<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 23:43:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365226" ref_strand="+" ref_description="SGN-E365226 [cLPT-16-A17]">
      <seq>ttcttaagtaatatgaggcatcctcatatgctatcgatgatcggatattgctctgagctaaggtgcatcgtgttcgagtatatgcacaatggttgcttaagagacattctcttctcaggcaccagaggctctaaaaggagaaataagggcctaaactggcaagcaaggatatgtattgtagccaatgtttgtacaggcttgtgcttcctccatcgtgccaagccacggcccgtggctcatggcaacctgaacccttcaaaaatccttcttgatcataacaatatggcgaaaatccatggtgttaggacacctctgtcatgtgacaaatcggatatgagatcagatatccgggcttatggtaacttagtcttacagattctgactggaagaaactgggcggggttggttgaggaggcgattatgatggaccagagtaagcttattgaagtgcttgatcggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="1" stop="1053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="293" g_stop="753" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E365226" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="293" e_stop="753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAAGTAATATGAGGCATCCTCATATGCTATCGATGATCGGATATTGCTCTGAGCTAAGGTGCATCGTGTTCGAGTATATGCACAATGGTTGCTTAAGAGACATTCTCTTCTCAGGCACCAGAGGCTCTAAAAGGAGGAATAAGGGCCTAAACTGGCAAGCTAGGATATGTATTGTAGCCAATGTCTGTACTGGCTTGTGCTTCCTCCATCATGCCAAGCCAACGCCCGTGGCTCATGGCAACCTGAACCCTTCAAAAATCCTTCTTGATCATAACTATATGGCGAAAATCCATGGTGTTAGGACACCTCTGTCATGTGACAGATCGAATATGAGATCAGATATCCGGGCTTATGGGAACTTAGTCTTACAGATTCTGACTGGAAGAAACTGGGCGGGGTTGGTTGAGGAGGCGATTATGATGGACCAGAGTAAGCTTATTGAAGTGCTTGATCCGAT</genome_strand>
        <mrna_strand>TTCTTAAGTAATATGAGGCATCCTCATATGCTATCGATGATCGGATATTGCTCTGAGCTAAGGTGCATCGTGTTCGAGTATATGCACAATGGTTGCTTAAGAGACATTCTCTTCTCAGGCACCAGAGGCTCTAAAAGGAGAAATAAGGGCCTAAACTGGCAAGCAAGGATATGTATTGTAGCCAATGTTTGTACAGGCTTGTGCTTCCTCCATCGTGCCAAGCCACGGCCCGTGGCTCATGGCAACCTGAACCCTTCAAAAATCCTTCTTGATCATAACAATATGGCGAAAATCCATGGTGTTAGGACACCTCTGTCATGTGACAAATCGGATATGAGATCAGATATCCGGGCTTATGGTAACTTAGTCTTACAGATTCTGACTGGAAGAAACTGGGCGGGGTTGGTTGAGGAGGCGATTATGATGGACCAGAGTAAGCTTATTGAAGTGCTTGATCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622293" ref_strand="+" ref_description="SGN-E622293 [72658]">
      <seq>ttagataactaattttaaaataagttatctcgtaattttaccgagcctttgtacctttcctaattctcgtttttaaatcacaagttcctaacactactccaaatttcccaatcaaaatgtgttacggcggtcaacgattaccgtcaaaagacgacttaactgacccgacccgccggacccgaactttaccggcggcgaacgagaacgtcgtggtagttgaaaatctccgggaccggttagctgagacagaggcgcggttggagcgagctagggctcgggaagcggagctgagccggcagctggaggagatgaagaggtacgtctgcgttatggaaattctggaatgttacctcaagcgccgatacaaagaacagcaagtcagaaccctagcagtggtaaattcgaagtaaagatgatttatgtggttaaaatggatttttagggtttcatgctttatgtaatcatgtgtgttgtaattgtatattcttcagtgtgatatagaattggtaatcaattgaagttgaaatactcttcaattttattgttctatgtgttaagcttgatgttaatctggattataagtttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="16489" stop="15298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16189" g_stop="15593" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E622293" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16189" e_stop="15593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATTA-TAATTTTAAAATAAATTATTCCGTAATTTTATCCGAACCCTTGCACCTTTCCTGATTCTCGTTTTT-AATCACAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAAATACTCTTCAATTTTATTGTTCTACGTGTTAAGCTTGATGTTAATCTGGATTAGAAATTTCAAATAGTGGA</genome_strand>
        <mrna_strand>TTAGATAACTAATTTTAAAATAAGTTATCTCGTAATTTTA-CCGAGCCTTTGTACCTTTCCTAATTCTCGTTTTTAAATCACAAGTTCCTAACACTACTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACTGACCCGACCCGCCGGACCCGAACTTTACCGGCGGCGAACGAGAACGTCGTGGTAGTTGAAAATCTCCGGGACCGGTTAGCTGAGACAGAGGCGCGGTTGGAGCGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAGGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAAAGAACAGCAAGTCAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGA--TTTATGTGGTTAAAATGGATTTTTAGGGTTTCATGCTTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGGTAATCAATTGAAGTTGAAATACTCTTCAATTTTATTGTTCTATGTGTTAAGCTTGATGTTAATCTGGATTATAAGTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722959" ref_strand="+" ref_description="SGN-E722959 [FC18DE08]">
      <seq>aatcggccgaataaattattccgtaattttatccgaacccttgcacctttcctgattctcgtttttaatcacaagatcgtaacactattccaaatttcccaatcaaaatgtgttacggcggtcaacgattaccgtcaaaagacgacttaaccgacccgacccgacggacccgaactttaccggcggcgaacgagaacgcagtggtggttgaaaatcttcgggaccggttagctgagacggaggcgcggctggaacgagctagggctcgggaagcggagctgagccggcagctggaagagatgaagaggtacgtctgcgttatggaaattctggaatgttacctcaagcgccgatacagggaacagcaagttagaaccctagcagtggtaaattcgaagtaaagatgatttttatgtggttaaaatggattattagggtttcgtgatttatgtaatcatgtgtgttgtaattgtatattcttcagtgtgatatagaattgttaatctattgaacttgaaatactcttcaattttattgttctacgtgttaagcttgatgttaatctggattagaaatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="16472" stop="15298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16180" g_stop="15598" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="588" polyA_stop="638"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E722959" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16180" e_stop="15598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAT-TTTAAAATAAATTATTCCGTAATTTTATCCGAACCCTTGCACCTTTCCTGATTCTCGTTTTTAATCACAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAAATACTCTTCAATTTTATTGTTCTACGTGTTAAGCTTGATGTTAATCTGGATTAGAAATTTCAAATA</genome_strand>
        <mrna_strand>AATCGGCCGAATAAATTATTCCGTAATTTTATCCGAACCCTTGCACCTTTCCTGATTCTCGTTTTTAATCACAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAAATACTCTTCAATTTTATTGTTCTACGTGTTAAGCTTGATGTTAATCTGGATTAGAAATTTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568377" ref_strand="+" ref_description="SGN-E568377 [12650]">
      <seq>caacgattaccgtcaaaagacgacttaactgacccgacccgccggacccgaacgtgagcggcggcgaacgagaacgtcgtggtagttgaaaacctccgggaccggttagctgagacagaggcgcggttggagcgagctanggctcgggaagcggagctgagccggcagctggaggagatgaagaggtacgtctgcgttatggaaattctggaatgttacctcaagcgccgatacaaagaacagcaagtcagaaccctagcagtggtaaattcgaagtaaagatgatttatgtggttaaaatggatttttagggtttcatgctttatgtaatcatgtgtgttgtaattgtatattcttcagtgtgatatagaattggtaatcaattgaagttgaaatactcttcaattttattgttctatgtgttaagcttgatgttaatctggattataaatttcaagtaaaaaacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="16359" stop="15298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16059" g_stop="15598" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E568377" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16059" e_stop="15598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAAATACTCTTCAATTTTATTGTTCTACGTGTTAAGCTTGATGTTAATCTGGATTAGAAATTTCAAATA</genome_strand>
        <mrna_strand>CAACGATTACCGTCAAAAGACGACTTAACTGACCCGACCCGCCGGACCCGAACGTGAGCGGCGGCGAACGAGAACGTCGTGGTAGTTGAAAACCTCCGGGACCGGTTAGCTGAGACAGAGGCGCGGTTGGAGCGAGCTANGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAGGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAAAGAACAGCAAGTCAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGA--TTTATGTGGTTAAAATGGATTTTTAGGGTTTCATGCTTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGGTAATCAATTGAAGTTGAAATACTCTTCAATTTTATTGTTCTATGTGTTAAGCTTGATGTTAATCTGGATTATAAATTTCAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543145" ref_strand="+" ref_description="SGN-E543145 [TUS-64-M24](-)">
      <seq>caagatcgtaaccctattccaaatttcccaatcaaaatgtgttacggcggtcaacgattaccgtcaaaagacgacttaaccgacccgacccgacggacccgaactttaccggcggcgaacgagaacgcagtggtggttgaaaattttcgggaccggttagctgagacggaggcgcggctggaacgagctagggctcgggaagcggagctgagccggcagctggaagagatgaagaggtacgtttgcgttatggaaattttggaatgttacctcaagcgccgatacagggaacagcaagttagaaccctagcagtggtaaattcgaagtaaagatgatttttatgtggttaaaatggattattagggtttcgtgatttatgtaatcatgtgtgttgtaattgtatattcttcagtgtgatatagaattgttaatctattgaacttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="16410" stop="15361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16110" g_stop="15664" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="491"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E543145" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16110" e_stop="15664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAA</genome_strand>
        <mrna_strand>CAAGATCGTAACCCTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATTTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTTTGCGTTATGGAAATTTTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543146" ref_strand="+" ref_description="SGN-E543146 [TUS-64-M24]">
      <seq>caagatcgtaacactattccaaatttcccaatcaaaatgtgttacggcggtcaacgattaccgtcaaaagacgacttaaccgacccgacccgacggacccgaactttaccggcggcgaacgagaacgcagtggtggttgaaaatcttcgggaccggttagctgagacggaggcgcggctggaacgagctagggctcgggaagcggagctgagccggcagctggaagagatgaagaggtacgtctgcgttatggaaattctggaatgttacctcaagcgccgatacagggaacagcaagttagaaccctagcagtggtaaattcgaagtaaagatgatttttatgtggttaaaatggattattagggtttcgtgatttatgtaatcatgtgtgttgtaattgtatattcttcagtgtgatatagaattgttaatctattgaacttgnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="16410" stop="15361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16110" g_stop="15664" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="494"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E543146" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16110" e_stop="15664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAA</genome_strand>
        <mrna_strand>CAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301929" ref_strand="+" ref_description="SGN-E301929 [cLEX-3-A18]">
      <seq>aagatcgtaacactattccaaatttcccaatcaaaatgtgttacggcggtcaacgattaccgtcaaaagacgacttaaccgacccgacccgacggacccgaactttaccggcggcgaacgagaacgcagtggtggttgaaaatcttcgggaccggttagctgagacggaggcgcggctggaacgagctagggctcgggaagcggagctgagccggcagctggaagagatgaagaggtacgtctgcgttatggaaattctggaatgttacctcaagcgccgatacagggaacagcaagttagaaccctagcagtggtaaattcgaagtaaagatgatttttatgtggttaaaatggattattagggtttcgtgatttatgtaatcatgtgtgttgtaattgtatattcttcagtgtgatatagaattgttaatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="16409" stop="15374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16109" g_stop="15674" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E301929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16109" e_stop="15674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTAT</genome_strand>
        <mrna_strand>AAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720619" ref_strand="+" ref_description="SGN-E720619 [FC11BD01]">
      <seq>gggcgaattggcggccaatcggccgaattgacacacaaaaaaataccaaaaccccacttaatgtatacacaaactagttgtaaaagaagaactccaactatatccatgacaaactctacatcattcacattacaatgtgttcaaaccttattgatcatattcaattttattgctacaatatatcgagcatattctaacagtcaatattcgttcttagctttcatctttttcatatattttagtgcttacttggcaaataacttatcatctacatatcgaaacattcaatcgaaaaataagtcttttgaaaaaagcttgttgggatttgctatatggttcttgtattcttccattatttttgggtttgtttatcaattttatccattttttggattttgggctggtcttcctattcatattgtagccataattattagtggggttgtgttctatgactatgtcatttgtgataaacaagatggagataatagtcataattttaggtattttggtagtagcaatgatcaaatgaagaggggttattattgtgaagaaaaatgggaggtcatttgggaaaaagtttgagttactaaggaaatttcagtacatttcacggattcgagataggactgaatcactaagatttattgtacgtaattttatctacaaatatttgtgttattaggaagtaacaaggcgtgtttgtttgtacactagtaccaatctcaatgttatgtgttaaatttccccaaannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="22416" stop="23738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22716" g_stop="23439" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="754" r_length="724" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="756" polyA_stop="796"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E720619" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22716" e_stop="23439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACAAAAAAATAATAAAACCCCACTTAATGTATACACAAACTAGTTGTAAAAGAAGAACTCCAACTATATCCATGACAAACTCTACATCATTCACATTACAATGTGTTCAAACCTTATTGATCATATTCAATTTTATTGCTACAATATATCGAGCATATTCTAACAGTCAATATTCGTTCTTAGCTTTCATCTTTTTCATATATTTTAGTGCTTACTTGGCAAATAACTTATCATCTACATATCGAAACATTCAATCGAAAAATAAGTCTTTTGAGAAGAGCTTGTTGGGATTTGCTATATGGTTCTTGTATTCTTCCATTATTTTTGGGTTTGTTTATCAATTTTATCCATTTTTTGGATTTTGGGCTGGTCTTCCTATTCATATTGTAGCCATAATTATTAGTGGGGTTGTGTTCTATGACTATGTCATTTGTGATAAACAAGATGGAGATAATAGTCATAATTTTAGGTATTTTGGTAGTAGCAATGATCAAATGAAGAGGGGTTATTATTGTGAAGAAAAATGGGAGGTCATTTGGGAAAAAGTTTGAGTTACTAAGGAAATTTCAGTACATTTCACGGATTCGAGATAGGACTGAATCACTAAGATTTATTGTACGTAATTTTATCTACAAATATTTGTGTTATTAGGAAGTAACAAGGCGTGTTTGTTTGTACACTAGTACCAATCTCAATGTTATGTGTTAAATTTCCCCAAAA</genome_strand>
        <mrna_strand>ACACACAAAAAAATACCAAAACCCCACTTAATGTATACACAAACTAGTTGTAAAAGAAGAACTCCAACTATATCCATGACAAACTCTACATCATTCACATTACAATGTGTTCAAACCTTATTGATCATATTCAATTTTATTGCTACAATATATCGAGCATATTCTAACAGTCAATATTCGTTCTTAGCTTTCATCTTTTTCATATATTTTAGTGCTTACTTGGCAAATAACTTATCATCTACATATCGAAACATTCAATCGAAAAATAAGTCTTTTGAAAAAAGCTTGTTGGGATTTGCTATATGGTTCTTGTATTCTTCCATTATTTTTGGGTTTGTTTATCAATTTTATCCATTTTTTGGATTTTGGGCTGGTCTTCCTATTCATATTGTAGCCATAATTATTAGTGGGGTTGTGTTCTATGACTATGTCATTTGTGATAAACAAGATGGAGATAATAGTCATAATTTTAGGTATTTTGGTAGTAGCAATGATCAAATGAAGAGGGGTTATTATTGTGAAGAAAAATGGGAGGTCATTTGGGAAAAAGTTTGAGTTACTAAGGAAATTTCAGTACATTTCACGGATTCGAGATAGGACTGAATCACTAAGATTTATTGTACGTAATTTTATCTACAAATATTTGTGTTATTAGGAAGTAACAAGGCGTGTTTGTTTGTACACTAGTACCAATCTCAATGTTATGTGTTAAATTTCCCCAAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577948" ref_strand="+" ref_description="SGN-E577948 [LE08BH04]">
      <seq>tttttttttttttttttttggggaaatttaacacataacattgagattggtactagtgtacaaacaaacacgccttgttacttcctaataacacaaatatttgtagataaaattacgtacaataaatcttagtgattcagtcctatctcgaatccgtgaaatgtactgaaatttccttagtaactcaaactttttcccaaatgacctcccatttttcttcacaataataacccctcttcatttgatcattgctactaccaaaatacctaaaattatgactattatctccatcttgtttatcacaaatgacatagtcatagaacacaaccccactaataattatggctacaatatgaataggaagaccagcccaaaatccaaaaaatggataaaattgataaacaaacccaaaaataatggaagaatacaagaaccatatagcaaatcccaacaagctcttctcaaaagacttatttttcgattgaatgtttcgatatgtagatgataagttatttgccaagtaagcactaaaatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="96181" stop="22616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23454" g_stop="22916" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E577948" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23454" e_stop="22916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCAAACTGATTTTTGGGGAAATTTAACACATAACATTGAGATTGGTACTAGTGTACAAACAAACACGCCTTGTTACTTCCTAATAACACAAATATTTGTAGATAAAATTACGTACAATAAATCTTAGTGATTCAGTCCTATCTCGAATCCGTGAAATGTACTGAAATTTCCTTAGTAACTCAAACTTTTTCCCAAATGACCTCCCATTTTTCTTCACAATAATAACCCCTCTTCATTTGATCATTGCTACTACCAAAATACCTAAAATTATGACTATTATCTCCATCTTGTTTATCACAAATGACATAGTCATAGAACACAACCCCACTAATAATTATGGCTACAATATGAATAGGAAGACCAGCCCAAAATCCAAAAAATGGATAAAATTGATAAACAAACCCAAAAATAATGGAAGAATACAAGAACCATATAGCAAATCCCAACAAGCTCTTCTCAAAAGACTTATTTTTCGATTGAATGTTTCGATATGTAGATGATAAGTTATTTGCCAAGTAAGCACTAAAATATATG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTGGGGAAATTTAACACATAACATTGAGATTGGTACTAGTGTACAAACAAACACGCCTTGTTACTTCCTAATAACACAAATATTTGTAGATAAAATTACGTACAATAAATCTTAGTGATTCAGTCCTATCTCGAATCCGTGAAATGTACTGAAATTTCCTTAGTAACTCAAACTTTTTCCCAAATGACCTCCCATTTTTCTTCACAATAATAACCCCTCTTCATTTGATCATTGCTACTACCAAAATACCTAAAATTATGACTATTATCTCCATCTTGTTTATCACAAATGACATAGTCATAGAACACAACCCCACTAATAATTATGGCTACAATATGAATAGGAAGACCAGCCCAAAATCCAAAAAATGGATAAAATTGATAAACAAACCCAAAAATAATGGAAGAATACAAGAACCATATAGCAAATCCCAACAAGCTCTTCTCAAAAGACTTATTTTTCGATTGAATGTTTCGATATGTAGATGATAAGTTATTTGCCAAGTAAGCACTAAAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704038" ref_strand="+" ref_description="SGN-E704038 [FA23AG05]">
      <seq>gcacagttggtgcagcagacatttcaggcgccgaaatgttatccggctttgccacccaggagtgatgtgggtgcttatatggaagctgagctgggaatgaagattgcttgtggatttgagatgatttatcagttgaaaaagaggcagggcatggacggaaaagggagtacatgggatgcgtttaggctgagtctagagcggagtgggtacttcgaagggctgttaccaggatcgaaggagtataaaagattgatgaagaatgctgaggagtattacaagaatagttcactgcatgcaagagaaagtgctacactaagtgctccagtgcgaagaatagatgagatccttgcccttcctgattctgctgatgactttaaggatcaggagataccgccatctgatgatgattcatggctttatggtggagaggatgagctaaattccgttcttcaagagaggcaaaaggagatggaactttacaattcaaaaaggaaacagaaatcaaaagagcaggatgggcccagcaatcattctgataattttgatctaaaagatatatcgaactctatgcaagcatttgtcacaaaagtggccagttatgaaggtgcagaggttccagaggacaggaagtggactttgatgtcgatcactttatgaaagacctggaatcgtttatgaggggtcagggcaatgaagacattggccgtgatgttgatattgaagaagggtcatcatcagatatggagttcgatgaatctgaagatgagagtgatattgccgagccacatgatgataatgatgagggaggtgctgctttcatgcattcgtattcggacactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="26575" stop="29677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26875" g_stop="27179" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27180" i_stop="28049" i_length="870">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28050" g_stop="28370" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="626" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28371" i_stop="28805" i_length="435">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28806" g_stop="28929" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="750" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28930" i_stop="29286" i_length="357">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29287" g_stop="29377" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="841" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E704038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26875" e_stop="27179"/>
          <exon e_start="28050" e_stop="28370"/>
          <exon e_start="28806" e_stop="28929"/>
          <exon e_start="29287" e_stop="29377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGTTGGTGCAGCAGACATTTCAGGCGCCGAAATGTTATCCGGCTTTGCCACCCAGGAGTGATGTGGGTGCTTATATGGAAGCTGAGCTGGGAATGAAGATTGCTTGTGGATTTGAGATGATTTATCAGTTGAAAAAGAGGCAGGGCATGGACGGAAAAGGGAGTACATGGGATGCGTTTAGGCTGAGTCTAGAGCGGAGTGGGTACTTCGAAGGGCTGTTACCAGGATCGAAGGAGTATAAAAGATTGATGAAGAATGCTGAGGAGTATTACAAGAATAGTTCACTGCATGCAAGAGAAAGGTATCTATTGTATTAGTTTGTATAAAAGTCACGTTTCTTTGTAAAATTTTAGATGATCCACACTGATGACAGATTAGAATTTGGTACAACGGGATTAGATATCTGGAAATTTGGTGTATATATGTCTAATTACTTCCCTGCCTTGGGGGAAGGGTGTATGCACTGGCTTGTTTCAATGATACTATTGTTAAGTAACAAAAACAAAAAAAGTTGGTGACATCGTTAGAGCATCACTAATGATATCTGTAGATTGATTAAACTTTTTCTTAGTGTTCCTATCATCAGGATAATTTCTGCATATCGGGTAAAATATGAGCATTGCATTATCAGGATCTATATGGTGCCATTTGCAGCTTCACGAGTCCTAGGCTAAAAAGTTTCTTGGGTGTGTCTGTTTAGTTATATTTCTCGATGATTCGAAATCTTATGACTGTCCATCCCTGAATTATCAATAATGAGGTCAAGTTGTTGTTTACTTCCCCATGTGTCCTAGATGTCAAAAGGAAATTTGAAGCTTCTATATAGCAGAATTTGTGTATACGTACTGTATTCTATGAACCTTGTGCCTTATTTATTGAAAAAGAAAAAAACTGGAACTGGATTTTGTAGAGATCTGAATCTCCTAGAGAAGTTGTTAGTCTTTGAATATTTGTTTCTTGCCTTACTGAAAGGAAAGCTTGAAATTCTATGAAGTGACATGGTCATATTGTTTACTGTAATGATACTTTATATTCTCTGCTTGATTCACTGTTCTCTCCTCTTACTGCTCAATATACTGATAGTACTGTTTTTATGATTCTTGTCTGAGACGTTCTTGTGTGTCATAAGTATACCTTAACCTGCTACTAACCAATATTGAAAAAAAAACAGTGCTACACTAAGTGCTCCAGTGCGAAGAATAGATGAGATCCTTGCCCTTCCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAGGTTTTTGTGCTTCATTTCTCTCATTTCAACACATGAAGTGGCATATGCTTGGTTTCTTTTATCTTATTTTTACTGATGAGAGGTTACATTGTAGTATCCTATAGTTATACTTTGGGTTGGTCTTTTTTGTATGTATTCTGGTGTGCAAGGGTAAAGTTAGATCAGATAGTTAGCAAGAGATTTTGTCATCAATTTCATCATAAATATTAAGTTCCTTGTCAAATAGATATGAAGTCACCTACGAGGGTGGTTTGAGTAAGTGATTTCCAAATGGGGGATCACAGGTTCAAAACAACCTGCATGCCTTTTTGGTTGAGTTTGTCACACGGGGCTTGCCTAGGGCTGTTAACCTTTTCAGTGTGGTTTGTGGGCTATTACATTGAAGCGAGCTAGTAACTTATTTTGGCCTATCCTGTCTCCTATAGGAATGTAAAGGAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCGGTGAGTGAGATTTTTTTAATTTCTTCAAGTCAATCTTTTTGGTAACACTAGTAAAATTTTATATATTAACTTTACATGCAGATTAGAATTTGTCACTTATTTGTACCATCAGTGGCTCTATGCCAATGGAAATTCCTAGTCTAGATTGATATCTCAGAGCTTTTGGTTTATCTTTCAATTTTTCCAACCACTATTTGGTTGCTTTTGTTCCATTCTTTTTTGGGGTGAGGGGTTATGCTTAAAATTATAACATGTTCGCACATCACAAGGAAAAAAAAATCATCTACATGTCCTCCCCCTCCCTCTTTTAAAAGAACGCCGAGTAAGAAGCAAAACTGACATCTACTGCACATGCAGATGAATCTGAAGATGAGAGTGATATTGCCGAGCCACATGATGATAATGATGAGGGAGGTGCTGCTTTCATGCATTCGTATTCGGACACTCT</genome_strand>
        <mrna_strand>GCACAGTTGGTGCAGCAGACATTTCAGGCGCCGAAATGTTATCCGGCTTTGCCACCCAGGAGTGATGTGGGTGCTTATATGGAAGCTGAGCTGGGAATGAAGATTGCTTGTGGATTTGAGATGATTTATCAGTTGAAAAAGAGGCAGGGCATGGACGGAAAAGGGAGTACATGGGATGCGTTTAGGCTGAGTCTAGAGCGGAGTGGGTACTTCGAAGGGCTGTTACCAGGATCGAAGGAGTATAAAAGATTGATGAAGAATGCTGAGGAGTATTACAAGAATAGTTCACTGCATGCAAGAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTACACTAAGTGCTCCAGTGCGAAGAATAGATGAGATCCTTGCCCTTCCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCG.....................................................................................................................................................................................................................................................................................................................................................................ATGAATCTGAAGATGAGAGTGATATTGCCGAGCCACATGATGATAATGATGAGGGAGGTGCTGCTTTCATGCATTCGTATTCGGACACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703633" ref_strand="+" ref_description="SGN-E703633 [FA22AB10]">
      <seq>atccggctttgccacccaggagtgatgtgggtgcttatatggaagctgagctgggaatgaagattgcttgtggatttgagatgatttatcagttgaaaaagaggcagggcatggacggaaaagggagtacatgggatgcgtttaggctgagtctagagcggagtgggtacttcgaagggctgttaccaggatcgaaggagtataaaagattgatgaagaatgctgaggagtattacaagaatagttcactgcatgcaagagaaagtgctacactaagtgctccagtgcgaagaatagatgagatccttgcccttcctgattctgctgatgactttaaggatcaggagataccgccatctgatgatgattcatggctttatggtggagaggatgagctaaattccgttcttcaagagaggcaaaaggagatggaactttacaattcaaaaaggaaacagaaatcaaaagagcaggatgggcccagcaatcattctgataattttgatctaaaagatatatcgaactctatgcaagcatttgtcacaaaagtggccagttatgaaggtgcagaggttccagaggacaggaatgtaaaggaagtggactttgatgtcgatcactttatgaaagacctggaatcgtttatgaggggtcagggcaatgaagacattggccgtgatgttgatattgaagaagggtcatcatcagatatggagttcgatgaatctgaagatgagagtgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="26615" stop="29612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26915" g_stop="27179" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27180" i_stop="28049" i_length="870">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28050" g_stop="28370" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="586" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28371" i_stop="28795" i_length="425">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28796" g_stop="28929" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="720" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28930" i_stop="29286" i_length="357">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29287" g_stop="29312" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="746" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E703633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26915" e_stop="27179"/>
          <exon e_start="28050" e_stop="28370"/>
          <exon e_start="28796" e_stop="28929"/>
          <exon e_start="29287" e_stop="29312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGGCTTTGCCACCCAGGAGTGATGTGGGTGCTTATATGGAAGCTGAGCTGGGAATGAAGATTGCTTGTGGATTTGAGATGATTTATCAGTTGAAAAAGAGGCAGGGCATGGACGGAAAAGGGAGTACATGGGATGCGTTTAGGCTGAGTCTAGAGCGGAGTGGGTACTTCGAAGGGCTGTTACCAGGATCGAAGGAGTATAAAAGATTGATGAAGAATGCTGAGGAGTATTACAAGAATAGTTCACTGCATGCAAGAGAAAGGTATCTATTGTATTAGTTTGTATAAAAGTCACGTTTCTTTGTAAAATTTTAGATGATCCACACTGATGACAGATTAGAATTTGGTACAACGGGATTAGATATCTGGAAATTTGGTGTATATATGTCTAATTACTTCCCTGCCTTGGGGGAAGGGTGTATGCACTGGCTTGTTTCAATGATACTATTGTTAAGTAACAAAAACAAAAAAAGTTGGTGACATCGTTAGAGCATCACTAATGATATCTGTAGATTGATTAAACTTTTTCTTAGTGTTCCTATCATCAGGATAATTTCTGCATATCGGGTAAAATATGAGCATTGCATTATCAGGATCTATATGGTGCCATTTGCAGCTTCACGAGTCCTAGGCTAAAAAGTTTCTTGGGTGTGTCTGTTTAGTTATATTTCTCGATGATTCGAAATCTTATGACTGTCCATCCCTGAATTATCAATAATGAGGTCAAGTTGTTGTTTACTTCCCCATGTGTCCTAGATGTCAAAAGGAAATTTGAAGCTTCTATATAGCAGAATTTGTGTATACGTACTGTATTCTATGAACCTTGTGCCTTATTTATTGAAAAAGAAAAAAACTGGAACTGGATTTTGTAGAGATCTGAATCTCCTAGAGAAGTTGTTAGTCTTTGAATATTTGTTTCTTGCCTTACTGAAAGGAAAGCTTGAAATTCTATGAAGTGACATGGTCATATTGTTTACTGTAATGATACTTTATATTCTCTGCTTGATTCACTGTTCTCTCCTCTTACTGCTCAATATACTGATAGTACTGTTTTTATGATTCTTGTCTGAGACGTTCTTGTGTGTCATAAGTATACCTTAACCTGCTACTAACCAATATTGAAAAAAAAACAGTGCTACACTAAGTGCTCCAGTGCGAAGAATAGATGAGATCCTTGCCCTTCCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAGGTTTTTGTGCTTCATTTCTCTCATTTCAACACATGAAGTGGCATATGCTTGGTTTCTTTTATCTTATTTTTACTGATGAGAGGTTACATTGTAGTATCCTATAGTTATACTTTGGGTTGGTCTTTTTTGTATGTATTCTGGTGTGCAAGGGTAAAGTTAGATCAGATAGTTAGCAAGAGATTTTGTCATCAATTTCATCATAAATATTAAGTTCCTTGTCAAATAGATATGAAGTCACCTACGAGGGTGGTTTGAGTAAGTGATTTCCAAATGGGGGATCACAGGTTCAAAACAACCTGCATGCCTTTTTGGTTGAGTTTGTCACACGGGGCTTGCCTAGGGCTGTTAACCTTTTCAGTGTGGTTTGTGGGCTATTACATTGAAGCGAGCTAGTAACTTATTTTGGCCTATCCTGTCTCCTATAGGAATGTAAAGGAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCGGTGAGTGAGATTTTTTTAATTTCTTCAAGTCAATCTTTTTGGTAACACTAGTAAAATTTTATATATTAACTTTACATGCAGATTAGAATTTGTCACTTATTTGTACCATCAGTGGCTCTATGCCAATGGAAATTCCTAGTCTAGATTGATATCTCAGAGCTTTTGGTTTATCTTTCAATTTTTCCAACCACTATTTGGTTGCTTTTGTTCCATTCTTTTTTGGGGTGAGGGGTTATGCTTAAAATTATAACATGTTCGCACATCACAAGGAAAAAAAAATCATCTACATGTCCTCCCCCTCCCTCTTTTAAAAGAACGCCGAGTAAGAAGCAAAACTGACATCTACTGCACATGCAGATGAATCTGAAGATGAGAGTGATATT</genome_strand>
        <mrna_strand>ATCCGGCTTTGCCACCCAGGAGTGATGTGGGTGCTTATATGGAAGCTGAGCTGGGAATGAAGATTGCTTGTGGATTTGAGATGATTTATCAGTTGAAAAAGAGGCAGGGCATGGACGGAAAAGGGAGTACATGGGATGCGTTTAGGCTGAGTCTAGAGCGGAGTGGGTACTTCGAAGGGCTGTTACCAGGATCGAAGGAGTATAAAAGATTGATGAAGAATGCTGAGGAGTATTACAAGAATAGTTCACTGCATGCAAGAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTACACTAAGTGCTCCAGTGCGAAGAATAGATGAGATCCTTGCCCTTCCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTAAAGGAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCG.....................................................................................................................................................................................................................................................................................................................................................................ATGAATCTGAAGATGAGAGTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702176" ref_strand="+" ref_description="SGN-E702176 [FA18AA08]">
      <seq>cctgattctgctgatgactttaaggatcaggagataccgccatctgatgatgattcatggctttatggtggagaggatgagctaaattccgttcttcaagagaggcaaaaggagatggaactttacaattcaaaaaggaaacagaaatcaaaagagcaggatgggcccagcaatcattctgataattttgatctaaaagatatatcgaactctatgcaagcatttgtcacaaaagtggccagttatgaaggtgcagaggttccagaggacaggaatgtaaaggaagtggactttgatgtcgatcactttatgaaagacctggaatcgtttatgaggggtcagggcaatgaagacattggccgtgatgttgatattgaagaagggtcatcatcagatatggagttcgatgaatctgaagatgagagtgatattgccgagccacatgatgataatgatgagggaggtgctgctttcatgcattcgtattcggacactctgaatgatgaactgaaaggcaccacactaagtaatacctttgtccgcgcaaatggagagtctgagtccataaagaaagatgagggaacatctactgctgcagaaaacatggaagaggaggatttcagtcctgtagatgttgatttcaatcttgtaaagaatttcctggattcgttttcttctcaagatggacttccaggacctgcttctaacttgcttggacttatgggtctacagctaccaccagatgctagcaaagggaaataaccatattatacacaaacttgtttcctcattcttcttttccttgcctttttctaaacggcaatctttacaatactatgtattacgtatgttttaacttcaaacggagaaaaaaggaggaggtggatttatgtggtatttttcatttttgaccatcnaataatttatatattgataaattatgtaaaaaatatttataggtgacgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="27799" stop="30338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28099" g_stop="28370" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28371" i_stop="28795" i_length="425">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28796" g_stop="28929" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="406" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28930" i_stop="29286" i_length="357">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29287" g_stop="29459" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="579" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29460" i_stop="29649" i_length="190">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29650" g_stop="30037" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="967" r_length="388" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="968" polyA_stop="984"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E702176" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>967</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28099" e_stop="28370"/>
          <exon e_start="28796" e_stop="28929"/>
          <exon e_start="29287" e_stop="29459"/>
          <exon e_start="29650" e_stop="30037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAGGTTTTTGTGCTTCATTTCTCTCATTTCAACACATGAAGTGGCATATGCTTGGTTTCTTTTATCTTATTTTTACTGATGAGAGGTTACATTGTAGTATCCTATAGTTATACTTTGGGTTGGTCTTTTTTGTATGTATTCTGGTGTGCAAGGGTAAAGTTAGATCAGATAGTTAGCAAGAGATTTTGTCATCAATTTCATCATAAATATTAAGTTCCTTGTCAAATAGATATGAAGTCACCTACGAGGGTGGTTTGAGTAAGTGATTTCCAAATGGGGGATCACAGGTTCAAAACAACCTGCATGCCTTTTTGGTTGAGTTTGTCACACGGGGCTTGCCTAGGGCTGTTAACCTTTTCAGTGTGGTTTGTGGGCTATTACATTGAAGCGAGCTAGTAACTTATTTTGGCCTATCCTGTCTCCTATAGGAATGTAAAGGAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCGGTGAGTGAGATTTTTTTAATTTCTTCAAGTCAATCTTTTTGGTAACACTAGTAAAATTTTATATATTAACTTTACATGCAGATTAGAATTTGTCACTTATTTGTACCATCAGTGGCTCTATGCCAATGGAAATTCCTAGTCTAGATTGATATCTCAGAGCTTTTGGTTTATCTTTCAATTTTTCCAACCACTATTTGGTTGCTTTTGTTCCATTCTTTTTTGGGGTGAGGGGTTATGCTTAAAATTATAACATGTTCGCACATCACAAGGAAAAAAAAATCATCTACATGTCCTCCCCCTCCCTCTTTTAAAAGAACGCCGAGTAAGAAGCAAAACTGACATCTACTGCACATGCAGATGAATCTGAAGATGAGAGTGATATTGCCGAGCCACATGATGATAATGATGAGGGAGGTGCTGCTTTCATGCATTCGTATTCGGACACTCTGAATGATGAACTGAAAGGCACCACACTAAGTAATACCTTTGTCCGCGCAAATGGAGAGTCTGAGTCCATAAAGAAAGATGAGGTTAGTCTACACTTATTCCTGCTATACTAAATTTACAGTTGATTCATTTGTCCCAAACGAATAGAGAATGTGGCTTGTTGCTTGATATGCCCCGCTATGTCACGAAACATGGAAACTGTTATGGTTCGTTGCATTTGTATTTACGTCCTATGTTGCTACGTCCACTCATTGAAGCAAATATATGTATCAGGGAACATCTACTGCTGCAGAAAACATGGAAGAGGAGGATTTCAGTCCTGTAGATGTTGATTTCAATCTTGTAAAGAATTTCCTGGATTCGTTTTCTTCTCAAGATGGACTTCCAGGACCTGCTTCTAACTTGCTTGGACTTATGGGTCTACAGCTACCACCAGATGCTAGCAAAGGGAAATAACCATATTATACACAAACTTGTTTCCTCATTCTTCTTTTCCTTGCCTTTTTCTAAACGGCAATCTTTACAATACTATGTATTACGTATGTTTTAACTTCAAACGGAGAAAAAAGGAGGAGGTGGATTTATGTGGTATTTTTCATTTTTGACCATCAAATAATTTATATATTGATAAATTATGTAAAAAATATTATAAGTTGACGAA</genome_strand>
        <mrna_strand>CCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTAAAGGAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCG.....................................................................................................................................................................................................................................................................................................................................................................ATGAATCTGAAGATGAGAGTGATATTGCCGAGCCACATGATGATAATGATGAGGGAGGTGCTGCTTTCATGCATTCGTATTCGGACACTCTGAATGATGAACTGAAAGGCACCACACTAAGTAATACCTTTGTCCGCGCAAATGGAGAGTCTGAGTCCATAAAGAAAGATGAG..............................................................................................................................................................................................GGAACATCTACTGCTGCAGAAAACATGGAAGAGGAGGATTTCAGTCCTGTAGATGTTGATTTCAATCTTGTAAAGAATTTCCTGGATTCGTTTTCTTCTCAAGATGGACTTCCAGGACCTGCTTCTAACTTGCTTGGACTTATGGGTCTACAGCTACCACCAGATGCTAGCAAAGGGAAATAACCATATTATACACAAACTTGTTTCCTCATTCTTCTTTTCCTTGCCTTTTTCTAAACGGCAATCTTTACAATACTATGTATTACGTATGTTTTAACTTCAAACGGAGAAAAAAGGAGGAGGTGGATTTATGTGGTATTTTTCATTTTTGACCATCNAATAATTTATATATTGATAAATTATGTAAAAAATATTTATAGGTGACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583166" ref_strand="+" ref_description="SGN-E583166 [8799]">
      <seq>taaaagatatatcgaagtctatgcaagcatttgtcacaaaagtggccagttatgaaggtgcagaggttccagaagacaggaatgaaaaggatgtggactttgatgtggatcgctttatgaaagacatggaatcgtttgtgaggcgtcaggggcaatgaagacactggcagtgatgtcgatatagaagaaggatcatcattggatatggagttcgatgaatctgaagatgagagtgatattgccaagccatatgatgatactgatgagagaggtgccgctttcatgcattcgtattcggacactctgaatgaagaactgaaaggcaccactctaagtaatacctttgtccgtgcaaatggagagtccataaagaaagataagggaacatctactgctgcagaaagcatggaagaggatttcactccggtagatgtggatttcaatctcgtaaagaatttcctcgattcgttttcttctcaagatggactttccaggacctggttctaactttgctttggacttatggggtctacaagtaccaaccagatgctaaacaaaaggggaaataaccatattttctggccagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="27992" stop="30141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28292" g_stop="28370" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28371" i_stop="28795" i_length="425">
            <donor d_prob="0.886" d_score="0.98"/>
            <acceptor a_prob="0.913" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28796" g_stop="28929" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="214" r_length="135" r_score="0.881"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28930" i_stop="29286" i_length="357">
            <donor d_prob="0.988" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29287" g_stop="29459" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="381" r_length="167" r_score="0.913"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29460" i_stop="29649" i_length="190">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.976" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29650" g_stop="29814" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="548" r_length="167" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E583166" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28292" e_stop="28370"/>
          <exon e_start="28796" e_stop="28929"/>
          <exon e_start="29287" e_stop="29459"/>
          <exon e_start="29650" e_stop="29814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAGGTTTTTGTGCTTCATTTCTCTCATTTCAACACATGAAGTGGCATATGCTTGGTTTCTTTTATCTTATTTTTACTGATGAGAGGTTACATTGTAGTATCCTATAGTTATACTTTGGGTTGGTCTTTTTTGTATGTATTCTGGTGTGCAAGGGTAAAGTTAGATCAGATAGTTAGCAAGAGATTTTGTCATCAATTTCATCATAAATATTAAGTTCCTTGTCAAATAGATATGAAGTCACCTACGAGGGTGGTTTGAGTAAGTGATTTCCAAATGGGGGATCACAGGTTCAAAACAACCTGCATGCCTTTTTGGTTGAGTTTGTCACACGGGGCTTGCCTAGGGCTGTTAACCTTTTCAGTGTGGTTTGTGGGCTATTACATTGAAGCGAGCTAGTAACTTATTTTGGCCTATCCTGTCTCCTATAGGAATGTAAAGGAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCA-GGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCGGTGAGTGAGATTTTTTTAATTTCTTCAAGTCAATCTTTTTGGTAACACTAGTAAAATTTTATATATTAACTTTACATGCAGATTAGAATTTGTCACTTATTTGTACCATCAGTGGCTCTATGCCAATGGAAATTCCTAGTCTAGATTGATATCTCAGAGCTTTTGGTTTATCTTTCAATTTTTCCAACCACTATTTGGTTGCTTTTGTTCCATTCTTTTTTGGGGTGAGGGGTTATGCTTAAAATTATAACATGTTCGCACATCACAAGGAAAAAAAAATCATCTACATGTCCTCCCCCTCCCTCTTTTAAAAGAACGCCGAGTAAGAAGCAAAACTGACATCTACTGCACATGCAGATGAATCTGAAGATGAGAGTGATATTGCCGAGCCACATGATGATAATGATGAGGGAGGTGCTGCTTTCATGCATTCGTATTCGGACACTCTGAATGATGAACTGAAAGGCACCACACTAAGTAATACCTTTGTCCGCGCAAATGGAGAGTCTGAGTCCATAAAGAAAGATGAGGTTAGTCTACACTTATTCCTGCTATACTAAATTTACAGTTGATTCATTTGTCCCAAACGAATAGAGAATGTGGCTTGTTGCTTGATATGCCCCGCTATGTCACGAAACATGGAAACTGTTATGGTTCGTTGCATTTGTATTTACGTCCTATGTTGCTACGTCCACTCATTGAAGCAAATATATGTATCAGGGAACATCTACTGCTGCAGAAAACATGGAAGAGGAGGATTTCAGTCCTGTAGATGTTGATTTCAATCTTGTAAAGAATTTCCTGGATTCGTTTTCTTCTCAAGATGGAC-TTCCAGGACCTGCTTCTAACT-TGC-TTGGACTTAT-GGGTCTACAGCTACC-ACCAGAT</genome_strand>
        <mrna_strand>TAAAAGATATATCGAAGTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAAGACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAAAAGGATGTGGACTTTGATGTGGATCGCTTTATGAAAGACATGGAATCGTTTGTGAGGCGTCAGGGGCAATGAAGACACTGGCAGTGATGTCGATATAGAAGAAGGATCATCATTGGATATGGAGTTCG.....................................................................................................................................................................................................................................................................................................................................................................ATGAATCTGAAGATGAGAGTGATATTGCCAAGCCATATGATGATACTGATGAGAGAGGTGCCGCTTTCATGCATTCGTATTCGGACACTCTGAATGAAGAACTGAAAGGCACCACTCTAAGTAATACCTTTGTCCGTGCAAAT-G-GA----GAGTCCATAAAGAAAGATAAG..............................................................................................................................................................................................GGAACATCTACTGCTGCAGAAAGCATGG-A-A-GAGGATTTCACTCCGGTAGATGTGGATTTCAATCTCGTAAAGAATTTCCTCGATTCGTTTTCTTCTCAAGATGGACTTTCCAGGACCTGGTTCTAACTTTGCTTTGGACTTATGGGGTCTACAAGTACCAACCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402682" ref_strand="+" ref_description="SGN-E402682 [PPC-8-M4]">
      <seq>gtttgtagtggagtagctttttgttgtgactttaactgagaacatccaccaatcaaatagagcatagagaaggagaaagaaataaaaaaatcagtgatgggaacggtggcgcaagaggcggcgattgacttactgaagggtgagattccggtggaggaagatgaatcgctgcttctctccggcgacgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcacagtaggagctggcaatttggctccggtggcacctgatagacaaatttcagcaatggttgatgagtcagttaaacttgcagaagtgttctgtgagaagaaatggcctatctatgctcttcgtgattctcatcatcctgatgtgcctgagccacctcatcctcctcattgtatcgctggaacagatgaatctgagttggttcctggttagtatatccttcgtgttttgttctttcaggttcaaagtgagttttgtcaatgttgtcttttatcatcatttgcagctctgcagtggttggaaaatgaacctaatgtgacagtgcgatgcaaggattgtattgatgggttcattggatcgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="30354" stop="32358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30626" g_stop="30823" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="252" r_length="193" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30824" i_stop="31716" i_length="893">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31717" g_stop="32058" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="592" r_length="340" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E402682" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30626" e_stop="30823"/>
          <exon e_start="31717" e_stop="32058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAAGGAGAAGACAGAAAATAATTTTAAAAAAATCAGTGATGGGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTG</genome_strand>
        <mrna_strand>GAG-CATAGAGAAG-GAGAA-AGAA--ATAAAAAAATCAGTGATGGGAACGGTGGCGCAAGAGGCGGCGATTGACTTACTGAAGGGTGAGATTCCGGTGGAGGAAGATGAATCGCTGCTTCTCTCCGGCGACGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACAGTAGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGGCACCTGATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAGAAGTGTTCTGTGAGAAGAAATGGCCTATCTATGCTCTTCGTGATTCTCATCATCCTGATGTGCCTGAGCCACCTCATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATATCCTTCGTGTTTTGT-T-CTTTCAGGTTCAAAGTGAGTTTTGTCAATGTTGTCTTTTATCATCATTTGCAGCTCTGCAGTGGTTGGAAAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGGTTCATTGGATCGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620553" ref_strand="+" ref_description="SGN-E620553 [71255]">
      <seq>aactagtggatcccccgccgctgcagtaatgggaacggtggcgcaagaggcggcgattgacttactgaagagtgagattccggtggaggaagatgaatcgctgcttctctccggcgacgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcacagtaggagctggcaatttggctccggtggcacctgatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgctcttcgtgattctcatcatcctgatgtgcctgagccacctcatcctcctcattgtatcactggaacagatgaatctgagttggttcctgctctgcagtggttggaaaatgaaccaaatgtgacagtgcgatgcaaggattgtattgatgggttccttggatcgattgagaaagatggatctaatgtctttgtaaattgggtgaaagctaatgagattaaaactatattggttgtagggatatgcacggacgtatgcgtgcttgattttgtgtgttctgtcttatctgcacggaaccgtggatttctctcccccctgaaagatgtgattgtatattcccctggctgtgctacttttgatcttccagtccagattgccagaaatattaaaggagctttacctcatccacaggaattgatgcatcacatagggcctttacatggccaaaggaagagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="30363" stop="32869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30666" g_stop="30823" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="184" r_length="158" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30824" i_stop="31716" i_length="893">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31717" g_stop="31900" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="368" r_length="184" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31980" i_length="80">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31981" g_stop="32114" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="502" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32115" i_stop="32202" i_length="88">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.852" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32203" g_stop="32388" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="688" r_length="186" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32389" i_stop="32524" i_length="136">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32525" g_stop="32569" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="734" r_length="46" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E620553" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E620553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30666" e_stop="30823"/>
          <exon e_start="31717" e_stop="31900"/>
          <exon e_start="31981" e_stop="32114"/>
          <exon e_start="32203" e_stop="32388"/>
          <exon e_start="32525" e_stop="32569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAGGTGAGCTGATAAGTATATACACATGCATTTGGGCTGTTAGCCATAAAAACTTGATCCTCAGATACTCTTCTTTTTCACGGGAACAAATCTCGAATGTCTTTTGACAATTTCACCATTCCCATCATTTGCTATGTAGGAATTCATGCATCACATA-GGCCTTTACATGGCCAAAGGAAGAGGA</genome_strand>
        <mrna_strand>TAATGGGAACGGTGGCGCAAGAGGCGGCGATTGACTTACTGAAGAGTGAGATTCCGGTGGAGGAAGATGAATCGCTGCTTCTCTCCGGCGACGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACAGTAGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGGCACCTGATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCTCTTCGTGATTCTCATCATCCTGATGTGCCTGAGCCACCTCATCCTCCTCATTGTATCACTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CTCTGCAGTGGTTGGAAAATGAACCAAATGTGACAGTGCGATGCAAGGATTGTATTGATGGGTTCCTTGGATCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAACT........................................................................................ATATTGGTTGTAGGGATATGCACGGACGTATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGGAACCGTGGATTTCTCTCCCCCCTGAAAGATGTGATTGTATATTCCCCTGGCTGTGCTACTTTTGATCTTCCAGTCCAGATTGCCAGAAATATTAAAGGAGCTTTACCTCATCCACAG........................................................................................................................................GAATTGATGCATCACATAGGGCCTTTACATGGCCAAAGGAAGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727212" ref_strand="+" ref_description="SGN-E727212 [LA14AC04]">
      <seq>tgggaacagtggggcaagaggctgcgattgacttactgaagagtgagattccggcggaggaagatgaaccgctgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgtgattcgcatcatcctgatgtgcctgagccacctaatcctcctcattgtatcgctggaacagatgaatctgagttggttcctgcactgcagtggttggagaatgaacctaatgtgacagtgcgatgcaaggattgtattgatggtttccttggctcgattgagaaagatggatctaatgtctttgtaaattgggtgaaagctaatgagattaaaattatattggttgtagggatatgcacggacatatgcgtgcttgattttgtgtgttctgtcttatctgcacgaaaccgtggatttctctccccactgaaagacgtgattgtatattcccctggctgcgctacctatgatcttccagtccagattgccagaaatataaaaggagctttacctcatccacaggaattcatgcatcacataggcctttacatggccaaaggaagaggagcaaaagtagtttcacatatctcatttgacacgacaaccaacgagacataactttgaacaatgagattaagatccatatttctcattcgaaactctgaaggacactgctacagctattgcagacactgcttagtatatattaagttataatagtaaaataaatatgccccatatgcatcttctcttgttcagttgggtgtgcagcttaacttctcttgttcaaaaactactaatacttctaccatattggaataaactatcccgtttttggatgcccaataaatttgtcaataaacaacttttgattggtccaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="30369" stop="33176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30669" g_stop="30823" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30824" i_stop="31716" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31717" g_stop="31900" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="339" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31980" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31981" g_stop="32114" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="473" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32115" i_stop="32202" i_length="88">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32203" g_stop="32388" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="659" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32389" i_stop="32524" i_length="136">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32525" g_stop="32869" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="1007" r_length="348" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E727212" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1004</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30669" e_stop="30823"/>
          <exon e_start="31717" e_stop="31900"/>
          <exon e_start="31981" e_stop="32114"/>
          <exon e_start="32203" e_stop="32388"/>
          <exon e_start="32525" e_stop="32869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAGGTGAGCTGATAAGTATATACACATGCATTTGGGCTGTTAGCCATAAAAACTTGATCCTCAGATACTCTTCTTTTTCACGGGAACAAATCTCGAATGTCTTTTGACAATTTCACCATTCCCATCATTTGCTATGTAGGAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAGGACACTGCTACAGCTATTGCAGACACTGCTTAGTATATATTAAGTTATAGTAGTAAGATAAATATG-CCCATATGCATCTTCTCTTGTTCAGTTGGCTGTGCAGC-TAACTTCTCTTGTTCCAAAACTACTAATACTTCTACCATATTGTAATAAACTATCACG-TTTTGGATGCCAAATAAATTTGTCTATAGACAACTTTG</genome_strand>
        <mrna_strand>TGGGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATT........................................................................................ATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAG........................................................................................................................................GAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAGGACACTGCTACAGCTATTGCAGACACTGCTTAGTATATATTAAGTTATAATAGTAAAATAAATATGCCCCATATGCATCTTCTCTTGTTCAGTTGGGTGTGCAGCTTAACTTCTCTTGTTCAAAAACTACTAATACTTCTACCATATTGGAATAAACTATCCCGTTTTTGGATGCCCAATAAATTTGTCAATAAACAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726132" ref_strand="+" ref_description="SGN-E726132 [LA10BF09]">
