [FC18AC10]">
      <seq>tggatggggaattacagggaataaaggacgatgctatgatttctggatggatttcagtgagtgtatgtctcgatgcagggagcccaaggactgtgtacttcttaaagaagactacttcgagtgtcttcatcattccaaagagtatcaacgtaggaaccgaatctacaaagaggagcagcgccaattgagagctgcttcacaaaagaaaaaggaaggtgtaaatggtggtggtggtggtcatcactgacctttattattcttgatcaatcatggttttatcaactaaaagacattgaagtaaactgtatgtggttttgaattttgaaataaagaattctatcagttgcttttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="132899" stop="127890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132599" g_stop="132458" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132457" i_stop="128401" i_length="4057">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128400" g_stop="128191" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="352" r_length="210" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="372"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E722708" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132599" e_stop="132458"/>
          <exon e_start="128400" e_stop="128191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAGGTACATTTCGATTTTTTTTCCCATTAGATTCCGATCTCTTTGGTATTTTCACCTTTGCTTAACAATCGTCCTTATCCTGAAGATTTAAACAACTCAGCAGTTCCATTAGGCAATTTGTCCTCAGCTGTATTTAGGGTTTTTAGAGATTTGATACTTTATAATCTGAATTGGTTCGAATAAAAGCTTCTCAGATTTGAATTCCCTCAAAGTATGGATTTTTTTTTCATTTTTCATCCAACATCAGATATATGTGTGGAACTGTAGGAGGTGATTTGCACTGTAGTTATTGATGATGGCGTTTATTAATTGACGAAGCAAGCAACTTGTTAATGAGTGGATGGAACTACAGAGAAACAATATGGATTGTAAGGTTTGTAGAAGTAAAATAGTAAACATGCTGAAAAAACTGTAAGTTTTGCTCTCATAAGAAGAACAAAAGTAAAGTGGGATTGGGCGAGATTATATTTCCTAAATGCAAACAATTTAGTTATCTGAGTCTAGTCTTACATGAGAATGACGTGATAGATAGAGATATAGCATATATAATGAAAATAGGATGGTTGAAGTGGAGGAGGTGCTGCATGATTACTATGTGATAGAAAGACACCTAATAAGTCAAAGGAAACTTCTATGGAATGGCTGTGAGAATAGCAATTTATATTATGGTAGTGAATATTGGTCCTCTAAGTTTCATCATATTAATAAAACAAGTAACATAGAAATGTGATGTTAAGATGGATATGCAGTCAGCAAGATGTACAAGATTAGAAACAACACATCAGAAAGATAGTTCAAGTAGCATACAGACATAAAATAAGAAAAGATTGATGAGATCGCTTGGCATGTATAGGGGAGGACCTCCATATATAGTATCCATTTATACTTGTACTGCACTCTTTCTTGGAATACCAAGGAATATAGATATTTGAAAATATTATGATTTTATGTCAAGGAAAATACATCTGATGAATCATACAGGGAAATGGAGAAAGTGGTATTTGTAAGTCAACCTATCGAAAAATTCACCAAATATGCATATGGCTGATGTCTAGTCGCCAAACATCATGGCAGGCTTACCAAGTATGCATGGATATCATTTCAAATAAATGCCTGTTTATCAATCTGGTTCATTATTTCAAACTTGAAAATAGAGAATTCAAAGTTTGAGGAGAGTTTATTGAGTAATATAATGGTTCACTTACAAGTCGTCAACTTTTTTCCAAGTGAATTTCATCTCCAAACACTACTTTAACATCCAAATATCCTTTTTCAATTTCAACTTACTCTTCTTTCCATTTCAAATTTTACCCAAAATTATGTCCAAATGCCAATTGATTCGTACTTGGTCTATATCAGTATAGCTGTTACTTTGAACTAGTTATGGTTCCCTTTAAGCTCTATTTGGGGGAAATTCAAGGTTACTGGCGATGACAAAATTTGGCTCACCAGCATGCCACATTATATATCTGCTAGATCTTTTCATTATTTGGATCATATCAAACACATTATGTGACTAAGCAGCTGAGGAGGACTTAAATTTAAGTAGGTGCTCTGAAGCCTTGTCATGTGATAAGAGATCTATAAATGATATATTTTGCTGATTGAAGGTCGTAAAATAACCCGAGATAGACCTAAATTAGTGGAGGGAAGTCGTCTCAAAAGACCTTTTAAGTTCTTTAGATTACAGATATTTTCTCATTCTTTGTAGCACAGATGTGGATTTCCACCCTTTGTCTATTTTAGAGTTATACCTGGACTTCTCTTCTTTTTTTTTGATAAAAAAGTTATACCTAGACATACCTCTTTGATTCGTCTTATTTAGGGTCTTTCACTCTTATCGAAAATAAAAACAAAAATTTAGGGTCTCTCAAGTGATTTCTTAGAGAAGCCATGAAAGCAAAGGCATTGCTATAAGTAGGAAATGGAAGTAGTCAATTTACAAGGACTGAACTGGAACATCTGTAGTTAAGCACCTTGTGTGCATTGTCTCGTCCTAAATCTGTAGAAAACATTACATCAGCTAATTTTTTATGGAGTCTCAAAAAGAGACGAATCTTGATTTATACAGCTATTTTTTTCCCTGTTATTTGATTTTGGCTCTTTCATTAATTGATCTTCTTGTCACTATCAGCATTACTATCTACTCTTCTGAGAAGCGTTGTTATTTTCTCTTGGAAGTGCCTCAAGCTACAGCCGAGATCTTTCTCATAAGTTGGGGGCTTGTGGTTAGGTGTTTTATGGTCCTGACAAGTTGTATAAACCTCATTACTTGATGTAGAAATTAGATTAGAAATTGGTGACAGGTGAAGTAATAGGAAAGAAGCTTCAATAGCTGTTTGTAGATCTCACCCAGCGAAGTAGCAAACCCTCCTTTCATTTTCCGTGTTGAGAGTACACATTTCAGTTTGTAGCTCATATACTACTTGTATTAATACATGCTTAATTATTCTAATATGTTAATGAGTGAAGTAAATGGTGGAAGCCTTTTCCAAGTTTAGCTACTGCAAGAAATTACCTACATCAAGGAAACTATGTTTTCTTAGACTTAATGGCATTAGTTGAGTGAGAAAGGTACCTTCTACTGTGATGGTGCCAAATAAATTATGATCTCTGTTCTCAAAGTCAGGATTTGCTAATCCCTGACCTTTGCAAAATCAGATATTTGTATGTAGAAAAACTTTGGCATTTATTTCTACCCCCAAAAGAAAGAAAAAGAAAAGAAAGTGATGGGAAGTACTTAATAATCTCAATGGGCAGTATTTCTCTCTGCTCATCTGAAAGTGATGTCTTTCGTCCCTGTTTATACAATCATCCTCTGTTCATCTTAATCATTGACTCAATGGGCAATACTTCTCTCTGCTCAACTGAAAGCGGCATCTTTCCTCCCTGTTTATAAAATCGTCCTCTGCTCTTCTCTTTGTCATATAGAGGCATGAATTTTGTAGAAACCTCTTCTTTTGACTAGTTATAATGTTTTAGGGACTAATGTATTTCCATTTAAAATCAGATGATGCAATTAGAAAATGCTCCACGTATATGGACATATACTTGCATGTGGTAACATTTTGTGAAATTATATTTGGTGAAAATTGTGGAGCATTGCTATCTCTCTAGTGTCTATGTTCCTTCAAATTAGGTTGAATTTGGAGCAAAGTCCCATTGATATCCAAGAATAGTCCTTGCCCGTTGAACGAATAAACTTTAACATCTATGGCAGACATTTTCCAGGGTGTGTGAGTGTCTTCTGACTTCAATATGTTAAATTAGGTATTGTGTCTGTGCTTCCTATCCTCTTCTTTTCATCTTATTGGGACACTTTAGTGCTCTACCTAGATTGTTGGATTACTAATCTACTGACATTTGAAACTCCGTATGGTACTCTGGTTTTCACTTTTCAGTCTTTCACAGTTCCACTATTTGTAGATCAAACTTGTTGGATCCTTTGCACCTCTTAATTCTACTTAGATTCATAGACTACTAACATACTATCCTACTTGTTCTGCTTATGTTATTGTTATTGCTCATGTTCAGGACAATGCTTTTTGATTGATTAGAACTCATTAAATTTGATTGATTTCCTTCTTAATTTAACCACAAATAAGCCCAAATTGGCCTTATAAGACACTTTGATATATGTATCAACTGAAGATTAAGAGATATTGAAGCCTTGAGGTGCATGAATTAGTAGTGTTCATGTGGTGTACCGGTGCCTTAAGCTCATTATTTTTCTGGGACAGACTATAGAACTCTATTACTTGGCTACTGTCGATGTCTTATACGATTGAGAGTTCTTTCTCTACTATGTTACTGCCCCACCTGCTACATGCTTGTCTCCTACTTATTAAAAAAATGGATATATGGTCATTCCCTCTTCACTTCCCCTCCTTTTGAGCTGTCGATGACCGACTGATTCAATCCATGTTGTCATTTTTGATGTGGTAAAATTCTTTGGAATTCTCTAGCTCAAAAACAAATGATGGCTCAGATATATTCATAAATCGTTTGGTACTTCTCATTGTACTCTTTAGTTACAGGGTTGTTGTTTCCTTTACTGCAGTATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTG</genome_strand>
        <mrna_strand>TGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAAAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAAATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227435" ref_strand="+" ref_description="SGN-E227435 [cLEL-30-P13](-)">
      <seq>gtttgtgttcttggtggcggagagtgaaaatgcattggttaagaggttgattgataggaagactgagactaaagagactttgctagtgagaattgcaacgtctcgagaggaagtgaggcatatgggggagtttgattatgtggtagtgaataaagaaggagagttggagaattctgttaagttaatggagtctattattgatgctgagaaagctaaagtgaggcaaagaacagtgacaatttagagagtctgtttttcagttttttgatctgtttttgattaagttgagctgatactcttaatgttgtcttgtattcaatttatgcaacattgtttttcctaaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="137910" stop="136969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137610" g_stop="137269" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="347" polyA_stop="364"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E227435" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137610" e_stop="137269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTGTTCTTGGTGGCGGAGAGTGAAGATGCATTGGTTAAGAGGTTGATTGATAGGAAGACTGAGACTAAAGAGACTTTGCTAGTGAGAATTGCAACGTCTCGAGAGGAAGTGAGGCATATGGGGGAGTTTGATTATGTGGTAGTGAATAGAGAAGGAGAGTTGGAGAATTCTGTTAAGTTAATGGAGTCTATTATTGATGCTGAGAAAGCTAAAGTGAGGCAAAGAACAGTGACAATTTAGAGAGTCTGTTTTTCAGTTTTTTGATCTGTTTTTGATTAAGTTGAGCTGATACTCTTAATGTTGTCTTGTATTCAATTTATGCAACATTGTTTTTCCTA</genome_strand>
        <mrna_strand>GTTTGTGTTCTTGGTGGCGGAGAGTGAAAATGCATTGGTTAAGAGGTTGATTGATAGGAAGACTGAGACTAAAGAGACTTTGCTAGTGAGAATTGCAACGTCTCGAGAGGAAGTGAGGCATATGGGGGAGTTTGATTATGTGGTAGTGAATAAAGAAGGAGAGTTGGAGAATTCTGTTAAGTTAATGGAGTCTATTATTGATGCTGAGAAAGCTAAAGTGAGGCAAAGAACAGTGACAATTTAGAGAGTCTGTTTTTCAGTTTTTTGATCTGTTTTTGATTAAGTTGAGCTGATACTCTTAATGTTGTCTTGTATTCAATTTATGCAACATTGTTTTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348508" ref_strand="+" ref_description="SGN-E348508 [cTOF-30-D17]">
      <seq>tttctctctacacaaagaatcttgaaaaactgggttcaaaggccaattcgtgtgtcgaaacgttttgtctcatcatttcctgctatggcagaaggaagaagacccactcatgtgcctataccacccccagaaactgctgataaggcggaattgtatcgagcacttgaggctgcggtggggtcgcagtttagttcagagccattggcaccggagcctcatcctttgattattgtggttagtggtccaagtggggttggtaaagatgctgtgattaaaaggcttagagaagttagggagaatattcattttgttgttactgcaacgacaagggggaaaaggccgggtgaggttgatggaaaagattacttttttacgagtaaagaagagtttttgtcaatgattgagagacatgagttgttggagtatgcattggtgtatggggattataagggtataccaaagcaacaaattagggatcatatggctaaaggattggatattgtgttgagagttgatatacaaggtgcagcaacactgaggaggattttgagaaattctgcagtgtttgtgttcttggtggcggagagtgaagatgcattggttaagaggttgattgataggaagactgagactaaagagactttgctagtgagaattgcaacgtctcgaaaggaagtgaggcattggggggaagttgattatgntggtagtgaatagagaaggagagttggagaattctgttaagttaatggagtctattattgatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="138473" stop="137105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138173" g_stop="137405" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E348508" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138173" e_stop="137405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCTACACAAAGAATCTTGAAAAACTGGGTTCAAAGGCCAATTCGTGTGTCGAAACGTTTTGTCTCATCATTTCCTGCTATGGCAGAAGGAAGAAGACCCACTCATGTGCCTATACCACCCCCAGAAACTGCTGATAAGGCGGAATTGTATCGAGCACTTGAGGCTGCGGTGGGGTCGCAGTTTAGTTCAGAGCCATTGGCACCGGAGCCTCATCCTTTGATTATTGTGGTTAGTGGTCCAAGTGGGGTTGGTAAAGATGCTGTGATTAAAAGGCTTAGAGAAGTTAGGGAGAATATTCATTTTGTTGTTACTGCAACGACAAGGGGGAAAAGGCCGGGTGAGGTTGATGGAAAAGATTACTTTTTTACGAGTAAAGAAGAGTTTTTGTCAATGATTGAGAGACATGAGTTGTTGGAGTATGCATTGGTGTATGGGGATTATAAGGGTATACCAAAGCAACAAATTAGGGATCATATGGCTAAAGGATTGGATATTGTGTTGAGAGTTGATATACAAGGTGCAGCAACACTGAGGAGGATTTTGAGAAATTCTGCAGTGTTTGTGTTCTTGGTGGCGGAGAGTGAAGATGCATTGGTTAAGAGGTTGATTGATAGGAAGACTGAGACTAAAGAGACTTTGCTAGTGAGAATTGCAACGTCTCGAGAGGAAGTGAGGCATATGGGGGAGTTTGATTATG-TGGTAGTGAATAGAGAAGGAGAGTTGGAGAATTCTGTTAAGTTAATGGAGTCTATTATTGATGCTG</genome_strand>
        <mrna_strand>TTTCTCTCTACACAAAGAATCTTGAAAAACTGGGTTCAAAGGCCAATTCGTGTGTCGAAACGTTTTGTCTCATCATTTCCTGCTATGGCAGAAGGAAGAAGACCCACTCATGTGCCTATACCACCCCCAGAAACTGCTGATAAGGCGGAATTGTATCGAGCACTTGAGGCTGCGGTGGGGTCGCAGTTTAGTTCAGAGCCATTGGCACCGGAGCCTCATCCTTTGATTATTGTGGTTAGTGGTCCAAGTGGGGTTGGTAAAGATGCTGTGATTAAAAGGCTTAGAGAAGTTAGGGAGAATATTCATTTTGTTGTTACTGCAACGACAAGGGGGAAAAGGCCGGGTGAGGTTGATGGAAAAGATTACTTTTTTACGAGTAAAGAAGAGTTTTTGTCAATGATTGAGAGACATGAGTTGTTGGAGTATGCATTGGTGTATGGGGATTATAAGGGTATACCAAAGCAACAAATTAGGGATCATATGGCTAAAGGATTGGATATTGTGTTGAGAGTTGATATACAAGGTGCAGCAACACTGAGGAGGATTTTGAGAAATTCTGCAGTGTTTGTGTTCTTGGTGGCGGAGAGTGAAGATGCATTGGTTAAGAGGTTGATTGATAGGAAGACTGAGACTAAAGAGACTTTGCTAGTGAGAATTGCAACGTCTCGAAAGGAAGTGAGGCATTGGGGGGAAGTTGATTATGNTGGTAGTGAATAGAGAAGGAGAGTTGGAGAATTCTGTTAAGTTAATGGAGTCTATTATTGATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327317" ref_strand="+" ref_description="SGN-E327317 [cTOC-19-D8]">
      <seq>tttctcctatatcgaaatctcacaaacccttttgctgttttcgaccctaacccacagtttctctctacacaaagaatcttgaaaaactgggttcaaaggccaattcgtgtgtcgaaacgttttgtctcatcatttcctgctatggcagaaggaagaagacccactcatgtgcctataccacccccagaaactgctgataaggcagaattgtatcgagcacttgaggctgcagtggggtcgcagtttaattcagagccattggcaccggagcctcatcctttgattattgtggatagtggtccaagtggggttggtaaagatgctgtgattaaaaggcttagagaagttagggagaatattcattttgttgttactgcaacgacaagggggaaaaggccgggtgaggttgatggaaaagattacttttttacgagtaaagaagagtttttgtcaatgattgagagacatgagttgttggagtatgcattggtgtatggggattataatggtataccaaagcaacaaattagggatcatatggctaaaggattggatattgtgttgagagttgatatacaacgtgcagcaacactgatgacgattttgagaaattctgcagtgtatgtgttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="138530" stop="137298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138230" g_stop="137598" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E327317" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138230" e_stop="137598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTATATCGAAATCTCACAAACCCTTTTGCTGTTTTCGACCCTAACCCACAGTTTCTCTCTACACAAAGAATCTTGAAAAACTGGGTTCAAAGGCCAATTCGTGTGTCGAAACGTTTTGTCTCATCATTTCCTGCTATGGCAGAAGGAAGAAGACCCACTCATGTGCCTATACCACCCCCAGAAACTGCTGATAAGGCGGAATTGTATCGAGCACTTGAGGCTGCGGTGGGGTCGCAGTTTAGTTCAGAGCCATTGGCACCGGAGCCTCATCCTTTGATTATTGTGGTTAGTGGTCCAAGTGGGGTTGGTAAAGATGCTGTGATTAAAAGGCTTAGAGAAGTTAGGGAGAATATTCATTTTGTTGTTACTGCAACGACAAGGGGGAAAAGGCCGGGTGAGGTTGATGGAAAAGATTACTTTTTTACGAGTAAAGAAGAGTTTTTGTCAATGATTGAGAGACATGAGTTGTTGGAGTATGCATTGGTGTATGGGGATTATAAGGGTATACCAAAGCAACAAATTAGGGATCATATGGCTAAAGGATTGGATATTGTGTTGAGAGTTGATATACAAGGTGCAGCAACACTGAGGAGGATTTTGAGAAATTCTGCAGTGTTTGTGTTCTTG</genome_strand>
        <mrna_strand>TTTCTCCTATATCGAAATCTCACAAACCCTTTTGCTGTTTTCGACCCTAACCCACAGTTTCTCTCTACACAAAGAATCTTGAAAAACTGGGTTCAAAGGCCAATTCGTGTGTCGAAACGTTTTGTCTCATCATTTCCTGCTATGGCAGAAGGAAGAAGACCCACTCATGTGCCTATACCACCCCCAGAAACTGCTGATAAGGCAGAATTGTATCGAGCACTTGAGGCTGCAGTGGGGTCGCAGTTTAATTCAGAGCCATTGGCACCGGAGCCTCATCCTTTGATTATTGTGGATAGTGGTCCAAGTGGGGTTGGTAAAGATGCTGTGATTAAAAGGCTTAGAGAAGTTAGGGAGAATATTCATTTTGTTGTTACTGCAACGACAAGGGGGAAAAGGCCGGGTGAGGTTGATGGAAAAGATTACTTTTTTACGAGTAAAGAAGAGTTTTTGTCAATGATTGAGAGACATGAGTTGTTGGAGTATGCATTGGTGTATGGGGATTATAATGGTATACCAAAGCAACAAATTAGGGATCATATGGCTAAAGGATTGGATATTGTGTTGAGAGTTGATATACAACGTGCAGCAACACTGATGACGATTTTGAGAAATTCTGCAGTGTATGTGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315713" ref_strand="+" ref_description="SGN-E315713 [cTOA-26-K1]">
      <seq>cgaaacgaagccaaagcttgcagtataagattgaaatttgggaattgtgaatttggataaaccctagattggaatcgatagattctctatccatttacgtaaaattcaagctcaatttctacagtaacgcccaaattcactgcattttctctctcatcccctataaactcgatgcaatttcgcaggttctacacctctctagcgaattctaaccgcaacccatttctcctatatcgaaatctcacaaacccttttgctgttttcgaccctaacccacagtttctctctacacaaagaatcttgaaaaactgggttcaaaggccaattcgtgtgtcgaaacgttttgtctcatcatttcctgctatggcagaaggaagaagacccactcatgtgcctataccacccccagaaactgctgataaggcggaattgtatcgagcacttgaggctgcggtggggtcgcagtttagttcagagccattggcaccggagcctcatcctttgattattgtggttagtggtccaagtggggttggtaaagatgctgtgattaaaaggcttagagaagttagggagaatattcattttgttgttactgcaacgacaagggggaaaaggccgggtgaggttgatggaaaagatacttttttacgagtaaagaagagtttttgtcaatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="138752" stop="137471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138452" g_stop="137771" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E315713" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138452" e_stop="137771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACGAAGCCAAAGCTTGCAGTATAAGATTGAAATTTGGGAATTGTGAATTTGGATAAACCCTAGATTGGAATCGATAGATTCTCTATCCATTTACGTAAAATTCAAGCTCAATTTCTACAGTAACGCCCAAATTCACTGCATTTTCTCTCTCATCCCCTATAAACTCGATGCAATTTCGCAGGTTCTACACCTCTCTAGCGAATTCTAACCGCAACCCATTTCTCCTATATCGAAATCTCACAAACCCTTTTGCTGTTTTCGACCCTAACCCACAGTTTCTCTCTACACAAAGAATCTTGAAAAACTGGGTTCAAAGGCCAATTCGTGTGTCGAAACGTTTTGTCTCATCATTTCCTGCTATGGCAGAAGGAAGAAGACCCACTCATGTGCCTATACCACCCCCAGAAACTGCTGATAAGGCGGAATTGTATCGAGCACTTGAGGCTGCGGTGGGGTCGCAGTTTAGTTCAGAGCCATTGGCACCGGAGCCTCATCCTTTGATTATTGTGGTTAGTGGTCCAAGTGGGGTTGGTAAAGATGCTGTGATTAAAAGGCTTAGAGAAGTTAGGGAGAATATTCATTTTGTTGTTACTGCAACGACAAGGGGGAAAAGGCCGGGTGAGGTTGATGGAAAAGATTACTTTTTTACGAGTAAAGAAGAGTTTTTGTCAATGATTG</genome_strand>
