<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 06:09:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315184" ref_strand="+" ref_description="SGN-U315184        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA recognition motif (RRM)-containing protein, contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) | chr5:1323641-1325614 FORWARD | Aliases: T1E3.1(evalue: 1e-63, score=240) genbank/nr: RNA(evalue: 5e-98, score=360)">
      <seq>atcggccgaattgagcctatattcctgtgaccgccactctccgctttactcctcctctatatctttttccggcggccggcagctccttcttcagcttcgtgaattctgattgttttgacagagatgggtgccaaagggaggaagaaaagcataactaagaagttgaagaagggtgctaacgaattctcagcttcttcggtttctaaagataaagctgctgactttctgccattggaaggtgggccggcaagaaaactcccggatactgaagtacgggaaagtaaagcgacaatattgtatattggaaggattccacatggattttatgagaatgaaatggaaggtttctttaagcaatttggtacaattaagaggcttagacttgcaaggaataaaaagacgggaaaatcaaagcattttggcttcatagaatttgagtcccctgaggttgctaaagtggttgcggataccatgcataactatctattatttgagcacttgttgcaagttcgtcttattcctcctgagcatgttcatcccagattgtggaaaggtgtgaaccgctggtacaaaccgttggactgggttaaaattgaaaggaagcgtcaggacaaggaaagaacattggaagagcataataagttggttggagaaattctaaaacgtgacaaaaagaggcgaaagaggatcgaggcagctgggattgattacgagtgcccagaaatggtgggtgcaattcaggctgcaccaaagaagatcaggttcactgattagatctttataagtatagctcgtgaacgaaatagtatctatggcgacaagtagattactatgtgtatgcacggtgtaactgaagatcagctgaactgacagatgaacggccacattattttgctgcagagtaaactaatgatattgtcaaaggctcgtttagctatcgataactatggatttcttttattttgaaaattagaagagaaaaaagtggttgtataacttagaaaagacaaaggaagcccttgacaatttaatctattgattgtataccgtgaatccatctatcatctatttattgtaaagcattttgtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="8221" stop="1223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7917" g_stop="7825" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="108" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7824" i_stop="6841" i_length="984">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6840" g_stop="6721" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="228" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="5057" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="343" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4931" g_stop="4876" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="399" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4014" g_stop="3967" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="447" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106">
            <donor d_prob="0.390" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3860" g_stop="3763" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="545" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2993" g_stop="2924" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="615" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2741" g_stop="2631" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="726" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="2630" i_stop="1887" i_length="744">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="1886" g_stop="1524" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="1089" r_length="363" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1090" polyA_stop="1120"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-U315184" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1074</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7917" e_stop="7825"/>
          <exon e_start="6840" e_stop="6721"/>
          <exon e_start="5171" e_stop="5057"/>
          <exon e_start="4931" e_stop="4876"/>
          <exon e_start="4014" e_stop="3967"/>
          <exon e_start="3860" e_stop="3763"/>
          <exon e_start="2993" e_stop="2924"/>
          <exon e_start="2741" e_stop="2631"/>
          <exon e_start="1886" e_stop="1524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATATTCCTGTGACCGCCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTGGTAATTAGTTTCATCTATACTTATCTATAATTGCAATGAACAGAGCAAATTTAGCTGTGTTTTTAAAATTAGTTAAATTGATGCTATTCTTTTCGTTACCAATGTGAATAATTTTGGCTGTTTTTCATGGTTGTTTATGATTTTTACATGTTTATTTGAAGTCAGAATACATAAAAAGACACTCAAAGTCGGTTTCAATTGTCATGCAAACACTACATCTTTAGTATGCACGTCTATACATCTCAATCTGACTTTACTGTGGCAGTTGAACACTGTAGTTTTGTTACAAAATGATCATCTTGATACTTCCAAAATTTAGTGTAACGTCAGTGTGGGGTGTCCAGGAGACAGAGTGGGGAAGAGTTTGAGTGGTGTCCAGACTTTGTTATATCGAAGTTAAAGTTTGAGAGTTCTACATATTAATTTGAAGTTGTACTGGCTGTCCATTTGATCAATAGTTCTAAATTTGTGATCGTAGGATTTCTAATTTAACTCATGAATCTCTTTAGGTTGATCAAGGATTTTTATCTAGGTATGATTTGCAATTTTCTGGCTACCTAATAGTGGCTCTTTTTTCAACCAACAAAAGTTGGGGTTAGGCAGGTAGAGACGTACACAAACCTTACCCATACCTTGGGAGATATAGAGTTGGTTTCTGATACACCCTCGACTCCAGGAAATAGTGGCTCTTTTTTCTAAGTTTAAGATTTTACATGTGAATTCACATTTCTAATCGCTATCCATTCGATAAATAGGTCCATATTTGTGATTGGTTGTATTTCTAATGAAAATTTTAGGCAGACTAGGATTTTTCTATATAGGCAGAATTTGCATTTTCCTGGCTACCTATCCAAATAATAGTGGCTCTTTTGTCATTCTGTGATTTGCATTTTTACTTGCTACCCATGTGATAAAATGAGTCTAAAATGGTCAACATGTCATACTTCCTGTGTAAGTAATGAGTTTTCTTTTGTGTCTACCAAGATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTGGTATGTTTCTGGTATATTAAAGTTAGTAAAGCTCCTCAATGCTCAAGAAGTTCTTAGAATGAGAGAACCGTTTAGAACAATTTTTCCCTTCATGTTTTTAGTTTATATCTTTCCCTCTTTGAGCCAAAGGGTCTAGGAAACCGCCTCTCTACCTTCTCAAGGTAGGGGTATGGTCTGCATGCACTCTACCTTCTCACGACCTCACCTGTGGGATTATACTGGATTTGTTGTTGTTGTTTTTAGTTTCTTTCATATTACATGTTAGTTTGTCTTTTTGGTATATATGTTTGAAATGACTCAATGTGTGTTGTGATGGTTGGAAACTCTATCTATTTGGTTGTTGGGAGATCGTTAGAAGATGTTTGCTATGTAGGACTGGAAAGGGAACTTAAAGGAAAAAATGGAGTAACTGTTTTGTTGGCTAATAGTTTCCCAGACATTTGATGGAACTAGCCACCATTCTTAATTACTTATAGGTCAGTTCTAATAGAAGTAGCCTATATGCATATAATATCCTGGTAAAGCATGTAAAATCTTCATCTTACAATTGAGATAGAATTGTTGACTTTAGAACATTTGTAAAAGAAAAATAGTTTCCTGGTTCTCTAATAGTGCTTCATGATCTAAAACAAAAAGATGTAGTTGCATATAAGGCGGAGTACTTGGCACGAGCTGGCATGGACACCATTATTTTTTCAAAAAGAAGATATTATGTAGTACTTGAAATATTTTAGTTCTTTACGAGAGTGATATCATGTAAATTTTAGTTTGAAACTCTCACGAGAGATTCCTGATTAAAAAACATTTGGATATAATAATGGAAAACTAAATAGATAACTGAAACATCTTTAGAATAATGTATATCTTACTTTTGAAAAGAAATAGATAATTAAAACATTTCAGCATACATTAATTCAAAATTAGTATTCCCTCAGTTCCAAGTTATGTTGACACTATTTCTTTATTAGTTCATACAAAAAGATGACATATTCTATATATCAAAATAAATTAAATATGAACTTCCCTAATGAGAAGCTTCTATAGCCTCACAAATGTTATGCCATTTTTTTAGAAGGAAAGCAACAAATGCTACGGCATGTTTTTAAGACCACAAGTATCAAAAGACATATAGCCCCACAAATGTCATAGCATGTTTAAAAGTTAAAAACTATAAAATTAAAAAATCTTTCGTTCTTTCTTAGACTCCATTTCGAGTCAAGCTATGTCACATTAATTGGAACAAAGGGAGTAGCTGGTTTTAAGTGTCACTGAGCATGGGTCATGCTTTAATAGATGTGGCAATGTTGGTATGTGAAGTTCAGGCAATGGGTATCAAGTCATGCTCAATTGTTCTCCACATAGAAGAGTATGAGTTGTTTGGATCATATAAAAACTACATTGCGTGTGGTTCCTTTATCTTCTTTAGTAAACTATGGTATCTTTACTGTAGTCAATCAGCAGCTCTGTTGTATAAGAAAAGAAGAAAGAAGATGACTTTTTTTTCTCTGATGGCCTGCTTTTTCTGACTTGTTTTCCTTTTATGTAATAGCCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAGGTTTGCATTTCTCACATTGAGTTTTTACATCCCCTTTCTACAACTTTTTAGCTTTTGCATCACTTTGTAACACTACAAAGTTAAATAACTTTCGTTGTGCCATTTTCTGCTGATGTTGTCTTTAGGTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAGGTGAATACTCCTACTGATTCCTTATCTTTAATTAATCAGTTTACTTTGACATCTTTGTCTAGTTTTGTCTTCTTGACCTACTTTCATCATATGCTTGTTGTCGCAATCTGACCTATGTTGCTCGGACTCTTCAAATGTCAATGGGTGCGTGCCATATTCTCCAAAAGTAGTGTATTTTTGGAGAACCCGACAAGGGTGTGTCATTGAAAGTGAAGAATCCGCACAACTTATAATCTGACAACTTAAGACTTAGAAAGACCCAAGCTGGTTGGAATGGGCTCGCTCAAGTACCTAAAAGTGATGACAATTTTTTTATCATCTATGATTAGTCATAGTATTTAAAAACGGATAGCTGCAGTGACTTTAGAATTTAGAATGTGACATGTGGTGGAGCTTAACTACATTATGATTCTGCATGTGAATATTGATGTTCCCTATTTCCTGTCACATTTTCCAATAAAAAGCACGCCTTCACCAGATTTATTCTTCTTTAAAAAATAGAATAGATATATCTCTTCCATTCCTTATGGGATGTTTTAGTCTATCATTGGTGAAGTTAACAGATGCTCTGGACTTGTTAAGTTCCACGTTAAGATTGTGATATATATCTCTTCAAAGTATTTAAATTGTGGTCCAATTGTTGGAAATTACACAGAAATTCTTATAGTTTAGGCGTGACAAGAACACTATCCATAATTTTCAACAATATGGCCTCTGCAGTAAAGGGATTCGTGTTGGATATATTCTTCAATTTTCTAAGTCCATAATACACTTTTACTTTACTTAATTGTCTCTCTATGTGGTAATCTTTTGATTCTTCTCTTATTTCCTTTTTTTTCTTGTGTCTTTTCCTCATGACAGACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAGGTTGTTCCTATTCCTGAGTAATTTAGTTTACGCACCCATATTTAGAGAATCCATTTGGTCATTTTCTTCCCATTGATCTTTATCTTGGGTTTTTGGACAATTGCAGGTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATTGTAAGGGTTCCATTTTTTAAGCCAAATGATATTCATTTTAAAATTTCATATTTCTTGGGTTGCTTTTAAAAGTACTTTAAAGCTCTTTTCTTCTCGTTCCCCCCTCCCTTTTTTTTGGGGTTGGGTGGGTAGGGGGCTGATACAATAGTAAGGTACTACTAGTCTGGAATACTGTCACTTCGTATTAAATTGAATCTGCTCCCCTTCCTACTCCTTGCTTAGAGACGGTAATGCCTTGCAAAAGACTATCAGCTTGCTGAAGTGGTGGGTTGAATTGATGGAAAATAATCTTTTCTTAACGACTTAACCAAATGCTCTTGGTCTAAGATTCCAAGTGATATATAACTTTTACCAAGAGATGGATACGAGTACTACGGGGTTGAAATGCTTGAAAATTATCAATGGAAAAGACTAACCTGAGATATTCCACCTTCAGAAGCAACCTGATGACAATCAGCAATATTGTGGCTGGTTCAAGTGTAAACAGGGATGTATTTCTAAACTAGGGTCTAGAGAGTTCTCCTTTCTGAATAATCCCACTGACGTGTGGTTCCACAATGCCAGTTCTGCTCTATGGAATTTACCATTATGTTACATATAATGTTCTATACTAAATTTATGTCATTTTTCTTGCAAAATTTTTGTGCATTATGATTATGAGTGAGTTTGGTATCGAATAGTCTGATGCATATGTAAGTGGTGTCTTTAAGTTATCGTCTTTTTTCCTCCTCTTTTTAGGTACAGCTCTAATTTGTATATTTGGTTCTAGGTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAGGTAGTGTTTGATCTTGTATGTGTGTGATTCAGATATTTACATGATATGCAAAAAACTGAGAGACATTGCTTTTAGTTATATATGAACTCTCTATCGCTTTTCCATAATGGTGCAAAGTTTGACATACATGTTTTTTGAACTGGTTTAAATGTGAAACTTATGGAGTGATGATAATTATCCAGGAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATGGTAATAGCAAATGTTCTTTATTACATTTCACATTATTATCTTGTGCTGCAAATTCTACTTATTTATGCATGTTTACTAAACTGGTCTAGGAACTACCTGTTTGCTAATTTGACAATTACTTGGATAGGATTTCCATAACATAAGAAATGACTACTGTTTTTGAGCATGGTATTAAGGAAGGAAATAAGTACCTAACATGTCAATTAGAAGGAAGATCAACACAAGGTTGTTACATGCATATGCAGATAATTTCCTAGGCTATCAGAAAATTACAGAACATCCGAATTTAGTACTAGATTTAGATGACAGAATCCATCAAATTGAGGGATTTTCTTGTATAAACTCGAGGAAAAAAAACAAGTTCCATGAGAAACATACAACACTGCAAAAAAGGCATTATGGTTGACAAATCTGTTCTTAGATAGCCACATTTGTCAGAACCAAAAAGAGCATTTTAGACATGTGAGAGATAGCAGTACCTGATGAATAATCGGCTTGCGGACAAGTTGGACACGGCCATTATTTAAAAGAATAGGTTTCCAGACATGTTACTTAGTACATGAACAACTCTCTATGTTTTACAATAAAACTTTGCATGAGGACTCTTCCGGTCAAAAATGTAGAAACGAGGCCTCTGTTATTCGTCTAGCAGATGAAAAAGAGCAAGACAGTTGCAACACTTCTGAAATTACTCTTAAAGAGAAGCATAAAAGTGATTTTTAACATTTACAATGTGATTTGCAGGTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCGACAAGTAGATTACTATGTGTATGCACGGTGTAACTGAAGATCAGCTGAACTGACAGATGAACGGCCACATTATTTTGCTGCAGAGTAAACTAATGATATTGTCAAAGGCTCGTTTAGCTATCGATAACTATGGATTTCTTTTATTTTGAAAATTAGAAGAGAAAAAAGTGGTTGTATAACTTAGAAAAGACAAAGGAAGACCTTGACAATTTAATCTATTGATTGTATACCGTGAATCCATCTATCATCTATTTATTGTAAAGCATTTTGTC</genome_strand>
        <mrna_strand>CCTATATTCCTGTGACCGCCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG.............................................................................................................................GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG..........................................................................................................GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG......................................................................................................................................................................................GAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCGACAAGTAGATTACTATGTGTATGCACGGTGTAACTGAAGATCAGCTGAACTGACAGATGAACGGCCACATTATTTTGCTGCAGAGTAAACTAATGATATTGTCAAAGGCTCGTTTAGCTATCGATAACTATGGATTTCTTTTATTTTGAAAATTAGAAGAGAAAAAAGTGGTTGTATAACTTAGAAAAGACAAAGGAAGCCCTTGACAATTTAATCTATTGATTGTATACCGTGAATCCATCTATCATCTATTTATTGTAAAGCATTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342642" ref_strand="+" ref_description="SGN-U342642        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains eukaryotic protein kinase domain, INTERPRO:IPR000719 | chr3:19673262-19675481 FORWARD | Aliases: F8J2.200(evalue: 8e-72, score=267) genbank/nr: gi|45935137|gb|AAS79595.1| putative serine/arginine (SR) protein kinase protein [Ipomoea trifida] (evalue: 4e-73, score=278)">
      <seq>tttgattttttcgttgtagctcgccggtatcgattagtcggagtacggtggttgttggatctgccgatggcggaagaggaggagaggaacggcggtgagcggagtgagacgagtgactacacatcggaggatgaaggtactgaagattacaggcgtggaggttatcacgctgttcgaatcggagatacattcaaacaaggacgatatgtagtgcagagtaagcttggttggggacatttctctactgtttggctcgcttgggatacgcaaaaatctaggtttgttgctctaaaagttcaaaagagtgctcaacattatacagaagcggctatggatgagattaccatattaaagcagattgcagagggagatccagatgataagaagtgtgtggtgaagttattggatcactttaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="20746" stop="26703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21046" g_stop="21321" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21322" i_stop="26260" i_length="4939">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26261" g_stop="26403" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="419" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-U342642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21046" e_stop="21321"/>
          <exon e_start="26261" e_stop="26403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTTTTTCGTTGTAGCTCGCCGGTATCGATTAGTCGGAGTACGGTGGTTGTTGGATCTGCCGATGGCGGAAGAGGAGGAGAGGAACGGCGGTGAGCGGAGTGAGACGAGTGACTACACATCGGAGGATGAAGGTACTGAAGATTACAGGCGTGGAGGTTATCACGCTGTTCGAATCGGAGATACATTCAAACAAGGACGATATGTAGTGCAGAGTAAGCTTGGTTGGGGACATTTCTCTACTGTTTGGCTCGCTTGGGATACGCAAAAATCTGTGAGCATTTCTACACTATCTGCTTACATTTTTCGTGGTATTAATTGCTCTGCAATAGCTGTCGTGTTTGCTTGTTTTGTTTAGCAACTTACTGTTTACTGTTAACAGATTTAGTTTTTGGACTTGTGATTTTGGTGTTTGAGTTTTTCTATGTTTGCGCGTGTGTTGTGTGTGTGAGAGAAGATACTTTGATATAGTAATTCGATATAGTAATTGTTGTCTGTTTGTAATTTCTATATACTTCTATGCTGCAATTGTTGTATTATTTGTTCGTTTTGTTTACTAGTATAACAATTTTTGCATCTTTGGACTTGTGATGTGTGAGAGAGAGGAGATACTTTGATGCAGTACTTGTTATCTGTTCACAGTTACAATATATTTATAAATGCTGCTATTGTTGTATTATTTGTTCATTCATTTAGCAACTTATTGTTTACTAGTGTAACAATTTTTGCATTTTTGGACTTGTGAGTTTGGTGTTTTAGTTTGACTTTGTTTGCCTGCATGTGTATGAAGACGAGATACTTCGATATATTACTCGTTATCTGTTCTCATTTTTGATACAACTGTGATGCTAAACTTGTTGTACTAGTATTTATTGTTCAGTTTAGCTATTTATGGTTTATTTTAGCAGCTTCCACATTTGTGAGTATTTCTTTTTTTTGAAATTGGTAACTGTTTCTATTGCTTTAAATCAGTACATGGGTTGTACTGCAAATCATATCTATATAATGAACTCTAAAGGCACTGTCCTATCCCTATAATGAGTAGATCTGATGACACCAACAACACAAAGTTAGAATATAATTCAGTTTTACTTGCTGCATATTACTCTCCCGATTCTCGGAAACTCTAAATTTCTCTCCTTCTAGATAGCACACCAAATTGTAGCAGGAAGGAAAGAATGTTTCTCCAGTTGCTTCTGTTCTTTGCTTGTAATTCTGCTTCTTTTCAACTGTATAAGGCCTTTGCCATTCTACCTGGCATGACCCATGAGATGTTTTTGAGCCTTAGGAATAGACTCCACAATTGGCCAATGACCTTGCACTGGATGAACAAGTAATTGACTGTTTCTGCAGTTTCCCCGCCGGAAAAACATCTAGAGCAAAGTGTAATCCCCCTCTTCATCAAATTCTCCTGTATCAACACAACTTCCTTAGCCAGTAACCACACAAACCAACCACTTTGTGTGGGATCTTGGCCTTCCAAATGTGTTTCCAGACCATTTGCGTACCTGCATAATTGGTTGGTTCAACTTCCTATCTTTTGCACTTACTTTAAAAGTTCTTTCACAGTTCCGTAACCACTGCAATCTGTCCTGCCTGTCTCCAAGACACTAAATTGTTCAATGACGCTAAAGAATTATGTTACTCTTGGAATTTCCCAATCATTGAGGTGCCTTCTAAAATATAATATTCCACCCATGAGGTGTCCTTAGTTCAGCTAATGTACTTTGTTGTTGAAGTACCAGAGTGTAGAGTGTGTATATCTGGGAGAAGTGTCTCTAGATTTCTTGCATCATGCCAATCCTACTTCCAAAATCTAGTTTTGGCGCCATCTACCACTTTAGTCTTGGTGTTTGGTTTTGAATTCATCCCATAGTGATTGTACGGATTTGCATAAACTAACACCATCGGGTGTGGTAACTTTCTTCGTCATCTAATTGTCACTTTCTTCATATTTTGCTTTTATGTTTGAGCCCTATAAATTCTGATTATCGTCGGAATACCTCTAAAGCCACGTCATTGTCAAAGCGTTATTTTGATTCTTTAGGTTCTTCATTCCTAAGCCACATTGTTTTGGATGGCAAAAGGCGACAAGGGCTTGCCTTGCCACGAGGCGAGGCACTCACCTTTTTGAATTAAGGCGCAAATTAATACGAAAAATTTATAATTTTAATTGCATGTATAAATATCCAAAATCTTAATAGCAATAACATATATTAGCAAATATTTCATTTCAAAAACTAATCGTAGATACTAAAAGTCTAGAACTTGAATGTCTCAAGAATTCCCAAGACAATTGACAAGCAATACTAGAACTCTAAACGTTTATTCTTCTTTAAGATTATCCAAATCTTGAAGATCAACATCCTCTTGATCATGATTATATTGCTCCTCGTCTTCTTCATTAATTAGTGTCTTCATCAATTAGTGTTTGGGTCCTACTTGAACTTCTAGATGCAATTTGTACTCCTTTGCCCTTGTCAAGTTCTCTTAATCTTAAGAAATTTCCCTAAGATGATAGATACTCTCGTTAGCTCCAATTGCATAGCAACACTACCCCAAGTAAGATCAGCTTCCTCATATATTGGTTCATCTTCTTTGTCTTCGGAGCATCCAACTAAACATTCATCTGACTCATCAATATTATCCAGGAGAATTGGATCAATGGTGTCACAAGCATTATAACGACTTTTCAATGTTCTATTGTACTTAATGTACACTAGATCATTGAGACGCGATGGTGCAAGCCTAGGAATGAATCTGCGCATAAGTTACAAATATTAACTAATAGATACTAATAATAATATAATATGAAAATAGGATATAAAATATTTTTCTTACGTGTTTAAACGCACTCCATGTTCGCTTACATACGGATGAGCTACAAGTTAAACTTAATACTTTCATGGCAAACTTTTGCAAATTTGGTGTTTGACTACCAAATAGTGACCACCATTCAACTTTTAAAAAATAAATTTTAAGGTTAATGAGTATAAATAAGTCAAATAATTTAGGTAAATCTATAGTATAAGGTATAAACTGTAAAGAGCTAAGTAAACTCACTTACCCGGTGACCTTGTGTCTCCGGCTCTTCGAGCCTGACCACAACCAAATAGTCCATTGCCATTTTGTACTTGAGAATCTTAGCTACTAGTAAATCTTGTATTGCTATATCGGGATTCATCTTCTCAAGACATGCATGATAATCTTGTATTGTTGGACAATCATTTATTAACATTGAGAAGCTGACCGAAGATATGCAGAACTGATGCATCGTCTCCATTTGAGACCAAATCCCATCTTCTCTAGCATACCCATATCCCAGTTGACATGGTCATATGTTTCTCAATATCTAATTTGCATAAAATGCCTGTTTATTTCAAACTTGACCGGGAATCTATAGCTTCAGTAGGTATTAGAACAACATCCATGATCTGCCTCCCCTTAATAAAAGCTAACTGTTGTGAGTTATAACAAGTTTGGACATCACTCTTTTTAGCATTTCGATGAGCACTTCTGTGAGAATTTTAAAGATGCTGCCCATCAAACTGAAAGGTCTAAAGTCTCTTAGTTCTTTAGCACCTTTTTGGAATCAGGGCTGTGAAGATAGCATTGAAACGTTTTTTGAACCTCCCTTGGTCATAGAAATGCTGAAAAGTCTTCATACTCTTGACCACTTCCCGACATTTGATGTAGAACCCCAATTTAAAGCCATCTGGTCTTGGTGCTTTATCCACTGCACATTGCTTTAAACTTCTCGTAAACTCCTCATCAAAATTTCTTTCTAGGTAATCCATTATCCCTTCTTTTGCTCCACTGGCCTCCAAACATGCCATTTTGACCCATCTATCCCCCACAAAGCTGCCTTACAAGTTACAACTCAGTGATATCCCCCTGTAATCTGGTTTCTTGTAGACAAATGATGTCAGCTTTCCAGTCCCCCATAATGTTCTTGATAACCTTCCTCTTTCCAGACCCATGTGAGTATTTCTAAACTTACATGTTCACATTTTTTATATACTTATTATGCTGCAATTACTGTAGTATTTGCTTGTTTTATTTAGCAACTCATAGTTTCTTGCAACAATTTTTGCATCTTGAACTTGTGATTTTGTTTTCTTCTGTTTTTTTTTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGGAAATACTTCGATAACTTGCTATCTGTTTGACATAGATGTGATGCTGCAGTTGTTGTACTAGTATTTATTGTTCAGCTGAACAATTAATGGTTTATGGTAACAACTTGCACATCTGTGAGTATTTCTAAACTATCTGTTCGCGTCTTGTATATACTTAATATGCTGCAGATGTTCTAGTGCTTCTTTGTGTTATTTTTCAAAGTATACTAGTATAACATTTTTTTTGTATATGGACTTGCGTATGTATTGTTTGAGTTTTTCTCTGCTTGTGTGTGAGAGAGAGAGGAGATACTTCGATATAGTACTTGTTATCTATTAGCATTTTATACGTATCTATTACGCTGCATTTGTTCTTTTTATTTTGTAATATATTGTTTGCTAGTATAATAATATTTTTGTATATGGACTTTCGTATATAGTGTTTTTGACTTTTTCTCTGTCCACTTGTGTGAGAGAGGTGATACTTCGATATAGTACTTGTTATCTGTTTGCATTTTCTATATACTTATTATGCTGCATTTGTTCATTTTACTTAGTAACCTAATGGTTACTAGTATAACAATCTTTTTTGTATATGGACTTGTGTATATAGAGTTTGAGTTTTTCTCTGTATGCGAGTGTGTGTGAGAGAGGGAGAGATACTTTGATATAGTACCTATTATCCGTTCACATATTCTATTTACTTATTATGCTGCATTTGTTCTAGTATTGTTATTTTATTTAGCAATGAATTGTTTAATAGTATAACAAATGTTTGAGTTTCCTCTGTCTGCTTGTGTGTGAAAGAGGAGATACATTGATTTAGTACTTGTTATCTGTTCTCATTTTTGACGGAGATGTGATGCTACAGTTATTCTAGTTATTATTGTTTGGTGTAGCAACTTATGGTTTATTGTAGTGTTTACTGTTTGGTGTAGCAATTATTGTAGTGTTTATTGTGCACTAGTGTTTACGGTTCTTATGAATTTTCTGTGGTTTTTGCATAAAATTCTCTGACATGTGGATTGCCTTAGCTAATTGTTGGTTATGTCTTGTGAGGGATAGAGGTTTGTTGCTCTAAAAGTTCAAAAGAGTGCTCAACATTATACAGAAGCGGCTATGGATGAGATTACCATATTAAAGCAGATTGCAGAGGGAGATCCAGATGATAAGAAGTGTGTGGTGAAGTTATTGGATCACTTTAAGCA</genome_strand>
        <mrna_strand>TTTGATTTTTTCGTTGTAGCTCGCCGGTATCGATTAGTCGGAGTACGGTGGTTGTTGGATCTGCCGATGGCGGAAGAGGAGGAGAGGAACGGCGGTGAGCGGAGTGAGACGAGTGACTACACATCGGAGGATGAAGGTACTGAAGATTACAGGCGTGGAGGTTATCACGCTGTTCGAATCGGAGATACATTCAAACAAGGACGATATGTAGTGCAGAGTAAGCTTGGTTGGGGACATTTCTCTACTGTTTGGCTCGCTTGGGATACGCAAAAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTGTTGCTCTAAAAGTTCAAAAGAGTGCTCAACATTATACAGAAGCGGCTATGGATGAGATTACCATATTAAAGCAGATTGCAGAGGGAGATCCAGATGATAAGAAGTGTGTGGTGAAGTTATTGGATCACTTTAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336743" ref_strand="+" ref_description="SGN-U336743        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains eukaryotic protein kinase domain, INTERPRO:IPR000719 | chr3:19673262-19675481 FORWARD | Aliases: F8J2.200(evalue: 3e-87, score=318) genbank/nr: gi|15010662|gb|AAK73990.1| AT3g53030/F8J2_200 [Arabidopsis thaliana] gi|27777710|gb|AAO23891.1| At3g53030/F8J2_200 [Arabidopsis thaliana](evalue: 2e-85, score=318)">
      <seq>aacaacagatggaacaagggatggacagcagagaactcaaagatctaaaagaggcagtcgatccatgaggcagaaactattgactgatgtggaccttaggtgcaaattagttgactttggcaatgcatgctggacgtataaacaattcacaagtgatatccagacaagacagtatagatgtcctgaggttatcctaggatctaaatattctacttcagctgatctttggtcctttgcttgcatttgctttgagcttgccactggtgatgttctttttgatccacacagtggtgacaattatgacagggatgaggatcacttggcccttatgatggagcttcttggaatgatgccacgcaagattgccttaggtgggcgttattcacgagagctcttcaaccgaagtggagacttgagacatatcagacgattgcggttctggcctatgaataaagtgcttagggaaaagtatgagttcagtgaacaagatgctcatgaactggctgatttcttagttccaatacttgattttgtgcctgagaaagacctactgcagctcaatgtctcaatcatccatggattgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="26629" stop="29987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26929" g_stop="27241" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27242" i_stop="29296" i_length="2055">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29297" g_stop="29344" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="361" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29345" i_stop="29460" i_length="116">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.011" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29461" g_stop="29687" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="587" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-U336743" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26929" e_stop="27241"/>