      <seq>tgggaacagtggggcaagaggctgcgattgacttactgaagagtgagattccggcggaggaagatgaaccgctgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgtgattcgcatcatcctgatgtgcctgagccacctaatcctcctcattgtatcgctggaacagatgaatctgagttggttcctgcactgcagtggttggagaatgaacctaatgtgacagtgcgatgcaaggattgtattgatggtttccttggctcgattgagagagatggatctaatgtctttcgtaattgggtgaaagctaatgagatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="30369" stop="32409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30669" g_stop="30823" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30824" i_stop="31716" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31717" g_stop="31900" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="339" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31980" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31981" g_stop="32109" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="468" r_length="129" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E726132" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30669" e_stop="30823"/>
          <exon e_start="31717" e_stop="31900"/>
          <exon e_start="31981" e_stop="32109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTA</genome_strand>
        <mrna_strand>TGGGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAGAGATGGATCTAATGTCTTTCGTAATTGGGTGAAAGCTAATGAGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297631" ref_strand="+" ref_description="SGN-E297631 [cLET-28-C6]">
      <seq>ggaacagtggggcaagaggctgcgattgacttactgaagagtgagattccggcggaggaagatgaaccgctgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgtgattcgcatcatcctgatgtgcctgagccacctaatcctcctcattgtatcgctggaacagatgaatctgagttggttcctgcactgcagtggttggagaatgaacctaatgtgacagtgcgatgcaaggattgtattgatggtttccttggctcgattgagaaagatggatctaatgtctttgtaaattgggtgaaagctaatgagattaaaattatattggttgtagggatatgcacggacatatgcgtgcttgattttgtgtgttctgtcttatctgcacgaaaccgtggatttctctccccactgaaagacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="30371" stop="32604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30671" g_stop="30823" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30824" i_stop="31716" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31717" g_stop="31900" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="337" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31980" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31981" g_stop="32114" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="471" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32115" i_stop="32202" i_length="88">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32203" g_stop="32304" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="573" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E297631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30671" e_stop="30823"/>
          <exon e_start="31717" e_stop="31900"/>
          <exon e_start="31981" e_stop="32114"/>
          <exon e_start="32203" e_stop="32304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTG</genome_strand>
        <mrna_strand>GGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATT........................................................................................ATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296709" ref_strand="+" ref_description="SGN-E296709 [cLET-39-L22]">
      <seq>ggaacagtggggcaagaggctgcgattgacttactgaagagtgagattccggcggaggaagatgaaccgctgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgtgattcgcatcatcctgatgtgcctgagccacctaatcctcctcattgtatcgctggaacagatgaatctgagttggttcctgcactgcagtggttggagaatgaacctaatgtgacagtgcgatgcaaggattgtattgatggtttccttggctcgattgagaaagatggatctaatgtctttgtaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="30371" stop="32389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30671" g_stop="30823" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30824" i_stop="31716" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31717" g_stop="31900" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="337" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31980" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31981" g_stop="32089" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="446" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E296709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30671" e_stop="30823"/>
          <exon e_start="31717" e_stop="31900"/>
          <exon e_start="31981" e_stop="32089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTG</genome_strand>
        <mrna_strand>GGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485472" ref_strand="+" ref_description="SGN-E485472 [cSTE-18-I23]">
      <seq>gaacggtggcgcaagaggcggcgattgacttactgaagagtgagattccggtggaggaagatgaatcgctgtttctctccggcgacgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcacagtaggagctggcaatttggctccggtggcacctgatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgctcttcgtgattctcatcatcctgatgtgcctgagccacctcatcctcctcattgtatcactggaacagatgaatctgagttggttcctgctctgcagtggttggaaaatgaaccaaatgtgacagtgcgatgcaaggattgtattgatgggttccttggatcgattgagaaagatggatctaatgtctttgtaaattgggtgaaagctaatgagattaaaactatattggttgtagggatatgcacggacgtatgcgtgcttgattttgtgtgttctgtcttatctgcacggaaccgtggatttctctcccccctgaaagatgtgattgtatattcccctggctgtgctacttttgatcttccagtccagattgccagaaatattaaaggagctttacctcatccacaggaattgatgcatcacataggcctttacatggccaaaggaagaagagcaaaagtagtttcacatatctcatttgacacaacaaccaacgagacataactctgaacgatgagatttagatccatacctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="30372" stop="32953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30672" g_stop="30823" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30824" i_stop="31716" i_length="893">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31717" g_stop="31900" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="336" r_length="184" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31980" i_length="80">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31981" g_stop="32114" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="470" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32115" i_stop="32202" i_length="88">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.852" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32203" g_stop="32388" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="656" r_length="186" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32389" i_stop="32524" i_length="136">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32525" g_stop="32653" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="785" r_length="129" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E485472" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30672" e_stop="30823"/>
          <exon e_start="31717" e_stop="31900"/>
          <exon e_start="31981" e_stop="32114"/>
          <exon e_start="32203" e_stop="32388"/>
          <exon e_start="32525" e_stop="32653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAGGTGAGCTGATAAGTATATACACATGCATTTGGGCTGTTAGCCATAAAAACTTGATCCTCAGATACTCTTCTTTTTCACGGGAACAAATCTCGAATGTCTTTTGACAATTTCACCATTCCCATCATTTGCTATGTAGGAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTC</genome_strand>
        <mrna_strand>GAACGGTGGCGCAAGAGGCGGCGATTGACTTACTGAAGAGTGAGATTCCGGTGGAGGAAGATGAATCGCTGTTTCTCTCCGGCGACGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACAGTAGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGGCACCTGATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCTCTTCGTGATTCTCATCATCCTGATGTGCCTGAGCCACCTCATCCTCCTCATTGTATCACTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CTCTGCAGTGGTTGGAAAATGAACCAAATGTGACAGTGCGATGCAAGGATTGTATTGATGGGTTCCTTGGATCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAACT........................................................................................ATATTGGTTGTAGGGATATGCACGGACGTATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGGAACCGTGGATTTCTCTCCCCCCTGAAAGATGTGATTGTATATTCCCCTGGCTGTGCTACTTTTGATCTTCCAGTCCAGATTGCCAGAAATATTAAAGGAGCTTTACCTCATCCACAG........................................................................................................................................GAATTGATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAAGAGCAAAAGTAGTTTCACATATCTCATTTGACACAACAACCAACGAGACATAACTCTGAACGATGAGATTTAGATCCATACCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484996" ref_strand="+" ref_description="SGN-E484996 [cSTE-16-K15]">
      <seq>gaacggtggcgcaagaggcggcgattgacttactgaagagtgagattccggtggaggaagatgaatcgctgtttctctccggcgacgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcacagtaggagctggcaatttggctccggtggcacctgatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgctcttcgtgattctcatcatcctgatgtgcctgagccacctcatcctcctcattgtatcactggaacagatgaatctgagttggttcctgctctgcagtggttggaaaatgaaccaaatgtgacagtgcgatgcaaggattgtattgatgggttccttggatcgattgagaaagatggatctaatgtctttgtaaattgggtgaaagctaatgagattaaaactatattggttgtagggatatgcacggacgtatgcgtgcttgattttgtgtgttctgtcttatctgcacggaaccgtggatttctctcccccctgaaagatgtgattgtatattcccctggctgtgctacttttgatcttccagtccagattgccagaaatattaaaggagctttacctcatccacaggaattgatgcatcacataggcctttacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="30372" stop="32854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30672" g_stop="30823" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30824" i_stop="31716" i_length="893">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31717" g_stop="31900" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="336" r_length="184" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31980" i_length="80">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31981" g_stop="32114" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="470" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32115" i_stop="32202" i_length="88">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.852" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32203" g_stop="32388" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="656" r_length="186" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32389" i_stop="32524" i_length="136">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32525" g_stop="32554" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="686" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E484996" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30672" e_stop="30823"/>
          <exon e_start="31717" e_stop="31900"/>
          <exon e_start="31981" e_stop="32114"/>
          <exon e_start="32203" e_stop="32388"/>
          <exon e_start="32525" e_stop="32554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAGGTGAGCTGATAAGTATATACACATGCATTTGGGCTGTTAGCCATAAAAACTTGATCCTCAGATACTCTTCTTTTTCACGGGAACAAATCTCGAATGTCTTTTGACAATTTCACCATTCCCATCATTTGCTATGTAGGAATTCATGCATCACATAGGCCTTTACATG</genome_strand>
        <mrna_strand>GAACGGTGGCGCAAGAGGCGGCGATTGACTTACTGAAGAGTGAGATTCCGGTGGAGGAAGATGAATCGCTGTTTCTCTCCGGCGACGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACAGTAGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGGCACCTGATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCTCTTCGTGATTCTCATCATCCTGATGTGCCTGAGCCACCTCATCCTCCTCATTGTATCACTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CTCTGCAGTGGTTGGAAAATGAACCAAATGTGACAGTGCGATGCAAGGATTGTATTGATGGGTTCCTTGGATCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAACT........................................................................................ATATTGGTTGTAGGGATATGCACGGACGTATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGGAACCGTGGATTTCTCTCCCCCCTGAAAGATGTGATTGTATATTCCCCTGGCTGTGCTACTTTTGATCTTCCAGTCCAGATTGCCAGAAATATTAAAGGAGCTTTACCTCATCCACAG........................................................................................................................................GAATTGATGCATCACATAGGCCTTTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259568" ref_strand="+" ref_description="SGN-E259568 [cLEG-42-F6]">
      <seq>aacagtggggcaagaggctgcgattgacttactgaagagtgagattccggcggaggaagatgaaccggtgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcattaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcaacaatggttgatgagtcagctaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgagattcgcatcatactgatgtgcctgagccacctaatcctcctcattggatcgctggaacaaatgaatcttaattggttcctgcactgcagaggttggagaatgaacctaatgtgacagcgcgatgccaggattgtattgatggttttcttggctcacttgaaaaagacggatctaatgtctttgcaaattgtgtgacagctaatgagatgacaattatattggttgtatggatatgcacggacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="30373" stop="32534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30673" g_stop="30823" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30824" i_stop="31716" i_length="893">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31717" g_stop="31900" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="335" r_length="184" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31980" i_length="80">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31981" g_stop="32114" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="469" r_length="134" r_score="0.903"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32115" i_stop="32202" i_length="88">
            <donor d_prob="0.928" d_score="0.88"/>
            <acceptor a_prob="0.852" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32203" g_stop="32234" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="501" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E259568" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30673" e_stop="30823"/>
          <exon e_start="31717" e_stop="31900"/>
          <exon e_start="31981" e_stop="32114"/>
          <exon e_start="32203" e_stop="32234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATG</genome_strand>
        <mrna_strand>AACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGGTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCATTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAACAATGGTTGATGAGTCAGCTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGAGATTCGCATCATACTGATGTGCCTGAGCCACCTAATCCTCCTCATTGGATCGCTGGAACAAATGAATCTTAATTGGTTCCTG................................................................................CACTGCAGAGGTTGGAGAATGAACCTAATGTGACAGCGCGATGCCAGGATTGTATTGATGGTTTTCTTGGCTCACTTGAAAAAGACGGATCTAATGTCTTTGCAAATTGTGTGACAGCTAATGAGATGACAATT........................................................................................ATATTGGTTGTATGGATATGCACGGACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697326" ref_strand="+" ref_description="SGN-E697326 [FA02AH04]">
      <seq>cgttaaggcaagaggctgcgattgacttactgaagagtgagcctccggcggaggaagatgaaccgctgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgtgattcgcatcatcctgatgtgcctgagccacctaatcctcctcattgtatcgctggaacagatgaatctgagttggttcctgcactgcagtggttggagaatgaacctaatgtgacagtgcgatgcaaggattgtattgatggtttccttggctcgattgagaaagatggatctaatgtctttgtaaattgggtgaaagctaatgagattaaaattatattggttgtagggatatgcacggacatatgcgtgcttgattttgtgtgttctgtcttatctgcacgaaaccgtggatttctctccccactgaaagacgtgattgtatattcccctggctgcgctacctatgatcttccagtccagattgccagaaatataaaaggagctttacctcatccacaggaattcatgcatcacataggcctttacatggccaaaggaagaggagcaaaagtagtttcacatatctcatttgacacgacaaccaacgagacataactttgaacaatgagattaagatccatatttctcattcgaaactctgaaagacactgctacagctattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="30381" stop="32989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30675" g_stop="30823" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30824" i_stop="31716" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31717" g_stop="31900" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="333" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31980" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31981" g_stop="32114" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="467" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32115" i_stop="32202" i_length="88">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32203" g_stop="32388" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="653" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32389" i_stop="32524" i_length="136">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32525" g_stop="32689" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="818" r_length="165" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E697326" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30675" e_stop="30823"/>
          <exon e_start="31717" e_stop="31900"/>
          <exon e_start="31981" e_stop="32114"/>
          <exon e_start="32203" e_stop="32388"/>
          <exon e_start="32525" e_stop="32689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAGGTGAGCTGATAAGTATATACACATGCATTTGGGCTGTTAGCCATAAAAACTTGATCCTCAGATACTCTTCTTTTTCACGGGAACAAATCTCGAATGTCTTTTGACAATTTCACCATTCCCATCATTTGCTATGTAGGAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAGGACACTGCTACAGCTATTGC</genome_strand>
        <mrna_strand>CGTTAAGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGCCTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATT........................................................................................ATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAG........................................................................................................................................GAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAAGACACTGCTACAGCTATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708877" ref_strand="+" ref_description="SGN-E708877 [FA42AB01]">
      <seq>cctgtggcaagaggctgcgattgacttactgaagagtgagattccggcggaggaagatgaaccgctgcttctcaccggcgatgttaacaccggtctcgtactcgtcgacatcgttaatggcttctgcaccgtcggagctggcaatttggctccggtgacaccaaatagacaaatttcagcaatggttgatgagtcagttaaacttgcaaaagtgttctgtgagaagaaatggcctatttatgcacttcgtgattcgcatcatcctgatgtgcctgagccacctaatcctcctcattgtatcgctggaacagatgaatctgagttggttcctgcactgcagtggttggagaatgaacctaatgtgacagtgcgatgcaaggattgtattgatggtttccttggctcgattgagaaagatggatctaatgtctttgtaaattgggtgaaagctaatgagattaaaattatattggttgtagggatatgcacggacatatgcgtgcttgattttgtgtgttctgtcttatctgcacgaaaccgtggatttctctccccactgaaagacgtgattgtatattcccctggctgcgctacctatgatcttccagtccagattgccagaaatataaaaggagctttacctcatccacaggaattcatgcatcacataggcctttacatggccaaaggaagaggagcaaaagtagtttcacatatctcatttgacacgacaaccaacgagacataactttgaacaatgagattaagatccatatttctcattcgaaactctgaaggacactgctacagctattgcagacactgcttagtatatattaagttatagtagtaagataaatatgcccatatgcatcttctcttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="30378" stop="33058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30676" g_stop="30823" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30824" i_stop="31716" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31717" g_stop="31900" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="332" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31901" i_stop="31980" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31981" g_stop="32114" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="466" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32115" i_stop="32202" i_length="88">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.852" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32203" g_stop="32388" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="652" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32389" i_stop="32524" i_length="136">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32525" g_stop="32758" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="886" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E708877" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30676" e_stop="30823"/>
          <exon e_start="31717" e_stop="31900"/>
          <exon e_start="31981" e_stop="32114"/>
          <exon e_start="32203" e_stop="32388"/>
          <exon e_start="32525" e_stop="32758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTGGTAAATTTATAATCACAATCATTTAATTTAAGTTTTAAGTTCATATTGATGTGTATACTTTTCTGTATTTATAGGAAATAGACTGCACAAAAAAACAAATAACGAATTTAGACGAATCTGTATATTACATCCGTCGTATTCTGTTTGGATCGATCTATTTGTGAAGGAAATACTTCGAAATTCATAATTATATGATATATGTGGTCAATTTGCATGCATCTCGACTATGATCGGTATTCACCAAAGTGAAAACATTAAAAATTCATACTTTTCCTTCTCAACCAAAAAAAGAGGAAGAAGGAAATACTTTGAAATTCCTAGTTTAAGCATTTGGATATAAAAATTGTGAATTTTTTTTTTCAAAGTTGAAAATGGTGTATTTGGAAACTGGAGTTGTGTTTGTACATGTGTACAAATTGGAATTTTTTTTTATTTTTTGTTAGTGATTTTAAGCAAAAAAAAATATGTGAAAACTACCTTTTCGGAGTTTTCCAAATACTGGAAAATTCCAAAATTTATCTTAAAACAATTCTATATCCAAACAGTTTTTCGGAAATAAGTGAATATTATTTGCATACAAGTGTGCTTCGAAAAATCATCTTTGTTTTTCTTAATTCAATGTAATTTCTTGGGATTCAGGATTCACAGGGTAGATAATCTAGTGTGATAATCGAACCTTGCACTCCAGTAAGGAGCTTCATTCAATCTATGTTATCTTTTTTGAGTTGTTTTGTTCTCTCTCTCTTTCTATTAGTATGTTGTTCTAATGTTTGTTTTTCGACTATTTTTGTGACTATAGTGGATAACTCGTTAGTTTCGCTAAGCAATTCATGTGATTCTTATTCCTCATATATCAGTTAGATTGTGATTTTGTGCCATTTGTTTTGCTATAGGCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAGGTGAGCTGATAAGTATATACACATGCATTTGGGCTGTTAGCCATAAAAACTTGATCCTCAGATACTCTTCTTTTTCACGGGAACAAATCTCGAATGTCTTTTGACAATTTCACCATTCCCATCATTTGCTATGTAGGAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAGGACACTGCTACAGCTATTGCAGACACTGCTTAGTATATATTAAGTTATAGTAGTAAGATAAATATGCCCATATGCATCTTCTCTTGTTC</genome_strand>
        <mrna_strand>CCTGTGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATT........................................................................................ATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAG........................................................................................................................................GAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAGGACACTGCTACAGCTATTGCAGACACTGCTTAGTATATATTAAGTTATAGTAGTAAGATAAATATGCCCATATGCATCTTCTCTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483605" ref_strand="+" ref_description="SGN-E483605 [cSTE-10-K11]">
      <seq>tgcaaaagtgttctgtgagaagaaatggcctaattattgctcttcgtgattctcattcatcctgatgtgcctgaaccacctcatcctcctcattgtatcactggaacagatgaatctgagttggttcctgctctgcagtggttggaaaatgaaccaaatgtgacagtgcgatgcaaggattgtattgatgggttccttggatcgattgagaaagatggatctaatgtctttgtaaattgggtgaaagctaatgagattaaaactatattggttgtagggatatgcacggacgtatgcgtgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="31473" stop="32542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31773" g_stop="31900" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31901" i_stop="31980" i_length="80">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31981" g_stop="32114" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="264" r_length="134" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32115" i_stop="32202" i_length="88">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.852" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32203" g_stop="32242" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="304" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E483605" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31773" e_stop="31900"/>
          <exon e_start="31981" e_stop="32114"/>
          <exon e_start="32203" e_stop="32242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTA-TGCACTTCGTGATTCGCA-TCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATTGTAAGTATCGCCATATTTCATAATTTAATCAAAATTTGTTTCCATTCCAATTCTATCTGATGTTGTGAGTATCAATATGTTGGTTTAGATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTG</genome_strand>
        <mrna_strand>TGCAAAAGTGTTCTGTGAGAAGAAATGGCCTAATTATTGCTCTTCGTGATTCTCATTCATCCTGATGTGCCTGAACCACCTCATCCTCCTCATTGTATCACTGGAACAGATGAATCTGAGTTGGTTCCTG................................................................................CTCTGCAGTGGTTGGAAAATGAACCAAATGTGACAGTGCGATGCAAGGATTGTATTGATGGGTTCCTTGGATCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAACT........................................................................................ATATTGGTTGTAGGGATATGCACGGACGTATGCGTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238752" ref_strand="+" ref_description="SGN-E238752 [cLEL-9-J16](-)">
      <seq>cacaaatcaatgtcacctttaaactttaaaactgatcaacttctgttgttgtggggaaaacttgacatatcaagctgattttttagtgtaaatatagctaatgtgaatatgggagaagtagtatgctttttaactgctgctattgtaaataaatcatctgtcttccaatatccagacaagtgaaaacatcattgtttatatctttgatcatacattaatgttaaatattatgttcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="43707" stop="38091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43407" g_stop="43171" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43170" i_stop="42653" i_length="518">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.538" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42652" g_stop="42632" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="258" r_length="21" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E238752" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43407" e_stop="43171"/>
          <exon e_start="42652" e_stop="42632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTTATGAATCTATTCTGTTATGGTTCCCTCTGTCTTATTGTTCATTATTGTTTATTATGTATATATACTAGATGTTGATACCCCTTCATTTCTTCGTGGGTTCTGGCTCCTATGCTGACCAAGAACCCTCTATGTTTGTGGACCACCGCACATCGTTTGCTTCGTTAGTACACTATTGTAGAAGCTAGTGAAAATAGTCGTCATTTTTTCCTTTACTAGGAAGGTTATTCTTCTGTAAGCAAGATCTTTGATTAGTTTTTCTTTCTACAAGACTTATCTTAACTTGTCGAACTTTCTTTCCTTCACTAGGAAAGTTACTCCGTAAGCAAGATGTTTGATTACAATGAGTTACGAAAGACAAGTGGATTTGTTGATTGCTCAACTCAAAGCCAAGAAAACCCTAAAAAAGATGAATTTGGACCATTTGTGTTGTTGTATTGATTCAAAACCCCTTTTAAACACACATTGATTCCAACACTTGATGTTTTTGCAAGAATGGCATGTGACCATTGCTACTATAGGTTGAAAAGTGAAAAAAAAAA</genome_strand>
        <mrna_strand>CACAAATCAATGTCACCTTTAAACTTTAAAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746960" ref_strand="+" ref_description="SGN-E746960 [GI|47104322]">
      <seq>acttttgggggggtggggtgaagacgaaagaagggagttttagtgagagagagaaaaaggggttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaatttttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctgtttgcttttttgctcttttgatagaaaaagtttgtctttagccttccatctgatattttgttttagtaatggattaagcatttgttgaatttttgttctggggcttggatttgagttcttgattgtgtttcagagcttaaagtttgatttttttttgctaagtttgatcatttgtagaatcccttttggatgaaatggcagtttctttgactcgtttgtcatggtggtggtggggtgggaaagagaaggaaccagtgtctaatggatcttcaatgaatcccttgcaagattttggatttggattgaaggaacaaagtgatagtttgaagtttaagtcagtgaggggggctaatctagcttcaactactaggaaagtgaagaggaaatggaagagtagagaggagaggaagagggttgatgagaaatatgatgtggtattggtgccatctgatggtgtttgtttatcaggttccgaatccgatgactctgactggtcgatcgggtggctggaaccacatgcccctgatttccagaatgatgatgagggagatgacagttttgctgtgttggttccttgctacaggcatgattgtagagagataggagagccaaacaatcagtttttaagtgccattgagaatctctcaaatgggtatcctgctgagggtaagaagtatatggagcaatggctctcttctcttcagaatttttgaatatactgcagctggtcgttatctacgcattaggaattttctgaagcagggtctatcttttagtatttgaggagatatgctagttctgcatcaatatcgaaaagtagtggcagcaggtcagcattttcatttgcgagagacaaataatcaagtttttcgtggcagtgatctttggtttcgggctcaaatacacaaatcaatgtcatctttaaactttagaactgatcaacttctgttgttgtggggaaaacttgacatatcaagctgattttttagtgtaaatatagctaatgtgaatatgggagaagtagtatgctttttaactgctgctattgtaaataaatcatctgtcttccaatatccagacaagtgaaaacatcattgtttatatctttgatcatacattaatgttaaatattatgttcttatgaatctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="46548" stop="42862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46248" g_stop="45089" g_length="1160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1162" r_length="1162" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45088" i_stop="43648" i_length="1441">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43647" g_stop="43163" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1163" r_stop="1647" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1648" polyA_stop="1662"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E746960" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1645</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46248" e_stop="45089"/>
          <exon e_start="43647" e_stop="43163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAA-GGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAA-TTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATGGTGGTGGTGGGGTGGGAAAGAGAAGGAACCAGTGTCTAATGGATCTTCAATGAATCCCTTGCAAGATTTTGGATTTGGATTGAAGGAACAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAGGAAATGGAAGAGTAGAGAGGAGAGGAAGAGGGTTGATGAGAAATATGATGTGGTATTGGTGCCATCTGATGGTGTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCACATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCTTGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACAATCAGTTTTTAAGTGCCATTGAGAATCTCTCAAATGGGTATCCTGCTGGTAAGAGCTTTAGATATGTTCTTGTTGCTTTTGCTGCATTGATTATGTAGAATCTCTTTCGTTTGGATTATTGTTCTTTGATTACTATGATTTGAATTTGATTATGCTTGTTTGCAATTGCTCTGACAATAATGATTCCTCTGGAGCTGAATTTGTTAAATTAGTTATGTTTAATAATGTGTAGACTGAGAAAAAGATTCATGTGCGTTTGTCGTATTGTTATCCTTCGTTTTACCAAGCGTGTGGTAGCAAGCGTCACATTATGTTCTTGTTGCTTTTGCTGCATTGATTATGTAGAATATTGTTTTTTGGATAATTGTTCTTTGATAACTATGATTTGAATTTCATTATGCTTGTTTGCAACTGCTCTGACAATAATGACACCTCTGGAGCTGAATTTGTTAAATTAGTTATGTTTAATAATGTATAGACTGTGAAAAAGATTCATGTGAGTTTGTCGTATTGTTATCCTTCGTGTTACCAAGCGAGTGGCAACAAGCGTCGCATTATGTTCTTGTTGCTTTTGCTGCATTGATTATGTAGAATATCATTCTTTTGGATTATTGTTCTTTGATAACTATGATTTGAATTTCTTTATGCTTGTTTGCAACTGCTCTGACAATTATGACACCTCTGGAGCTGAATTTAACAATTAGTTATGTTTAGTAATGTGTAGACTGAGAAAAAGATTCATGTGAGTTTGTCGTATTGTTATCCTTCGTGTTACCAAGCGCGTGGTAACAAGCGTCGCATAATAGTGCTAAAAATAGAAGCCAGTCTCCCATCAGGACACAGATGGATAGAGTAATATCATTGGATTTAGATTTTAATAAGCAATAGTTGCATTGAAGGATAGATACTATTAATGGAGTAGAATTAATGAGCAATATTTACTGTTATCGTACTACAATCAGTGAACATTATTTACATATCCGTTGTTGTGTATTTTGAGCCGAGGGTGTTTCAGAAACAGCCTCTCTTCACAAGGTAGGGGTAACCTTGCGGACACTCTAGCCTCCTCAGACCCCACTTGTGGGATTTCTATGAGTATGGTGTTGTATTATTGTGCAATTTGACAATAAGAACCTCAATAAAATTTCATTCTAACCTAATGCAGTGAGTTCTACATACTCCATCTTGGTGATGTTATATCCTTTCAATCCAGCCTTTTGGTTCTTAAAGAAAGCTTAAACATTGATAGAGCAATGAACAAAGAACTGACTTTTCCTTTTATTTTGAATGCTATTGTTTCTTCCTGTATGAAGTTTCCAAACTTACGACTTGTATTTGCCTTGAACCAATTTAAAGCCTGCAGAATTTGTTATGAGTTCGTCTAGATAGGTTGGTTAATATGTATCATATCTATGCCAGTCTGTGTTGTCTCGTATTAGACGTACGAGTGAATGTGATCTTGTCTGAAATTCTTCTTTCATACTTGCAGAGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTTATGAATCT</genome_strand>
        <mrna_strand>ACTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAAGGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATGGTGGTGGTGGGGTGGGAAAGAGAAGGAACCAGTGTCTAATGGATCTTCAATGAATCCCTTGCAAGATTTTGGATTTGGATTGAAGGAACAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAGGAAATGGAAGAGTAGAGAGGAGAGGAAGAGGGTTGATGAGAAATATGATGTGGTATTGGTGCCATCTGATGGTGTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCACATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCTTGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACAATCAGTTTTTAAGTGCCATTGAGAATCTCTCAAATGGGTATCCTGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTTATGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704370" ref_strand="+" ref_description="SGN-E704370 [FA24AD09]">
      <seq>cgataaagtgatagtttgaagtttaagtcagtgaggggggctaatctagcttcaactactaggaaagtgaagaggaaatggaagagtagagaggagaggaagagggttgatgagaaatatgatgtggtattggtgccatctgatggtgtttgtttatcaggttccgaatccgatgactctgactggtcgatcgggtggctggaaccacatgcccctgatttccagaatgatgatgagggagatgacagttttgctgtgttggttccttgctacaggcatgattgtagagagataggagagccaaacaatcagtttttaagtgccattgagaatctctcaaatgggtatcctgctgagggtaagaagtatatggagcaatggctctcttctcttcagaatttttgaatatactgcagctggtcgttatctacgcattaggaattttctgaagcagggtctatcttttagtatttgaggagatatgctagttctgcatcaatatcgaaaagtagtggcagcaggtcagcattttcatttgcgagagacaaataatcaagtttttcgtggcagtgatctttggtttcgggctcaaatacacaaatcaatgtcatctttanactttagaactgatcaacttctgttgttgtggggaaaacttgacatatcaagctgattttttagtgtaaatatagctaatgtgaatatgggagaagtagtatgctttttaactgctgctattgtaaataaatcatctgtcttccaatatccagacaagtgaaaacatcattgtttatatctttgatcatacattaatggttaatattatgttcttatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="45741" stop="42866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45443" g_stop="45089" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45088" i_stop="43648" i_length="1441">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43647" g_stop="43167" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="836" r_length="481" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E704370" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45443" e_stop="45089"/>
          <exon e_start="43647" e_stop="43167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAGGAAATGGAAGAGTAGAGAGGAGAGGAAGAGGGTTGATGAGAAATATGATGTGGTATTGGTGCCATCTGATGGTGTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCACATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCTTGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACAATCAGTTTTTAAGTGCCATTGAGAATCTCTCAAATGGGTATCCTGCTGGTAAGAGCTTTAGATATGTTCTTGTTGCTTTTGCTGCATTGATTATGTAGAATCTCTTTCGTTTGGATTATTGTTCTTTGATTACTATGATTTGAATTTGATTATGCTTGTTTGCAATTGCTCTGACAATAATGATTCCTCTGGAGCTGAATTTGTTAAATTAGTTATGTTTAATAATGTGTAGACTGAGAAAAAGATTCATGTGCGTTTGTCGTATTGTTATCCTTCGTTTTACCAAGCGTGTGGTAGCAAGCGTCACATTATGTTCTTGTTGCTTTTGCTGCATTGATTATGTAGAATATTGTTTTTTGGATAATTGTTCTTTGATAACTATGATTTGAATTTCATTATGCTTGTTTGCAACTGCTCTGACAATAATGACACCTCTGGAGCTGAATTTGTTAAATTAGTTATGTTTAATAATGTATAGACTGTGAAAAAGATTCATGTGAGTTTGTCGTATTGTTATCCTTCGTGTTACCAAGCGAGTGGCAACAAGCGTCGCATTATGTTCTTGTTGCTTTTGCTGCATTGATTATGTAGAATATCATTCTTTTGGATTATTGTTCTTTGATAACTATGATTTGAATTTCTTTATGCTTGTTTGCAACTGCTCTGACAATTATGACACCTCTGGAGCTGAATTTAACAATTAGTTATGTTTAGTAATGTGTAGACTGAGAAAAAGATTCATGTGAGTTTGTCGTATTGTTATCCTTCGTGTTACCAAGCGCGTGGTAACAAGCGTCGCATAATAGTGCTAAAAATAGAAGCCAGTCTCCCATCAGGACACAGATGGATAGAGTAATATCATTGGATTTAGATTTTAATAAGCAATAGTTGCATTGAAGGATAGATACTATTAATGGAGTAGAATTAATGAGCAATATTTACTGTTATCGTACTACAATCAGTGAACATTATTTACATATCCGTTGTTGTGTATTTTGAGCCGAGGGTGTTTCAGAAACAGCCTCTCTTCACAAGGTAGGGGTAACCTTGCGGACACTCTAGCCTCCTCAGACCCCACTTGTGGGATTTCTATGAGTATGGTGTTGTATTATTGTGCAATTTGACAATAAGAACCTCAATAAAATTTCATTCTAACCTAATGCAGTGAGTTCTACATACTCCATCTTGGTGATGTTATATCCTTTCAATCCAGCCTTTTGGTTCTTAAAGAAAGCTTAAACATTGATAGAGCAATGAACAAAGAACTGACTTTTCCTTTTATTTTGAATGCTATTGTTTCTTCCTGTATGAAGTTTCCAAACTTACGACTTGTATTTGCCTTGAACCAATTTAAAGCCTGCAGAATTTGTTATGAGTTCGTCTAGATAGGTTGGTTAATATGTATCATATCTATGCCAGTCTGTGTTGTCTCGTATTAGACGTACGAGTGAATGTGATCTTGTCTGAAATTCTTCTTTCATACTTGCAGAGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTTATGA</genome_strand>
        <mrna_strand>CGATAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAGGAAATGGAAGAGTAGAGAGGAGAGGAAGAGGGTTGATGAGAAATATGATGTGGTATTGGTGCCATCTGATGGTGTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCACATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCTTGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACAATCAGTTTTTAAGTGCCATTGAGAATCTCTCAAATGGGTATCCTGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTANACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGGTTAATATTATGTTCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434548" ref_strand="+" ref_description="SGN-E434548 [STM-60-G23]">
      <seq>ttttttttttagcaagagtgagaacataatatttaacattaatgtataatcaagatataaacagtgatgtttcacttgtctggatactggaagacagatgatttatttacaatagcagcaggtaaaaagcatactacttctcccatattcacattagctatatttacactaacaaatcagcttgatatgtcaaagatgacaacagtttgtgtttttgagctcgtaaccaaagaccactgccacgataaacttgattatttgtctctcgcaaatgaaaatgctgacctgctgccactactattcaatattgatgaagaacttgcatatctcctcatatactaaaagatagaccctgcttcagaaaattcctaatgcgtagaaaacgaccagctgcagtatattcaaaaattctgaagagaagatagccattgctccatatacttcttaccctctgcaagtataaaaagaaattcagacaagatcacattcactcgtacgtctgatagagactacacagacaggcatagatatgatacgtagtaacctatctagaagaactcataacaaattctgcaggctttaaatcagtttaaggccaatacaagtcgtaagtttggaaacttcataggggaagaaacaatagcattcaaaggaaaaggaaaagtcagttctttgtccattgctctctccatgtttaagctttctttaagaacaaaaggctgaattgaaagggtataacatgaccaagatggagtatgtaggactcactgcattacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="42870" stop="44283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43174" g_stop="43346" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="193" r_length="171" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43347" i_stop="43396" i_length="50">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.56"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43397" g_stop="43980" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="776" r_length="583" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="10" polyA_stop="1"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E434548" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43174" e_stop="43346"/>
          <exon e_start="43397" e_stop="43980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATAATATTTAACATTAATGTATGATCAAAGATATAAACAATGATGTTTTCACTTGTCTGGATATTGGAAGACAGATGATTTATTTACAATAGCAGCAGTTAAAAAGCATACTACTTCTCCCATATTCACATTAGCTATATTTACACTAAAAAATCAGCTTGATATGTCAAGTTTTCCCCACAACAACAGAAGTTGATCAGTTCTAAAGTTTAAAGATGACA-TTG-----A-TTTGTGTATTTGAGCCCGAAACCAAAGATCACTGCCACGAAAAACTTGATTATTTGTCTCTCGCAAATGAAAATGCTGACCTGCTGCCACTACTTTTCGATATTGATGCAGAACTAGCATATCTCCTCAAATACTAAAAGATAGACCCTGCTTCAGAAAATTCCTAATGCGTAGATAACGACCAGCTGCAGTATATTCAAAAATTCTGAAGAGAAGAGAGCCATTGCTCCATATACTTCTTACCCTCTGCAAGTATGAAAGAAGAATTTCAGACAAGATCACATTCACTCGTACGTCTAATACGAGACAACACAGACTGGCATAGATATGATACATATTAACCAACCTATCTAGACGAACTCATAACAAATTCTGCAGGCTTTAAATTGGTTCAAGGCAAATACAAGTCGTAAGTTTGGAAACTTCATACAGGAAGAAACAATAGCATTCAAAATAAAAGGAAAAGTCAGTTCTTTGTTCATTGCTCTATCAATGTTTAAGCTTTCTTTAAGAACCAAAAGGCTGGATTGAAAGGATATAACATCACCAAGATGGAGTATGTAGAACTCACTGCATTAG</genome_strand>
        <mrna_strand>AACATAATATTTAACATTAATGTATAATC-AAGATATAAACAGTGATG-TTTCACTTGTCTGGATACTGGAAGACAGATGATTTATTTACAATAGCAGCAGGTAAAAAGCATACTACTTCTCCCATATTCACATTAGCTATATTTACACTAACAAATCAGCTTGATATGTCAA..................................................AGATGACAACAGTTTGTGTTTTTGAGCTCGTAACCAAAGACCACTGCCACGATAAACTTGATTATTTGTCTCTCGCAAATGAAAATGCTGACCTGCTGCCACTACTATTCAATATTGATGAAGAACTTGCATATCTCCTCATATACTAAAAGATAGACCCTGCTTCAGAAAATTCCTAATGCGTAGAAAACGACCAGCTGCAGTATATTCAAAAATTCTGAAGAGAAGATAGCCATTGCTCCATATACTTCTTACCCTCTGCAAGTAT-AAA-AAGAAATTCAGACAAGATCACATTCACTCGTACGTCTGATA-GAGACTACACAGACAGGCATAGATATGATACGTAGT----AACCTATCTAGAAGAACTCATAACAAATTCTGCAGGCTTTAAATCAGTTTAAGGCCAATACAAGTCGTAAGTTTGGAAACTTCATAGGGGAAGAAACAATAGCATTCAAAGGAAAAGGAAAAGTCAGTTCTTTGTCCATTGCTCTCTCCATGTTTAAGCTTTCTTTAAGAA-CAAAAGGCTGAATTGAAAGGGTATAACATGACCAAGATGGAGTATGTAGGACTCACTGCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221211" ref_strand="+" ref_description="SGN-E221211 [cLEL-22-N7](-)">
      <seq>ggcacgagctcttctcttcagaatttttgaatatactgcagctggtcgttatctacgcattaggaattttctgaagcagggtctatcttttagtatttgaggagatatgctagttctgcatcaatatcgaaaagtagtggcagcaggtcagcattttcatttgcgagagacaaataatcaagtttttcgtggcagtgatctttggtttcgggctcaaatacacaaatcaatgtcatctttaaactttagaactgatcaacttctgttgttgtggggaaaacttgacatatcaagctgattttttagtgtaaatatagctaatgtgaatatgggagaagtagtatgctttttaactgctgctattgtaaataaatcatctgtcttccaatatccagacaagtgaaaacatcattgtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="43919" stop="42908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43628" g_stop="43211" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="436"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E221211" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43628" e_stop="43211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTT</genome_strand>
        <mrna_strand>GGCACG-AGCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221317" ref_strand="+" ref_description="SGN-E221317 [cLEL-22-N7](-)">
      <seq>tttcaattgcaagagacaaataatcaagtttttcgtggcagtgatctttggattcgggctcaaatacacaaatcaatgtcatctttaaactttagaactgatcaacttctgttgttgtggggaaaacttgacatatcaagctgattttttagtgtaaatatagctaatgtgaatatgggagaagtagtatgctttttaactgctgctattgtaaataaatcatctgtcttccaatatccagacaagtgaaaacatcattgtttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="43773" stop="42908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43473" g_stop="43211" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="264" polyA_stop="282"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E221317" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43473" e_stop="43211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTT</genome_strand>
        <mrna_strand>TTTCAATTGCAAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGATTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598145" ref_strand="+" ref_description="SGN-E598145 [73813]">
      <seq>ctatgatgtggtattggtgccatctgatggtgtttgtttatcaggttccgaatccgatgactctgactggtcgatcgggtggctggaaccacatgcccctgatttccagaatgatgatgagggagatgacagttttgctgtgttggttccttgctacaggcatgattgtagagagataggagagccaaacaatcagtttttaagtgccattgagaatctttcaaatgagtatcctgctgagggtaagaagtatatggagcaatggctctcttctcttcagaatttttgaatatactgcagctggtcattttctgcgcattaggaattttctgaagcagggtctatcttttagtatatgaggaggtatgcaagttctgcatcaatattgaatagtagtggcagcaggtcagcattttcattttcgagagacaaataatcaagtttatcgtggcagtgatctttgtttccgggctcaaatacacaaaccgttgtcatctttaaactttagaactgatcaacttctgttggtggggggaaaattttgacatatcaagctgtttttttagtgtaaatatagctaatgtgaatatgggagaagtagtatgctttttaactgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="45626" stop="42967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45327" g_stop="45089" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45088" i_stop="43648" i_length="1441">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43647" g_stop="43267" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="621" r_length="382" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E598145" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45327" e_stop="45089"/>
          <exon e_start="43647" e_stop="43267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGATGTGGTATTGGTGCCATCTGATGGTGTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCACATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCTTGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACAATCAGTTTTTAAGTGCCATTGAGAATCTCTCAAATGGGTATCCTGCTGGTAAGAGCTTTAGATATGTTCTTGTTGCTTTTGCTGCATTGATTATGTAGAATCTCTTTCGTTTGGATTATTGTTCTTTGATTACTATGATTTGAATTTGATTATGCTTGTTTGCAATTGCTCTGACAATAATGATTCCTCTGGAGCTGAATTTGTTAAATTAGTTATGTTTAATAATGTGTAGACTGAGAAAAAGATTCATGTGCGTTTGTCGTATTGTTATCCTTCGTTTTACCAAGCGTGTGGTAGCAAGCGTCACATTATGTTCTTGTTGCTTTTGCTGCATTGATTATGTAGAATATTGTTTTTTGGATAATTGTTCTTTGATAACTATGATTTGAATTTCATTATGCTTGTTTGCAACTGCTCTGACAATAATGACACCTCTGGAGCTGAATTTGTTAAATTAGTTATGTTTAATAATGTATAGACTGTGAAAAAGATTCATGTGAGTTTGTCGTATTGTTATCCTTCGTGTTACCAAGCGAGTGGCAACAAGCGTCGCATTATGTTCTTGTTGCTTTTGCTGCATTGATTATGTAGAATATCATTCTTTTGGATTATTGTTCTTTGATAACTATGATTTGAATTTCTTTATGCTTGTTTGCAACTGCTCTGACAATTATGACACCTCTGGAGCTGAATTTAACAATTAGTTATGTTTAGTAATGTGTAGACTGAGAAAAAGATTCATGTGAGTTTGTCGTATTGTTATCCTTCGTGTTACCAAGCGCGTGGTAACAAGCGTCGCATAATAGTGCTAAAAATAGAAGCCAGTCTCCCATCAGGACACAGATGGATAGAGTAATATCATTGGATTTAGATTTTAATAAGCAATAGTTGCATTGAAGGATAGATACTATTAATGGAGTAGAATTAATGAGCAATATTTACTGTTATCGTACTACAATCAGTGAACATTATTTACATATCCGTTGTTGTGTATTTTGAGCCGAGGGTGTTTCAGAAACAGCCTCTCTTCACAAGGTAGGGGTAACCTTGCGGACACTCTAGCCTCCTCAGACCCCACTTGTGGGATTTCTATGAGTATGGTGTTGTATTATTGTGCAATTTGACAATAAGAACCTCAATAAAATTTCATTCTAACCTAATGCAGTGAGTTCTACATACTCCATCTTGGTGATGTTATATCCTTTCAATCCAGCCTTTTGGTTCTTAAAGAAAGCTTAAACATTGATAGAGCAATGAACAAAGAACTGACTTTTCCTTTTATTTTGAATGCTATTGTTTCTTCCTGTATGAAGTTTCCAAACTTACGACTTGTATTTGCCTTGAACCAATTTAAAGCCTGCAGAATTTGTTATGAGTTCGTCTAGATAGGTTGGTTAATATGTATCATATCTATGCCAGTCTGTGTTGTCTCGTATTAGACGTACGAGTGAATGTGATCTTGTCTGAAATTCTTCTTTCATACTTGCAGAGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACT-TGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCT</genome_strand>
        <mrna_strand>CTATGATGTGGTATTGGTGCCATCTGATGGTGTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCACATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCTTGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACAATCAGTTTTTAAGTGCCATTGAGAATCTTTCAAATGAGTATCCTGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCATTTTCTGCGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATATGAGGAGGTATGCAAGTTCTGCATCAATATTGAATAGTAGTGGCAGCAGGTCAGCATTTTCATTTTCGAGAGACAAATAATCAAGTTTATCGTGGCAGTGATCTTTGTTTCCGGGCTCAAATACACAAACCGTTGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGGTGGGGGGAAAATTTTGACATATCAAGCTGTTTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339406" ref_strand="+" ref_description="SGN-E339406 [cTOF-4-E18]">
      <seq>acacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctgtttgcttttttgctcttttgatagaaaaagtttgtctttagccttccatctgatattttgttttagtaatggattaagcatttgttgaatttttgttctggggcttggatttgagttcttgattgtgtttcagagcttaaagtttgatttttttttgctaagtttgatcatttgtagaatcccttttggatgaaatggcagtttctttgactcgttgtcatggntgggtggtgggggtgggaaaagagaaggaaccagtgtctaatggatcttcaatgaatcccttgcaagattttggatttggattgaaggaacaaagtgatagtttgaagtttaagtcagtgaggggggctaatctagcttcaactactaggaaagtgaagaagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="46354" stop="45064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46054" g_stop="45364" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E339406" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46054" e_stop="45364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATGG-T-GGTGGT-GGGGTGGG-AAAGAGAAGGAACCAGTGTCTAATGGATCTTCAATGAATCCCTTGCAAGATTTTGGATTTGGATTGAAGGAACAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAGGAAATG</genome_strand>
        <mrna_strand>ACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCG-TTGTCATGGNTGGGTGGTGGGGGTGGGAAAAGAGAAGGAACCAGTGTCTAATGGATCTTCAATGAATCCCTTGCAAGATTTTGGATTTGGATTGAAGGAACAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367430" ref_strand="+" ref_description="SGN-E367430 [cLPT-7-B18]">