        <mrna_strand>CGAAACGAAGCCAAAGCTTGCAGTATAAGATTGAAATTTGGGAATTGTGAATTTGGATAAACCCTAGATTGGAATCGATAGATTCTCTATCCATTTACGTAAAATTCAAGCTCAATTTCTACAGTAACGCCCAAATTCACTGCATTTTCTCTCTCATCCCCTATAAACTCGATGCAATTTCGCAGGTTCTACACCTCTCTAGCGAATTCTAACCGCAACCCATTTCTCCTATATCGAAATCTCACAAACCCTTTTGCTGTTTTCGACCCTAACCCACAGTTTCTCTCTACACAAAGAATCTTGAAAAACTGGGTTCAAAGGCCAATTCGTGTGTCGAAACGTTTTGTCTCATCATTTCCTGCTATGGCAGAAGGAAGAAGACCCACTCATGTGCCTATACCACCCCCAGAAACTGCTGATAAGGCGGAATTGTATCGAGCACTTGAGGCTGCGGTGGGGTCGCAGTTTAGTTCAGAGCCATTGGCACCGGAGCCTCATCCTTTGATTATTGTGGTTAGTGGTCCAAGTGGGGTTGGTAAAGATGCTGTGATTAAAAGGCTTAGAGAAGTTAGGGAGAATATTCATTTTGTTGTTACTGCAACGACAAGGGGGAAAAGGCCGGGTGAGGTTGATGGAAAAGA-TACTTTTTTACGAGTAAAGAAGAGTTTTTGTCAATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326621" ref_strand="+" ref_description="SGN-E326621 [cTOC-17-M13]">
      <seq>cgaaacgaagccaaagcttgcagtataagattgaaatttgggaattgtgaatttggataaaccctagattggaatcgatagattctctatccatttacgtaaaattcaagctcaatttctacagtaacgcccaaattcactgcattttctctctcatcccctataaactcgatgcaatttcgcaggttctacacctctctagcgaattctaaccgcaacccatttctcctatatcgaaatctcacaaacccttttgctgttttcgaccctaacccacagtttctctctacacaaagaatcttgaaaaactgggttcaaaggccaattcgtgtgtcgaaacgttttgtctcatcatttcctgctatggcagaaggaagaagacccactcatgtgcctataccacccccagaaactgctgataaggcggaattgtatcgagcacttgaggctgcggtggggtcgcagtttagttcagagccattggcaccggagcctcatcctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="-" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="138752" stop="137648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="138452" g_stop="137948" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="-" ref_id="SGN-E326621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="138452" e_stop="137948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACGAAGCCAAAGCTTGCAGTATAAGATTGAAATTTGGGAATTGTGAATTTGGATAAACCCTAGATTGGAATCGATAGATTCTCTATCCATTTACGTAAAATTCAAGCTCAATTTCTACAGTAACGCCCAAATTCACTGCATTTTCTCTCTCATCCCCTATAAACTCGATGCAATTTCGCAGGTTCTACACCTCTCTAGCGAATTCTAACCGCAACCCATTTCTCCTATATCGAAATCTCACAAACCCTTTTGCTGTTTTCGACCCTAACCCACAGTTTCTCTCTACACAAAGAATCTTGAAAAACTGGGTTCAAAGGCCAATTCGTGTGTCGAAACGTTTTGTCTCATCATTTCCTGCTATGGCAGAAGGAAGAAGACCCACTCATGTGCCTATACCACCCCCAGAAACTGCTGATAAGGCGGAATTGTATCGAGCACTTGAGGCTGCGGTGGGGTCGCAGTTTAGTTCAGAGCCATTGGCACCGGAGCCTCATCCTTTGA</genome_strand>
        <mrna_strand>CGAAACGAAGCCAAAGCTTGCAGTATAAGATTGAAATTTGGGAATTGTGAATTTGGATAAACCCTAGATTGGAATCGATAGATTCTCTATCCATTTACGTAAAATTCAAGCTCAATTTCTACAGTAACGCCCAAATTCACTGCATTTTCTCTCTCATCCCCTATAAACTCGATGCAATTTCGCAGGTTCTACACCTCTCTAGCGAATTCTAACCGCAACCCATTTCTCCTATATCGAAATCTCACAAACCCTTTTGCTGTTTTCGACCCTAACCCACAGTTTCTCTCTACACAAAGAATCTTGAAAAACTGGGTTCAAAGGCCAATTCGTGTGTCGAAACGTTTTGTCTCATCATTTCCTGCTATGGCAGAAGGAAGAAGACCCACTCATGTGCCTATACCACCCCCAGAAACTGCTGATAAGGCGGAATTGTATCGAGCACTTGAGGCTGCGGTGGGGTCGCAGTTTAGTTCAGAGCCATTGGCACCGGAGCCTCATCCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289198" ref_strand="+" ref_description="SGN-E289198 [cLES-18-N16]">
      <seq>tccaagcgagttctttgattatttcaaagttctatgcatccaagggtttctcacatgtcggaagcacgcagagcgtataattcttcttgtcgagatgcttcaggattctggttacccttgtttcaagggtggtccccgaacaattcagaacctaagaaagagatttcatcttagtttaacagaagagcaatgtgtttccttggtactttctttgattagcagtagcttggatgcgtggcgtactcgtcaatatgattattatcagagggtcttaaatgggatattatgaggtcaaagtgagtttatccacaccgaaacgtgattatacatgtgaagagaaaccgatctttaacttgtttgctgagaggggcttggttgggaaagagcaattcactatatgaacgtgttcttctgattctgtcgaggttaaaggattgcttgtcctttgcagtttgcttctctttctgaggaatttgtagttgtacctgcgaatgttgtattgaaatataccaggtgcaagctctcttcaagaagagctttaatttctagtttcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="159007" stop="163477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159307" g_stop="159334" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="159335" i_stop="159415" i_length="81">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="159416" g_stop="159490" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="103" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="159491" i_stop="162643" i_length="3153">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="162644" g_stop="162727" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="187" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="162728" i_stop="162807" i_length="80">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="162808" g_stop="163177" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="557" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E289198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="159307" e_stop="159334"/>
          <exon e_start="159416" e_stop="159490"/>
          <exon e_start="162644" e_stop="162727"/>
          <exon e_start="162808" e_stop="163177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGCGAGTTCTTTGATTATTTCAAAGTAAAATATTGTTTACTATGTATTTTGTATCTAGACTTCTTTTTGTTTTTTTGTGCTTTAAACCTTTTTTCCTGTCTTCAGGTTCTATGCATCCAAGGGTTTCTCACATGTCGGAAGCACGCAGAGCGTATAATTCTTCTTGTCGAGATGCTTCAGGTAGATCCTGATATGTAAAACCTTTGTTTCTGATATATGAATCTCACTTACTAATGGATGGTGGAACGGGGACTGGGGGAATTTTGTAAAAGTAGGAAAGGATTAGAAATGTCCTGTAGTTCTGATGCTGCAAACTTCCCATTTTTCAGTATCTTAGACTTCCATATTTGGTAGGCTAAGCCTTTATCAAGGAAGACTTTTTTCCAACTTTACTCTTTTTGGATCTCGAAAATACCACCAAAGATGCACCTATCAAGAAAAAGAAGTGTCAAAGATGCAGTACAAAATTACGTACTGCTCCTCGATATCCCAAATTAAGTATACTGCTTTGACTTGTCACGGTATCAAGAGATGATCTGAAGATGTTAGTTACTTCTTATTTAAGGGGGTATGTGTTGGGAGCATCACTTTTGTCTTCTTCTGAGGGTGTATGTGCTGGAGAAAGATGGCAAGTTCAACGTGAAATCAGCCTATAAATTACTAGACATTTCAACTGAAACCAAAGATATGTGGCCTTGGAAGATGATCTGGAAAGTGAAGATACCACATAAGGTGGCTTGCTTCACATGGCTTGTTGCAAGACAATGTGTTCCGACTCAGGATAACTTAATGAAAAGAGGAAAGGACTTATGCTCCAGATGTTCTTTTTGTGAATCTGAGACAGAGACAATAAACCATCTTTTTTTGCATTGTAAATGACTGAGAAACTATGGAACTATTTCATTAACATGAGAGGTATCACATGGACCATGCCTAGAAATACTGCATAAGTCCTAGCATGTTGGAATAGAGATGGAAATAGGACACAAGGAGAGATGGAAGATTGTCGCTGCCTGCATCTGGTGGACAATATGGAGTGAGAGAAATCAGAGATGTTTTGAGAACAAGAGCATCCCTTTCCAAAGCATTAAAATGAATTGTTTAGTGACCTTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTGACTTAAAAGCTGGTTTTTGACTTATTTAACTGTTTGGCAATACTCAAAATAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTTTTTTTTAGCTTATAAGCTGTTTTAAGTTGACCATATTTTTATGTTTTTTCCCTTAATATTTTTATACAATCTCCAAATTACCCATAAAACCCTAACATCTCTTTCTTCTATTTTTCCCTTTTCACGTTTGGCATAACAACTTCAGCACTTCTATCCAAACGCATAACTGCTTATTTTAAAAATAAGTTTCAACACTTTCAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCTCTTAGTCTTTTACTTTTGGTGTATCTATTTATTTCCTAGGATCCGGGGGACATCACCCTATTCTTAGATAATTTATGAGGGAGATGCGTGTTTAGATTCTTTTTGGTAAATCCTCTATACTTTTGATGGAATTACCACAGGAGTTCACTATTGGTATACTTATCTGTTTATAATACCAGTTAACTTTCTCAAAAATAAATAAATAAAGATCTTATAACTGTCATAAACAGAATCAAGAAGCTACCATTTGTGTCTCATAAAATTGGCAATAGAGGAGAAACAGTTAAATCTCATATTCATTTTCTATTTTCTACCCATAGAGAATTTATACTGATTGAGTTAATCTATTAGGAGAAGACCAAGGGTTTACAACAAAGAATGTATATCCTTGGGAAAATTGATTGAAATTTACTGGGAAGGAAGAAGGATCTCCATATAGTATTCATTAACTTAGAGAAAGCATATGATGGAGTGCAGAGATGCCTTTTGATGGTGCTTGAAAAGAAAGAAATCCATTCAACTGTAGTATAGGATATGTATGAGGGATTATTCACAAGTGTGACAACAGAGAGAGGAGATTTAGAGGCAGTTCATGTAACTGTTGTTTTAGATGAAGGATCTGCCTAAACTTGTGCTTGTTCAAATGGTTTTGAATGGGCTAACCAATAGTATTTAGGGTGATGTTCATGGCATTCTATTTGCAGAAAAAAGTATGTTCTATATAAACTCTGCAAGTGTACTTACAATTATAAGAAAACGGCGAAGTCATATTTGATGAGATTTTGGTGTCAAAACAGGGAATAATCATATATCTAGATTAGTCATCCAGAAGAAGCTTGTCATAAACAAAATAAGATGGTTGAATTGGGGGAGTGTCATAATAGGCTAAGTGAACTTGATGTCAAACTAAGTGGAAGGCAAGTTGTATGGAACGGTAGAACGGTACTATGAAGTAACCCGAGCATCTAAACCTTTTAAAACTTGTTCAGTACCATTATAAGCTCCATTTAAAACCTTGCACAGCCGGTGACAGACAAGGAATATTTTAAAATCCTGAGTTACCTATTTTTTAAAAAAGGGGATACTTTAAAATCCTCTTGGGTGTGTAACTCGCTTGTGTTTACAAATGGGTTGAGGAGGTTCCCTTTCAGTTCATTTCATCTCATCTTTTTCTTAACCTCTTCTTTATTTTTTTTACTCGTGAAGTATCAGAAAGGAACACAAATTTAATCCAAAGTTAAACAGAATGATCTATCATAAGAGAAAGCAAAATCATCACAAAGAATCTCAGAATCTCTTAAGCATCATACATCCACAAGTGAGATTAATAGTTTGTTTAGCCAAACTTCTAAGAAGCCAGAAGCTTATTATTTAAAAAGTGCTTACTTTAGAGTTGAACAGGCTATATATAGAATGAAAGAAGAAACTCTATGATATATCTTGCATGTCTTAATGAATCTCTAGCTTCTTCCCAATTTTTGTTTCCAGGATTAGTACTGGAAATGATAGTTTGAAAGTTGTTTGTGAAGGTTGGATGAGCGATAGTCTAAGGGCTCTTCTGAGATGAGCTATTTTCTTGTTTACCATCTGGGCACGGTCATGTTGTTTCCCTTGATTGGCATGGGCCATGTTGTTTCCCTGGATTGGCTTACACAACTTGTATTCCTGTTCTCAATCCTATTTAGCTCGACTGTTGTATATGTGATTGAGTTACTAAGCATACTTGTTCTGTCAAACACGTTTTCGTCTTTATTGAATATATACATTGATCTCCTAATAACACAGAATTTGTTTCACTTTGATCTTTATATCAGGATTCTGGTTACCCTTGTTTCAAGGGTGGTCCCCGAACAATTCAGAACCTAAGAAAGAGATTTCATCTTAGTTTAACAGAAGAGGTTTGTTACTGGTCCTGAAATTAATTAATTCCTTATTTTTATCATCTACTTGATCATTATGCTTTGTTTGTCTTTGCCAGCAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTTGCAGTTTGCTTCTCTTTCTGAGGAATTTGTAGTTGTACCTGCGAATGTTGTATTGAAATATACCAGGTGCAAGCTCTCTTCAAGAAGAGCTTTAATTTCTAGTTTCACTC</genome_strand>
        <mrna_strand>TCCAAGCGAGTTCTTTGATTATTTCAAA.................................................................................GTTCTATGCATCCAAGGGTTTCTCACATGTCGGAAGCACGCAGAGCGTATAATTCTTCTTGTCGAGATGCTTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTGGTTACCCTTGTTTCAAGGGTGGTCCCCGAACAATTCAGAACCTAAGAAAGAGATTTCATCTTAGTTTAACAGAAGAG................................................................................CAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTTGCAGTTTGCTTCTCTTTCTGAGGAATTTGTAGTTGTACCTGCGAATGTTGTATTGAAATATACCAGGTGCAAGCTCTCTTCAAGAAGAGCTTTAATTTCTAGTTTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244539" ref_strand="+" ref_description="SGN-E244539 [cLED-38-E12]">
      <seq>ttgtttcatgggtggtccccgaacaattcagaacctaagaaagagatttcatcttagtttaacagaagagcaatgtgtttccttggtactttctttgattagcagtagcttggatgcgtggcgtactcgtcaatatgattattatcagagggtcttaaatgggatattatgaggtcaaagtgagtttatccacaccgaaacgtgattatacatgtgaagagaaaccgatctttaacttgtttgctgagaggggcttggttgggaaagagcaattcactatatgaacgtgttcttctgattctgtcgaggttaaaggattgcttgtcctttgcagattgcttctctttctgaggaatttgtagttgtacctgcgaatgttgtattgaaatataccaggtgcaagctctcttgaagaagagctttaatttctagtttcactcaattttcaagattattggacaaaggcatgggttgtcttcagtgaagagatttgtcgagtacacccacccaccccggggtacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="162358" stop="163564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162658" g_stop="162727" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="162728" i_stop="162807" i_length="80">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="162808" g_stop="163264" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="526" r_length="456" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E244539" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162658" e_stop="162727"/>
          <exon e_start="162808" e_stop="163264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCAAGGGTGGTCCCCGAACAATTCAGAACCTAAGAAAGAGATTTCATCTTAGTTTAACAGAAGAGGTTTGTTACTGGTCCTGAAATTAATTAATTCCTTATTTTTATCATCTACTTGATCATTATGCTTTGTTTGTCTTTGCCAGCAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTTGCAGTTTGCTTCTCTTTCTGAGGAATTTGTAGTTGTACCTGCGAATGTTGTATTGAAATATACCAGGTGCAAGCTCTCTTCAAGAAGAGCTTTAATTTCTAGTTTCACTCAATTTTCAAGATTATTGGACAAAGGCATGGGTTGTCTTCAGTGAAGAGATTTGTCGAGTACACCCACCCACCCCGTGGGTACATACT</genome_strand>
        <mrna_strand>TTGTTTCATGGGTGGTCCCCGAACAATTCAGAACCTAAGAAAGAGATTTCATCTTAGTTTAACAGAAGAG................................................................................CAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTTGCAGATTGCTTCTCTTTCTGAGGAATTTGTAGTTGTACCTGCGAATGTTGTATTGAAATATACCAGGTGCAAGCTCTCTTGAAGAAGAGCTTTAATTTCTAGTTTCACTCAATTTTCAAGATTATTGGACAAAGGCATGGGTTGTCTTCAGTGAAGAGATTTGTCGAGTACACCCACCCACCCCG-GGGTACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244546" ref_strand="+" ref_description="SGN-E244546 [cLED-38-K10]">
      <seq>ttgtttcaagggtggtccccgaacaattcagaacctaagaaagagatttcatcttagtttaacagaagagcaatgtgtttccttggtactttctttgattagcagtagcttggatgcgtggcgtactcgtcaatatgattattatcagagggtcttaaatgggatattatgaggtcaaagtgagtttatccacaccgaaacgtgattatacatgtgaagagaaaccgatctttaacttgtttgctgagaggggcttggttgggaaagagcaattcactatatgaacgtgttcttctgattctgtcgaggttaaaggattgcttgtcctttgcagtttgcttctctttctgaggaatttgtagttgtacctgcgaatgttgtattgaaatataccaggtgcaagctctcttcaagaagagctttaatttctagtttcactcaattttcaagattattggacaaaggcatgggttgtcttcagtgaagagatttgtcnagtacacccacccacccgtgggtacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="162358" stop="163564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162658" g_stop="162727" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="162728" i_stop="162807" i_length="80">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="162808" g_stop="163264" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="526" r_length="456" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E244546" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162658" e_stop="162727"/>
          <exon e_start="162808" e_stop="163264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCAAGGGTGGTCCCCGAACAATTCAGAACCTAAGAAAGAGATTTCATCTTAGTTTAACAGAAGAGGTTTGTTACTGGTCCTGAAATTAATTAATTCCTTATTTTTATCATCTACTTGATCATTATGCTTTGTTTGTCTTTGCCAGCAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTTGCAGTTTGCTTCTCTTTCTGAGGAATTTGTAGTTGTACCTGCGAATGTTGTATTGAAATATACCAGGTGCAAGCTCTCTTCAAGAAGAGCTTTAATTTCTAGTTTCACTCAATTTTCAAGATTATTGGACAAAGGCATGGGTTGTCTTCAGTGAAGAGATTTGTCGAGTACACCCACCCACCCCGTGGGTACATACT</genome_strand>
        <mrna_strand>TTGTTTCAAGGGTGGTCCCCGAACAATTCAGAACCTAAGAAAGAGATTTCATCTTAGTTTAACAGAAGAG................................................................................CAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTTGCAGTTTGCTTCTCTTTCTGAGGAATTTGTAGTTGTACCTGCGAATGTTGTATTGAAATATACCAGGTGCAAGCTCTCTTCAAGAAGAGCTTTAATTTCTAGTTTCACTCAATTTTCAAGATTATTGGACAAAGGCATGGGTTGTCTTCAGTGAAGAGATTTGTCNAGTACACCCACCCA-CCCGTGGGTACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240543" ref_strand="+" ref_description="SGN-E240543 [cLED-21-O17]">
      <seq>agggtggtccccgaacaattcagaacctaagaaagagatttcatcttagtttaacagaagagcaatgtgtttccttggtactttctttgattagcagtagcttggatgcgtggcgtactcgtcaatatgattattatcagagggtcttaaatgggatattatgaggtcaaagtgagtttatccacaccgaaacgtgattatacatgtgaagagaaaccgatctttaacttgtttgctgagaggggcttggttgggaaagagcaattcactatatgaacgtgttcttctgattctgtcgaggttaaaggattgcttgtccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="162366" stop="163367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162666" g_stop="162727" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="162728" i_stop="162807" i_length="80">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="162808" g_stop="163067" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="322" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E240543" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162666" e_stop="162727"/>
          <exon e_start="162808" e_stop="163067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTGGTCCCCGAACAATTCAGAACCTAAGAAAGAGATTTCATCTTAGTTTAACAGAAGAGGTTTGTTACTGGTCCTGAAATTAATTAATTCCTTATTTTTATCATCTACTTGATCATTATGCTTTGTTTGTCTTTGCCAGCAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTT</genome_strand>
        <mrna_strand>AGGGTGGTCCCCGAACAATTCAGAACCTAAGAAAGAGATTTCATCTTAGTTTAACAGAAGAG................................................................................CAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540504" ref_strand="+" ref_description="SGN-E540504 [TUS-60-N2](-)">