          <exon e_start="29297" e_stop="29344"/>
          <exon e_start="29461" e_stop="29687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAGATGGAACAAGGGATGGACAGCAGAGAACTCAAAGATCTAAAAGAGGCAGTCGATCCATGAGGCAGAAACTATTGACTGATGTGGACCTTAGGTGCAAATTAGTTGACTTTGGCAATGCATGCTGGACGTATAAACAATTCACAAGTGATATCCAGACAAGACAGTATAGATGTCCTGAGGTTATCCTAGGATCTAAATATTCTACTTCAGCTGATCTTTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCACACAGTGGTGACAATTATGACAGGGATGAGGTATAGCAACTCTACTTTCAATATTTTAACCACTTAGATGCAAGCATGTGTAGATCGTTATTTTAGGAGTTAAATTATTATTTGATTTCATTATTTTCTAAATTAATGAATTAAGTTCAAGGAAAGGAAAGGAAAGGAATCGTTTGACAAGATATATGTTCCATTCTGTGTTTGGGTTTTGTACACTTGATGTGTACATGTGATACCTATTTCTGGGTGCTCAACTGCTCATTCTTCTAAAACATTGATTTTAAAAACAATACCTCTTCAATGGGATATAACTTCAGCTGTGGTGAAGGGGATGGCATTTATCCCTGATGATACCACTGGAACAGAAGTAAAGAGACAATGACTTGATTTGATCTGCCAACTTGTGTGGTGTCAAAATCAATCATCCGATCAATCCAGTCTTGCCAGGGCAAACTGGAAGCGCATGTAAGCCTTAAAGTGAGGCTCAACATAGACTTGGTGTTTCAGTGGCTTAGGCGAAATGCTTTTGCGAAACTGCTAAGAGGATGAGGTGTTTATCTTACCTAAAACATTGCAACCAGCTATTTTCAAATTAGATTGTTTTACAAGGTTATCTTGAGAAAAAGCAATAGTGAAAGACAGAATAGTTAGCAAAATGATATATTAATTGTTAATTATACTTTTTGGATATATATATTGCTTATTAGGTACTATAGAATATTAGAAATTTACAAAAGAAAGCTAGACATTTGATTTGAATTAGAAACTTAGTTGCAAATTGCAGATGATACATAAATTTAATATGGTATTTGAACATTACTGATGTATTCATTGCAGTTAGTCAATTCATCCAGCCATATAATTCTTGTTTTTGTGTAAGCATATTTCTTTCTATTTAAACCTCATGTTTTAATTATGCTTGTACTTAAAAAGCATTTGTGTCTTTGCGCTTTACACCTTTGACAATACTGAATCAGACAATTATTGAGTCCCAATCCCAAACTAGTTGGATCAGCAATATAACCTTTTTTTGGTTTGTGCAATTTGTCAATAGCTTGGGATTGAGGTGTGGTTGTTGCTCTATTTGTAAGTAGGTGTCTTTCAAAGCCTTCACCCCCAAAAAGAGAGTGTTTGTCTTTTGAGTCTAAGAGGGGGTTTCTATGTTATCCCTAACTCAGACCTAAAGTAAGAGTAACGACAACAAAAACTTATTCAACAAGTTGGGCACTGCCTATATGGATCATTTGTTTATAACCTGTTTGATTCTTAGCCTATCTCATCCGTTTGTAGCTCCTTCAATTGCCATAGTGTTGCACCTATGAGTTGGTGCATTTGGAGGTATAGGTAGGATATGATGAAACTATCTTATGTGATTTCCCTAGTTTTATACGTTGTGTGTGCTACTTATAGCTTGTATTCAATATTGTAGATGTCATATCAGTTTTAATATCAACATTTCTATGACACTCATCTTGGGAACTTCATGCTCCTGCATATTTACTTGTATTTCTCTTTAACCAAAATGTTGTAAATGTCCTCAACTTTAAATAAACATAGAAGAGTTAAAGTTGGGAAAATGAAACCTAAAATGGAGAATATGGAATGCATTTGTGGTTTCAAATTATTACTTCAGTACTCCTATGAATATGCAAATTGTGTCTTATCTCTCTGAAATATGTTCTTCCTATGCTTCCTAGATGTCATTACTGTATATTATTGACCCTATCATAGTTCTGAGGCTTGCCTGAATAGATTGTTGGGAGTACCAGCTAAGCTATTAGTCTTCGGGGATCTTTTAATTGATCAGTTCGTTGAGTTTGTGGATGGTGAAGCAGTCACTTTCTTAGTGAATCACAGTATACTTTCATCTGTTTTAGATTAATGCCAACATTTACATGTCACTCTCATGGCATTGAGTCTTGTTACTGACATTCACATGATTGCATATAAGTTAGTACAAGACCAGTTCTTTTTTAGTTTTTGGCAGGTTTTGTTCATTAAGATATTTTAAATAATTTTGTAGTTTAATGCCTTCAATAGCGGGTTCAGTTCAATGATATTTTCTTTGTTGCCCTTTCTGCGCAGGATCACTTGGCCCTTATGATGGAGCTTCTTGGAATGATGCCACGCAAGGTGATTTTTGGTTTCTGGTTAATGTCTTTCTTGTTGAATTAAAAAAAAGGAAAAGAGAAGTAGGAGAGTGAATCTTGTCATTCAAAGAGGAGAAGTGATCTTAAGTTTGTGTGCAGATTGCCTTAGGTGGGCGTTATTCACGAGAGCTCTTCAACCGAAGTGGAGACTTGAGACATATCAGACGATTGCGGTTCTGGCCTATGAATAAAGTGCTTAGGGAAAAGTATGAGTTCAGTGAACAAGATGCTCATGAACTGGCTGATTTCTTAGTTCCAATACTTGATTTTGTGCCTGAGAAAAGACCTACTGCAGCTCAATGTCTCAATCATCCATGGATTGCTGA</genome_strand>
        <mrna_strand>AACAACAGATGGAACAAGGGATGGACAGCAGAGAACTCAAAGATCTAAAAGAGGCAGTCGATCCATGAGGCAGAAACTATTGACTGATGTGGACCTTAGGTGCAAATTAGTTGACTTTGGCAATGCATGCTGGACGTATAAACAATTCACAAGTGATATCCAGACAAGACAGTATAGATGTCCTGAGGTTATCCTAGGATCTAAATATTCTACTTCAGCTGATCTTTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCACACAGTGGTGACAATTATGACAGGGATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACTTGGCCCTTATGATGGAGCTTCTTGGAATGATGCCACGCAAG....................................................................................................................ATTGCCTTAGGTGGGCGTTATTCACGAGAGCTCTTCAACCGAAGTGGAGACTTGAGACATATCAGACGATTGCGGTTCTGGCCTATGAATAAAGTGCTTAGGGAAAAGTATGAGTTCAGTGAACAAGATGCTCATGAACTGGCTGATTTCTTAGTTCCAATACTTGATTTTGTGCCTGAG-AAAGACCTACTGCAGCTCAATGTCTCAATCATCCATGGATTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336270" ref_strand="+" ref_description="SGN-U336270        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tttttttttttttaacgtaaagataagtgttttctaaaaggggtaattattctaaatatcattattgtcaacacttggctaggaaagaggaaatgatatgagaagtcttctcaaatggcacacttgttcaacttactcgccactagcatatactgtgttcaaagccagcaacatgcacaatgacatttcacacgtaaggcatgaagagggtggtttacatagcctcaaacaaagctagagattctctttttgatatattctcagctcatatataagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="30166" stop="31037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30458" g_stop="30737" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-U336270" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30458" e_stop="30737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCACGTATATAACGTAAAGATAAATTTATATCAAAAGGGGTAATTATATCAAATATCATTATTGTCAACACTTGGCTAGGAAAGAGGAAATGATATGAGAAGTCTTCTCAAATGGCACACTTGTTCAACTTACTCGCCACTAGCATATACTGTGTTCAAAGCCAGCAACATGCACAATGACATTTCACACGTAAGGCATGAAGAGGGTGGTTTACATAGCCTCAAACAAAGCTAGAGATTCTCTTTTTGATATATTCTCAGCTCATATATAAGCTTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTAACGTAAAGATAAGTGTTTTCTAAAAGGGGTAATTATTCTAAATATCATTATTGTCAACACTTGGCTAGGAAAGAGGAAATGATATGAGAAGTCTTCTCAAATGGCACACTTGTTCAACTTACTCGCCACTAGCATATACTGTGTTCAAAGCCAGCAACATGCACAATGACATTTCACACGTAAGGCATGAAGAGGGTGGTTTACATAGCCTCAAACAAAGCTAGAGATTCTCTTTTTGATATATTCTCAGCTCATATATAAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317762" ref_strand="+" ref_description="SGN-U317762        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | magnesium transporter CorA-like family protein, weak similarity to SP:Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein; supporting cDNA gi:12007446:gb:AF322255.1:AF322255 | chr5:7627653-7631371 FORWARD | Aliases: MRN17.6, MRN17_6(evalue: 6e-44, score=176) genbank/nr: gi|18420608|ref|NP_568424.1| magnesium transporter protein (GMN10) [Arabidopsis thaliana](evalue: 5e-42, score=176)">
      <seq>tgaccttccactcaactccacataactttgttaatctcatattgttttacagaactcgcttttactttggtaggcatcttatagttgcatatgccaatattgtggcaccttcagtatgatcattctagtttaatcatgtgttacagctttcctattatgcttttctcctgcacactgaacctagatatcttgattttttgcatttaggcactacaatccctttagttccacttcaactcatttttcttatgggagctaaacctaaagtacatatcttttgccttcacttctaattattctaaaacccttgctctctagagtgcataactaactttttaaccactgcactaatattttcttcactatcattataatataaatatgtcaaaattaacttaaactccataaactaggtcagaccaatagataatatctacaaatgtgaagaagaaaagaaattggaaaaataagataaattggtccttattagacacgaagtatcaactctgtgactcgattgattatgcaagtgtataactgagtaggagttatgattatattcttataatagaatacaccaccaacatatctagtgtagtctcacaaacagtgtttgaggagggtagagtgtacgtaaaccttaccccttatcttgagaggtagagatattgtttcctatagatcctcgcctcaaagaaaagcgtatcaaagaagatcggaaacataaataacgaagtgaagaaatcataggaaagcattctgaagaaagaacagtaattacaacaaaatagtgtgataaccgcagtacaagagacagtgaatagtgatagataagaacctggagagaaactgcatacgctatccttgaagtgcattgaaggtaatctttaagtaatccacttttttcttatacataccactcacacttcctatattttgaattttatattcatggcaaattatatgacagttagagcatagtggtccaaacaataaaaaatttaaaagcaaataatcaaatttttggtccacaataaagcatttttttatgatcatatagaaaatcttgagccatcctttcctgatttgtctgtactaaatattagtttggtaagttactgaaacaggtttccatttgttcatccaactgcagatgtgaatcttgccatggtcaagctgaaaggctccttgattctgcaaaagaaatggaagactcaattgctgtaaacttgagttctcgaaggcttgaggtgagcagatttgagttgattctacaggttggaacattttgtgttgctgttggtgctctggtagcaggtatatttggcatgaacttaagatcctatctagaggaacatgtgtttgcattctggcttacaacagcaggaataattgttggggctgttctggccttttatctcatgtactggtatctcagaacgaggaaaatactgtaaacaacgcctgattccacaatcaggtgatgtaaatctttaaccaagattgagctttcaactgcagtgggtgcccaaaaagatgccgcatatactagcatattctgcagcatgtctggatagtaggatcattgtgcatcaatatgatgcttcgcagacactgccaatataatggcgaaaacaacaaaattaggtatgcaatatgtccccagtcaagatccgtagaatgagagagaaggcgacaatctaatcttcctcaagttatataccatgggtgccaattaggagtagccatcactctcttttaccagcttgttatgtagtctagcataatctcccaccacacgttgccaagacattcagacagcgaagatattgcgtccgtaaaagcttatatatgagctgagaatatatcaaaaagagaatctctagctttgtttgaggctatgtaaaccaccctcttcatgccttacgtgtgaaatgtcattgtgcatgttgctggctttgaacacagtatatgctagtggcgagtaagttgaacaagtgtgccatttgagaagacttctcatatcatttcctctttcctagccaagtgttgacaataatgatatttgatataattaccccttttgatataaatttatctttacgttaaaaaaaacgtggcctataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="35286" stop="30166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34986" g_stop="33753" g_length="1234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1234" r_length="1234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32843" g_stop="32761" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1235" r_stop="1317" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31820" g_stop="31777" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1318" r_stop="1361" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31670" g_stop="31552" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1362" r_stop="1480" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31551" i_stop="31098" i_length="454">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31097" g_stop="30471" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1481" r_stop="2107" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2124" polyA_stop="2135"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-U317762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2107</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34986" e_stop="33753"/>
          <exon e_start="32843" e_stop="32761"/>
          <exon e_start="31820" e_stop="31777"/>
          <exon e_start="31670" e_stop="31552"/>
          <exon e_start="31097" e_stop="30471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCTTCCACTCAACTCCACATAACTTTGTTAATCTCATATTGTTTTACAGAACTCGCTTTTACTTTGGTAGGCATCTTATAGTTGCATATGCCAATATTGTGGCACCTTCAGTATGATCATTCTAGTTTAATCATGTGTTACAGCTTTCCTATTATGCTTTTCTCCTGCACACTGAACCTAGATATCTTGATTTTTTGCATTTAGGCACTACAATCCCTTTAGTTCCACTTCAACTCATTTTTCTTATGGGAGCTAAACCTAAAGTACATATCTTTTGCCTTCACTTCTAATTATTCTAAAACCCTTGCTCTCTAGAGTGCATAACTAACTTTTTAACCACTGCACTAATATTTTCTTCACTATCATTATAATATAAATATGTCAAAATTAACTTAAACTCCATAAACTAGGTCAGACCAATAGATAATATCTACAAATGTGAAGAAGAAAAGAAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTATAGATCCTCGCCTCAAAGAAAAGCGTATCAAAGAAGATCGGAAACATAAATAACGAAGTGAAGAAATCATAGGAAAGCATTCTGAAGAAAGAACAGTAATTACAACAAAATAGTGTGATAACCGCAGTACAAGAGACAGTGAATAGTGATAGATAAGAACCTGGAGAGAAACTGCATACGCTATCCTTGAAGTGCATTGAAGGTAATCTTTAAGTAATCCACTTTTTTCTTATACATACCACTCACACTTCCTATATTTTGAATTTTATATTCATGGCAAATTATATGACAGTTAGAGCATAGTGGTCCAAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAGGTTTGTACATGTCTTATTACTTTTCTCTTAGCTCTTTATCCTTGTGTTGGTGAACTGGGTGATGTAAAGTTGAAAAGCGATAACAGTGCATATGTAGGGAAAATTGGTCTAAGTTGCTCTCGTTTATTTGGAGAACTCTTCTATTTAATTTCATCCCCTGAACTTTCTGAAACAGTTCTCATGCTTTTAGAAACACACTGGAAAGACACGTTATAAGCTGGTTTCTTTCTGCAGATAAATTTAGTGTCAGGCAGAAGTATCGATGGCCTGCTAACAGATTCTGCTAGCGTTCTTGATCAGTGAGCCGTTTGTTTTAGTTGTGAGGATGAGACATCAACCAAAGAAAAAACTAGGGCATTAAAAACTTCTATATATGACTTCACAAACGAGAACTTGTACTGAAATTTCAATGAGTGAATGTGTACTTTGTCTTGATAAGAAGAATAACTGTGTAAGAAACTGATAATCCCACAAAAGATGAAAAAAGTATTTAAAGAACAGAGTAAGAGATAAGTAGATGAAAGCATGTAACCATAAATTCCATACTGTACATTTGATAACCTTTTTCTTTCAAGTTTTGGTGTGATAAGTTGTGCTGTACCTTGACTAAACAATATTTAGACACGCTTTTACTGTAGAAAAGCAAGATTCTTTAGCTAAAACTTCTAAGATTTCTGGATATGAATGCATACAAGAAATCAATGAAATATCTACTAAGGTTGTCGATGATGATTGACAGATCAGTTAAAAGCTTGCAACTCAAACAAGATTATCAGATTTTTCAATTGGTGAATGTGTACTTGATTTGGTCGTGTTTTGACTCCTTTGTGGTCTACTGATGCATAATTATGAAATATCATAAGTGGGCAGACTTGATTTTAATGTAAATTTTTTGCTTGTCCTTTTCAGTTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAGGTATTTGTACAACTAATATAAACAGAAAACAAGCTAAACATATCCAGTATTTTCTTCTTTGATATCTCTTCATGAGAATCAGTTGTTGCCACTTAGTTTTGTCTGCTCAGACATTTTTTGTGATGCATGTGTCCAACTTCGTAATTCAAGTCTCCCTGATCAGTCCTTGTATTGACCTGAGAAAAAAAATTATAAACATACGAGGTTGTCAGTTATTGCTATCTGAGTAATCAGGTTTCATCCCTTTCAGGTTCCATTCCTGCTTCTAAGTGTCGTTAGAATTTTCCTTGGGTTAAAAACCACTCATGGTTTGAACGAAAATGTCATTCGTAATGAGGGGTTTGTACCTTTTCTGAGGCAAAATCTTTAACCTTTAGTTTCACACCTACAAATCGGTGCATCTGTAGGTTGATGTAGGACATGATCAGACCTTCTCTCATTTCATCCTAAATGTGTGCTCGTATAATATTTTATTACTTTGTGTTATAACGTTATCATTACCTGGTCATGTATAGTTTTTAAAAAATTTCATGCATATTCTCCTATGTCGATTTGTATTAAATGCTTCCAAGTAAAGACTAATTAATGATGTAGAAATTCTAAACTCCCATAAAAATTTTGGCACCACTTGATGCATGCATCTTTCGGCGAATATGTTCATTTTTAATCTGATTTTGTATGACCACACATTCAACATCCATCTTATTTCTTAGCATTTCATCTTGACAATCTAGAACCTTATTTAGTACAAATCTTTGGAGAGCCAGAAAGTAGAGAATGTGTTGCAATTGAATTATAAAATACAAAAGATGGTTTTCTTTTTCTATTACAGTGCTGCAAATAGTTCATCTGTATAAAAGGGGATAATGTTCAAATATTCAAATTGGTACGCATGTATACTAATACATGTTATAACACACCTACTTTGGCTTCTGTACAGGTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTGGTATGTTTCTTAGATCTCGAGAGCTCGTTATCAATATCTCCTCATCTTTGGGAAAATATTTCCAGAATTTTGTCTTCTCATCATATACTTGTCTAATTAAATGCAGTTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAGGTATAGCGCCTCCTCTCTAATAATTAGTAATCCCACTGTCCTAATTTATGTGACGTTGTTTGACTTCGCACAAGTTTAAGAAAAAAGACCTTAATATAAAAATATAAAAATGTGAAATTATTCTAGAACCAACTAAGAATGAAAGTATGTTATATAAATTGTGACAAAGAAGTCGGTACACACTCTCCTCCTTGCAGTGCACATGAAATAATGATTCTCTTGGACTCGTAAGTACTTGTAAGTGGAAATATGGATAAAAGGTGATGAACTAAAAGGTGACCTTGACTTTAATATACACTAATAACTGAATTCACGATAAAAATTTTTATGTAGTTGACTTATATATATCTGACCAAAAGTTGTTGGATTCGGTGGACCCATATGTCGTACCCTAGATTCACCTCAGCTGGCAACTTAACCGACCTGAGCTTGGAATTGTTTGTTTTATCTGCAGGTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAGACACTGCCAATATAATGGCGAAAACAACAAAATTAGGTATGCAATATGTCCCCAGTCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCTAATCTTCCTCAAGTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAAATTTATCTTTACGTT</genome_strand>
        <mrna_strand>TGACCTTCCACTCAACTCCACATAACTTTGTTAATCTCATATTGTTTTACAGAACTCGCTTTTACTTTGGTAGGCATCTTATAGTTGCATATGCCAATATTGTGGCACCTTCAGTATGATCATTCTAGTTTAATCATGTGTTACAGCTTTCCTATTATGCTTTTCTCCTGCACACTGAACCTAGATATCTTGATTTTTTGCATTTAGGCACTACAATCCCTTTAGTTCCACTTCAACTCATTTTTCTTATGGGAGCTAAACCTAAAGTACATATCTTTTGCCTTCACTTCTAATTATTCTAAAACCCTTGCTCTCTAGAGTGCATAACTAACTTTTTAACCACTGCACTAATATTTTCTTCACTATCATTATAATATAAATATGTCAAAATTAACTTAAACTCCATAAACTAGGTCAGACCAATAGATAATATCTACAAATGTGAAGAAGAAAAGAAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTATAGATCCTCGCCTCAAAGAAAAGCGTATCAAAGAAGATCGGAAACATAAATAACGAAGTGAAGAAATCATAGGAAAGCATTCTGAAGAAAGAACAGTAATTACAACAAAATAGTGTGATAACCGCAGTACAAGAGACAGTGAATAGTGATAGATAAGAACCTGGAGAGAAACTGCATACGCTATCCTTGAAGTGCATTGAAGGTAATCTTTAAGTAATCCACTTTTTTCTTATACATACCACTCACACTTCCTATATTTTGAATTTTATATTCATGGCAAATTATATGACAGTTAGAGCATAGTGGTCCAAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG..........................................................................................................TTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAGACACTGCCAATATAATGGCGAAAACAACAAAATTAGGTATGCAATATGTCCCCAGTCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCTAATCTTCCTCAAGTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAAATTTATCTTTACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317761" ref_strand="+" ref_description="SGN-U317761        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>cttatatatgagctgagcatatatcgaaaagagaatctctagctttgtttgaggctatgtaagccaccctcttcatgccttacgtgtgaaatgtcattgtgcatgtggctggctttgaacgcagtatatcctagtggcgagtgagttgaacaagtgtgccatttgagaagacctctcatatcatttcctcgttcctagccaagtgttgtcaataatgatatttgatataattgccccctttgatattaatttatctttacgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="31033" stop="30166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30733" g_stop="30471" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="264" polyA_stop="280"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-U317761" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30733" e_stop="30471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAAATTTATCTTTACGTT</genome_strand>
        <mrna_strand>CTTATATATGAGCTGAGCATATATCGAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAGCCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTGGCTGGCTTTGAACGCAGTATATCCTAGTGGCGAGTGAGTTGAACAAGTGTGCCATTTGAGAAGACCTCTCATATCATTTCCTCGTTCCTAGCCAAGTGTTGTCAATAATGATATTTGATATAATTGCCCCCTTTGATATTAATTTATCTTTACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336271" ref_strand="+" ref_description="SGN-U336271        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | magnesium transporter CorA-like family protein, weak similarity to SP:Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein; supporting cDNA gi:12007446:gb:AF322255.1:AF322255 | chr5:7627653-7631371 FORWARD | Aliases: MRN17.6, MRN17_6(evalue: 7e-84, score=306) genbank/nr: gi|18420608|ref|NP_568424.1| magnesium transporter protein (GMN10) [Arabidopsis thaliana](evalue: 5e-82, score=306)">
      <seq>ggaacatagtccaagcactacttgaggttttgcccaaccgattaactgcagacatattggaggaacttcgcatcagtaaacagaaactagtggaattgggttccagggcaggggctcttaagcaaatgctacttgatattctagaggatactcatgaaatacgtcaaatctgtataattgggagaaattgtgtacttaagaaagaaaacgatgagatagagtgctcggtgcccctagataaggacattgcagaagaagaagaggaagaaattgaaatgcttttggagaattatcttcagagatgtgaatcttgccatggtcaagctgaaaggctccttgattctgcaaaagaaatggaagactcaattgctgtaaacttgagttctcgaaggcttgaggtgagcagatttgagttgattctacaggttggaacattttgtgttgctgttggtgctctggtagcaggtatatttggcatgaacttaagatcctatctagaggaacatgtgtttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="36812" stop="31472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36512" g_stop="36432" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="89" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36431" i_stop="36351" i_length="81">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36350" g_stop="36185" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="255" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36184" i_stop="36093" i_length="92">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36092" g_stop="36047" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="301" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36046" i_stop="33834" i_length="2213">
            <donor d_prob="0.162" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33833" g_stop="33753" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="382" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32843" g_stop="32761" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="465" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="31820" g_stop="31777" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="509" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="31670" g_stop="31664" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="516" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-U336271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36512" e_stop="36432"/>
          <exon e_start="36350" e_stop="36185"/>
          <exon e_start="36092" e_stop="36047"/>
          <exon e_start="33833" e_stop="33753"/>
          <exon e_start="32843" e_stop="32761"/>
          <exon e_start="31820" e_stop="31777"/>