      <seq>tttgttttagtaatggattaagcatttgttgaatttttgttctggggcttggatttgagttcttgattgcgtttcagagcttaaagtttgattttttttttgctaagtttgatcatttgtagaatcccttttggatgaaatggcagtttctttgactcgtttgtcatggtggtggtggggtgggaaagagaaggaaccagcgtctaatggatcttcaatgaatcccttgcaagattttggatttggattgaaagaacaaagtgatagtttgaagtttaagtcactgaggggggctaatctagcttctactactacgaaaggttagaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="45995" stop="45066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45695" g_stop="45366" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E367430" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45695" e_stop="45366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGA-TTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATGGTGGTGGTGGGGTGGGAAAGAGAAGGAACCAGTGTCTAATGGATCTTCAATGAATCCCTTGCAAGATTTTGGATTTGGATTGAAGGAACAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAGGAAA</genome_strand>
        <mrna_strand>TTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGCGTTTCAGAGCTTAAAGTTTGATTTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATGGTGGTGGTGGGGTGGGAAAGAGAAGGAACCAGCGTCTAATGGATCTTCAATGAATCCCTTGCAAGATTTTGGATTTGGATTGAAAGAACAAAGTGATAGTTTGAAGTTTAAGTCACTGAGGGGGGCTAATCTAGCTTCTACTACTACGAAAGGTTAGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334701" ref_strand="+" ref_description="SGN-E334701 [cTOD-23-H14]">
      <seq>ttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaattttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctgtttgcttttttgctcttttgatagaaaaagtttgtctttagccttccatctgatattttgttttagtaatggattaagcatttgttgaatttttgttctggggcttggatttgagttcttgattgtgtttcagagcttaaagtttgatttttttttgctaagtttgatcatttgtagaatcccttttggatgaaatggcagtttctttgactcgtttgtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="46487" stop="45229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46187" g_stop="45529" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E334701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46187" e_stop="45529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATG</genome_strand>
        <mrna_strand>TTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410223" ref_strand="+" ref_description="SGN-E410223 [PPI-16-K24]">
      <seq>gaaagaagggagttttagtgagagaaagaaaaaggggttcaccggcggtgacggaaaacggatatgccggtgaaaagttttgttattttccggtgatattactgtgctgatctcactttccggcgagaatttgagaattttccggtggtgtcaccgtttgatatatatatatacacatctgccgaaagcttatcctttttctttactgagaaacaggtccgggtttgggtctgacccgattgggaaaaatggtttttttagtgttttaattccaattttgccctcatcaatcatgagtttgagataaacaaacttgatttaaattttgtggatttatcatattgttagaccatttgaagtgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtgggggtttgaattttgaagcttttcttgagaaggggttgttttttgatgattaaactgcttaaagctgtttgcttttttgctcttttgatagaaaagttgaatcttttgtcttccatctgatattttgttttagtaatggattaaacatttgttgaatttttgttctggggcttggagttgagttcttgattgtgtttcagagcttaaagtttgaatttttttgctaagtttgatcatttgtagaatcccttttggatgaaatggcagtttctttgactcgttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="46523" stop="45232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46223" g_stop="45532" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E410223" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46223" e_stop="45532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAA-GGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTG--ATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATT-GGAGAAATGG--TTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAA-AAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTC</genome_strand>
        <mrna_strand>GAAAGAAGGGAGTTTTAGTGAGAGAAAGAAAAAGGGGTTCACCGGCGGTGACGGAAAACGGATATGCCGGTGAAAAGTTTTGTTATTTTCCGGTGATATTACTGTGCTGATCTCACTTTCCGGCGAGAATTTGAGAATTTTCCGGTGGTGTCACCGTTTGATATATATATATACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAGGTCCGGGTTTGGGTCTGACCCGATTGGGAAAAATGGTTTTTTTAGTGTTTTAATTCCAATTTTGCCCTCATCAATCATGAGTTTGAGATAAACAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGA-CCATTTGAAGTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGGTTTGAATTTTGAAGCTTTTCTTGAGAAGGGGTTGTTTTTTGATGATTAAACTGCTTAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAGTTGAATCTTTTGTCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAACATTTGTTGAATTTTTGTTCTGGGGCTTGGAGTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGA-ATTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCG-TTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434547" ref_strand="+" ref_description="SGN-E434547 [STM-60-G23]">
      <seq>gaaagaagggagttttagtgagagaaagaaaaaggggttcaccggcggtgacggaaaacggatatgccggtgaaaagttttgttattttccggtgatattactgtgctgatctcactttccggcgagaatttgagaattttccggtggtgtcaccgtttgatatatatatatacacatctgccgaaagcttatcctttttctttactgagaaacaggtccgggtttgggtctgacccgattgggaaaaatggtttttttagtgttttaattccaattttgccctcatcaatcatgagtttgagataaacaaacttgatttaaattttgtggatttatcatattgttagaccatttgaagtgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtgggggtttgaattttgaagcttttcttgagaaggggttgttttttgatgattaaactgcttaaagctgtttgcttttttgctcttttgatagaaaagttgaatcttttgtcttccatctgatattttgttttagtaatggattaaacatttgttgaatttttgttctggggcttggagttgagttcttgattgtgtttcagagcttaaagtttgaatttttttgctaagtttgatcatttgtagaatcccttttggatgaaatggcagtttctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="46523" stop="45242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46223" g_stop="45542" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E434547" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46223" e_stop="45542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAA-GGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTG--ATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATT-GGAGAAATGG--TTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAA-AAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGA</genome_strand>
        <mrna_strand>GAAAGAAGGGAGTTTTAGTGAGAGAAAGAAAAAGGGGTTCACCGGCGGTGACGGAAAACGGATATGCCGGTGAAAAGTTTTGTTATTTTCCGGTGATATTACTGTGCTGATCTCACTTTCCGGCGAGAATTTGAGAATTTTCCGGTGGTGTCACCGTTTGATATATATATATACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAGGTCCGGGTTTGGGTCTGACCCGATTGGGAAAAATGGTTTTTTTAGTGTTTTAATTCCAATTTTGCCCTCATCAATCATGAGTTTGAGATAAACAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGA-CCATTTGAAGTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGGTTTGAATTTTGAAGCTTTTCTTGAGAAGGGGTTGTTTTTTGATGATTAAACTGCTTAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAGTTGAATCTTTTGTCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAACATTTGTTGAATTTTTGTTCTGGGGCTTGGAGTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGA-ATTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347146" ref_strand="+" ref_description="SGN-E347146 [cTOF-25-K19]">
      <seq>tgtgtgttacttttgggggggtggggtgaagacgaaagaagggagttttagtgagagagagaaaaaggggttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaattttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctgtttgcttttttgctcttttgatagaaaaagtttgtctttagccttccatctgatattttgttttagtaatggattaagcatttgttgaatttttgttctggggcttggatttgagttcttgattgtgtttcagagcttaaagtttgnattttttttgctaagtttgatcatttgtagaatcccttttggatgaaatggcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="46556" stop="45249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46256" g_stop="45549" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E347146" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46256" e_stop="45549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGTTACTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAAGG-GTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTT</genome_strand>
        <mrna_strand>TGTGTGTTACTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAAGGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGNATTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337212" ref_strand="+" ref_description="SGN-E337212 [cTOE-7-K5]">
      <seq>agagagagaaaaaggggttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaattttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctgtttgcttttttgctcttttgatagaaaaagtttgtctttaaccttccatctgatattttgttttagtaatggattaagcatttgttgaatttttgttctggggcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="46503" stop="45343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46203" g_stop="45643" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E337212" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46203" e_stop="45643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAAAAAGGG-TTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGA</genome_strand>
        <mrna_strand>AGAGAGAGAAAAAGGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAACCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306174" ref_strand="+" ref_description="SGN-E306174 [cLEY-13-K17]">
      <seq>agagagacaaaggggttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaattttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctgtttgcttttttgctcttttgatagaaaaagtttgtctttagccttccatctgatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="46501" stop="45393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46203" g_stop="45693" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E306174" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46203" e_stop="45693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAAAAAGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTT</genome_strand>
        <mrna_strand>AGAGAGA-CAAAGGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272984" ref_strand="+" ref_description="SGN-E272984 [cLEM-25-E18]">
      <seq>agaaaaaggggttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaattttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttantgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgattaaactgctgaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="46497" stop="45452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46199" g_stop="45752" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E272984" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46199" e_stop="45752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAAGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTG</genome_strand>
        <mrna_strand>AGA-AAAAGGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTANTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299916" ref_strand="+" ref_description="SGN-E299916 [cLEW-1-P10]">
      <seq>cttttgggggggtggggtgaagacgaaagaagggagttttagtgagagagagaaaaaggggttcaccgccggtggcggaaaatggatatgccggtgaacagttttgtttttttccggtgatattaccgtgctgatctcactttccggcgaggatttgagaatttttccggtggtgacaccgtttgatatatatacacacatctgccgaaagcttatcctttttctttactgagaaacaaattcgggtctgggtttgacccgattggagaaatggtttttggtgttttaattccaattttgccctcatcaatcacgagtttgagatgaaaaacttgatttaaattttgtggatttatcatattgttagacccttttgaactgtttgatgttttctgggatttttagttgaattttagtgctaggagatggtggggttttaatttttgaagcttttcttgaaaaggggttgtttttttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="46547" stop="45469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46247" g_stop="45769" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E299916" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46247" e_stop="45769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAA-GGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAA-TTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGAT</genome_strand>
        <mrna_strand>CTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAAGGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412272" ref_strand="+" ref_description="SGN-E412272 [STM-16-C11]">
      <seq>cacctccataactttttttcccttgtttttacaaagcatcatacatacggcgtcgttttgaaggtttcttcctttctctgtattccggtaggcaagatatttttcaagagaagtagaggttgaggggggaatcatcactatccttgttttgtaattaggaagactctttgatcaatgtggagtagtttagttatcttatgctgctagtgatagttggttgtttgcttagctttgtccaataatggctgctgcgggttctttgcagttgtcccattatttggggacttgcaagaaccatgagcgccttaagaaatattcacctatacagaacacacttggaaggagcaggtggcattcttgttgcacgaatctgtcatctttttcatcgcggcaggactcttggagtatccatcacttaagaggattgcaagtgaagaaacatgtgctcccatatagaagcaatttgttcaagtgtaattctttcctaaaacctgaccaagcttttgacatttctgtaaagaatgctgctattatactgaaaagatcataccatagcttacaaggaagcccacatctgctttaagtgcttccggcaattggaatccttacttttgcagtttggggtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="59713" stop="62453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60013" g_stop="60107" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60108" i_stop="60414" i_length="307">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60415" g_stop="60646" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="328" r_length="232" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60647" i_stop="61026" i_length="380">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61027" g_stop="61086" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="388" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61087" i_stop="61463" i_length="377">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61464" g_stop="61618" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="543" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61619" i_stop="62067" i_length="449">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62068" g_stop="62153" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="629" r_length="86" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E412272" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60013" e_stop="60107"/>
          <exon e_start="60415" e_stop="60646"/>
          <exon e_start="61027" e_stop="61086"/>
          <exon e_start="61464" e_stop="61618"/>
          <exon e_start="62068" e_stop="62153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCCATAA-TTTTTTTACCTTGTTCGTGCAAACCATCACACATACGATGTCGTTTTGAAGGTTTCTTCCTTTCTCTGTATTCCGTTAGACAAGGTTAGTTTCATCATCTTCATCTTCTTGGTAGTTTCCTGTATGTATTTTATTATTATTTTGAAAGTTGAGTTTTTTGGTTCAATGGCTTCAAATTGTCAATTTTCTGTATTTCTTTTTTCAGTTTTTATTGGAAATGGATTAGTAGAAATTTGAATTCTGTGAAAAAAGAAAATACCCATGTAAAAAGATTTGATTTTTCATTCAAATTCCAATTCTGGAGGCTGATTTTTAGGGTAGAATTAAGACTAGGGTTATATTAATGACTTAATTTCAATTCTGATGATGTTTTCGATTATGGGTTTTGCAGGTTTTTTTCAAGAGAAGTAGAGGTTGAGGGGGGAATCATCACTATCCTTGTTTTTGTAATTAGGAAGACT-TTTGATCAATGTGGAGTAGTTTAATTATCTTATGCTGCTAGTGATAGTTGGTTGTTTGCTTAGCTTTGTCCAATAATGGTTGCTGCTGGTTCTTTGCAGTTGTCCCATTATTGGGGGACTTGCAAGAACCATGAGCGCCTTAAGAAATATTCGCCTATACAGGTACCTGTTCGACTTGGTTATATGTTTTATTTACATCACTAGTTCTTCTTTCTATATTGAGTGAAGGGTTGAAAACACGCCAAAATTATCCGTTTTTTCGAGTTTCATACTCTGAACTATCATCAATTATTTATCAAAACATACATCTGTTGTTCCGTTTTCCTATCATTCGAATGATGGTGATATTTCGTGTAGGAAAAGGGATCAAGTGATAGTTGAGGTGTATTTTGATAAATAGTTGATGAAAGTTCAGGTAGATAGGAAACTCACATACGTGGTAGTTCAAGTATGAAACTTGAATAAAAAGAGATACTTTATGTGTGTTTTTGACCATTAACTCTTCCATTATATTTGGTTTAATTCCACTTGCTTCCTTATAGAACACACTTGGAAGGAACAGGTGGCGTTCTTGTTGCACGAATCTGTCATCTTTTTCATCAGTAAGTACTTCTGATTGCAAGTGGATGACTTCTTTGGATTCCGGGAAAAATTGGTGTAAATTGAACAATTTAAATGAGAAATGGAGTCCTCGCTCCTCATAAGGTCTAAAAAGGGAAGGAAAAAAAGGAGAAGAAGAAAAGTCTAGAGGAAAAAAAGGGAAGAAAGAAGAGAATACTCCAACAGAAAAATAAGGTGGCAATCTTGTAGTAAAAGAATTAGCTCAACGGGTATTATTTCTTAGGATAGTGTAATCTATGCAAATAGGGTGCTTGCGCTTTTTCCTTGTGTATATTCTCTGTCATTCAGTTGTGGTAATGTATTTGGCTTCAGAAATTTGTTTTAACTCACTAAATTTTCTGTTATGTTACATTTTCAGCGGCAGGACTCTTGGAGCATCCATCACTCAAGAGGATTGCAAGTGAAGAAACATGTGCTCCCATATAGAAGCAATTTGTTGAAGTGTAATTCTTTCCTAAAACCTGACCAAGCTTTTGACATTTCTGTAAAGAATGCTGCTATTATACTGAAAAGGTAATTCTTGTTTGTGTTCAATAAGAGAAGACTATGCGTGTATTGTATGAATAGATCTGTGTAAAAATGAACAAATTGGAAATTCAAGATTAGATGACGATGATAGTTTTGAACAATGCTTGAATTAGGAGGGTAGCTATAGTATCTCAATAGAGATTGTTAAGAAACTAAGTTAAAGCAGCTATCTACACTGTGTGGCGGAACCCTTTAATTTTTTTAGATCTAATATATTGAGTTGAGTTTAGGTGTCTTGTAATGATTTACTAACCATAGTAAATAGGATGAGGTCTACCTGCTTATTTTGAGGAGAAAGCAATAGTTTCTTTATAGCACAACTTGTATGCACATACTTTTGTACCAGCGGCCAGATTTCACTTCTTTACCTGTTTAACGTAGGTTATATTGTTTCCTCGTAATTTAATTAAGAAGATTATTGTTGATTCATGCAGATCATACAATAGCTTACAAGGAAGCCCACATCTGCTTAAGTTGCTTCCCGGAATTGGAATCCTTACTTTTGCAGTTTGGGGTCTTG</genome_strand>
        <mrna_strand>CACCTCCATAACTTTTTTTCCCTTGTTTTTACAAAGCATCATACATACGGCGTCGTTTTGAAGGTTTCTTCCTTTCTCTGTATTCCGGTAGGCAAG...................................................................................................................................................................................................................................................................................................................ATATTTTTCAAGAGAAGTAGAGGTTGAGGGGGGAATCATCACTATCCTTG-TTTTGTAATTAGGAAGACTCTTTGATCAATGTGGAGTAGTTTAGTTATCTTATGCTGCTAGTGATAGTTGGTTGTTTGCTTAGCTTTGTCCAATAATGGCTGCTGCGGGTTCTTTGCAGTTGTCCCATTATTTGGGGACTTGCAAGAACCATGAGCGCCTTAAGAAATATTCACCTATACAG............................................................................................................................................................................................................................................................................................................................................................................................AACACACTTGGAAGGAGCAGGTGGCATTCTTGTTGCACGAATCTGTCATCTTTTTCATCG.........................................................................................................................................................................................................................................................................................................................................................................................CGGCAGGACTCTTGGAGTATCCATCACTTAAGAGGATTGCAAGTGAAGAAACATGTGCTCCCATATAGAAGCAATTTGTTCAAGTGTAATTCTTTCCTAAAACCTGACCAAGCTTTTGACATTTCTGTAAAGAATGCTGCTATTATACTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATACCATAGCTTACAAGGAAGCCCACATCTGCTTTAAGTGCTTCCGGCAATTGGAATCCTTACTTTTGCAGTTTGGGGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470328" ref_strand="+" ref_description="SGN-E470328 [cSTB-17-F18]">
      <seq>cacctccataactttttttcccttgtttttacaaagcatcatacatacggcgtcgttttgaaggtttcttcctttctctgtattccggtaggcaagatatttttcaagagaagtagaggttgaggggggaatcatcactatccttgttttgtaattaggaagactctttgatcaatgtggagtagtttagttatcttatgctgctagtgatagttggttgtttgcttagctttgtccaataatggctgctgcgggttctttgcagttgtcccattatttggggacttgcaagaaccatgagcgccttaagaaatattcacctatacagaacacacttggaaggagcaggtggcattcttgttgcacgaatctgtcatctttttcatcgcggcaggactcttggagtatccatcacttaagaggattgcaagtgaagaaacatgtgctcccatatagaagcaatttgttcaagtgtaattctttcctaaaacctgaccaagcttttgacatttctgtaaagaatgctgctattatactgaaaagatcatacaatagcttacaaggaagcccacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="59713" stop="62399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60013" g_stop="60107" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60108" i_stop="60414" i_length="307">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60415" g_stop="60646" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="328" r_length="232" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60647" i_stop="61026" i_length="380">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.955" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61027" g_stop="61086" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="388" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61087" i_stop="61463" i_length="377">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61464" g_stop="61618" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="543" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61619" i_stop="62067" i_length="449">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62068" g_stop="62099" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="575" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E470328" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60013" e_stop="60107"/>
          <exon e_start="60415" e_stop="60646"/>
          <exon e_start="61027" e_stop="61086"/>
          <exon e_start="61464" e_stop="61618"/>
          <exon e_start="62068" e_stop="62099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCCATAA-TTTTTTTACCTTGTTCGTGCAAACCATCACACATACGATGTCGTTTTGAAGGTTTCTTCCTTTCTCTGTATTCCGTTAGACAAGGTTAGTTTCATCATCTTCATCTTCTTGGTAGTTTCCTGTATGTATTTTATTATTATTTTGAAAGTTGAGTTTTTTGGTTCAATGGCTTCAAATTGTCAATTTTCTGTATTTCTTTTTTCAGTTTTTATTGGAAATGGATTAGTAGAAATTTGAATTCTGTGAAAAAAGAAAATACCCATGTAAAAAGATTTGATTTTTCATTCAAATTCCAATTCTGGAGGCTGATTTTTAGGGTAGAATTAAGACTAGGGTTATATTAATGACTTAATTTCAATTCTGATGATGTTTTCGATTATGGGTTTTGCAGGTTTTTTTCAAGAGAAGTAGAGGTTGAGGGGGGAATCATCACTATCCTTGTTTTTGTAATTAGGAAGACT-TTTGATCAATGTGGAGTAGTTTAATTATCTTATGCTGCTAGTGATAGTTGGTTGTTTGCTTAGCTTTGTCCAATAATGGTTGCTGCTGGTTCTTTGCAGTTGTCCCATTATTGGGGGACTTGCAAGAACCATGAGCGCCTTAAGAAATATTCGCCTATACAGGTACCTGTTCGACTTGGTTATATGTTTTATTTACATCACTAGTTCTTCTTTCTATATTGAGTGAAGGGTTGAAAACACGCCAAAATTATCCGTTTTTTCGAGTTTCATACTCTGAACTATCATCAATTATTTATCAAAACATACATCTGTTGTTCCGTTTTCCTATCATTCGAATGATGGTGATATTTCGTGTAGGAAAAGGGATCAAGTGATAGTTGAGGTGTATTTTGATAAATAGTTGATGAAAGTTCAGGTAGATAGGAAACTCACATACGTGGTAGTTCAAGTATGAAACTTGAATAAAAAGAGATACTTTATGTGTGTTTTTGACCATTAACTCTTCCATTATATTTGGTTTAATTCCACTTGCTTCCTTATAGAACACACTTGGAAGGAACAGGTGGCGTTCTTGTTGCACGAATCTGTCATCTTTTTCATCAGTAAGTACTTCTGATTGCAAGTGGATGACTTCTTTGGATTCCGGGAAAAATTGGTGTAAATTGAACAATTTAAATGAGAAATGGAGTCCTCGCTCCTCATAAGGTCTAAAAAGGGAAGGAAAAAAAGGAGAAGAAGAAAAGTCTAGAGGAAAAAAAGGGAAGAAAGAAGAGAATACTCCAACAGAAAAATAAGGTGGCAATCTTGTAGTAAAAGAATTAGCTCAACGGGTATTATTTCTTAGGATAGTGTAATCTATGCAAATAGGGTGCTTGCGCTTTTTCCTTGTGTATATTCTCTGTCATTCAGTTGTGGTAATGTATTTGGCTTCAGAAATTTGTTTTAACTCACTAAATTTTCTGTTATGTTACATTTTCAGCGGCAGGACTCTTGGAGCATCCATCACTCAAGAGGATTGCAAGTGAAGAAACATGTGCTCCCATATAGAAGCAATTTGTTGAAGTGTAATTCTTTCCTAAAACCTGACCAAGCTTTTGACATTTCTGTAAAGAATGCTGCTATTATACTGAAAAGGTAATTCTTGTTTGTGTTCAATAAGAGAAGACTATGCGTGTATTGTATGAATAGATCTGTGTAAAAATGAACAAATTGGAAATTCAAGATTAGATGACGATGATAGTTTTGAACAATGCTTGAATTAGGAGGGTAGCTATAGTATCTCAATAGAGATTGTTAAGAAACTAAGTTAAAGCAGCTATCTACACTGTGTGGCGGAACCCTTTAATTTTTTTAGATCTAATATATTGAGTTGAGTTTAGGTGTCTTGTAATGATTTACTAACCATAGTAAATAGGATGAGGTCTACCTGCTTATTTTGAGGAGAAAGCAATAGTTTCTTTATAGCACAACTTGTATGCACATACTTTTGTACCAGCGGCCAGATTTCACTTCTTTACCTGTTTAACGTAGGTTATATTGTTTCCTCGTAATTTAATTAAGAAGATTATTGTTGATTCATGCAGATCATACAATAGCTTACAAGGAAGCCCACATC</genome_strand>
        <mrna_strand>CACCTCCATAACTTTTTTTCCCTTGTTTTTACAAAGCATCATACATACGGCGTCGTTTTGAAGGTTTCTTCCTTTCTCTGTATTCCGGTAGGCAAG...................................................................................................................................................................................................................................................................................................................ATATTTTTCAAGAGAAGTAGAGGTTGAGGGGGGAATCATCACTATCCTTG-TTTTGTAATTAGGAAGACTCTTTGATCAATGTGGAGTAGTTTAGTTATCTTATGCTGCTAGTGATAGTTGGTTGTTTGCTTAGCTTTGTCCAATAATGGCTGCTGCGGGTTCTTTGCAGTTGTCCCATTATTTGGGGACTTGCAAGAACCATGAGCGCCTTAAGAAATATTCACCTATACAG............................................................................................................................................................................................................................................................................................................................................................................................AACACACTTGGAAGGAGCAGGTGGCATTCTTGTTGCACGAATCTGTCATCTTTTTCATCG.........................................................................................................................................................................................................................................................................................................................................................................................CGGCAGGACTCTTGGAGTATCCATCACTTAAGAGGATTGCAAGTGAAGAAACATGTGCTCCCATATAGAAGCAATTTGTTCAAGTGTAATTCTTTCCTAAAACCTGACCAAGCTTTTGACATTTCTGTAAAGAATGCTGCTATTATACTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATACAATAGCTTACAAGGAAGCCCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283306" ref_strand="+" ref_description="SGN-E283306 [cLER-12-L13]">
      <seq>tttaccttgtttgtgcaaaccatcacacatacgatgtcgttttgaaggtttcttcctttctctgtattccgttagacaaggtttttttcaagagaagtagaggttgaggggggaatcatcactatccttgtttttgtaattaggaagacttttgatcaatgtggagtagtttaattatcttatgctgctagtgatagttggttgtttgcttagctttgtccaataatggttgctgctggttctttgcagttgtcccattattgggggacttgcaagaaccatgagcgccttaagaaatattcgcctatacagaacacacttggaaggaacaggtggcgttcttgttgcacaaatctgtcatctttttcatcacggcaggactcttggagtatccatcactcaagaggattgcaagtgaagaaacatgtgctcccatatagaagcaatttgttgaagtgtaattctttcctaaaacctgaccaagcttttgacatttctgtaaagaatgctgctattatactgaaaagatcatacaatagcttacaaggaagcccacatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="59728" stop="62402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60028" g_stop="60107" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60108" i_stop="60414" i_length="307">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60415" g_stop="60646" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="312" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60647" i_stop="61026" i_length="380">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61027" g_stop="61086" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="372" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61087" i_stop="61463" i_length="377">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61464" g_stop="61618" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="527" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61619" i_stop="62067" i_length="449">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62068" g_stop="62102" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="562" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E283306" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60028" e_stop="60107"/>
          <exon e_start="60415" e_stop="60646"/>
          <exon e_start="61027" e_stop="61086"/>
          <exon e_start="61464" e_stop="61618"/>
          <exon e_start="62068" e_stop="62102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCTTGTTCGTGCAAACCATCACACATACGATGTCGTTTTGAAGGTTTCTTCCTTTCTCTGTATTCCGTTAGACAAGGTTAGTTTCATCATCTTCATCTTCTTGGTAGTTTCCTGTATGTATTTTATTATTATTTTGAAAGTTGAGTTTTTTGGTTCAATGGCTTCAAATTGTCAATTTTCTGTATTTCTTTTTTCAGTTTTTATTGGAAATGGATTAGTAGAAATTTGAATTCTGTGAAAAAAGAAAATACCCATGTAAAAAGATTTGATTTTTCATTCAAATTCCAATTCTGGAGGCTGATTTTTAGGGTAGAATTAAGACTAGGGTTATATTAATGACTTAATTTCAATTCTGATGATGTTTTCGATTATGGGTTTTGCAGGTTTTTTTCAAGAGAAGTAGAGGTTGAGGGGGGAATCATCACTATCCTTGTTTTTGTAATTAGGAAGACTTTTGATCAATGTGGAGTAGTTTAATTATCTTATGCTGCTAGTGATAGTTGGTTGTTTGCTTAGCTTTGTCCAATAATGGTTGCTGCTGGTTCTTTGCAGTTGTCCCATTATTGGGGGACTTGCAAGAACCATGAGCGCCTTAAGAAATATTCGCCTATACAGGTACCTGTTCGACTTGGTTATATGTTTTATTTACATCACTAGTTCTTCTTTCTATATTGAGTGAAGGGTTGAAAACACGCCAAAATTATCCGTTTTTTCGAGTTTCATACTCTGAACTATCATCAATTATTTATCAAAACATACATCTGTTGTTCCGTTTTCCTATCATTCGAATGATGGTGATATTTCGTGTAGGAAAAGGGATCAAGTGATAGTTGAGGTGTATTTTGATAAATAGTTGATGAAAGTTCAGGTAGATAGGAAACTCACATACGTGGTAGTTCAAGTATGAAACTTGAATAAAAAGAGATACTTTATGTGTGTTTTTGACCATTAACTCTTCCATTATATTTGGTTTAATTCCACTTGCTTCCTTATAGAACACACTTGGAAGGAACAGGTGGCGTTCTTGTTGCACGAATCTGTCATCTTTTTCATCAGTAAGTACTTCTGATTGCAAGTGGATGACTTCTTTGGATTCCGGGAAAAATTGGTGTAAATTGAACAATTTAAATGAGAAATGGAGTCCTCGCTCCTCATAAGGTCTAAAAAGGGAAGGAAAAAAAGGAGAAGAAGAAAAGTCTAGAGGAAAAAAAGGGAAGAAAGAAGAGAATACTCCAACAGAAAAATAAGGTGGCAATCTTGTAGTAAAAGAATTAGCTCAACGGGTATTATTTCTTAGGATAGTGTAATCTATGCAAATAGGGTGCTTGCGCTTTTTCCTTGTGTATATTCTCTGTCATTCAGTTGTGGTAATGTATTTGGCTTCAGAAATTTGTTTTAACTCACTAAATTTTCTGTTATGTTACATTTTCAGCGGCAGGACTCTTGGAGCATCCATCACTCAAGAGGATTGCAAGTGAAGAAACATGTGCTCCCATATAGAAGCAATTTGTTGAAGTGTAATTCTTTCCTAAAACCTGACCAAGCTTTTGACATTTCTGTAAAGAATGCTGCTATTATACTGAAAAGGTAATTCTTGTTTGTGTTCAATAAGAGAAGACTATGCGTGTATTGTATGAATAGATCTGTGTAAAAATGAACAAATTGGAAATTCAAGATTAGATGACGATGATAGTTTTGAACAATGCTTGAATTAGGAGGGTAGCTATAGTATCTCAATAGAGATTGTTAAGAAACTAAGTTAAAGCAGCTATCTACACTGTGTGGCGGAACCCTTTAATTTTTTTAGATCTAATATATTGAGTTGAGTTTAGGTGTCTTGTAATGATTTACTAACCATAGTAAATAGGATGAGGTCTACCTGCTTATTTTGAGGAGAAAGCAATAGTTTCTTTATAGCACAACTTGTATGCACATACTTTTGTACCAGCGGCCAGATTTCACTTCTTTACCTGTTTAACGTAGGTTATATTGTTTCCTCGTAATTTAATTAAGAAGATTATTGTTGATTCATGCAGATCATACAATAGCTTACAAGGAAGCCCACATCTGC</genome_strand>
        <mrna_strand>TTTACCTTGTTTGTGCAAACCATCACACATACGATGTCGTTTTGAAGGTTTCTTCCTTTCTCTGTATTCCGTTAGACAAG...................................................................................................................................................................................................................................................................................................................GTTTTTTTCAAGAGAAGTAGAGGTTGAGGGGGGAATCATCACTATCCTTGTTTTTGTAATTAGGAAGACTTTTGATCAATGTGGAGTAGTTTAATTATCTTATGCTGCTAGTGATAGTTGGTTGTTTGCTTAGCTTTGTCCAATAATGGTTGCTGCTGGTTCTTTGCAGTTGTCCCATTATTGGGGGACTTGCAAGAACCATGAGCGCCTTAAGAAATATTCGCCTATACAG............................................................................................................................................................................................................................................................................................................................................................................................AACACACTTGGAAGGAACAGGTGGCGTTCTTGTTGCACAAATCTGTCATCTTTTTCATCA.........................................................................................................................................................................................................................................................................................................................................................................................CGGCAGGACTCTTGGAGTATCCATCACTCAAGAGGATTGCAAGTGAAGAAACATGTGCTCCCATATAGAAGCAATTTGTTGAAGTGTAATTCTTTCCTAAAACCTGACCAAGCTTTTGACATTTCTGTAAAGAATGCTGCTATTATACTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATACAATAGCTTACAAGGAAGCCCACATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257956" ref_strand="+" ref_description="SGN-E257956 [cLEG-48-I16]">
      <seq>ttggatgtcagtaagataaataatattgtagctgacatgcgcaaagttttggcaaagaatccccaagttgagcaacagaggttacatagaagagtgttcctggagaatgtcaaccctgaaaatcaagctctgttgatcttaatatcctgctttgtcaagacatcacacttcgaggaatacttgtgtgtcaaggaagcaattttgttagatcttctcagagtcattcgacatcaccgagctcggcttgctactcccatccgtacagttcagaaaatatatagtgatgctgacttggacaacatgacatatgattctgccttcagtcgtggagcagcatcaactcgtccgttgctactgattgagccatcttataaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="64403" stop="67129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64703" g_stop="64723" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64724" i_stop="64811" i_length="88">
            <donor d_prob="0.217" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64812" g_stop="64925" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="135" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64926" i_stop="65823" i_length="898">
            <donor d_prob="0.686" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65824" g_stop="65880" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="192" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65881" i_stop="66644" i_length="764">
            <donor d_prob="0.627" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66645" g_stop="66829" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="377" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E257956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64703" e_stop="64723"/>
          <exon e_start="64812" e_stop="64925"/>
          <exon e_start="65824" e_stop="65880"/>
          <exon e_start="66645" e_stop="66829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGTCAGTAAGATAAATGTGAGCATTACTTCACTCGCGTAGCCAAGAAAATACAGCAAAATAAGTTATACTACTGATGTTTGATCTTACCATGACTTTTCTGTAGAATATTGTAGCTGACATGCGCAAAGTTTTGGCAAAGAATCCCCAAGTTGAGCAACAGAGGTTACATAGAAGAGTGTTCCTGGAGAATGTCAACCCTGAAAATCAAGCTCTGTTGGTTAGTGTCATTGTTTGATTATTAATATCTTGTGACTTTTGGATGGATCGTCATTATCAGTGTAAAGGTTGCTTTAGTTACATGCTTTCCTAACCAGTATGTTTCGAAAATTATCTTGGGTGCTTTTACTTCTCTCGGGCGTAAGAGTGTCTGGTGTGCTTGCAATTTTCTAGATCTGGAGTACCCAGAGTTATTTCATAAATTGTGGCTGCTGCTTTGGTTGCCCCCAGATATAATGGGCTAGAATTGTATCTTAATTGAAGTTGGTAGACTCTTTTAACAAAGAATTAGGGTTGTCTTCCAAACTAATCAATTGAATTGCAGTTCCCGAGCAGGACGTATAGAAAGAAGCAAACTATGTAAACTCAAGGCACACTACCTTGTGCCCATTTACTGAAGATTTGTGCTTCGTGAGTATCAGTGAGACCATTATATTAGTTCACCTCGTGATCTATTTACCTTGAGAACTGGTACTTAAAGCAAGTAAATCAAGAAGTACCACTCTCCTTCTTTGATTCAAGGTAGCGTAAAGTATAACCAGAACACAGTATGTGAATATTATCTAAGTTCATTATGTAATGGCAGTATATCAAATTGACTGATGATCTTTCCATTTGCTCATGGTCCAGTTGAACCTAGTCCACCCTGCTTGCCTGCTTTCAATCTGTTATTACTTGGGGTTATGGCTAACCATCCATTTAGCGTACTCTGTATGTCAGGGAAACAATTGTTGTCATGTGTGTGTTTGTTTGTACGGTTTGGCAAGTGAGAGACTCAGAAATTCTCGAAATGCTCCTCAACATGTTTTTCTGTCTCACATGAAAAGTTGCTTGACATTCTTGAAATTCTATCCGCCGGTTTATATACTCTTGTAAATATCTGCTTCATTATTGTGCAGATCTTAATATCCTGCTTTGTCAAGACATCACACTTCGAGGAATACTTGTGTGTCAAGGTGAGTGAAGATGCTGCTACAAATCCTATATGAAGAGTTTCTGTAATCCACAATATTTTGTAAAACAATAAAATGTTCTATCCTCAATTTGAAGCCCACTGATTTCTGTAACTGTAGTATTAATCCTGGCAATGGTAGGAAATTGTCGATAAAATGTTTCTTTCAAAATTCCCATGTATATATGCAAATGTAGTTGATTGTTCCTTGCCGAAGTTCACTTCTCTCCGAACCCTCCCATCACTCACTCCCCAAAAATCAAGTAATTGAAAAGCCACAGTTCTGTAGGTGCCAGTGACAAAATTATTTGTTGGAACTAATGATCTAGTCCAATGAGATGTGCTCTTTTCTATATTCTGCCTGGCTTATGAACAATAGGCAATAAGTTTACTTTATCCAGAAAAGAGTGGAAAAAGAAGGCAATGATTTCTCTGTCTTCTGAGAGGCTTGACACTTGAATGTAGCTAGCTATAAGTAATTTTTCGGCTTCTGAAGGTTGCTTCATCAGATGATTCTTCTGCGTATTACGAATAATCTGCTCATGAAATACGTAGCGATTTGCTGTTTCAAATGTCTGTTTAACAAGAGATGGTTGAAATATGGAATTTGTTAACTGAGATGGAAGTTGACACCTACCTCTTTAATGGTCATTTAGTTTCAGGAAGGATACTTCTCATTTGCTATTGCTAGTCGGTTTTGGTTCCATTTCATTTGGAGATCGACAACTTTGTGTTTTGACTTTTTCTTTTTTTCTTGGATGATATTAGGAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGT</genome_strand>
        <mrna_strand>TTGGATGTCAGTAAGATAAAT........................................................................................AATATTGTAGCTGACATGCGCAAAGTTTTGGCAAAGAATCCCCAAGTTGAGCAACAGAGGTTACATAGAAGAGTGTTCCTGGAGAATGTCAACCCTGAAAATCAAGCTCTGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAATATCCTGCTTTGTCAAGACATCACACTTCGAGGAATACTTGTGTGTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606862" ref_strand="+" ref_description="SGN-E606862 [22815]">
      <seq>gttacatagaagagtattcctggagaatgtcaaccctggaaaatcaagccctgattgatcttaatatcctgctttgtcaagacatcacactttgaagaatacttgtgtgtcaaggaagctattttgttagatcttctcagagtcattcgacatcaccgagctcggcttgccactcccatccgtactgttcagaaaatatatagtgatgctgacttggacaacatgccatatgactctgccttcagtcgtggagcagcatcaactcgtccgttgctactgattgagccatcttataaagtcaatggggaagatcgcacaaaaggtcgaccaattcgtgtgaatggtgaagaagacaccaaggaaaagtctaccatgaaaccggcacctgacagcaaggttgaaaccaagagcggacctgcatctgatcctaaaatcaaagaaacacttccagctaactctaatggtaaggatgtgccaatttctgacctgaaacttgatcccaaagttgacaaaatggcaaatgctgaatccaaagatgacatcaaagcatcggatccaaaaccgagtaaagcaacagtgaaaaacacttcaaaaccggtcccaaaagctgagctaaagtctgcagaagttggtacttctgattccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="64571" stop="67480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64871" g_stop="64925" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64926" i_stop="65823" i_length="898">
            <donor d_prob="0.686" d_score="0.88"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65824" g_stop="65880" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="114" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65881" i_stop="66644" i_length="764">
            <donor d_prob="0.627" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66645" g_stop="67180" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="647" r_length="533" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E606862" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64871" e_stop="64925"/>
          <exon e_start="65824" e_stop="65880"/>
          <exon e_start="66645" e_stop="67180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACATAGAAGAGTGTTCCTGGAGAATGTCAACCCT-GAAAATCAAGCTCTG-TTGGTTAGTGTCATTGTTTGATTATTAATATCTTGTGACTTTTGGATGGATCGTCATTATCAGTGTAAAGGTTGCTTTAGTTACATGCTTTCCTAACCAGTATGTTTCGAAAATTATCTTGGGTGCTTTTACTTCTCTCGGGCGTAAGAGTGTCTGGTGTGCTTGCAATTTTCTAGATCTGGAGTACCCAGAGTTATTTCATAAATTGTGGCTGCTGCTTTGGTTGCCCCCAGATATAATGGGCTAGAATTGTATCTTAATTGAAGTTGGTAGACTCTTTTAACAAAGAATTAGGGTTGTCTTCCAAACTAATCAATTGAATTGCAGTTCCCGAGCAGGACGTATAGAAAGAAGCAAACTATGTAAACTCAAGGCACACTACCTTGTGCCCATTTACTGAAGATTTGTGCTTCGTGAGTATCAGTGAGACCATTATATTAGTTCACCTCGTGATCTATTTACCTTGAGAACTGGTACTTAAAGCAAGTAAATCAAGAAGTACCACTCTCCTTCTTTGATTCAAGGTAGCGTAAAGTATAACCAGAACACAGTATGTGAATATTATCTAAGTTCATTATGTAATGGCAGTATATCAAATTGACTGATGATCTTTCCATTTGCTCATGGTCCAGTTGAACCTAGTCCACCCTGCTTGCCTGCTTTCAATCTGTTATTACTTGGGGTTATGGCTAACCATCCATTTAGCGTACTCTGTATGTCAGGGAAACAATTGTTGTCATGTGTGTGTTTGTTTGTACGGTTTGGCAAGTGAGAGACTCAGAAATTCTCGAAATGCTCCTCAACATGTTTTTCTGTCTCACATGAAAAGTTGCTTGACATTCTTGAAATTCTATCCGCCGGTTTATATACTCTTGTAAATATCTGCTTCATTATTGTGCAGATCTTAATATCCTGCTTTGTCAAGACATCACACTTCGAGGAATACTTGTGTGTCAAGGTGAGTGAAGATGCTGCTACAAATCCTATATGAAGAGTTTCTGTAATCCACAATATTTTGTAAAACAATAAAATGTTCTATCCTCAATTTGAAGCCCACTGATTTCTGTAACTGTAGTATTAATCCTGGCAATGGTAGGAAATTGTCGATAAAATGTTTCTTTCAAAATTCCCATGTATATATGCAAATGTAGTTGATTGTTCCTTGCCGAAGTTCACTTCTCTCCGAACCCTCCCATCACTCACTCCCCAAAAATCAAGTAATTGAAAAGCCACAGTTCTGTAGGTGCCAGTGACAAAATTATTTGTTGGAACTAATGATCTAGTCCAATGAGATGTGCTCTTTTCTATATTCTGCCTGGCTTATGAACAATAGGCAATAAGTTTACTTTATCCAGAAAAGAGTGGAAAAAGAAGGCAATGATTTCTCTGTCTTCTGAGAGGCTTGACACTTGAATGTAGCTAGCTATAAGTAATTTTTCGGCTTCTGAAGGTTGCTTCATCAGATGATTCTTCTGCGTATTACGAATAATCTGCTCATGAAATACGTAGCGATTTGCTGTTTCAAATGTCTGTTTAACAAGAGATGGTTGAAATATGGAATTTGTTAACTGAGATGGAAGTTGACACCTACCTCTTTAATGGTCATTTAGTTTCAGGAAGGATACTTCTCATTTGCTATTGCTAGTCGGTTTTGGTTCCATTTCATTTGGAGATCGACAACTTTGTGTTTTGACTTTTTCTTTTTTTCTTGGATGATATTAGGAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAA</genome_strand>
        <mrna_strand>GTTACATAGAAGAGTATTCCTGGAGAATGTCAACCCTGGAAAATCAAGCCCTGATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAATATCCTGCTTTGTCAAGACATCACACTTTGAAGAATACTTGTGTGTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCCACTCCCATCCGTACTGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGCCATATGACTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGTGTGAATGGTGAAGAAGACACCAAGGAAAAGTCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCGGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCAATTTCTGACCTGAAACTTGATCCCAAAGTTGACAAAATGGCAAATGCTGAATCCAAAGATGACATCAAAGCATCG---GATCCAAAACCGAGTAAAGCAACAGTGAAAAACACTTCAAAACCGGTCCCAAAAGCTGAGCTAAAGTCTGCAGAAGTTGGTACTTCTGATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616618" ref_strand="-" ref_description="SGN-E616618 [90086]">
      <seq>gtttcagccttaagaagtttgtttcccctgatggaagattaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatattttcgtttccgcctcccctggaaatatgcacaatgcaatggtgggacacagaacatacaacaatatgaagacaataaggccaaacatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatataaatctttattattatttgtttggtcatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtaggggtaatatatatttgtgtgtcaccacgttgagatttacggtaggtgtggaaggaatatgttgtacaatatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatattttactatgtaatgtcagttcttgtagtttaatcagaagggtggtttgtttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70135" stop="38089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69835" g_stop="69659" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68911" g_stop="68402" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="685" r_length="508" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68401" i_stop="66643" i_length="1759">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.65"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66642" g_stop="66600" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="728" r_length="43" r_score="0.651"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E616618" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616618" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69835" e_stop="69659"/>
          <exon e_start="68911" e_stop="68402"/>
          <exon e_start="66642" e_stop="66600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTAC-A-ATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTAGTTCTGTTTTTCTATATTCAAACTCGAAAACTCCCTTTGACTTGCTAGTTAAGGGTTCTTTGTTACTATAATATAGAGACCGCTAGTTAAGGATGAAATGCGATACAGTTGGCAAGATCTGAATATGTGCCTTTCACCTCATTGAAAGTTTAGAAGCCTTGGATACAAAGTAGGAATCTGGATCTTTTATTAATGATGTCAAGAACAAATTCCTTGGACATATATTGATTGTTAATCACTGAAAGTAGGAATCTGGATCTTTTATTAATGATGTCAAGAACAAATTCCTTGGACATATATTGATTGTTAATCACTGTTCAAATTTGATAGATTCGTTCTCGAAAACAAGAAGTTTGTTGACTATCTCTGGTAGGATCATTGATTAGATATAGATCACACAAATGGCAAATACATGAATGTGTGCGTCTTCTGTAAACCAGCATGACTGAGAAAAATGACAATTCCTATAGAAGTGCCCAACCAGGCCAATAACCAAAAAAACATGCTACTGGAGGATCAAACTGGACACATGACAATAGCACATACATAAACTAACATGATTAACTCCTATAAGTTGACCAATTTTATACTAGAGTGATAGGCTAAATACTTCACTATCCTGGAAATCAAGACAACTCTTTTCAATGGACCATGTAACATCAAATCTGGTGTTGACAATGAATTAGTGTCACATGAACTGTTAGTGAAAACATAGGTGGATCAATTGTCTTTACTCGACTGATCGGGAGCTGTAGAATTAGGTCTGTTTGAACGCTGCCCGTCTTGTTTATCTTTCTCTGCAATGGTAGAAGCATTACTACTACTACGGCTAGTAGCCATTTCCTTCGATTCTGCTGGATTTGGTGGGGGAGACAGCTCTTCTTCAATTGGAAGGGTTCTTTTTGAACCCTCGAGAGCAACACCAAGAACAATGTTCTCTTCCAATGCAGGTTTCGATGGCACAGATGGTTGTGAGACTTGTTGTTTTTCATCTTCTCTCTTAGGTAGTGAAGTAGATGGGACATTTCCTGTTTTCTCTCTAACATCTGATGGAGAAGTTGCGGAATTATCAACTACATTTGTCGTGCGACCAATCCCCTGGCTTACCTTCTCAACTTGCTTGTTGCTAGAGATGTTCTCTGGAGGATCTTTGGAATCAGAAGTACCAACTTCTGCAGACTTAAGCTCAGCTTTTGGGACCGGTTGTGAAGTGTTTTTCACTGTTGCTTTACTCGATTTTGGATCAGACGATGCTTTAATGTCATCTTTGGATTCAGCATGTGCCATTTTGTCAACTTTGGGATCAAGTTTCAAGTCAGAAAGTGGCACATCCTTACCATTAGAGTTAGCTGGAAGTGTTTCTTTGATTTTAGGATCAGATGCAGGTCTGCTCTTGGTTTCAACCTTGCTGTCAGGTGCCGGTTTCATGGTAGCCTTTTCCTTGGTATCTTCTTCACCATTCACGCGAATTGGTCGACCTTTTGTGCGATCTTCCCCATTGACTTTATAAGATGGCTCAATCAGTAGCAACGGACGAGTTGATGCTGCTCCACGACTGAAGGCAGAATCATATGTCATGTTGTCCAAGTCAGCATCACTATATATTTTCTGAACTGTACGGATGGGAGTAGCAAGCCGAGCTCGGTGATGTCGAATGACTCTGAGAAGATCTAACAAAATTGCTTCCTAATATCATCCAAGAAAAAAAGAAAAAGTCAAAACACAAAGTTG</genome_strand>
        <mrna_strand>GTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATTAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTCGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACACAGAACATACAACAATATGAAGACAATAAGGCCAAACATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAAATCTTTATTATTATTTGTTTGGTCATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTA-GGGGTAATATATATTTGTGTGTCACCACGTTGAGA-TTTACGGTAGGTGTGGAAGGAATATGTTGTACAATATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAG--ATATTTTACTATGTAATGTCAGTTCTTGTAGTTTAATCAGAAGGGTGGTTTGTTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370222" ref_strand="+" ref_description="SGN-E370222 [TUS-28-C24](-)">
      <seq>tcccctgaaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgaaagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataaaatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattttagtcttgacaaatatattttactatgtaatgtcagtttttgtagtttattcaaaagggtggtttgtttcatttggttgatgtagcagaggttgataatattatcaaatggcagctagtggaattgatttccaaaaaaaaaaaaaaacccaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="69985" stop="16740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69685" g_stop="69659" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68911" g_stop="68342" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="597" r_length="570" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68341" i_stop="67891" i_length="451">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67890" g_stop="67871" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="617" r_length="20" r_score="0.550"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67870" i_stop="66630" i_length="1241">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66629" g_stop="66606" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="641" r_length="24" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E370222" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69685" e_stop="69659"/>
          <exon e_start="68911" e_stop="68342"/>
          <exon e_start="67890" e_stop="67871"/>
          <exon e_start="66629" e_stop="66606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTAGTTCTGTTTTTCTATATTCAAACTCGAAAACTCCCTTTGACTTGCTAGTTAAGGGTTCTTTGTTACTATAATATAGAGACCGCTAGTTAAGGATGAAATGCGATACAGTTGGCAAGATCTGAATATGTGCCTTTCACCTCATTGAAAGTTTAGAAGCCTTGGATACAAAGTAGGAATCTGGATCTTTTATTAATGATGTCAAGAACAAATTCCTTGGACATATATTGATTGTTAATCACTGAAAGTAGGAATCTGGATCTTTTATTAATGATGTCAAGAACAAATTCCTTGGACATATATTGATTGTTAATCACTGTTCAAATTTGATAGATTCGTTCTCGAAAACAAGAAGTTTGTTGACTATCTCTGGTAGGATCATTGATTAGATATAGATCACACAAATGGCAAATACATGAATGTGTGCGTCTTCTGTAAACCAGCATGACTGAGAAAAATGACAATTCCTATAGAAGTGCCCAACCAGGCCAATAACCAAAAAAACATGCTACTGGAGGATCAAACTGGACACATGACAATAGCACATACATAAACTAACATGATTAACTCCTATAAGTTGACCAATTTTATACTAGAGTGATAGGCTAAATACTTCACTATCCTGGAAATCAAGACAACTCTTTTCAATGGACCATGTAACATCAAATCTGGTGTTGACAATGAATTAGTGTCACATGAACTGTTAGTGAAAACATAGGTGGATCAATTGTCTTTACTCGACTGATCGGGAGCTGTAGAATTAGGTCTGTTTGAACGCTGCCCGTCTTGTTTATCTTTCTCTGCAATGGTAGAAGCATTACTACTACTACGGCTAGTAGCCATTTCCTTCGATTCTGCTGGATTTGGTGGGGGAGACAGCTCTTCTTCAATTGGAAGGGTTCTTTTTGAACCCTCGAGAGCAACACCAAGAACAATGTTCTCTTCCAATGCAGGTTTCGATGGCACAGATGGTTGTGAGACTTGTTGTTTTTCATCTTCTCTCTTAGGTAGTGAAGTAGATGGGACATTTCCTGTTTTCTCTCTAACATCTGATGGAGAAGTTGCGGAATTATCAACTACATTTGTCGTGCGACCAATCCCCTGGCTTACCTTCTCAACTTGCTTGTTGCTAGAGATGTTCTCTGGAGGATCTTTGGAATCAGAAGTACCAACTTCTGCAGACTTAAGCTCAGCTTTTGGGACCGGTTGTGAAGTGTTTTTCACTGTTGCTTTACTCGATTTTGGATCAGACGATGCTTTAATGTCATCTTTGGATTCAGCATGTGCCATTTTGTCAACTTTGGGATCAAGTTTCAAGTCAGAAAGTGGCACATCCTTACCATTAGAGTTAGCTGGAAGTGTTTCTTTGATTTTAGGATCAGATGCAGGTCTGCTCTTGGTTTCAACCTTGCTGTCAGGTGCCGGTTTCATGGTAGCCTTTTCCTTGGTATCTTCTTCACCATTCACGCGAATTGGTCGACCTTTTGTGCGATCTTCCCCATTGACTTTATAAGATGGCTCAATCAGTAGCAACGGACGAGTTGATGCTGCTCCACGACTGAAGGCAGAATCATATGTCATGTTGTCCAAGTCAGCATCACTATATATTTTCTGAACTGTACGGATGGGAGTAGCAAGCCGAGCTCGGTGATGTCGAATGACTCTGAGAAGATCTAACAAAATTGCTTCCTAATATCATCCAAGAAAAAAAGAAAAAGTCAAAACACA</genome_strand>