      <seq>ttaacagaagagcaatgtgtttccttggtactttctttgattagcagtagcttggatgcgtggcgtactcgtcaatatgattattatcagagggtcttaaatgggatattatgaggtcaaagtgagtttatccacaccgaaacgtgattatacatgtgaagagaaaccgatctttaacttgtttgctgagaggggcttggttgggaaagagcaattcactatatgaacgtgttcttctgattctgtcgaggttaaaggattgcttgtcctttgcagtttgcttctctttctgaggaatttgtagttgtacctgcgaatgttgtattgaaatataccaggtgcaagctctcttcaagaagagctttaatttctagtttcactcaattttcaagattattggacaaaggcatgggttgtcttcagtgaagagatttgtcgagtacacccacccacccgtgggtacatactgtacagagctgtgtaagagattgcaacagtggtggcttgctgccagaacgcgagagacagacagacggctgttggtaccgtttgaattgaatcatgagtttgctggtgcaacatgatatttggtttgtacaatagcttatttgctttgattttgtttttcattttcccttttattgtgtcaaaggcattatttagattagcagtaggaaaattgcagcctgctcttaattttcaagtctttgattctttgtgttcaccaggagattctgaaacagcagagttgtaatgtataatatttttttccaccaaaaaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0054I23-lBj3V/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0054I23.2" temp_strand="+" temp_description="C11HBa0054I23.2  AC212431.2 htgs_phase:3 submitted_to_sgn_as:gi|170933587|gb|AC212431.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence">
        <position start="162506" stop="163875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162716" g_stop="162727" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="162728" i_stop="162807" i_length="80">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.719" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="162808" g_stop="163565" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="769" r_length="757" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="776" polyA_stop="799"/>
      <MATCH_line gen_id="C11HBa0054I23.2" gen_strand="+" ref_id="SGN-E540504" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0054I23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162716" e_stop="162727"/>
          <exon e_start="162808" e_stop="163565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACAGAAGAGGTTTGTTACTGGTCCTGAAATTAATTAATTCCTTATTTTTATCATCTACTTGATCATTATGCTTTGTTTGTCTTTGCCAGCAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTTGCAGTTTGCTTCTCTTTCTGAGGAATTTGTAGTTGTACCTGCGAATGTTGTATTGAAATATACCAGGTGCAAGCTCTCTTCAAGAAGAGCTTTAATTTCTAGTTTCACTCAATTTTCAAGATTATTGGACAAAGGCATGGGTTGTCTTCAGTGAAGAGATTTGTCGAGTACACCCACCCACCCCGTGGGTACATACTGTACAGAGCTGTGTAAGAGATTGCAACAGTGGTGGCTTGCTGCCAGAACGCGAGAGACAGACAGACGGCTGTTGGTACCGTTTGAATTGAATCATGAGTATGCTGGTGCAACATGATATTTGGTTTGTACAATAGCTTATTTGCTTTGATTTTGTTTTTCATTTTCCCTTTTATTGTGTCAAAGGCATTATTTAGATTAGCAGTAGGAAAATTGCAGCCTGCTCTTAATTTTCAAGTCTTTGATTCTTTGTGTTCACCAGGAGATTCTGAAACAGCAGAGTTGTAATGTATAATATTTTTT</genome_strand>
        <mrna_strand>TTAACAGAAGAG................................................................................CAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTTGCAGTTTGCTTCTCTTTCTGAGGAATTTGTAGTTGTACCTGCGAATGTTGTATTGAAATATACCAGGTGCAAGCTCTCTTCAAGAAGAGCTTTAATTTCTAGTTTCACTCAATTTTCAAGATTATTGGACAAAGGCATGGGTTGTCTTCAGTGAAGAGATTTGTCGAGTACACCCACCCA-CCCGTGGGTACATACTGTACAGAGCTGTGTAAGAGATTGCAACAGTGGTGGCTTGCTGCCAGAACGCGAGAGACAGACAGACGGCTGTTGGTACCGTTTGAATTGAATCATGAGTTTGCTGGTGCAACATGATATTTGGTTTGTACAATAGCTTATTTGCTTTGATTTTGTTTTTCATTTTCCCTTTTATTGTGTCAAAGGCATTATTTAGATTAGCAGTAGGAAAATTGCAGCCTGCTCTTAATTTTCAAGTCTTTGATTCTTTGTGTTCACCAGGAGATTCTGAAACAGCAGAGTTGTAATGTATAATATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>58</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7622" PGL_stop="7451"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7622" e_stop="7451"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="7622" e_stop="7451" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7622" stop="7451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395605" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCTGAACTCGCATCATATCGTTTCGATTCTCCACATTGTTATGTAATCCCCTCCCCCTATACCTACCCCGATCGTTTTTTTTTTCTTGAAAAAAATCAATATATAACCTCTTGTACCAAATTGTTGGAAAATTTTGAAACTTGTTATAATATGAGTTATATATTGCTAAA</gDNA_template>
            <first_frame> Y  L  N  S  H  H  I  V  S  I  L  H  I  V  M  *  S  P  P  P  I  P  T  P  I  V  F  F  F  L  K  K  I  N  I  *  P  L  V  P  N  C  W  K  I  L  K  L  V  I  I  *  V  I  Y  C  *  </first_frame>
            <second_frame>  I  *  T  R  I  I  S  F  R  F  S  T  L  L  C  N  P  L  P  L  Y  L  P  R  S  F  F  F  S  *  K  K  S  I  Y  N  L  L  Y  Q  I  V  G  K  F  *  N  L  L  *  Y  E  L  Y  I  A  K </second_frame>
            <third_frame>   S  E  L  A  S  Y  R  F  D  S  P  H  C  Y  V  I  P  S  P  Y  T  Y  P  D  R  F  F  F  L  E  K  N  Q  Y  I  T  S  C  T  K  L  L  E  N  F  E  T  C  Y  N  M  S  Y  I  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0054I23.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9185" PGL_stop="7787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9185" e_stop="8948"/>
            <exon e_start="8383" e_stop="7787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9185" e_stop="8948" e_length="238"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.965">
            <gDNA_intron_boundary i_start="8947" i_stop="8384" i_length="564"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8383" e_stop="7787" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9185" stop="8948"/>
              <exon start="8383" stop="8105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9184" stop="8948"/>
              <exon start="8383" stop="8082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8315" stop="7787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGAAGGAGGATGTGACTATAAGACGGTGCAGGAGGCGGTGAATGCTGCACCGGAGAAGGAGCAAACCCGGAAGTTTGTGATATGGATCAAATCCGGGTTGTATGAGGAGAAGGTTCGGGTCGGGTTGGAGAAGATGAATGTGGTGTTTTTGGGTGATGGAATGGGTAAAACTGTCATTACGGGTTCGTTGAGTGTTGGTCTTGCTGGTGTTACTACTTATGAGACTGCAACTGTTG : GAGTTGTTGGTGATGGATTCATGGCTAGTGGTATCACCTTCCAAAACACAGCCGGTCCGGATGCTCACCAAGCCGTAGCATTCCGATCCGACAGTGATCTTTCCGCTGTAGAAAACTGTGAATTCATTGGCAATCAAGACACCCTATACGCCCACGCTTTGCGCCAATACTACAAGTCCTGCCGTATCCAAGGTAATGTAGACTTCATTTTCGGAAACTCAGCTTCTTTCTTTCAAGACTGTGACATCCTAATAGCACCTCGACAACTCCGTCCTGAAAAGGGAGAGACGAATGCTGTGACTGCTCATGGCAGGATAGACCCTGCACAATCAACTGGTTTCGTCTTCCAAAATTGTTTGATCAATGGAACTGATAAATACATGACCTTGTACTACAACAAACCCAAAGTCCACAAAAATTTTCTGGGAAGACCATGGAAGGAGTATTCTCGGACCGTGTTTCTAGATTGTACTTTAGAGGCTCTTATATCGCCTAACGGATGGTTGCCTTGGAGTGGTGATTTCGCGTTGAAGACTCTATACTACGGAGAATATAGAAATACTGGTGCCGGAGCTAATACAGCAGGACGAGTGTCGT</gDNA_template>
            <first_frame> K  E  G  G  C  D  Y  K  T  V  Q  E  A  V  N  A  A  P  E  K  E  Q  T  R  K  F  V  I  W  I  K  S  G  L  Y  E  E  K  V  R  V  G  L  E  K  M  N  V  V  F  L  G  D  G  M  G  K  T  V  I  T  G  S  L  S  V  G  L  A  G  V  T  T  Y  E  T  A  T  V   : G  V  V  G  D  G  F  M  A  S  G  I  T  F  Q  N  T  A  G  P  D  A  H  Q  A  V  A  F  R  S  D  S  D  L  S  A  V  E  N  C  E  F  I  G  N  Q  D  T  L  Y  A  H  A  L  R  Q  Y  Y  K  S  C  R  I  Q  G  N  V  D  F  I  F  G  N  S  A  S  F  F  Q  D  C  D  I  L  I  A  P  R  Q  L  R  P  E  K  G  E  T  N  A  V  T  A  H  G  R  I  D  P  A  Q  S  T  G  F  V  F  Q  N  C  L  I  N  G  T  D  K  Y  M  T  L  Y  Y  N  K  P  K  V  H  K  N  F  L  G  R  P  W  K  E  Y  S  R  T  V  F  L  D  C  T  L  E  A  L  I  S  P  N  G  W  L  P  W  S  G  D  F  A  L  K  T  L  Y  Y  G  E  Y  R  N  T  G  A  G  A  N  T  A  G  R  V  S  </first_frame>
            <second_frame>  R  K  E  D  V  T  I  R  R  C  R  R  R  *  M  L  H  R  R  R  S  K  P  G  S  L  *  Y  G  S  N  P  G  C  M  R  R  R  F  G  S  G  W  R  R  *  M  W  C  F  W  V  M  E  W  V  K  L  S  L  R  V  R  *  V  L  V  L  L  V  L  L  L  M  R  L  Q  L  L  :  E  L  L  V  M  D  S  W  L  V  V  S  P  S  K  T  Q  P  V  R  M  L  T  K  P  *  H  S  D  P  T  V  I  F  P  L  *  K  T  V  N  S  L  A  I  K  T  P  Y  T  P  T  L  C  A  N  T  T  S  P  A  V  S  K  V  M  *  T  S  F  S  E  T  Q  L  L  S  F  K  T  V  T  S  *  *  H  L  D  N  S  V  L  K  R  E  R  R  M  L  *  L  L  M  A  G  *  T  L  H  N  Q  L  V  S  S  S  K  I  V  *  S  M  E  L  I  N  T  *  P  C  T  T  T  N  P  K  S  T  K  I  F  W  E  D  H  G  R  S  I  L  G  P  C  F  *  I  V  L  *  R  L  L  Y  R  L  T  D  G  C  L  G  V  V  I  S  R  *  R  L  Y  T  T  E  N  I  E  I  L  V  P  E  L  I  Q  Q  D  E  C  R </second_frame>
            <third_frame>   G  R  R  M  *  L  *  D  G  A  G  G  G  E  C  C  T  G  E  G  A  N  P  E  V  C  D  M  D  Q  I  R  V  V  *  G  E  G  S  G  R  V  G  E  D  E  C  G  V  F  G  *  W  N  G  *  N  C  H  Y  G  F  V  E  C  W  S  C  W  C  Y  Y  L  *  D  C  N  C  W :   S  C  W  *  W  I  H  G  *  W  Y  H  L  P  K  H  S  R  S  G  C  S  P  S  R  S  I  P  I  R  Q  *  S  F  R  C  R  K  L  *  I  H  W  Q  S  R  H  P  I  R  P  R  F  A  P  I  L  Q  V  L  P  Y  P  R  *  C  R  L  H  F  R  K  L  S  F  F  L  S  R  L  *  H  P  N  S  T  S  T  T  P  S  *  K  G  R  D  E  C  C  D  C  S  W  Q  D  R  P  C  T  I  N  W  F  R  L  P  K  L  F  D  Q  W  N  *  *  I  H  D  L  V  L  Q  Q  T  Q  S  P  Q  K  F  S  G  K  T  M  E  G  V  F  S  D  R  V  S  R  L  Y  F  R  G  S  Y  I  A  *  R  M  V  A  L  E  W  *  F  R  V  E  D  S  I  L  R  R  I  *  K  Y  W  C  R  S  *  Y  S  R  T  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9185" stop="8948"/>
                    <exon start="8383" stop="7788"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEGGCDYKTVQEAVNAAPEKEQTRKFVIWIKSGLYEEKVRVGLEKMNVVFLGDGMGKTVITGSLSVGLAGVTTYETATVGVVGDGFMASGITFQNTAGPDAHQAVAFRSDSDLSAVENCEFIGNQDTLYAHALRQYYKSCRIQGNVDFIFGNSASFFQDCDILIAPRQLRPEKGETNAVTAHGRIDPAQSTGFVFQNCLINGTDKYMTLYYNKPKVHKNFLGRPWKEYSRTVFLDCTLEALISPNGWLPWSGDFALKTLYYGEYRNTGAGANTAGRVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="9919" PGL_stop="9237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9919" e_stop="9237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9919" e_stop="9237" e_length="683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9919" stop="9237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317306" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTCCGAAAATTTAAGCTTCTGTTCATTTCCATGGCTTCCTTTTTCACACTCACTATCTTCTCCTTAATCCTCTTCTTCTCTATTTCCTCCGCCGCTCGCCACCATTCCTCCACATCCCCGTCAATTTCACTTCAGATCCGTGGTGCTTGTAAGGCTTCACGGGACCCACCAACATGTGAATCTGTATTGACGGATTCCGGTTACTTACCGTCTGAGCTAACGACGTCGTTGATCATCCAATCGGCTGTTAAAGTATCATCGAAGAACAACGATAAGGCGAAAGAGATGGTGCAGGCAATTATAGATGCGTCGACAGGGAATAATCAGAACCGTACGGACGCTGGGAAAGTGTGTATGGAGGTGCTCGGGTATGCGGAGTATCGGGTCGGGTTAACGGGTCAGGCAGTGATTAACGGCGGATACAAGAGCGCTCGTGCATGGATGAGCTCCGTTATGGTGTATCAATACGACTGCTGGTCCGCTTTGAAGTACGTTAATGGCACCTCCCAGGTATCTAAAACGATGTCGTTTATCAATTCCTTGATCGGATACAGCAGCAATGCATTGGGGATGATGGTGAATTTCGACCTTTACGGTGCTGATACCGGGTCATGGACCGTACCCAAAACAGAACGAGACGGGTTCTGGGAAGGTTCGGGTTCGGGTTCAAGCGGGTCGGGT</gDNA_template>
            <first_frame> Y  S  E  N  L  S  F  C  S  F  P  W  L  P  F  S  H  S  L  S  S  P  *  S  S  S  S  L  F  P  P  P  L  A  T  I  P  P  H  P  R  Q  F  H  F  R  S  V  V  L  V  R  L  H  G  T  H  Q  H  V  N  L  Y  *  R  I  P  V  T  Y  R  L  S  *  R  R  R  *  S  S  N  R  L  L  K  Y  H  R  R  T  T  I  R  R  K  R  W  C  R  Q  L  *  M  R  R  Q  G  I  I  R  T  V  R  T  L  G  K  C  V  W  R  C  S  G  M  R  S  I  G  S  G  *  R  V  R  Q  *  L  T  A  D  T  R  A  L  V  H  G  *  A  P  L  W  C  I  N  T  T  A  G  P  L  *  S  T  L  M  A  P  P  R  Y  L  K  R  C  R  L  S  I  P  *  S  D  T  A  A  M  H  W  G  *  W  *  I  S  T  F  T  V  L  I  P  G  H  G  P  Y  P  K  Q  N  E  T  G  S  G  K  V  R  V  R  V  Q  A  G  R   </first_frame>
            <second_frame>  I  P  K  I  *  A  S  V  H  F  H  G  F  L  F  H  T  H  Y  L  L  L  N  P  L  L  L  Y  F  L  R  R  S  P  P  F  L  H  I  P  V  N  F  T  S  D  P  W  C  L  *  G  F  T  G  P  T  N  M  *  I  C  I  D  G  F  R  L  L  T  V  *  A  N  D  V  V  D  H  P  I  G  C  *  S  I  I  E  E  Q  R  *  G  E  R  D  G  A  G  N  Y  R  C  V  D  R  E  *  S  E  P  Y  G  R  W  E  S  V  Y  G  G  A  R  V  C  G  V  S  G  R  V  N  G  S  G  S  D  *  R  R  I  Q  E  R  S  C  M  D  E  L  R  Y  G  V  S  I  R  L  L  V  R  F  E  V  R  *  W  H  L  P  G  I  *  N  D  V  V  Y  Q  F  L  D  R  I  Q  Q  Q  C  I  G  D  D  G  E  F  R  P  L  R  C  *  Y  R  V  M  D  R  T  Q  N  R  T  R  R  V  L  G  R  F  G  F  G  F  K  R  V  G  </second_frame>
            <third_frame>   F  R  K  F  K  L  L  F  I  S  M  A  S  F  F  T  L  T  I  F  S  L  I  L  F  F  S  I  S  S  A  A  R  H  H  S  S  T  S  P  S  I  S  L  Q  I  R  G  A  C  K  A  S  R  D  P  P  T  C  E  S  V  L  T  D  S  G  Y  L  P  S  E  L  T  T  S  L  I  I  Q  S  A  V  K  V  S  S  K  N  N  D  K  A  K  E  M  V  Q  A  I  I  D  A  S  T  G  N  N  Q  N  R  T  D  A  G  K  V  C  M  E  V  L  G  Y  A  E  Y  R  V  G  L  T  G  Q  A  V  I  N  G  G  Y  K  S  A  R  A  W  M  S  S  V  M  V  Y  Q  Y  D  C  W  S  A  L  K  Y  V  N  G  T  S  Q  V  S  K  T  M  S  F  I  N  S  L  I  G  Y  S  S  N  A  L  G  M  M  V  N  F  D  L  Y  G  A  D  T  G  S  W  T  V  P  K  T  E  R  D  G  F  W  E  G  S  G  S  G  S  S  G  S  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9917" stop="9237"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRKFKLLFISMASFFTLTIFSLILFFSISSAARHHSSTSPSISLQIRGACKASRDPPTCESVLTDSGYLPSELTTSLIIQSAVKVSSKNNDKAKEMVQAIIDASTGNNQNRTDAGKVCMEVLGYAEYRVGLTGQAVINGGYKSARAWMSSVMVYQYDCWSALKYVNGTSQVSKTMSFINSLIGYSSNALGMMVNFDLYGADTGSWTVPKTERDGFWEGSGSGSSGSG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="40296" PGL_stop="40696"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40296" e_stop="40696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40296" e_stop="40696" e_length="401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40296" stop="40696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATTTGGCCTAGTTTTCCTCTTCAAAACCCTCAACACCATCACCTTCCCTCCTCCTCAACCCAACAACAACAACAACAACAAGAAGAAGTAGTAGTTGTCCCTTTTGATCATGTGTTAAACAACCATGTTCAAACCCTAATAGAGGATCAAGAACACGATGATCAAGACGAAGATGAAGAGGAAGAAGAAGAGCTAGGAGCCATGAAAGAAATGATGTTCAAAATTGCATCTATGCAACCAGTAGACATTGATCCATCCACTATACGAAAACCTAAAAGGCGTAACGTACGTATAAGCAATGATCCACAAAGCGTAGCAGCCAGGCTACGCCGCGAAAGGATAAGTGAAAAAATCAGAATCTTGCAAAGATTAGTCCCTGGTGGAACAAAAATGGACACT</gDNA_template>
            <first_frame> L  F  G  L  V  F  L  F  K  T  L  N  T  I  T  F  P  P  P  Q  P  N  N  N  N  N  N  K  K  K  *  *  L  S  L  L  I  M  C  *  T  T  M  F  K  P  *  *  R  I  K  N  T  M  I  K  T  K  M  K  R  K  K  K  S  *  E  P  *  K  K  *  C  S  K  L  H  L  C  N  Q  *  T  L  I  H  P  L  Y  E  N  L  K  G  V  T  Y  V  *  A  M  I  H  K  A  *  Q  P  G  Y  A  A  K  G  *  V  K  K  S  E  S  C  K  D  *  S  L  V  E  Q  K  W  T   </first_frame>