          <exon e_start="31670" e_stop="31664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAGCACTACTTGAGGTTTTGCCCAACCGATTAACTGCAGACATATTGGAGGAACTTCGCATCAGTAAACAGAAACTAGTACGATTACCATTCAGCTGTACCTTATAAAATTAGTCTTGGTACATTCTATTATGACTTCCCTTCTCTTGCTTGTGACAGGTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCAAATCTGTATAATTGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCGGTGCCCCTAGATAAGGACATTGCAGAAGGTGTGCTTATAATATTCCCATACTGATTCTTGCATACTATACCAGATCAATGATGCTTCTTACACTTGCTTATATGTCTTTCTATTTTGCAGAAGAAGAGGAAGAAATTGAAATGCTTTTGGAGAATTATCTTCAGAGGTTGTGTATTGGTGCTATTTCAAATCCCTTAGTGTAGATAGTATACCTCATTACTTGTTGCATACTTAGTTTCTGTGTTTACTCTGCAATCACATAATCAAGCAACATGCACTGGTTGGGCTGTCAGATTCAAATGAAGCTCTGCAGAACAAGGAGCCAATAACAAAATTTAAAGGACACCGTAATTTTATTGAGCAATAGTACACATTAAATCTTGAAAAGTGAACTGCAGTTTTCTATCTCTGAACATGTCTTGATAACTTTTTTGGTGTATGGAAGGGCCTATTTCACATTCGAGGTAAGGTTTTCTCATTTGCTATATACTACCTGGCTCTTATAATGAAATATTGGCACAAACTTTTGAATGATTCTTCCTCCATCCCAATTCATATGACATTCTTTCTGTTTTGAAACATCCCAAACTGTTTGTCACATTTCTTTAATATGCATTTTTACAACTTTCTTGAATTCACATTCATTAACTTCAAATTTTGAACCTAACACATTAAAAAAGGCTCTTACCAAACACCCCAAAAAATGTTAAAGTATACCAACATGACTATGTCTTAACCTCATCTAGTTGATATGATTTGAATGGCTCTTTGTTTCTGATGTGTCCTATTCTTTGCTATAGTTTCCATCAGTCGTGAGGGCGTAGGTCTTTTAGGTCAACGTTTCTCCCTGTGATTTTAGGTCTACATTTCACATTTTTACACTCTACAAATTGATCTATTTGAAGGTCTATGTAGGACATGGCCAAATCATCCTTGGCAACCTCCCAATTTATCCTCTGGGTTTACTACTTGTACTTTTCATCTAATGTAAAGGGCAACCCGGTGCACTTACGCCCCCACTACGTGCAGACCTTAAAGGTTATTGTACGCAGTCTTACACTACATTTCTACTAGAGACTGTTTCCACAGCTCAAACATATGGCAACAACTGTACCAGTTACACCAGGAATCCCCTTCACTTCTCCTCGAATGTGATCACTTATATTTTTCTCCATCCTGACATTCTCTTCTACATAACCTCATCTTGTTGATATGTTGGGCTTTACTGACCTTCCACTCAACTCCACATAACTTTGTTAATCTCATATTGTTTTACAGAACTCGCTTTTACTTTGGTAGGCATCTTATAGTTGCATATGCCAATATTGTGGCACCTTCAGTATGATCATTCTAGTTTAATCATGTGTTACAGCTTTCCTATTATGCTTTTCTCCTGCACACTGAACCTAGATATCTTGATTTTTTGCATTTAGGCACTACAATCCCTTTAGTTCCACTTCAACTCATTTTTCTTATGGGAGCTAAACCTAAAGTACATATCTTTTGCCTTCACTTCTAATTATTCTAAAACCCTTGCTCTCTAGAGTGCATAACTAACTTTTTAACCACTGCACTAATATTTTCTTCACTATCATTATAATATAAATATGTCAAAATTAACTTAAACTCCATAAACTAGGTCAGACCAATAGATAATATCTACAAATGTGAAGAAGAAAAGAAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTATAGATCCTCGCCTCAAAGAAAAGCGTATCAAAGAAGATCGGAAACATAAATAACGAAGTGAAGAAATCATAGGAAAGCATTCTGAAGAAAGAACAGTAATTACAACAAAATAGTGTGATAACCGCAGTACAAGAGACAGTGAATAGTGATAGATAAGAACCTGGAGAGAAACTGCATACGCTATCCTTGAAGTGCATTGAAGGTAATCTTTAAGTAATCCACTTTTTTCTTATACATACCACTCACACTTCCTATATTTTGAATTTTATATTCATGGCAAATTATATGACAGTTAGAGCATAGTGGTCCAAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAGGTTTGTACATGTCTTATTACTTTTCTCTTAGCTCTTTATCCTTGTGTTGGTGAACTGGGTGATGTAAAGTTGAAAAGCGATAACAGTGCATATGTAGGGAAAATTGGTCTAAGTTGCTCTCGTTTATTTGGAGAACTCTTCTATTTAATTTCATCCCCTGAACTTTCTGAAACAGTTCTCATGCTTTTAGAAACACACTGGAAAGACACGTTATAAGCTGGTTTCTTTCTGCAGATAAATTTAGTGTCAGGCAGAAGTATCGATGGCCTGCTAACAGATTCTGCTAGCGTTCTTGATCAGTGAGCCGTTTGTTTTAGTTGTGAGGATGAGACATCAACCAAAGAAAAAACTAGGGCATTAAAAACTTCTATATATGACTTCACAAACGAGAACTTGTACTGAAATTTCAATGAGTGAATGTGTACTTTGTCTTGATAAGAAGAATAACTGTGTAAGAAACTGATAATCCCACAAAAGATGAAAAAAGTATTTAAAGAACAGAGTAAGAGATAAGTAGATGAAAGCATGTAACCATAAATTCCATACTGTACATTTGATAACCTTTTTCTTTCAAGTTTTGGTGTGATAAGTTGTGCTGTACCTTGACTAAACAATATTTAGACACGCTTTTACTGTAGAAAAGCAAGATTCTTTAGCTAAAACTTCTAAGATTTCTGGATATGAATGCATACAAGAAATCAATGAAATATCTACTAAGGTTGTCGATGATGATTGACAGATCAGTTAAAAGCTTGCAACTCAAACAAGATTATCAGATTTTTCAATTGGTGAATGTGTACTTGATTTGGTCGTGTTTTGACTCCTTTGTGGTCTACTGATGCATAATTATGAAATATCATAAGTGGGCAGACTTGATTTTAATGTAAATTTTTTGCTTGTCCTTTTCAGTTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAGGTATTTGTACAACTAATATAAACAGAAAACAAGCTAAACATATCCAGTATTTTCTTCTTTGATATCTCTTCATGAGAATCAGTTGTTGCCACTTAGTTTTGTCTGCTCAGACATTTTTTGTGATGCATGTGTCCAACTTCGTAATTCAAGTCTCCCTGATCAGTCCTTGTATTGACCTGAGAAAAAAAATTATAAACATACGAGGTTGTCAGTTATTGCTATCTGAGTAATCAGGTTTCATCCCTTTCAGGTTCCATTCCTGCTTCTAAGTGTCGTTAGAATTTTCCTTGGGTTAAAAACCACTCATGGTTTGAACGAAAATGTCATTCGTAATGAGGGGTTTGTACCTTTTCTGAGGCAAAATCTTTAACCTTTAGTTTCACACCTACAAATCGGTGCATCTGTAGGTTGATGTAGGACATGATCAGACCTTCTCTCATTTCATCCTAAATGTGTGCTCGTATAATATTTTATTACTTTGTGTTATAACGTTATCATTACCTGGTCATGTATAGTTTTTAAAAAATTTCATGCATATTCTCCTATGTCGATTTGTATTAAATGCTTCCAAGTAAAGACTAATTAATGATGTAGAAATTCTAAACTCCCATAAAAATTTTGGCACCACTTGATGCATGCATCTTTCGGCGAATATGTTCATTTTTAATCTGATTTTGTATGACCACACATTCAACATCCATCTTATTTCTTAGCATTTCATCTTGACAATCTAGAACCTTATTTAGTACAAATCTTTGGAGAGCCAGAAAGTAGAGAATGTGTTGCAATTGAATTATAAAATACAAAAGATGGTTTTCTTTTTCTATTACAGTGCTGCAAATAGTTCATCTGTATAAAAGGGGATAATGTTCAAATATTCAAATTGGTACGCATGTATACTAATACATGTTATAACACACCTACTTTGGCTTCTGTACAGGTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTGGTATGTTTCTTAGATCTCGAGAGCTCGTTATCAATATCTCCTCATCTTTGGGAAAATATTTCCAGAATTTTGTCTTCTCATCATATACTTGTCTAATTAAATGCAGTTTGCAT</genome_strand>
        <mrna_strand>GTCCAAGCACTACTTGAGGTTTTGCCCAACCGATTAACTGCAGACATATTGGAGGAACTTCGCATCAGTAAACAGAAACTA.................................................................................GTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCAAATCTGTATAATTGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCGGTGCCCCTAGATAAGGACATTGCAGAAG............................................................................................AAGAAGAGGAAGAAATTGAAATGCTTTTGGAGAATTATCTTCAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG..........................................................................................................TTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328490" ref_strand="+" ref_description="SGN-U328490        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | magnesium transporter CorA-like family protein, weak similarity to SP:Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein; supporting cDNA gi:12007446:gb:AF322255.1:AF322255 | chr5:7627653-7631371 FORWARD | Aliases: MRN17.6, MRN17_6(evalue: 1e-08, score=55.8) genbank/nr: gi|10177230|dbj|BAB10604.1| gene_id:MRN17.6~ref|NP_015265.1~similar to unknown protein [Arabidopsis thaliana](evalue: 9e-07, score=55.8)">
      <seq>aacaccattataaccctcacattatccatatgaattggggaaatatctagaagattctcgagatctctcaactcttatcgtgatctccggcagctttctctgcaatggcggcaaatgctctgtatttacttcagttaccggttcgatcgccggagtttcgatttttgattacaggaggatacgcgattttccggtcgaagatggagtttccgttctcgcgtaagaatcacgcgatttctctgagagctcggaaggtgagagtagttgagtgtgttgcgaaatcgactgagatggaagcgttgatgaaggacggtggagatgatgataatgatgaaggtgatgaggttcggggagatgatgataaggttgtaactcatggagactctgttagttcgcagaggagtgcttctgcctccggtggcgattcgttgtcccttggaatccgtgaacctgtttatgaggtagtggaggtaaagacgtgtgggacggtagcaaaaaggaaaataaacagaaggcacttgctgaagtccagtggattacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="40937" stop="38673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40637" g_stop="40177" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40176" i_stop="39053" i_length="1124">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39052" g_stop="38980" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="534" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-U328490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40637" e_stop="40177"/>
          <exon e_start="39052" e_stop="38980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCATTATAACCCTCACATTATCCATATGAATTGGGGAAATATCTAGAAGATTCTCGAGATCTCTCAACTCTTATCGTGATCTCCGGCAGCTTTCTCTGCAATGGCGGCAAATGCTCTGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCGTTGTCCCTTGGAATCCGTGAACCTGTTTATGAGGTGCTTAACTTTATTGATCCTTTATTCAGCTTCACAATTTTCGTTGCGCGTTATTTTCTAGTCTAAATTTTGCTTATAGCGTGAAACTTGGTTTAATATACAGAAATTGAGTAGATTGACTGATTAGTTGTACTGCAGAGCCAGATACGGAGTTTGAAGTTCATGAATTCCAACAATAACTTCAAGTTAATATACAAGAATAACTAGTTCGCGTTCAAATATTTATAGATACTTAGTGAATATTTTAGCATATATACATGATTTGAGCAAAAGCTACCGGAAAACTTACACTCGTCAAATCTACTTGATGCATCATTTTTAGTTTAGATAAGTTATTCTGGTGGCCACAATAATGTTTAATCTGCACTGTGAGAAATGCTGAAACATAAACGTATGGAATTGTAACTTGTTCTTGGAGGAGTTTGCAATATGATTATGTAGGTAAAACAAGGGAAATTGGGAATGACGAATTCCTTAAAAGAAGATGTTTTGAAATCTTTCAGCTTCTTATATAGGCATTCATATTTGCTTATGGTTGTGATGTATTATATTTAATCTGCAATACAAAATGAATCCTATAGGACTAACATAGAAAATCAAGAGGCAGAAGAGACTTCTGGTCAACTTTGGGTGTCTTTACAGTAGTCAAAACTATGTCAGTGAAAGATGAAAGGAGGGTAGAATGCAACTTATCGGATTGCGGTTTAATATTCTTAATGAACAAAAAAAAAAGTTTCCAGACTGTCAACAGTCGATTGAAGTATTGAATTTAAAGATATTGATGAAGCTGCATCTGTTACTCACAGAGCGACTCCTCCCTCTTAATTTCAACTTCCTGATTATGTTAGATAGCGCACCAGAAAGATCCCGACATTGTGTTCTGCTTGTAAGTACAAATATTTTACATTCCCTTCATAACAAGAAGAAAACATGCTGGGAGAACTTCTTGATGGTTATCTCACAATTAATATGTGATGCGTCTCTTCATAATAGACAATCATAAATGTTGAGCTGGTTAATTACTTCAATGGTTAATTTGTATCAACATTTGGAAAATTCCCATCCTCCCTCAAAGTGAATTAAGATGGAAAAGTTATTGACAATACGTCGGTTCTTTTCTTAAGGTAGTGGAGGTAAAGACGTGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGTCCAGTG</genome_strand>
        <mrna_strand>AACACCATTATAACCCTCACATTATCCATATGAATTGGGGAAATATCTAGAAGATTCTCGAGATCTCTCAACTCTTATCGTGATCTCCGGCAGCTTTCTCTGCAATGGCGGCAAATGCTCTGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCGTTGTCCCTTGGAATCCGTGAACCTGTTTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGGAGGTAAAGACGTGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGTCCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316661" ref_strand="+" ref_description="SGN-U316661        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT5G03490.1 | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr5:871459-873046 FORWARD | Aliases: F12E4.260, F12E4_260 (evalue: 0.0001, score=43.9) genbank/nr: gi|19743740|gb|AAL92461.1| putative glucosyltransferase [Lycopersicon esculentum](evalue: 6e-42, score=173)">
      <seq>aaataagagtaccttagagccaaccaaaaattcaaaaaacatctaaaaatttgcccaacatattaaatactaacttgtcttccaaaaatggcagcagcaacaacaaaccatgttgaacaacaacacgacgtcgttgtagttgtagttcctcttcctgcacaaggccatctccacgcagccatcgaactctcccaccgcatctcctccgccaacatccctgtttactacgtcagcaccgccgctcacgtccgtcaagctcagtcgcgtgctgtcggctgggatccactgaacaccacaaatctcaatttcattgattttccggtaacattcgaggtacctcctcctaatccagatgcatccatcaaattcccttctcaacttgttcctgctttcaattcttcattgcaactccgtgaaccagttacagatctggtaaataaattggcttcaacatcgagaagagttgttgtgattcatgattttctcacttcatgggttgttcaagatgtaccaaaaatacccaatgcagagtgttactgtttacacactgtttctgcttttcttgtgttttcttatatctgggatgctgctagaccacctgtacctcctgaagctgaagctgtacttaaacaacttccgtctctcgatggttgtaattctcctgaactcgaagaatttgctaagaagcaaatagctgcaagagttcctggcgttggaaatattttcagtacatctcgagttatcgaaggattgtatattgatctaatggatagaatgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="45634" stop="47017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45934" g_stop="46717" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-U316661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45934" e_stop="46717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAGAGTACCTTAGAGCCAACCAAAAATTCAAAAAACATCTAAAAATTTGCCCAACATATTAAATACTAACTTGTCTTCCAAAAATGGCAGCAGCAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAG</genome_strand>
        <mrna_strand>AAATAAGAGTACCTTAGAGCCAACCAAAAATTCAAAAAACATCTAAAAATTTGCCCAACATATTAAATACTAACTTGTCTTCCAAAAATGGCAGCAGCAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316662" ref_strand="+" ref_description="SGN-U316662        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: AT5G26310.1 | Symbol: None | UGT72E3 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl alcohol as well as sinapic acid. The enzyme is thought to be involved in lignin- and phenylpropanoid metabolism. | chr5:9234688-9236388 FORWARD | Aliases: F9D12.4, F9D12_4, UGT72E3 (evalue: 2e-43, score=173) genbank/nr: gi|19743740|gb|AAL92461.1| putative glucosyltransferase [Lycopersicon esculentum](evalue: 1e-125, score=453)">
      <seq>aaaattttgcccaaacatttcttactcatccctcccaaaaaatggcatcaacaacaaaccatgtaaatcaacaacacgacgttgttgtagttatagttcctcttcctgcacaaggccatctccacgcagccctcgaactctcccgccgcctctcctccgccaacatccccgtttactacgtcagcaccaccgctcacgtccggcaagctcactcccgtgctgccggatgggacccattaaacaccccaaatctcaatttcattgattttcctgttacattcaatgcccctcctacgaacccagatgcatccatcaagttcccttcacaactagtccctgctttcaactcttcaatgcaactacgtaccccaattacagatctagtaaataaattgggttcaatatcgaggagagtgatagttattcatgattttctcacgtcttgggtggttcaagatgtacccaaaatatccaatacagagtgttactgtttacacactgtttctgcttatcttatgtttacatatacttgggaggctgctagaccacctgtacctcctgaagctgaagttgtactcaaacaacttccgtctcaagatgggtgtacttctcctgaagtcattgaatttgctatgaagcaaataaatgtacttcaggatgctggaaatatttacagtacgtctcgagcaatcgatggaatgtaccttgatttgacagagaaaatgagtgttcctaaggattttaagaactgggctcttggtccattcaatcctgtagatctgaatattgataagaaggatcgtcattattcagttgagtggttagataaacaaccagctagctcggtgattttcgtgtcctttggatcaacgacttcgttaaccgaggatgaaatcagagagctagctattgggctggaagcaagtcaacagagatttatctgggtcctgagggacgcagataaaggagatatattctccggtgaagttcgaaaatatcaattgcctgaaggatatgagaagagggtatcggaaagaggacttgtaatgagagattgggcaccacaattggaaattctaggacacccgtctacgggtgggttcatgagtcattgtgggtggaattcttgtatagagagtatttcaatgggagtgccaatagcggcctggccaatgcattctgatcaacctagaaatgctttgttcataactgaaggactgaaaattggtatatcagtgagagaatgggagcgaagaaaggaagtggtgcctgcagaaactgttgaaaaagttgtgagaacgttaatggcgtctccggagggagaggagatgaaacggaaagctatggagctcaaggaagcagtgaagttggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="50205" stop="52178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50505" g_stop="51878" g_length="1374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1374" r_length="1374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-U316662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50505" e_stop="51878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTTGCCCAAACATTTCTTACTCATCCCTCCCAAAAAATGGCATCAACAACAAACCATGTAAATCAACAACACGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACTTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAGTTGAGTGGTTAGATAAACAACCAGCTAGCTCGGTGATTTTCGTGTCCTTTGGATCAACGACTTCGTTAACCGAGGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATATCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTCTAGGACACCCGTCTACGGGTGGGTTCATGAGTCATTGTGGGTGGAATTCTTGTATAGAGAGTATTTCAATGGGAGTGCCAATAGCGGCCTGGCCAATGCATTCTGATCAACCTAGAAATGCTTTGTTCATAACTGAAGGACTGAAAATTGGTATATCAGTGAGAGAATGGGAGCGAAGAAAGGAAGTGGTGCCTGCAGAAACTGTTGAAAAAGTTGTGAGAACGTTAATGGCGTCTCCGGAGGGAGAGGAGATGAAACGGAAAGCTATGGAGCTCAAGGAAGCAGTGAAGTTGGCAG</genome_strand>
        <mrna_strand>AAAATTTTGCCCAAACATTTCTTACTCATCCCTCCCAAAAAATGGCATCAACAACAAACCATGTAAATCAACAACACGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACTTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAGTTGAGTGGTTAGATAAACAACCAGCTAGCTCGGTGATTTTCGTGTCCTTTGGATCAACGACTTCGTTAACCGAGGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATATCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTCTAGGACACCCGTCTACGGGTGGGTTCATGAGTCATTGTGGGTGGAATTCTTGTATAGAGAGTATTTCAATGGGAGTGCCAATAGCGGCCTGGCCAATGCATTCTGATCAACCTAGAAATGCTTTGTTCATAACTGAAGGACTGAAAATTGGTATATCAGTGAGAGAATGGGAGCGAAGAAAGGAAGTGGTGCCTGCAGAAACTGTTGAAAAAGTTGTGAGAACGTTAATGGCGTCTCCGGAGGGAGAGGAGATGAAACGGAAAGCTATGGAGCTCAAGGAAGCAGTGAAGTTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342676" ref_strand="+" ref_description="SGN-U342676        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | lecithin:cholesterol acyltransferase family protein / LACT family protein, similar to lecithin:cholesterol acyltransferase (Rattus norvegicus) GI:2306762; contains Pfam profile PF02450: Lecithin:cholesterol acyltransferase (phosphatidylcholine-sterol acyltransferase) | chr3:16379875-16383341 FORWARD | Aliases: F28D10.20(evalue: 3e-47, score=185) genbank/nr: gi|45935132|gb|AAS79590.1| putative phosphatidylcholine-sterol acyltransferase [Ipomoea trifida] (evalue: 2e-48, score=195)">
      <seq>gatcatacgtctacaagttgtcatcttcggatagatgcaagagcattcctcttcaaatcgacagctccgcgtatggaagtgacaacgggtgtttgaagggtggagtacactttgttgatggcgacgagagtgtaccggtcgtgagcgccggcttcatgtgcgcgaaaggttggcgaggcaaaacgcgtttcaacccctcgggcatctcaacatacataagggaacaccagcacaaggctccgtcgagtctgctagaagggagaggcacggagagtggtgctcatgttgacatcatgggaaatgtcgccttcatcgaggatgtccttcgactcgctggtggtgccaccggtgcagagttgggtggcgatagaatctactcggatattatgaaaatgtcagagaggataaatattcgtctttaacgtgtgataatacgcgcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="72091" stop="71051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71791" g_stop="71351" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-U342676" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71791" e_stop="71351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATACGTCTACAAGTTGTCATCTTCGGATAGATGCAAGAGCATTCCTCTTCAAATCGACAGCTCTGCGTATGGAAGTGACAACGGGTGTTTGAAGGGTGGAGTACACTTTGTTGATGGCGACGAGAGTGTACCGGTCGTGAGCGCCGGCTTCATGTGCGCGAAAGGTTGGCGAGGCAAAACGCGTTTCAACCCCTCGGGCATCTCAACATACATAAGGGAACACCAGCACAAGGCTCCGTCGAGTCTGCTAGAAGGGAGAGGCACGGAGAGTGGTGCTCATGTTGACATCATGGGAAATGTCGCCTTCATCGAGGATGTCCTTCGACTCGCTGGTGGTGCCACCGGTGCAGAGTTGGGTGGCGATAGAATCTACTCGGATATTATGAAAATGTCAGAGAGGATAAATATTCGTCTTTAACGTGTGATAATACGCGCGA</genome_strand>
        <mrna_strand>GATCATACGTCTACAAGTTGTCATCTTCGGATAGATGCAAGAGCATTCCTCTTCAAATCGACAGCTCCGCGTATGGAAGTGACAACGGGTGTTTGAAGGGTGGAGTACACTTTGTTGATGGCGACGAGAGTGTACCGGTCGTGAGCGCCGGCTTCATGTGCGCGAAAGGTTGGCGAGGCAAAACGCGTTTCAACCCCTCGGGCATCTCAACATACATAAGGGAACACCAGCACAAGGCTCCGTCGAGTCTGCTAGAAGGGAGAGGCACGGAGAGTGGTGCTCATGTTGACATCATGGGAAATGTCGCCTTCATCGAGGATGTCCTTCGACTCGCTGGTGGTGCCACCGGTGCAGAGTTGGGTGGCGATAGAATCTACTCGGATATTATGAAAATGTCAGAGAGGATAAATATTCGTCTTTAACGTGTGATAATACGCGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346023" ref_strand="+" ref_description="SGN-U346023        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaaacacttagaaaatctgaaattgggtactgaaaatcgactctctgaacttcgtgacggaatgacaggacggaccatcacaggcgtgacggaccgtcatagattgttcagtggaaattgactctctgacccttgcgacgacctgcaggacggaccgtcacagtcacgacggcccgtcacaggttgcgcaaatcccaggcagaatcggatttccttacacgttttaagggacgtttttggactattctttccttaattatagatttcgtgggtttatattaataactcaaattcttggggttaaaagaggtaaccctaagttaattagtggggtattattgccatcttttattcttaattatatgttaatttggggtaaaagaaagagggttttgaaacgagaccctgcgatggtccgtcgtgcccatgacggtccgtcgtggggtccgtcgcttctgccagtttttccagaaataaagtctgctgctcaaaacgactaaacgggtcgttacattatttgactctatcactttaattttctagttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="107859" stop="94911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107559" g_stop="107170" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107169" i_stop="95340" i_length="11830">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95339" g_stop="95225" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="504" r_length="115" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-U346023" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107559" e_stop="107170"/>
          <exon e_start="95339" e_stop="95225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTTGTGACGGAATGGCAGGACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTT-GGTGGAAATATTGGGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCATATCCCAGGTAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTGGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGTCATCTTTTATTCTTAATTATATACTAA-TTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAATAGAAAGAACGAAGAGAGACAGAAAAAGAAAGAGAACGAGTAGAGAGAGAGAGAAACGAAGAGGATAGCAAGGATTTTGAGAAGATAGCTTGTTGATCGCAATTCTTCGGTGGAGGTAGGTTATGGTTATTTCATGCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATTGTAAACCTTCTATATGCTTAATTGTATGCTTGCATGAATGATGTGATTATGTAATTGTGAATAAATAAGCATGATGAAGCTATTGAATCTCAAATCTTGAAAAGAAACCCTAATCTACTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATTGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCATGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGAAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCTCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAGCTATAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCCTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCACCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACCTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTATTAATGAGTTTAAGTCTTCCGCATTATTTTCTGTTGTTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAATCGCGCCCTGGATTTGGGTCGTGACATAGCCAATGCCTAAAAATTATATAATATTTAGGTGTAAGTTTACATTACTTAGAACAATACGTAGATATCTTTTGCTATTTCATGCTATATTATTCTAAAATTTGGTTTTGCAGTGCAAATTTTGTCTTTGATTTGAATATCATAGTTTAAATTTCAGATATTTGTATTCTAATGTTTAAAATATGTATTCAAACTTCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAACTCCTCAATTTTTTATCTTCTCCAATAAATCTTGAGTTATATATATCATGAAAAAATATTTTATATTTATCAATTATCTCATGTTTGATGTGATTTAGTGACATTTATCAGGTAACTTTTTTTTAATTAATTTTTTTTAAAATTATATATTAATATATTGTAAATATTTTTTGTTTGCCAATTGTCTTATGTTTGATGTGATCACGGACATTTATCAGGTACCTTTTTTAATTATATTTTTTAAAATTTATATATTAATATATTGTAAATATTTTTTTGTTTACCAATTATCTCATGTTTTATGTGAATTACTGACATTTATTCGATACCTTTTTAACTTTTTTTTAAAAAAAAATTATATATTAATATATTGTAAGGTCTTGATTCTTAAGAATGATTTTTGCATCATAATTTTATTTGTAACTAAAAAGTTATCTTTTTATTCATTTTATTGTTATACAAAAATGAATGAATGTCTCAATTATTACTTTTCATTTGTTTATTTTCTTTAAAATAAGAGTTTAATTATTTTTATTTCATTACCTTATATAAATATTGACAATTATAACTTCTAAATTAATAGTCAATGACTGTACTTTGAACATATTTTTTTGTTACTTGCACTTTATAGATTCGGATCTTTCAATTCTTCATAGATGTAGATCTCGAATTTATGAATGAGGATATTTTCAAAACTCACACAGAAAAAAGGAAGTGAGTTCATTACTAAAAGTATACAGAATTTTGTGGATTGTGGATGAAAATATTTAAATGTAAGGATTTGGGTTGCTTTTATTTGGGGTTTTTGTGAGATTTATATAATCACTCTTAATCTATCGATGTCGACTTTTTATGTAGGTTTTTTTTGTTAGACTTAATTGTATGATTTTTTTATTTTTCCATTATTTGCTAATACTAAATGATTTTTATCTTATGACTTTTTTTAATTAATAATTATAATTATAGAATTAGAATGATTTTTTATGATTTAAAATAGTTAAAGAAAATTTCAGTACTTTTCTATATGTTAAAAATAATAGCGGGGGTAATATTTTTCTTTTGGAGTTTTGTGTAGTGATAAAGTGTTATGTGATATGAAGAGATAAAGGCGAATTCAGAATTTAAATTTTATATATTTAATACTTAAAGTTTTTAGTATTAACTTTTGATTTTTTTAAGATTATGTTTTTGAAGATCGAATTTGTTTATGCGTCTAGTGTAAAAGCAAGTGATGTATAAATTTTTATATATTTAACGTTTAATAATTTAGAACTAATTTGTTATATATTTCACAATTTATTGTAATTTTAATGAATTCTTACATACAAATTTATGTATATCATGAATATACTAAAGTAGAAGAATATGCAATGATAAATTAGTTTCTGGATGGTGTGCTAAAAAAATGAGCATGTGGTAATCATTGTTATATATCCACAAAATTTAACATCAACATATTATTGTTGTATCTTCAAAAAATTTAACATATATTATATGCAAATTATTGAACGTTAAGTGTTTTAAATTTTAATTAACTAACAAAGTAATATATAAACTGTAATTTTAAAATAAATTTGTTGTCATCAATTAGTTTTGAATAATTCCTTTTCATTTCTCCTCAAATTTATTGTTAAGCTTTCATAGGAGGCTAACAAATATTTGTACTTTAATTTACTTACAATAAAAGAATATGCATAGTTTCTGTTAAACAGTATAATTTTACCGTTTATATTTTTAATGTCAATATTGTCACTTTTTTTTAGTTTATATTTTAGGATATATTTTCTTTTAAATTAAGCAAAAGAAAATCATTATACCACACACAAATTTAAGGAATTCTCTCTCTTTTTTTAATGAACTTTATTTTCTAATGACTAAGTTTTAGGAAATGAAAGGTAAACAATTAAATTAAAATCTAATTTATTTGGATTTGAAGACTATATAATTATTTCAAGGTTTAAAGAGAGGAAAGACAAAATAAAATGGGTCATCATATTTTTTAATGGGTTGGGTTTGGTGGGTGGATCACTAAATGGTTAAATTTATTTTTTAAAATTTTTGGTTTGTTATAAAATAATTAATATCAAAAAATTTTAATTAAAAAATAATTTAATAGATTGAGTGACTTTTTGAGGAAAGAGTGGATAATTGAGTGACTTTTGAGTTAAAATTCAAAGTTGAGTGACTTTTTGAGAAAATAGTGTATAGTTGAGTGACTTTTGAGTGAAAATTGAAAGTTAAGTGACTTTCTGAGAGAAGAGTGCATAGTTGAGTGACCATCTGAGGTATTAACTCAATTTTTTGAAATAGTAAAAAATCAATTTGTAAATCTAAAGATTTTTTTCTTAATCGCGCGAAGCATGGCGAAGTCTCCCAATTTTTCATATAATTAAGAATAAGGTCGTGAATATGTTGAAGTGAATATTAAAAATTATAACAAAATTGTTATTTTCCCCAAACATCTTCTTTTCTCTTAATCGACATCCATTTAACTTATCAACTTCATTTAACTAAATTTTTATCTTTATATCTTACTCACTAAAAAGCGATAAATAAATAAAATCATATTGTTTGTTAGCATTATTATTTTCTAACTAACAACCAAATTATCCTTGGCAACATTATTATAGTCTTTGCTACTTGCAACAATAAATATTTTTTGTTGAGCAGTATTTATCTATCACTTTCTTAAGCGCTGGCAATTCATGTTACACACATTATATAAGGTTAATACTTTTTTTTATTTTAATATGGTTTTTTGTTTTGACTTAATACGAATTTTAACAGAGTAAAAATAAATAAATAAATTATATTTTATAATTTTAAATTAAAGATACATAAAATATATAATTTTTATAATTTTTTATAATATTAAACATATTATGTGTAAAATTAAAACTTAAAATTATAAAAAAAAAAAAAGAGAGAGAGAAAAGAGGTTGTTGGCTTCATCAATAAGGGAATGATCAAATACACAAATTTAAGTTATATTGAAATTATAATTTCTAAATTAATTTATTTAATTTAAGAAACAGATAAAATAATTATAAATTAAATAGACTAAAATAAAATATCTAACAATCAGTTACATTATAAATTTTATTTCAAATTTAATTATGAAATACTATATTTATTCCGCCTACCAAACGATCCGCAGGAAATAAATGAGTTGTCCCTCTTTCATTTTCATCTTTTTAAAAAATTATGTACGTGTAGATATTTTTAAGTCTATATTTGAGAAACGATTGCCTTTATCATAATATATATTTTATAATCTATTAAATATTTTTGGGTTAGTTTTATTTTTTAATTAATTAATATTTAAAATATTTTTTTATTTGACTAACTAAATTTAAATACTTTTGTAATCTTATTACATATTGGAAACACACATAGGGTATTTTCAAAGCTTTTTCCGAATTTTTATTAAGGAGTCATATACTTTTACAAGAGTTTGAAACTGTTTATTATATCATGTATTCAGAGTATATCTAGATTTATTTATTTAAGCAAAAGGATATTTTTAAGATTATCATAACTCACAATTCAAAAATAAAACTAATAATTTACAAACATTTTCAATACTTCTCTCTAAATATATTTAAAGTCTTTGTGTTCTAAGTTCTCTGATCGTTGTTTGATCTTTAAATTTTTGAAGCTCACTCATTGTCATTTTTAAATATTTCAAATTCAATATAAATAAGAGGTTATTAAAGTCATTTTTTAAAAAATATTTTATAATCATTCAATTATTATTTTATTTTTATTATAAATTAAATGATCTATCACTATATAATATCTAATAAAACTTTTAAAGATACTCTAATTCTGTATCAGCATAAATTAATATTCAGAAAGTTATCATATATATAAAAAATGAATCAAAAGAGTTGAAGACTAATTGTCTCAAAATATAATGTATGAAAACGGATGGGGTTTTTTTAGACTTATTTAAGAGGACATTTTAATTTGACATAAATTTTTCCATGCAAATCAAATTTAATCAAATCTTAAAATAAATATTTAAATTAAATAGAAATAATAGTACTAATAAAGTGGTCTTTATTGATAAAATTATATTTTCGTTTACTTTTAGTTGTTATAGTTTCTTTTTTAGAGTTAAACTATGAAAATTCTGACAAACATTTTATAGTATATTTTTTAATCATATTGATATGAAAAAATTATAATTTATAATACTTTTTATAATCTTAAAATACTTATATCTTATATTTAATTATCGAATTAATATAATTTAATTTAATTTTAAAAAATTAATAATATTAATTTTAAAAAACGCAACATAACAAATAAAATTGAATAGAGGAATAACACTTTTTGCTAGAGAAGCACCGACACGCATTATGCCAAAATATGCACAAAAATAATTGTACTGCTCAACAAGTAAGCTGTTCTTACCCACTCTCACTCTCAGGCGCGTGGTATACACCTTTTACTCCTTAAGGTATCAAAGTACCGACAGTTTGTTACAAATGAAAACATGACTTATTAGATAATTTTGAATAATTAAGTGATTATTTAAGTAATAGACTTCTTAAGAAATTATAAAATAGAATGGTAATTATAAAATAGAATGGTAATTTAATTACTCTTTGAATATAATAAATATAATATCTTGAAAAATATAATAGAAAAATACCTATAATTAATAAAGATGAATTAAGAACTAAATGTAAAATTATTTATTAATTTTATTAAGTGGATAAGTATTGCGGAACATCTCAAAATAGTATAGTGAACAATTATTGTTGAACATATGGAATAATATATGAACAGGTTCTTTAAGTTGACTTCAATTGATATGTCTTTTTATTTTGAACATGCACGAATAATTAAACACTTAAAATTTGTATAAATTTGAATAATTACACACGCCTCTTACGTAACATTATACAAATCAGTTTTGATGTATCTCTCACGAATTACCATGTATGGCACATATATCTATTGCTTCTTTAACTTTATATAAATTTAAATATTTAATTACGCATACCTAAGCAGGAGTAAAAAAAATATGCCAGTTGAAACGTTATATTTAACGTGTATGTATTATGTCATCTAATACCTATTAGATATCTTGAAGTAGTGCATTGACAATTTCCTCAAGTACTTGCATAATCTTGAAAAATGTTCAAATTTAGCTAAAACTATTCGATTATTCTTATATTTGCCTATTTTTACCTTTTGGTCCACGAAAGCTTCATACTATTTTTAGTCGAATATTTGCCCCTGTCTATTGATCATCTAGCTTGACTCTTGACATTTAAAACGACAGAGCCTTTGTAGACAAACAAAAGATCCAAAGTTATCTCTAAACTCACATTTTGATTTATGTATATCGTTTGTAATAATTTGAAGCATATTTTTGAAGTTTGAACAACTCGTAATGTTAAAGTAAAATCTAAATACACTTTTACATGGCTTGACGAAATCCAAAGAATCCGGGGGTGTATTTGAACATTTTCCTTTGCGGAGGGGTGTGCGTAAATAAATAAATAAACGGGAAACTTTCACATATAACCACTTTAAAATAATTAATTATTCTTCATAGCTATAGTTTGATAATTACAATTTGTAGCTACATGATATATGGAGGAGAGAGGCGAGCAAGAATGGGAGAGAGAGGAGAGAGACGAGAGAGGCGAGAGAGAGGGGGGAAAGAGTGGGAGAAAGGTGAATTGTATATGTATATTGGTTAGATAATTGTATATTTTACATATGTATATATGGAAAGAGAGATTGAGAAATGGAGGAGAGAGGCGAGCGAGAGAGGGCAGAGAGTGGGAGAGAGGTAAGTTGTATATGTATATAATATTATATTATACATATGCATTTGTATAAATGACAAGCGAGATTGGGAGAGAGAGGATAGAGGCGAGCGAGTTTGATAGAGGAAGGAGAGAGGCAAGCGAGAGAGGATAAATAGTAGTAGTGAGATGAATTGTATATGTATATATATATATATTAAATAGCTGTATATTACACATATATATTTGTATATTCTAGCGAATTATACATATACAAACGTGACTAATTATACAAACTTGAAGTCAGTCCACGTGAATAATGTATAATGTTAGTCGCTATTGATAATTATAGCAAACTATAGCTATGATGAATAATTAAATAATATAAATATTTTGTTACGTAATTTTCCCTTAAAACAAAAAACTACAAAATGGGCCTTAGGCGGAGATATGAGCTTAGGCCCAATTGTATAGTCTTGGACCTTGCGGTAGGATGGATCTGCAAAATGGGCCTTTGGATTTATTTCAGAAATAACACCACTTTGCCGCTTGTAGCGTTATTATTTAAAACATAATCAGTTTTTAATAATTATTTAAATTTTAGTCAGTTTTAACTGCCGGTTAAACTTGAATTCAAGATGAATCTCCCCCACTACTCATCGTTTTTGGTTTGGTAATTCATATTGCTGTCTTAAATGATTTCGAGAGTCATGATGATATTATTAATGAGGGACGTTTATTTAATATTTTACTGAAATATATAATTGTTTTATCTAAATATTTAAATTATTAGATAAAGTATATTTTATTTGCTCGTAAGACATTAATTCTATTTAATTTTCACCACCCATAACATCAATTCTTGTGTCCATAGTCTCCTTTTTTAGGTAAATTGTCATTTTATACTTCAATAGCATGAAAAGGACGAAAATGAAAGCAATACAAAGTAAACACAAACACGTAATCTAGCAATTAACATAATAAACTAAAGGGTGTTAATACTCGATGAACTATTTAATAATGAAATAATTATGAGAATAAATCATTTAATTTATAAAATATATACGAAATGTATTGATTGTATATACTTATATCATATTATACATACACTCATAGTGAGTCATGGAGTCACGTGAAAGAATGAGGTGTACATGTATCAATTAATTTCAATCTTTTTTTATCAGTCTATATTGCGTGATTTTGCTTCTGACTAATGTACTGTATGACCTTGACGGTGCTTTTACGTCTCTAAATTATGGATCCGTCTTTATATATACTTTACTATTCATATAATATGTGTATTTTATTACACAATAAATATATAGAAACTTTAATTATGTTGTTAAACTAGTTAATCTAATGATACATATTTTTAATTTTCCTTATTAATTTATCTTGAAACAATATGATTATGTCTCTCTCTCTTTTTTAAGAGGATAACTATATATTATATCGGAATATAAGAAAATTTTGGAAAATGGTGACGTTCTAAAAGTGACTACTTTTCTTGTCAATTGGAAACTATTTATTTTATTTTTAACTTTATATATAAAAAAAGAAGTAGGTCAAAAATGGTGATGCACGACAAAATACATTTTTTTTTTGTTTCCATTCTTAAATTTGTTTTTTCGAAGTAACTTTCTCTTTATAAATACTTTTGTTATTTATATGTACATATTTTTGGATCAATCATAATCACATGGATTTTTTTTTTTGGAATCATTGAGATTTTTAAAAAAGAAATTGTGCATCAATTCAAAATTTTAAGATAATTAACTGAATAGTTTGTAAAACTTGTACAACTGAGAGATCGATTTTTTCAATTCACCTCAAATTGGAGGTCAATATATAAGTCTTAATTAATAAAAAAAAAAGGATCATTTTTTGGATGCTTTATTATTATTATTTTTTGAAAACGTAAATCTTTTTGTTGCTTGGTTTAAGATTATGATTTTGGTTAAAAAAAAGATTCTCCAAAGGTCAATTTTTGCATGTATATTATAAAAAAGTCGATCTCAAGAGGTCAATTTGTATTTTTTCTAAAAATGGGATTACTATAATTTGACATAAAAAAACATTTACCAAACTATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATTCTAGTTAACGCATAAGAAAACATTTTTCCATGCGATATCATATCACCAGGGGCGGACCCACATGGTGTCCGCCGGGTGCTCGAGCACCCATTAACTTCGTTACGAAATATATATATCTATGTAGAAATCGATAGGTATTTGTATAAAATTAACATAGAACATCCAATGAATAAATCATATAGTTGGCCCAATGATTCTAGGATGAGTACTTAAGACTCTTTTAGTGTTGTTGTACCAAAGTTCGAATCTCATTGTTAACACATATTTTTTATTGTTTCACTTTAGAAATCCGCTTCATTATATGAAATCATGAGATGATATATAAAGCTTAATTCTTATGTGGCATAGTGACGTGTACAGACCCCCAAGTGAACAAGGACAAAACTTAAGGGGGTCAAAGTGATATTTTAGAAACTGAAGTAATGCAATAAATAGGGAGAAATTAATAAAAACTATATGACAAACTAGAATAATTGAAAATTATAATGAGGGCTAGATATATATCATAGGGACACATTAATGAGCAAATTTATTCTCCTTTCTTGTCACGACCCAAATCCGGGTCGTGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACGTTTCAATATAATATCAACAGAAAGTAATGCGGAAGACTTAAACTCATTAATAAAATCAATAACTATTATTATCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATGATCAAATTACTAAACTAAGAGTATTCTGAAAGCTAAAACAAGTAAAAGCTAGCCCATGCCGGAACTTCAAGGCATCAAGACATGAGGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGATATCCGGAATAATGAAGACTGGCTAGACTTGCGGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAAATAACAAAGAAGAAAACATAAAAGTAGGGGGTCAGTACAAACACAAGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATGTACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTTATTGTCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCCTTAATCTACGTGTCGGTTCGTGACACTCGATCCCCTAAATCTACGTGTCAGTTCGTGACACCCGATCCCCTAATTCTACGTATCGGTTTTTGACACCCGATCCCTTAATACTACGTGTCGGTTCGTGACACCCGATCCCCTAATACTACGTGTCGGTTCGTGACACCCGATTCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACTACTACGTGTCGGGTCGTGACACCCGATCCCCTAATCTCCTTCTATCAATTCATCAACCCGATCCACATTCATGCAAGCATACAATCGAGCACATAGCAGGGTTTACAATATTATCAATACATATCATTCGCTATTAAGAGTTTACTACAAATATCGTAAGAGAAACCATAACCTACTTACACCGAAGATTAGTGATCAAGCAAGCAACTTTCCCAAAGCTTTGTGTTTTTCCCCTTCTTGAGCGTCTCTCTCTATCGATTCCCTTCTCTCTTTTTTTTTTGTTTTTTCTATTTTTCTTATTCAAACCCCCTTTCTTTTACCCTAATTAAAATGTAATTAAGTGTAAAAGATGAGAATAATAACCCACAATTTAACTCAAGATTACCTCTTTTATCCCCCAAGAAATTGAGTTATTCATATAAACCCACGAAATATGTAATTATAGCAGGAATAGCCCAAAACGCCCCTTTAAAACTTTACCAGAAATTCGACTCCGACTGGGATTACGCAACCTGTGACGGGCCGTCGTGCCTGTGACGGTCCGTCCTGCTGCTCCGTTACAGAGTTCAGAGACTGAAATTCTCTGAAGAGTCTGTGATGGTCCGTCACGCCTGTGACGGTCCGTCCTACACTTTCGTCACGAAGTTCAGAGAGTCGATTTCAGTACCCAAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCCCATGACGATCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAG</genome_strand>
        <mrna_strand>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGACAGGACGGACCATCACAGGCGTGACGGACCGTCATAGATTGTTCAGTGG-AA-ATTGACTCTCTGACCCTTGCGACGACCTGCAGGACGGACCGTCACAGTCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTT-GGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATGTTAATTTGGGGTAAAAGAAAGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="96867" stop="95896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96567" g_stop="96231" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96567" e_stop="96231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATGTACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTTATTGTCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCCTTAATCTACGTGTC-GGTTCGTGACACTCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335078" ref_strand="+" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="107161" stop="105931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106861" g_stop="106577" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106576" i_stop="106462" i_length="115">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106461" g_stop="106231" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="515" r_length="231" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-U335078" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106861" e_stop="106577"/>
          <exon e_start="106461" e_stop="106231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTAC-TTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATTGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCATGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGAAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCTCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAGCTATAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCCTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAG-A-ATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAG...................................................................................................................GATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314845" ref_strand="+" ref_description="SGN-U314845        Tomato 200607 #1 [38 ESTs aligned] arabidopsis/peptide: AT1G08200.1 | Symbol: None | expressed protein | chr1:2573857-2576709 REVERSE | Aliases: T23G18.6, T23G18_6 (evalue: 0, score=727) genbank/nr: UDP-apiose/xylose(evalue: 0, score=746)">
      <seq>gctctcctccctcctttttcttgctttaaatacattcaccgtcaaaaacctttacatacatatcgattcacttcaatatagagagagaaactgaaaaaagtatcttaaaaaaaattgcagtgagagaggatttgcagtaattggaaatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcatttatgtgagaagcttctgtcggagactcctcataaggtgcttgctgtcgatgtttacagtgataagattaagcatttgcttgaaccggcgacggttacttgggctgatcgaattcagtttcatcgaatcaatattaagaatgattctcgccttgaaggtctcatcaaaatggcagatctgaccataaatcttgctgcgatctgcacacctgcagattacaacactcgtccacttgatacaatttacagcaatttcatcgatgctctaccagtggtcaagtactgctcagaaaatggaaagcgtctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttaccgaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttagagttcactattgtaaggccatttaactggattggtcctaggatggattttattcccggcattgatggtcctagtgaaggtgttccaagagtgttagcttgctttagtaataaccttttaagacgtgagcctttgaaacttgtggatgggggagaatctcaaaggaccttcatatatatcaaagatgctattgaagctgttcttctaatgatcgaaaatcctgccagagccaatggccatatctttaatgttggtaaccctaacaatgaagttactgtcaggcagctggctgaaatgatgactaaggtgtatgctaaggtgagtggagagtcttctattgaaacacccaccattgatgtaagttctaaagaattttatggtgaggggtatgatgacagtgacaagaggattccggacatgaccataatcaacaggcagcttggttggaacccaaagacttccttatgggacttgctagaatccacactcacataccaacacaggacatacgctgaggctgtcaagcaggccatgtctaaaacaacagcaaattgattgttcgctgcttgttggcaggtctttcaatatcttgttacgattctcctgagtaaaaatctacatagtccttcacctcatacacgtaattttacgtcccttctgtaatgaatcatgtattctattttgtgacagcatatttattaagaaatttgaaaacctttttaacaatacaatgctaaggatactagatggacaggaatgcaggtgtcataggctgggtgtattatgtcactagtgcttcaaaatagttatcggggtattagataaaagaaaagctgtcctgttcttataagatctgttgtcgtctatatatttattcctatgtatggaaacatcttgtatcattttcatcgacctgttgatggggctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110008" stop="115641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110308" g_stop="110720" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111951" g_stop="112043" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="506" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112181" g_stop="112288" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="614" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="729" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114012" g_stop="114145" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="863" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="1.00"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="114243" g_stop="114344" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="965" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="114428" g_stop="114520" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="966" r_stop="1058" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="114630" g_stop="114765" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1059" r_stop="1194" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86">
            <donor d_prob="0.482" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="114852" g_stop="115333" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1195" r_stop="1676" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1680" polyA_stop="1702"/>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-U314845" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1676</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110308" e_stop="110720"/>
          <exon e_start="111951" e_stop="112043"/>
          <exon e_start="112181" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114145"/>
          <exon e_start="114243" e_stop="114344"/>
          <exon e_start="114428" e_stop="114520"/>
          <exon e_start="114630" e_stop="114765"/>
          <exon e_start="114852" e_stop="115333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCCTCCCTCCTTTTTCTTGCTTTAAATACATTCACCGTCAAAAACCTTTACATACATATCGATTCACTTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATCGTGAGTTTTGACCTCCTTATCCCTTTATGTTTGTTTTCAGAAATGCATTAGGATCTATGTTGATTCAAGTAAATACAATGCAGGAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAGGTGAAATAATCTTTCAATGTCTTTCTCCTACGCCTACTCCTTTGTCCTAAATTTCATGCAGCATATTGTCGATACCATGTTTTTTCTCAACTCCTTTGGGTAATAACAGGTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTGGTATTGACCTGTTTCTTCGTCTATTGACTATTTTAATACTTGCAGAAGTTGAGAATAATCTGACTGTTAAATTGTGTGATGACCAGGTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGG</genome_strand>
        <mrna_strand>GCTCTCCTCCCTCCTTTTTCTTGCTTTAAATACATTCACCGTCAAAAACCTTTACATACATATCGATTCACTTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG.........................................................................................................................................GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAAT.................................................................................................AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATC...................................................................................GAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG.............................................................................................................GTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG......................................................................................GTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339119" ref_strand="+" ref_description="SGN-U339119        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G08200.1 | Symbol: None | expressed protein | chr1:2573857-2576709 REVERSE | Aliases: T23G18.6, T23G18_6 (evalue: 1e-96, score=325) genbank/nr: gi|45935133|gb|AAS79591.1| putative dihydroflavonol reductase [Ipomoea trifida] (evalue: 1e-97, score=333)">
      <seq>agaaactgaaaaagtatcttcaaaaaaattgtagtgagagaggatttgcagtaatcggagatggcaggaagagtagatctggacggtaatcccattaagcagattacgatatgcatgattggtgccggtggattcattggttctcattcacttctcaacttgtgaagtttatgggaaaaccataggtgcctttttacccaaagacagcccactccggcaggatcctgcttattatgtgcttaaggaagacacctccccttgcatctttggaccaattgagaagcagcggtggtcctatgcatgtgcaaaacagttgattgagaggctggtctatgctgagggtgcggagaatggcttatagttcactattgtaaggccatttaactggattggtcctaggatggattttattcccggcattgatggtcctagtgaaagtgttccaagagtattagcttgctttagtaataaccttttaagacgtgagcctttgaaacttgtggatgggggagaatctcaaaggaccttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="+" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="110093" stop="114603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110393" g_stop="110538" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110539" i_stop="112213" i_length="1675">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112214" g_stop="112288" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="220" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113814" g_stop="113928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="335" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114012" g_stop="114145" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="469" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97">
            <donor d_prob="0.735" d_score="0.96"/>
            <acceptor a_prob="0.904" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="114243" g_stop="114303" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="530" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="+" ref_id="SGN-U339119" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110393" e_stop="110538"/>
          <exon e_start="112214" e_stop="112288"/>
          <exon e_start="113814" e_stop="113928"/>
          <exon e_start="114012" e_stop="114145"/>
          <exon e_start="114243" e_stop="114303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTGGTAATTTTAAGCTAATTTATTTCTTCTATAGTGTATGTATGTGTTCATTATGCAAATAATTGAATGTTCATATGGTGAATTTTTGTTTTTTTAGGATTTTAGTGGTTTTTAGCTTGGTGTTTGGTTTATTTGATCCGGTGGCCGAGACGAAATATGAAATAGTAAAGACACGTAGAAGCTAAATAGGTTCAACATTTATTATATATAACAGTATAATTTTAAGTTCCATGTTTGAAATTGAGCATAAGGTACTTGCCTCAGTTGTTTATGGTGATAAGATTAAGCATTTGCTTGAACCGGCGATGCTTACTTGGGATGATCGTATTCAGTTTCATTGTATCAATATTAAGAATGATTCTCGCCTTGATGGCCTCGTCATGGCAGATCTGGTGATTTTAAGCTCTTTACATTTTTGTGTTCTTCTTATATAGTGTCTGCGCATGCTGAATTTTGCGTCACTCTGAACTTAAGGAAGTTCATTATGCACATAATTGGATTTTATGAGTAATTTCTACCTTGGTGTTTTGATGATTTAATCTCATTTTTTCTCTTTTAGTTATTGTGACGTTATGACAAGCTTTGATTTCTTAATAATATGTTTCCTGATTTTCAATTTTTAATATGCATCTATAGTGTGAATTTTAGACTAGTATTGGATCTGAGTTTGTTCATTTGGTGTGATGTAAATAAATGAATATTGAGCCTAAATTAATCCTAAAATTTAGATTAAGAGTGGGGAAATCACCACCCACCCCTTTCTCATCCAATGTTGAACTCTTCACCACCCCCACTTCACTTTCAGGACTAGACATCTGGTGTGTGTATTGTTTAATGGGGGGGGGGGGCTGACTTGTACACAATAATTGAGATGAGTCATGCTATGATAATATGTAAAAGAATGGATCTTGGGACTCGCTCAATCTTAAAAGTTAGCTCATGATTGGAGGATTGCCCAATTCCACATAAAGAGACCACACAGTCTTTTTTCAATTGGACTCTTCAACAAATGATATTGTAGAGAGGATATCCAGAAATTTCTAACACATATCAGTGTACCTAATGCATTTAAATCAATATTATGGATTACTAATTCAACAGCTTTGTCTAATTTTCTTGGGTATTGGTTACATTATCAATCTGTACATTTCTGATGCTTTTTCCTGGATTTTAAATGTTGATCTGTGCAAGTCTTTGACTATTTCTGACTTTTTATTCTTTCTTGTTATGTAGACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTGGTATGCATTTTCGGATTTTTAATTTCATTGATAGATGAAATTGCCATGAGATTTTGATGGTTGTCACTTGTAGGAAAGATTTCACTTTTTTTCAGCTTAGGTTGAGACGTGAAGTTGATTTGAACTGATTAATGCAGGTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAGGTAAAACTCCGCTTTCCTAGTTATATTTTTCAGTGAACCTAGATCTGTTATTTTCTATGTGTTTCGTGTGTCGTATCATGAAATTCTTGTTGTTTCTTTTAAACATCAAAAAGCTCTCTTGTTATTGACATCATTTTCTTGGGTGTATTCTCAATTTGGTCTTAATATTATGATTAGTACTGTCTGATACTTCTAAACTTGTGATTTTATTTTTAAAGTTCTGGATGAAGTACTTTACCTCGGCTTGCTTGTTTTACTTGTATGTCATTTGCTCTCATAGCAAACATGTATCAATTTAGATAGAAACCTGTGGATATCCAAAAGTATTCTCGATACATACTTGGGTTTGTTGTGACTGTCTTCCTTTCTACTCCTGTGGGTATTTGAGTTGGAATCTAGTCTAACCAAGATGAAGCTAACCTACTTTATCCAGTTAACAAGTTTTACTTAATGTAATAGAGCTTTTTGGGCCATAGGGTTGTTTTGAGTCTATTTATTTAGTTTGTCGTCAATATGATTGTTGCAACATTGTTATTTACATTTGATGTGTTTTTTAAATTGTAAAGCTTATAGAGTCATAAGGGAATTATACATGTTCTGTTGACTTATGAATCATTTATAAATATTCAGTTAACAGAAGTGGCATTTATTTGTGTCTAGTTTAAAAGCTTCACTTTTTATCAGTTAGAGAAGTAAAATGGATTCTTTTTATACTTAATAGTGATGTTGATTTTGGTACGTTCAAATGCTGAATCATTTAACTGAGGCTGACGTTACTTTAGTTCACCTACTGGAGGACCTTCTGTGCACAAATTTGTTATCTACTTACTGACAATTTCTAAAGCATTTATCTTTTTGGCTCCATTGGTACTAACTCTGGACTCTCTGAGCATATTACTTAACCAGAAAAGGGTTATCTCACAAAATTTGACCATTGTACAACGATAGATGTTCTATTTTGGCCTTGTTGCTAGCATTTAAATGGTAAAGTTCCCTCTTACAGCAGTTCACAGTGAATTGCTTGATTCCATAGGTTTAAGATGTCTGTGATACGAAGTTGTGGACTTGTGGTCCACTTCAGATTTTAGTGCTCTGTACATTTTGTCCTGGCTTCCTCCCCACACTACACCCACAGACCAAAAAGAGAAACAAGATCTCTCTGTTCTCCAAACTCCAGGATAAGTGTTCATGAGATTTCTGTATATGTACGATGTGTGTGCTTATTGTCATATTGATTACCGAAAAGTTGGGCATTGATAAATATTTGCGTGGTAGTTGATAAGTTGGTGCATGGTGAGCCCTATTAGCAATTTGATCTCATCTCCATTCGAAAGTAGGACATTGTTCATTAATTCTAAATGGTATGCTTTGAAGTTGAACGGAGAAATAAATGAGAGTTTTGTTTAGTCCACACTCCACACTCTATTTAGCTGCTGTTGTGGAATCATGGAGAATGTCATTATTTACCATTTACTTTACATTGTTCGCCTTTGGAAATATTTTAACTCTTTGACTTTTTTACTAGGATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATGGTATGGAAAATTTTATTTTATCTGTCTGTTTCATAGTTGAATCTCTTACCATATACTTTACATGTCGTGTGTTATATTTACAGCTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAATGTATGTGTACTTTTATCTTTGGTTGACCTTAAAAACTGTATCGGATGTTCACTTGTGAGTCTTCATGTTTTCATCTTCTAATATTCCCTCTTCTCAGAACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCA</genome_strand>