        <mrna_strand>TCCCCTGAAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAAAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAAATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTTTAGTCTTGACAAATATATTTTACTATGTAATGTCAGTTTTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAACCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739235" ref_strand="+" ref_description="SGN-E739235 [LC16CE07]">
      <seq>catgaagcaattttgttagatcttctcagagtcattcgacatcaccgagctcggcttgctactcccatccgtacagttcagaaaatatatagtgatgctgacttggacaacatgacatatgattctgccttcagtcgtggagcagcatcaactcgtccgttgctactgattgagccatcttataaagtcaatggggaagatcgcacaaaaggtcgaccaattcgcgtgaatggtgaagaagataccaaggaaaaggctaccatgaaaccggcacctgacagcaaggttgaaaccaagagcagacctgcatctgatcctaaaatcaaagaaacacttccagctaactctaatggtaaggatgtgccactttctgacttgaaacttgatcccaaagttgacaaaatggcacatgctgaatccaaagatgacattaaagcatcgtctgatccaaaatcgagtaaagcaacagtgaaaaacacttcacaaccggtcccaaaagctgagcttaagtctgcagaagttggtacttctgattccaaagatcctccagagaacatctctagcaacaagcaagttgagaaggtaagccaggggattggtcgcacgacaaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcactacctaagagagaagatgaaaaacaacaagtctcacaaccatctgtgccatcgaaacctgcattggaagagaacattgttcttggtgttgctctcgagggttcaaaaagaacccttccaattgaaaaagagctgtctcccccaccaaatccagcagaatcgaaagaaatggctactagccgtagtagtagtaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="66343" stop="67819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66645" g_stop="67519" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="878" r_length="875" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E739235" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66645" e_stop="67519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGC</genome_strand>
        <mrna_strand>GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAAAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAAGAAATGGCTACTAGCCGTAGTAGTAGTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740866" ref_strand="+" ref_description="SGN-E740866 [LC23AH09]">
      <seq>ccgatgaagcaattttgttagatcttctcagagtcattcgacatcaccgagctcggcttgctactcccatccgtacagttcagaaaatatatagtgatgctgacttggacaacatgacatatgattctgccttcagtcgtggagcagcatcaactcgtccgttgctactgattgagccatcttataaagtcaatggggaagatcgcacaaaaggtcgaccaattcgcgtgaatggtgaagaagataccaaggaaaaggctaccatgaaaccggcacctgacagcaaggttgaaaccaagagcagacctgcatctgatcctaaaatcaaagaaacacttccagctaactctaatggtaaggatgtgccactttctgacttgaaacttgatcccaaagttgacaaaatggcacatgctgaatccaaagatgacattaaagcatcgtctgatccaaaatcgagtaaagcaacagtgaaaaacacttcacaaccggtcccaaaagctgagcttaagtctgcagaagttggtacttctgattccaaagatcctccagagaacatctctagcaacaagcaagttgagaaggtaagccaggggattggtcgcacgacaaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcactacctaagagagaagatgaaaaacaacaagtctcacaaccatctgtgccatcgaaacctgcattggaagagaacattgttcttggtgttgctctcgagggttcaaaaagaacccttccaattgaagaagagctgtctcccccaccaaatccagcagaatcgaaggaaatggctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="66343" stop="67799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66645" g_stop="67499" g_length="855"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="860" r_length="855" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E740866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66645" e_stop="67499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACT</genome_strand>
        <mrna_strand>GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736320" ref_strand="+" ref_description="SGN-E736320 [LC05AH05]">
      <seq>aatgaagcaattttgttagatcttctcagagtcattcgacatcaccgagctcggcttgctactcccatccgtacagttcagaaaatatatagtgatgctgacttggacaacatgacatatgattctgccttcagtcgtggagcagcatcaactcgtccgttgctactgattgagccatcttataaagtcaatggggaagatcgcacaaaaggtcgaccaattcgcgtgaatggtgaagaagataccaaggaaaaggctaccatgaaaccggcacctgacagcaaggttgaaaccaagagcagacctgcatctgatcctaaaatcaaagaaacacttccagctaactctaatggtaaggatgtgccactttctgacttgaaacttgatcccaaagttgacaaaatggcacatgctgaatccaaagatgacattaaagcatcgtctgatccaaaatcgagtaaagcaacagtgaaaaacacttcacaaccggtcccaaaagctgagcttaagtctgcagaagttggtacttctgattccaaagatcctccagagaacatctctagcaacaagcaagttgagaaggtaagccaggggattggtcgcacgacaaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcactacctaagagagaagatgaaaaacaacaagtctcacaaccatctgtgccatcgaaacctgcattggaagagaacattgttcttggtgttgctctcgagggttcaaaaagaacccttccaattgaagaagagctgtctcccccaccaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="66343" stop="67773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66645" g_stop="67473" g_length="829"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="832" r_length="829" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E736320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66645" e_stop="67473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATC</genome_strand>
        <mrna_strand>GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389928" ref_strand="+" ref_description="SGN-E389928 [TUS-4-N16]">
      <seq>aatatatagtgatgctgacttggacaacatgacatatgattctgccttcagtcgtggagcagcatcaactcgtccgttgctactgattgagccatcttataaagtcaatggggaagatcgcacaaaaggtcgaccaattcgcgtgaatggtgaagaagataccaaggaaaaggctaccatgaaaccggcacctgacagcaaggttgaaaccaagagcagacctgcatctgatcctaaaatcaaagaaacacttccagctaactctaatggtaaggatgtgccactttctgacttgaaacttgatcccaaagttgacaaaatggcacatgctgaatccaaagatgacattaaagcatcgtctgatccaaaatcgagtaaagcaacagtgaaaaacacttcacaaccggtcccaaaagctgagcttaagtctgcagaagttggtacttctgattccaaagatcctccagagaacatctctagcaacaagcaagttgagaaggtaagccaggggattggtcgcacgacaaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcactacctaagagagaagatgaaaaacaacaagtctcacaaccatctgtgccatcgaaacctgcattggaaagagacattgttcttggtgttgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="66425" stop="67717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66725" g_stop="67417" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E389928" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66725" e_stop="67417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCT</genome_strand>
        <mrna_strand>AATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAAGAGACATTGTTCTTGGTGTTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233749" ref_strand="+" ref_description="SGN-E233749 [cLED-14-M19]">
      <seq>atatatagtgatgctgacttggacaacatgacatatgattctgccttcagtcgtggagcagcatcaactcgtccgttgctactgattgagccatcttataaagtcaatggggaagatcgcacaaaaggtcgaccaattcgcgtgaatggtgaagaagataccaaggaaaaggctaccatgaaaccggcacctgacagcaaggttgaaaccaagagcagacctgcatctgatcctaaaatcaaagaaacacttccagctaactctaatggtaaggatgtgccactttctgacttgaaacttgatcccaaagttgacaaaatggcacatgctgaatccaaagatgacattaaagcatcgtctgatccaaaatcgagtaaagcaacagtgaaaaacacttcacaaccggtcccaaaagctgagcttaagtctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="66426" stop="67456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66726" g_stop="67156" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E233749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66726" e_stop="67156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGC</genome_strand>
        <mrna_strand>ATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699517" ref_strand="+" ref_description="SGN-E699517 [FA10BE06]">
      <seq>ccttgaatggtgaagaagataccaaggaaaaggctaccatgaaaccggcacctgacagcaaggttgaaaccaagagcagacctgcatctgatcctaaaatcaaagaaacacttccagctaactctaatggtaaggatgtgccactttctgacttgaaacttgatcccaaagttgacaaaatggcacatgctgaatccaaagatgacattaaagcatcgtctgatccaaaatcgagtaaagcaacagtgaaaaacacttcacaaccggtcccaaaagctgagcttaagtctgcagaagttggtacttctgattccaaagatcctccagagaacatctctagcaacaagcaagttgagaaggtaagccaggggattggtcgcacgacaaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcactacctaagagagaagatgaaaaacaacaagtctcacaaccatctgtgccatcgaaacctgcattggaagagaacattgttcttggtgttgctctcgagggttcaaaaagaacccttccaattgaagaagagctgtctcccccaccaaatccagcagaatcgaaggaaatggctactagccgtagtagtagtaatgcttctaccattgcagagaaagataaacaagacgggcagcgttcaaacagacctaattctacagctcccgatcagtcgagtaaagacaattgatccacctatgttttcactaacagttcatgtgacactaattcattgtcaacaccagatttgatgttacatggtccattgaaaagagttgtcttgatttccaggatagtgaagtatttaccctatccctctagtataaaattggtcaacttatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="66566" stop="68063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66865" g_stop="67763" g_length="899"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="899" r_length="899" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E699517" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66865" e_stop="67763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGGCAGCGTTCAAACAGACCTAATTCTACAGCTCCCGATCAGTCGAGTAAAGACAATTGATCCACCTATGTTTTCACTAACAGTTCATGTGACACTAATTCATTGTCAACACCAGATTTGATGTTACATGGTCCATTGAAAAGAGTTGTCTTGATTTCCAGGATAGTGAAGTATTTAGCCTATCACTCTAGTATAAAATTGGTCAACTTATAG</genome_strand>
        <mrna_strand>CCTTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGGCAGCGTTCAAACAGACCTAATTCTACAGCTCCCGATCAGTCGAGTAAAGACAATTGATCCACCTATGTTTTCACTAACAGTTCATGTGACACTAATTCATTGTCAACACCAGATTTGATGTTACATGGTCCATTGAAAAGAGTTGTCTTGATTTCCAGGATAGTGAAGTATTTACCCTATCCCTCTAGTATAAAATTGGTCAACTTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560883" ref_strand="+" ref_description="SGN-E560883 [20606]">
      <seq>ctgcatctgatctaaaatcaagaaaacttccagctactctaatggtaggatgtgcaatttctgacctgaaacttgatcccaaagttgacaaaatggcaaatgctgaatccaaagatgacatcaaagcatcgtcggatccaaaaccgagtaaagcaacagtgaaaaacacttcaaaaccggtcccaaaagctgagctaaagtctgcagaagttggtacttctgattccaaagatcctccagagaacatctctagcaacaagcaagttaagaaggtaagccaggaaagtggtcgcacgaccaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcacaatctaaaagagaggatgaaaaaccacaagtcacacaaccatctgtgccatcgaaacctgcattggaagagaacattgttcttggtgttgctctcgagggttcaaaaagaacccttccaattgaagaagagctgtcgccaccaccaaatccagcagaatccaaggaaatggctactagccgtagtagtagtaatgcttctaccattgcagagaaagataaacaagacggacagcgttcaacagacctaattctacagcccccagaatcagtccgggtaaaagggcccttcaaccgacaattgattcgactatgttttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="66646" stop="67901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66946" g_stop="67587" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E560883" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66946" e_stop="67587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGGCAGCGTTCAAACAGACCTAATTCTACAGCTCCCG</genome_strand>
        <mrna_strand>CTGCATCTGAT-CTAAAATC-AAGAAA-ACTTCCAGCT-ACTCTAATGGT-AGGATGTG-CAATTTCTGACCTGAAACTTGATCCCAAAGTTGACAAAATGGCAAATGCTGAATCCAAAGATGACATCAAAGCATCGTCGGATCCAAAACCGAGTAAAGCAACAGTGAAAAACACTTCAAAACCGGTCCCAAAAGCTGAGCTAAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTAAGAAGGTAAGCCAGGAAAGTGGTCGCACGACCAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACAATCTAAAAGAGAGGATGAAAAACCACAAGTCACACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCGCCACCACCAAATCCAGCAGAATCCAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGACAGCGTTC-AACAGACCTAATTCTACAGCCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389669" ref_strand="+" ref_description="SGN-E389669 [TUS-4-N16](-)">
      <seq>ggcacatgctgaatccaaagatgacattaaagcatcgtctgatccaaaatcgagtaaagcaacagtgaaaaacacttcacaaccggtcccaaaagctgagcttaagtctgcagaagttggtacttctgattccaaagatcctccagagaacatctctagcaacaagcaagttgagaaggtaagccaggggattggtcgcacgacaaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcactacctaagagagaagatgaaaaacaacaagtctcacaaccatctgtgccatcgaaacctgcattggaagagaacattgttcttggtgttgctctcgagggttcaaaaagaacccttccaattgaagaagagctgtctcccccaccaaatccagcagaatcgaaggaaatggctactagccgtagtagtagtaatgcttctaccattgcagagaaagataaacaagacgggcagcgttcaaacagacctaattctacagctcccgatcagtcgagtaaagacaattgatccacctatgttttcactaacagttcatgtgacactaattcattgtcaacaccagatttgatgttacatggtccattgaaaagagttgtcttgatttggaagatagtgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="66746" stop="68022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67046" g_stop="67722" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E389669" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67046" e_stop="67722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGGCAGCGTTCAAACAGACCTAATTCTACAGCTCCCGATCAGTCGAGTAAAGACAATTGATCCACCTATGTTTTCACTAACAGTTCATGTGACACTAATTCATTGTCAACACCAGATTTGATGTTACATGGTCCATTGAAAAGAGTTGTCTTGATTTCCAGGATAGTGAAGT</genome_strand>
        <mrna_strand>GGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGGCAGCGTTCAAACAGACCTAATTCTACAGCTCCCGATCAGTCGAGTAAAGACAATTGATCCACCTATGTTTTCACTAACAGTTCATGTGACACTAATTCATTGTCAACACCAGATTTGATGTTACATGGTCCATTGAAAAGAGTTGTCTTGATTTGGAAGATAGTGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733111" ref_strand="+" ref_description="SGN-E733111 [LB04AA06]">
      <seq>cgtgagaaggtaagccaggggattggtcgcacgacaaatgtagttgataattccgcaacttctccatcagatgttagagagaaaacaggaaatgtcccatctacttcactacctaagagagaagatgaaaaacaacaagtctcacaaccatctgtgccatcgaaacctgcattggaagagaacattgttcttggtgttgctctcgagggttcaaaaagaacccttccaattgaagaagagctgtctcccccaccaaatccagcagaatcgaaggaaatggctactagccgtagtagtagtaatgcttctaccattgcagagaaagataaacaagacgggcagcgttcaaacagacctaattctacagctcccgatcagtcgagtaaagacaattgatccacctatgttttcactaacagttcatgtgacactaattcattgtcaacaccagatttgatgttacatggtccattgaaaagagttgtcttgatttccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="66917" stop="68015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67215" g_stop="67721" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E733111" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67215" e_stop="67721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGGCAGCGTTCAAACAGACCTAATTCTACAGCTCCCGATCAGTCGAGTAAAGACAATTGATCCACCTATGTTTTCACTAACAGTTCATGTGACACTAATTCATTGTCAACACCAGATTTGATGTTACATGGTCCATTGAAAAGAGTTGTCTTGATTTCCAGGATAGTGAAG</genome_strand>
        <mrna_strand>CGTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGGCAGCGTTCAAACAGACCTAATTCTACAGCTCCCGATCAGTCGAGTAAAGACAATTGATCCACCTATGTTTTCACTAACAGTTCATGTGACACTAATTCATTGTCAACACCAGATTTGATGTTACATGGTCCATTGAAAAGAGTTGTCTTGATTTCCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746139" ref_strand="+" ref_description="SGN-E746139 [GI|47104915]">
      <seq>gatattatatggaaggggagagataggtgcccccatgggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatatattttactatgtaatgtcagttcttgtagtttattcaaaagggtggtttgtttcatttggttgatgtagcagaggttgataatattatcaaatggcagctagtggaattgatttcattattgcctagttctgtttttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74494" stop="68015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74194" g_stop="74159" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74158" i_stop="73970" i_length="189">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73969" g_stop="73806" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="200" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="263" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="345" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="416" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="505" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="709" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="980" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="981" r_stop="1208" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1209" r_stop="1406" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="68911" g_stop="68304" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1407" r_stop="2014" r_length="608" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E746139" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2014</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74194" e_stop="74159"/>
          <exon e_start="73969" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTAGTTCTGTTTTTCTATATTCAAACTCGA</genome_strand>
        <mrna_strand>GATATTATATGGAAGGGGAGAGATAGGTGCCCCCAT.............................................................................................................................................................................................GGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTAGTTCTGTTTTTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572793" ref_strand="-" ref_description="SGN-E572793 [32002]">
      <seq>gatggaagattaaaagagccttgcttttttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatattttcgtttccgcctcccctggaaatatgcacaatgcaatggtgggacacagaacatacaacaatatgaagacaataaggccaaacatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttattattatttgtttggtcatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtaggggtaatatatatttatgtgtcaccacgttgagatttacggtaggggtggaaggaatatgttgtacaatatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatattttactatgtaatgtcagttcttgtagtttaatcagaagggtggtttgtttcatttggttgatgtagcagaggttgataattatcaaatggcaactagtggaattgatttcattatgtctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70106" stop="68031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69806" g_stop="69659" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68911" g_stop="68331" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="725" r_length="576" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E572793" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572793" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69806" e_stop="69659"/>
          <exon e_start="68911" e_stop="68331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAAGATAAAAAGAGCCTTGC-TTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTAC-A-ATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTA</genome_strand>
        <mrna_strand>GATGGAAGATTAAAAGAGCCTTGCTTTTTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTCGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACACAGAACATACAACAATATGAAGACAATAAGGCCAAACATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATTATTATTTGTTTGGTCATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTA-GGGGTAATATATATTTATGTGTCACCACGTTGAGA-TTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAG--ATATTTTACTATGTAATGTCAGTTCTTGTAGTTTAATCAGAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGAT-A-ATTATCAAATGGCAACTAGTGGAATTGATTTCATTA-TGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589807" ref_strand="-" ref_description="SGN-E589807 [43389]">
      <seq>gttgattattatgttggcatgcacagtgatattttcgtttccgcctcccctggaaatatgcacaatgcaatggtgggacacagaacatacaacaatatgaagacaataaggccaaacatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttattattatttgtttggtcatcacattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtaggggtaatatatatttatgtgtcaccacgttgagatttacggtaggggtggaaggaatatgttgtacaatatatgtgtgttactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatatattttactatgtaatgtcggttcttgtagtttaatcaaaagggtggtttgtttcatttggttgatgtagcagaggttgataatcatcaaatggcaactagtggaattgatttcaaaaaaaaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70030" stop="68041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69730" g_stop="69659" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68911" g_stop="68342" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="640" r_length="568" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="641" polyA_stop="659"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E589807" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589807" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69730" e_stop="69659"/>
          <exon e_start="68911" e_stop="68342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTAC-A-ATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC</genome_strand>
        <mrna_strand>GTTGATTATTATGTTGGCATGCACAGTGATATTTTCGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACACAGAACATACAACAATATGAAGACAATAAGGCCAAACATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATTATTATTTGTTTGGTCATCACATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTA-GGGGTAATATATATTTATGTGTCACCACGTTGAGA-TTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATATGTGTGTTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCGGTTCTTGTAGTTTAATCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGAT-A-ATCATCAAATGGCAACTAGTGGAATTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227568" ref_strand="+" ref_description="SGN-E227568 [cLEL-30-L12](-)">
      <seq>tgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccctatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtccccccgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatatattttactatgtaatgtcagttcttgtagtttattcaaaagggtggtttgtttcatttggttgatgtagcagaggttgataatattatcaaatggcagctagtggaattgatttcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="69029" stop="68041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68729" g_stop="68342" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="414"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E227568" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68729" e_stop="68342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC</genome_strand>
        <mrna_strand>TGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCCTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCCCCCCGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227350" ref_strand="+" ref_description="SGN-E227350 [cLEL-30-L12](-)">
      <seq>cctgattgtatgtgccaagcttgagagggcctcccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgcccccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatatattttactatgtaatgtcagttcttgtagtttattcaaaagggtggtttgtttcatttggttgatgtagcagaggttgataatattatcaaatggcagctagtggaattgatttcaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="69025" stop="68041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68725" g_stop="68342" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="385" polyA_stop="410"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E227350" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68725" e_stop="68342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC</genome_strand>
        <mrna_strand>CCTGATTGTATGTGCCAAGCTTGAGAGGGCCTCCCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCCCCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615471" ref_strand="-" ref_description="SGN-E615471 [65270]">
      <seq>atgaagaattaaggagtcaaggacggtgcccatttgacccccgaagaaagttggattgctgctggcactnttgggattcgacacacactcgcctatatcttgcctcccataaaggtttatgcnggggaacgcagggtttcagccttaagaagtttgtttcnccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattatgatgttggcatgcacagtgatattttcgtttccgcctcccctggaaatatgcacaatgcaatggtgggacacagaacatacaacaatatgaagacaataaggccaaacatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttattattatttgtttggtcatcaaattattgtttattatgccttatattatagttataaataagataccaccccttttgttgacttgtagggggtaatatatatttatgtgtcaccacgttgagatttacggtaggggtggaaggaatatgttgtacaatatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatatattttactatgtaatgtcagttcttgtagtttaatcaaaagggtggtttgtttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70383" stop="68102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70083" g_stop="69971" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.876"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="0.84"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="313" r_length="199" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68911" g_stop="68396" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="830" r_length="517" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E615471" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615471" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70083" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGAATTAAGGAGTCAAGGAAGGTGCCCA-TTGACTCCCGAAGAA-GTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCAT-AAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTC-CCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTAC-A-ATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGT</genome_strand>
        <mrna_strand>ATGAAGAATTAAGGAGTCAAGGACGGTGCCCATTTGACCCCCGAAGAAAGTTGGATTGCTGCTGGCACTNTTGGGATTCGAC-AC-ACACTCGCCTATATCTTGCCTCCCATAAAG..................................................................................................................GTTTATGCNGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCNCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATGATGTTGGCATGCACAGTGATATTTTCGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACACAGAACATACAACAATATGAAGACAATAAGGCCAAACATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATTATTATTTGTTTGGTCATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATACCACCCCTTTTGTTGACTTGTAGGGGGTAATATATATTTATGTGTCACCACGTTGAGA-TTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTAATCAAAAGGGTGGTTTGTTTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577812" ref_strand="-" ref_description="SGN-E577812 [LE15DH01]">
      <seq>cttaagaagtttgttcccntgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatatattttactatgtaatgtcagttcttgtagtttattcaaaagggtggtttgtttcaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70127" stop="68102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69827" g_stop="69659" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68911" g_stop="68403" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="677" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="702"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E577812" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577812" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69827" e_stop="69659"/>
          <exon e_start="68911" e_stop="68403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTC</genome_strand>
        <mrna_strand>CTTAAGAAGTTTG-TTCCCNTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580581" ref_strand="-" ref_description="SGN-E580581 [5824]">
      <seq>cacagaacatacaacaatatgaagacaataagccaaacatggcattgttagcccagctttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctacctatatagatctttattattatttgtttggtcatcacattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtaggggtaatatatatttatgtgtcaccacgttgagatttacggtaggggtggaaggatatatgttgtacaatatatgtgtgttactcctatgaagagtgcaatatacagatagtagtattctagtcttgacagatatattttactatgtaatgtcggttcttgtagtttaatcaaaagggtggtttgtttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="69205" stop="68102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68905" g_stop="68403" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="518"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E580581" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580581" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68905" e_stop="68403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGC-TTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACC-ATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGA-ATATGTTGTAC-A-ATATGTGTATTACTCCTATGAAGAGTGC-ATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTC</genome_strand>
        <mrna_strand>CACAGAACATACAACAATATGAAGACAATAA-GCCAAACATGGCATTGTTAGCCCAGCTTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCTATATAGATCTTTATTATTATTTGTTTGGTCATCACATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTA-GGGGTAATATATATTTATGTGTCACCACGTTGAGA-TTTACGGTAGGGGTGGAAGGATATATGTTGTACAATATATGTGTGTTACTCCTATGAAGAGTGCAATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCGGTTCTTGTAGTTTAATCAAAAGGGTGGTTTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606642" ref_strand="+" ref_description="SGN-E606642 [22589]">
      <seq>cggcacgagggcaaacatggcattgttaggccagctttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatataaatctttattattatttgtttggtcatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtaggggtaatatatatttgtgtgtcaccacgttgagatttacggtaggtgtggaaggaatatgttgtacaatatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatattttactatgtaatgtcagttcttgtagtttaatcagaagggtggtttgtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="69182" stop="68102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68883" g_stop="68403" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="488"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E606642" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E606642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68883" e_stop="68403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTAC-A-ATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTC</genome_strand>
        <mrna_strand>CGGCACGAGGGC-AAACATGGCATTGTTAGGCCAGC-TTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAAATCTTTATTATTATTTGTTTGGTCATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTA-GGGGTAATATATATTTGTGTGTCACCACGTTGAGA-TTTACGGTAGGTGTGGAAGGAATATGTTGTACAATATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAG--ATATTTTACTATGTAATGTCAGTTCTTGTAGTTTAATCAGAAGGGTGGTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712354" ref_strand="+" ref_description="SGN-E712354 [FB04CE02]">
      <seq>caatacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacattgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctattcttgacagatatattttactatggaatgtcagttcttgtagtttattcaaaagggtgggttgtttcaacataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="69137" stop="68102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68837" g_stop="68403" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E712354" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68837" e_stop="68403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTC</genome_strand>
        <mrna_strand>CAATACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACATTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTATTCTTGACAGATATATTTTACTATGGAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGGTTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370385" ref_strand="+" ref_description="SGN-E370385 [TUS-28-K11](-)">
      <seq>ctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcgggaaacgcagggttcagcccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatatattttactatgtaatgtcagttcttgtagtttattcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70317" stop="68117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70017" g_stop="69971" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="245" r_length="198" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68911" g_stop="68412" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="745" r_length="500" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E370385" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70017" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTG</genome_strand>
        <mrna_strand>CTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGAAACGCAGGGTTCAGCCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417880" ref_strand="+" ref_description="SGN-E417880 [STM-26-G8]">
      <seq>tacatagtaaaatatctgtcaagactagaatactactatctgtatatgctctcttcataggagtaatacacatatattgtacaacatattccttccacccctaccgtaaatctcaacgtggtgacacataaatatatattaccctctacaagtcaacaaaaggggtggcatcttatttataactataatataaggcataataaacaataatttgatgaccaaacaaataataataaagaactatagggtaggccctctcaagcttggcacatacaatcaggagcaggatatgtatagagggattgcttgggtttgcggagtctgatttggccttgtctgttttggtgcccttcaattactgattcttgaaactcaggccaagtgagtgtcttgttcaagaaaagctggcctaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="68144" stop="69161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68444" g_stop="68861" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E417880" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68444" e_stop="68861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATAGTAAAATATATCTGTCAAGACTAGAATACTACTATCTGTATATGCACTCTTCATAGGAGTAATACAC--ATATTGTACAACATATTCCTTCCACCCCTACCGTAAAATCTCAACGTGGTGACACATAAATATAAATTACCCCCTACAAGTCAACAAAAGGGGTGGCATCTTATTTATAACTATAATATAAGGCATAATAAACAATAATTTGATGTCCAAACAAATAGTGATAAAGATCTATATGGTAGGCCCTCTCAAGCTTGGCACATACAATCAGGAGCAGGATATGTATAGAGGGATTGCTTGGGTTTGCGGAGTCTGATTTGGCCTTGTCTGTTTTGGTGCCCTTCAATTACTGATTCTTGAAACTCAGGCCAAGTGAGTGTCTTGTTCAAGAAAAGCTGGCCTAACAAT</genome_strand>
        <mrna_strand>TACATAGT-AAA-ATATCTGTCAAGACTAGAATACTACTATCTGTATATGCTCTCTTCATAGGAGTAATACACATATATTGTACAACATATTCCTTCCACCCCTACCGT-AAATCTCAACGTGGTGACACATAAATATATATTACCCTCTACAAGTCAACAAAAGGGGTGGCATCTTATTTATAACTATAATATAAGGCATAATAAACAATAATTTGATGACCAAACAAATAATAATAAAGAACTATAGGGTAGGCCCTCTCAAGCTTGGCACATACAATCAGGAGCAGGATATGTATAGAGGGATTGCTTGGGTTTGCGGAGTCTGATTTGGCCTTGTCTGTTTTGGTGCCCTTCAATTACTGATTCTTGAAACTCAGGCCAAGTGAGTGTCTTGTTCAAGAAAAGCTGGCCTAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466386" ref_strand="+" ref_description="SGN-E466386 [cPRO-24-E23]">
      <seq>gaattaaggagtcaaggacggtgcccattgacccccgaagaagttggattgctgctggcagctttgggattcgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatattttcgtttccgcctcccctggaaatatgcacaatgcaatggtgggacacagaacatacaacaatatgaagacaataaggccaaacatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatataaatctttattattatttgtttggtcatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtangggtaatatatatttgtgtgtcaccacgttgagatttacggtangtgtggaaggaatatgttgtacaatatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacagatattttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70378" stop="68148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70078" g_stop="69971" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="306" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68911" g_stop="68448" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="768" r_length="462" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E466386" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70078" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTAC-A-ATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTA</genome_strand>
        <mrna_strand>GAATTAAGGAGTCAAGGACGGTGCCCATTGACCCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTCGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTCGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACACAGAACATACAACAATATGAAGACAATAAGGCCAAACATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAAATCTTTATTATTATTTGTTTGGTCATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTA-NGGGTAATATATATTTGTGTGTCACCACGTTGAGA-TTTACGGTANGTGTGGAAGGAATATGTTGTACAATATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAG--ATATTTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578319" ref_strand="-" ref_description="SGN-E578319 [LE12CC08]">
      <seq>agctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaccaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaggaatatgttgtacaatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcttgacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70319" stop="68156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70019" g_stop="69971" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="247" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68911" g_stop="68453" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="706" r_length="459" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E578319" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578319" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70019" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTT</genome_strand>
        <mrna_strand>AGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACACCAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614808" ref_strand="+" ref_description="SGN-E614808 [64600]">
      <seq>caagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatataaatctttattattatttgtttggtcatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtaggggtaatatatatttgtgtgtcaccacgttgagatttacggtaggtgtggaaggaatatgttgtacaatatatgtgtattactcctatgaagagtgcatatacagatagtagtattctagtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="69053" stop="68168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68753" g_stop="68458" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E614808" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68753" e_stop="68458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTAC-A-ATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATA</genome_strand>
        <mrna_strand>CAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAAATCTTTATTATTATTTGTTTGGTCATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTA-GGGGTAATATATATTTGTGTGTCACCACGTTGAGA-TTTACGGTAGGTGTGGAAGGAATATGTTGTACAATATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224218" ref_strand="+" ref_description="SGN-E224218 [cLEL-19-F12](-)">
      <seq>aatgcaatggtcggtcagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaaaacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattaatgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaaaaatatgttgtacaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="69220" stop="68218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68911" g_stop="68516" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="405" r_length="396" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E224218" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68911" e_stop="68516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATG</genome_strand>
        <mrna_strand>GTCGGTCAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAAACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTAATGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAAAAATATGTTGTACAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224069" ref_strand="+" ref_description="SGN-E224069 [cLEL-19-F12](-)">
      <seq>cttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttaaaagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacatgtagggggtaatttatatttatgtgtcaccacgttgagattttacggtaggggtggaaggaatatgttgtacaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="69148" stop="68218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68848" g_stop="68516" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E224069" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68848" e_stop="68516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATG</genome_strand>
        <mrna_strand>CTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTAAAAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACATGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268575" ref_strand="+" ref_description="SGN-E268575 [cLEI-13-F9]">
      <seq>ttccttccacccctaccgtaaaatctcaacgtggtgacacataaatataaattaccccctacaagtcaacaaaaggggtggcatcttatttataactataatataaggcataataaacaataatttgatgtccaaacaaatagtgataaagatctatatggtaggccctctcaagcttggcacatacaatcaggagcaggatatgtatagagggattgcttgggtttgcggagtctgatttggccttgtctgttttggtgcccttcaattactgattcttgaaactcaggccaagtgagtgtcttgttcaagaaaagctggcctaacaatgccatatttggcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="68232" stop="69177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68532" g_stop="68877" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E268575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68532" e_stop="68877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCACCCCTACCGTAAAATCTCAACGTGGTGACACATAAATATAAATTACCCCCTACAAGTCAACAAAAGGGGTGGCATCTTATTTATAACTATAATATAAGGCATAATAAACAATAATTTGATGTCCAAACAAATAGTGATAAAGATCTATATGGTAGGCCCTCTCAAGCTTGGCACATACAATCAGGAGCAGGATATGTATAGAGGGATTGCTTGGGTTTGCGGAGTCTGATTTGGCCTTGTCTGTTTTGGTGCCCTTCAATTACTGATTCTTGAAACTCAGGCCAAGTGAGTGTCTTGTTCAAGAAAAGCTGGCCTAACAATGCCATATTTGGCCTTA</genome_strand>
        <mrna_strand>TTCCTTCCACCCCTACCGTAAAATCTCAACGTGGTGACACATAAATATAAATTACCCCCTACAAGTCAACAAAAGGGGTGGCATCTTATTTATAACTATAATATAAGGCATAATAAACAATAATTTGATGTCCAAACAAATAGTGATAAAGATCTATATGGTAGGCCCTCTCAAGCTTGGCACATACAATCAGGAGCAGGATATGTATAGAGGGATTGCTTGGGTTTGCGGAGTCTGATTTGGCCTTGTCTGTTTTGGTGCCCTTCAATTACTGATTCTTGAAACTCAGGCCAAGTGAGTGTCTTGTTCAAGAAAAGCTGGCCTAACAATGCCATATTTGGCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316547" ref_strand="+" ref_description="SGN-E316547 [cTOA-25-D11]">
      <seq>tttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtagggggtaatttatatttatgtgtcaccacgttgagatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70419" stop="68250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70119" g_stop="69971" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="347" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68911" g_stop="68550" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="709" r_length="362" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E316547" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70119" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTA</genome_strand>
        <mrna_strand>TTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479011" ref_strand="+" ref_description="SGN-E479011 [cSTD-8-M11]">
      <seq>ggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggacggtgcccattgacccccgaagaagttggattgctgctggcagctttgggattcgacaacaacacttgtctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatattttcgtttccgcctcccctggaaatatgcacaatgcaatggtgggacacagaacatacaacaatatgaagacaataaggccaaacatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttattattatttgtttggtcatcacattattgtttattatgccttatattatagttataaataagatgccaccccttttgttgacttgtangggtaatatatatttatgtgtcaccacgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70414" stop="68258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70114" g_stop="69971" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="342" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68911" g_stop="68558" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="695" r_length="353" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E479011" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70114" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTG</genome_strand>
        <mrna_strand>GGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGACGGTGCCCATTGACCCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTCGACAACAACACTTGTCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTCGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACACAGAACATACAACAATATGAAGACAATAAGGCCAAACATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATTATTATTTGTTTGGTCATCACATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTA-NGGGTAATATATATTTATGTGTCACCACGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299446" ref_strand="+" ref_description="SGN-E299446 [cLET-43-L1]">
      <seq>cattattggctgcagttgattattatgttggcatgcacagagatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattggatgtgccaagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaattattgcttattatgccttatattatagttataaataagatgccaccccttttgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70044" stop="68296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69744" g_stop="69659" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68911" g_stop="68596" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="402" r_length="316" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E299446" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69744" e_stop="69659"/>
          <exon e_start="68911" e_stop="68596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGAC</genome_strand>
        <mrna_strand>CATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGAGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGGATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGCTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597154" ref_strand="+" ref_description="SGN-E597154 [40651]">
      <seq>tggctgctcattcagcctgtgattttggtggtggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactcgcaatttactgatgaagaattaaggagtcaaggacggtgcccattgacccccgaagaagttggattgctgctggcagctttgggattcgacaacaacactcgtctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatattttcgtttccgcctcccctggaaatatgcacaatgcaatggtgggacacagaacatacaacaatatgaagacaataaggccaaacatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgccaagcttgagagggcctaccatatagatctttattattattctgtctggtcatcaaattattgtttattatgccttatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70494" stop="68329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70194" g_stop="69971" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="422" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68911" g_stop="68629" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="706" r_length="284" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E597154" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70194" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATT-TGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTAT</genome_strand>
        <mrna_strand>TGGCTGCTCATTCAGCCTGTGATTTTGGTGGTGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCGCAATTTACTGATGAAGAATTAAGGAGTCAAGGACGGTGCCCATTGACCCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTCGACAACAACACTCGTCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTCGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACACAGAACATACAACAATATGAAGACAATAAGGCCAAACATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATTATTATTCTGTCTGGTCATCAAATTATTGTTTATTATGCCTTATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731420" ref_strand="+" ref_description="SGN-E731420 [LA27AC10]">
      <seq>gtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcctgctcctgattgtatgtgcccagcttgagagggcctaccatatagatctttatcactatttgtttggacatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70924" stop="68355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70624" g_stop="70434" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="419" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="617" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68911" g_stop="68655" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="874" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E731420" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70624" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAA</genome_strand>
        <mrna_strand>GTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCCAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703686" ref_strand="+" ref_description="SGN-E703686 [FA22AG05]">