            <second_frame>  Y  L  A  *  F  S  S  S  K  P  S  T  P  S  P  S  L  L  L  N  P  T  T  T  T  T  T  R  R  S  S  S  C  P  F  *  S  C  V  K  Q  P  C  S  N  P  N  R  G  S  R  T  R  *  S  R  R  R  *  R  G  R  R  R  A  R  S  H  E  R  N  D  V  Q  N  C  I  Y  A  T  S  R  H  *  S  I  H  Y  T  K  T  *  K  A  *  R  T  Y  K  Q  *  S  T  K  R  S  S  Q  A  T  P  R  K  D  K  *  K  N  Q  N  L  A  K  I  S  P  W  W  N  K  N  G  H  </second_frame>
            <third_frame>   I  W  P  S  F  P  L  Q  N  P  Q  H  H  H  L  P  S  S  S  T  Q  Q  Q  Q  Q  Q  Q  E  E  V  V  V  V  P  F  D  H  V  L  N  N  H  V  Q  T  L  I  E  D  Q  E  H  D  D  Q  D  E  D  E  E  E  E  E  E  L  G  A  M  K  E  M  M  F  K  I  A  S  M  Q  P  V  D  I  D  P  S  T  I  R  K  P  K  R  R  N  V  R  I  S  N  D  P  Q  S  V  A  A  R  L  R  R  E  R  I  S  E  K  I  R  I  L  Q  R  L  V  P  G  G  T  K  M  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40298" stop="40696"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWPSFPLQNPQHHHLPSSSTQQQQQQQEEVVVVPFDHVLNNHVQTLIEDQEHDDQDEDEEEEEELGAMKEMMFKIASMQPVDIDPSTIRKPKRRNVRISNDPQSVAARLRRERISEKIRILQRLVPGGTKMDT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="56435" PGL_stop="52368"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56435" e_stop="56216"/>
            <exon e_start="54876" e_stop="54765"/>
            <exon e_start="53680" e_stop="53654"/>
            <exon e_start="53573" e_stop="53501"/>
            <exon e_start="52729" e_stop="52626"/>
            <exon e_start="52541" e_stop="52368"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="0.973"/>
          <exon-intron don_prob="0.952" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.882" e_score="1.000"/>
          <exon-intron don_prob="0.757" acc_prob="0.486" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.230" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="56435" e_stop="56216" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56215" i_stop="54877" i_length="1339"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54876" e_stop="54765" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.995">
            <gDNA_intron_boundary i_start="54764" i_stop="53681" i_length="1084"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53680" e_stop="53654" e_length="27"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.882">
            <gDNA_intron_boundary i_start="53653" i_stop="53574" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53573" e_stop="53501" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.757" acc_prob="0.486">
            <gDNA_intron_boundary i_start="53500" i_stop="52730" i_length="771"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52729" e_stop="52626" e_length="104"/>
          </exon>
          <intron i_serial="5" don_prob="0.932" acc_prob="0.230">
            <gDNA_intron_boundary i_start="52625" i_stop="52542" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52541" e_stop="52368" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56435" stop="56216"/>
              <exon start="54876" stop="54765"/>
              <exon start="53680" stop="53654"/>
              <exon start="53573" stop="53501"/>
              <exon start="52729" stop="52626"/>
              <exon start="52541" stop="52482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56379" stop="56216"/>
              <exon start="54876" stop="54765"/>
              <exon start="53680" stop="53654"/>
              <exon start="53573" stop="53523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56354" stop="56216"/>
              <exon start="54876" stop="54765"/>
              <exon start="53680" stop="53654"/>
              <exon start="53573" stop="53501"/>
              <exon start="52729" stop="52626"/>
              <exon start="52541" stop="52368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312321" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACAAAATCACCATTTCTCTAAACCCTATTTTCTTCTTCTTCTCTTGCATTTTTCCAAAATCTCAAAAATTAGTAAGAAGAGAGATCAGGAAGCAACAAATAAGGATGAAGGGTGGTACAGTTCAGATCAATTGGCACGACAGTAAGCCAGTTTTGTGCCTTGATTTTCACCACCTCACCGGCGTTATTGCTACTGGTGGCGCCGACTATGATATCAAG : ATGTGGGTGATTGATTCTGAAGAAAATGAAAAGAAAGCGCCTTCAGTTACATACCAGGCTAGCCTTTCTTACCATAGTGGTGCTGTGAATGCTCTTCGGTTCTCCCCTTCAG : GAGAGCATTTGGCCTCTGGTGCCGATG : GCGGCGAGCTCATCATTTGGAAGCTACATTCTTCAGATGACAGCAAAACATGGAAAGTCCTAAAGACGTTATC : ATTTCACCGGAAGGATGTATTGGACTTGCAGTGGTCTGCTGATGGTTCTTTTTTAATTTCTGGTTCTGTTGATAATTCATGCATCGTATGGGATGTCAACAAAG : GTTCTGTTCATCAGATTTTGGATGCTCATTTGCACTATGTGCAAGGTGTGGCATGGGATCCATTGTCCAAGTATACTGCCTCACTCAGTTCAGATAGATCTTGCCGGATTTACAGCAATAGACCATCTAAAACAAAAGGAGTTGAGAAGTTGAATTTTGTGTGTCAACATGTCA</gDNA_template>
            <first_frame> Q  Q  N  H  H  F  S  K  P  Y  F  L  L  L  L  L  H  F  S  K  I  S  K  I  S  K  K  R  D  Q  E  A  T  N  K  D  E  G  W  Y  S  S  D  Q  L  A  R  Q  *  A  S  F  V  P  *  F  S  P  P  H  R  R  Y  C  Y  W  W  R  R  L  *  Y  Q   : D  V  G  D  *  F  *  R  K  *  K  E  S  A  F  S  Y  I  P  G  *  P  F  L  P  *  W  C  C  E  C  S  S  V  L  P  F  R :   R  A  F  G  L  W  C  R  W :   R  R  A  H  H  L  E  A  T  F  F  R  *  Q  Q  N  M  E  S  P  K  D  V  I  :  I  S  P  E  G  C  I  G  L  A  V  V  C  *  W  F  F  F  N  F  W  F  C  *  *  F  M  H  R  M  G  C  Q  Q  R :   F  C  S  S  D  F  G  C  S  F  A  L  C  A  R  C  G  M  G  S  I  V  Q  V  Y  C  L  T  Q  F  R  *  I  L  P  D  L  Q  Q  *  T  I  *  N  K  R  S  *  E  V  E  F  C  V  S  T  C   </first_frame>
            <second_frame>  N  K  I  T  I  S  L  N  P  I  F  F  F  F  S  C  I  F  P  K  S  Q  K  L  V  R  R  E  I  R  K  Q  Q  I  R  M  K  G  G  T  V  Q  I  N  W  H  D  S  K  P  V  L  C  L  D  F  H  H  L  T  G  V  I  A  T  G  G  A  D  Y  D  I  K  :  M  W  V  I  D  S  E  E  N  E  K  K  A  P  S  V  T  Y  Q  A  S  L  S  Y  H  S  G  A  V  N  A  L  R  F  S  P  S   : G  E  H  L  A  S  G  A  D   : G  G  E  L  I  I  W  K  L  H  S  S  D  D  S  K  T  W  K  V  L  K  T  L  S :   F  H  R  K  D  V  L  D  L  Q  W  S  A  D  G  S  F  L  I  S  G  S  V  D  N  S  C  I  V  W  D  V  N  K   : G  S  V  H  Q  I  L  D  A  H  L  H  Y  V  Q  G  V  A  W  D  P  L  S  K  Y  T  A  S  L  S  S  D  R  S  C  R  I  Y  S  N  R  P  S  K  T  K  G  V  E  K  L  N  F  V  C  Q  H  V  </second_frame>
            <third_frame>   T  K  S  P  F  L  *  T  L  F  S  S  S  S  L  A  F  F  Q  N  L  K  N  *  *  E  E  R  S  G  S  N  K  *  G  *  R  V  V  Q  F  R  S  I  G  T  T  V  S  Q  F  C  A  L  I  F  T  T  S  P  A  L  L  L  L  V  A  P  T  M  I  S  R :   C  G  *  L  I  L  K  K  M  K  R  K  R  L  Q  L  H  T  R  L  A  F  L  T  I  V  V  L  *  M  L  F  G  S  P  L  Q  :  E  S  I  W  P  L  V  P  M  :  A  A  S  S  S  F  G  S  Y  I  L  Q  M  T  A  K  H  G  K  S  *  R  R  Y   : H  F  T  G  R  M  Y  W  T  C  S  G  L  L  M  V  L  F  *  F  L  V  L  L  I  I  H  A  S  Y  G  M  S  T  K  :  V  L  F  I  R  F  W  M  L  I  C  T  M  C  K  V  W  H  G  I  H  C  P  S  I  L  P  H  S  V  Q  I  D  L  A  G  F  T  A  I  D  H  L  K  Q  K  E  L  R  S  *  I  L  C  V  N  M  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56434" stop="56216"/>
                    <exon start="54876" stop="54765"/>
                    <exon start="53680" stop="53654"/>
                    <exon start="53573" stop="53501"/>
                    <exon start="52729" stop="52626"/>
                    <exon start="52541" stop="52369"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKITISLNPIFFFFSCIFPKSQKLVRREIRKQQIRMKGGTVQINWHDSKPVLCLDFHHLTGVIATGGADYDIKMWVIDSEENEKKAPSVTYQASLSYHSGAVNALRFSPSGEHLASGADGGELIIWKLHSSDDSKTWKVLKTLSFHRKDVLDLQWSADGSFLISGSVDNSCIVWDVNKGSVHQILDAHLHYVQGVAWDPLSKYTASLSSDRSCRIYSNRPSKTKGVEKLNFVCQHV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="62532" PGL_stop="56802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62532" e_stop="62424"/>
            <exon e_start="59981" e_stop="59893"/>
            <exon e_start="59235" e_stop="58999"/>
            <exon e_start="58917" e_stop="58813"/>
            <exon e_start="57831" e_stop="56802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.550" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62532" e_stop="62424" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62423" i_stop="59982" i_length="2442"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59981" e_stop="59893" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.550">
            <gDNA_intron_boundary i_start="59892" i_stop="59236" i_length="657"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59235" e_stop="58999" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.980">
            <gDNA_intron_boundary i_start="58998" i_stop="58918" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58917" e_stop="58813" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58812" i_stop="57832" i_length="981"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="57831" e_stop="56802" e_length="1030"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62532" stop="62424"/>
              <exon start="59981" stop="59893"/>
              <exon start="59235" stop="59034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62525" stop="62424"/>
              <exon start="59981" stop="59893"/>
              <exon start="59235" stop="58999"/>
              <exon start="58917" stop="58813"/>
              <exon start="57831" stop="57489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62483" stop="62424"/>
              <exon start="59981" stop="59893"/>
              <exon start="59235" stop="58999"/>
              <exon start="58917" stop="58834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62478" stop="62424"/>
              <exon start="59981" stop="59893"/>
              <exon start="59235" stop="58999"/>
              <exon start="58917" stop="58813"/>
              <exon start="57831" stop="57617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62475" stop="62424"/>
              <exon start="59981" stop="59893"/>
              <exon start="59235" stop="58999"/>
              <exon start="58917" stop="58895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62468" stop="62424"/>
              <exon start="59981" stop="59893"/>
              <exon start="59235" stop="58999"/>
              <exon start="58917" stop="58835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57639" stop="56817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57638" stop="57117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57533" stop="56802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57420" stop="56815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537713" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTTTACTTTACCCAAGCGTTACTTGTAATACGAAAGAAACAAAACCCTACACCAGAAACATCTTTTATCAGTTCTTGGTCGATAGATGCATCTTCTTGATTAATCAG : AATACATTATTTCCTGTGGGATCTTGCTGTCATTGTTCTGTTACTGTAATCAGACTCATGAAGGTGTGGCATCAGCACTTGACGTGAAG : GATTACTTTCATGATCTGCAGCCTCTCCATCTACTACTTCAGTGACTATAGAAATGAAGCCAAGAACCAACGGGGTGTCAAGGTCCCAGAAGTCCAATGGTGTTCAGAGTGAGGGTCCTAACTGGGTCATAATTGCAGGTAGTGCGTTATTAAGTACATTATCTGTACGCTTAGGGTACAAGCTGAAGCAGGTGCTTGATTCAAGACAGCCAAACAAGACGACCAGCAGTTTGAAAG : GAAATGAAAAGTCTTCTGATGGAAGTAAGTTAGGGAATGGTCATATGCAGTCAAGCACTTACTATTTTTCCCAAGATGATGATGGCTGCTACAATTGCAACACGG : AAGCTGGAGGATTAGGAATTACAAAGCAGCAGTATAATGGGTCTGAGCCTGAAATGGTGCTCCCTCTGGTGGCAGTTCCTGCCATCGGATTCAATAAAGAGAATGGTGGGGTTTGGTCAACCTCTCCTGACCGTCTTGAACTACCACAGAAACCATTTCATCGCTCTAACAGCTCTGAGTCACCATGTGTCTCTGAATCCGGTTCTGACATATACAGCAAGCGAGAAGTGATACAAAAGCTGAGGCTACAGTTAAAGAGAAGGGACGAAACAATATTAGAGATGCAAGAACAGATTGTAGAGTTGCAAGCTTCTCTCAATGCTCAGATGTCGCATTCTGCTCATCAGCAGTCATTGCTGGATGCTGCCAACAGGGATCTGTTTGATTCGGAGAGAGAGATACAGAGGCTGAGGAAGGCTATTGCAGATCATTGTGTTGGACAAGTAGGTTCGTGCGATAAGCCCCCAACAGTACCTGTATGGCCAGCTGAAGTCCGTTATGGTCATCATACTAACGGCCACCTTGAAGTTGATAGGAATTCAGATACTTCAGAGAAGGGAAGAGGAGATGGAGAAAGGTTTGAAATGCTGAAGCGCGAAAAAGATGAGTTGAAAGAAGTGATCGAAGGGAAGGATTATCTGATCAAGAACTACAAGGAGCAAACCGTCGAGCTTTCAATCAAGGTCAAGGAACTGCAACAGAGACTGGATGCTCAGCTCCCAAACATTTTGTAGCCGCGTCGTTAGAGTTGTGTATTCTTTTGTTTGCTTCCCATTCTCTTGATTGATTTTAAAGCTTCATGACATGGGACTTGCTATTTTCTCAGTTTTATCTGAGTTTTTTCTCCCCTCCCCCTCCCTCCACCTTTCTGTTTTGTGTTCATCATGTCGACGAACCGATTTTCGATATACCTTCTCTTAGTATTAGTAGATTGAGTTTGAGGATTGCCCTCCTGTGTTGCTGAACATGTAAAAATGGTTCATCATGCATTGAAAAATTTTCATCTATATATTCAAGAGACTTTTGCTCA</gDNA_template>
            <first_frame> C  F  T  L  P  K  R  Y  L  *  Y  E  R  N  K  T  L  H  Q  K  H  L  L  S  V  L  G  R  *  M  H  L  L  D  *  S   : E  Y  I  I  S  C  G  I  L  L  S  L  F  C  Y  C  N  Q  T  H  E  G  V  A  S  A  L  D  V  K  :  D  Y  F  H  D  L  Q  P  L  H  L  L  L  Q  *  L  *  K  *  S  Q  E  P  T  G  C  Q  G  P  R  S  P  M  V  F  R  V  R  V  L  T  G  S  *  L  Q  V  V  R  Y  *  V  H  Y  L  Y  A  *  G  T  S  *  S  R  C  L  I  Q  D  S  Q  T  R  R  P  A  V  *  K  :  E  M  K  S  L  L  M  E  V  S  *  G  M  V  I  C  S  Q  A  L  T  I  F  P  K  M  M  M  A  A  T  I  A  T  R  :  K  L  E  D  *  E  L  Q  S  S  S  I  M  G  L  S  L  K  W  C  S  L  W  W  Q  F  L  P  S  D  S  I  K  R  M  V  G  F  G  Q  P  L  L  T  V  L  N  Y  H  R  N  H  F  I  A  L  T  A  L  S  H  H  V  S  L  N  P  V  L  T  Y  T  A  S  E  K  *  Y  K  S  *  G  Y  S  *  R  E  G  T  K  Q  Y  *  R  C  K  N  R  L  *  S  C  K  L  L  S  M  L  R  C  R  I  L  L  I  S  S  H  C  W  M  L  P  T  G  I  C  L  I  R  R  E  R  Y  R  G  *  G  R  L  L  Q  I  I  V  L  D  K  *  V  R  A  I  S  P  Q  Q  Y  L  Y  G  Q  L  K  S  V  M  V  I  I  L  T  A  T  L  K  L  I  G  I  Q  I  L  Q  R  R  E  E  E  M  E  K  G  L  K  C  *  S  A  K  K  M  S  *  K  K  *  S  K  G  R  I  I  *  S  R  T  T  R  S  K  P  S  S  F  Q  S  R  S  R  N  C  N  R  D  W  M  L  S  S  Q  T  F  C  S  R  V  V  R  V  V  Y  S  F  V  C  F  P  F  S  *  L  I  L  K  L  H  D  M  G  L  A  I  F  S  V  L  S  E  F  F  L  P  S  P  S  L  H  L  S  V  L  C  S  S  C  R  R  T  D  F  R  Y  T  F  S  *  Y  *  *  I  E  F  E  D  C  P  P  V  L  L  N  M  *  K  W  F  I  M  H  *  K  I  F  I  Y  I  F  K  R  L  L  L  </first_frame>
            <second_frame>  A  L  L  Y  P  S  V  T  C  N  T  K  E  T  K  P  Y  T  R  N  I  F  Y  Q  F  L  V  D  R  C  I  F  L  I  N  Q  :  N  T  L  F  P  V  G  S  C  C  H  C  S  V  T  V  I  R  L  M  K  V  W  H  Q  H  L  T  *  R :   I  T  F  M  I  C  S  L  S  I  Y  Y  F  S  D  Y  R  N  E  A  K  N  Q  R  G  V  K  V  P  E  V  Q  W  C  S  E  *  G  S  *  L  G  H  N  C  R  *  C  V  I  K  Y  I  I  C  T  L  R  V  Q  A  E  A  G  A  *  F  K  T  A  K  Q  D  D  Q  Q  F  E  R :   K  *  K  V  F  *  W  K  *  V  R  E  W  S  Y  A  V  K  H  L  L  F  F  P  R  *  *  W  L  L  Q  L  Q  H  G :   S  W  R  I  R  N  Y  K  A  A  V  *  W  V  *  A  *  N  G  A  P  S  G  G  S  S  C  H  R  I  Q  *  R  E  W  W  G  L  V  N  L  S  *  P  S  *  T  T  T  E  T  I  S  S  L  *  Q  L  *  V  T  M  C  L  *  I  R  F  *  H  I  Q  Q  A  R  S  D  T  K  A  E  A  T  V  K  E  K  G  R  N  N  I  R  D  A  R  T  D  C  R  V  A  S  F  S  Q  C  S  D  V  A  F  C  S  S  A  V  I  A  G  C  C  Q  Q  G  S  V  *  F  G  E  R  D  T  E  A  E  E  G  Y  C  R  S  L  C  W  T  S  R  F  V  R  *  A  P  N  S  T  C  M  A  S  *  S  P  L  W  S  S  Y  *  R  P  P  *  S  *  *  E  F  R  Y  F  R  E  G  K  R  R  W  R  K  V  *  N  A  E  A  R  K  R  *  V  E  R  S  D  R  R  E  G  L  S  D  Q  E  L  Q  G  A  N  R  R  A  F  N  Q  G  Q  G  T  A  T  E  T  G  C  S  A  P  K  H  F  V  A  A  S  L  E  L  C  I  L  L  F  A  S  H  S  L  D  *  F  *  S  F  M  T  W  D  L  L  F  S  Q  F  Y  L  S  F  F  S  P  P  P  P  S  T  F  L  F  C  V  H  H  V  D  E  P  I  F  D  I  P  S  L  S  I  S  R  L  S  L  R  I  A  L  L  C  C  *  T  C  K  N  G  S  S  C  I  E  K  F  S  S  I  Y  S  R  D  F  C  S </second_frame>
            <third_frame>   L  Y  F  T  Q  A  L  L  V  I  R  K  K  Q  N  P  T  P  E  T  S  F  I  S  S  W  S  I  D  A  S  S  *  L  I  R :   I  H  Y  F  L  W  D  L  A  V  I  V  L  L  L  *  S  D  S  *  R  C  G  I  S  T  *  R  E   : G  L  L  S  *  S  A  A  S  P  S  T  T  S  V  T  I  E  M  K  P  R  T  N  G  V  S  R  S  Q  K  S  N  G  V  Q  S  E  G  P  N  W  V  I  I  A  G  S  A  L  L  S  T  L  S  V  R  L  G  Y  K  L  K  Q  V  L  D  S  R  Q  P  N  K  T  T  S  S  L  K   : G  N  E  K  S  S  D  G  S  K  L  G  N  G  H  M  Q  S  S  T  Y  Y  F  S  Q  D  D  D  G  C  Y  N  C  N  T   : E  A  G  G  L  G  I  T  K  Q  Q  Y  N  G  S  E  P  E  M  V  L  P  L  V  A  V  P  A  I  G  F  N  K  E  N  G  G  V  W  S  T  S  P  D  R  L  E  L  P  Q  K  P  F  H  R  S  N  S  S  E  S  P  C  V  S  E  S  G  S  D  I  Y  S  K  R  E  V  I  Q  K  L  R  L  Q  L  K  R  R  D  E  T  I  L  E  M  Q  E  Q  I  V  E  L  Q  A  S  L  N  A  Q  M  S  H  S  A  H  Q  Q  S  L  L  D  A  A  N  R  D  L  F  D  S  E  R  E  I  Q  R  L  R  K  A  I  A  D  H  C  V  G  Q  V  G  S  C  D  K  P  P  T  V  P  V  W  P  A  E  V  R  Y  G  H  H  T  N  G  H  L  E  V  D  R  N  S  D  T  S  E  K  G  R  G  D  G  E  R  F  E  M  L  K  R  E  K  D  E  L  K  E  V  I  E  G  K  D  Y  L  I  K  N  Y  K  E  Q  T  V  E  L  S  I  K  V  K  E  L  Q  Q  R  L  D  A  Q  L  P  N  I  L  *  P  R  R  *  S  C  V  F  F  C  L  L  P  I  L  L  I  D  F  K  A  S  *  H  G  T  C  Y  F  L  S  F  I  *  V  F  S  P  L  P  L  P  P  P  F  C  F  V  F  I  M  S  T  N  R  F  S  I  Y  L  L  L  V  L  V  D  *  V  *  G  L  P  S  C  V  A  E  H  V  K  M  V  H  H  A  L  K  N  F  H  L  Y  I  Q  E  T  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59221" stop="58999"/>
                    <exon start="58917" stop="58813"/>
                    <exon start="57831" stop="57098"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAASPSTTSVTIEMKPRTNGVSRSQKSNGVQSEGPNWVIIAGSALLSTLSVRLGYKLKQVLDSRQPNKTTSSLKGNEKSSDGSKLGNGHMQSSTYYFSQDDDGCYNCNTEAGGLGITKQQYNGSEPEMVLPLVAVPAIGFNKENGGVWSTSPDRLELPQKPFHRSNSSESPCVSESGSDIYSKREVIQKLRLQLKRRDETILEMQEQIVELQASLNAQMSHSAHQQSLLDAANRDLFDSEREIQRLRKAIADHCVGQVGSCDKPPTVPVWPAEVRYGHHTNGHLEVDRNSDTSEKGRGDGERFEMLKREKDELKEVIEGKDYLIKNYKEQTVELSIKVKELQQRLDAQLPNIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62531" stop="62424"/>
                    <exon start="59981" stop="59895"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLYPSVTCNTKETKPYTRNIFYQFLVDRCIFLINQNTLFPVGSCCHCSVTVIRLMKVWHQHLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="66011" PGL_stop="65516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66011" e_stop="65516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="66011" e_stop="65516" e_length="496"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66011" stop="65516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267214" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATGAATTAGTACTTAACACTACTAATAATTACACAAATAATGATTTGGTATTAATGAAGAAACTCATCAAAGATTGTGCTGATAAATATGCATTAGCTACTAATGCACTTCAAGATTCACTTCAAGATTTGAATAATGAAGTTTATGACTATGCTTACATGCATGTTATGGCGGCTGCGGATTATCCTAACGTTTGTCATAATGGATTTAAGAGGAATCCAAGATTGGATTATCCAACTCAACTTGCTATTAGGGAAGATGGATTTAAACATATTTGTGATGTGGTTTTAGGTATTCTTGATGCTCTTGGTTGGTGAAAAAAAATAATCCCCTTTTTTTTTTTTTATGTTATATGATATGTAAACTTTTTCTATTATTATATATGTGTTTAGTTTGTCTTTATCTATGTGTAGATTTAAAGAAATGAGGATTTGTATGTTGCCTTTAATTGTTCACTCTTTTTATGTATTGAGAGTTTACCTTTTTATGCAAG</gDNA_template>
            <first_frame> H  M  N  *  Y  L  T  L  L  I  I  T  Q  I  M  I  W  Y  *  *  R  N  S  S  K  I  V  L  I  N  M  H  *  L  L  M  H  F  K  I  H  F  K  I  *  I  M  K  F  M  T  M  L  T  C  M  L  W  R  L  R  I  I  L  T  F  V  I  M  D  L  R  G  I  Q  D  W  I  I  Q  L  N  L  L  L  G  K  M  D  L  N  I  F  V  M  W  F  *  V  F  L  M  L  L  V  G  E  K  K  *  S  P  F  F  F  F  M  L  Y  D  M  *  T  F  S  I  I  I  Y  V  F  S  L  S  L  S  M  C  R  F  K  E  M  R  I  C  M  L  P  L  I  V  H  S  F  Y  V  L  R  V  Y  L  F  M  Q  </first_frame>
            <second_frame>  T  *  I  S  T  *  H  Y  *  *  L  H  K  *  *  F  G  I  N  E  E  T  H  Q  R  L  C  *  *  I  C  I  S  Y  *  C  T  S  R  F  T  S  R  F  E  *  *  S  L  *  L  C  L  H  A  C  Y  G  G  C  G  L  S  *  R  L  S  *  W  I  *  E  E  S  K  I  G  L  S  N  S  T  C  Y  *  G  R  W  I  *  T  Y  L  *  C  G  F  R  Y  S  *  C  S  W  L  V  K  K  N  N  P  L  F  F  F  L  C  Y  M  I  C  K  L  F  L  L  L  Y  M  C  L  V  C  L  Y  L  C  V  D  L  K  K  *  G  F  V  C  C  L  *  L  F  T  L  F  M  Y  *  E  F  T  F  L  C  K </second_frame>
            <third_frame>   H  E  L  V  L  N  T  T  N  N  Y  T  N  N  D  L  V  L  M  K  K  L  I  K  D  C  A  D  K  Y  A  L  A  T  N  A  L  Q  D  S  L  Q  D  L  N  N  E  V  Y  D  Y  A  Y  M  H  V  M  A  A  A  D  Y  P  N  V  C  H  N  G  F  K  R  N  P  R  L  D  Y  P  T  Q  L  A  I  R  E  D  G  F  K  H  I  C  D  V  V  L  G  I  L  D  A  L  G  W  *  K  K  I  I  P  F  F  F  F  Y  V  I  *  Y  V  N  F  F  Y  Y  Y  I  C  V  *  F  V  F  I  Y  V  *  I  *  R  N  E  D  L  Y  V  A  F  N  C  S  L  F  L  C  I  E  S  L  P  F  Y  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66009" stop="65692"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HELVLNTTNNYTNNDLVLMKKLIKDCADKYALATNALQDSLQDLNNEVYDYAYMHVMAAADYPNVCHNGFKRNPRLDYPTQLAIREDGFKHICDVVLGILDALGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="65854" PGL_stop="66303"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65854" e_stop="66303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="65854" e_stop="66303" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65854" stop="66303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCATAGTCATAAACTTCATTATTCAAATCTTGAAGTGAATCTTGAAGTGCATTAGTAGCTAATGCATATTTATCAGCACAATCTTTGATGAGTTTCTTCATTAATACCAAATCATTATTTGTGTAATTATTAGTAGTGTTAAGTACTAATTCATGTGATGAAAGAAAATTGTTTGTGGCTGTGGCATTGACCATTCCAATTTTGACCATGATAGTTGCTAAGCCTTTTGTGTCTGCTTTGAGGCTTGTGGAATCTGATTTGAGAGATGATACACAAAGATCATAGTATTTTGTGTTTTTACATGTTTTTTGAATCAAATCAATTGATGATGAGGTGGTGGAAATTGTTGGTAATTCATGAAGTGAAATCAAGAAAACAAGAATCAATAAGAAGTGGAAATTACAAGACATATTGACTTTGCTTTTCAAATATATATATTTTTTTCCTTC</gDNA_template>
            <first_frame> S  I  V  I  N  F  I  I  Q  I  L  K  *  I  L  K  C  I  S  S  *  C  I  F  I  S  T  I  F  D  E  F  L  H  *  Y  Q  I  I  I  C  V  I  I  S  S  V  K  Y  *  F  M  *  *  K  K  I  V  C  G  C  G  I  D  H  S  N  F  D  H  D  S  C  *  A  F  C  V  C  F  E  A  C  G  I  *  F  E  R  *  Y  T  K  I  I  V  F  C  V  F  T  C  F  L  N  Q  I  N  *  *  *  G  G  G  N  C  W  *  F  M  K  *  N  Q  E  N  K  N  Q  *  E  V  E  I  T  R  H  I  D  F  A  F  Q  I  Y  I  F  F  S  F </first_frame>
            <second_frame>  A  *  S  *  T  S  L  F  K  S  *  S  E  S  *  S  A  L  V  A  N  A  Y  L  S  A  Q  S  L  M  S  F  F  I  N  T  K  S  L  F  V  *  L  L  V  V  L  S  T  N  S  C  D  E  R  K  L  F  V  A  V  A  L  T  I  P  I  L  T  M  I  V  A  K  P  F  V  S  A  L  R  L  V  E  S  D  L  R  D  D  T  Q  R  S  *  Y  F  V  F  L  H  V  F  *  I  K  S  I  D  D  E  V  V  E  I  V  G  N  S  *  S  E  I  K  K  T  R  I  N  K  K  W  K  L  Q  D  I  L  T  L  L  F  K  Y  I  Y  F  F  P   </second_frame>
            <third_frame>   H  S  H  K  L  H  Y  S  N  L  E  V  N  L  E  V  H  *  *  L  M  H  I  Y  Q  H  N  L  *  *  V  S  S  L  I  P  N  H  Y  L  C  N  Y  *  *  C  *  V  L  I  H  V  M  K  E  N  C  L  W  L  W  H  *  P  F  Q  F  *  P  *  *  L  L  S  L  L  C  L  L  *  G  L  W  N  L  I  *  E  M  I  H  K  D  H  S  I  L  C  F  Y  M  F  F  E  S  N  Q  L  M  M  R  W  W  K  L  L  V  I  H  E  V  K  S  R  K  Q  E  S  I  R  S  G  N  Y  K  T  Y  *  L  C  F  S  N  I  Y  I  F  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0054I23.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="73460" PGL_stop="74191"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73460" e_stop="73670"/>
            <exon e_start="73756" e_stop="73957"/>
            <exon e_start="74045" e_stop="74191"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.965"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73460" e_stop="73670" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73671" i_stop="73755" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="73756" e_stop="73957" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73958" i_stop="74044" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74045" e_stop="74191" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73460" stop="73670"/>
              <exon start="73756" stop="73957"/>
              <exon start="74045" stop="74191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73460" stop="73670"/>
              <exon start="73756" stop="73957"/>
              <exon start="74045" stop="74185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73461" stop="73670"/>
              <exon start="73756" stop="73957"/>
              <exon start="74045" stop="74185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205162" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAG : TGGTCCATACGCGAAAATAGAGATGAGATCAGGAGAGATGGATGGATATGATGCTGTTTTTATTAGTCCTCATAAGTTTCTTGGAGGTCCAGGCACACCTGGAGTTCTTGTAATGAACAAAGCACTCTATAGATTGAGGACTTCGCCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCCTACAATGAAAAG : GACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTACATTGAA</gDNA_template>
            <first_frame> L  R  L  *  R  L  D  W  T  K  T  G  *  *  I  W  K  H  *  G  I  S  L  S  C  I  S  L  R  I  D  H  C  W  V  R  S  Q  L  V  V  M  L  L  G  L  I  L  I  Q  E  P  S  L  V  Y  F  I  K  M  E  L  L  L  A  L  I  S  Q  Q   : V  V  H  T  R  K  *  R  *  D  Q  E  R  W  M  D  M  M  L  F  L  L  V  L  I  S  F  L  E  V  Q  A  H  L  E  F  L  *  *  T  K  H  S  I  D  *  G  L  R  L  H  L  L  V  E  V  V  L  L  I  L  L  T  P  T  M  K  R :   T  H  F  M  W  R  I  L  K  K  G  K  T  L  V  H  R  Q  S  F  R  K  *  E  Q  H  L  H  F  G  *  K  S  S  *  V  I  K  *  L  K  E  W  N  T  L  T  L   </first_frame>
            <second_frame>  *  G  C  R  D  W  I  G  R  K  R  A  S  R  Y  G  S  I  E  G  S  A  *  V  V  *  V  Y  E  *  T  I  V  G  F  V  L  S  L  *  *  C  Y  W  D  L  F  *  Y  K  S  H  R  S  F  T  S  *  K  W  S  F  C  L  L  *  F  R  S  K  :  W  S  I  R  E  N  R  D  E  I  R  R  D  G  W  I  *  C  C  F  Y  *  S  S  *  V  S  W  R  S  R  H  T  W  S  S  C  N  E  Q  S  T  L  *  I  E  D  F  A  S  I  Y  L  W  R  W  Y  C  *  F  C  *  P  L  Q  *  K   : G  H  T  L  C  G  E  Y  *  R  K  G  R  R  W  Y  T  A  N  H  S  E  S  E  N  S  T  C  I  L  G  E  R  V  H  K  S  *  S  N  *  K  N  G  T  H  L  H  *  </second_frame>
            <third_frame>   E  V  V  E  I  G  L  D  E  N  G  L  V  D  M  E  A  L  R  D  Q  L  E  L  Y  K  S  T  N  R  P  L  L  G  S  F  S  A  C  S  N  V  T  G  T  Y  S  D  T  R  A  I  A  R  L  L  H  K  N  G  A  F  A  C  F  D  F  A  A  S :   G  P  Y  A  K  I  E  M  R  S  G  E  M  D  G  Y  D  A  V  F  I  S  P  H  K  F  L  G  G  P  G  T  P  G  V  L  V  M  N  K  A  L  Y  R  L  R  T  S  P  P  S  T  C  G  G  G  T  V  D  F  V  N  P  Y  N  E  K  :  D  T  L  Y  V  E  N  I  E  E  R  E  D  A  G  T  P  P  I  I  Q  K  V  R  T  A  L  A  F  W  V  K  E  F  I  S  H  K  V  I  E  R  M  E  H  T  Y  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73462" stop="73670"/>
                    <exon start="73756" stop="73957"/>
                    <exon start="74045" stop="74191"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVVEIGLDENGLVDMEALRDQLELYKSTNRPLLGSFSACSNVTGTYSDTRAIARLLHKNGAFACFDFAASGPYAKIEMRSGEMDGYDAVFISPHKFLGGPGTPGVLVMNKALYRLRTSPPSTCGGGTVDFVNPYNEKDTLYVENIEEREDAGTPPIIQKVRTALAFWVKEFISHKVIERMEHTYIE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="75901" PGL_stop="75179"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75901" e_stop="75893"/>
            <exon e_start="75811" e_stop="75179"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75901" e_stop="75893" e_length="9"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75892" i_stop="75812" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="75811" e_stop="75179" e_length="633"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75901" stop="75893"/>
              <exon start="75811" stop="75179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75793" stop="75192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392344" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGAAATG : GGCTATACTGGAGTTAAGCCGGGATGGACAAGGATAAGCTTTCCCTACTACATGTCGAAAGAAGAATTTGAGTTCATTCTAGCAGCATTAGAATTCATATCCATTTATGGACAAAGGTTCCTTCCTTTATACAATTTCAATTGGAAGAGTGGTGCTTGGACTTTCAAAAAGAAAGCTTTGAAAGAGACGCTTACGAGAGGGATGGATCACAATTGCAACTTTTGTGGCTCACCAATGATGAAGGAGTTGAACTTAGGTGGTGCCAATACTTGCCATGATAACACAAAAGAAGGATCATGCACTAACAGTAACAAAGAAGGCATTATTTATAAGTACGTAAAGTATCTTGAGACAGCCAAGCGCGTAGCTAGCCTCCTTCCTAAATTCCCACAGCAGAGACCAATACCTGAAGAACTAGACACTAATCTTGTGTCCTTTAGAGCCTGATAAAAATATGTATATGAAAATAAACTTTGTCCAATGTCTTGTTGGGCAAATTCGATCGTTTGATATGTAATAATAACTTCAAAGTCTATGTATTCCCTTCGTTTTGTTTTTACTTGTTCAGTATGTATTTTGTATTTTCTTTAAGAAAAACATAAAGTATTTTTTGATTTCTCATTTGGTGTTGAT</gDNA_template>
            <first_frame> I  E  M  :  G  Y  T  G  V  K  P  G  W  T  R  I  S  F  P  Y  Y  M  S  K  E  E  F  E  F  I  L  A  A  L  E  F  I  S  I  Y  G  Q  R  F  L  P  L  Y  N  F  N  W  K  S  G  A  W  T  F  K  K  K  A  L  K  E  T  L  T  R  G  M  D  H  N  C  N  F  C  G  S  P  M  M  K  E  L  N  L  G  G  A  N  T  C  H  D  N  T  K  E  G  S  C  T  N  S  N  K  E  G  I  I  Y  K  Y  V  K  Y  L  E  T  A  K  R  V  A  S  L  L  P  K  F  P  Q  Q  R  P  I  P  E  E  L  D  T  N  L  V  S  F  R  A  *  *  K  Y  V  Y  E  N  K  L  C  P  M  S  C  W  A  N  S  I  V  *  Y  V  I  I  T  S  K  S  M  Y  S  L  R  F  V  F  T  C  S  V  C  I  L  Y  F  L  *  E  K  H  K  V  F  F  D  F  S  F  G  V  D </first_frame>