        <mrna_strand>AGAAACTG-AAAAAGTATCTTCAAAAAAATTGTAGTGAGAGAGGATTTGCAGTAATCGGAGATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCCAAAGACAGCCCACTCCGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG...................................................................................CTGAGGGTGCGGAGAATGGCTTATAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAAGTGTTCCAAGAGTATTAGCTTGCTTTAGTAAT.................................................................................................AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331960" ref_strand="+" ref_description="SGN-U331960        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: gi|47824994|gb|AAT38766.1| putative polyprotein [Solanum demissum] (evalue: 5e-40, score=165)">
      <seq>gatagtaaaactgttggatcacaagtgcaggaacttcaacttattctccatgatctgattgctgaagatatggtggtaaatgaagcttttcaagtggctgcaatgatcgagaagttgcctccttggtggaatgatttcaagaattatctaaagcacaagcgtaaagtaatgaagcttgaagatcttgtgattcatctcaagattgaggaagataacagaaatgccgaaaagaagtcgcgtaagagttcaacaatcattggagttaatattgttgaagaagctcttaccaaagacaaaaagtgaaagaagtccaacgggcagaagtcagaacaggccaagaagaaattcaaaggcaactcttataattgtggcaaggctggtcatagatcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="120742" stop="119748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120442" g_stop="120048" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-U331960" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120442" e_stop="120048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAATAGAAATGCCGAAAAGAAGTCGCATAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAAAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</genome_strand>
        <mrna_strand>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTGGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTGGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGTAATGAAGCTTGAAGATCTTGTGATTCATCTCAAGATTGAGGAAGATAACAGAAATGCCGAAAAGAAGTCGCGTAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCTTACCAAAGACAAAAAGTGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAGAAATTCAAAGGCAACTCTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338416" ref_strand="+" ref_description="SGN-U338416        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47900688|gb|AAT39287.1| putative polyprotein [Solanum demissum] (evalue: 3e-23, score=112)">
      <seq>aacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0072I13-VHrs5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0072I13.1" temp_strand="-" temp_description="C11HBa0072I13.1  AC217002.1 htgs_phase:3 submitted_to_sgn_as:gi|166159190|gb|AC217002.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0072I13, complete sequence">
        <position start="124320" stop="123370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124020" g_stop="123669" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0072I13.1" gen_strand="-" ref_id="SGN-U338416" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0072I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124020" e_stop="123669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATGATCTTGCAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCAAGGGGGATGGGATTGAAGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTCCCCTCCCTATGATGTGAGTGCATTATTTTCTGTAGTTTGTGAAGGTTGAGTTGATAAAAC</genome_strand>
        <mrna_strand>AACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTATTTTTT-CCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7917" PGL_stop="1524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7917" e_stop="7825"/>
            <exon e_start="6840" e_stop="6721"/>
            <exon e_start="5171" e_stop="5057"/>
            <exon e_start="4931" e_stop="4876"/>
            <exon e_start="4014" e_stop="3967"/>
            <exon e_start="3860" e_stop="3763"/>
            <exon e_start="2993" e_stop="2924"/>
            <exon e_start="2741" e_stop="2631"/>
            <exon e_start="1886" e_stop="1524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.852" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.390" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7917" e_stop="7825" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.899">
            <gDNA_intron_boundary i_start="7824" i_stop="6841" i_length="984"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6840" e_stop="6721" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6720" i_stop="5172" i_length="1549"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5171" e_stop="5057" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.898" acc_prob="0.852">
            <gDNA_intron_boundary i_start="5056" i_stop="4932" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4931" e_stop="4876" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4875" i_stop="4015" i_length="861"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4014" e_stop="3967" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.390" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3966" i_stop="3861" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3860" e_stop="3763" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.952" acc_prob="0.990">
            <gDNA_intron_boundary i_start="3762" i_stop="2994" i_length="769"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2993" e_stop="2924" e_length="70"/>
          </exon>
          <intron i_serial="7" don_prob="0.881" acc_prob="0.992">
            <gDNA_intron_boundary i_start="2923" i_stop="2742" i_length="182"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="2741" e_stop="2631" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2630" i_stop="1887" i_length="744"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="1886" e_stop="1524" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7917" stop="7825"/>
              <exon start="6840" stop="6721"/>
              <exon start="5171" stop="5057"/>
              <exon start="4931" stop="4876"/>
              <exon start="4014" stop="3967"/>
              <exon start="3860" stop="3763"/>
              <exon start="2993" stop="2924"/>
              <exon start="2741" stop="2631"/>
              <exon start="1886" stop="1524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTATATTCCTGTGACCGCCACTCTCCGCTTTACTCCTCCTCTATATCTTTTTCCGGCGGCCGGCAGCTCCTTCTTCAGCTTCGTGAATTCTG : ATTGTTTTGACAGAGATGGGTGCCAAAGGGAGGAAGAAAAGCATAACTAAGAAGTTGAAGAAGGGTGCTAACGAATTCTCAGCTTCTTCGGTTTCTAAAGATAAAGCTGCTGACTTTCTG : CCATTGGAAGGTGGGCCGGCAAGAAAACTCCCGGATACTGAAGTACGGGAAAGTAAAGCGACAATATTGTATATTGGAAGGATTCCACATGGATTTTATGAGAATGAAATGGAAG : GTTTCTTTAAGCAATTTGGTACAATTAAGAGGCTTAGACTTGCAAGGAATAAAAAG : ACGGGAAAATCAAAGCATTTTGGCTTCATAGAATTTGAGTCCCCTGAG : GTTGCTAAAGTGGTTGCGGATACCATGCATAACTATCTATTATTTGAGCACTTGTTGCAAGTTCGTCTTATTCCTCCTGAGCATGTTCATCCCAGATT : GTGGAAAGGTGTGAACCGCTGGTACAAACCGTTGGACTGGGTTAAAATTGAAAGGAAGCGTCAGGACAAG : GAAAGAACATTGGAAGAGCATAATAAGTTGGTTGGAGAAATTCTAAAACGTGACAAAAAGAGGCGAAAGAGGATCGAGGCAGCTGGGATTGATTACGAGTGCCCAGAAATG : GTGGGTGCAATTCAGGCTGCACCAAAGAAGATCAGGTTCACTGATTAGATCTTTATAAGTATAGCTCGTGAACGAAATAGTATCTATGGCGACAAGTAGATTACTATGTGTATGCACGGTGTAACTGAAGATCAGCTGAACTGACAGATGAACGGCCACATTATTTTGCTGCAGAGTAAACTAATGATATTGTCAAAGGCTCGTTTAGCTATCGATAACTATGGATTTCTTTTATTTTGAAAATTAGAAGAGAAAAAAGTGGTTGTATAACTTAGAAAAGACAAAGGAAGACCTTGACAATTTAATCTATTGATTGTATACCGTGAATCCATCTATCATCTATTTATTGTAAAGCATTTTGTC</gDNA_template>
            <first_frame> P  I  F  L  *  P  P  L  S  A  L  L  L  L  Y  I  F  F  R  R  P  A  A  P  S  S  A  S  *  I  L  :  I  V  L  T  E  M  G  A  K  G  R  K  K  S  I  T  K  K  L  K  K  G  A  N  E  F  S  A  S  S  V  S  K  D  K  A  A  D  F  L  :  P  L  E  G  G  P  A  R  K  L  P  D  T  E  V  R  E  S  K  A  T  I  L  Y  I  G  R  I  P  H  G  F  Y  E  N  E  M  E   : G  F  F  K  Q  F  G  T  I  K  R  L  R  L  A  R  N  K  K  :  T  G  K  S  K  H  F  G  F  I  E  F  E  S  P  E  :  V  A  K  V  V  A  D  T  M  H  N  Y  L  L  F  E  H  L  L  Q  V  R  L  I  P  P  E  H  V  H  P  R  L :   W  K  G  V  N  R  W  Y  K  P  L  D  W  V  K  I  E  R  K  R  Q  D  K  :  E  R  T  L  E  E  H  N  K  L  V  G  E  I  L  K  R  D  K  K  R  R  K  R  I  E  A  A  G  I  D  Y  E  C  P  E  M  :  V  G  A  I  Q  A  A  P  K  K  I  R  F  T  D  *  I  F  I  S  I  A  R  E  R  N  S  I  Y  G  D  K  *  I  T  M  C  M  H  G  V  T  E  D  Q  L  N  *  Q  M  N  G  H  I  I  L  L  Q  S  K  L  M  I  L  S  K  A  R  L  A  I  D  N  Y  G  F  L  L  F  *  K  L  E  E  K  K  V  V  V  *  L  R  K  D  K  G  R  P  *  Q  F  N  L  L  I  V  Y  R  E  S  I  Y  H  L  F  I  V  K  H  F  V </first_frame>
            <second_frame>  L  Y  S  C  D  R  H  S  P  L  Y  S  S  S  I  S  F  S  G  G  R  Q  L  L  L  Q  L  R  E  F  * :   L  F  *  Q  R  W  V  P  K  G  G  R  K  A  *  L  R  S  *  R  R  V  L  T  N  S  Q  L  L  R  F  L  K  I  K  L  L  T  F  C :   H  W  K  V  G  R  Q  E  N  S  R  I  L  K  Y  G  K  V  K  R  Q  Y  C  I  L  E  G  F  H  M  D  F  M  R  M  K  W  K  :  V  S  L  S  N  L  V  Q  L  R  G  L  D  L  Q  G  I  K  R :   R  E  N  Q  S  I  L  A  S  *  N  L  S  P  L  R :   L  L  K  W  L  R  I  P  C  I  T  I  Y  Y  L  S  T  C  C  K  F  V  L  F  L  L  S  M  F  I  P  D   : C  G  K  V  *  T  A  G  T  N  R  W  T  G  L  K  L  K  G  S  V  R  T  R :   K  E  H  W  K  S  I  I  S  W  L  E  K  F  *  N  V  T  K  R  G  E  R  G  S  R  Q  L  G  L  I  T  S  A  Q  K  W :   W  V  Q  F  R  L  H  Q  R  R  S  G  S  L  I  R  S  L  *  V  *  L  V  N  E  I  V  S  M  A  T  S  R  L  L  C  V  C  T  V  *  L  K  I  S  *  T  D  R  *  T  A  T  L  F  C  C  R  V  N  *  *  Y  C  Q  R  L  V  *  L  S  I  T  M  D  F  F  Y  F  E  N  *  K  R  K  K  W  L  Y  N  L  E  K  T  K  E  D  L  D  N  L  I  Y  *  L  Y  T  V  N  P  S  I  I  Y  L  L  *  S  I  L   </second_frame>
            <third_frame>   Y  I  P  V  T  A  T  L  R  F  T  P  P  L  Y  L  F  P  A  A  G  S  S  F  F  S  F  V  N  S   : D  C  F  D  R  D  G  C  Q  R  E  E  E  K  H  N  *  E  V  E  E  G  C  *  R  I  L  S  F  F  G  F  *  R  *  S  C  *  L  S   : A  I  G  R  W  A  G  K  K  T  P  G  Y  *  S  T  G  K  *  S  D  N  I  V  Y  W  K  D  S  T  W  I  L  *  E  *  N  G  R :   F  L  *  A  I  W  Y  N  *  E  A  *  T  C  K  E  *  K   : D  G  K  I  K  A  F  W  L  H  R  I  *  V  P  *   : G  C  *  S  G  C  G  Y  H  A  *  L  S  I  I  *  A  L  V  A  S  S  S  Y  S  S  *  A  C  S  S  Q  I  :  V  E  R  C  E  P  L  V  Q  T  V  G  L  G  *  N  *  K  E  A  S  G  Q   : G  K  N  I  G  R  A  *  *  V  G  W  R  N  S  K  T  *  Q  K  E  A  K  E  D  R  G  S  W  D  *  L  R  V  P  R  N   : G  G  C  N  S  G  C  T  K  E  D  Q  V  H  *  L  D  L  Y  K  Y  S  S  *  T  K  *  Y  L  W  R  Q  V  D  Y  Y  V  Y  A  R  C  N  *  R  S  A  E  L  T  D  E  R  P  H  Y  F  A  A  E  *  T  N  D  I  V  K  G  S  F  S  Y  R  *  L  W  I  S  F  I  L  K  I  R  R  E  K  S  G  C  I  T  *  K  R  Q  R  K  T  L  T  I  *  S  I  D  C  I  P  *  I  H  L  S  S  I  Y  C  K  A  F  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7830" stop="7825"/>
                    <exon start="6840" stop="6721"/>
                    <exon start="5171" stop="5057"/>
                    <exon start="4931" stop="4876"/>
                    <exon start="4014" stop="3967"/>
                    <exon start="3860" stop="3763"/>
                    <exon start="2993" stop="2924"/>
                    <exon start="2741" stop="2631"/>
                    <exon start="1886" stop="1839"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILIVLTEMGAKGRKKSITKKLKKGANEFSASSVSKDKAADFLPLEGGPARKLPDTEVRESKATILYIGRIPHGFYENEMEGFFKQFGTIKRLRLARNKKTGKSKHFGFIEFESPEVAKVVADTMHNYLLFEHLLQVRLIPPEHVHPRLWKGVNRWYKPLDWVKIERKRQDKERTLEEHNKLVGEILKRDKKRRKRIEAAGIDYECPEMVGAIQAAPKKIRFTD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="21046" PGL_stop="26403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21046" e_stop="21321"/>
            <exon e_start="26261" e_stop="26403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21046" e_stop="21321" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21322" i_stop="26260" i_length="4939"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26261" e_stop="26403" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21046" stop="21321"/>
              <exon start="26261" stop="26403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATTTTTTCGTTGTAGCTCGCCGGTATCGATTAGTCGGAGTACGGTGGTTGTTGGATCTGCCGATGGCGGAAGAGGAGGAGAGGAACGGCGGTGAGCGGAGTGAGACGAGTGACTACACATCGGAGGATGAAGGTACTGAAGATTACAGGCGTGGAGGTTATCACGCTGTTCGAATCGGAGATACATTCAAACAAGGACGATATGTAGTGCAGAGTAAGCTTGGTTGGGGACATTTCTCTACTGTTTGGCTCGCTTGGGATACGCAAAAATCT : AGGTTTGTTGCTCTAAAAGTTCAAAAGAGTGCTCAACATTATACAGAAGCGGCTATGGATGAGATTACCATATTAAAGCAGATTGCAGAGGGAGATCCAGATGATAAGAAGTGTGTGGTGAAGTTATTGGATCACTTTAAGCA</gDNA_template>
            <first_frame> F  D  F  F  V  V  A  R  R  Y  R  L  V  G  V  R  W  L  L  D  L  P  M  A  E  E  E  E  R  N  G  G  E  R  S  E  T  S  D  Y  T  S  E  D  E  G  T  E  D  Y  R  R  G  G  Y  H  A  V  R  I  G  D  T  F  K  Q  G  R  Y  V  V  Q  S  K  L  G  W  G  H  F  S  T  V  W  L  A  W  D  T  Q  K  S  :  R  F  V  A  L  K  V  Q  K  S  A  Q  H  Y  T  E  A  A  M  D  E  I  T  I  L  K  Q  I  A  E  G  D  P  D  D  K  K  C  V  V  K  L  L  D  H  F  K   </first_frame>
            <second_frame>  L  I  F  S  L  *  L  A  G  I  D  *  S  E  Y  G  G  C  W  I  C  R  W  R  K  R  R  R  G  T  A  V  S  G  V  R  R  V  T  T  H  R  R  M  K  V  L  K  I  T  G  V  E  V  I  T  L  F  E  S  E  I  H  S  N  K  D  D  M  *  C  R  V  S  L  V  G  D  I  S  L  L  F  G  S  L  G  I  R  K  N  L :   G  L  L  L  *  K  F  K  R  V  L  N  I  I  Q  K  R  L  W  M  R  L  P  Y  *  S  R  L  Q  R  E  I  Q  M  I  R  S  V  W  *  S  Y  W  I  T  L  S  </second_frame>
            <third_frame>   *  F  F  R  C  S  S  P  V  S  I  S  R  S  T  V  V  V  G  S  A  D  G  G  R  G  G  E  E  R  R  *  A  E  *  D  E  *  L  H  I  G  G  *  R  Y  *  R  L  Q  A  W  R  L  S  R  C  S  N  R  R  Y  I  Q  T  R  T  I  C  S  A  E  *  A  W  L  G  T  F  L  Y  C  L  A  R  L  G  Y  A  K  I   : *  V  C  C  S  K  S  S  K  E  C  S  T  L  Y  R  S  G  Y  G  *  D  Y  H  I  K  A  D  C  R  G  R  S  R  *  *  E  V  C  G  E  V  I  G  S  L  *  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21046" stop="21321"/>
                    <exon start="26261" stop="26401"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDFFVVARRYRLVGVRWLLDLPMAEEEERNGGERSETSDYTSEDEGTEDYRRGGYHAVRIGDTFKQGRYVVQSKLGWGHFSTVWLAWDTQKSRFVALKVQKSAQHYTEAAMDEITILKQIAEGDPDDKKCVVKLLDHFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26929" PGL_stop="29687"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26929" e_stop="27241"/>
            <exon e_start="29297" e_stop="29344"/>
            <exon e_start="29461" e_stop="29687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.011" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26929" e_stop="27241" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="27242" i_stop="29296" i_length="2055"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29297" e_stop="29344" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.011">
            <gDNA_intron_boundary i_start="29345" i_stop="29460" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="29461" e_stop="29687" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26929" stop="27241"/>
              <exon start="29297" stop="29344"/>
              <exon start="29461" stop="29687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336743" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAACAGATGGAACAAGGGATGGACAGCAGAGAACTCAAAGATCTAAAAGAGGCAGTCGATCCATGAGGCAGAAACTATTGACTGATGTGGACCTTAGGTGCAAATTAGTTGACTTTGGCAATGCATGCTGGACGTATAAACAATTCACAAGTGATATCCAGACAAGACAGTATAGATGTCCTGAGGTTATCCTAGGATCTAAATATTCTACTTCAGCTGATCTTTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCACACAGTGGTGACAATTATGACAGGGATGAG : GATCACTTGGCCCTTATGATGGAGCTTCTTGGAATGATGCCACGCAAG : ATTGCCTTAGGTGGGCGTTATTCACGAGAGCTCTTCAACCGAAGTGGAGACTTGAGACATATCAGACGATTGCGGTTCTGGCCTATGAATAAAGTGCTTAGGGAAAAGTATGAGTTCAGTGAACAAGATGCTCATGAACTGGCTGATTTCTTAGTTCCAATACTTGATTTTGTGCCTGAGAAAAGACCTACTGCAGCTCAATGTCTCAATCATCCATGGATTGCTGA</gDNA_template>
            <first_frame> N  N  R  W  N  K  G  W  T  A  E  N  S  K  I  *  K  R  Q  S  I  H  E  A  E  T  I  D  *  C  G  P  *  V  Q  I  S  *  L  W  Q  C  M  L  D  V  *  T  I  H  K  *  Y  P  D  K  T  V  *  M  S  *  G  Y  P  R  I  *  I  F  Y  F  S  *  S  L  V  L  C  L  H  L  L  *  A  C  H  W  *  C  S  F  *  S  T  Q  W  *  Q  L  *  Q  G  *   : G  S  L  G  P  Y  D  G  A  S  W  N  D  A  T  Q   : D  C  L  R  W  A  L  F  T  R  A  L  Q  P  K  W  R  L  E  T  Y  Q  T  I  A  V  L  A  Y  E  *  S  A  *  G  K  V  *  V  Q  *  T  R  C  S  *  T  G  *  F  L  S  S  N  T  *  F  C  A  *  E  K  T  Y  C  S  S  M  S  Q  S  S  M  D  C  * </first_frame>
            <second_frame>  T  T  D  G  T  R  D  G  Q  Q  R  T  Q  R  S  K  R  G  S  R  S  M  R  Q  K  L  L  T  D  V  D  L  R  C  K  L  V  D  F  G  N  A  C  W  T  Y  K  Q  F  T  S  D  I  Q  T  R  Q  Y  R  C  P  E  V  I  L  G  S  K  Y  S  T  S  A  D  L  W  S  F  A  C  I  C  F  E  L  A  T  G  D  V  L  F  D  P  H  S  G  D  N  Y  D  R  D  E  :  D  H  L  A  L  M  M  E  L  L  G  M  M  P  R  K  :  I  A  L  G  G  R  Y  S  R  E  L  F  N  R  S  G  D  L  R  H  I  R  R  L  R  F  W  P  M  N  K  V  L  R  E  K  Y  E  F  S  E  Q  D  A  H  E  L  A  D  F  L  V  P  I  L  D  F  V  P  E  K  R  P  T  A  A  Q  C  L  N  H  P  W  I  A   </second_frame>
            <third_frame>   Q  Q  M  E  Q  G  M  D  S  R  E  L  K  D  L  K  E  A  V  D  P  *  G  R  N  Y  *  L  M  W  T  L  G  A  N  *  L  T  L  A  M  H  A  G  R  I  N  N  S  Q  V  I  S  R  Q  D  S  I  D  V  L  R  L  S  *  D  L  N  I  L  L  Q  L  I  F  G  P  L  L  A  F  A  L  S  L  P  L  V  M  F  F  L  I  H  T  V  V  T  I  M  T  G  M  R :   I  T  W  P  L  *  W  S  F  L  E  *  C  H  A  R :   L  P  *  V  G  V  I  H  E  S  S  S  T  E  V  E  T  *  D  I  S  D  D  C  G  S  G  L  *  I  K  C  L  G  K  S  M  S  S  V  N  K  M  L  M  N  W  L  I  S  *  F  Q  Y  L  I  L  C  L  R  K  D  L  L  Q  L  N  V  S  I  I  H  G  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26930" stop="27241"/>
                    <exon start="29297" stop="29344"/>