      <seq>ttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactcccgcaaaccaaagcatccctctatacatatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71417" stop="68428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71117" g_stop="71089" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="300" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="528" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="726" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68911" g_stop="68728" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="910" r_length="184" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E703686" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71117" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACT-CCGCAAACCCAAGCAATCCCTCTATACATATCCTG</genome_strand>
        <mrna_strand>TTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCCGCAAACCAAAGC-ATCCCTCTATACATATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481744" ref_strand="+" ref_description="SGN-E481744 [cSTD-19-I12]">
      <seq>gcaacaactaccttagagaggttactgatctcaagcccaaacaaggaggtggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggtggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggacggtgcccattgacccccgaagaagttggattgctgctggcagctttgggattcgacaacaacacttgtctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatattttcgtttccgcctcccctggaaatatgcacaatgcaatggtgggacacagaacatacaacaatatgaagacaataaggccaaacatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagntattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaagcaatccctctatacatatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70819" stop="68429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70519" g_stop="70434" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="314" r_length="228" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="512" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68911" g_stop="68729" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="695" r_length="183" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E481744" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70519" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCT</genome_strand>
        <mrna_strand>GCAACAACTACCTTAGAGAGGTTACTGATCTCAAGCCCAAACAAGGAGGTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGTGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGACGGTGCCCATTGACCCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTCGACAACAACACTTGTCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTCGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACACAGAACATACAACAATATGAAGACAATAAGGCCAAACATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGNTATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729029" ref_strand="+" ref_description="SGN-E729029 [LA19DA04]">
      <seq>gcaggcttttacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattgaagggcaccaaaacagacaaggccaaatcagactccgcaaacccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70505" stop="68450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70448" g_stop="70434" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="243" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="441" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68911" g_stop="68750" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="603" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E729029" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70448" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAG</genome_strand>
        <mrna_strand>GCAGGCTTTTACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600381" ref_strand="+" ref_description="SGN-E600381 [53391]">
      <seq>ggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatattttcgtttccgcctcccctggaaatatgcacaatgcaatggtgggacacagaacatacaacaatatgaagacaataaggccaaacatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagtttcaagaatcagtaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70103" stop="68496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69803" g_stop="69659" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68911" g_stop="68796" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="261" r_length="116" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E600381" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69803" e_stop="69659"/>
          <exon e_start="68911" e_stop="68796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGA</genome_strand>
        <mrna_strand>GGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTCGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGACACAGAACATACAACAATATGAAGACAATAAGGCCAAACATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698850" ref_strand="+" ref_description="SGN-E698850 [FA07DB08]">
      <seq>aagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaagacactcacttggcctgagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70766" stop="68513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70466" g_stop="70434" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="261" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="459" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68911" g_stop="68813" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="558" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E698850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70466" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTT</genome_strand>
        <mrna_strand>AAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370223" ref_strand="+" ref_description="SGN-E370223 [TUS-28-C24]">
      <seq>ttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaagacaataaggccaaatatggcattgttaggccagcttttcttgaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70894" stop="68534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70594" g_stop="70434" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="389" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="587" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68911" g_stop="68834" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="665" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E370223" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70594" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAG</genome_strand>
        <mrna_strand>TTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270625" ref_strand="+" ref_description="SGN-E270625 [cLEM-6-E9]">
      <seq>ttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaatatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70894" stop="68582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70594" g_stop="70434" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="389" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="587" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68911" g_stop="68882" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="617" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E270625" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70594" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAATATGAAG</genome_strand>
        <mrna_strand>TTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAATATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707898" ref_strand="+" ref_description="SGN-E707898 [FA34BB04]">
      <seq>cgtatctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctcccctggaaatatgcacaatgcaatggtcggacagagaacatacaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71538" stop="68589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71238" g_stop="71089" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="421" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="649" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69856" g_stop="69659" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="847" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68911" g_stop="68889" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="848" r_stop="870" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E707898" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71238" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69659"/>
          <exon e_start="68911" e_stop="68889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATGGTAATCATTCAAATCTTTTCATTTTCTAGTTTCACTGTGCTTGCTATACCTCCCTTTAGAATCTACTCCATTAGTTGTTAGTCATTTCTTCCAAACGTGTTAATAGTAGATTTAAGTTATATACACTGATAGAATATAGTTTAACTTGTGATCACAGGTTAGTTACAATTACCGGATTACTCCCTCTCTGTTGTGCCTTATGTGACATTCTTTCCTTTTAGTTCTTTTTGGTCTGACAAGCTAAGAATGACACCTTTCTAATCAATAAAAACATTTTAATCTTGAACATGCCAATTAAACCTTAAAGTCATGGTTTTATAGTCACAGAAATGTAATGACATTTGAATCACTAGCATCAAAAGTCTGTCATTCTTTCTGTCTACTCGAAGACTTCACGTAAAATGGAACGTTCCACTCCAAGTGCATCACATTAAGTGAGACAGACGGCAAAGAGTTACCCTAAGTGATTTGTTGATGTTACGGTTCCTTGCATGTATGCTCTGCACTGCTTACCTATTAGTTGTCTTTTTTTTTTTTCACTGTCGTTTTTCCTTTCTGTTACTACCTTGATTTGCTTCACTCCACGAGGTAGGAGTAAGGTAATGCATACACTGGGGATGTTGTTGATTTTGGCCGAGTGAATAGTTCTTACACGGTCAATGCACAGAACACAGACGCCGCATTATTAGGCTGACTAAATGTGGTCCACACAGCAAATGAATAATACACCTACCTTGAAATTGACAGGTCGGACAGAGAACATACAACAA</genome_strand>
        <mrna_strand>CGTATCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGACAGAGAACATACAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710896" ref_strand="+" ref_description="SGN-E710896 [FA57BB06]">
      <seq>ccgtaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatgcacagtgatatttttgtttccgcctccccctggaaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71528" stop="69371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71230" g_stop="71089" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="412" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="640" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69856" g_stop="69671" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="827" r_length="187" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E710896" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71230" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCT-CCCCTGGAAATATG</genome_strand>
        <mrna_strand>CCGT-AAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCCTGGAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260735" ref_strand="+" ref_description="SGN-E260735 [cLEG-54-H8]">
      <seq>gacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaggaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71540" stop="69410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71240" g_stop="71089" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="423" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="651" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69856" g_stop="69710" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="798" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E260735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71240" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATG</genome_strand>
        <mrna_strand>GACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321161" ref_strand="+" ref_description="SGN-E321161 [cTOB-13-J17]">
      <seq>agcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaagtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaagaagtttgtttcccctgatggaagataaaaagagccttgcttcttctgaagaaagagctcttatcaaaggaaaggcttcattattggctgcagttgattattatgttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70908" stop="69410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70608" g_stop="70434" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="403" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69856" g_stop="69710" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="550" r_length="147" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E321161" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70608" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATG</genome_strand>
        <mrna_strand>AGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAAGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAAGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602085" ref_strand="+" ref_description="SGN-E602085 [55139]">
      <seq>gttgctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgtagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaatcgctgccatagcaccattttctcaccggctgacgtttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttccgcacatcagacaactcggggatgcccttatcactcgcctgaggtttcctcctagtgaagacagcatggttagtaacaactaccttagagaggttactgatcttaagcccaaacaaggaggtggcaagttcgctgttcttcaccgttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggtggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggacggtgcccattgacccccgaagaagttcgattgctgctggcagctttgggattcgacaacaacactcgcctatatcttgnctcccataaggtttatggcggggaaccgcccggtttcagccttaagaagttcgtttcccctggatggaacgatacaacaagaggctttcttcttctgaggaaaagagctcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71537" stop="69459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71237" g_stop="71089" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="421" r_length="272" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.900" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="649" r_length="228" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69856" g_stop="69759" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="753" r_length="104" r_score="0.827"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E602085" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71237" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACC-TTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAA-CGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCT-GATGGAA-GATA-AA-AAGAGCCTTGCTTCTTCTGAGG-AAAGAGCTCTTAT</genome_strand>
        <mrna_strand>GTTGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATCGCTGCCATAGCACCATTTTCTCACCGGCTGACGTTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCGCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTGAGGTTTCCTCCTAGTGAAGACAGCATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTTAAGCCCAAACAAGGAGGTGGCAAGTTCGCTGTTCTTCACCGTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGTGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGACGGTGCCCATTGACCCCCGAAGAAGTTCGATTGCTGCTGGCAGCTTTGGGATTCGACAACAACACTCGCCTATATCTTGNCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACCGCCCGGTTTCAGCCTTAAGAAGTTCGTTTCCCCTGGATGGAACGATACAACAAGAGGCTTTCTTCTTCTGAGGAAAAGAGCTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725552" ref_strand="+" ref_description="SGN-E725552 [LA04AB04]">
      <seq>attttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacacactcgcctatatcttgcctnccataaggtttatggcggggaacgcangggttcagccttaagagttngtttcccctgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70980" stop="69501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70680" g_stop="70434" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="474" r_length="227" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69856" g_stop="69801" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="529" r_length="55" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E725552" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70680" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGA</genome_strand>
        <mrna_strand>ATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAAC-ACACTCGCCTATATCTTGCCTNCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCANGGGTTCAGCCTTAAG-AGTTNGTTTCCCCTGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703913" ref_strand="+" ref_description="SGN-E703913 [FA22DC11]">
      <seq>aagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggatttgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaacgcagggtttcagccttaaaaagtttgtttcccctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71699" stop="69504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71399" g_stop="71372" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="232" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="503" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="731" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69856" g_stop="69804" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="784" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E703913" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71399" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGAT</genome_strand>
        <mrna_strand>AAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAAAAGTTTGTTTCCCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365332" ref_strand="+" ref_description="SGN-E365332 [cLPT-2-F15]">
      <seq>aagcattggcctttgttccgcacatcagacaactcggggatgcccttatcactcgcctgaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggaggtggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggaaggtgcccattgactcccgaagaagttggattgctgctggcagctttgggattcgacaacaacactcgcctatatcttgcctcccataaggtttatggcggggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70909" stop="69661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70609" g_stop="70434" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70198" g_stop="69971" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="404" r_length="228" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69856" g_stop="69841" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="420" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E365332" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70609" e_stop="70434"/>
          <exon e_start="70198" e_stop="69971"/>
          <exon e_start="69856" e_stop="69841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAGGTCTTCACTGAAGTTCTGCATTTATAGAAACAATATGCCTTTCTTTAAGGCTAGAATACTTGAAGTGTAAAGCTAATATCTTCGTGTCCTGAAGCTTGTTCATGTTTTTTCTAGGTTTATGGCGGGGAAC</genome_strand>
        <mrna_strand>AAGCATTGGCCTTTGTTCCGCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTGAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGGTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTCGACAACAACACTCGCCTATATCTTGCCTCCCATAAG..................................................................................................................GTTTATGGCGGGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598674" ref_strand="+" ref_description="SGN-E598674 [51645]">
      <seq>caagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagacgacgttgctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgtagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaatcgctgccatagcaccattttctcaccggctgacgtttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttccgcacatcagacaactcggggatgcccttatcactcgcctgaggtttcctcctagtgaagacagcatggttagtaacaactaccttagagaggttactgatcttaagcccaaacaaggaggtggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggtggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggacggtgcccattgacccccgaaagaagttggattgctgctgggcagctttgggattcggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71929" stop="69704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71629" g_stop="71588" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="131" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="335" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="606" r_length="271" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70198" g_stop="70008" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="799" r_length="193" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E598674" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71629" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="70008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCG-AAGAAGTTGGATTGCTGCT-GGCAGCTTTGGGATT</genome_strand>
        <mrna_strand>CAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTTGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATCGCTGCCATAGCACCATTTTCTCACCGGCTGACGTTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCGCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTGAGGTTTCCTCCTAGTGAAGACAGCATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTTAAGCCCAAACAAGGAGGTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGTGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGACGGTGCCCATTGACCCCCGAAAGAAGTTGGATTGCTGCTGGGCAGCTTTGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576598" ref_strand="+" ref_description="SGN-E576598 [59842]">
      <seq>ctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagacgacgttgctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgtagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaatcgctgccatagcaccattttctcaccggctgacgtttgacaacatgcccaagtacctccaacatctacgatgtaaagtcaactttcaagcattggcctttgttccgcacatcagacaactcggggatgcccttatcactcgcctgaggtttcctcctagtgaagacagcatggttagtaacaactaccttagagaggttactgatcttaagcccaaacaaggaggtggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggtggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttactgatgaagaattaaggagtcaaggacggtgcccattgacccccgaagaagttggattgctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71758" stop="69722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71458" g_stop="71372" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="291" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="562" r_length="271" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70198" g_stop="70022" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="739" r_length="177" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E576598" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71458" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="70022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTG</genome_strand>
        <mrna_strand>CTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTTGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATCGCTGCCATAGCACCATTTTCTCACCGGCTGACGTTTGACAACATGCCCAAGTACCTCCAACATCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCGCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTGAGGTTTCCTCCTAGTGAAGACAGCATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTTAAGCCCAAACAAGGAGGTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGTGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGACGGTGCCCATTGACCCCCGAAGAAGTTGGATTGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609518" ref_strand="+" ref_description="SGN-E609518 [25528]">
      <seq>ggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagacgacgttgctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgtagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaatcgctgccatagcaccattttctcaccggctgacgtttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttccgcacatcagacaactcggggatgcccttatcactcgcctgaggtttcctcctagtgaagacagcatggttagtaacaactaccttagagaggttactgatcttaagcccaaacaaggaggtggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgatttggtggtggcaaggctgaaaatttggctctagcttaatacaggccaagtaatttggggaggaaagggtcatcaacgtctcaatttacttgatgaagaattaagcgagtcaaggacggttgcccattgaccccgaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71701" stop="69737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71401" g_stop="71372" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="234" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="505" r_length="271" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70198" g_stop="70038" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="671" r_length="166" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E609518" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71401" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="70038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGG-CAAGTAATTTGGGGAGG-AAGGGTCATCAAC-TCTCAATTTAC-TGATGAAGAATTAAG-GAGTCAAGGAAGG-TGCCCATTGACTCCCGAAGA</genome_strand>
        <mrna_strand>GGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTTGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATCGCTGCCATAGCACCATTTTCTCACCGGCTGACGTTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCGCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTGAGGTTTCCTCCTAGTGAAGACAGCATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTTAAGCCCAAACAAGGAGGTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGA-TTTGGTGGTGGCAAGGCTGAAAATTTGGCTCTAGCTTAATACAGGCCAAGTAATTTGGGGAGGAAAGGGTCATCAACGTCTCAATTTACTTGATGAAGAATTAAGCGAGTCAAGGACGGTTGCCCATTGACCCCGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259639" ref_strand="+" ref_description="SGN-E259639 [cLEG-42-O15]">
      <seq>gacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggcaagtantttggggaggaagggtcatcaactctcaatttactgatgaagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71540" stop="69774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71240" g_stop="71089" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="423" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70198" g_stop="70074" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="548" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E259639" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71240" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="70074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATT</genome_strand>
        <mrna_strand>GACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTANTTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460573" ref_strand="+" ref_description="SGN-E460573 [cPRO-31-P15]">
      <seq>aaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgtagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaatcgctgccatagcaccattttctcaccggctgacgtttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttccgcacatcagacaactcggggatgcccttatcactcgcctgaggtttcctcctagtgaagacaacatggttagcaacaactaccttagagaggttactgatctcaagcccaaacaaggaggtggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggtggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttgggggagaaggntcatcaactctcaatttactgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71906" stop="69780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71606" g_stop="71588" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="108" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="312" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="583" r_length="271" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70198" g_stop="70080" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="702" r_length="119" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E460573" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71606" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="70080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGA</genome_strand>
        <mrna_strand>AAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATCGCTGCCATAGCACCATTTTCTCACCGGCTGACGTTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCGCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTGAGGTTTCCTCCTAGTGAAGACAACATGGTTAGCAACAACTACCTTAGAGAGGTTACTGATCTCAAGCCCAAACAAGGAGGTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGTGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGGAGAAGGNTCATCAACTCTCAATTTACTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588915" ref_strand="+" ref_description="SGN-E588915 [42478]">
      <seq>tggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagacgacgttgctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgtagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaatcgctgccatagcaccattttctcaccggctgacgtttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttccgcacatcagacaactcggggatgcccttatcactcgcctgaggtttcctcctagtgaagacagcatggttagtaacaactaccttagagaggttactgatcttaagcccaaacaaggaggtggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggtggcaaggctgaaaatttggctctagctaaatacaggcaagtaatttggggaggaagggtcatcaactctcaatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71702" stop="69786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71402" g_stop="71372" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="235" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="506" r_length="271" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70198" g_stop="70086" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="619" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E588915" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71402" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="70086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTAC</genome_strand>
        <mrna_strand>TGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTTGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATCGCTGCCATAGCACCATTTTCTCACCGGCTGACGTTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCGCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTGAGGTTTCCTCCTAGTGAAGACAGCATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTTAAGCCCAAACAAGGAGGTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGTGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366804" ref_strand="+" ref_description="SGN-E366804 [cLPT-6-O5]">
      <seq>acaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggaggtggcaagtttgctgttcttcaccttcgctatgacacggatatggctgctcattcagcctgtgattttggtggccgcaaggctgaaaatttggctctagctaaatacaggctagttatttggggaggaagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="70831" stop="69804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70531" g_stop="70434" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.900" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70198" g_stop="70104" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="193" r_length="95" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E366804" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70531" e_stop="70434"/>
          <exon e_start="70198" e_stop="70104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGT</genome_strand>
        <mrna_strand>ACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGGTGGCAAGTTTGCTGTTCTTCACCTTCGCTATGACACG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCCGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCTAGTTATTTGGGGAGGAAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282818" ref_strand="+" ref_description="SGN-E282818 [cLER-15-G22]">
      <seq>aagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71460" stop="69826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71160" g_stop="71089" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="343" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70198" g_stop="70126" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="416" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E282818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71160" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="70126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGC</genome_strand>
        <mrna_strand>AAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299324" ref_strand="+" ref_description="SGN-E299324 [cLET-43-H2]">
      <seq>gatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctgtgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagctaaatacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71582" stop="69828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71282" g_stop="71089" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="465" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70198" g_stop="70128" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="536" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E299324" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71282" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="70128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAG</genome_strand>
        <mrna_strand>GATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTGTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447895" ref_strand="+" ref_description="SGN-E447895 [cSTS-4-I19]">
      <seq>tgaaagacgacgtagccacagtcaaagagttgcctgatgaactctcttggagcacgcgagaacacttactggcgtagctatccgacctacaagaatcaagactgctccagttcactgccttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaatcgctgccatagcaccattttctcaccggctgacgtttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttccgcacatcagacaactcggggatgcccttatcactcgcctgaggtttcctcctagtgaagacaacatggttagcaacaactaccttagagaggttactgatctcaagcccaaacaaggaggtggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggtggcaaggctgaaaatttggctctagctaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71548" stop="69831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71248" g_stop="71089" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="435" r_length="271" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70198" g_stop="70131" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="503" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E447895" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71248" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="70131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATA-TTA-TGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCA-TG-CTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATA</genome_strand>
        <mrna_strand>TGAAAGACGACGTAGCCACAGTCAAAGAGTTGCCTGATGAACTCTCTTGGAGCACGCGAGAACACTTACTGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCACTGCCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATCGCTGCCATAGCACCATTTTCTCACCGGCTGACGTTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCGCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTGAGGTTTCCTCCTAGTGAAGACAACATGGTTAGCAACAACTACCTTAGAGAGGTTACTGATCTCAAGCCCAAACAAGGAGGTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGTGGCAAGGCTGAAAATTTGGCTCTAGCTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294819" ref_strand="+" ref_description="SGN-E294819 [cLET-17-H12]">
      <seq>tcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgtgattttggtggcggcaaggctgaaaatttggctctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71527" stop="69837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71227" g_stop="71089" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="410" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70198" g_stop="70137" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="472" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E294819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71227" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="70137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGC</genome_strand>
        <mrna_strand>TCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481598" ref_strand="+" ref_description="SGN-E481598 [cSTD-18-D2]">
      <seq>caagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgtagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaatcgctgccatagcaccattttctcaccggctgacgtttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttccgcacatcagacaactcggggatgcccttatcactcgcctgaggtttcctcctagtgaagacaacatggttagcaacaactaccttagagaggttactgatctcaagcccaaacaaggaggtggcaagtttgctgttcttcaccttcgctttgacaaggatatggctgctcattcagcctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71601" stop="69875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71382" g_stop="71372" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="215" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="486" r_length="271" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70198" g_stop="70175" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="510" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E481598" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71382" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="70175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCAGCCTGT</genome_strand>
        <mrna_strand>CAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATCGCTGCCATAGCACCATTTTCTCACCGGCTGACGTTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCGCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTGAGGTTTCCTCCTAGTGAAGACAACATGGTTAGCAACAACTACCTTAGAGAGGTTACTGATCTCAAGCCCAAACAAGGAGGTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG...........................................................................................................................................................................................................................................GATATGGCTGCTCATTCAGCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573886" ref_strand="+" ref_description="SGN-E573886 [33266]">
      <seq>cctcgtgccgggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaagtgtcacaactttggacacctttggaacaccaagggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagatgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgtagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaatcgctgccatagcaccattttctcaccggctgacgtttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttccgcacatcagacaactcggggatgcccttatcactcgcctgaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatcttaagcccaaacaaggaggtggcaagttcgctgttcttcaccttcggtttgaccacggatattggtggtcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="72334" stop="70131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72042" g_stop="71992" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.863"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.86"/>
            <acceptor a_prob="0.982" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="134" r_length="83" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="205" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="294" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="498" r_length="204" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70704" g_stop="70434" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="770" r_length="272" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.900" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70198" g_stop="70181" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="788" r_length="18" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E573886" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72042" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70434"/>
          <exon e_start="70198" e_stop="70181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAA-GGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGA-CAAGGTAAAAACACCTTACTGTTGTTGAACTACCTATCCTGCAATATCTCCCGATCAAATATTAGTACTTCCACTTTCCTGAAAAAATCAGCTTTCCTTTACTGCCTGTTAAAGGCAATATAACACTACTTATTGATGAATATATCTCAGTACCGTATTTTTGCTGTATTTTTTAGTTAATTTTACTCCACCCAAAGTGTCACATGATTTAAGAACCTTTGGACTTGTTATCTCTCCAGGATATGGCTGCTCATTCA</genome_strand>
        <mrna_strand>CCTCGTGCCGGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAAGTGTCACAACTTTGGACACCTTTGGAACACCAAGGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGATGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATCGCTGCCATAGCACCATTTTCTCACCGGCTGACGTTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCGCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTGAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTTAAGCCCAAACAAGGAGGTGGCAAGTTCGCTGTTCTTCACCTTCGGTTTGACCACG...........................................................................................................................................................................................................................................GATATTGGTGGTCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271017" ref_strand="+" ref_description="SGN-E271017 [cLEM-22-J15]">
      <seq>gcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcctagtgaagacaacatggttagtaacaactaccttagagaggttactgatctaaagcccaaacaaggagttggcaagtttgctgttcttcaccttcgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71006" stop="70139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70710" g_stop="70439" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E271017" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70710" e_stop="70439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTG</genome_strand>
        <mrna_strand>GCAGAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410231" ref_strand="+" ref_description="SGN-E410231 [PPI-16-M16]">
      <seq>gatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacacctttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgtagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaatcgctgccatagcaccattttctcaccggctgacgtttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttccgcacatcagaacactcggagatgcccttatcactcgcctgatgtttcctcctagtgaagacnacatggttagcaacaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="72354" stop="70210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="145" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="216" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="305" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="509" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70704" g_stop="70510" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="704" r_length="195" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E410231" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTA</genome_strand>
        <mrna_strand>GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATCGCTGCCATAGCACCATTTTCTCACCGGCTGACGTTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCGCACATCAGAACACTCGGAGATGCCCTTATCACTCGCCTGATGTTTCCTCCTAGTGAAGACNACATGGTTAGCAACAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370386" ref_strand="+" ref_description="SGN-E370386 [TUS-28-K11]">
      <seq>cctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagaggttagtcacaacattgttttttttgaagattttggtctagttgtatgatagtcatgtaaactgtgttcagtctctcaacccacccgtatgacaaagtacatgtataattggtaaattactggcaggatttagtgctcaaaacttaagggaattctacaaaagttccattgcccagtattttactattcattttaagttgtatgttcccttaaaccaaaaatttaagttaggcatggactaaacattatgtgtttgatttatttcttgatatgatcatattttgttcgttcagttattagcttctgaaggtagtaattctcttatcagccttttgctggaatttgtgacattgctttgtatattaatattttatgaatggatcagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttcctcacatcagacaactcggggatgcccttatcactcgccttaggtttcctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71516" stop="70239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71216" g_stop="70539" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E370386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71216" e_stop="70539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCT</genome_strand>
        <mrna_strand>CCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471762" ref_strand="+" ref_description="SGN-E471762 [cSTB-25-K22]">
      <seq>gaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgtagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaatcgctgccatagcaccattttctcaccggctgacgtttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttccgcacatcagacaactcggggatgcccttatcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71728" stop="70256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71428" g_stop="71372" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="261" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70704" g_stop="70556" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="410" r_length="149" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E471762" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71428" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTC</genome_strand>
        <mrna_strand>GAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATCGCTGCCATAGCACCATTTTCTCACCGGCTGACGTTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCGCACATCAGACAACTCGGGGATGCCCTTATCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332097" ref_strand="+" ref_description="SGN-E332097 [cTOD-16-G2]">
      <seq>caaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgtagagtcaacttttcagcattggcctatgttcctcacatcagacaactcggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="72341" stop="70269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72041" g_stop="71992" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="132" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="203" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="292" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="496" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70704" g_stop="70569" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="632" r_length="136" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E332097" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72041" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGAT</genome_strand>
        <mrna_strand>CAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAGAGTCAACTTTTCAGCATTGGCCTATGTTCCTCACATCAGACAACTCGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410262" ref_strand="+" ref_description="SGN-E410262 [PPI-16-D13]">
      <seq>gatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacacctttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgtagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaatcgctgccatagcaccattttctcaccggctgacgtttgacaacatgcccaagtacctccaacacctacgatgtaaagtcaactttcaagcattggcctttgttccgcacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="72354" stop="70284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="145" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="216" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="305" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="509" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70704" g_stop="70584" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="630" r_length="121" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E410262" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATC</genome_strand>