            <second_frame>  L  K  W :   A  I  L  E  L  S  R  D  G  Q  G  *  A  F  P  T  T  C  R  K  K  N  L  S  S  F  *  Q  H  *  N  S  Y  P  F  M  D  K  G  S  F  L  Y  T  I  S  I  G  R  V  V  L  G  L  S  K  R  K  L  *  K  R  R  L  R  E  G  W  I  T  I  A  T  F  V  A  H  Q  *  *  R  S  *  T  *  V  V  P  I  L  A  M  I  T  Q  K  K  D  H  A  L  T  V  T  K  K  A  L  F  I  S  T  *  S  I  L  R  Q  P  S  A  *  L  A  S  F  L  N  S  H  S  R  D  Q  Y  L  K  N  *  T  L  I  L  C  P  L  E  P  D  K  N  M  Y  M  K  I  N  F  V  Q  C  L  V  G  Q  I  R  S  F  D  M  *  *  *  L  Q  S  L  C  I  P  F  V  L  F  L  L  V  Q  Y  V  F  C  I  F  F  K  K  N  I  K  Y  F  L  I  S  H  L  V  L   </second_frame>
            <third_frame>   *  N   : G  L  Y  W  S  *  A  G  M  D  K  D  K  L  S  L  L  H  V  E  R  R  I  *  V  H  S  S  S  I  R  I  H  I  H  L  W  T  K  V  P  S  F  I  Q  F  Q  L  E  E  W  C  L  D  F  Q  K  E  S  F  E  R  D  A  Y  E  R  D  G  S  Q  L  Q  L  L  W  L  T  N  D  E  G  V  E  L  R  W  C  Q  Y  L  P  *  *  H  K  R  R  I  M  H  *  Q  *  Q  R  R  H  Y  L  *  V  R  K  V  S  *  D  S  Q  A  R  S  *  P  P  S  *  I  P  T  A  E  T  N  T  *  R  T  R  H  *  S  C  V  L  *  S  L  I  K  I  C  I  *  K  *  T  L  S  N  V  L  L  G  K  F  D  R  L  I  C  N  N  N  F  K  V  Y  V  F  P  S  F  C  F  Y  L  F  S  M  Y  F  V  F  S  L  R  K  T  *  S  I  F  *  F  L  I  W  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75901" stop="75893"/>
                    <exon start="75811" stop="75365"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IEMGYTGVKPGWTRISFPYYMSKEEFEFILAALEFISIYGQRFLPLYNFNWKSGAWTFKKKALKETLTRGMDHNCNFCGSPMMKELNLGGANTCHDNTKEGSCTNSNKEGIIYKYVKYLETAKRVASLLPKFPQQRPIPEELDTNLVSFRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75815" e_stop="75192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="75815" e_stop="75192" e_length="624"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75815" stop="75520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75793" stop="75192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392344" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGGGCTATACTGGAGTTAAGCCGGGATGGACAAGGATAAGCTTTCCCTACTACATGTCGAAAGAAGAATTTGAGTTCATTCTAGCAGCATTAGAATTCATATCCATTTATGGACAAAGGTTCCTTCCTTTATACAATTTCAATTGGAAGAGTGGTGCTTGGACTTTCAAAAAGAAAGCTTTGAAAGAGACGCTTACGAGAGGGATGGATCACAATTGCAACTTTTGTGGCTCACCAATGATGAAGGAGTTGAACTTAGGTGGTGCCAATACTTGCCATGATAACACAAAAGAAGGATCATGCACTAACAGTAACAAAGAAGGCATTATTTATAAGTACGTAAAGTATCTTGAGACAGCCAAGCGCGTAGCTAGCCTCCTTCCTAAATTCCCACAGCAGAGACCAATACCTGAAGAACTAGACACTAATCTTGTGTCCTTTAGAGCCTGATAAAAATATGTATATGAAAATAAACTTTGTCCAATGTCTTGTTGGGCAAATTCGATCGTTTGATATGTAATAATAACTTCAAAGTCTATGTATTCCCTTCGTTTTGTTTTTACTTGTTCAGTATGTATTTTGTATTTTCTTTAAGAAAAACATAAAGTATTTTTTGATTTCTC</gDNA_template>
            <first_frame> I  G  L  Y  W  S  *  A  G  M  D  K  D  K  L  S  L  L  H  V  E  R  R  I  *  V  H  S  S  S  I  R  I  H  I  H  L  W  T  K  V  P  S  F  I  Q  F  Q  L  E  E  W  C  L  D  F  Q  K  E  S  F  E  R  D  A  Y  E  R  D  G  S  Q  L  Q  L  L  W  L  T  N  D  E  G  V  E  L  R  W  C  Q  Y  L  P  *  *  H  K  R  R  I  M  H  *  Q  *  Q  R  R  H  Y  L  *  V  R  K  V  S  *  D  S  Q  A  R  S  *  P  P  S  *  I  P  T  A  E  T  N  T  *  R  T  R  H  *  S  C  V  L  *  S  L  I  K  I  C  I  *  K  *  T  L  S  N  V  L  L  G  K  F  D  R  L  I  C  N  N  N  F  K  V  Y  V  F  P  S  F  C  F  Y  L  F  S  M  Y  F  V  F  S  L  R  K  T  *  S  I  F  *  F  L </first_frame>
            <second_frame>  *  G  Y  T  G  V  K  P  G  W  T  R  I  S  F  P  Y  Y  M  S  K  E  E  F  E  F  I  L  A  A  L  E  F  I  S  I  Y  G  Q  R  F  L  P  L  Y  N  F  N  W  K  S  G  A  W  T  F  K  K  K  A  L  K  E  T  L  T  R  G  M  D  H  N  C  N  F  C  G  S  P  M  M  K  E  L  N  L  G  G  A  N  T  C  H  D  N  T  K  E  G  S  C  T  N  S  N  K  E  G  I  I  Y  K  Y  V  K  Y  L  E  T  A  K  R  V  A  S  L  L  P  K  F  P  Q  Q  R  P  I  P  E  E  L  D  T  N  L  V  S  F  R  A  *  *  K  Y  V  Y  E  N  K  L  C  P  M  S  C  W  A  N  S  I  V  *  Y  V  I  I  T  S  K  S  M  Y  S  L  R  F  V  F  T  C  S  V  C  I  L  Y  F  L  *  E  K  H  K  V  F  F  D  F   </second_frame>
            <third_frame>   R  A  I  L  E  L  S  R  D  G  Q  G  *  A  F  P  T  T  C  R  K  K  N  L  S  S  F  *  Q  H  *  N  S  Y  P  F  M  D  K  G  S  F  L  Y  T  I  S  I  G  R  V  V  L  G  L  S  K  R  K  L  *  K  R  R  L  R  E  G  W  I  T  I  A  T  F  V  A  H  Q  *  *  R  S  *  T  *  V  V  P  I  L  A  M  I  T  Q  K  K  D  H  A  L  T  V  T  K  K  A  L  F  I  S  T  *  S  I  L  R  Q  P  S  A  *  L  A  S  F  L  N  S  H  S  R  D  Q  Y  L  K  N  *  T  L  I  L  C  P  L  E  P  D  K  N  M  Y  M  K  I  N  F  V  Q  C  L  V  G  Q  I  R  S  F  D  M  *  *  *  L  Q  S  L  C  I  P  F  V  L  F  L  L  V  Q  Y  V  F  C  I  F  F  K  K  N  I  K  Y  F  L  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75811" stop="75365"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYTGVKPGWTRISFPYYMSKEEFEFILAALEFISIYGQRFLPLYNFNWKSGAWTFKKKALKETLTRGMDHNCNFCGSPMMKELNLGGANTCHDNTKEGSCTNSNKEGIIYKYVKYLETAKRVASLLPKFPQQRPIPEELDTNLVSFRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="76953" PGL_stop="76223"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76953" e_stop="76743"/>
            <exon e_start="76658" e_stop="76457"/>
            <exon e_start="76369" e_stop="76223"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76953" e_stop="76743" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76742" i_stop="76659" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76658" e_stop="76457" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76456" i_stop="76370" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76369" e_stop="76223" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76953" stop="76743"/>
              <exon start="76658" stop="76457"/>
              <exon start="76369" stop="76223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76953" stop="76743"/>
              <exon start="76658" stop="76457"/>
              <exon start="76369" stop="76229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76952" stop="76743"/>
              <exon start="76658" stop="76457"/>
              <exon start="76369" stop="76229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205162" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAGGTTGTAGAGATTGGATTGGACGAAAACGGGCTAGTAGATATGGAAGCATTGAGGGATCAGCTTGAGTTGTATAAGTCTACGAATAGACCATTGTTGGGTTCGTTCTCAGCTTGTAGTAATGTTACTGGGACTTATTCTGATACAAGAGCCATCGCTCGTTTACTTCATAAAAATGGAGCTTTTGCTTGCTTTGATTTCGCAGCAAG : TGGTCCATATGCGAAAATAGAGATGAGATCAGGAGAGATCGATGGATATGATGCTGTTTTTATTAGTCCTCATAAATTTCTTGGAGGTCCAGGCACACCTGGAATTCTTGTAATGAACAAAGCACTCTATCGATTGAGGACTTCACCTCCATCTACTTGTGGAGGTGGTACTGTTGATTTTGTTAACCCGTACAATGAAAAG : GACACACTTTATGTGGAGAATATTGAAGAAAGGGAAGACGCTGGTACACCGCCAATCATTCAGAAAGTGAGAACAGCACTTGCATTTTGGGTGAAAGAGTTCATAAGTCATAAAGTAATTGAAAGAATGGAACACACTTACATTGAA</gDNA_template>
            <first_frame> L  R  L  *  R  L  D  W  T  K  T  G  *  *  I  W  K  H  *  G  I  S  L  S  C  I  S  L  R  I  D  H  C  W  V  R  S  Q  L  V  V  M  L  L  G  L  I  L  I  Q  E  P  S  L  V  Y  F  I  K  M  E  L  L  L  A  L  I  S  Q  Q   : V  V  H  M  R  K  *  R  *  D  Q  E  R  S  M  D  M  M  L  F  L  L  V  L  I  N  F  L  E  V  Q  A  H  L  E  F  L  *  *  T  K  H  S  I  D  *  G  L  H  L  H  L  L  V  E  V  V  L  L  I  L  L  T  R  T  M  K  R :   T  H  F  M  W  R  I  L  K  K  G  K  T  L  V  H  R  Q  S  F  R  K  *  E  Q  H  L  H  F  G  *  K  S  S  *  V  I  K  *  L  K  E  W  N  T  L  T  L   </first_frame>
            <second_frame>  *  G  C  R  D  W  I  G  R  K  R  A  S  R  Y  G  S  I  E  G  S  A  *  V  V  *  V  Y  E  *  T  I  V  G  F  V  L  S  L  *  *  C  Y  W  D  L  F  *  Y  K  S  H  R  S  F  T  S  *  K  W  S  F  C  L  L  *  F  R  S  K  :  W  S  I  C  E  N  R  D  E  I  R  R  D  R  W  I  *  C  C  F  Y  *  S  S  *  I  S  W  R  S  R  H  T  W  N  S  C  N  E  Q  S  T  L  S  I  E  D  F  T  S  I  Y  L  W  R  W  Y  C  *  F  C  *  P  V  Q  *  K   : G  H  T  L  C  G  E  Y  *  R  K  G  R  R  W  Y  T  A  N  H  S  E  S  E  N  S  T  C  I  L  G  E  R  V  H  K  S  *  S  N  *  K  N  G  T  H  L  H  *  </second_frame>
            <third_frame>   E  V  V  E  I  G  L  D  E  N  G  L  V  D  M  E  A  L  R  D  Q  L  E  L  Y  K  S  T  N  R  P  L  L  G  S  F  S  A  C  S  N  V  T  G  T  Y  S  D  T  R  A  I  A  R  L  L  H  K  N  G  A  F  A  C  F  D  F  A  A  S :   G  P  Y  A  K  I  E  M  R  S  G  E  I  D  G  Y  D  A  V  F  I  S  P  H  K  F  L  G  G  P  G  T  P  G  I  L  V  M  N  K  A  L  Y  R  L  R  T  S  P  P  S  T  C  G  G  G  T  V  D  F  V  N  P  Y  N  E  K  :  D  T  L  Y  V  E  N  I  E  E  R  E  D  A  G  T  P  P  I  I  Q  K  V  R  T  A  L  A  F  W  V  K  E  F  I  S  H  K  V  I  E  R  M  E  H  T  Y  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76951" stop="76743"/>
                    <exon start="76658" stop="76457"/>
                    <exon start="76369" stop="76223"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVVEIGLDENGLVDMEALRDQLELYKSTNRPLLGSFSACSNVTGTYSDTRAIARLLHKNGAFACFDFAASGPYAKIEMRSGEIDGYDAVFISPHKFLGGPGTPGILVMNKALYRLRTSPPSTCGGGTVDFVNPYNEKDTLYVENIEEREDAGTPPIIQKVRTALAFWVKEFISHKVIERMEHTYIE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="77676" PGL_stop="77171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77676" e_stop="77348"/>
            <exon e_start="77253" e_stop="77171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.988" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="77676" e_stop="77348" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.988">
            <gDNA_intron_boundary i_start="77347" i_stop="77254" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77253" e_stop="77171" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77676" stop="77348"/>
              <exon start="77253" stop="77171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATTTGAACAACCAATGTTTAGAGAACACCACAACACTAAGAAATATAACCATAGTAGTTCTATTAGTAGTACTGTTTCCTCTGTTGCTTCACATGAAGATTTGAGAAGTAGAATTGAATCATTTCATGTTAGGGAAAAAGCTATTTCCAAAACTGAATCTGCTGAAAAAAAACTTTCATGGTTACGTTCACAGATTATTGGTGAAAATGTCGATTTCGATTCGCCTTTTGGGAAACGTAGGCTTACTTATGCTGATCATACTGCCTCTGGAAGATCACTTCAATATATCGAAAATTATATCATCAATAACGTCCTTCCTTTCTATG : GTAATAGTCATACTAGTGACAGTCATGTGGGATATCAAACGACGAAAATAGTGCATGAAGCAGCAGCTTATGTGAAGAAATGC</gDNA_template>
            <first_frame> G  I  *  T  T  N  V  *  R  T  P  Q  H  *  E  I  *  P  *  *  F  Y  *  *  Y  C  F  L  C  C  F  T  *  R  F  E  K  *  N  *  I  I  S  C  *  G  K  S  Y  F  Q  N  *  I  C  *  K  K  T  F  M  V  T  F  T  D  Y  W  *  K  C  R  F  R  F  A  F  W  E  T  *  A  Y  L  C  *  S  Y  C  L  W  K  I  T  S  I  Y  R  K  L  Y  H  Q  *  R  P  S  F  L  W :   *  *  S  Y  *  *  Q  S  C  G  I  S  N  D  E  N  S  A  *  S  S  S  L  C  E  E  M  </first_frame>
            <second_frame>  E  F  E  Q  P  M  F  R  E  H  H  N  T  K  K  Y  N  H  S  S  S  I  S  S  T  V  S  S  V  A  S  H  E  D  L  R  S  R  I  E  S  F  H  V  R  E  K  A  I  S  K  T  E  S  A  E  K  K  L  S  W  L  R  S  Q  I  I  G  E  N  V  D  F  D  S  P  F  G  K  R  R  L  T  Y  A  D  H  T  A  S  G  R  S  L  Q  Y  I  E  N  Y  I  I  N  N  V  L  P  F  Y   : G  N  S  H  T  S  D  S  H  V  G  Y  Q  T  T  K  I  V  H  E  A  A  A  Y  V  K  K  C </second_frame>
            <third_frame>   N  L  N  N  Q  C  L  E  N  T  T  T  L  R  N  I  T  I  V  V  L  L  V  V  L  F  P  L  L  L  H  M  K  I  *  E  V  E  L  N  H  F  M  L  G  K  K  L  F  P  K  L  N  L  L  K  K  N  F  H  G  Y  V  H  R  L  L  V  K  M  S  I  S  I  R  L  L  G  N  V  G  L  L  M  L  I  I  L  P  L  E  D  H  F  N  I  S  K  I  I  S  S  I  T  S  F  L  S  M  :  V  I  V  I  L  V  T  V  M  W  D  I  K  R  R  K  *  C  M  K  Q  Q  L  M  *  R  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77675" stop="77348"/>
                    <exon start="77253" stop="77171"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFEQPMFREHHNTKKYNHSSSISSTVSSVASHEDLRSRIESFHVREKAISKTESAEKKLSWLRSQIIGENVDFDSPFGKRRLTYADHTASGRSLQYIENYIINNVLPFYGNSHTSDSHVGYQTTKIVHEAAAYVKKC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="92643" PGL_stop="92258"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92643" e_stop="92258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="92643" e_stop="92258" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92643" stop="92258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTGCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGCCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTACGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAAGGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</gDNA_template>
            <first_frame> R  K  W  R  L  V  D  D  F  F  F  I  I  L  L  S  H  F  T  V  G  A  T  V  I  C  S  Q  I  M  G  E  V  F  S  A  L  W  V  A  M  G  R  Q  F  L  V  E  R  R  V  S  A  Q  Q  H  S  S  L  D  I  Y  L  R  L  S  R  L  S  F  V  Y  L  Q  T  K  Q  V  Q  P  F  P  *  A  Y  G  F  H  L  N  L  L  L  S  L  Y  L  *  R  Q  I  F  I  Q  G  C  D  R  S  F  V  D  R  R  G  R  V  Y  F  E  S  F  L  L  N  P  L  N   </first_frame>
            <second_frame>  E  N  G  G  L  *  T  I  S  S  S  S  S  C  S  V  T  S  R  S  G  P  L  L  S  A  P  R  S  W  A  R  Y  F  P  P  F  G  S  L  W  V  A  N  S  S  S  S  A  A  F  L  P  N  N  T  A  V  S  I  S  I  F  A  S  L  A  F  P  S  C  I  S  K  R  S  K  F  N  L  F  L  R  L  T  V  S  I  S  T  S  F  F  L  F  I  C  D  A  R  S  S  S  K  V  V  T  A  A  L  *  I  A  V  V  A  S  T  L  S  P  S  S  L  T  L  *  I  </second_frame>
            <third_frame>   K  M  E  A  C  R  R  F  L  L  H  H  P  A  Q  S  L  H  G  R  G  H  C  Y  L  L  P  D  H  G  R  G  I  F  R  P  L  G  R  Y  G  S  P  I  P  R  R  A  P  R  F  C  P  T  T  Q  Q  S  R  Y  L  S  S  P  L  S  P  F  L  R  V  S  P  N  E  A  S  S  T  F  S  L  G  L  R  F  P  S  Q  P  P  S  F  S  L  S  V  T  P  D  L  H  P  R  L  *  P  Q  L  C  R  S  P  W  S  R  L  L  *  V  L  P  P  *  P  S  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92641" stop="92324"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMEACRRFLLHHPAQSLHGRGHCYLLPDHGRGIFRPLGRYGSPIPRRAPRFCPTTQQSRYLSSPLSPFLRVSPNEASSTFSLGLRFPSQPPSFSLSVTPDLHPRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92624" stop="92310"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TISSSSSCSVTSRSGPLLSAPRSWARYFPPFGSLWVANSSSSAAFLPNNTAVSISIFASLAFPSCISKRSKFNLFLRLTVSISTSFFLFICDARSSSKVVTAAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92643" stop="92395"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKWRLVDDFFFIILLSHFTVGATVICSQIMGEVFSALWVAMGRQFLVERRVSAQQHSSLDIYLRLSRLSFVYLQTKQVQPFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="93481" PGL_stop="92947"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93481" e_stop="92947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="93481" e_stop="92947" e_length="535"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93481" stop="92947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCTGGTTCTGAGTTGGACCTATGTTTGATGAAGGGAAGTAGACGGGAGGTCTTGCATCAGCAGTATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGCATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAGGTACCTGAGATGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAACACACAAGTCATTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAAGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</gDNA_template>