                    <exon start="29461" stop="29685"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTDGTRDGQQRTQRSKRGSRSMRQKLLTDVDLRCKLVDFGNACWTYKQFTSDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRELFNRSGDLRHIRRLRFWPMNKVLREKYEFSEQDAHELADFLVPILDFVPEKRPTAAQCLNHPWIA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="30458" PGL_stop="30737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30458" e_stop="30737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="30458" e_stop="30737" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30458" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCCACGTATATAACGTAAAGATAAATTTATATCAAAAGGGGTAATTATATCAAATATCATTATTGTCAACACTTGGCTAGGAAAGAGGAAATGATATGAGAAGTCTTCTCAAATGGCACACTTGTTCAACTTACTCGCCACTAGCATATACTGTGTTCAAAGCCAGCAACATGCACAATGACATTTCACACGTAAGGCATGAAGAGGGTGGTTTACATAGCCTCAAACAAAGCTAGAGATTCTCTTTTTGATATATTCTCAGCTCATATATAAGCTTT</gDNA_template>
            <first_frame> R  P  R  I  *  R  K  D  K  F  I  S  K  G  V  I  I  S  N  I  I  I  V  N  T  W  L  G  K  R  K  *  Y  E  K  S  S  Q  M  A  H  L  F  N  L  L  A  T  S  I  Y  C  V  Q  S  Q  Q  H  A  Q  *  H  F  T  R  K  A  *  R  G  W  F  T  *  P  Q  T  K  L  E  I  L  F  L  I  Y  S  Q  L  I  Y  K  L  </first_frame>
            <second_frame>  G  H  V  Y  N  V  K  I  N  L  Y  Q  K  G  *  L  Y  Q  I  S  L  L  S  T  L  G  *  E  R  G  N  D  M  R  S  L  L  K  W  H  T  C  S  T  Y  S  P  L  A  Y  T  V  F  K  A  S  N  M  H  N  D  I  S  H  V  R  H  E  E  G  G  L  H  S  L  K  Q  S  *  R  F  S  F  *  Y  I  L  S  S  Y  I  S  F </second_frame>
            <third_frame>   A  T  Y  I  T  *  R  *  I  Y  I  K  R  G  N  Y  I  K  Y  H  Y  C  Q  H  L  A  R  K  E  E  M  I  *  E  V  F  S  N  G  T  L  V  Q  L  T  R  H  *  H  I  L  C  S  K  P  A  T  C  T  M  T  F  H  T  *  G  M  K  R  V  V  Y  I  A  S  N  K  A  R  D  S  L  F  D  I  F  S  A  H  I  *  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0072I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="36512" PGL_stop="30471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34986" e_stop="33753"/>
            <exon e_start="32843" e_stop="32761"/>
            <exon e_start="31820" e_stop="31777"/>
            <exon e_start="31670" e_stop="31552"/>
            <exon e_start="31097" e_stop="30471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34986" e_stop="33753" e_length="1234"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32843" e_stop="32761" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.901" acc_prob="0.968">
            <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31820" e_stop="31777" e_length="44"/>
          </exon>
          <intron i_serial="3" don_prob="0.727" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31670" e_stop="31552" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="31551" i_stop="31098" i_length="454"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31097" e_stop="30471" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34986" stop="33753"/>
              <exon start="32843" stop="32761"/>
              <exon start="31820" stop="31777"/>
              <exon start="31670" stop="31552"/>
              <exon start="31097" stop="30471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30733" stop="30471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317761" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACCTTCCACTCAACTCCACATAACTTTGTTAATCTCATATTGTTTTACAGAACTCGCTTTTACTTTGGTAGGCATCTTATAGTTGCATATGCCAATATTGTGGCACCTTCAGTATGATCATTCTAGTTTAATCATGTGTTACAGCTTTCCTATTATGCTTTTCTCCTGCACACTGAACCTAGATATCTTGATTTTTTGCATTTAGGCACTACAATCCCTTTAGTTCCACTTCAACTCATTTTTCTTATGGGAGCTAAACCTAAAGTACATATCTTTTGCCTTCACTTCTAATTATTCTAAAACCCTTGCTCTCTAGAGTGCATAACTAACTTTTTAACCACTGCACTAATATTTTCTTCACTATCATTATAATATAAATATGTCAAAATTAACTTAAACTCCATAAACTAGGTCAGACCAATAGATAATATCTACAAATGTGAAGAAGAAAAGAAATTGGAAAAATAAGATAAATTGGTCCTTATTAGACACGAAGTATCAACTCTGTGACTCGATTGATTATGCAAGTGTATAACTGAGTAGGAGTTATGATTATATTCTTATAATAGAATACACCACCAACATATCTAGTGTAGTCTCACAAACAGTGTTTGAGGAGGGTAGAGTGTACGTAAACCTTACCCCTTATCTTGAGAGGTAGAGATATTGTTTCCTATAGATCCTCGCCTCAAAGAAAAGCGTATCAAAGAAGATCGGAAACATAAATAACGAAGTGAAGAAATCATAGGAAAGCATTCTGAAGAAAGAACAGTAATTACAACAAAATAGTGTGATAACCGCAGTACAAGAGACAGTGAATAGTGATAGATAAGAACCTGGAGAGAAACTGCATACGCTATCCTTGAAGTGCATTGAAGGTAATCTTTAAGTAATCCACTTTTTTCTTATACATACCACTCACACTTCCTATATTTTGAATTTTATATTCATGGCAAATTATATGACAGTTAGAGCATAGTGGTCCAAACAATAAAAAATTTAAAAGCAAATAATCAAATTTTTGGTCCACAATAAAGCATTTTTTTATGATCATATAGAAAATCTTGAGCCATCCTTTCCTGATTTGTCTGTACTAAATATTAGTTTGGTAAGTTACTGAAACAGGTTTCCATTTGTTCATCCAACTGCAGATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG : TTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAG : GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG : TTTGCATTCTGGCTTACAACAGCAGGAATAATTGTTGGGGCTGTTCTGGCCTTTTATCTCATGTACTGGTATCTCAGAACGAGGAAAATACTGTAAACAACGCCTGATTCCACAATCAG : GTGATGTAAATCTTTAACCAAGATTGAGCTTTCAACTGCAGTGGGTGCCCAAAAAGATGCCGCATATACTAGCATATTCTGCAGCATGTCTGGATAGTAGGATCATTGTGCATCAATATGATGCTTCGCAGACACTGCCAATATAATGGCGAAAACAACAAAATTAGGTATGCAATATGTCCCCAGTCAAGATCCGTAGAATGAGAGAGAAGGCGACAATCTAATCTTCCTCAAGTTATATACCATGGGTGCCAATTAGGAGTAGCCATCACTCTCTTTTACCAGCTTGTTATGTAGTCTAGCATAATCTCCCACCACACGTTGCCAAGACATTCAGACAGCGAAGATATTGCGTCCGTAAAAGCTTATATATGAGCTGAGAATATATCAAAAAGAGAATCTCTAGCTTTGTTTGAGGCTATGTAAACCACCCTCTTCATGCCTTACGTGTGAAATGTCATTGTGCATGTTGCTGGCTTTGAACACAGTATATGCTAGTGGCGAGTAAGTTGAACAAGTGTGCCATTTGAGAAGACTTCTCATATCATTTCCTCTTTCCTAGCCAAGTGTTGACAATAATGATATTTGATATAATTACCCCTTTTGATATAAATTTATCTTTACGTT</gDNA_template>
            <first_frame> *  P  S  T  Q  L  H  I  T  L  L  I  S  Y  C  F  T  E  L  A  F  T  L  V  G  I  L  *  L  H  M  P  I  L  W  H  L  Q  Y  D  H  S  S  L  I  M  C  Y  S  F  P  I  M  L  F  S  C  T  L  N  L  D  I  L  I  F  C  I  *  A  L  Q  S  L  *  F  H  F  N  S  F  F  L  W  E  L  N  L  K  Y  I  S  F  A  F  T  S  N  Y  S  K  T  L  A  L  *  S  A  *  L  T  F  *  P  L  H  *  Y  F  L  H  Y  H  Y  N  I  N  M  S  K  L  T  *  T  P  *  T  R  S  D  Q  *  I  I  S  T  N  V  K  K  K  R  N  W  K  N  K  I  N  W  S  L  L  D  T  K  Y  Q  L  C  D  S  I  D  Y  A  S  V  *  L  S  R  S  Y  D  Y  I  L  I  I  E  Y  T  T  N  I  S  S  V  V  S  Q  T  V  F  E  E  G  R  V  Y  V  N  L  T  P  Y  L  E  R  *  R  Y  C  F  L  *  I  L  A  S  K  K  S  V  S  K  K  I  G  N  I  N  N  E  V  K  K  S  *  E  S  I  L  K  K  E  Q  *  L  Q  Q  N  S  V  I  T  A  V  Q  E  T  V  N  S  D  R  *  E  P  G  E  K  L  H  T  L  S  L  K  C  I  E  G  N  L  *  V  I  H  F  F  L  I  H  T  T  H  T  S  Y  I  L  N  F  I  F  M  A  N  Y  M  T  V  R  A  *  W  S  K  Q  *  K  I  *  K  Q  I  I  K  F  L  V  H  N  K  A  F  F  Y  D  H  I  E  N  L  E  P  S  F  P  D  L  S  V  L  N  I  S  L  V  S  Y  *  N  R  F  P  F  V  H  P  T  A  D  V  N  L  A  M  V  K  L  K  G  S  L  I  L  Q  K  K  W  K  T  Q  L  L  *  T  *   : V  L  E  G  L  R  *  A  D  L  S  *  F  Y  R  L  E  H  F  V  L  L  L  V  L  W  *  Q  :  V  Y  L  A  *  T  *  D  P  I  *  R  N  M  C :   L  H  S  G  L  Q  Q  Q  E  *  L  L  G  L  F  W  P  F  I  S  C  T  G  I  S  E  R  G  K  Y  C  K  Q  R  L  I  P  Q  S   : G  D  V  N  L  *  P  R  L  S  F  Q  L  Q  W  V  P  K  K  M  P  H  I  L  A  Y  S  A  A  C  L  D  S  R  I  I  V  H  Q  Y  D  A  S  Q  T  L  P  I  *  W  R  K  Q  Q  N  *  V  C  N  M  S  P  V  K  I  R  R  M  R  E  K  A  T  I  *  S  S  S  S  Y  I  P  W  V  P  I  R  S  S  H  H  S  L  L  P  A  C  Y  V  V  *  H  N  L  P  P  H  V  A  K  T  F  R  Q  R  R  Y  C  V  R  K  S  L  Y  M  S  *  E  Y  I  K  K  R  I  S  S  F  V  *  G  Y  V  N  H  P  L  H  A  L  R  V  K  C  H  C  A  C  C  W  L  *  T  Q  Y  M  L  V  A  S  K  L  N  K  C  A  I  *  E  D  F  S  Y  H  F  L  F  P  S  Q  V  L  T  I  M  I  F  D  I  I  T  P  F  D  I  N  L  S  L  R  </first_frame>
            <second_frame>  D  L  P  L  N  S  T  *  L  C  *  S  H  I  V  L  Q  N  S  L  L  L  W  *  A  S  Y  S  C  I  C  Q  Y  C  G  T  F  S  M  I  I  L  V  *  S  C  V  T  A  F  L  L  C  F  S  P  A  H  *  T  *  I  S  *  F  F  A  F  R  H  Y  N  P  F  S  S  T  S  T  H  F  S  Y  G  S  *  T  *  S  T  Y  L  L  P  S  L  L  I  I  L  K  P  L  L  S  R  V  H  N  *  L  F  N  H  C  T  N  I  F  F  T  I  I  I  I  *  I  C  Q  N  *  L  K  L  H  K  L  G  Q  T  N  R  *  Y  L  Q  M  *  R  R  K  E  I  G  K  I  R  *  I  G  P  Y  *  T  R  S  I  N  S  V  T  R  L  I  M  Q  V  Y  N  *  V  G  V  M  I  I  F  L  *  *  N  T  P  P  T  Y  L  V  *  S  H  K  Q  C  L  R  R  V  E  C  T  *  T  L  P  L  I  L  R  G  R  D  I  V  S  Y  R  S  S  P  Q  R  K  A  Y  Q  R  R  S  E  T  *  I  T  K  *  R  N  H  R  K  A  F  *  R  K  N  S  N  Y  N  K  I  V  *  *  P  Q  Y  K  R  Q  *  I  V  I  D  K  N  L  E  R  N  C  I  R  Y  P  *  S  A  L  K  V  I  F  K  *  S  T  F  F  L  Y  I  P  L  T  L  P  I  F  *  I  L  Y  S  W  Q  I  I  *  Q  L  E  H  S  G  P  N  N  K  K  F  K  S  K  *  S  N  F  W  S  T  I  K  H  F  F  M  I  I  *  K  I  L  S  H  P  F  L  I  C  L  Y  *  I  L  V  W  *  V  T  E  T  G  F  H  L  F  I  Q  L  Q  M  *  I  L  P  W  S  S  *  K  A  P  *  F  C  K  R  N  G  R  L  N  C  C  K  L  E  :  F  S  K  A  *  G  E  Q  I  *  V  D  S  T  G  W  N  I  L  C  C  C  W  C  S  G  S  R :   Y  I  W  H  E  L  K  I  L  S  R  G  T  C   : V  C  I  L  A  Y  N  S  R  N  N  C  W  G  C  S  G  L  L  S  H  V  L  V  S  Q  N  E  E  N  T  V  N  N  A  *  F  H  N  Q  :  V  M  *  I  F  N  Q  D  *  A  F  N  C  S  G  C  P  K  R  C  R  I  Y  *  H  I  L  Q  H  V  W  I  V  G  S  L  C  I  N  M  M  L  R  R  H  C  Q  Y  N  G  E  N  N  K  I  R  Y  A  I  C  P  Q  S  R  S  V  E  *  E  R  R  R  Q  S  N  L  P  Q  V  I  Y  H  G  C  Q  L  G  V  A  I  T  L  F  Y  Q  L  V  M  *  S  S  I  I  S  H  H  T  L  P  R  H  S  D  S  E  D  I  A  S  V  K  A  Y  I  *  A  E  N  I  S  K  R  E  S  L  A  L  F  E  A  M  *  T  T  L  F  M  P  Y  V  *  N  V  I  V  H  V  A  G  F  E  H  S  I  C  *  W  R  V  S  *  T  S  V  P  F  E  K  T  S  H  I  I  S  S  F  L  A  K  C  *  Q  *  *  Y  L  I  *  L  P  L  L  I  *  I  Y  L  Y  V </second_frame>
            <third_frame>   T  F  H  S  T  P  H  N  F  V  N  L  I  L  F  Y  R  T  R  F  Y  F  G  R  H  L  I  V  A  Y  A  N  I  V  A  P  S  V  *  S  F  *  F  N  H  V  L  Q  L  S  Y  Y  A  F  L  L  H  T  E  P  R  Y  L  D  F  L  H  L  G  T  T  I  P  L  V  P  L  Q  L  I  F  L  M  G  A  K  P  K  V  H  I  F  C  L  H  F  *  L  F  *  N  P  C  S  L  E  C  I  T  N  F  L  T  T  A  L  I  F  S  S  L  S  L  *  Y  K  Y  V  K  I  N  L  N  S  I  N  *  V  R  P  I  D  N  I  Y  K  C  E  E  E  K  K  L  E  K  *  D  K  L  V  L  I  R  H  E  V  S  T  L  *  L  D  *  L  C  K  C  I  T  E  *  E  L  *  L  Y  S  Y  N  R  I  H  H  Q  H  I  *  C  S  L  T  N  S  V  *  G  G  *  S  V  R  K  P  Y  P  L  S  *  E  V  E  I  L  F  P  I  D  P  R  L  K  E  K  R  I  K  E  D  R  K  H  K  *  R  S  E  E  I  I  G  K  H  S  E  E  R  T  V  I  T  T  K  *  C  D  N  R  S  T  R  D  S  E  *  *  *  I  R  T  W  R  E  T  A  Y  A  I  L  E  V  H  *  R  *  S  L  S  N  P  L  F  S  Y  T  Y  H  S  H  F  L  Y  F  E  F  Y  I  H  G  K  L  Y  D  S  *  S  I  V  V  Q  T  I  K  N  L  K  A  N  N  Q  I  F  G  P  Q  *  S  I  F  L  *  S  Y  R  K  S  *  A  I  L  S  *  F  V  C  T  K  Y  *  F  G  K  L  L  K  Q  V  S  I  C  S  S  N  C  R  C  E  S  C  H  G  Q  A  E  R  L  L  D  S  A  K  E  M  E  D  S  I  A  V  N  L  S :   S  R  R  L  E  V  S  R  F  E  L  I  L  Q  V  G  T  F  C  V  A  V  G  A  L  V  A   : G  I  F  G  M  N  L  R  S  Y  L  E  E  H  V  :  F  A  F  W  L  T  T  A  G  I  I  V  G  A  V  L  A  F  Y  L  M  Y  W  Y  L  R  T  R  K  I  L  *  T  T  P  D  S  T  I  R :   *  C  K  S  L  T  K  I  E  L  S  T  A  V  G  A  Q  K  D  A  A  Y  T  S  I  F  C  S  M  S  G  *  *  D  H  C  A  S  I  *  C  F  A  D  T  A  N  I  M  A  K  T  T  K  L  G  M  Q  Y  V  P  S  Q  D  P  *  N  E  R  E  G  D  N  L  I  F  L  K  L  Y  T  M  G  A  N  *  E  *  P  S  L  S  F  T  S  L  L  C  S  L  A  *  S  P  T  T  R  C  Q  D  I  Q  T  A  K  I  L  R  P  *  K  L  I  Y  E  L  R  I  Y  Q  K  E  N  L  *  L  C  L  R  L  C  K  P  P  S  S  C  L  T  C  E  M  S  L  C  M  L  L  A  L  N  T  V  Y  A  S  G  E  *  V  E  Q  V  C  H  L  R  R  L  L  I  S  F  P  L  S  *  P  S  V  D  N  N  D  I  *  Y  N  Y  P  F  *  Y  K  F  I  F  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33880" stop="33753"/>
                    <exon start="32843" stop="32761"/>
                    <exon start="31820" stop="31777"/>
                    <exon start="31670" stop="31575"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGKLLKQVSICSSNCRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRFELILQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVLAFYLMYWYLRTRKIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36512" e_stop="36432"/>
            <exon e_start="36350" e_stop="36185"/>
            <exon e_start="36092" e_stop="36047"/>
            <exon e_start="33833" e_stop="33753"/>
            <exon e_start="32843" e_stop="32761"/>
            <exon e_start="31820" e_stop="31777"/>
            <exon e_start="31670" e_stop="31664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.934" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.162" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36512" e_stop="36432" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.934" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36431" i_stop="36351" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36350" e_stop="36185" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36184" i_stop="36093" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36092" e_stop="36047" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.162" acc_prob="0.976">
            <gDNA_intron_boundary i_start="36046" i_stop="33834" i_length="2213"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33833" e_stop="33753" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="33752" i_stop="32844" i_length="909"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32843" e_stop="32761" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.901" acc_prob="0.968">
            <gDNA_intron_boundary i_start="32760" i_stop="31821" i_length="940"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="31820" e_stop="31777" e_length="44"/>
          </exon>
          <intron i_serial="6" don_prob="0.727" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31776" i_stop="31671" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="31670" e_stop="31664" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36512" stop="36432"/>
              <exon start="36350" stop="36185"/>
              <exon start="36092" stop="36047"/>
              <exon start="33833" stop="33753"/>
              <exon start="32843" stop="32761"/>
              <exon start="31820" stop="31777"/>
              <exon start="31670" stop="31664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336271" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCAAGCACTACTTGAGGTTTTGCCCAACCGATTAACTGCAGACATATTGGAGGAACTTCGCATCAGTAAACAGAAACTA : GTGGAATTGGGTTCCAGGGCAGGGGCTCTTAAGCAAATGCTACTTGATATTCTAGAGGATACTCATGAAATACGTCAAATCTGTATAATTGGGAGAAATTGTGTACTTAAGAAAGAAAACGATGAGATAGAGTGCTCGGTGCCCCTAGATAAGGACATTGCAGAAG : AAGAAGAGGAAGAAATTGAAATGCTTTTGGAGAATTATCTTCAGAG : ATGTGAATCTTGCCATGGTCAAGCTGAAAGGCTCCTTGATTCTGCAAAAGAAATGGAAGACTCAATTGCTGTAAACTTGAG : TTCTCGAAGGCTTGAGGTGAGCAGATTTGAGTTGATTCTACAGGTTGGAACATTTTGTGTTGCTGTTGGTGCTCTGGTAGCAG : GTATATTTGGCATGAACTTAAGATCCTATCTAGAGGAACATGTG : TTTGCAT</gDNA_template>
            <first_frame> V  Q  A  L  L  E  V  L  P  N  R  L  T  A  D  I  L  E  E  L  R  I  S  K  Q  K  L  :  V  E  L  G  S  R  A  G  A  L  K  Q  M  L  L  D  I  L  E  D  T  H  E  I  R  Q  I  C  I  I  G  R  N  C  V  L  K  K  E  N  D  E  I  E  C  S  V  P  L  D  K  D  I  A  E   : E  E  E  E  E  I  E  M  L  L  E  N  Y  L  Q  R :   C  E  S  C  H  G  Q  A  E  R  L  L  D  S  A  K  E  M  E  D  S  I  A  V  N  L  S :   S  R  R  L  E  V  S  R  F  E  L  I  L  Q  V  G  T  F  C  V  A  V  G  A  L  V  A   : G  I  F  G  M  N  L  R  S  Y  L  E  E  H  V  :  F  A  </first_frame>
            <second_frame>  S  K  H  Y  L  R  F  C  P  T  D  *  L  Q  T  Y  W  R  N  F  A  S  V  N  R  N  * :   W  N  W  V  P  G  Q  G  L  L  S  K  C  Y  L  I  F  *  R  I  L  M  K  Y  V  K  S  V  *  L  G  E  I  V  Y  L  R  K  K  T  M  R  *  S  A  R  C  P  *  I  R  T  L  Q  K  :  K  K  R  K  K  L  K  C  F  W  R  I  I  F  R   : D  V  N  L  A  M  V  K  L  K  G  S  L  I  L  Q  K  K  W  K  T  Q  L  L  *  T  *   : V  L  E  G  L  R  *  A  D  L  S  *  F  Y  R  L  E  H  F  V  L  L  L  V  L  W  *  Q  :  V  Y  L  A  *  T  *  D  P  I  *  R  N  M  C :   L  H </second_frame>
            <third_frame>   P  S  T  T  *  G  F  A  Q  P  I  N  C  R  H  I  G  G  T  S  H  Q  *  T  E  T   : S  G  I  G  F  Q  G  R  G  S  *  A  N  A  T  *  Y  S  R  G  Y  S  *  N  T  S  N  L  Y  N  W  E  K  L  C  T  *  E  R  K  R  *  D  R  V  L  G  A  P  R  *  G  H  C  R  R :   R  R  G  R  N  *  N  A  F  G  E  L  S  S  E  :  M  *  I  L  P  W  S  S  *  K  A  P  *  F  C  K  R  N  G  R  L  N  C  C  K  L  E  :  F  S  K  A  *  G  E  Q  I  *  V  D  S  T  G  W  N  I  L  C  C  C  W  C  S  G  S  R :   Y  I  W  H  E  L  K  I  L  S  R  G  T  C   : V  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36512" stop="36432"/>
                    <exon start="36350" stop="36185"/>
                    <exon start="36092" stop="36047"/>
                    <exon start="33833" stop="33753"/>
                    <exon start="32843" stop="32761"/>
                    <exon start="31820" stop="31777"/>
                    <exon start="31670" stop="31665"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQALLEVLPNRLTADILEELRISKQKLVELGSRAGALKQMLLDILEDTHEIRQICIIGRNCVLKKENDEIECSVPLDKDIAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRFELILQVGTFCVAVGALVAGIFGMNLRSYLEEHVFA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="40637" PGL_stop="38980"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40637" e_stop="40177"/>
            <exon e_start="39052" e_stop="38980"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.934" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40637" e_stop="40177" e_length="461"/>
          </exon>
          <intron i_serial="1" don_prob="0.934" acc_prob="0.962">
            <gDNA_intron_boundary i_start="40176" i_stop="39053" i_length="1124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39052" e_stop="38980" e_length="73"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40637" stop="40177"/>
              <exon start="39052" stop="38980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACCATTATAACCCTCACATTATCCATATGAATTGGGGAAATATCTAGAAGATTCTCGAGATCTCTCAACTCTTATCGTGATCTCCGGCAGCTTTCTCTGCAATGGCGGCAAATGCTCTGTATTTACTTCAGTTACCGGTTCGATCGCCGGAGTTTCGATTTTTGATTACAGGAGGATACGCGATTTTCCGGTCGAAGATGGAGTTTCCGTTCTCGCGTAAGAATCACGCGATTTCTCTGAGAGCTCGGAAGGTGAGAGTAGTTGAGTGTGTTGCGAAATCGACTGAGATGGAAGCGTTGATGAAGGACGGTGGAGATGATGATAATGATGAAGGTGATGAGGTTCGGGGAGATGATGATAAGGTTGTAACTCATGGAGACTCTGTTAGTTCGCAGAGGAGTGCTTCTGCCTCCGGTGGCGATTCGTTGTCCCTTGGAATCCGTGAACCTGTTTATGAG : GTAGTGGAGGTAAAGACGTGTGGGACGGTAGCAAAAAGGAAAATAAACAGAAGGCACTTGCTGAAGTCCAGTG</gDNA_template>
            <first_frame> N  T  I  I  T  L  T  L  S  I  *  I  G  E  I  S  R  R  F  S  R  S  L  N  S  Y  R  D  L  R  Q  L  S  L  Q  W  R  Q  M  L  C  I  Y  F  S  Y  R  F  D  R  R  S  F  D  F  *  L  Q  E  D  T  R  F  S  G  R  R  W  S  F  R  S  R  V  R  I  T  R  F  L  *  E  L  G  R  *  E  *  L  S  V  L  R  N  R  L  R  W  K  R  *  *  R  T  V  E  M  M  I  M  M  K  V  M  R  F  G  E  M  M  I  R  L  *  L  M  E  T  L  L  V  R  R  G  V  L  L  P  P  V  A  I  R  C  P  L  E  S  V  N  L  F  M  R :   *  W  R  *  R  R  V  G  R  *  Q  K  G  K  *  T  E  G  T  C  *  S  P  V </first_frame>
            <second_frame>  T  P  L  *  P  S  H  Y  P  Y  E  L  G  K  Y  L  E  D  S  R  D  L  S  T  L  I  V  I  S  G  S  F  L  C  N  G  G  K  C  S  V  F  T  S  V  T  G  S  I  A  G  V  S  I  F  D  Y  R  R  I  R  D  F  P  V  E  D  G  V  S  V  L  A  *  E  S  R  D  F  S  E  S  S  E  G  E  S  S  *  V  C  C  E  I  D  *  D  G  S  V  D  E  G  R  W  R  *  *  *  *  *  R  *  *  G  S  G  R  *  *  *  G  C  N  S  W  R  L  C  *  F  A  E  E  C  F  C  L  R  W  R  F  V  V  P  W  N  P  *  T  C  L  *   : G  S  G  G  K  D  V  W  D  G  S  K  K  E  N  K  Q  K  A  L  A  E  V  Q   </second_frame>
            <third_frame>   H  H  Y  N  P  H  I  I  H  M  N  W  G  N  I  *  K  I  L  E  I  S  Q  L  L  S  *  S  P  A  A  F  S  A  M  A  A  N  A  L  Y  L  L  Q  L  P  V  R  S  P  E  F  R  F  L  I  T  G  G  Y  A  I  F  R  S  K  M  E  F  P  F  S  R  K  N  H  A  I  S  L  R  A  R  K  V  R  V  V  E  C  V  A  K  S  T  E  M  E  A  L  M  K  D  G  G  D  D  D  N  D  E  G  D  E  V  R  G  D  D  D  K  V  V  T  H  G  D  S  V  S  S  Q  R  S  A  S  A  S  G  G  D  S  L  S  L  G  I  R  E  P  V  Y  E  :  V  V  E  V  K  T  C  G  T  V  A  K  R  K  I  N  R  R  H  L  L  K  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40554" stop="40177"/>