        <mrna_strand>GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATCGCTGCCATAGCACCATTTTCTCACCGGCTGACGTTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCGCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247316" ref_strand="+" ref_description="SGN-E247316 [cLEF-46-H23]">
      <seq>tctgatttgaatgctccaaaattcaagcactcacttcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgcccaagtacctccaacacctacgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="72354" stop="70323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="66" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="148" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="219" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="308" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="512" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70704" g_stop="70623" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="594" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E247316" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGT</genome_strand>
        <mrna_strand>GATTTGAATGCTCCAAAATTCAAGCACTCACTTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272059" ref_strand="+" ref_description="SGN-E272059 [cLEM-8-D12]">
      <seq>cctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagaggttagtcacaacattgttttttttgaagattttggtctagttgtatgatagtcatgtaaactgtgttcagtctctcaacccacccgtatgacaaagtacatgtataattggtaaattactggcaggatttagtgctcaaaacttaagggaattctacaaaagttccattgcccagtattttactattcattttaagttgtatgttcccttaaaccaaaaatttaagttaggcatggactaaacattatgtgtttgatttatttcttgatatgatcatattttgttcgttcagttattagcttctgaaggtagtaattctcttatcagccttttgctggaatttgtgacattgctttgtatattaatattttatgaatggatcagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="71516" stop="70347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71216" g_stop="70647" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E272059" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71216" e_stop="70647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCC</genome_strand>
        <mrna_strand>CCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311918" ref_strand="+" ref_description="SGN-E311918 [cTOA-15-F16]">
      <seq>actcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctgtactgcagagttatggaattgctgccatagctccattttctcaccgactgacatttgacaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="72329" stop="70350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72029" g_stop="71992" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="120" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="191" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="280" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71292" g_stop="71089" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="484" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70704" g_stop="70650" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="539" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E311918" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72029" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71089"/>
          <exon e_start="70704" e_stop="70650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATG</genome_strand>
        <mrna_strand>ACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590842" ref_strand="+" ref_description="SGN-E590842 [44636]">
      <seq>ctttatattttcattaggggttgagccaaaaaccaaaaatacactacagcaacaagaagaagagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgactgtttactttattacttttagccatgcctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcaaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacacctttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagacgacgttgctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgtagctatccgacctacaagaatcaagactgctccagttcatgcttcagcaaattggtatttagagaatgtgtcacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74286" stop="70799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73986" g_stop="73806" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="242" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="324" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="395" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="484" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71292" g_stop="71099" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="678" r_length="194" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E590842" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73986" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTG</genome_strand>
        <mrna_strand>CTTTATATTTTCATTAG-GGGTTGAGCCAAAAACCAAAAATACACTACAGCAACAAGAAGAAG-AGAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACTGTTTACTTTATTACTTTTAGCCATGCCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCAAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTTGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584714" ref_strand="+" ref_description="SGN-E584714 [10541]">
      <seq>cttttctttatatatgctttatattttcattaggggttgagccaaaaaccaaaaatacactacagcaacaagaagaagagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgactgtttactttattacttttagccatgcctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcaaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacacctttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagacgacgttgctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgtagctatccgacctacaagaatcaagactgctccagttcatgcttcagacaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74301" stop="70823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74001" g_stop="73806" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="258" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="340" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="411" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="500" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71292" g_stop="71123" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="671" r_length="171" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E584714" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74001" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTTTAT-TTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAG-CAAATT</genome_strand>
        <mrna_strand>CTTTTCTTTATATATGCTTTATATTTTCATTA-GGGGTTGAGCCAAAAACCAAAAATACACTACAGCAACAAGAAGAAG-AGAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACTGTTTACTTTATTACTTTTAGCCATGCCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCAAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTTGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATGGCGTAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGACAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327450" ref_strand="+" ref_description="SGN-E327450 [cTOC-19-H9]">
      <seq>aaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaagggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaagcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccatacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgacctacaagaatcaagactgctccagttcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74366" stop="70833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74066" g_stop="73806" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="324" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="406" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71656" i_length="152">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71655" g_stop="71588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="474" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="563" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71292" g_stop="71133" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="723" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E327450" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74066" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71655" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCT</genome_strand>
        <mrna_strand>AAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAAGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAAGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA........................................................................................................................................................TACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697222" ref_strand="+" ref_description="SGN-E697222 [FA01AG01]">
      <seq>gaggagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccatacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatcttngatgtggatcacttcatcaatgcattgaaagccgacgtagctatagtcanagagttgcctgatgaattctcttggagcacacgagaatattatggcatagctatccgaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74234" stop="70862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73939" g_stop="73806" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="196" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="278" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71656" i_length="152">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71655" g_stop="71588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="346" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="435" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71292" g_stop="71162" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="566" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E697222" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73939" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71655" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTA</genome_strand>
        <mrna_strand>GAG-GAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA........................................................................................................................................................TACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTNGATGTGGATCACTTCATCAATGCATTGAAAGCCGACGTAGCTATAGTCANAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585209" ref_strand="+" ref_description="SGN-E585209 [66928]">
      <seq>cccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgttttttttctttcttgtattcctttctttcaagtttttgagagtttttaggcacacccttttctttatatgctttatattttcattaggggttgagccaaaaaccaaaaatacactgcagcaacaagaagaagagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgactgtttactttactacttttagccatgcatcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacacctttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttggctgatgaattctcttggagcacgcgagaatattatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74463" stop="70879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74163" g_stop="73806" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="418" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="500" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="571" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="660" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71292" g_stop="71180" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="773" r_length="113" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E585209" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74163" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATG</genome_strand>
        <mrna_strand>CCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGTTTTTTTTCTTTCTTGTATTCCTTTCTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTA-TATGCTTTATATTTTCATTA-GGGGTTGAGCCAAAAACCAAAAATACACTGCAGCAACAAGAAGAAG-AGAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCCATGCATCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGGCTGATGAATTCTCTTGGAGCACGCGAGAATATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413289" ref_strand="+" ref_description="SGN-E413289 [STM-17-L21]">
      <seq>actttattacttcctagccatgcctcacccaccattctttctgatttgaatgctccaaaattcacgcactcacgtcttgcaaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacacctttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagacgacgttgctatagtcaaagagttgcctgatgaattctcttggagcacgcgagaatattatggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74146" stop="70876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73846" g_stop="73806" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.85"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="105" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="187" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="258" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="347" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71292" g_stop="71180" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="460" r_length="113" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E413289" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73846" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTACTACTT-TTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATG</genome_strand>
        <mrna_strand>ACTTTATTACTTCCTAGCCATGCCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCACGCACTCACGTCTTGCAAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTTGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACGCGAGAATATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333722" ref_strand="+" ref_description="SGN-E333722 [cTOD-22-O7]">
      <seq>tgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaatcctgtttggcaaattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74443" stop="70899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74143" g_stop="73806" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="401" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="483" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="554" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="641" r_length="87" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71292" g_stop="71199" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="735" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E333722" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74143" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGG</genome_strand>
        <mrna_strand>TGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGT-AATCCTGTTTGGCAA-ATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333842" ref_strand="+" ref_description="SGN-E333842 [cTOD-24-C17]">
      <seq>ctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttgggacaccaaggatggaaaccttgtactanatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaatctgaatgccacacttgtgatccctcagttggaaagtaatcctgtttggcaagattcaagctcattcgaggatatncttgatgtggatcactttcatcatgcattgaaagacgacgtagctatagtcaaagagttgcctgatgaattctcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74383" stop="70899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74083" g_stop="73806" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="341" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="423" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="494" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="582" r_length="88" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="0.94"/>
            <acceptor a_prob="0.986" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71292" g_stop="71199" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="676" r_length="94" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E333842" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74083" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCAC-TTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGG</genome_strand>
        <mrna_strand>CTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGGACACCAAGGATGGAAACCTTGTACTANATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAA-TCTGAATGCCACACTTGTGATCCCTCAGTTGGAAAGTAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATNCTTGATGTGGATCACTTTCATC-ATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437059" ref_strand="+" ref_description="SGN-E437059 [cSTA-2-F19]">
      <seq>ttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaagtgtcacaactttggacacctttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattgaaagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="72354" stop="70939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="67" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="149" r_length="82" r_score="0.915"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="220" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="309" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71292" g_stop="71239" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="363" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E437059" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGA</genome_strand>
        <mrna_strand>GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAAGTGTCACAACTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312314" ref_strand="+" ref_description="SGN-E312314 [cTOA-5-E3]">
      <seq>ccttttttttattttgctttatattttcattagggcgggtgagccaggataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaagcttgtactaaatctgatgctgcatccatacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggatatctttgatgtggatcacttcatcaatgcattgaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74302" stop="70942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74002" g_stop="73806" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="262" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="343" r_length="81" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71656" i_length="152">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71655" g_stop="71588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="411" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="500" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71292" g_stop="71242" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="551" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E312314" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74002" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71655" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTCTTTATTTTGCTTTATATTTTCATTAGGG-GGGTGAGCCA-AATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGA</genome_strand>
        <mrna_strand>CCTTTTTTTTATTTTGCTTTATATTTTCATTAGGGCGGGTGAGCCAGGATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGG-AAGCTTGTACTAAATCTGATGCTGCATCCA........................................................................................................................................................TACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453420" ref_strand="+" ref_description="SGN-E453420 [cSTS-19-N16]">
      <seq>cataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattcctttctttcaagtttttgagagtttttaggcacacccttttctttatttgctttatatattttcattaggggttgagccaaataccaaaaatacactgcagcaagaagaagaagagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgactgtttactttattacttttagccatgcctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcaaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacacctttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaatcctgtttggcaagattcaagctcattcgaggacatctttgatgtggatcacttcatcaatgcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74436" stop="70946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74136" g_stop="73806" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="393" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="475" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="546" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="635" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71292" g_stop="71246" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="682" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E453420" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74136" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTT-TATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGA</genome_strand>
        <mrna_strand>CATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTTCTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTGCTTTATATATTTTCATTA-GGGGTTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAG-AGAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACTGTTTACTTTATTACTTTTAGCCATGCCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCAAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGTGGATCACTTCATCAATGCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596730" ref_strand="+" ref_description="SGN-E596730 [40219]">
      <seq>gtctttttgtggttcttttgactgtttactttattacttttaggccatgcctcacccaccattctttctgatattgaatgctccaagaattcaggcactcacgtcttgcaaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacaccgtttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgccagttgtcgttgccaaaattctgaatgccacacttgtgatcgctcagttggaagtaaatcctgctaaggcaagattcaagctcattcgaggacatctttgatgctggatcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74173" stop="71053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73873" g_stop="73806" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="134" r_length="65" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="217" r_length="83" r_score="0.915"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="288" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71372" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="379" r_length="91" r_score="0.921"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79">
            <donor d_prob="0.970" d_score="0.90"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71292" g_stop="71260" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="413" r_length="34" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E596730" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73873" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71372"/>
          <exon e_start="71292" e_stop="71260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTA-GCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGAT-TTGAATGCTCCAA-AATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACC-TTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATG-CAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTG-TTTGGCAAGATTCAAGGTATCTTAAGTATAGTGCTAAAATTGGTTTTCTTTCAACTTTTAAAAACATATACAAGTTATCGTCCTCTTTCCTACAGCTCATTCGAGGATATCTTTGATG-TGGATCACTT</genome_strand>
        <mrna_strand>GTCTTTTTGTGGTTCTTTTGACTGTTTACTTTATTACTTTTAGGCCATGCCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAATGCTCCAAGAATTCAGGCACTCACGTCTTGCAAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCGTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCGCTCAGTTGGAAGTAAATCCTGCTAAGGCAAGATTCAAG...............................................................................CTCATTCGAGGACATCTTTGATGCTGGATCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355876" ref_strand="+" ref_description="SGN-E355876 [cLHT-12-O7]">
      <seq>cttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttttttatttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagaggaagcagcatgagtggaaatcataaaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatgcctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacagcgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaattctgatgctgcatccacagttcctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagacgatggggatctgtgatgcanttgacgttgccaaaattctgaatgccacacttgtgatccctcagttggaagtaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74373" stop="71092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74073" g_stop="73806" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="330" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="412" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="483" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71392" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="552" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E355876" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74073" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAAT</genome_strand>
        <mrna_strand>CTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTTTTTA-TTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGGAAGCAGCATGAGTGGAAATCATAAAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGCCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAGCGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAATTCTGATGCTGCATCCA.....................................................................................................................................................CAGTTCCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGACGATGGGG...............................................................................................................................ATCTGTGATGCANTTGACGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729401" ref_strand="+" ref_description="SGN-E729401 [LA20DG11]">
      <seq>tgaaaaaagatgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccctcagctggaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74371" stop="71095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74071" g_stop="73806" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="328" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="410" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="481" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71395" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="547" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E729401" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74071" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTA</genome_strand>
        <mrna_strand>TGAAAAAAGA-TGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGCTGGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569608" ref_strand="+" ref_description="SGN-E569608 [14069]">
      <seq>ctttctttcaagtctttgagagtttttaggcacacccttttctttatatgctttatatattttcattaggggttgagccaaataccaaaaatacactgcagcaagaagaagaagagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgactgtttactttattacttttagccatgcctcanccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcaaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacacctttggaacaccaagggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgcacttgtcgttgccaaaattctgaatgccacacttgtgatccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74337" stop="71106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74037" g_stop="73806" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="294" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="377" r_length="83" r_score="0.915"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="448" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71406" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="503" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E569608" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74037" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTT-TATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAA-GGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTC</genome_strand>
        <mrna_strand>CTTTCTTTCAAGTCTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATATGCTTTATATATTTTCATTA-GGGGTTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAG-AGAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACTGTTTACTTTATTACTTTTAGCCATGCCTCANCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCAAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCTTTGGAACACCAAGGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCACTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247911" ref_strand="+" ref_description="SGN-E247911 [cLEF-47-J19]">
      <seq>gagataggtgcccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74475" stop="71107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74175" g_stop="73806" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="433" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="515" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="586" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71407" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="640" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E247911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74175" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCT</genome_strand>
        <mrna_strand>GAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445407" ref_strand="+" ref_description="SGN-E445407 [cSTA-45-O2]">
      <seq>aagagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgactgtttactttattacttttagccatgcctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcaaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacacctttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccatacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctgaatgccacacttgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74223" stop="71111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73926" g_stop="73806" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="183" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="265" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71656" i_length="152">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71655" g_stop="71588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="333" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71411" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="383" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E445407" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73926" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71655" e_stop="71588"/>
          <exon e_start="71460" e_stop="71411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGAT</genome_strand>
        <mrna_strand>AAGAGAAGAA-GCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACTGTTTACTTTATTACTTTTAGCCATGCCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCAAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA........................................................................................................................................................TACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581931" ref_strand="+" ref_description="SGN-E581931 [7564]">
      <seq>ttatatgcttatattttcattaggggttgagccaaaaacaaaaatacactgcagcaacaagaagaagagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgactgtttactttactacttttagccatgcatcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacacctttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgccaaaattctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74294" stop="71127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73994" g_stop="73806" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="247" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="329" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="400" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71427" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="434" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E581931" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73994" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGA</genome_strand>
        <mrna_strand>TTAT-ATGC-TTATATTTTCATTA-GGGGTTGAGCCAAA-AACAAAAATACACTGCAGCAACAAGAAGAAG-AGAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCCATGCATCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302380" ref_strand="+" ref_description="SGN-E302380 [cLEW-27-O20]">
      <seq>aattgataaagacaacccacccccaaagcatttacacttcacaaaaactaatttttgtagcagtaaaatcacttcagtgtggcagctcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgcagttgtcgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74641" stop="71138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74341" g_stop="74255" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74254" i_stop="73937" i_length="318">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73936" g_stop="73806" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="218" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="281" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="363" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="434" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71460" g_stop="71438" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="457" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E302380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74341" e_stop="74255"/>
          <exon e_start="73936" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGCAGTTGTCGTTGC</genome_strand>
        <mrna_strand>AATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCT..............................................................................................................................................................................................................................................................................................................................CAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGCAGTTGTCGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444391" ref_strand="+" ref_description="SGN-E444391 [cSTA-42-D8]">
      <seq>gaagataggtgccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctcttacttccttgaaaaaagattgctttttttctttcttgtattcctttctttcaagtttttgagagtttttaggcacacccttttctttatatatgctttatattttcattaggggttgagccaaaaaccaaaaatacactacagcaacaagaagaagagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgactgtttactttattacttttagccatgcctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcaaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacacctttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggaggactaaatcaacagaggatggggatctgtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74477" stop="71276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74177" g_stop="73806" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="432" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="514" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="585" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71450" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="596" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E444391" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74177" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTAT-TTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGC</genome_strand>
        <mrna_strand>GA-AGATAGGTG-CCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTACTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTTCTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATATATGCTTTATATTTTCATTA-GGGGTTGAGCCAAAAACCAAAAATACACTACAGCAACAAGAAGAAG-AGAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACTGTTTACTTTATTACTTTTAGCCATGCCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCAAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGAGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321101" ref_strand="+" ref_description="SGN-E321101 [cTOB-13-O1]">
      <seq>agagataggtgcccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74476" stop="71276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74176" g_stop="73806" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="434" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="516" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71588" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="587" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71450" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="598" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E321101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74176" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71588"/>
          <exon e_start="71460" e_stop="71450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATGC</genome_strand>
        <mrna_strand>AGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329266" ref_strand="+" ref_description="SGN-E329266 [cTOD-2-J4]">
      <seq>ccatgtgatatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaagcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggttttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccatacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatcaacagaggatggggatctgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74462" stop="71280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74162" g_stop="73806" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="420" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="502" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71656" i_length="152">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.807" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71655" g_stop="71588" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="570" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71460" g_stop="71451" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="580" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E329266" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74162" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71655" e_stop="71588"/>
          <exon e_start="71460" e_stop="71451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGGGTGCGTATTATGATTCCTTTGTTTGATTGTTCATAGAAACAACATTAATGAATAATGCTCAACTCCTTTAATTATAGAAACAAATTGTTTGACCCTTCATTACTGACATCTATATTTCTTGGAGAAGATCTGTGATG</genome_strand>
        <mrna_strand>CCATGTGATATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAAGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGTTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA........................................................................................................................................................TACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG...............................................................................................................................ATCTGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294296" ref_strand="-" ref_description="SGN-E294296 [cLET-14-F2](-)">
      <seq>aaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctgggcttattgaggatattttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74366" stop="71302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74066" g_stop="73806" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="324" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="406" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71602" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="463" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E294296" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294296" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74066" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATC</genome_strand>
        <mrna_strand>AAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGGCTTATTGAGGATATTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294295" ref_strand="+" ref_description="SGN-E294295 [cLET-14-F2]">
      <seq>aaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctgggcttattgaggatattttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatggtggactaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74366" stop="71302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74066" g_stop="73806" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="324" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="406" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71602" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="463" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E294295" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74066" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATC</genome_strand>
        <mrna_strand>AAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGGCTTATTGAGGATATTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479274" ref_strand="+" ref_description="SGN-E479274 [cSTD-9-G6]">
      <seq>gtccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgttttttttctttcttgtattcctttctttcaagtttttgagagtttttaggcacacccttttctttatatgctttatattttcattaggggttgagccaaaaaccaaaaatacactgcagcaacaagaagaagagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgactgtttactttactacttttagccatgcatcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacacctttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttcaagtgttccttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74466" stop="71314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74166" g_stop="73806" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="421" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="503" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71614" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="548" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E479274" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74166" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATG</genome_strand>
        <mrna_strand>GTCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGTTTTTTTTCTTTCTTGTATTCCTTTCTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTA-TATGCTTTATATTTTCATTA-GGGGTTGAGCCAAAAACCAAAAATACACTGCAGCAACAAGAAGAAG-AGAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCCATGCATCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569353" ref_strand="+" ref_description="SGN-E569353 [13778]">
      <seq>ggcacacccttttctttatatgctttatattttcattaggggttgagccaaaaaccaaaaatacactgcagcaacaagaagaagagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttattcgtgggttcttttcgactgtttactttactacttttagccatgcatcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacaactttggacagctttggaacaccaaggatggaaaccttgttctgaatctgatgctgcctccacagtacctgaaaaatctgagggatacgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74309" stop="71329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74009" g_stop="73806" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="268" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="350" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71629" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="380" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E569353" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74009" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTC-TTATT-GT-GGTTCTTTT-GACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTGAGGGATACGTTC</genome_strand>
        <mrna_strand>GGCACACCCTTTTCTTTA-TATGCTTTATATTTTCATTAGGG-GTTGAGCCAAAAACCAAAAATACACTGCAGCAACAAGAAGAAGA-GAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTATTCGTGGGTTCTTTTCGACTGTTTACTTTACTACTTTTAGCCATGCATCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACAGCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGCTGCCTCCA.....................................................................................................................................................CAGTACCTGAAAAATCTGAGGGATACGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272518" ref_strand="+" ref_description="SGN-E272518 [cLEM-21-K11]">
      <seq>agagataggtgcccccatgtgagatgcttttactgaggctcatagtgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatccacagtacctgaaaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74476" stop="71341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74176" g_stop="73806" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="434" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="516" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71641" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="534" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E272518" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74176" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATCTG</genome_strand>
        <mrna_strand>AGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAGTGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA.....................................................................................................................................................CAGTACCTGAAAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358082" ref_strand="+" ref_description="SGN-E358082 [cLHT-23-O19]">
      <seq>ttgatttctttctctctttcttccttgaaaaaagatggctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttatttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagaggaagcagcatgagtggaaatcataaaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatgcctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacagcgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaattctgatgctgcatccattcctgaaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74396" stop="71506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74096" g_stop="73806" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="353" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="435" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71656" i_length="152">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.807" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71655" g_stop="71643" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="448" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E358082" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74096" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71655" e_stop="71643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTGAAAAATC</genome_strand>