            <first_frame> R  L  V  L  S  W  T  Y  V  *  *  R  E  V  D  G  R  S  C  I  S  S  I  S  T  K  S  R  W  R  R  I  L  S  P  L  H  F  N  F  H  F  S  N  L  L  H  Q  L  H  D  Q  F  V  L  F  H  Y  S  G  L  S  H  H  N  V  S  K  T  P  F  V  I  V  V  S  H  N  C  F  S  F  V  *  I  *  S  R  E  G  I  C  R  T  F  R  S  G  E  V  R  M  I  C  Q  L  Y  *  H  R  S  V  K  G  T  *  D  V  K  T  T  Q  R  Q  I  C  *  C  I  S  R  V  Q  N  A  *  Y  R  T  *  N  R  *  T  H  K  S  F  C  L  R  I  S  *  P  T  N  K  D  G  Y  I  F  *  T  N  K  N  L  F  V  W  R  Y  L  G  K  S  </first_frame>
            <second_frame>  G  W  F  *  V  G  P  M  F  D  E  G  K  *  T  G  G  L  A  S  A  V  L  V  P  N  P  G  G  G  A  S  C  L  R  C  I  S  T  F  I  S  A  I  C  C  I  S  C  M  I  N  S  F  C  S  T  T  V  G  *  A  T  T  T  S  V  R  R  P  S  S  L  L  S  P  I  T  V  F  P  L  S  E  F  D  R  G  K  E  S  V  G  P  F  D  L  V  K  *  G  *  S  A  S  F  I  D  T  D  Q  *  K  V  P  E  M  *  K  Q  L  K  G  K  F  V  S  A  Y  P  E  Y  K  M  H  N  I  A  H  K  T  D  K  H  T  S  H  F  V  *  G  Y  L  N  P  R  I  R  T  D  I  Y  F  E  Q  T  R  I  C  L  F  G  A  I  L  G  N  L </second_frame>
            <third_frame>   A  G  S  E  L  D  L  C  L  M  K  G  S  R  R  E  V  L  H  Q  Q  Y  *  Y  Q  I  Q  V  E  A  H  P  V  S  V  A  F  Q  L  S  F  Q  Q  S  V  A  S  A  A  *  S  I  R  S  V  P  L  Q  W  A  E  P  P  Q  R  Q  *  D  A  L  R  H  C  C  L  P  *  L  F  F  L  C  L  N  L  I  E  G  R  N  L  *  D  L  S  I  W  *  S  K  D  D  L  P  A  L  L  T  Q  I  S  K  R  Y  L  R  C  K  N  N  S  K  A  N  L  L  V  H  I  Q  S  T  K  C  I  I  S  H  I  K  Q  I  N  T  Q  V  I  L  F  E  D  I  L  T  H  E  *  G  R  I  Y  I  L  N  K  Q  E  F  V  C  L  A  L  S  W  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93448" stop="93230"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVDGRSCISSISTKSRWRRILSPLHFNFHFSNLLHQLHDQFVLFHYSGLSHHNVSKTPFVIVVSHNCFSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="99573" PGL_stop="100367"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99573" e_stop="100367"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="99573" e_stop="100367" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99573" stop="100313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99632" stop="100367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99632" stop="100327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99632" stop="100326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTTGATAAGGGTGCCACCTCACGAACTCAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCATCATCACTGATAATGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCTCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACTG</gDNA_template>
            <first_frame> R  F  D  K  G  A  T  S  R  T  Q  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  S  Y  R  T  G  R  F  Q  W  T  Q  I  Y  F  G  C  H  R  L  F  H  Q  M  G  G  S  S  L  L  Q  I  G  N  Q  E  S  G  G  R  L  C  P  Q  Q  F  D  L  P  I  W  S  S  R  I  H  H  H  *  *  W  C  K  S  Q  Q  S  S  D  E  R  D  M  *  T  I  *  D  Y  P  P  K  V  N  C  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  E  D  S  E  E  N  D  *  Q  A  A  G  L  A  *  N  V  A  I  C  S  T  G  L  S  N  D  G  Q  N  I  N  W  G  Y  S  I  L  A  S  I  R  N  R  S  S  R  T  C  R  S  R  D  T  V  T  E  D  H  P  R  S  R  A  K  *  C  *  V  G  *  Q  T  D  *  S  T  S  L  D  *  *  K  E  D  G  C  C  L  S  W  P  V  V  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S  *  A  Y  F  S  S  S  R  R  V  Q  R  K  V  R  T  K  L </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  A  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  I  I  T  D  N  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  I  H  R  R  S  T  A  Y  L  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  R  I  D  Q  L  A  L  I  D  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  P  H  Q  D  E  Y  K  G  K  F  A  P  N   </second_frame>
            <third_frame>   I  *  *  G  C  H  L  T  N  S  M  L  *  V  H  L  G  H  L  *  L  G  E  W  M  S  S  V  L  *  N  R  P  L  P  M  D  T  D  L  F  W  L  P  S  I  I  S  P  N  G  W  K  Q  P  L  T  N  R  *  P  R  K  W  W  P  T  L  S  A  T  I  *  S  A  D  L  E  F  Q  N  P  S  S  L  I  M  V  Q  I  S  T  V  I  *  *  K  R  Y  V  N  N  L  R  L  S  T  E  G  Q  L  L  I  S  L  K  *  T  E  L  *  R  P  P  T  R  T  S  R  R  F  *  G  K  *  L  T  S  S  G  V  G  M  K  C  C  H  M  L  Y  W  V  I  E  R  R  S  E  H  Q  L  G  L  L  H  T  C  *  Y  T  E  Q  K  Q  S  Y  L  S  K  S  R  Y  R  H  *  G  S  S  K  K  P  S  *  V  M  L  S  G  L  A  N  G  L  I  N  *  P  *  L  M  K  R  G  W  L  L  F  V  M  A  S  C  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  L  S  V  F  F  L  I  K  T  S  T  K  E  S  S  H  Q  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99574" stop="100365"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHELNAMSSPWPFVAWGMDVIGPIEPAASNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPESIITDNGANLNSHLMKEICEQFKIIHRRSTAYLPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYRTTVRTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKRIDQLALIDEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFPHQDEYKGKFAPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="125895" PGL_stop="121369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125895" e_stop="125620"/>
            <exon e_start="125191" e_stop="125113"/>
            <exon e_start="124712" e_stop="124645"/>
            <exon e_start="122070" e_stop="121982"/>
            <exon e_start="121502" e_stop="121369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.839" e_score="0.996"/>
          <exon-intron don_prob="0.988" acc_prob="0.471" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="125895" e_stop="125620" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.839">
            <gDNA_intron_boundary i_start="125619" i_stop="125192" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125191" e_stop="125113" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.471">
            <gDNA_intron_boundary i_start="125112" i_stop="124713" i_length="400"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124712" e_stop="124645" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="1.000">
            <gDNA_intron_boundary i_start="124644" i_stop="122071" i_length="2574"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122070" e_stop="121982" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.648">
            <gDNA_intron_boundary i_start="121981" i_stop="121503" i_length="479"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="121502" e_stop="121369" e_length="134"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125895" stop="125620"/>
              <exon start="125191" stop="125113"/>
              <exon start="124712" stop="124645"/>
              <exon start="122070" stop="121982"/>
              <exon start="121502" stop="121486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125191" stop="125113"/>
              <exon start="124712" stop="124645"/>
              <exon start="122070" stop="121982"/>
              <exon start="121502" stop="121369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365697" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCGACTCTCTGAACTCTGAAGCATCGAAAATTGTGTAATTTTGTAGCCATTGATGAGTCGAGGAGTGTGAAATTTTGTATAAGAAATGGGGAACAGAGGCCATACTCAGTACAGAACGACAAGGAGGACATCCAATTTCTCAATTACTCTCTACATTTTCCTCTTTTTTGTTTTGTCAATGTTCGTATTCTTTTATTACACTAAGGATATCGTAGAAGATGAACAAAAGCTTGTCTTGGCATCGGAGAAGAAGGAAGAGCCTGAATTCGATGAG : AATGAAGATAATTCTGTTTGGGAAGCTTCAAAGAGCCATGGTTTACATCCATGCATTAAGCCAACTGCAAAATACAAAG : CTGCTCTAGGGTGGAAACGCTACTTGACTGTAAAAAGTAATGGTGGATTAAATCAAATGAGGACGGGT : ATAGCTGACATGGTGGCAGTGGCACATGTGATGAATGCAACTTTGGTAATTCCTCAATTGGACAAGCGTTCATTCTGGCAAGATTCAAG : ATATATTTGATGAGAACCATTTCATCAAAGCATTAAGAGGAGACCTCATGATTATTAAAGAGCTTCCTAAAGAAATAGAATCTTTACCTCGAGCTAGGAAGCACTTCACGTCATGGTCAGGAGTGGGTTACTAT</gDNA_template>
            <first_frame> I  R  L  S  E  L  *  S  I  E  N  C  V  I  L  *  P  L  M  S  R  G  V  *  N  F  V  *  E  M  G  N  R  G  H  T  Q  Y  R  T  T  R  R  T  S  N  F  S  I  T  L  Y  I  F  L  F  F  V  L  S  M  F  V  F  F  Y  Y  T  K  D  I  V  E  D  E  Q  K  L  V  L  A  S  E  K  K  E  E  P  E  F  D  E  :  N  E  D  N  S  V  W  E  A  S  K  S  H  G  L  H  P  C  I  K  P  T  A  K  Y  K   : A  A  L  G  W  K  R  Y  L  T  V  K  S  N  G  G  L  N  Q  M  R  T  G  :  I  A  D  M  V  A  V  A  H  V  M  N  A  T  L  V  I  P  Q  L  D  K  R  S  F  W  Q  D  S  R :   Y  I  *  *  E  P  F  H  Q  S  I  K  R  R  P  H  D  Y  *  R  A  S  *  R  N  R  I  F  T  S  S  *  E  A  L  H  V  M  V  R  S  G  L  L  </first_frame>
            <second_frame>  F  D  S  L  N  S  E  A  S  K  I  V  *  F  C  S  H  *  *  V  E  E  C  E  I  L  Y  K  K  W  G  T  E  A  I  L  S  T  E  R  Q  G  G  H  P  I  S  Q  L  L  S  T  F  S  S  F  L  F  C  Q  C  S  Y  S  F  I  T  L  R  I  S  *  K  M  N  K  S  L  S  W  H  R  R  R  R  K  S  L  N  S  M  R :   M  K  I  I  L  F  G  K  L  Q  R  A  M  V  Y  I  H  A  L  S  Q  L  Q  N  T  K  :  L  L  *  G  G  N  A  T  *  L  *  K  V  M  V  D  *  I  K  *  G  R  V :   *  L  T  W  W  Q  W  H  M  *  *  M  Q  L  W  *  F  L  N  W  T  S  V  H  S  G  K  I  Q   : D  I  F  D  E  N  H  F  I  K  A  L  R  G  D  L  M  I  I  K  E  L  P  K  E  I  E  S  L  P  R  A  R  K  H  F  T  S  W  S  G  V  G  Y  Y </second_frame>
            <third_frame>   S  T  L  *  T  L  K  H  R  K  L  C  N  F  V  A  I  D  E  S  R  S  V  K  F  C  I  R  N  G  E  Q  R  P  Y  S  V  Q  N  D  K  E  D  I  Q  F  L  N  Y  S  L  H  F  P  L  F  C  F  V  N  V  R  I  L  L  L  H  *  G  Y  R  R  R  *  T  K  A  C  L  G  I  G  E  E  G  R  A  *  I  R  *   : E  *  R  *  F  C  L  G  S  F  K  E  P  W  F  T  S  M  H  *  A  N  C  K  I  Q  S :   C  S  R  V  E  T  L  L  D  C  K  K  *  W  W  I  K  S  N  E  D  G   : Y  S  *  H  G  G  S  G  T  C  D  E  C  N  F  G  N  S  S  I  G  Q  A  F  I  L  A  R  F  K  :  I  Y  L  M  R  T  I  S  S  K  H  *  E  E  T  S  *  L  L  K  S  F  L  K  K  *  N  L  Y  L  E  L  G  S  T  S  R  H  G  Q  E  W  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125811" stop="125620"/>
                    <exon start="125191" stop="125113"/>
                    <exon start="124712" stop="124645"/>
                    <exon start="122070" stop="121982"/>
                    <exon start="121502" stop="121493"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMGNRGHTQYRTTRRTSNFSITLYIFLFFVLSMFVFFYYTKDIVEDEQKLVLASEKKEEPEFDENEDNSVWEASKSHGLHPCIKPTAKYKAALGWKRYLTVKSNGGLNQMRTGIADMVAVAHVMNATLVIPQLDKRSFWQDSRYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="132631" PGL_stop="127961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132631" e_stop="132458"/>
            <exon e_start="128400" e_stop="127961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132631" e_stop="132458" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="132457" i_stop="128401" i_length="4057"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="128400" e_stop="127961" e_length="440"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132631" stop="132458"/>
              <exon start="128400" stop="128147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132629" stop="132458"/>
              <exon start="128400" stop="128073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132626" stop="132458"/>
              <exon start="128400" stop="127961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132618" stop="132458"/>
              <exon start="128400" stop="128177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132612" stop="132458"/>
              <exon start="128400" stop="128147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132612" stop="132458"/>
              <exon start="128400" stop="128147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132611" stop="132458"/>
              <exon start="128400" stop="128147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132599" stop="132458"/>
              <exon start="128400" stop="128191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132550" stop="132458"/>
              <exon start="128400" stop="128081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218343" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAAGAAGAAAGAGTTTACTCCAATGGCGTCTGGATGGGGAATTACAGGGAATAAAGGACGATGCTATGATTTCTGGATGGATTTCAGTGAGTGTATGTCTCGATGCAGGGAGCCCAAGGACTGTGTACTTCTTAGAGAAGACTACTTCGAGTGTCTTCATCATTCCAAAGAG : TATCAACGTAGGAACCGAATCTACAAAGAGGAGCAGCGCCAATTGAGAGCTGCTTCACAAAAGAAAAAGGAAGGTGTAGATGGTGGTGGTGGTGGTCATCACTGACCTTTATTATTCTTGATCAATCATGGTTTTATCAACTAAAAGACATTGAAGTAAACTGTATGTGGTTTTGAATTTTGAAATAAAGAATTCTATCAGTTGCATTTGATGTGAGTTGCATCATTGAAATGACTCAGTTCAGTTTCTTTCTCATATGGCCTGGCCTTCGTTTTGTTGGTGATAAGGAACATATGTTTTAAGGGCACATTTACTTCTTACCATTGGCACTAGACCTATGATATCAGTTCTTTCTTTGAAATCTGTGACTCTTACGTGTAATATGAAATTCGCGATGGGAAGCCTGCATCATGATGAAAAGAGCTAGGATTTTGCTAAAT</gDNA_template>
            <first_frame> R  K  K  K  E  F  T  P  M  A  S  G  W  G  I  T  G  N  K  G  R  C  Y  D  F  W  M  D  F  S  E  C  M  S  R  C  R  E  P  K  D  C  V  L  L  R  E  D  Y  F  E  C  L  H  H  S  K  E  :  Y  Q  R  R  N  R  I  Y  K  E  E  Q  R  Q  L  R  A  A  S  Q  K  K  K  E  G  V  D  G  G  G  G  G  H  H  *  P  L  L  F  L  I  N  H  G  F  I  N  *  K  T  L  K  *  T  V  C  G  F  E  F  *  N  K  E  F  Y  Q  L  H  L  M  *  V  A  S  L  K  *  L  S  S  V  S  F  S  Y  G  L  A  F  V  L  L  V  I  R  N  I  C  F  K  G  T  F  T  S  Y  H  W  H  *  T  Y  D  I  S  S  F  F  E  I  C  D  S  Y  V  *  Y  E  I  R  D  G  K  P  A  S  *  *  K  E  L  G  F  C  *   </first_frame>