                    <exon start="39052" stop="38981"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPAAFSAMAANALYLLQLPVRSPEFRFLITGGYAIFRSKMEFPFSRKNHAISLRARKVRVVECVAKSTEMEALMKDGGDDDNDEGDEVRGDDDKVVTHGDSVSSQRSASASGGDSLSLGIREPVYEVVEVKTCGTVAKRKINRRHLLKSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="45934" PGL_stop="46717"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45934" e_stop="46717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45934" e_stop="46717" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45934" stop="46717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316661" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATAAGAGTACCTTAGAGCCAACCAAAAATTCAAAAAACATCTAAAAATTTGCCCAACATATTAAATACTAACTTGTCTTCCAAAAATGGCAGCAGCAACAACAAACCATGTTGAACAACAACACGACGTCGTTGTAGTTGTAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCATCGAACTCTCCCACCGCATCTCCTCCGCCAACATCCCTGTTTACTACGTCAGCACCGCCGCTCACGTCCGTCAAGCTCAGTCGCGTGCTGTCGGCTGGGATCCACTGAACACCACAAATCTCAATTTCATTGATTTTCCGGTAACATTCGAGGTACCTCCTCCTAATCCAGATGCATCCATCAAATTCCCTTCTCAACTTGTTCCTGCTTTCAATTCTTCATTGCAACTCCGTGAACCAGTTACAGATCTGGTAAATAAATTGGCTTCAACATCGAGAAGAGTTGTTGTGATTCATGATTTTCTCACTTCATGGGTTGTTCAAGATGTACCAAAAATACCCAATGCAGAGTGTTACTGTTTACACACTGTTTCTGCTTTTCTTGTGTTTTCTTATATCTGGGATGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGCTGTACTTAAACAACTTCCGTCTCTCGATGGTTGTAATTCTCCTGAACTCGAAGAATTTGCTAAGAAGCAAATAGCTGCAAGAGTTCCTGGCGTTGGAAATATTTTCAGTACATCTCGAGTTATCGAAGGATTGTATATTGATCTAATGGATAGAATGATGGGAG</gDNA_template>
            <first_frame> K  *  E  Y  L  R  A  N  Q  K  F  K  K  H  L  K  I  C  P  T  Y  *  I  L  T  C  L  P  K  M  A  A  A  T  T  N  H  V  E  Q  Q  H  D  V  V  V  V  V  V  P  L  P  A  Q  G  H  L  H  A  A  I  E  L  S  H  R  I  S  S  A  N  I  P  V  Y  Y  V  S  T  A  A  H  V  R  Q  A  Q  S  R  A  V  G  W  D  P  L  N  T  T  N  L  N  F  I  D  F  P  V  T  F  E  V  P  P  P  N  P  D  A  S  I  K  F  P  S  Q  L  V  P  A  F  N  S  S  L  Q  L  R  E  P  V  T  D  L  V  N  K  L  A  S  T  S  R  R  V  V  V  I  H  D  F  L  T  S  W  V  V  Q  D  V  P  K  I  P  N  A  E  C  Y  C  L  H  T  V  S  A  F  L  V  F  S  Y  I  W  D  A  A  R  P  P  V  P  P  E  A  E  A  V  L  K  Q  L  P  S  L  D  G  C  N  S  P  E  L  E  E  F  A  K  K  Q  I  A  A  R  V  P  G  V  G  N  I  F  S  T  S  R  V  I  E  G  L  Y  I  D  L  M  D  R  M  M  G  </first_frame>
            <second_frame>  N  K  S  T  L  E  P  T  K  N  S  K  N  I  *  K  F  A  Q  H  I  K  Y  *  L  V  F  Q  K  W  Q  Q  Q  Q  Q  T  M  L  N  N  N  T  T  S  L  *  L  *  F  L  F  L  H  K  A  I  S  T  Q  P  S  N  S  P  T  A  S  P  P  P  T  S  L  F  T  T  S  A  P  P  L  T  S  V  K  L  S  R  V  L  S  A  G  I  H  *  T  P  Q  I  S  I  S  L  I  F  R  *  H  S  R  Y  L  L  L  I  Q  M  H  P  S  N  S  L  L  N  L  F  L  L  S  I  L  H  C  N  S  V  N  Q  L  Q  I  W  *  I  N  W  L  Q  H  R  E  E  L  L  *  F  M  I  F  S  L  H  G  L  F  K  M  Y  Q  K  Y  P  M  Q  S  V  T  V  Y  T  L  F  L  L  F  L  C  F  L  I  S  G  M  L  L  D  H  L  Y  L  L  K  L  K  L  Y  L  N  N  F  R  L  S  M  V  V  I  L  L  N  S  K  N  L  L  R  S  K  *  L  Q  E  F  L  A  L  E  I  F  S  V  H  L  E  L  S  K  D  C  I  L  I  *  W  I  E  *  W  E </second_frame>
            <third_frame>   I  R  V  P  *  S  Q  P  K  I  Q  K  T  S  K  N  L  P  N  I  L  N  T  N  L  S  S  K  N  G  S  S  N  N  K  P  C  *  T  T  T  R  R  R  C  S  C  S  S  S  S  C  T  R  P  S  P  R  S  H  R  T  L  P  P  H  L  L  R  Q  H  P  C  L  L  R  Q  H  R  R  S  R  P  S  S  S  V  A  C  C  R  L  G  S  T  E  H  H  K  S  Q  F  H  *  F  S  G  N  I  R  G  T  S  S  *  S  R  C  I  H  Q  I  P  F  S  T  C  S  C  F  Q  F  F  I  A  T  P  *  T  S  Y  R  S  G  K  *  I  G  F  N  I  E  K  S  C  C  D  S  *  F  S  H  F  M  G  C  S  R  C  T  K  N  T  Q  C  R  V  L  L  F  T  H  C  F  C  F  S  C  V  F  L  Y  L  G  C  C  *  T  T  C  T  S  *  S  *  S  C  T  *  T  T  S  V  S  R  W  L  *  F  S  *  T  R  R  I  C  *  E  A  N  S  C  K  S  S  W  R  W  K  Y  F  Q  Y  I  S  S  Y  R  R  I  V  Y  *  S  N  G  *  N  D  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46000" stop="46716"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILTCLPKMAAATTNHVEQQHDVVVVVVPLPAQGHLHAAIELSHRISSANIPVYYVSTAAHVRQAQSRAVGWDPLNTTNLNFIDFPVTFEVPPPNPDASIKFPSQLVPAFNSSLQLREPVTDLVNKLASTSRRVVVIHDFLTSWVVQDVPKIPNAECYCLHTVSAFLVFSYIWDAARPPVPPEAEAVLKQLPSLDGCNSPELEEFAKKQIAARVPGVGNIFSTSRVIEGLYIDLMDRMMG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="50505" PGL_stop="51878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50505" e_stop="51878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50505" e_stop="51878" e_length="1374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50505" stop="51878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316662" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTTTGCCCAAACATTTCTTACTCATCCCTCCCAAAAAATGGCATCAACAACAAACCATGTAAATCAACAACACGACGTTGTTGTAGTTATAGTTCCTCTTCCTGCACAAGGCCATCTCCACGCAGCCCTCGAACTCTCCCGCCGCCTCTCCTCCGCCAACATCCCCGTTTACTACGTCAGCACCACCGCTCACGTCCGGCAAGCTCACTCCCGTGCTGCCGGATGGGACCCATTAAACACCCCAAATCTCAATTTCATTGATTTTCCTGTTACATTCAATGCCCCTCCTACGAACCCAGATGCATCCATCAAGTTCCCTTCACAACTAGTCCCTGCTTTCAACTCTTCAATGCAACTACGTACCCCAATTACAGATCTAGTAAATAAATTGGGTTCAATATCGAGGAGAGTGATAGTTATTCATGATTTTCTCACGTCTTGGGTGGTTCAAGATGTACCCAAAATATCCAATACAGAGTGTTACTGTTTACACACTGTTTCTGCTTATCTTATGTTTACATATACTTGGGAGGCTGCTAGACCACCTGTACCTCCTGAAGCTGAAGTTGTACTCAAACAACTTCCGTCTCAAGATGGGTGTACTTCTCCTGAAGTCATTGAATTTGCTATGAAGCAAATAAATGTACTTCAGGATGCTGGAAATATTTACAGTACGTCTCGAGCAATCGATGGAATGTACCTTGATTTGACAGAGAAAATGAGTGTTCCTAAGGATTTTAAGAACTGGGCTCTTGGTCCATTCAATCCTGTAGATCTGAATATTGATAAGAAGGATCGTCATTATTCAGTTGAGTGGTTAGATAAACAACCAGCTAGCTCGGTGATTTTCGTGTCCTTTGGATCAACGACTTCGTTAACCGAGGATGAAATCAGAGAGCTAGCTATTGGGCTGGAAGCAAGTCAACAGAGATTTATCTGGGTCCTGAGGGACGCAGATAAAGGAGATATATTCTCCGGTGAAGTTCGAAAATATCAATTGCCTGAAGGATATGAGAAGAGGGTATCGGAAAGAGGACTTGTAATGAGAGATTGGGCACCACAATTGGAAATTCTAGGACACCCGTCTACGGGTGGGTTCATGAGTCATTGTGGGTGGAATTCTTGTATAGAGAGTATTTCAATGGGAGTGCCAATAGCGGCCTGGCCAATGCATTCTGATCAACCTAGAAATGCTTTGTTCATAACTGAAGGACTGAAAATTGGTATATCAGTGAGAGAATGGGAGCGAAGAAAGGAAGTGGTGCCTGCAGAAACTGTTGAAAAAGTTGTGAGAACGTTAATGGCGTCTCCGGAGGGAGAGGAGATGAAACGGAAAGCTATGGAGCTCAAGGAAGCAGTGAAGTTGGCAG</gDNA_template>
            <first_frame> K  I  L  P  K  H  F  L  L  I  P  P  K  K  W  H  Q  Q  Q  T  M  *  I  N  N  T  T  L  L  *  L  *  F  L  F  L  H  K  A  I  S  T  Q  P  S  N  S  P  A  A  S  P  P  P  T  S  P  F  T  T  S  A  P  P  L  T  S  G  K  L  T  P  V  L  P  D  G  T  H  *  T  P  Q  I  S  I  S  L  I  F  L  L  H  S  M  P  L  L  R  T  Q  M  H  P  S  S  S  L  H  N  *  S  L  L  S  T  L  Q  C  N  Y  V  P  Q  L  Q  I  *  *  I  N  W  V  Q  Y  R  G  E  *  *  L  F  M  I  F  S  R  L  G  W  F  K  M  Y  P  K  Y  P  I  Q  S  V  T  V  Y  T  L  F  L  L  I  L  C  L  H  I  L  G  R  L  L  D  H  L  Y  L  L  K  L  K  L  Y  S  N  N  F  R  L  K  M  G  V  L  L  L  K  S  L  N  L  L  *  S  K  *  M  Y  F  R  M  L  E  I  F  T  V  R  L  E  Q  S  M  E  C  T  L  I  *  Q  R  K  *  V  F  L  R  I  L  R  T  G  L  L  V  H  S  I  L  *  I  *  I  L  I  R  R  I  V  I  I  Q  L  S  G  *  I  N  N  Q  L  A  R  *  F  S  C  P  L  D  Q  R  L  R  *  P  R  M  K  S  E  S  *  L  L  G  W  K  Q  V  N  R  D  L  S  G  S  *  G  T  Q  I  K  E  I  Y  S  P  V  K  F  E  N  I  N  C  L  K  D  M  R  R  G  Y  R  K  E  D  L  *  *  E  I  G  H  H  N  W  K  F  *  D  T  R  L  R  V  G  S  *  V  I  V  G  G  I  L  V  *  R  V  F  Q  W  E  C  Q  *  R  P  G  Q  C  I  L  I  N  L  E  M  L  C  S  *  L  K  D  *  K  L  V  Y  Q  *  E  N  G  S  E  E  R  K  W  C  L  Q  K  L  L  K  K  L  *  E  R  *  W  R  L  R  R  E  R  R  *  N  G  K  L  W  S  S  R  K  Q  *  S  W  Q </first_frame>
            <second_frame>  K  F  C  P  N  I  S  Y  S  S  L  P  K  N  G  I  N  N  K  P  C  K  S  T  T  R  R  C  C  S  Y  S  S  S  S  C  T  R  P  S  P  R  S  P  R  T  L  P  P  P  L  L  R  Q  H  P  R  L  L  R  Q  H  H  R  S  R  P  A  S  S  L  P  C  C  R  M  G  P  I  K  H  P  K  S  Q  F  H  *  F  S  C  Y  I  Q  C  P  S  Y  E  P  R  C  I  H  Q  V  P  F  T  T  S  P  C  F  Q  L  F  N  A  T  T  Y  P  N  Y  R  S  S  K  *  I  G  F  N  I  E  E  S  D  S  Y  S  *  F  S  H  V  L  G  G  S  R  C  T  Q  N  I  Q  Y  R  V  L  L  F  T  H  C  F  C  L  S  Y  V  Y  I  Y  L  G  G  C  *  T  T  C  T  S  *  S  *  S  C  T  Q  T  T  S  V  S  R  W  V  Y  F  S  *  S  H  *  I  C  Y  E  A  N  K  C  T  S  G  C  W  K  Y  L  Q  Y  V  S  S  N  R  W  N  V  P  *  F  D  R  E  N  E  C  S  *  G  F  *  E  L  G  S  W  S  I  Q  S  C  R  S  E  Y  *  *  E  G  S  S  L  F  S  *  V  V  R  *  T  T  S  *  L  G  D  F  R  V  L  W  I  N  D  F  V  N  R  G  *  N  Q  R  A  S  Y  W  A  G  S  K  S  T  E  I  Y  L  G  P  E  G  R  R  *  R  R  Y  I  L  R  *  S  S  K  I  S  I  A  *  R  I  *  E  E  G  I  G  K  R  T  C  N  E  R  L  G  T  T  I  G  N  S  R  T  P  V  Y  G  W  V  H  E  S  L  W  V  E  F  L  Y  R  E  Y  F  N  G  S  A  N  S  G  L  A  N  A  F  *  S  T  *  K  C  F  V  H  N  *  R  T  E  N  W  Y  I  S  E  R  M  G  A  K  K  G  S  G  A  C  R  N  C  *  K  S  C  E  N  V  N  G  V  S  G  G  R  G  D  E  T  E  S  Y  G  A  Q  G  S  S  E  V  G   </second_frame>
            <third_frame>   N  F  A  Q  T  F  L  T  H  P  S  Q  K  M  A  S  T  T  N  H  V  N  Q  Q  H  D  V  V  V  V  I  V  P  L  P  A  Q  G  H  L  H  A  A  L  E  L  S  R  R  L  S  S  A  N  I  P  V  Y  Y  V  S  T  T  A  H  V  R  Q  A  H  S  R  A  A  G  W  D  P  L  N  T  P  N  L  N  F  I  D  F  P  V  T  F  N  A  P  P  T  N  P  D  A  S  I  K  F  P  S  Q  L  V  P  A  F  N  S  S  M  Q  L  R  T  P  I  T  D  L  V  N  K  L  G  S  I  S  R  R  V  I  V  I  H  D  F  L  T  S  W  V  V  Q  D  V  P  K  I  S  N  T  E  C  Y  C  L  H  T  V  S  A  Y  L  M  F  T  Y  T  W  E  A  A  R  P  P  V  P  P  E  A  E  V  V  L  K  Q  L  P  S  Q  D  G  C  T  S  P  E  V  I  E  F  A  M  K  Q  I  N  V  L  Q  D  A  G  N  I  Y  S  T  S  R  A  I  D  G  M  Y  L  D  L  T  E  K  M  S  V  P  K  D  F  K  N  W  A  L  G  P  F  N  P  V  D  L  N  I  D  K  K  D  R  H  Y  S  V  E  W  L  D  K  Q  P  A  S  S  V  I  F  V  S  F  G  S  T  T  S  L  T  E  D  E  I  R  E  L  A  I  G  L  E  A  S  Q  Q  R  F  I  W  V  L  R  D  A  D  K  G  D  I  F  S  G  E  V  R  K  Y  Q  L  P  E  G  Y  E  K  R  V  S  E  R  G  L  V  M  R  D  W  A  P  Q  L  E  I  L  G  H  P  S  T  G  G  F  M  S  H  C  G  W  N  S  C  I  E  S  I  S  M  G  V  P  I  A  A  W  P  M  H  S  D  Q  P  R  N  A  L  F  I  T  E  G  L  K  I  G  I  S  V  R  E  W  E  R  R  K  E  V  V  P  A  E  T  V  E  K  V  V  R  T  L  M  A  S  P  E  G  E  E  M  K  R  K  A  M  E  L  K  E  A  V  K  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50507" stop="51877"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1371</number_coding_nucleotides>
                  <number_encoded_amino_acids>457</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFAQTFLTHPSQKMASTTNHVNQQHDVVVVIVPLPAQGHLHAALELSRRLSSANIPVYYVSTTAHVRQAHSRAAGWDPLNTPNLNFIDFPVTFNAPPTNPDASIKFPSQLVPAFNSSMQLRTPITDLVNKLGSISRRVIVIHDFLTSWVVQDVPKISNTECYCLHTVSAYLMFTYTWEAARPPVPPEAEVVLKQLPSQDGCTSPEVIEFAMKQINVLQDAGNIYSTSRAIDGMYLDLTEKMSVPKDFKNWALGPFNPVDLNIDKKDRHYSVEWLDKQPASSVIFVSFGSTTSLTEDEIRELAIGLEASQQRFIWVLRDADKGDIFSGEVRKYQLPEGYEKRVSERGLVMRDWAPQLEILGHPSTGGFMSHCGWNSCIESISMGVPIAAWPMHSDQPRNALFITEGLKIGISVREWERRKEVVPAETVEKVVRTLMASPEGEEMKRKAMELKEAVKLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="71791" PGL_stop="71351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71791" e_stop="71351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="71791" e_stop="71351" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71791" stop="71351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342676" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCATACGTCTACAAGTTGTCATCTTCGGATAGATGCAAGAGCATTCCTCTTCAAATCGACAGCTCTGCGTATGGAAGTGACAACGGGTGTTTGAAGGGTGGAGTACACTTTGTTGATGGCGACGAGAGTGTACCGGTCGTGAGCGCCGGCTTCATGTGCGCGAAAGGTTGGCGAGGCAAAACGCGTTTCAACCCCTCGGGCATCTCAACATACATAAGGGAACACCAGCACAAGGCTCCGTCGAGTCTGCTAGAAGGGAGAGGCACGGAGAGTGGTGCTCATGTTGACATCATGGGAAATGTCGCCTTCATCGAGGATGTCCTTCGACTCGCTGGTGGTGCCACCGGTGCAGAGTTGGGTGGCGATAGAATCTACTCGGATATTATGAAAATGTCAGAGAGGATAAATATTCGTCTTTAACGTGTGATAATACGCGCGA</gDNA_template>
            <first_frame> D  H  T  S  T  S  C  H  L  R  I  D  A  R  A  F  L  F  K  S  T  A  L  R  M  E  V  T  T  G  V  *  R  V  E  Y  T  L  L  M  A  T  R  V  Y  R  S  *  A  P  A  S  C  A  R  K  V  G  E  A  K  R  V  S  T  P  R  A  S  Q  H  T  *  G  N  T  S  T  R  L  R  R  V  C  *  K  G  E  A  R  R  V  V  L  M  L  T  S  W  E  M  S  P  S  S  R  M  S  F  D  S  L  V  V  P  P  V  Q  S  W  V  A  I  E  S  T  R  I  L  *  K  C  Q  R  G  *  I  F  V  F  N  V  *  *  Y  A  R </first_frame>
            <second_frame>  I  I  R  L  Q  V  V  I  F  G  *  M  Q  E  H  S  S  S  N  R  Q  L  C  V  W  K  *  Q  R  V  F  E  G  W  S  T  L  C  *  W  R  R  E  C  T  G  R  E  R  R  L  H  V  R  E  R  L  A  R  Q  N  A  F  Q  P  L  G  H  L  N  I  H  K  G  T  P  A  Q  G  S  V  E  S  A  R  R  E  R  H  G  E  W  C  S  C  *  H  H  G  K  C  R  L  H  R  G  C  P  S  T  R  W  W  C  H  R  C  R  V  G  W  R  *  N  L  L  G  Y  Y  E  N  V  R  E  D  K  Y  S  S  L  T  C  D  N  T  R   </second_frame>
            <third_frame>   S  Y  V  Y  K  L  S  S  S  D  R  C  K  S  I  P  L  Q  I  D  S  S  A  Y  G  S  D  N  G  C  L  K  G  G  V  H  F  V  D  G  D  E  S  V  P  V  V  S  A  G  F  M  C  A  K  G  W  R  G  K  T  R  F  N  P  S  G  I  S  T  Y  I  R  E  H  Q  H  K  A  P  S  S  L  L  E  G  R  G  T  E  S  G  A  H  V  D  I  M  G  N  V  A  F  I  E  D  V  L  R  L  A  G  G  A  T  G  A  E  L  G  G  D  R  I  Y  S  D  I  M  K  M  S  E  R  I  N  I  R  L  *  R  V  I  I  R  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71789" stop="71370"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYVYKLSSSDRCKSIPLQIDSSAYGSDNGCLKGGVHFVDGDESVPVVSAGFMCAKGWRGKTRFNPSGISTYIREHQHKAPSSLLEGRGTESGAHVDIMGNVAFIEDVLRLAGGATGAELGGDRIYSDIMKMSERINIRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="107559" PGL_stop="95225"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107559" e_stop="107170"/>
            <exon e_start="95339" e_stop="95225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.928"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="107559" e_stop="107170" e_length="390"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107169" i_stop="95340" i_length="11830"/>
          </intron>
          <exon e_serial="2" e_score="0.904">
            <gDNA_exon_boundary e_start="95339" e_stop="95225" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107559" stop="107170"/>
              <exon start="95339" stop="95225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTTGTGACGGAATGGCAGGACGGACCGTCACAGGTGTGACGGACCGTCACAGACCCTTGGTGGAAATATTGGGTCTCTGAACCTTGCGACGACCTGCAGGACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCATATCCCAGGTAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTGGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGTCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGG : GTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCCCATGACGATCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAG</gDNA_template>
            <first_frame> K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  L  *  R  N  G  R  T  D  R  H  R  C  D  G  P  S  Q  T  L  G  G  N  I  G  S  L  N  L  A  T  T  C  R  T  D  R  R  R  H  D  G  P  S  Q  V  A  H  I  P  G  R  I  G  F  P  Y  T  F  *  G  T  F  W  D  Y  S  F  L  N  Y  R  F  R  G  F  I  L  I  T  Q  I  L  G  G  *  K  R  *  P  *  V  N  *  W  G  I  I  V  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  :  V  L  K  R  D  P  S  T  V  R  R  A  H  D  D  P  S  W  V  P  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  </first_frame>
            <second_frame>  K  H  L  E  N  L  K  L  G  T  E  N  R  L  S  E  L  C  D  G  M  A  G  R  T  V  T  G  V  T  D  R  H  R  P  L  V  E  I  L  G  L  *  T  L  R  R  P  A  G  R  T  V  A  G  T  T  A  R  H  R  L  R  I  S  Q  V  E  S  D  F  L  T  R  F  K  G  R  F  G  T  I  L  S  L  I  I  D  F  V  G  L  Y  *  *  L  K  F  L  G  V  K  R  G  N  P  K  L  I  S  G  V  L  L  S  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G :   F  *  N  E  T  P  R  R  S  V  V  P  M  T  I  R  R  G  F  R  R  L  S  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q </second_frame>
            <third_frame>   N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  Q  V  *  R  T  V  T  D  P  W  W  K  Y  W  V  S  E  P  C  D  D  L  Q  D  G  P  S  Q  A  R  R  P  V  T  G  C  A  Y  P  R  *  N  R  I  S  L  H  V  L  R  D  V  L  G  L  F  F  P  *  L  *  I  S  W  V  Y  I  N  N  S  N  S  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  C  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E   : G  F  E  T  R  P  L  D  G  P  S  C  P  *  R  S  V  V  G  S  V  V  S  A  C  F  S  R  N  K  I  C  C  S  K  R  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0072I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96567" e_stop="96231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="96567" e_stop="96231" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96567" stop="96231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATGTACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGTACTATGTCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTTATTGTCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCCTTAATCTACGTGTCGGTTCGTGACACTCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  C  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  M  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  V  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  F  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  S  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  V  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  C  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  L  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  S  L  V  S  V  R  D  T  P  I  P  L  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  M  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  V  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  Y  C  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  *  S  T  C  R  F  V  T  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0072I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="106861" e_stop="106577"/>
            <exon e_start="106461" e_stop="106231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.951"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="106861" e_stop="106577" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106576" i_stop="106462" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="106461" e_stop="106231" e_length="231"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106861" stop="106577"/>
              <exon start="106461" stop="106231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATTGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCATGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAG : GATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGAAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCTCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAGCTATAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCCTAATACATACT</gDNA_template>
            <first_frame> P  N  L  L  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  G  L  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  :  D  S  I  L  R  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  I  *  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  A  I  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T </first_frame>
            <second_frame>  L  I  Y  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  M  D  W  V  S  R  S  D  T  R  I  E  Y  G  S  G  V  M  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  I  W  I  G  C  H  V  L  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R :   I  V  Y  *  G  A  E  C  H  V  P  T  R  G  K  *  R  *  *  I  L  K  Y  D  N  I  S  N  L  M  N  *  I  L  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </second_frame>