        <mrna_strand>TTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATGGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTA-TTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGGAAGCAGCATGAGTGGAAATCATAAAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGCCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAGCGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAATTCTGATGCTGCATCCA........................................................................................................................................................TTCCTGAAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341021" ref_strand="+" ref_description="SGN-E341021 [cTOF-5-H14]">
      <seq>aattggtgtaaacacctttgcatcttgataattgataaagacaacccacccccaaagcatttacacttcacaaaaactaatttttgtagcagtaaaatcacttcagtgtggcagctgtaagcttgctgtttgcttgtttggttttattatatgcattgatttttggtatatgtgttgatattatatggaaggggagagataggtgcccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgctgcatncacagtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74670" stop="71506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74370" g_stop="73806" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="628" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71808" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="710" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71658" g_stop="71650" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="719" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E341021" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74370" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71808"/>
          <exon e_start="71658" e_stop="71650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGGTGTAAACACCTTTGCATCTTGATAATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCAGTGAGTGTCTATGATCACATATTCTGATACATCTAAAATTTACATCTAGTTTGTGAAGGCTTGCTGTTAAGCAATAACTCGATTGAGCATCAGCGCGATCTTGCCTTCTAATTTTCCAATGACTAATTACTGTTCCTTGCACTATGCAGCAGTACCTG</genome_strand>
        <mrna_strand>AATTGGTGTAAACACCTTTGCATCTTGATAATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATNCA.....................................................................................................................................................CAGTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325797" ref_strand="+" ref_description="SGN-E325797 [cTOC-12-C22]">
      <seq>ataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacaccaaggatggaaaccttgtactaaatctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74435" stop="71516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74135" g_stop="73806" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="393" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71816" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="467" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E325797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74135" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGC</genome_strand>
        <mrna_strand>ATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447325" ref_strand="+" ref_description="SGN-E447325 [cSTA-26-E7]">
      <seq>tggcccctcttgactcttcctactgggtcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattcctttctttcaagtttttgagagtttttaggcacacccttttctttaaatgctttatattttcattaggggttgagccaaaaaccaaaaatacactgcagcaagaagaagaggagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgaccgtttactttactacttttagccatgcctcacccaccattctttctgatttgaatgctccaaaattcaggcactcgcgtcttgcgaagagtgctataccacgccaaacttccaatgaagaacagtcacaactttggacacctttggaacaccaaggatggaaaccttgttctgaatctgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74425" stop="71516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74125" g_stop="73806" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="380" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71816" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="454" r_length="74" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E447325" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74125" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGC</genome_strand>
        <mrna_strand>TGGCCCCTCTTGACTCTTCCTACTGGGTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTTCTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTA-AATGCTTTATATTTTCATTA-GGGGTTGAGCCAAAAACCAAAAATACACTGCAGCAAGAAGAAG-AGGAGAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACCGTTTACTTTACTACTTTTAGCCATGCCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCGCGTCTTGCGAAGAGTGCTATACCACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACAACTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTTCTGAATCTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365627" ref_strand="+" ref_description="SGN-E365627 [cLPT-12-K16]">
      <seq>gatattggcccctctgggctctttctactgattcttgatttcttcctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaagcacacccttttctttatttgctttatatttcattagggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagaggaagcagcatgagtggaaatcataaaggagggggtgctatggctggttttattgtggttcttttgactgtttactttactacttttagctatgcctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcaaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74412" stop="71548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74130" g_stop="73806" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="385" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71848" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="427" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E365627" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74130" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACAC</genome_strand>
        <mrna_strand>GATATTGGCCCCTCTGGGCTCTTTCTACTGATTCTTGATTTCTTCCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAAGCACACCCTTTTCTTTA-TTTGCTTTATA-TTTCATTA-GGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGGAAGCAGCATGAGTGGAAATCATAAAGGAGGGGGTGCTATGGCTGGTTTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGCCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCAAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202154" ref_strand="+" ref_description="SGN-E202154 [cLEC-7-M16]">
      <seq>ggtgcccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccattctttctgatttgaatgctccaaaattcaggcactcacgtcttgcgaagagtgctatacaacgccaaacttccaatgaagaacagtcacggctttggacacctttggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74469" stop="71549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74169" g_stop="73806" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="71992" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="427" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71889" g_stop="71849" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="468" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E202154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74169" e_stop="73806"/>
          <exon e_start="72054" e_stop="71992"/>
          <exon e_start="71889" e_stop="71849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACTGTGCGTAAGACCTTATTGATCACACTCACTTGTTCCTCTTAAATTAACTTCTGTTCTCCTGTCATGAGTTTGTGTCTTGCTTGGTTTCTTCTATGTCTTTAGTCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACA</genome_strand>
        <mrna_strand>GGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT......................................................................................................TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417879" ref_strand="+" ref_description="SGN-E417879 [STM-26-G8]">
      <seq>catttacacttcacagaaactaatttttgtagcagtaaaatcacttcagagtggcagctgtaagcttgctgtttgcttctttggttttattatatgctttgatttttgataaatgtgttgatattatatggaagggagataggtgtccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattcctttctttcaagtttttgagagtttttaggcacacccttttctttaaatgctttatattttcattaggggttgagccaaaaaccaaaaatacactgcagcaagaagaagaggagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgaccgtttactttactacttttagccatgcctcacccaccattctttctgatttgaatgctccaaaattcaggcactcgcgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74613" stop="71718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74313" g_stop="73806" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="72018" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="539" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E417879" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74313" e_stop="73806"/>
          <exon e_start="72054" e_stop="72018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTG</genome_strand>
        <mrna_strand>CATTTACACTTCACAGAAACTAATTTTTGTAGCAGTAAAATCACTTCAGAGTGGCAGCTGTAAGCTTGCTGTTTGCTTCTTTGGTTTTATTATATGCTTTGATTTTTGATAAATGTGTTGATATTATATGGAA--GG-GAGATAGGTGTCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTTCTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTA-AATGCTTTATATTTTCATTA-GGGGTTGAGCCAAAAACCAAAAATACACTGCAGCAAGAAGAAG-AGGAGAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACCGTTTACTTTACTACTTTTAGCCATGCCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATTCAGGCACTCGCGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355800" ref_strand="+" ref_description="SGN-E355800 [cLHT-12-O11]">
      <seq>tttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttttttatttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagaggaagcagcctgagtggaaatcataaaggagggggtgctatggctggtcttattgtggttctcttgactgtgtactttactacttttagctatgcctcacccaccattctttctgatttgaatgctccaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74349" stop="71735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74049" g_stop="73806" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72054" g_stop="72035" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="263" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E355800" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74049" e_stop="73806"/>
          <exon e_start="72054" e_stop="72035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAGGGGATGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCATTGTACCTTTTTTTGTTTTCTTCTATTTGATGTTCTTTGTTGGTGGTCTAATGGAATTGAATGGATAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAACAGTAAAAATGCAATCTTTAAGTTTCTTCAATGTACCTTTTTTTTGGTTTTCTTCTATTTTGTGTTCTTTGTTGGTGGTCTAATGGAAATGAATGGAAAAGGTAGATGGAGAAAGAGGGTGATGGGAAAAAACAGTAAAAATGCAATCTTTAATGTGAAAAGGGTTTTAGAGTGAGATTTGGGGAATTTTGATGAAAATGGTCATCTAAAGATTATTCAATTTTACAAGGGTAGGTAAGGTGGTAAAAGATTTAGATCTTAGGGTCGGCAGAAATGGAAGTGTAGATAGTGGTAGGGTTAAGGGGGTGGACTTTTTCTATGTGAGGAGGTAAGCATTAGTCTTGATTTTTTTGGTGTATATGAGCAATTGTGGAAATATTTTATGATGCGGAAATTAGGGTTTGTTTACTAGCATTGTGGAGAAAGTTGTTTTTTGGTTAGGTGGATTTTGCTGATTTTGTAGTATCTTTTGATGTCAAGACAGCAGAAAAGTGGAGAAGAAACTGGCAAAAAACTATTGTTTTGGTATAATCTGTAAATCTAGCAGTGATTGGTGTTTAAGGAGTGATTTGGTGAGTTACTAAAGTTGGATCTGTTGACTTTGGACTAATTAAGTGTCATTTTTTTAATGGTCTGTTAATCCTTCCGGTATTAAACCCGTCTTCATGCCACTTGCCTGATCCCCAGGAATGGGAAGTTTTTGAATCTGTTGACTGTACAGTCTGTATGGAAGAATTCTCATGTCATTGAAAAGATCTGATTTTTGGGTAAATTTTTATATGTTTGGTAGATCAACACAGTCAAAGAAGTTGCTATTGCCTTGAAATAATAATTATTATATAATAATAATAATAAAATTCTGTTTGGTGCAAGATGATTATACTTCTCTTTCAAAGAGAGGAAATCATAATTTTCTGGGAAAAACATCACATGCATATCCTAGCCCAAAGAAGAGGAAACAATCATTCTTTTCTCAAGGGGCAAGCAATAAACTAATCATTTCTATCCATGGTTTTGGCTTCAATGTCAATTTGAATTATTGAAACTTGAAGGCTTGTGTAATGTTATACTATTTTATTGTCTCTACTGTTGCAGTTGCTACTGCATAAAAGGATGAAAAGGGGTAACTGAACTTAAGGTCTGCATAACTTTCTTGAATAGAACCTAACATGGCTAGCCAAGCAAACAGGATATAACCAAAGAAAATATCAAGGTTGCTATGATTATTCCCGAGTCTGAACTACATGGACTCTAAAAGGACTAGAGAAGTTCGATTAAACAACATATTTAGATTCTTTTGTTCCAATTCCAAAATTCCTTGTGATCTCTTTGACAAACTTTAGGAATCTGGTAAATTTGTGTCCATAAAGAATAAATTACGTTTTTTTGGTATGTATCTATGTAATTATTTCTGGAACAATTTAGAAAAAATTGATTGTATAGGCTTATTTGCATGTGCAGGATTTGAATGCTCCAAAATT</genome_strand>
        <mrna_strand>TTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTTTTTA-TTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGGAAGCAGCCTGAGTGGAAATCATAAAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTCTTGACTGTGTACTTTACTACTTTTAGCTATGCCTCACCCACCATTCTTTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAATGCTCCAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444257" ref_strand="+" ref_description="SGN-E444257 [cSTA-42-C10]">
      <seq>caagatctgtccctcatgtgagatgcttctactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctcttacttccttgaaaaaagattgctttttttctttcttgtattcctttctttcaagtttttgagagtttttaggcacacccttttctttatatatgctttatattttcattaggggttgagccaaaaaccaaaaatacactacagcaacaagaacaagagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgactgtttactttattacttttagccatgcctcacccaccattctttctgatttgaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74474" stop="73495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74176" g_stop="73806" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73805" i_stop="73669" i_length="137">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73668" g_stop="73657" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="381" r_length="12" r_score="0.333"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E444257" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74176" e_stop="73806"/>
          <exon e_start="73668" e_stop="73657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTAT-TTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCTGTAAGTTTAAGTTTCTTATCTTTTTCTTTAGATTTTGCTTGTCTTGTGTAATTGTAAACATAGTTATTTAGTCTTCTTGTTGTTTCTTGAATGTACCCTTTTCTTGTTTCCTTCTGTTTTGTGTTCTTTGTTGGTAGTTGGAGAAAGAG</genome_strand>
        <mrna_strand>CAAGATCTGT-CCCTCATGTGAGATGCTTCTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTACTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTTCTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATATATGCTTTATATTTTCATTA-GGGGTTGAGCCAAAAACCAAAAATACACTACAGCAACAAGAACAAG-AGAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACTGTTTACTTTATTACTTTTAGCCATGCCTCACCCACCATTCTTTCT.........................................................................................................................................GATTTGAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485361" ref_strand="+" ref_description="SGN-E485361 [cSTE-17-L23]">
      <seq>cttgatttctttctctcttacttccttgaaaaaagattgctttttttctttcttgtattcctttctttcaagtttttgagagtttttaggcacacccttttctttatatatgctttatattttcattaggggttgagccaaaaaccaaaaatacactacagcaacaagaagaagagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgactgtttactttattacttttagccatgcctcacccaccattctttctgatttgaatgctccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74397" stop="73491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74097" g_stop="73806" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E485361" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74097" e_stop="73806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTAT-TTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT</genome_strand>
        <mrna_strand>CTTGATTTCTTTCTCTCTTACTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTTCTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATATATGCTTTATATTTTCATTA-GGGGTTGAGCCAAAAACCAAAAATACACTACAGCAACAAGAAGAAG-AGAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACTGTTTACTTTATTACTTTTAGCCATGCCTCACCCACCATTCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447114" ref_strand="+" ref_description="SGN-E447114 [cSTA-24-H7]">
      <seq>tttacacttcacagaaactaatttttgtagccagtaaaatcacttcagagtggcagctgtaagccttgctgtttgcttctttggttttattatatgctttgatttttgataaatgtgttgatattatatggaagggagataggtgtccccatgtgagatgccttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattcctttctttcaagtttttgagagtttttaggcacacccttttctttaaatgctttatattttcattaggggttgagccaaaaaccaaaaatacactgcagcaagaagaagaggagaagaagcagcatgagtggaaatcatagaggaaggggtgctatggctggtctttttgtggttcttttgaccgtttactttactacttttagccatgcctcacccaccattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74611" stop="73509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74311" g_stop="73809" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E447114" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74311" e_stop="73809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACACTTCACAAAAACTAATTTTTGTAG-CAGTAAAATCACTTCAGTGTGGCAGCTGTAAG-CTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATG-CTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTT</genome_strand>
        <mrna_strand>TTTACACTTCACAGAAACTAATTTTTGTAGCCAGTAAAATCACTTCAGAGTGGCAGCTGTAAGCCTTGCTGTTTGCTTCTTTGGTTTTATTATATGCTTTGATTTTTGATAAATGTGTTGATATTATATGGAA--GG-GAGATAGGTGTCCCCATGTGAGATGCCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTTCTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTA-AATGCTTTATATTTTCATTA-GGGGTTGAGCCAAAAACCAAAAATACACTGCAGCAAGAAGAAG-AGGAGAAGAAGCAGCATGAGTGGAAATCATAGAGGAAGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACCGTTTACTTTACTACTTTTAGCCATGCCTCACCCACCATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245426" ref_strand="+" ref_description="SGN-E245426 [cLEF-53-N2]">
      <seq>taggtgcccccatgtgagatgcttttactgaggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctctttcttccttgaaaaaagattgctttttttctttcttgtattccttactttcaagtttttgagagtttttaggcacacccttttctttattttgctttatattttcattaggggggtgagccaaataccaaaaatacactgcagcaagaagaagaagaagagaaagcagcatgagtggaaatcatagaggagggggtgctatggctggtcttattgtggttcttttgactgtttactttactacttttagctatggctcacccaccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74471" stop="73512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74171" g_stop="73812" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E245426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74171" e_stop="73812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATT</genome_strand>
        <mrna_strand>TAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444256" ref_strand="+" ref_description="SGN-E444256 [cSTA-42-C8]">
      <seq>gaagataggtgccccatgtgagatgcttttactggggctcataatgatattggcccctctttactcttcctactgattcttgatttctttctctcttacttccttgaaaaaagattgctttttttctttcttgtattcctttctttcaagtttttgagagtttttaggcacacccttttctttatatatgctttatattttcattaggggttgagccaaaaaccaaaaatacactacagcaacaagaagaagagaagaagcagcatgagtggaaatcatagaggagggggtgctatggctggtctttttgtggttcttttgactgtttactttattacttttagccatgcctcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="74477" stop="73519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74177" g_stop="73819" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E444256" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74177" e_stop="73819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTAT-TTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACC</genome_strand>
        <mrna_strand>GA-AGATAGGTG-CCCCATGTGAGATGCTTTTACTGGGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTACTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTTCTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATATATGCTTTATATTTTCATTA-GGGGTTGAGCCAAAAACCAAAAATACACTACAGCAACAAGAAGAAG-AGAAGAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTTTTGTGGTTCTTTTGACTGTTTACTTTATTACTTTTAGCCATGCCTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462237" ref_strand="+" ref_description="SGN-E462237 [cPRO-11-E17]">
      <seq>cattattgacatagaataagtgaacgtattcgtcttctttacacaactgctaaccagcatcataggaggtgagttcggctttgtggcaggtattatatgtctatgatctgtaagattattcacttatctttgcattgaactagatattgctggcattggcatgagccttttgtctgtgtcaattgttgatttgagtttaggaagaaaagaaaacgaagctttttttcaaatttcattgtatcgttgggatataagttacatcatctgatatagtccccttgattaaagcatttggttgatgccttttcgacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="83828" stop="82908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83528" g_stop="83211" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="312" polyA_stop="321"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E462237" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83528" e_stop="83211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATTGACATAGAATAAGTGAACGTATTCGTCTTCTTTTACACAACTGCTAACCAGCATCATAGGAGGGAGGCGGGTTCGGCTTTGTGGCAGGTATTATATGTCTACGATCTCTAAGATTATTCACTTATCTTTGGCATTGAACTAGATATTGCTGGCATTGGCATGAGCCTTTTGTCTGTGTCAATTGTTAATTTGAGTTTAGGAAGAAAAGAAAACGAAGCTTTTTTCCAAATTTCATTGTATTGTTGGGATATAAGTTAAAATCCTCTGATATTGTCCCCTTGATTAAAGCATTTGGTTGATGCCTTTTCGAC</genome_strand>
        <mrna_strand>CATTATTGACATAGAATAAGTGAACGTATTCGTCTTC-TTTACACAACTGCTAACCAGCATCAT---A-GGAGGTGAGTTCGGCTTTGTGGCAGGTATTATATGTCTATGATCTGTAAGATTATTCACTTATCTTT-GCATTGAACTAGATATTGCTGGCATTGGCATGAGCCTTTTGTCTGTGTCAATTGTTGATTTGAGTTTAGGAAGAAAAGAAAACGAAGCTTTTTTTCAAATTTCATTGTATCGTTGGGATATAAGTT-ACATCATCTGATATAGTCCCCTTGATTAAAGCATTTGGTTGATGCCTTTTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462389" ref_strand="+" ref_description="SGN-E462389 [cPRO-11-D17]">
      <seq>cattattgacatagaataagtgaacgtattcgtcttctttacacaactgctaaccagcatcataggaggtgagttcggctttgtggcaggtattatatgtctatgatctgtaagattattcacttatctttgcattgaactagatattgctggcattggcatgagccttttgtctgtgtcaattgttgatttgagtttaggaagaaaagaaaacgaagctttttttcaaatttcattgtatcgttgggatataagttacatcatctgatatagtccccttgattaaagcatttggttgatgccttttcgacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="83828" stop="82908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83528" g_stop="83211" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="312" polyA_stop="321"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E462389" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83528" e_stop="83211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATTGACATAGAATAAGTGAACGTATTCGTCTTCTTTTACACAACTGCTAACCAGCATCATAGGAGGGAGGCGGGTTCGGCTTTGTGGCAGGTATTATATGTCTACGATCTCTAAGATTATTCACTTATCTTTGGCATTGAACTAGATATTGCTGGCATTGGCATGAGCCTTTTGTCTGTGTCAATTGTTAATTTGAGTTTAGGAAGAAAAGAAAACGAAGCTTTTTTCCAAATTTCATTGTATTGTTGGGATATAAGTTAAAATCCTCTGATATTGTCCCCTTGATTAAAGCATTTGGTTGATGCCTTTTCGAC</genome_strand>
        <mrna_strand>CATTATTGACATAGAATAAGTGAACGTATTCGTCTTC-TTTACACAACTGCTAACCAGCATCAT---A-GGAGGTGAGTTCGGCTTTGTGGCAGGTATTATATGTCTATGATCTGTAAGATTATTCACTTATCTTT-GCATTGAACTAGATATTGCTGGCATTGGCATGAGCCTTTTGTCTGTGTCAATTGTTGATTTGAGTTTAGGAAGAAAAGAAAACGAAGCTTTTTTTCAAATTTCATTGTATCGTTGGGATATAAGTT-ACATCATCTGATATAGTCCCCTTGATTAAAGCATTTGGTTGATGCCTTTTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707890" ref_strand="+" ref_description="SGN-E707890 [FA34BA08]">
      <seq>ccttgtgttacttaaattacctgattcattttggggaaattatagtgaaaagatttatagttggagtggtcttggttgtaagaatgtagcttgtttaaatgttaagaaattgaatagagattgtgctggtttttgatgttgtaagtagtggggggtatgagaagcaaagatatgttaagggtagagggaaaaatgatttcttgattgatgatgtattgggaatgctgggaaatggtgggggaattagaattggatttgatattggtggtggatctggtacatttgctgttagaatggctgaaaggaatgtgactatagttactgctacgttgaatgtcgatgcaccatttaacgagttcattgctgcacggggtgtattcccgttgtatttgagtttagatcatcggtttccctttcatgataatgtgtttgatttggtacatgtgggaaatgtattggatgtgagcggacgtcctgagaagttagagtttttagtgtttgatattgatagagttttgagggctggagggttgttttggttggataactttctttgttcaaatgaagacaagaaaactgcattaacgaggctgatcgaacgttttgggtacaaaaagcttaaatgggttgttggtgagaagatcaatgggtcgggaaaatctgaggtttatttgtctgctgttctacagaaaccagtaagagtttgatcgtatcgcggggtttctcatagaaaagctgtgcatgttcattattgacatagaataagtgaacgtattcgtcttcttttacacaactgctaaccagcatcataggagggaggcgggttcggctttgtggcaggtattatatgtctacgatctctaagattatcacttatctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="84574" stop="83091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84276" g_stop="83391" g_length="886"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="883" r_length="883" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E707890" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84276" e_stop="83391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGAAATTATAGTGAAAAGATTTATAGTTGGAGTGGTCTTGGTTGTAAGAATGTAGCTTGTTTAAATGTTAAGAAATTGAATAGAGATTGTGCTGGTTGTTTTGATGTTGTAAGTAGTGGGGGGTATGAGAAGCAAAGATATGTTAAGGGTAGAGGGAAAAATGATTTCTTGATTGATGATGTATTGGGAATGCTGGGAAATGGTGGGGGAATTAGAATTGGATTTGATATTGGTGGTGGATCTGGTACATTTGCTGTTAGAATGGCTGAAAGGAATGTGACTATAGTTACTGCTACGTTGAATGTCGATGCACCATTTAACGAGTTCATTGCTGCACGGGGTGTATTCCCGTTGTATTTGAGTTTAGATCATCGGTTTCCCTTTCATGATAATGTGTTTGATTTGGTACATGTGGGAAATGTATTGGATGTGAGCGGACGTCCTGAGAAGTTAGAGTTTTTAGTGTTTGATATTGATAGAGTTTTGAGGGCTGGAGGGTTGTTTTGGTTGGATAACTTTCTTTGTTCAAATGAAGACAAGAAAACTGCATTAACGAGGCTGATCGAACGTTTTGGGTACAAAAAGCTTAAATGGGTTGTTGGTGAGAAGATCAATGGGTCGGGAAAATCTGAGGTTTATTTGTCTGCTGTTCTACAGAAACCAGTAAGAGTTTGATCGTATCGCGGGGTTTCTCATAGAAAAGCTGTGCATGTTCATTATTGACATAGAATAAGTGAACGTATTCGTCTTCTTTTACACAACTGCTAACCAGCATCATAGGAGGGAGGCGGGTTCGGCTTTGTGGCAGGTATTATATGTCTACGATCTCTAAGATTATTCACTTATCTTTGG</genome_strand>
        <mrna_strand>CCTTGTGTTACTTAAATTACCTGATTCATTTTGGGGAAATTATAGTGAAAAGATTTATAGTTGGAGTGGTCTTGGTTGTAAGAATGTAGCTTGTTTAAATGTTAAGAAATTGAATAGAGATTGTGCTGG-T-TTTTGATGTTGTAAGTAGTGGGGGGTATGAGAAGCAAAGATATGTTAAGGGTAGAGGGAAAAATGATTTCTTGATTGATGATGTATTGGGAATGCTGGGAAATGGTGGGGGAATTAGAATTGGATTTGATATTGGTGGTGGATCTGGTACATTTGCTGTTAGAATGGCTGAAAGGAATGTGACTATAGTTACTGCTACGTTGAATGTCGATGCACCATTTAACGAGTTCATTGCTGCACGGGGTGTATTCCCGTTGTATTTGAGTTTAGATCATCGGTTTCCCTTTCATGATAATGTGTTTGATTTGGTACATGTGGGAAATGTATTGGATGTGAGCGGACGTCCTGAGAAGTTAGAGTTTTTAGTGTTTGATATTGATAGAGTTTTGAGGGCTGGAGGGTTGTTTTGGTTGGATAACTTTCTTTGTTCAAATGAAGACAAGAAAACTGCATTAACGAGGCTGATCGAACGTTTTGGGTACAAAAAGCTTAAATGGGTTGTTGGTGAGAAGATCAATGGGTCGGGAAAATCTGAGGTTTATTTGTCTGCTGTTCTACAGAAACCAGTAAGAGTTTGATCGTATCGCGGGGTTTCTCATAGAAAAGCTGTGCATGTTCATTATTGACATAGAATAAGTGAACGTATTCGTCTTCTTTTACACAACTGCTAACCAGCATCATAGGAGGGAGGCGGGTTCGGCTTTGTGGCAGGTATTATATGTCTACGATCTCTAAGATTA-TCACTTATCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700610" ref_strand="+" ref_description="SGN-E700610 [FA13CE05]">
      <seq>gccctactacaatcataaagtgaagcagccagcatcgaaaatctgtttgttttgagcaaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagttctaaatctacttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacccccatcatcatcttcttctcccacatactcacaagaacatatctttaatctcagaacaagtttctttaattctaagacagattgattcttcacaaaaaaaacttgcccaaatggaaaaagagcttttaggctatgaaagttttgatctttctagtcccaaagttccaaatgaagtgagaaatttcttgcaaccccatttgctgcctttgggtaaagattcaagaactgggattactgaaatggtagcttctattggacattcttgtgtgaaatctttagatttgctttctcagtttatgagttataaggttaatggtctttgtcctgatgattggagtcttgggcagaagctgattcttagtggctgtgagcctttgccaagaaggaggtgttttgctaagacaatacctaaggttggtttacttaaattacctgattcattttggggaaattatagtgaaaagatttatagttggagtggtcttggttgtaagaatgtagcttgtttaaatgttaagaaattgaatagagattgtgctggttgttttgatgttgcaagtagtggggggtaatgagaagcaaagatatgttaagggtagagggaaaaatgatttcttgaatgatgatgtattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="85198" stop="83755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84901" g_stop="84055" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="848" r_length="848" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E700610" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84901" e_stop="84055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGGAGGTGTTTTGCTAAGACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGAAATTATAGTGAAAAGATTTATAGTTGGAGTGGTCTTGGTTGTAAGAATGTAGCTTGTTTAAATGTTAAGAAATTGAATAGAGATTGTGCTGGTTGTTTTGATGTTGTAAGTAGTGGGGGGT-ATGAGAAGCAAAGATATGTTAAGGGTAGAGGGAAAAATGATTTCTTGATTGATGATGTATTGGG</genome_strand>
        <mrna_strand>GCCCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGGAGGTGTTTTGCTAAGACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGAAATTATAGTGAAAAGATTTATAGTTGGAGTGGTCTTGGTTGTAAGAATGTAGCTTGTTTAAATGTTAAGAAATTGAATAGAGATTGTGCTGGTTGTTTTGATGTTGCAAGTAGTGGGGGGTAATGAGAAGCAAAGATATGTTAAGGGTAGAGGGAAAAATGATTTCTTGAATGATGATGTATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314972" ref_strand="+" ref_description="SGN-E314972 [cTOA-31-C20]">
      <seq>actgatttagttgcttagttctactacaatcataaagtgaagcagccagcatcgaaaatctgtttgttttgagcaaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagttctaaatctacttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacccccatcatcatcttcttctcccacatactcacaagaacatatctttaatctcagaacaagtttctttaattctaagacagattgattcttcacaaaaaaaacttgcccaaatggaaaaagagcttttaggctatgaaagttttgatctttctagtcccaaagttccaaatgaagtgagaaatttcttgcaaccccatttgctgcctttgggtaaagattcaagaactgggattactgaaatggtagcttctattggacattcttgtgtgaaatctttagatttgctttctcagtttatgagttataaggttaatggtctttgtcctgatgattggagtcttgggcagaagctgattcttagtggctgtgagcctttgccaagaaggaggtgttttgctaaacaatacctaaggttggtttacttaaattacctgattcattttgggggaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="85218" stop="83934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84918" g_stop="84234" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E314972" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84918" e_stop="84234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGGAGGTGTTTTGCTAAGACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGAAATTAT</genome_strand>
        <mrna_strand>ACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGGAGGTGTTTTGCTAA-ACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGGAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700450" ref_strand="+" ref_description="SGN-E700450 [FA13AF05]">
      <seq>gttctactacaatcataaagtgaagcagccagcatcgaaaatctgtttgttttgagcaaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagttctaaatctacttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacccccatcatcatcttcttctcccacatactcacaagaacatatctttaatctcagaacaagtttctttaattctaagacagattgattcttcacaaaaaaaacttgcccaaatggaaaaagagcttttaggctatgaaagttttgatctttctagtcccaaagttccaaatgaagtgagaaatttcttgcaaccccatttgctgcctttgggtaaagattcaagaactgggattactgaaatggtagcttctattggacattcttgtgtgaaatctttagatttgctttctcagtttatgagttataaggttaatggtctttgtcctgatgattggagtcttgggcagaagctgattcttagtggctgtgagcctttgccaaaaaggacgtgtttttgctaagacaatacctaaggttggtttacttaaattacctgattccttttggggaaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="85201" stop="83934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84901" g_stop="84234" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E700450" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84901" e_stop="84234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGGAGGTG-TTTTGCTAAGACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGAAATTAT</genome_strand>
        <mrna_strand>GTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAAAAGGACGTGTTTTTGCTAAGACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCCTTTTGGGGAAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467458" ref_strand="+" ref_description="SGN-E467458 [cSTB-49-C23]">
      <seq>gtttggagcaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagctctaaatctgcttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacctccatcatcatctactactcccacatacccacaagaacatatctttaatctcagaacaagtttctttaattctaagagaaattgattcttcccaaaaaaaacttgcccaaatggaaaaagagcttttagggtatgaaagttttgatctttctagtcccaaagttccaaatgaagtgagaaatttcttgcaaccccatttgctccctttgggtaaagattcaagaactgggattactgaaatggttgcttctattggacattcttgtgtgaaatctttagatttgctttctcagtttatgaattataaggtaaatggtctttgtcctgatgattggagtcttgggcagaagctgattcttagtggctgtgagcctttgccaagaagaagatgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="85153" stop="83992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84853" g_stop="84292" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E467458" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84853" e_stop="84292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGGAGGTGTTTTGC</genome_strand>
        <mrna_strand>GTTTGGAGC-AAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGCTCTAAATCTGCTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCTCCATCATCATCTACTACTCCCACATACCCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGAGAAATTGATTCTTCCCAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGGTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTCCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTTGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAATTATAAGGTAAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGAAGATGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400468" ref_strand="+" ref_description="SGN-E400468 [cSTC-14-A21]">
      <seq>gacaaaacatagatcaccatattcacttgcctaatataaaattttatcccaaatctacctcttctttcccatctggcttattttcactgattaagtggctaactcctactacaatcatagaagtaaagcatcagcaccaagctgctgtttgtttggagcaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagctctaaatctgcttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacctccatcatcatctactactcccacatacccacaagaacatatctttaatctcagaacaagtttctttaattctaagagaaattgattcttcccaaaaaaaacttgcccaaatggaaaaagagcttttagggtatgaaagttttgatctttctagtcccaaagttccaaatgaagtgagaaatttcttgcaaccccatttgctccctttgggtaaagattcaagaactgggattactgaaatggttgcttctattggacattcttgtgtgaaatctttagatttgctttctcagtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="85306" stop="84090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85006" g_stop="84390" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E400468" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85006" e_stop="84390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAAACATTGATCACCAAATTTCACTTTCTTAATATTAAATTTCATCCCAAATCTACCTTCTCCTTCTCCATCTTAGCTTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATA-AAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATG</genome_strand>
        <mrna_strand>GACAAAACATAGATCACCATATT-CACTTGCCTAATATAAAATTTTATCCCAAATCTACC-TCTTCTTTCCCATC-TGGCTTATTTTCACTGATTAAGTGGCTAACTCCTACTACAATCATAGAAGTAAAGCA-TCAGCACCAAGCTGCTGTTTGTTTGGAGC-AAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGCTCTAAATCTGCTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCTCCATCATCATCTACTACTCCCACATACCCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGAGAAATTGATTCTTCCCAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGGTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTCCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTTGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324284" ref_strand="+" ref_description="SGN-E324284 [cTOC-4-O6]">
      <seq>ttattttcactgatttagttgcttagttctactacaatcataaagtgaagcagccagcatcgaaaatctgtttgttttgagcaaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagttctaaatctacttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacccccatcatcatcttcttctcccacatactcacaagaacatatctttaatctcagaacaagtttctttaattctaagacagattgattcttcacaaaaaaaacttgcccaaatggaaaaagagcttttaggctatgaaagttttgatctttctagtcccaaagttccaaatgaagtgagaaatttcttgcaaccccatttgctgcctttgggtaaagattcaagaactgggattactgaaatggtagcttctattggacattcttgtgtgaaatctttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="85226" stop="84110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84926" g_stop="84410" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E324284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84926" e_stop="84410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAG</genome_strand>
        <mrna_strand>TTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306727" ref_strand="+" ref_description="SGN-E306727 [cLEY-19-K22]">
      <seq>ttattttcactgatttagttgcttagttctactacaatcataaagtgaagcagccagcatcgaaaatctgtttgttttgagcaaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagttctaaatctacttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacccccatcatcatcttcttctcccacatactcacaagaacatatctttaatctcagaacaagtttctttaattctaagacagattgattcttcacaaaaaaaacttgcccaaatggaaaaagagcttttaggctatgaaaagtttgatctttctagtcccaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="85226" stop="84225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84926" g_stop="84525" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E306727" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84926" e_stop="84525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTT</genome_strand>
        <mrna_strand>TTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAAGTTTGATCTTTCTAGTCCCAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313035" ref_strand="+" ref_description="SGN-E313035 [cTOA-14-I3]">
      <seq>ttattttcactgatttagttgcttagttctactacaatcataaagtgaagcaggcagcatcgaaaatctgtttgttttgagcaaaaaatgggatctgtttctttgaaaataggtgatggaactgctagattcaagaaagctacatattgttcttcagttctaaatctacttatgcttttctctgttgttacaactaatctttttgctttatatgcttttacatcctcacccaaaaacccccatcatcatcttcttctcccacatactcacaagaacatatctttaatctcagaacaagtttctttaattctaagacagattgattcttcacaaaaaaaacttgcccaaatggaaaaagagcttttaggctatgaaagttttgatctttctagtcccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="85226" stop="84228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84926" g_stop="84528" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E313035" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84926" e_stop="84528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAA</genome_strand>
        <mrna_strand>TTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGGCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689229" ref_strand="+" ref_description="SGN-E689229 [t3_tus_80_K13]">
      <seq>attttctttcttttagaattctagtaagttcttttctaacaagaattttagtaagttcttttataacacgttatcagcacgaaattgctacttgcaaaggtactatataaatatttttatttaattcacatattctctcataattttcattatgtcgaatttatccaaacttgagtttgtggcattagatatttctggaaagaattatctttcatgggtactcgatgctgagattcacttggctgctaaaggtcttgatgccactattactcagggaaatgaagcatcgagtcaagataaggcgaaggctatgattttccttcgtcatcatcttgatgagggcctgaagattgaatatctgacagtgaaagatccacttgaattgtggactgatttaaaggggagatatgaccacctaaaggcaacagtgttgccaagagctcgttatgagtggatgcatttacggtttcaagattttaagaccgtaattgaatacaactctgctgtattcaggataacctcccagttgaaattatgtggggagactataaaagatgaggacatgttggaaaagacacttactacttttcatgcctcgaatgtgatattgcagcagcaatatcgtgaaaagggttttcagaaatattctgaactaatctcatgtcttttggtggctgagcaacataatgctcttttaatgaaaaatcatgaagctcgtcccactggagctgctccattaccggaggcaaatgcggtggaagcacgtgatcaatctgaagtaaaaagaaatgatcatcggggatataataatgcacggggacgtggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="85051" stop="86421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85359" g_stop="86121" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="828" r_length="764" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E689229" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85359" e_stop="86121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGTTATCAGCACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTGATTCACATATTCTCTCATAA-TTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAAGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACGGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGATTTCAAGATTTTAAGACCGTGATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGAGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTCCATGCCTCAAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTTTGAACTAATCTCATGTCTGTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTAAAGTAAAAAGAGATGATCATGGGGGATATAATAATGCACGGGGACGTGGCAA</genome_strand>
        <mrna_strand>AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAATTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAGGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACAGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGGTTTCAAGATTTTAAGACCGTAATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTCTGAACTAATCTCATGTCTTTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGCGGTGGAAGCACGTGATCAATCTGAAGTAAAAAGAAATGATCATCGGGGATATAATAATGCACGGGGACGTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206250" ref_strand="+" ref_description="SGN-E206250 [cLEC-29-L2]">
      <seq>acgaatttgctacttgcatagaaatctccaattgtcagttggattcaagatgagtaatggagatgtatacctttttcatagtgctactacacatacaatattaaaagaaaagaaaagaaatacttttctaatttggttatgaaaatgacatatgtcaacacaatatcaggtagtacaaaattaattgagagctctggaagagcgaccttattacaacctggagagacaatattggacatttgtaatgcattataccgtagtaagtcacaaagaaacttattaagtttcagagtaattcgccaaaatggctatcacgttgagacgactaatgaaggaaaggatgaatgcctttacattactacaattaatgtacagaagaaaattgtgcatgaaaaattacgtgcattttcttctaggttctactatacaagtgtaagtacagttgaatcacatgtcgtagtaaacaaaaggtttactaattttaatgattctattatttggtatgaccggttgggccatcccggatttaatatgatgcacagaatcattgagaattcacgtgggcacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="86351" stop="87500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86655" g_stop="87200" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="572" r_length="551" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E206250" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86655" e_stop="87200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAATGCTACAACGCATACAATATTAAAAGAAAAG---A-A-ATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTCGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGACACACCTT</genome_strand>
        <mrna_strand>AAATCTCCAATTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATACCTTTTTCATAGTGCTACTACACATACAATATTAAAAGAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGACATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAGCTCTGGAAGAGCGACCTTATTACAACCTGGAGAGACAATATTGGACATTTGTAATGCATTATACCGTAGTAAGTCACAAAGAAACTTATTAAGTTTCAGAGTAATTCGCCAAAATGGCTATCACGTTGAGACGACTAATGAAGGAAAGGATGAATGCCTTTACATTACTACAATTAATGTACAGAAGAAAATTGTGCATGAAAAATTACGTGCATTTTCTTCTAGGTTCTACTATACAAGTGTAAGTACAGTTGAATCACATGTCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTCTATTATTTGGTATGACCGGTTGGGCCATCCCGGATTTAATATGATGCACAGAATCATTGAGAATTCACGTGGGCACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="86452" stop="87433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86765" g_stop="87133" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86765" e_stop="87133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTCGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="88211" stop="89521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88511" g_stop="89221" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88511" e_stop="89221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCAATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGATTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTTAGATATCTCATAAATCTGGCAGTTTATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTTAAAGTGCCTGAAACATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGACTGAAACAATCAGGAAGGATGTGGTACAATCGTTTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACTCGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTG</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="88787" stop="90024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89087" g_stop="89724" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89087" e_stop="89724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGTTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGACTATTTGTTTACATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="88827" stop="90054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89127" g_stop="89754" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89127" e_stop="89754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGTTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGACTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="88827" stop="90002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89127" g_stop="89702" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89127" e_stop="89702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGTTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="88885" stop="90029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89177" g_stop="89729" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89177" e_stop="89729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGTTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGAT-CCGCATAAAGCTCGATCACAAACAGACTATTTGTTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211563" ref_strand="+" ref_description="SGN-E211563 [cLEC-67-I7]">
      <seq>ataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccataatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatgggtgagatagaagtncaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcancgtttgagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="89042" stop="90384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89342" g_stop="90084" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E211563" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89342" e_stop="90084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGTTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGACTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCAT---G-AAG-C-A-A----GTC-------G---AATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAAT-GGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTG</genome_strand>
        <mrna_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCATAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGGTGAGATAGAAGTNCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCANCGTTTGAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351886" ref_strand="+" ref_description="SGN-E351886 [cTOS-8-D9]">
      <seq>ggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcaacgtttgagaagttgagatacaagattggaatgcgccgtctccaagatatcaagtaaagttttcatcagggggagtgaaatacgcgttgtactcttttccttaactatgggtttgtcccaagttgggttttcctggtaagggttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="+" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="89538" stop="90518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89838" g_stop="90218" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="+" ref_id="SGN-E351886" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89838" e_stop="90218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGTTTTTAAT</genome_strand>
        <mrna_strand>GGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCAAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATACGCGTTGTACTCTTTTCCTTAACTATGGGTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGGTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374818" ref_strand="+" ref_description="SGN-E374818 [TUS-14-P4](-)">