            <second_frame>  G  R  R  K  S  L  L  Q  W  R  L  D  G  E  L  Q  G  I  K  D  D  A  M  I  S  G  W  I  S  V  S  V  C  L  D  A  G  S  P  R  T  V  Y  F  L  E  K  T  T  S  S  V  F  I  I  P  K  S :   I  N  V  G  T  E  S  T  K  R  S  S  A  N  *  E  L  L  H  K  R  K  R  K  V  *  M  V  V  V  V  V  I  T  D  L  Y  Y  S  *  S  I  M  V  L  S  T  K  R  H  *  S  K  L  Y  V  V  L  N  F  E  I  K  N  S  I  S  C  I  *  C  E  L  H  H  *  N  D  S  V  Q  F  L  S  H  M  A  W  P  S  F  C  W  *  *  G  T  Y  V  L  R  A  H  L  L  L  T  I  G  T  R  P  M  I  S  V  L  S  L  K  S  V  T  L  T  C  N  M  K  F  A  M  G  S  L  H  H  D  E  K  S  *  D  F  A  K  </second_frame>
            <third_frame>   E  E  E  R  V  Y  S  N  G  V  W  M  G  N  Y  R  E  *  R  T  M  L  *  F  L  D  G  F  Q  *  V  Y  V  S  M  Q  G  A  Q  G  L  C  T  S  *  R  R  L  L  R  V  S  S  S  F  Q  R   : V  S  T  *  E  P  N  L  Q  R  G  A  A  P  I  E  S  C  F  T  K  E  K  G  R  C  R  W  W  W  W  W  S  S  L  T  F  I  I  L  D  Q  S  W  F  Y  Q  L  K  D  I  E  V  N  C  M  W  F  *  I  L  K  *  R  I  L  S  V  A  F  D  V  S  C  I  I  E  M  T  Q  F  S  F  F  L  I  W  P  G  L  R  F  V  G  D  K  E  H  M  F  *  G  H  I  Y  F  L  P  L  A  L  D  L  *  Y  Q  F  F  L  *  N  L  *  L  L  R  V  I  *  N  S  R  W  E  A  C  I  M  M  K  R  A  R  I  L  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132631" stop="132458"/>
                    <exon start="128400" stop="128296"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKKEFTPMASGWGITGNKGRCYDFWMDFSECMSRCREPKDCVLLREDYFECLHHSKEYQRRNRIYKEEQRQLRAASQKKKEGVDGGGGGHH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132630" stop="132458"/>
                    <exon start="128400" stop="128355"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRRKSLLQWRLDGELQGIKDDAMISGWISVSVCLDAGSPRTVYFLEKTTSSVFIIPKSINVGTESTKRSSAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="138452" PGL_stop="137269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="138452" e_stop="137269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="138452" e_stop="137269" e_length="1184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138452" stop="137771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138452" stop="137948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138230" stop="137598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="138173" stop="137405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137610" stop="137269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAACGAAGCCAAAGCTTGCAGTATAAGATTGAAATTTGGGAATTGTGAATTTGGATAAACCCTAGATTGGAATCGATAGATTCTCTATCCATTTACGTAAAATTCAAGCTCAATTTCTACAGTAACGCCCAAATTCACTGCATTTTCTCTCTCATCCCCTATAAACTCGATGCAATTTCGCAGGTTCTACACCTCTCTAGCGAATTCTAACCGCAACCCATTTCTCCTATATCGAAATCTCACAAACCCTTTTGCTGTTTTCGACCCTAACCCACAGTTTCTCTCTACACAAAGAATCTTGAAAAACTGGGTTCAAAGGCCAATTCGTGTGTCGAAACGTTTTGTCTCATCATTTCCTGCTATGGCAGAAGGAAGAAGACCCACTCATGTGCCTATACCACCCCCAGAAACTGCTGATAAGGCGGAATTGTATCGAGCACTTGAGGCTGCGGTGGGGTCGCAGTTTAGTTCAGAGCCATTGGCACCGGAGCCTCATCCTTTGATTATTGTGGTTAGTGGTCCAAGTGGGGTTGGTAAAGATGCTGTGATTAAAAGGCTTAGAGAAGTTAGGGAGAATATTCATTTTGTTGTTACTGCAACGACAAGGGGGAAAAGGCCGGGTGAGGTTGATGGAAAAGATTACTTTTTTACGAGTAAAGAAGAGTTTTTGTCAATGATTGAGAGACATGAGTTGTTGGAGTATGCATTGGTGTATGGGGATTATAAGGGTATACCAAAGCAACAAATTAGGGATCATATGGCTAAAGGATTGGATATTGTGTTGAGAGTTGATATACAAGGTGCAGCAACACTGAGGAGGATTTTGAGAAATTCTGCAGTGTTTGTGTTCTTGGTGGCGGAGAGTGAAGATGCATTGGTTAAGAGGTTGATTGATAGGAAGACTGAGACTAAAGAGACTTTGCTAGTGAGAATTGCAACGTCTCGAGAGGAAGTGAGGCATATGGGGGAGTTTGATTATGTGGTAGTGAATAGAGAAGGAGAGTTGGAGAATTCTGTTAAGTTAATGGAGTCTATTATTGATGCTGAGAAAGCTAAAGTGAGGCAAAGAACAGTGACAATTTAGAGAGTCTGTTTTTCAGTTTTTTGATCTGTTTTTGATTAAGTTGAGCTGATACTCTTAATGTTGTCTTGTATTCAATTTATGCAACATTGTTTTTCCTA</gDNA_template>
            <first_frame> R  N  E  A  K  A  C  S  I  R  L  K  F  G  N  C  E  F  G  *  T  L  D  W  N  R  *  I  L  Y  P  F  T  *  N  S  S  S  I  S  T  V  T  P  K  F  T  A  F  S  L  S  S  P  I  N  S  M  Q  F  R  R  F  Y  T  S  L  A  N  S  N  R  N  P  F  L  L  Y  R  N  L  T  N  P  F  A  V  F  D  P  N  P  Q  F  L  S  T  Q  R  I  L  K  N  W  V  Q  R  P  I  R  V  S  K  R  F  V  S  S  F  P  A  M  A  E  G  R  R  P  T  H  V  P  I  P  P  P  E  T  A  D  K  A  E  L  Y  R  A  L  E  A  A  V  G  S  Q  F  S  S  E  P  L  A  P  E  P  H  P  L  I  I  V  V  S  G  P  S  G  V  G  K  D  A  V  I  K  R  L  R  E  V  R  E  N  I  H  F  V  V  T  A  T  T  R  G  K  R  P  G  E  V  D  G  K  D  Y  F  F  T  S  K  E  E  F  L  S  M  I  E  R  H  E  L  L  E  Y  A  L  V  Y  G  D  Y  K  G  I  P  K  Q  Q  I  R  D  H  M  A  K  G  L  D  I  V  L  R  V  D  I  Q  G  A  A  T  L  R  R  I  L  R  N  S  A  V  F  V  F  L  V  A  E  S  E  D  A  L  V  K  R  L  I  D  R  K  T  E  T  K  E  T  L  L  V  R  I  A  T  S  R  E  E  V  R  H  M  G  E  F  D  Y  V  V  V  N  R  E  G  E  L  E  N  S  V  K  L  M  E  S  I  I  D  A  E  K  A  K  V  R  Q  R  T  V  T  I  *  R  V  C  F  S  V  F  *  S  V  F  D  *  V  E  L  I  L  L  M  L  S  C  I  Q  F  M  Q  H  C  F  S   </first_frame>
            <second_frame>  E  T  K  P  K  L  A  V  *  D  *  N  L  G  I  V  N  L  D  K  P  *  I  G  I  D  R  F  S  I  H  L  R  K  I  Q  A  Q  F  L  Q  *  R  P  N  S  L  H  F  L  S  H  P  L  *  T  R  C  N  F  A  G  S  T  P  L  *  R  I  L  T  A  T  H  F  S  Y  I  E  I  S  Q  T  L  L  L  F  S  T  L  T  H  S  F  S  L  H  K  E  S  *  K  T  G  F  K  G  Q  F  V  C  R  N  V  L  S  H  H  F  L  L  W  Q  K  E  E  D  P  L  M  C  L  Y  H  P  Q  K  L  L  I  R  R  N  C  I  E  H  L  R  L  R  W  G  R  S  L  V  Q  S  H  W  H  R  S  L  I  L  *  L  L  W  L  V  V  Q  V  G  L  V  K  M  L  *  L  K  G  L  E  K  L  G  R  I  F  I  L  L  L  L  Q  R  Q  G  G  K  G  R  V  R  L  M  E  K  I  T  F  L  R  V  K  K  S  F  C  Q  *  L  R  D  M  S  C  W  S  M  H  W  C  M  G  I  I  R  V  Y  Q  S  N  K  L  G  I  I  W  L  K  D  W  I  L  C  *  E  L  I  Y  K  V  Q  Q  H  *  G  G  F  *  E  I  L  Q  C  L  C  S  W  W  R  R  V  K  M  H  W  L  R  G  *  L  I  G  R  L  R  L  K  R  L  C  *  *  E  L  Q  R  L  E  R  K  *  G  I  W  G  S  L  I  M  W  *  *  I  E  K  E  S  W  R  I  L  L  S  *  W  S  L  L  L  M  L  R  K  L  K  *  G  K  E  Q  *  Q  F  R  E  S  V  F  Q  F  F  D  L  F  L  I  K  L  S  *  Y  S  *  C  C  L  V  F  N  L  C  N  I  V  F  P  </second_frame>
            <third_frame>   K  R  S  Q  S  L  Q  Y  K  I  E  I  W  E  L  *  I  W  I  N  P  R  L  E  S  I  D  S  L  S  I  Y  V  K  F  K  L  N  F  Y  S  N  A  Q  I  H  C  I  F  S  L  I  P  Y  K  L  D  A  I  S  Q  V  L  H  L  S  S  E  F  *  P  Q  P  I  S  P  I  S  K  S  H  K  P  F  C  C  F  R  P  *  P  T  V  S  L  Y  T  K  N  L  E  K  L  G  S  K  A  N  S  C  V  E  T  F  C  L  I  I  S  C  Y  G  R  R  K  K  T  H  S  C  A  Y  T  T  P  R  N  C  *  *  G  G  I  V  S  S  T  *  G  C  G  G  V  A  V  *  F  R  A  I  G  T  G  A  S  S  F  D  Y  C  G  *  W  S  K  W  G  W  *  R  C  C  D  *  K  A  *  R  S  *  G  E  Y  S  F  C  C  Y  C  N  D  K  G  E  K  A  G  *  G  *  W  K  R  L  L  F  Y  E  *  R  R  V  F  V  N  D  *  E  T  *  V  V  G  V  C  I  G  V  W  G  L  *  G  Y  T  K  A  T  N  *  G  S  Y  G  *  R  I  G  Y  C  V  E  S  *  Y  T  R  C  S  N  T  E  E  D  F  E  K  F  C  S  V  C  V  L  G  G  G  E  *  R  C  I  G  *  E  V  D  *  *  E  D  *  D  *  R  D  F  A  S  E  N  C  N  V  S  R  G  S  E  A  Y  G  G  V  *  L  C  G  S  E  *  R  R  R  V  G  E  F  C  *  V  N  G  V  Y  Y  *  C  *  E  S  *  S  E  A  K  N  S  D  N  L  E  S  L  F  F  S  F  L  I  C  F  *  L  S  *  A  D  T  L  N  V  V  L  Y  S  I  Y  A  T  L  F  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="138350" stop="137367"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>981</number_coding_nucleotides>
                  <number_encoded_amino_acids>327</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSSISTVTPKFTAFSLSSPINSMQFRRFYTSLANSNRNPFLLYRNLTNPFAVFDPNPQFLSTQRILKNWVQRPIRVSKRFVSSFPAMAEGRRPTHVPIPPPETADKAELYRALEAAVGSQFSSEPLAPEPHPLIIVVSGPSGVGKDAVIKRLREVRENIHFVVTATTRGKRPGEVDGKDYFFTSKEEFLSMIERHELLEYALVYGDYKGIPKQQIRDHMAKGLDIVLRVDIQGAATLRRILRNSAVFVFLVAESEDALVKRLIDRKTETKETLLVRIATSREEVRHMGEFDYVVVNREGELENSVKLMESIIDAEKAKVRQRTVTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="159307" PGL_stop="163565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="159307" e_stop="159334"/>
            <exon e_start="159416" e_stop="159490"/>
            <exon e_start="162644" e_stop="162727"/>
            <exon e_start="162808" e_stop="163565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.719" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="159307" e_stop="159334" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="159335" i_stop="159415" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="159416" e_stop="159490" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.958">
            <gDNA_intron_boundary i_start="159491" i_stop="162643" i_length="3153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="162644" e_stop="162727" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.719">
            <gDNA_intron_boundary i_start="162728" i_stop="162807" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="162808" e_stop="163565" e_length="758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159307" stop="159334"/>
              <exon start="159416" stop="159490"/>
              <exon start="162644" stop="162727"/>
              <exon start="162808" stop="163177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162658" stop="162727"/>
              <exon start="162808" stop="163264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162658" stop="162727"/>
              <exon start="162808" stop="163264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162666" stop="162727"/>
              <exon start="162808" stop="163067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162716" stop="162727"/>
              <exon start="162808" stop="163565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAAGCGAGTTCTTTGATTATTTCAAA : GTTCTATGCATCCAAGGGTTTCTCACATGTCGGAAGCACGCAGAGCGTATAATTCTTCTTGTCGAGATGCTTCAG : GATTCTGGTTACCCTTGTTTCAAGGGTGGTCCCCGAACAATTCAGAACCTAAGAAAGAGATTTCATCTTAGTTTAACAGAAGAG : CAATGTGTTTCCTTGGTACTTTCTTTGATTAGCAGTAGCTTGGATGCGTGGCGTACTCGTCAATATGATTATTATCAGAGGGTCTTAAATGGGATATTATGAGGTCAAAGTGAGTTTATCCACACCGAAACGTGATTATACATGTGAAGAGAAACCGATCTTTAACTTGTTTGCTGAGAGGGGCTTGGTTGGGAAAGAGCAATTCACTATATGAACGTGTTCTTCTGATTCTGTCGAGGTTAAAGGATTGCTTGTCCTTTGCAGTTTGCTTCTCTTTCTGAGGAATTTGTAGTTGTACCTGCGAATGTTGTATTGAAATATACCAGGTGCAAGCTCTCTTCAAGAAGAGCTTTAATTTCTAGTTTCACTCAATTTTCAAGATTATTGGACAAAGGCATGGGTTGTCTTCAGTGAAGAGATTTGTCGAGTACACCCACCCACCCCGTGGGTACATACTGTACAGAGCTGTGTAAGAGATTGCAACAGTGGTGGCTTGCTGCCAGAACGCGAGAGACAGACAGACGGCTGTTGGTACCGTTTGAATTGAATCATGAGTATGCTGGTGCAACATGATATTTGGTTTGTACAATAGCTTATTTGCTTTGATTTTGTTTTTCATTTTCCCTTTTATTGTGTCAAAGGCATTATTTAGATTAGCAGTAGGAAAATTGCAGCCTGCTCTTAATTTTCAAGTCTTTGATTCTTTGTGTTCACCAGGAGATTCTGAAACAGCAGAGTTGTAATGTATAATATTTTTT</gDNA_template>
            <first_frame> S  K  R  V  L  *  L  F  Q   : S  S  M  H  P  R  V  S  H  M  S  E  A  R  R  A  Y  N  S  S  C  R  D  A  S   : G  F  W  L  P  L  F  Q  G  W  S  P  N  N  S  E  P  K  K  E  I  S  S  *  F  N  R  R   : A  M  C  F  L  G  T  F  F  D  *  Q  *  L  G  C  V  A  Y  S  S  I  *  L  L  S  E  G  L  K  W  D  I  M  R  S  K  *  V  Y  P  H  R  N  V  I  I  H  V  K  R  N  R  S  L  T  C  L  L  R  G  A  W  L  G  K  S  N  S  L  Y  E  R  V  L  L  I  L  S  R  L  K  D  C  L  S  F  A  V  C  F  S  F  *  G  I  C  S  C  T  C  E  C  C  I  E  I  Y  Q  V  Q  A  L  F  K  K  S  F  N  F  *  F  H  S  I  F  K  I  I  G  Q  R  H  G  L  S  S  V  K  R  F  V  E  Y  T  H  P  P  R  G  Y  I  L  Y  R  A  V  *  E  I  A  T  V  V  A  C  C  Q  N  A  R  D  R  Q  T  A  V  G  T  V  *  I  E  S  *  V  C  W  C  N  M  I  F  G  L  Y  N  S  L  F  A  L  I  L  F  F  I  F  P  F  I  V  S  K  A  L  F  R  L  A  V  G  K  L  Q  P  A  L  N  F  Q  V  F  D  S  L  C  S  P  G  D  S  E  T  A  E  L  *  C  I  I  F  F </first_frame>
            <second_frame>  P  S  E  F  F  D  Y  F  K  :  V  L  C  I  Q  G  F  L  T  C  R  K  H  A  E  R  I  I  L  L  V  E  M  L  Q  :  D  S  G  Y  P  C  F  K  G  G  P  R  T  I  Q  N  L  R  K  R  F  H  L  S  L  T  E  E  :  Q  C  V  S  L  V  L  S  L  I  S  S  S  L  D  A  W  R  T  R  Q  Y  D  Y  Y  Q  R  V  L  N  G  I  L  *  G  Q  S  E  F  I  H  T  E  T  *  L  Y  M  *  R  E  T  D  L  *  L  V  C  *  E  G  L  G  W  E  R  A  I  H  Y  M  N  V  F  F  *  F  C  R  G  *  R  I  A  C  P  L  Q  F  A  S  L  S  E  E  F  V  V  V  P  A  N  V  V  L  K  Y  T  R  C  K  L  S  S  R  R  A  L  I  S  S  F  T  Q  F  S  R  L  L  D  K  G  M  G  C  L  Q  *  R  D  L  S  S  T  P  T  H  P  V  G  T  Y  C  T  E  L  C  K  R  L  Q  Q  W  W  L  A  A  R  T  R  E  T  D  R  R  L  L  V  P  F  E  L  N  H  E  Y  A  G  A  T  *  Y  L  V  C  T  I  A  Y  L  L  *  F  C  F  S  F  S  L  L  L  C  Q  R  H  Y  L  D  *  Q  *  E  N  C  S  L  L  L  I  F  K  S  L  I  L  C  V  H  Q  E  I  L  K  Q  Q  S  C  N  V  *  Y  F   </second_frame>
            <third_frame>   Q  A  S  S  L  I  I  S  K :   F  Y  A  S  K  G  F  S  H  V  G  S  T  Q  S  V  *  F  F  L  S  R  C  F  R :   I  L  V  T  L  V  S  R  V  V  P  E  Q  F  R  T  *  E  R  D  F  I  L  V  *  Q  K  S :   N  V  F  P  W  Y  F  L  *  L  A  V  A  W  M  R  G  V  L  V  N  M  I  I  I  R  G  S  *  M  G  Y  Y  E  V  K  V  S  L  S  T  P  K  R  D  Y  T  C  E  E  K  P  I  F  N  L  F  A  E  R  G  L  V  G  K  E  Q  F  T  I  *  T  C  S  S  D  S  V  E  V  K  G  L  L  V  L  C  S  L  L  L  F  L  R  N  L  *  L  Y  L  R  M  L  Y  *  N  I  P  G  A  S  S  L  Q  E  E  L  *  F  L  V  S  L  N  F  Q  D  Y  W  T  K  A  W  V  V  F  S  E  E  I  C  R  V  H  P  P  T  P  W  V  H  T  V  Q  S  C  V  R  D  C  N  S  G  G  L  L  P  E  R  E  R  Q  T  D  G  C  W  Y  R  L  N  *  I  M  S  M  L  V  Q  H  D  I  W  F  V  Q  *  L  I  C  F  D  F  V  F  H  F  P  F  Y  C  V  K  G  I  I  *  I  S  S  R  K  I  A  A  C  S  *  F  S  S  L  *  F  F  V  F  T  R  R  F  *  N  S  R  V  V  M  Y  N  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0054I23.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="159308" stop="159334"/>
                    <exon start="159416" stop="159490"/>
                    <exon start="162644" stop="162727"/>
                    <exon start="162808" stop="162909"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGYPCFKGGPRTIQNLRKRFHLSLTEEQCVSLVLSLISSSLDAWRTRQYDYYQRVLNGIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 113 chains have been computed
$ 
$ memory statistics:
$ 120064 bytes spliced alignments in total
$ 58 spliced alignments have been stored
$ 2070 bytes was the average size of a spliced alignment
$ 27680 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1456 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 120 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 06:07:38
-->