            <third_frame>   *  S  T  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  S  C  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  Y  G  S  G  V  T  F  *  H  Q  D  R  I  W  I  G  C  H  V  P  V  P   : G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  I  I  Y  P  I  *  *  T  K  F  S  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  S  Y  K  C  C  M  L  R  I  L  V  D  F  M  I  L  P  N  T  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0072I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="110308" PGL_stop="115333"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110308" e_stop="110720"/>
            <exon e_start="111951" e_stop="112043"/>
            <exon e_start="112181" e_stop="112288"/>
            <exon e_start="113814" e_stop="113928"/>
            <exon e_start="114012" e_stop="114145"/>
            <exon e_start="114243" e_stop="114344"/>
            <exon e_start="114428" e_stop="114520"/>
            <exon e_start="114630" e_stop="114765"/>
            <exon e_start="114852" e_stop="115333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.904" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.482" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110308" e_stop="110720" e_length="413"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="110721" i_stop="111950" i_length="1230"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111951" e_stop="112043" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.962">
            <gDNA_intron_boundary i_start="112044" i_stop="112180" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112181" e_stop="112288" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113814" e_stop="113928" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114012" e_stop="114145" e_length="134"/>
          </exon>
          <intron i_serial="5" don_prob="0.735" acc_prob="0.904">
            <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="114243" e_stop="114344" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.966" acc_prob="0.886">
            <gDNA_intron_boundary i_start="114345" i_stop="114427" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="114428" e_stop="114520" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.982">
            <gDNA_intron_boundary i_start="114521" i_stop="114629" i_length="109"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="114630" e_stop="114765" e_length="136"/>
          </exon>
          <intron i_serial="8" don_prob="0.482" acc_prob="0.980">
            <gDNA_intron_boundary i_start="114766" i_stop="114851" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="114852" e_stop="115333" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110308" stop="110720"/>
              <exon start="111951" stop="112043"/>
              <exon start="112181" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114344"/>
              <exon start="114428" stop="114520"/>
              <exon start="114630" stop="114765"/>
              <exon start="114852" stop="115333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTCTCCTCCCTCCTTTTTCTTGCTTTAAATACATTCACCGTCAAAAACCTTTACATACATATCGATTCACTTCAATATAGAGAGAGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTCATTTATGTGAGAAGCTTCTGTCGGAGACTCCTCATAAGGTGCTTGCTGTCGATGTTTACAGTGATAAGATTAAGCATTTGCTTGAACCGGCGACGGTTACTTGGGCTGATCGAATTCAGTTTCATCGAATCAATATTAAGAATGATTCTCGCCTTGAAGGTCTCATCAAAATGGCAGATCTG : ACCATAAATCTTGCTGCGATCTGCACACCTGCAGATTACAACACTCGTCCACTTGATACAATTTACAGCAATTTCATCGATGCTCTACCAGTG : GTCAAGTACTGCTCAGAAAATGGAAAGCGTCTCATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG : GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG : CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAAT : AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCATATATATCAAAGATGCTATTGAAGCTGTTCTTCTAATGATC : GAAAATCCTGCCAGAGCCAATGGCCATATCTTTAATGTTGGTAACCCTAACAATGAAGTTACTGTCAGGCAGCTGGCTGAAATGATGACTAAG : GTGTATGCTAAGGTGAGTGGAGAGTCTTCTATTGAAACACCCACCATTGATGTAAGTTCTAAAGAATTTTATGGTGAGGGGTATGATGACAGTGACAAGAGGATTCCGGACATGACCATAATCAACAGGCAGCTTG : GTTGGAACCCAAAGACTTCCTTATGGGACTTGCTAGAATCCACACTCACATACCAACACAGGACATACGCTGAGGCTGTCAAGCAGGCCATGTCTAAAACAACAGCAAATTGATTGTTCGCTGCTTGTTGGCAGGTCTTTCAATATCTTGTTACGATTCTCCTGAGTAAAAATCTACATAGTCCTTCACCTCATACACGTAATTTTACGTCCCTTCTGTAATGAATCATGTATTCTATTTTGTGACAGCATATTTATTAAGAAATTTGAAAACCTTTTTAACAATACAATGCTAAGGATACTAGATGGACAGGAATGCAGGTGTCATAGGCTGGGTGTATTATGTCACTAGTGCTTCAAAATAGTTATCGGGGTATTAGATAAAAGAAAAGCTGTCCTGTTCTTATAAGATCTGTTGTCGTCTATATATTTATTCCTATGTATGGAAACATCTTGTATCATTTTCATCGACCTGTTGATGGG</gDNA_template>
            <first_frame> A  L  L  P  P  F  S  C  F  K  Y  I  H  R  Q  K  P  L  H  T  Y  R  F  T  S  I  *  R  E  K  L  K  K  V  S  *  K  K  L  Q  *  E  R  I  C  S  N  W  K  W  Q  E  E  *  I  W  T  V  I  P  L  S  R  L  R  Y  A  *  L  V  P  V  D  S  L  V  L  I  Y  V  R  S  F  C  R  R  L  L  I  R  C  L  L  S  M  F  T  V  I  R  L  S  I  C  L  N  R  R  R  L  L  G  L  I  E  F  S  F  I  E  S  I  L  R  M  I  L  A  L  K  V  S  S  K  W  Q  I  * :   P  *  I  L  L  R  S  A  H  L  Q  I  T  T  L  V  H  L  I  Q  F  T  A  I  S  S  M  L  Y  Q  W :   S  S  T  A  Q  K  M  E  S  V  S  F  T  S  Q  L  V  K  F  M  G  K  P  *  V  P  F  Y  R  K  T  A  H  S  G  R :   I  L  L  I  M  C  L  R  K  T  P  P  L  A  S  L  D  Q  L  R  S  S  G  G  P  M  H  V  Q  N  S  *  L  R  G  W  S  M  :  L  R  V  R  R  M  A  *  S  S  L  L  *  G  H  L  T  G  L  V  L  G  W  I  L  F  P  A  L  M  V  L  V  K  V  F  Q  E  C  *  L  A  L  V  I :   T  F  *  D  V  S  L  *  N  L  W  M  G  E  N  L  K  G  P  S  Y  I  S  K  M  L  L  K  L  F  F  *  *  S :   K  I  L  P  E  P  M  A  I  S  L  M  L  V  T  L  T  M  K  L  L  S  G  S  W  L  K  *  *  L  R :   C  M  L  R  *  V  E  S  L  L  L  K  H  P  P  L  M  *  V  L  K  N  F  M  V  R  G  M  M  T  V  T  R  G  F  R  T  *  P  *  S  T  G  S  L  :  V  G  T  Q  R  L  P  Y  G  T  C  *  N  P  H  S  H  T  N  T  G  H  T  L  R  L  S  S  R  P  C  L  K  Q  Q  Q  I  D  C  S  L  L  V  G  R  S  F  N  I  L  L  R  F  S  *  V  K  I  Y  I  V  L  H  L  I  H  V  I  L  R  P  F  C  N  E  S  C  I  L  F  C  D  S  I  F  I  K  K  F  E  N  L  F  N  N  T  M  L  R  I  L  D  G  Q  E  C  R  C  H  R  L  G  V  L  C  H  *  C  F  K  I  V  I  G  V  L  D  K  R  K  A  V  L  F  L  *  D  L  L  S  S  I  Y  L  F  L  C  M  E  T  S  C  I  I  F  I  D  L  L  M   </first_frame>
            <second_frame>  L  S  S  L  L  F  L  A  L  N  T  F  T  V  K  N  L  Y  I  H  I  D  S  L  Q  Y  R  E  R  N  *  K  K  Y  L  K  K  N  C  S  E  R  G  F  A  V  I  G  N  G  R  K  S  R  S  G  R  *  S  H  *  A  D  Y  D  M  H  D  W  C  R  W  I  H  W  F  S  F  M  *  E  A  S  V  G  D  S  S  *  G  A  C  C  R  C  L  Q  *  *  D  *  A  F  A  *  T  G  D  G  Y  L  G  *  S  N  S  V  S  S  N  Q  Y  *  E  *  F  S  P  *  R  S  H  Q  N  G  R  S   : D  H  K  S  C  C  D  L  H  T  C  R  L  Q  H  S  S  T  *  Y  N  L  Q  Q  F  H  R  C  S  T  S   : G  Q  V  L  L  R  K  W  K  A  S  H  S  L  L  N  L  *  S  L  W  E  N  H  R  C  L  F  T  E  R  Q  P  T  P  A   : G  S  C  L  L  C  A  *  G  R  H  L  P  L  H  L  W  T  N  *  E  A  A  V  V  L  C  M  C  K  T  V  D  *  E  A  G  L  C :   *  G  C  G  E  W  L  R  V  H  Y  C  K  A  I  *  L  D  W  S  *  D  G  F  Y  S  R  H  *  W  S  *  *  R  C  S  K  S  V  S  L  L  *  *   : *  P  F  K  T  *  A  F  E  T  C  G  W  G  R  I  S  K  D  L  H  I  Y  Q  R  C  Y  *  S  C  S  S  N  D   : R  K  S  C  Q  S  Q  W  P  Y  L  *  C  W  *  P  *  Q  *  S  Y  C  Q  A  A  G  *  N  D  D  *   : G  V  C  *  G  E  W  R  V  F  Y  *  N  T  H  H  *  C  K  F  *  R  I  L  W  *  G  V  *  *  Q  *  Q  E  D  S  G  H  D  H  N  Q  Q  A  A  W :   L  E  P  K  D  F  L  M  G  L  A  R  I  H  T  H  I  P  T  Q  D  I  R  *  G  C  Q  A  G  H  V  *  N  N  S  K  L  I  V  R  C  L  L  A  G  L  S  I  S  C  Y  D  S  P  E  *  K  S  T  *  S  F  T  S  Y  T  *  F  Y  V  P  S  V  M  N  H  V  F  Y  F  V  T  A  Y  L  L  R  N  L  K  T  F  L  T  I  Q  C  *  G  Y  *  M  D  R  N  A  G  V  I  G  W  V  Y  Y  V  T  S  A  S  K  *  L  S  G  Y  *  I  K  E  K  L  S  C  S  Y  K  I  C  C  R  L  Y  I  Y  S  Y  V  W  K  H  L  V  S  F  S  S  T  C  *  W  </second_frame>
            <third_frame>   S  P  P  S  F  F  L  L  *  I  H  S  P  S  K  T  F  T  Y  I  S  I  H  F  N  I  E  R  E  T  E  K  S  I  L  K  K  I  A  V  R  E  D  L  Q  *  L  E  M  A  G  R  V  D  L  D  G  N  P  I  K  Q  I  T  I  C  M  I  G  A  G  G  F  I  G  S  H  L  C  E  K  L  L  S  E  T  P  H  K  V  L  A  V  D  V  Y  S  D  K  I  K  H  L  L  E  P  A  T  V  T  W  A  D  R  I  Q  F  H  R  I  N  I  K  N  D  S  R  L  E  G  L  I  K  M  A  D  L  :  T  I  N  L  A  A  I  C  T  P  A  D  Y  N  T  R  P  L  D  T  I  Y  S  N  F  I  D  A  L  P  V  :  V  K  Y  C  S  E  N  G  K  R  L  I  H  F  S  T  C  E  V  Y  G  K  T  I  G  A  F  L  P  K  D  S  P  L  R  Q  :  D  P  A  Y  Y  V  L  K  E  D  T  S  P  C  I  F  G  P  I  E  K  Q  R  W  S  Y  A  C  A  K  Q  L  I  E  R  L  V  Y   : A  E  G  A  E  N  G  L  E  F  T  I  V  R  P  F  N  W  I  G  P  R  M  D  F  I  P  G  I  D  G  P  S  E  G  V  P  R  V  L  A  C  F  S  N  :  N  L  L  R  R  E  P  L  K  L  V  D  G  G  E  S  Q  R  T  F  I  Y  I  K  D  A  I  E  A  V  L  L  M  I  :  E  N  P  A  R  A  N  G  H  I  F  N  V  G  N  P  N  N  E  V  T  V  R  Q  L  A  E  M  M  T  K  :  V  Y  A  K  V  S  G  E  S  S  I  E  T  P  T  I  D  V  S  S  K  E  F  Y  G  E  G  Y  D  D  S  D  K  R  I  P  D  M  T  I  I  N  R  Q  L   : G  W  N  P  K  T  S  L  W  D  L  L  E  S  T  L  T  Y  Q  H  R  T  Y  A  E  A  V  K  Q  A  M  S  K  T  T  A  N  *  L  F  A  A  C  W  Q  V  F  Q  Y  L  V  T  I  L  L  S  K  N  L  H  S  P  S  P  H  T  R  N  F  T  S  L  L  *  *  I  M  Y  S  I  L  *  Q  H  I  Y  *  E  I  *  K  P  F  *  Q  Y  N  A  K  D  T  R  W  T  G  M  Q  V  S  *  A  G  C  I  M  S  L  V  L  Q  N  S  Y  R  G  I  R  *  K  K  S  C  P  V  L  I  R  S  V  V  V  Y  I  F  I  P  M  Y  G  N  I  L  Y  H  F  H  R  P  V  D  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110448" stop="110720"/>
                    <exon start="111951" stop="112043"/>
                    <exon start="112181" stop="112288"/>
                    <exon start="113814" stop="113928"/>
                    <exon start="114012" stop="114145"/>
                    <exon start="114243" stop="114344"/>
                    <exon start="114428" stop="114520"/>
                    <exon start="114630" stop="114765"/>
                    <exon start="114852" stop="114964"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEMAGRVDLDGNPIKQITICMIGAGGFIGSHLCEKLLSETPHKVLAVDVYSDKIKHLLEPATVTWADRIQFHRINIKNDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENGKRLIHFSTCEVYGKTIGAFLPKDSPLRQDPAYYVLKEDTSPCIFGPIEKQRWSYACAKQLIERLVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGESQRTFIYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTKVYAKVSGESSIETPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAVKQAMSKTTAN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="110393" e_stop="110538"/>
            <exon e_start="112214" e_stop="112288"/>
            <exon e_start="113814" e_stop="113928"/>
            <exon e_start="114012" e_stop="114145"/>
            <exon e_start="114243" e_stop="114303"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-intron don_prob="1.000" acc_prob="0.951" e_score="0.987"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.735" acc_prob="0.904" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="110393" e_stop="110538" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110539" i_stop="112213" i_length="1675"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="112214" e_stop="112288" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="112289" i_stop="113813" i_length="1525"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113814" e_stop="113928" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113929" i_stop="114011" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="114012" e_stop="114145" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.735" acc_prob="0.904">
            <gDNA_intron_boundary i_start="114146" i_stop="114242" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="114243" e_stop="114303" e_length="61"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110393" stop="110538"/>
              <exon start="112214" stop="112288"/>
              <exon start="113814" stop="113928"/>
              <exon start="114012" stop="114145"/>
              <exon start="114243" stop="114303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339119" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAACTGAAAAAAGTATCTTAAAAAAAATTGCAGTGAGAGAGGATTTGCAGTAATTGGAAATGGCAGGAAGAGTAGATCTGGACGGTAATCCCATTAAGCAGATTACGATATGCATGATTGGTGCCGGTGGATTCATTGGTTCTC : ATTCACTTCTCAACTTGTGAAGTTTATGGGAAAACCATAGGTGCCTTTTTACCGAAAGACAGCCCACTCCGGCAG : GATCCTGCTTATTATGTGCTTAAGGAAGACACCTCCCCTTGCATCTTTGGACCAATTGAGAAGCAGCGGTGGTCCTATGCATGTGCAAAACAGTTGATTGAGAGGCTGGTCTATG : CTGAGGGTGCGGAGAATGGCTTAGAGTTCACTATTGTAAGGCCATTTAACTGGATTGGTCCTAGGATGGATTTTATTCCCGGCATTGATGGTCCTAGTGAAGGTGTTCCAAGAGTGTTAGCTTGCTTTAGTAAT : AACCTTTTAAGACGTGAGCCTTTGAAACTTGTGGATGGGGGAGAATCTCAAAGGACCTTCA</gDNA_template>
            <first_frame> R  N  *  K  K  Y  L  K  K  N  C  S  E  R  G  F  A  V  I  G  N  G  R  K  S  R  S  G  R  *  S  H  *  A  D  Y  D  M  H  D  W  C  R  W  I  H  W  F  S :   F  T  S  Q  L  V  K  F  M  G  K  P  *  V  P  F  Y  R  K  T  A  H  S  G  R :   I  L  L  I  M  C  L  R  K  T  P  P  L  A  S  L  D  Q  L  R  S  S  G  G  P  M  H  V  Q  N  S  *  L  R  G  W  S  M  :  L  R  V  R  R  M  A  *  S  S  L  L  *  G  H  L  T  G  L  V  L  G  W  I  L  F  P  A  L  M  V  L  V  K  V  F  Q  E  C  *  L  A  L  V  I :   T  F  *  D  V  S  L  *  N  L  W  M  G  E  N  L  K  G  P  S </first_frame>
            <second_frame>  E  T  E  K  S  I  L  K  K  I  A  V  R  E  D  L  Q  *  L  E  M  A  G  R  V  D  L  D  G  N  P  I  K  Q  I  T  I  C  M  I  G  A  G  G  F  I  G  S   : H  S  L  L  N  L  *  S  L  W  E  N  H  R  C  L  F  T  E  R  Q  P  T  P  A   : G  S  C  L  L  C  A  *  G  R  H  L  P  L  H  L  W  T  N  *  E  A  A  V  V  L  C  M  C  K  T  V  D  *  E  A  G  L  C :   *  G  C  G  E  W  L  R  V  H  Y  C  K  A  I  *  L  D  W  S  *  D  G  F  Y  S  R  H  *  W  S  *  *  R  C  S  K  S  V  S  L  L  *  *   : *  P  F  K  T  *  A  F  E  T  C  G  W  G  R  I  S  K  D  L   </second_frame>
            <third_frame>   K  L  K  K  V  S  *  K  K  L  Q  *  E  R  I  C  S  N  W  K  W  Q  E  E  *  I  W  T  V  I  P  L  S  R  L  R  Y  A  *  L  V  P  V  D  S  L  V  L  :  I  H  F  S  T  C  E  V  Y  G  K  T  I  G  A  F  L  P  K  D  S  P  L  R  Q  :  D  P  A  Y  Y  V  L  K  E  D  T  S  P  C  I  F  G  P  I  E  K  Q  R  W  S  Y  A  C  A  K  Q  L  I  E  R  L  V  Y   : A  E  G  A  E  N  G  L  E  F  T  I  V  R  P  F  N  W  I  G  P  R  M  D  F  I  P  G  I  D  G  P  S  E  G  V  P  R  V  L  A  C  F  S  N  :  N  L  L  R  R  E  P  L  K  L  V  D  G  G  E  S  Q  R  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110512" stop="110538"/>
                    <exon start="112214" stop="112288"/>
                    <exon start="113814" stop="113928"/>
                    <exon start="114012" stop="114145"/>
                    <exon start="114243" stop="114302"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVPVDSLVLIHFSTCEVYGKTIGAFLPKDSPLRQDPAYYVLKEDTSPCIFGPIEKQRWSYACAKQLIERLVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGESQRTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="120442" PGL_stop="120048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120442" e_stop="120048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="120442" e_stop="120048" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120442" stop="120048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAGTAAAACTGTTGGATCACAAGTGCAGGAACTTCAACTTATTCTCCATGATCTGATTGCTGAAGATATGGTAGTAAATGAAGCTTTTCAAGTGGCTGCAATGATCGAGAAGTTGCCTCCTTCGTGGAATGATTTCAAGAATTATCTAAAGCACAAGCGTAAAGAAATGAAGCTTGAAGATCTTGTGATTCGTCTCAAGATTGAGGAAGATAATAGAAATGCCGAAAAGAAGTCGCATAAGAGTTCAACAATCATTGGAGTTAATATTGTTGAAGAAGCTCCTACCAAAGACAAAAAGAGAAAGAAGTCCAACGGGCAGAAGTCAGAACAGGCCAAGAAAAAATTCAAAGGCAACTGTTATAATTGTGGCAAGGCTGGTCATAGATCTTCTGA</gDNA_template>
            <first_frame> D  S  K  T  V  G  S  Q  V  Q  E  L  Q  L  I  L  H  D  L  I  A  E  D  M  V  V  N  E  A  F  Q  V  A  A  M  I  E  K  L  P  P  S  W  N  D  F  K  N  Y  L  K  H  K  R  K  E  M  K  L  E  D  L  V  I  R  L  K  I  E  E  D  N  R  N  A  E  K  K  S  H  K  S  S  T  I  I  G  V  N  I  V  E  E  A  P  T  K  D  K  K  R  K  K  S  N  G  Q  K  S  E  Q  A  K  K  K  F  K  G  N  C  Y  N  C  G  K  A  G  H  R  S  S   </first_frame>
            <second_frame>  I  V  K  L  L  D  H  K  C  R  N  F  N  L  F  S  M  I  *  L  L  K  I  W  *  *  M  K  L  F  K  W  L  Q  *  S  R  S  C  L  L  R  G  M  I  S  R  I  I  *  S  T  S  V  K  K  *  S  L  K  I  L  *  F  V  S  R  L  R  K  I  I  E  M  P  K  R  S  R  I  R  V  Q  Q  S  L  E  L  I  L  L  K  K  L  L  P  K  T  K  R  E  R  S  P  T  G  R  S  Q  N  R  P  R  K  N  S  K  A  T  V  I  I  V  A  R  L  V  I  D  L  L  </second_frame>
            <third_frame>   *  *  N  C  W  I  T  S  A  G  T  S  T  Y  S  P  *  S  D  C  *  R  Y  G  S  K  *  S  F  S  S  G  C  N  D  R  E  V  A  S  F  V  E  *  F  Q  E  L  S  K  A  Q  A  *  R  N  E  A  *  R  S  C  D  S  S  Q  D  *  G  R  *  *  K  C  R  K  E  V  A  *  E  F  N  N  H  W  S  *  Y  C  *  R  S  S  Y  Q  R  Q  K  E  K  E  V  Q  R  A  E  V  R  T  G  Q  E  K  I  Q  R  Q  L  L  *  L  W  Q  G  W  S  *  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0072I13.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120442" stop="120050"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSKTVGSQVQELQLILHDLIAEDMVVNEAFQVAAMIEKLPPSWNDFKNYLKHKRKEMKLEDLVIRLKIEEDNRNAEKKSHKSSTIIGVNIVEEAPTKDKKRKKSNGQKSEQAKKKFKGNCYNCGKAGHRSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="124020" PGL_stop="123669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124020" e_stop="123669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="124020" e_stop="123669" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124020" stop="123669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATGATCTTGCAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCAAGGGGGATGGGATTGAAGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTCCCCTCCCTATGATGTGAGTGCATTATTTTCTGTAGTTTGTGAAGGTTGAGTTGATAAAAC</gDNA_template>
            <first_frame> N  G  K  S  R  P  I  R  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  D  Y  V  K  S  C  D  D  L  A  D  P  L  T  K  A  L  T  R  E  K  V  W  S  T  S  R  G  M  G  L  K  P  T  N  S  *  V  I  Y  E  E  T  Q  P  G  D  *  R  S  Y  N  Q  V  Q  R  E  K  L  I  I  *  *  L  V  V  K  N  A  L  F  F  P  L  P  M  M  *  V  H  Y  F  L  *  F  V  K  V  E  L  I  K  </first_frame>
            <second_frame>  M  V  N  P  D  L  *  G  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  I  M  S  N  L  V  M  I  L  Q  I  L  L  Q  R  P  *  Q  E  K  R  F  G  A  H  Q  G  G  W  D  *  S  L  Q  I  L  E  S  Y  M  R  K  P  N  L  G  T  R  D  P  I  T  R  F  K  G  K  N  *  S  Y  D  D  L  L  *  K  M  H  Y  F  F  P  S  L  *  C  E  C  I  I  F  C  S  L  *  R  L  S  *  *  N </second_frame>
            <third_frame>   W  *  I  Q  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  L  C  Q  I  L  *  *  S  C  R  S  S  Y  K  G  L  N  K  R  K  G  L  E  H  I  K  G  D  G  I  E  A  Y  K  F  L  S  H  I  *  G  N  P  T  W  G  L  E  I  L  *  P  G  S  K  G  K  T  N  H  M  M  T  C  C  E  K  C  T  I  F  S  P  P  Y  D  V  S  A  L  F  S  V  V  C  E  G  *  V  D  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0072I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 61 chains have been computed
$ 
$ memory statistics:
$ 35792 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 1988 bytes was the average size of a spliced alignment
$ 21144 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1626 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 78 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 06:09:54
-->