      <seq>gatcaaccaactccaacaaaagggtatgcatctaatgaaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgatcctcctcctcaagatgatgatagttctgatacttctctcaaattggggctaccttactcaggctgaagagatcaaaagcaaggtgtggctatttttgtatgttattagaagaaggagaaaaaaaaaagtaactactaattattataattaattaatgtctgattaatgtaaaagctaaccccaaaaatttcatattatgtatgtaattggtgtattaatctcatgtattcgtctcccatagtttatataaatattattgttagtatctattaacttaattaactagcactaataatcttttataattgaactttgtgacttgtaactatataaaggcttaattatttaattatttgacttttttctgttgctgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="93302" stop="90971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93002" g_stop="92981" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92980" i_stop="92875" i_length="106">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92874" g_stop="92833" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="64" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92832" i_stop="92557" i_length="276">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92556" g_stop="92357" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="264" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92356" i_stop="91601" i_length="756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91600" g_stop="91263" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="602" r_length="338" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E374818" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93002" e_stop="92981"/>
          <exon e_start="92874" e_stop="92833"/>
          <exon e_start="92556" e_stop="92357"/>
          <exon e_start="91600" e_stop="91263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTATGTATGTAATTGGTGTATTAATCTCATGTATTCGTCTCCCATAGTTTATATAAATATTATTGTTAGTATCTATTAACTTAATTAACTAGCACTAATAATCTTTTATAATTGAACTTTGTGACTTGTAACTATATAAAGGCTTAATTATTTAATTATTTGACTTTTTTCTGTTGCTGTAAATTTAAATA</genome_strand>
        <mrna_strand>GATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGAAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTATGTATGTAATTGGTGTATTAATCTCATGTATTCGTCTCCCATAGTTTATATAAATATTATTGTTAGTATCTATTAACTTAATTAACTAGCACTAATAATCTTTTATAATTGAACTTTGTGACTTGTAACTATATAAAGGCTTAATTATTTAATTATTTGACTTTTTTCTGTTGCTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435568" ref_strand="-" ref_description="SGN-E435568 [STM-61-D8]">
      <seq>ttggatcaaccatcacttgaacttcagcttgtagagaatagcaattactccagactaagcaaggaaatttccgaaagaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggcatgcaactaatggaagaaaacgaaaaattaaggcaacagctgatggagatatctaataataataataataataatggatacaaagagccagtagtagtagcatttgaatcagaaaatggatttaatagtaataatgaagaaggccaatcatctgaatcagtcacaaatccatgtaactcaactggccctcctcctcaagatgatgatagttctgatatttctctcaaattggggctaccttactcaggctgaaaggaatcaaaagcaaggtgtggctatttttgtatgttatcggatggaggaaaaaaaaaagtaactactaattattataattaattaatgtaagattaatgtaaaagctaaccccaaaaaatttcatattatgtatgtaattggtgtattaagcccatgtatttgtctcctatattttatataaatatcatcgtaagtatctagtagcttaattaattaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="93931" stop="91056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93631" g_stop="93605" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93604" i_stop="93527" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93526" g_stop="93462" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="92" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93461" i_stop="93260" i_length="202">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93259" g_stop="93160" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="192" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93159" i_stop="93023" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93022" g_stop="92981" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="234" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92980" i_stop="92875" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92874" g_stop="92833" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="276" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92832" i_stop="92557" i_length="276">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.986" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92556" g_stop="92357" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="470" r_length="194" r_score="0.895"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92356" i_stop="91601" i_length="756">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91600" g_stop="91363" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="708" r_length="238" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="709" polyA_stop="720"/>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E435568" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435568" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93631" e_stop="93605"/>
          <exon e_start="93526" e_stop="93462"/>
          <exon e_start="93259" e_stop="93160"/>
          <exon e_start="93022" e_stop="92981"/>
          <exon e_start="92874" e_stop="92833"/>
          <exon e_start="92556" e_stop="92357"/>
          <exon e_start="91600" e_stop="91363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTG-AAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCC-AAAAATTTCATATTATGTATGTAATTGGTGTATTAATCTCATGTATTCGTCTCCCATAGTTTATATAAATATTATTGTTAGTATCTATTAACTTAATTAACTA</genome_strand>
        <mrna_strand>TTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAGAATAGCAATTACTCCAGACTAAGCAAGGAAATTTCCGAAAGAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGCATGCAACTAATGGAAGAAAACGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................CTGATGGAGATATC---TAATAATAATAATAATAATAATGGATACAAAGAGCCAGTAGTAGTAGCATTTGAATCAGAAAATGGA-TT--TAATAGTAATAATGAAGAAGGCCAATCATCTGAATCAGTCACAAATCCATGTAACTCAACTGGCCCTCCTCCTCAAGATGATGATAGTTCTGATATTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAAGGAATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATCGGATGGA-G-GAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTAAGATTAATGTAAAAGCTAACCCCAAAAAATTTCATATTATGTATGTAATTGGTGTATTAAGCCCATGTATTTGTCTCCTATATTTTATATAAATATCATCGTAAGTATCTAGTAGCTTAATTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244529" ref_strand="+" ref_description="SGN-E244529 [cLED-38-O3]">
      <seq>aaaaattggatcaaccatcacttgaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggtatgcatctaatggaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgatcctcctcctcaagatgatgatagttctgatacttctctcaaattggggctaccttactcaggctgaagagatcaaaagcaaggtgtggctatttttgtatgttattagaagaaggagaaaaaaaaaagtaactactaattattataattaattaatgtctgattaatgtaaaagctaaccccaaaaatttcatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="93936" stop="91150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93636" g_stop="93605" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93604" i_stop="93527" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93526" g_stop="93462" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="97" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93461" i_stop="93260" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93259" g_stop="93160" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="197" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93159" i_stop="93023" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93022" g_stop="92981" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="239" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92980" i_stop="92875" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92874" g_stop="92833" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="281" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92832" i_stop="92557" i_length="276">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92556" g_stop="92357" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="481" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92356" i_stop="91601" i_length="756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91600" g_stop="91450" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="632" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E244529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93636" e_stop="93605"/>
          <exon e_start="93526" e_stop="93462"/>
          <exon e_start="93259" e_stop="93160"/>
          <exon e_start="93022" e_stop="92981"/>
          <exon e_start="92874" e_stop="92833"/>
          <exon e_start="92556" e_stop="92357"/>
          <exon e_start="91600" e_stop="91450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTAT</genome_strand>
        <mrna_strand>AAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238569" ref_strand="+" ref_description="SGN-E238569 [cLED-17-L17]">
      <seq>aaaaattggatcaaccatcactttaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggtatgcatctaatggaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgatcctcctcctcaagatgatgatagttctgatacttctctcaaattggggctaccttactcaggctgaagagatcaaaagcaaggtgtggctatttttgtatgttattagaagaaggagaaaaaaaaaagtaactactaattattataattaattaatgtctgattaatgtaaaagctaaccccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="93936" stop="91162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93636" g_stop="93605" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93604" i_stop="93527" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93526" g_stop="93462" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="97" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93461" i_stop="93260" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93259" g_stop="93160" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="197" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93159" i_stop="93023" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93022" g_stop="92981" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="239" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92980" i_stop="92875" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92874" g_stop="92833" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="281" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92832" i_stop="92557" i_length="276">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92556" g_stop="92357" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="481" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92356" i_stop="91601" i_length="756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91600" g_stop="91462" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="620" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E238569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93636" e_stop="93605"/>
          <exon e_start="93526" e_stop="93462"/>
          <exon e_start="93259" e_stop="93160"/>
          <exon e_start="93022" e_stop="92981"/>
          <exon e_start="92874" e_stop="92833"/>
          <exon e_start="92556" e_stop="92357"/>
          <exon e_start="91600" e_stop="91462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAA</genome_strand>
        <mrna_strand>AAAAATTGGATCAACCATCACTTTAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233648" ref_strand="+" ref_description="SGN-E233648 [cLED-14-C20]">
      <seq>aaaaattggatcaaccatcacttgaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggtatgcatctaatggaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgatcctcctcctcaagatgatgatagttctgatacttctctcaaattggggctaccttactcaggctgaagagatcaaaagcaaggtgtggctatttttggatgttattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="93936" stop="91239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93636" g_stop="93605" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93604" i_stop="93527" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93526" g_stop="93462" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="97" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93461" i_stop="93260" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93259" g_stop="93160" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="197" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93159" i_stop="93023" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93022" g_stop="92981" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="239" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92980" i_stop="92875" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92874" g_stop="92833" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="281" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92832" i_stop="92557" i_length="276">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92556" g_stop="92357" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="481" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92356" i_stop="91601" i_length="756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91600" g_stop="91539" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="543" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E233648" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93636" e_stop="93605"/>
          <exon e_start="93526" e_stop="93462"/>
          <exon e_start="93259" e_stop="93160"/>
          <exon e_start="93022" e_stop="92981"/>
          <exon e_start="92874" e_stop="92833"/>
          <exon e_start="92556" e_stop="92357"/>
          <exon e_start="91600" e_stop="91539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGA</genome_strand>
        <mrna_strand>AAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGGATGTTATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609676" ref_strand="+" ref_description="SGN-E609676 [25689]">
      <seq>gaaaaaaaaacccctaatggctagagaaaaaattcagatcaagaaaatagataactccacagcaagacaagttacattttcaaagagaagaagaggtttattcaagaaagctgaagaactttctgttctttgtgatgctgatgttgctcttatcattttctcttctactggcaaattatttgactattctagctcaagcatgaaacaaattcttgagaggcgtgatttgcattccaaaaatttggaaaaattggatcaaccatcacttgaacttcagcttgtagagaatagcaattactccagactaagcaaggaaatttccgaaagaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggcatgcaactaatggaagaaaacgaaaaattaaggcaacagctgatggagatatctaataataataataataataatggatacaaagagtcagtagtagtagcatttgaatcagaaaatggatttaatagtaataatgaagaaggccaatcatctgaatcagtcacaaattccatgtaactcaactgggcctcctcctccaggatgatgatagttctgatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="96741" stop="92069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96442" g_stop="96245" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96244" i_stop="93684" i_length="2561">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.515" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93683" g_stop="93605" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="277" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93604" i_stop="93527" i_length="78">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93526" g_stop="93462" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="342" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93461" i_stop="93260" i_length="202">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93259" g_stop="93160" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="442" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93159" i_stop="93023" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93022" g_stop="92981" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="484" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92980" i_stop="92875" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92874" g_stop="92833" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="526" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92832" i_stop="92557" i_length="276">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.986" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92556" g_stop="92373" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="706" r_length="180" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E609676" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96442" e_stop="96245"/>
          <exon e_start="93683" e_stop="93605"/>
          <exon e_start="93526" e_stop="93462"/>
          <exon e_start="93259" e_stop="93160"/>
          <exon e_start="93022" e_stop="92981"/>
          <exon e_start="92874" e_stop="92833"/>
          <exon e_start="92556" e_stop="92373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAACTCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAGGTACATATCCATCATTTTTTCTTTCATTTACCTAATTATAACGACAGCAACATACTCAGTGAAATTCCGGGACCCGAAAAGAATAGTAGGTGTATGTAAAATCACCTAATTATCCTTATTTTTTGTTTGTGGTAGCTAGATTAGTTGTTTTCTAGACTAAAAAAAAGAAATTGGGAATAATTTTTGATTAGTTATTAAATAATAACGTATTTAGTAAAATTTTAGAAATGAATTTTGAGTAAAGTGATGTGTATGTGTATTTTATCTATAGGGTAGAGAGGTTTTTTCCGATGAATTTTAGGGCTAATTTAACAAGTGAAAATTAAAGTAATGATTTTTGTTAATTTTTTGTGAGGAATGAAGTTTTTTTTTTTTTTTTGGGTATTTTCTAAATGGGTGACTTTAGTTAGTCATGATTGAGGAGAATGATTAGAATTATTGAGTTTTGGATTTTTGTAAATATAGTTTATTAATTAATTATTATATTAAATGGATTTTTAGGTATAAATTTAGGGTTTGATTTTAAGTTATTGAGTTTTGTTGAATTCTTAGGAAAAGTTCTTCGCTGTTGTTTACAAATGGGTGTCTTTAAGCTAGTCATGATTGACAAGAATTATATCGAGTTATTTAAATTCTGAAAGAAGATTTTGATAAATTGTTTATATATGTAAAAAGTGAGATTTTATAATATAAATTTAAAAATTTGATCAAAAGCTATTAGATTTCATCGTGCCCGCATACAAATCTCTTCTCTATTATTTAACAAGTTATGTGCACTGATAATATTACTAATATACTTTAATTTGTTATAATACCAATTAAGTTACATAGTTTAATTTGTGTAGAAGTTAAGTTACTACTTTTGTCAAGTAATTTACTTATTAATTACTACATGGTTTTCACATAACATAAACACTTGCTATATTTAGCAACTATTGAGAAACCCACCTCAAGAAACTTTCTATTTTGTGTCATTTATTGACTCTTTTTTTTAGGTAAATAATTAATGAAAAAAACTTGAATTTTGTATTAGAAAACAAAGCTTCTAAAGACTCAATTTTTATTTAAAAAGGAATCAGAAAAAATGGAGAATAAACAATAATACCAACACAAAATGAGTGGTGTAGGAAGTAGTTAGTAGTTACCAGGTTATAAGAATTTTATGTTGTTTAAATTCTTCAAAAATATTATTACATTATATTAGATCATTTTATAACATGTAGTAATTTTTGATGATTTGATGTGTCAATGTAAATTTTATTCTTTTGGATTGAAAATATATATTTTCGCACACAATGACATTATTAAAGGATTCACAGAATATATATGTCAATTTCATTTATGAAATTCAAAAATTTTGTTACATTATTAATTAAATTGACTTGTAATAACAAATAATATTTTAAAGCTTAGATAGAACAATAAAAAAATAAAAGGGAATAAATTTAGCTGGATAATGTTATCGAAAGGGCCACCATATCTTATCTGTTTCACAGAAAGGCAATAATATTATATCTTATAATATAAAAATAAATATTATCATGGGAACTATATATTTATGGTGAATAGGACAAACTCCTTTTAATGGGGAAAAAAAGAAGCATATTTTAGGAATTTTATGTTTTTTTTTTGTATGGTATAAGTAAAAAGTAACAAATTTGATGAGCTATTTTTTTGAGGTGGTTGTGTGTGGTATATAAAATAATTGTTTTCCCCCTCTACAAGTAAATGTTTTAAGAAAGCTATAATGAACTCTCTTCATTCGGTATTGTTTGTCATAATTTTTATTTTTAGAGTTAAATTATGAAAATTTTGACTTACATTTTAAGATGTATTTTTTAATCATATTAATATGTAAAAAATTGTAATTTATAGTATTTTCCATATAATTTTAGGATATCTAATTTTTTTGTTTAAAATATCGAATTAATCTGATCTAATTTACCTTTGAAAATTAATCAAGTGACTTTAGATAAGTGCATCATGATAAACAATTCCGGACGAAGGGTGTATAATTAATCTACATTTTAATAATTTGATTTTTTTTTTATAATTCACTTATTTATCATCCTCGATATTTAAGCTTATTGAGTGTGTCATATATCAAAGATTAATAGATCGTCTTTTTATAGTCTTGAATAATCTTATACTTCATAGGTTTATTACTTTTGAAGTTGAGTCAGACTTATCCTTAGCTATTAGTATTATGTCGTTAAGTTGATAGGCCTGCTCGAATGGGGAAGAGGTGTTATCTATCCCACATTAGTTGACGGATGAGTTGTTTATGTCGGTGTTAAGCAATATTTTTCATTTGAGATTGAGTTAGATCTAAAGTCAATTTTCTCGACAGAAATTACAAATTTGTCTTTTACTTTCTTTGATGTTGTGTTCATGTGTCCCTAATATATTGGATACATGACACATACATACATTCTTCAAAGGAATTTAATATTTATGTATGTATCGACATCATAATTGATCACATAAAAGATAACTATATATAATTCTACCGTTCATCAATGATTTACGTACGATCTTAATATTTTTAATTTCTCATGAAGCATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAA-TCCATGTAACTCAATTGATCCTCCTCCT-CAAGATGATGATAGTTCTGATA</genome_strand>
        <mrna_strand>GAAAAAAAAACCCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGAAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTTTGTGATGCTGATGTTGCTCTTATCATTTTCTCTTCTACTGGCAAATTATTTGACTATTCTAGCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATTTGGAAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAGAATAGCAATTACTCCAGACTAAGCAAGGAAATTTCCGAAAGAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGCATGCAACTAATGGAAGAAAACGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................CTGATGGAGATATC---TAATAATAATAATAATAATAATGGATACAAAGAGTCAGTAGTAGTAGCATTTGAATCAGAAAATGGA-TT--TAATAGTAATAATGAAGAAGGCCAATCATCTGAATCAGTCACAAATTCCATGTAACTCAACTGGGCCTCCTCCTCCAGGATGATGATAGTTCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435567" ref_strand="+" ref_description="SGN-E435567 [STM-61-D8]">
      <seq>cttaactctcttagttctatttttggaaaattaaaaagagaaaaaaaaaacccctaatggctagagaaaaaattcagatcaagaaaatagataactccacagcaagacaagttacattttcaaagagaagaagaggtttattcaagaaagctgaagaactttctgttctttgtgatgctgatgttgctcttatcattttctcttctactggcaaattatttgactattctagctcaagcatgaaacaaattcttgagaggcgtgatttgcattccaaaaatttggaaaaattggatcaaccatcacttgaacttcagcttgtagagaatagcaattactccagactaagcaaggaaatttccgaaagaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggcatgcaactaatggaagaaaacgaaaaattaaggcaacagctgatggagatatctaataataataataataataatggatacnaagagccagtagtagtagcatttgaatcagaaaatggatttaatagtaataatgaagaagggccatcatctgaatcagtcacaaatccatgtaactcaactggccctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="96777" stop="92099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96477" g_stop="96245" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96244" i_stop="93684" i_length="2561">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.515" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93683" g_stop="93605" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="317" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93604" i_stop="93527" i_length="78">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93526" g_stop="93462" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="382" r_length="65" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93461" i_stop="93260" i_length="202">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93259" g_stop="93160" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="482" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93159" i_stop="93023" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93022" g_stop="92981" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="524" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92980" i_stop="92875" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92874" g_stop="92833" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="566" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92832" i_stop="92557" i_length="276">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.986" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92556" g_stop="92399" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="718" r_length="152" r_score="0.861"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E435567" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96477" e_stop="96245"/>
          <exon e_start="93683" e_stop="93605"/>
          <exon e_start="93526" e_stop="93462"/>
          <exon e_start="93259" e_stop="93160"/>
          <exon e_start="93022" e_stop="92981"/>
          <exon e_start="92874" e_stop="92833"/>
          <exon e_start="92556" e_stop="92399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAACTCTCTTAGTTCTATTTTTGGAAAATT--AAA-A-AA-AAAAAAACTCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAGGTACATATCCATCATTTTTTCTTTCATTTACCTAATTATAACGACAGCAACATACTCAGTGAAATTCCGGGACCCGAAAAGAATAGTAGGTGTATGTAAAATCACCTAATTATCCTTATTTTTTGTTTGTGGTAGCTAGATTAGTTGTTTTCTAGACTAAAAAAAAGAAATTGGGAATAATTTTTGATTAGTTATTAAATAATAACGTATTTAGTAAAATTTTAGAAATGAATTTTGAGTAAAGTGATGTGTATGTGTATTTTATCTATAGGGTAGAGAGGTTTTTTCCGATGAATTTTAGGGCTAATTTAACAAGTGAAAATTAAAGTAATGATTTTTGTTAATTTTTTGTGAGGAATGAAGTTTTTTTTTTTTTTTTGGGTATTTTCTAAATGGGTGACTTTAGTTAGTCATGATTGAGGAGAATGATTAGAATTATTGAGTTTTGGATTTTTGTAAATATAGTTTATTAATTAATTATTATATTAAATGGATTTTTAGGTATAAATTTAGGGTTTGATTTTAAGTTATTGAGTTTTGTTGAATTCTTAGGAAAAGTTCTTCGCTGTTGTTTACAAATGGGTGTCTTTAAGCTAGTCATGATTGACAAGAATTATATCGAGTTATTTAAATTCTGAAAGAAGATTTTGATAAATTGTTTATATATGTAAAAAGTGAGATTTTATAATATAAATTTAAAAATTTGATCAAAAGCTATTAGATTTCATCGTGCCCGCATACAAATCTCTTCTCTATTATTTAACAAGTTATGTGCACTGATAATATTACTAATATACTTTAATTTGTTATAATACCAATTAAGTTACATAGTTTAATTTGTGTAGAAGTTAAGTTACTACTTTTGTCAAGTAATTTACTTATTAATTACTACATGGTTTTCACATAACATAAACACTTGCTATATTTAGCAACTATTGAGAAACCCACCTCAAGAAACTTTCTATTTTGTGTCATTTATTGACTCTTTTTTTTAGGTAAATAATTAATGAAAAAAACTTGAATTTTGTATTAGAAAACAAAGCTTCTAAAGACTCAATTTTTATTTAAAAAGGAATCAGAAAAAATGGAGAATAAACAATAATACCAACACAAAATGAGTGGTGTAGGAAGTAGTTAGTAGTTACCAGGTTATAAGAATTTTATGTTGTTTAAATTCTTCAAAAATATTATTACATTATATTAGATCATTTTATAACATGTAGTAATTTTTGATGATTTGATGTGTCAATGTAAATTTTATTCTTTTGGATTGAAAATATATATTTTCGCACACAATGACATTATTAAAGGATTCACAGAATATATATGTCAATTTCATTTATGAAATTCAAAAATTTTGTTACATTATTAATTAAATTGACTTGTAATAACAAATAATATTTTAAAGCTTAGATAGAACAATAAAAAAATAAAAGGGAATAAATTTAGCTGGATAATGTTATCGAAAGGGCCACCATATCTTATCTGTTTCACAGAAAGGCAATAATATTATATCTTATAATATAAAAATAAATATTATCATGGGAACTATATATTTATGGTGAATAGGACAAACTCCTTTTAATGGGGAAAAAAAGAAGCATATTTTAGGAATTTTATGTTTTTTTTTTGTATGGTATAAGTAAAAAGTAACAAATTTGATGAGCTATTTTTTTGAGGTGGTTGTGTGTGGTATATAAAATAATTGTTTTCCCCCTCTACAAGTAAATGTTTTAAGAAAGCTATAATGAACTCTCTTCATTCGGTATTGTTTGTCATAATTTTTATTTTTAGAGTTAAATTATGAAAATTTTGACTTACATTTTAAGATGTATTTTTTAATCATATTAATATGTAAAAAATTGTAATTTATAGTATTTTCCATATAATTTTAGGATATCTAATTTTTTTGTTTAAAATATCGAATTAATCTGATCTAATTTACCTTTGAAAATTAATCAAGTGACTTTAGATAAGTGCATCATGATAAACAATTCCGGACGAAGGGTGTATAATTAATCTACATTTTAATAATTTGATTTTTTTTTTATAATTCACTTATTTATCATCCTCGATATTTAAGCTTATTGAGTGTGTCATATATCAAAGATTAATAGATCGTCTTTTTATAGTCTTGAATAATCTTATACTTCATAGGTTTATTACTTTTGAAGTTGAGTCAGACTTATCCTTAGCTATTAGTATTATGTCGTTAAGTTGATAGGCCTGCTCGAATGGGGAAGAGGTGTTATCTATCCCACATTAGTTGACGGATGAGTTGTTTATGTCGGTGTTAAGCAATATTTTTCATTTGAGATTGAGTTAGATCTAAAGTCAATTTTCTCGACAGAAATTACAAATTTGTCTTTTACTTTCTTTGATGTTGTGTTCATGTGTCCCTAATATATTGGATACATGACACATACATACATTCTTCAAAGGAATTTAATATTTATGTATGTATCGACATCATAATTGATCACATAAAAGATAACTATATATAATTCTACCGTTCATCAATGATTTACGTACGATCTTAATATTTTTAATTTCTCATGAAGCATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCC</genome_strand>
        <mrna_strand>CTTAACTCTCTTAGTTCTATTTTTGGAAAATTAAAAAGAGAAAAAAAAAACCCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGAAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTTTGTGATGCTGATGTTGCTCTTATCATTTTCTCTTCTACTGGCAAATTATTTGACTATTCTAGCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATTTGGAAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAGAATAGCAATTACTCCAGACTAAGCAAGGAAATTTCCGAAAGAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGCATGCAACTAATGGAAGAAAACGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................CTGATGGAGATATC---TAATAATAATAATAATAATAATGGATACNAAGAGCCAGTAGTAGTAGCATTTGAATCAGAAAATGGATTTAATAGTAATAATGAAGAAG--GGCC-ATCATCTGAATCAGTCACAAATCCATGTAACTCAACTGGCCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374819" ref_strand="+" ref_description="SGN-E374819 [TUS-14-P4]">
      <seq>aaaaaaaaaactcctaatggctagagaaaaaattcagatcaagaaaatagataactccacagcaagacaagttacattttcaaagaggagaagaggtttattcaagaaagctgaagaactttctgttctctgtgatgctgatgttgctctcatcattttctcttctactggaaaattatttgactattctagctcaagcatgaaacaaattcttgagaggcgtgatttgcattccaaaaatctggaaaaattggatcaaccatcacttgaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggtatgcatctaatggaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="96742" stop="92104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96442" g_stop="96245" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96244" i_stop="93684" i_length="2561">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93683" g_stop="93605" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="277" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93604" i_stop="93527" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93526" g_stop="93462" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="342" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93461" i_stop="93260" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93259" g_stop="93160" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="442" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93159" i_stop="93023" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93022" g_stop="92981" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="484" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92980" i_stop="92875" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92874" g_stop="92833" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="526" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92832" i_stop="92557" i_length="276">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92556" g_stop="92404" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="679" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E374819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96442" e_stop="96245"/>
          <exon e_start="93683" e_stop="93605"/>
          <exon e_start="93526" e_stop="93462"/>
          <exon e_start="93259" e_stop="93160"/>
          <exon e_start="93022" e_stop="92981"/>
          <exon e_start="92874" e_stop="92833"/>
          <exon e_start="92556" e_stop="92404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAACTCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAGGTACATATCCATCATTTTTTCTTTCATTTACCTAATTATAACGACAGCAACATACTCAGTGAAATTCCGGGACCCGAAAAGAATAGTAGGTGTATGTAAAATCACCTAATTATCCTTATTTTTTGTTTGTGGTAGCTAGATTAGTTGTTTTCTAGACTAAAAAAAAGAAATTGGGAATAATTTTTGATTAGTTATTAAATAATAACGTATTTAGTAAAATTTTAGAAATGAATTTTGAGTAAAGTGATGTGTATGTGTATTTTATCTATAGGGTAGAGAGGTTTTTTCCGATGAATTTTAGGGCTAATTTAACAAGTGAAAATTAAAGTAATGATTTTTGTTAATTTTTTGTGAGGAATGAAGTTTTTTTTTTTTTTTTGGGTATTTTCTAAATGGGTGACTTTAGTTAGTCATGATTGAGGAGAATGATTAGAATTATTGAGTTTTGGATTTTTGTAAATATAGTTTATTAATTAATTATTATATTAAATGGATTTTTAGGTATAAATTTAGGGTTTGATTTTAAGTTATTGAGTTTTGTTGAATTCTTAGGAAAAGTTCTTCGCTGTTGTTTACAAATGGGTGTCTTTAAGCTAGTCATGATTGACAAGAATTATATCGAGTTATTTAAATTCTGAAAGAAGATTTTGATAAATTGTTTATATATGTAAAAAGTGAGATTTTATAATATAAATTTAAAAATTTGATCAAAAGCTATTAGATTTCATCGTGCCCGCATACAAATCTCTTCTCTATTATTTAACAAGTTATGTGCACTGATAATATTACTAATATACTTTAATTTGTTATAATACCAATTAAGTTACATAGTTTAATTTGTGTAGAAGTTAAGTTACTACTTTTGTCAAGTAATTTACTTATTAATTACTACATGGTTTTCACATAACATAAACACTTGCTATATTTAGCAACTATTGAGAAACCCACCTCAAGAAACTTTCTATTTTGTGTCATTTATTGACTCTTTTTTTTAGGTAAATAATTAATGAAAAAAACTTGAATTTTGTATTAGAAAACAAAGCTTCTAAAGACTCAATTTTTATTTAAAAAGGAATCAGAAAAAATGGAGAATAAACAATAATACCAACACAAAATGAGTGGTGTAGGAAGTAGTTAGTAGTTACCAGGTTATAAGAATTTTATGTTGTTTAAATTCTTCAAAAATATTATTACATTATATTAGATCATTTTATAACATGTAGTAATTTTTGATGATTTGATGTGTCAATGTAAATTTTATTCTTTTGGATTGAAAATATATATTTTCGCACACAATGACATTATTAAAGGATTCACAGAATATATATGTCAATTTCATTTATGAAATTCAAAAATTTTGTTACATTATTAATTAAATTGACTTGTAATAACAAATAATATTTTAAAGCTTAGATAGAACAATAAAAAAATAAAAGGGAATAAATTTAGCTGGATAATGTTATCGAAAGGGCCACCATATCTTATCTGTTTCACAGAAAGGCAATAATATTATATCTTATAATATAAAAATAAATATTATCATGGGAACTATATATTTATGGTGAATAGGACAAACTCCTTTTAATGGGGAAAAAAAGAAGCATATTTTAGGAATTTTATGTTTTTTTTTTGTATGGTATAAGTAAAAAGTAACAAATTTGATGAGCTATTTTTTTGAGGTGGTTGTGTGTGGTATATAAAATAATTGTTTTCCCCCTCTACAAGTAAATGTTTTAAGAAAGCTATAATGAACTCTCTTCATTCGGTATTGTTTGTCATAATTTTTATTTTTAGAGTTAAATTATGAAAATTTTGACTTACATTTTAAGATGTATTTTTTAATCATATTAATATGTAAAAAATTGTAATTTATAGTATTTTCCATATAATTTTAGGATATCTAATTTTTTTGTTTAAAATATCGAATTAATCTGATCTAATTTACCTTTGAAAATTAATCAAGTGACTTTAGATAAGTGCATCATGATAAACAATTCCGGACGAAGGGTGTATAATTAATCTACATTTTAATAATTTGATTTTTTTTTTATAATTCACTTATTTATCATCCTCGATATTTAAGCTTATTGAGTGTGTCATATATCAAAGATTAATAGATCGTCTTTTTATAGTCTTGAATAATCTTATACTTCATAGGTTTATTACTTTTGAAGTTGAGTCAGACTTATCCTTAGCTATTAGTATTATGTCGTTAAGTTGATAGGCCTGCTCGAATGGGGAAGAGGTGTTATCTATCCCACATTAGTTGACGGATGAGTTGTTTATGTCGGTGTTAAGCAATATTTTTCATTTGAGATTGAGTTAGATCTAAAGTCAATTTTCTCGACAGAAATTACAAATTTGTCTTTTACTTTCTTTGATGTTGTGTTCATGTGTCCCTAATATATTGGATACATGACACATACATACATTCTTCAAAGGAATTTAATATTTATGTATGTATCGACATCATAATTGATCACATAAAAGATAACTATATATAATTCTACCGTTCATCAATGATTTACGTACGATCTTAATATTTTTAATTTCTCATGAAGCATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGAT</genome_strand>
        <mrna_strand>AAAAAAAAAACTCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610573" ref_strand="+" ref_description="SGN-E610573 [57737]">
      <seq>attctttgttccctcttttataaattccctcttccttcttaactctcttagttctatttttggaaaattaaaaagagagaaaaaaaacccctaatggctagagaaaaaattcagatcaagaaaatagataactccacagcaagacaagttacattttcaaagagaagaagaggtttattcaagaaagctgaagaactttctgttctttgtgatgctgatgttgctctcatcattttctcttctactggcaaattatttgactattctaactcaagcatgaaacaaattcttgagaggcgtgatttgcattccaaaaatttggaaaaattggatcaaccatcacttgaacttcagcttgtagagaatagcaattactccagattaagcaaggaaatttccgaaagaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaacaatccaacaaaagggcatgcaactaatggaagaaaacgaaaaattaaggcaacagctgatggagatatctaataataaataataataatggataccaagagccagtagtaatagcatttgaatcagaaaatggatttaaatagttcactaatgaaaaagggccattcatctggaatcagtcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="96814" stop="92164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96514" g_stop="96245" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96244" i_stop="93684" i_length="2561">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.515" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93683" g_stop="93605" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="354" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93604" i_stop="93527" i_length="78">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93526" g_stop="93462" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="419" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93461" i_stop="93260" i_length="202">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93259" g_stop="93160" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="519" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93159" i_stop="93023" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93022" g_stop="92981" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="560" r_length="41" r_score="0.952"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92980" i_stop="92875" i_length="106">
            <donor d_prob="0.988" d_score="0.95"/>
            <acceptor a_prob="0.994" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92874" g_stop="92833" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="602" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92832" i_stop="92557" i_length="276">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.986" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="92556" g_stop="92423" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="733" r_length="131" r_score="0.776"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E610573" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96514" e_stop="96245"/>
          <exon e_start="93683" e_stop="93605"/>
          <exon e_start="93526" e_stop="93462"/>
          <exon e_start="93259" e_stop="93160"/>
          <exon e_start="93022" e_stop="92981"/>
          <exon e_start="92874" e_stop="92833"/>
          <exon e_start="92556" e_stop="92423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTGTTCCCTCTTTTATAAATTCCCTCTTTCTTCATAACTCTCTTAGTTCTATTTTTGGAAAATTAAAAA-----AAAAAAAACTCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAGGTACATATCCATCATTTTTTCTTTCATTTACCTAATTATAACGACAGCAACATACTCAGTGAAATTCCGGGACCCGAAAAGAATAGTAGGTGTATGTAAAATCACCTAATTATCCTTATTTTTTGTTTGTGGTAGCTAGATTAGTTGTTTTCTAGACTAAAAAAAAGAAATTGGGAATAATTTTTGATTAGTTATTAAATAATAACGTATTTAGTAAAATTTTAGAAATGAATTTTGAGTAAAGTGATGTGTATGTGTATTTTATCTATAGGGTAGAGAGGTTTTTTCCGATGAATTTTAGGGCTAATTTAACAAGTGAAAATTAAAGTAATGATTTTTGTTAATTTTTTGTGAGGAATGAAGTTTTTTTTTTTTTTTTGGGTATTTTCTAAATGGGTGACTTTAGTTAGTCATGATTGAGGAGAATGATTAGAATTATTGAGTTTTGGATTTTTGTAAATATAGTTTATTAATTAATTATTATATTAAATGGATTTTTAGGTATAAATTTAGGGTTTGATTTTAAGTTATTGAGTTTTGTTGAATTCTTAGGAAAAGTTCTTCGCTGTTGTTTACAAATGGGTGTCTTTAAGCTAGTCATGATTGACAAGAATTATATCGAGTTATTTAAATTCTGAAAGAAGATTTTGATAAATTGTTTATATATGTAAAAAGTGAGATTTTATAATATAAATTTAAAAATTTGATCAAAAGCTATTAGATTTCATCGTGCCCGCATACAAATCTCTTCTCTATTATTTAACAAGTTATGTGCACTGATAATATTACTAATATACTTTAATTTGTTATAATACCAATTAAGTTACATAGTTTAATTTGTGTAGAAGTTAAGTTACTACTTTTGTCAAGTAATTTACTTATTAATTACTACATGGTTTTCACATAACATAAACACTTGCTATATTTAGCAACTATTGAGAAACCCACCTCAAGAAACTTTCTATTTTGTGTCATTTATTGACTCTTTTTTTTAGGTAAATAATTAATGAAAAAAACTTGAATTTTGTATTAGAAAACAAAGCTTCTAAAGACTCAATTTTTATTTAAAAAGGAATCAGAAAAAATGGAGAATAAACAATAATACCAACACAAAATGAGTGGTGTAGGAAGTAGTTAGTAGTTACCAGGTTATAAGAATTTTATGTTGTTTAAATTCTTCAAAAATATTATTACATTATATTAGATCATTTTATAACATGTAGTAATTTTTGATGATTTGATGTGTCAATGTAAATTTTATTCTTTTGGATTGAAAATATATATTTTCGCACACAATGACATTATTAAAGGATTCACAGAATATATATGTCAATTTCATTTATGAAATTCAAAAATTTTGTTACATTATTAATTAAATTGACTTGTAATAACAAATAATATTTTAAAGCTTAGATAGAACAATAAAAAAATAAAAGGGAATAAATTTAGCTGGATAATGTTATCGAAAGGGCCACCATATCTTATCTGTTTCACAGAAAGGCAATAATATTATATCTTATAATATAAAAATAAATATTATCATGGGAACTATATATTTATGGTGAATAGGACAAACTCCTTTTAATGGGGAAAAAAAGAAGCATATTTTAGGAATTTTATGTTTTTTTTTTGTATGGTATAAGTAAAAAGTAACAAATTTGATGAGCTATTTTTTTGAGGTGGTTGTGTGTGGTATATAAAATAATTGTTTTCCCCCTCTACAAGTAAATGTTTTAAGAAAGCTATAATGAACTCTCTTCATTCGGTATTGTTTGTCATAATTTTTATTTTTAGAGTTAAATTATGAAAATTTTGACTTACATTTTAAGATGTATTTTTTAATCATATTAATATGTAAAAAATTGTAATTTATAGTATTTTCCATATAATTTTAGGATATCTAATTTTTTTGTTTAAAATATCGAATTAATCTGATCTAATTTACCTTTGAAAATTAATCAAGTGACTTTAGATAAGTGCATCATGATAAACAATTCCGGACGAAGGGTGTATAATTAATCTACATTTTAATAATTTGATTTTTTTTTTATAATTCACTTATTTATCATCCTCGATATTTAAGCTTATTGAGTGTGTCATATATCAAAGATTAATAGATCGTCTTTTTATAGTCTTGAATAATCTTATACTTCATAGGTTTATTACTTTTGAAGTTGAGTCAGACTTATCCTTAGCTATTAGTATTATGTCGTTAAGTTGATAGGCCTGCTCGAATGGGGAAGAGGTGTTATCTATCCCACATTAGTTGACGGATGAGTTGTTTATGTCGGTGTTAAGCAATATTTTTCATTTGAGATTGAGTTAGATCTAAAGTCAATTTTCTCGACAGAAATTACAAATTTGTCTTTTACTTTCTTTGATGTTGTGTTCATGTGTCCCTAATATATTGGATACATGACACATACATACATTCTTCAAAGGAATTTAATATTTATGTATGTATCGACATCATAATTGATCACATAAAAGATAACTATATATAATTCTACCGTTCATCAATGATTTACGTACGATCTTAATATTTTTAATTTCTCATGAAGCATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATG-AAGATGGCCAATCATCT-GAATCAGTAACAAA</genome_strand>
        <mrna_strand>ATTCTTTGTTCCCTCTTTTATAAATTCCCTCTTCCTTCTTAACTCTCTTAGTTCTATTTTTGGAAAATTAAAAAGAGAGAAAAAAAACCCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGAAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTTTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGCAAATTATTTGACTATTCTAACTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATTTGGAAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAGAATAGCAATTACTCCAGATTAAGCAAGGAAATTTCCGAAAGAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAAACAA-TCCAACAAAAG..........................................................................................................GGCATGCAACTAATGGAAGAAAACGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................CTGATGGAGATATC---TAATAAT-A-AATAATAATAATGGATACCAAGAGCCAGTAGTAATAGCATTTGAATCAGAAAATGGATTTAAATAGTTCACTAATGAAAAAGGGCCATTCATCTGGAATCAGTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202045" ref_strand="+" ref_description="SGN-E202045 [cLEC-7-P7]">
      <seq>aaaaaaaaaactcctaatggctagagaaaaaattcagatcaagaaaatagataactccacagcaagacaagttacattttcaaagaggagaagaggtttattcaagaaagctgaagaactttctgttctctgtgatgctgatgttgctctcatcattttctcttctactggaaaattatttgactattctagctcaagcatgaaacaaattcttgagaggcgtgatttgcattccaaaaatctggaaaaattggatcaaccatcacttgaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="96742" stop="92698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96442" g_stop="96245" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96244" i_stop="93684" i_length="2561">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93683" g_stop="93605" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="277" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93604" i_stop="93527" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93526" g_stop="93462" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="342" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93461" i_stop="93260" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93259" g_stop="93160" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="442" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93159" i_stop="93023" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93022" g_stop="92998" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="467" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E202045" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96442" e_stop="96245"/>
          <exon e_start="93683" e_stop="93605"/>
          <exon e_start="93526" e_stop="93462"/>
          <exon e_start="93259" e_stop="93160"/>
          <exon e_start="93022" e_stop="92998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAACTCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAGGTACATATCCATCATTTTTTCTTTCATTTACCTAATTATAACGACAGCAACATACTCAGTGAAATTCCGGGACCCGAAAAGAATAGTAGGTGTATGTAAAATCACCTAATTATCCTTATTTTTTGTTTGTGGTAGCTAGATTAGTTGTTTTCTAGACTAAAAAAAAGAAATTGGGAATAATTTTTGATTAGTTATTAAATAATAACGTATTTAGTAAAATTTTAGAAATGAATTTTGAGTAAAGTGATGTGTATGTGTATTTTATCTATAGGGTAGAGAGGTTTTTTCCGATGAATTTTAGGGCTAATTTAACAAGTGAAAATTAAAGTAATGATTTTTGTTAATTTTTTGTGAGGAATGAAGTTTTTTTTTTTTTTTTGGGTATTTTCTAAATGGGTGACTTTAGTTAGTCATGATTGAGGAGAATGATTAGAATTATTGAGTTTTGGATTTTTGTAAATATAGTTTATTAATTAATTATTATATTAAATGGATTTTTAGGTATAAATTTAGGGTTTGATTTTAAGTTATTGAGTTTTGTTGAATTCTTAGGAAAAGTTCTTCGCTGTTGTTTACAAATGGGTGTCTTTAAGCTAGTCATGATTGACAAGAATTATATCGAGTTATTTAAATTCTGAAAGAAGATTTTGATAAATTGTTTATATATGTAAAAAGTGAGATTTTATAATATAAATTTAAAAATTTGATCAAAAGCTATTAGATTTCATCGTGCCCGCATACAAATCTCTTCTCTATTATTTAACAAGTTATGTGCACTGATAATATTACTAATATACTTTAATTTGTTATAATACCAATTAAGTTACATAGTTTAATTTGTGTAGAAGTTAAGTTACTACTTTTGTCAAGTAATTTACTTATTAATTACTACATGGTTTTCACATAACATAAACACTTGCTATATTTAGCAACTATTGAGAAACCCACCTCAAGAAACTTTCTATTTTGTGTCATTTATTGACTCTTTTTTTTAGGTAAATAATTAATGAAAAAAACTTGAATTTTGTATTAGAAAACAAAGCTTCTAAAGACTCAATTTTTATTTAAAAAGGAATCAGAAAAAATGGAGAATAAACAATAATACCAACACAAAATGAGTGGTGTAGGAAGTAGTTAGTAGTTACCAGGTTATAAGAATTTTATGTTGTTTAAATTCTTCAAAAATATTATTACATTATATTAGATCATTTTATAACATGTAGTAATTTTTGATGATTTGATGTGTCAATGTAAATTTTATTCTTTTGGATTGAAAATATATATTTTCGCACACAATGACATTATTAAAGGATTCACAGAATATATATGTCAATTTCATTTATGAAATTCAAAAATTTTGTTACATTATTAATTAAATTGACTTGTAATAACAAATAATATTTTAAAGCTTAGATAGAACAATAAAAAAATAAAAGGGAATAAATTTAGCTGGATAATGTTATCGAAAGGGCCACCATATCTTATCTGTTTCACAGAAAGGCAATAATATTATATCTTATAATATAAAAATAAATATTATCATGGGAACTATATATTTATGGTGAATAGGACAAACTCCTTTTAATGGGGAAAAAAAGAAGCATATTTTAGGAATTTTATGTTTTTTTTTTGTATGGTATAAGTAAAAAGTAACAAATTTGATGAGCTATTTTTTTGAGGTGGTTGTGTGTGGTATATAAAATAATTGTTTTCCCCCTCTACAAGTAAATGTTTTAAGAAAGCTATAATGAACTCTCTTCATTCGGTATTGTTTGTCATAATTTTTATTTTTAGAGTTAAATTATGAAAATTTTGACTTACATTTTAAGATGTATTTTTTAATCATATTAATATGTAAAAAATTGTAATTTATAGTATTTTCCATATAATTTTAGGATATCTAATTTTTTTGTTTAAAATATCGAATTAATCTGATCTAATTTACCTTTGAAAATTAATCAAGTGACTTTAGATAAGTGCATCATGATAAACAATTCCGGACGAAGGGTGTATAATTAATCTACATTTTAATAATTTGATTTTTTTTTTATAATTCACTTATTTATCATCCTCGATATTTAAGCTTATTGAGTGTGTCATATATCAAAGATTAATAGATCGTCTTTTTATAGTCTTGAATAATCTTATACTTCATAGGTTTATTACTTTTGAAGTTGAGTCAGACTTATCCTTAGCTATTAGTATTATGTCGTTAAGTTGATAGGCCTGCTCGAATGGGGAAGAGGTGTTATCTATCCCACATTAGTTGACGGATGAGTTGTTTATGTCGGTGTTAAGCAATATTTTTCATTTGAGATTGAGTTAGATCTAAAGTCAATTTTCTCGACAGAAATTACAAATTTGTCTTTTACTTTCTTTGATGTTGTGTTCATGTGTCCCTAATATATTGGATACATGACACATACATACATTCTTCAAAGGAATTTAATATTTATGTATGTATCGACATCATAATTGATCACATAAAAGATAACTATATATAATTCTACCGTTCATCAATGATTTACGTACGATCTTAATATTTTTAATTTCTCATGAAGCATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCA</genome_strand>
        <mrna_strand>AAAAAAAAAACTCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608834" ref_strand="+" ref_description="SGN-E608834 [24829]">
      <seq>attctttgttccctcttttataaattccctcttccttcttaactctcttagttctatttttggaaaattaaaaagagagaaaaaaaacccctaatggctagagaaaaaattcagatcaagaaaatagataactccacagcaagacaagttacattttcaaagagaagaagaggtttattcaagaaagctgaagaactttctgttctttgtttatgctgatgttgctctcatcattttctcttctactggcaaattatttgactattctaactcaagcatgaaacaaattcttgagaggcgtgatttgcattccaaaaatttggaaaaattggatcaaccatcacttgaacttcagcttgtagagaatagcaattactccagattaagcaaggaaatttccgaaagaagtcatcgattaaggcaaatcgaggggagaagaacttcaaggactaaactattgaagcagttgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="96814" stop="92910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96514" g_stop="96245" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96244" i_stop="93684" i_length="2561">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.515" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93683" g_stop="93605" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="355" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93604" i_stop="93527" i_length="78">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93526" g_stop="93462" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="420" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93461" i_stop="93260" i_length="202">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.541" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93259" g_stop="93210" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="473" r_length="53" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E608834" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96514" e_stop="96245"/>
          <exon e_start="93683" e_stop="93605"/>
          <exon e_start="93526" e_stop="93462"/>
          <exon e_start="93259" e_stop="93210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTTGTTCCCTCTTTTATAAATTCCCTCTTTCTTCATAACTCTCTTAGTTCTATTTTTGGAAAATTAAAAA-----AAAAAAAACTCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTG-TGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAGGTACATATCCATCATTTTTTCTTTCATTTACCTAATTATAACGACAGCAACATACTCAGTGAAATTCCGGGACCCGAAAAGAATAGTAGGTGTATGTAAAATCACCTAATTATCCTTATTTTTTGTTTGTGGTAGCTAGATTAGTTGTTTTCTAGACTAAAAAAAAGAAATTGGGAATAATTTTTGATTAGTTATTAAATAATAACGTATTTAGTAAAATTTTAGAAATGAATTTTGAGTAAAGTGATGTGTATGTGTATTTTATCTATAGGGTAGAGAGGTTTTTTCCGATGAATTTTAGGGCTAATTTAACAAGTGAAAATTAAAGTAATGATTTTTGTTAATTTTTTGTGAGGAATGAAGTTTTTTTTTTTTTTTTGGGTATTTTCTAAATGGGTGACTTTAGTTAGTCATGATTGAGGAGAATGATTAGAATTATTGAGTTTTGGATTTTTGTAAATATAGTTTATTAATTAATTATTATATTAAATGGATTTTTAGGTATAAATTTAGGGTTTGATTTTAAGTTATTGAGTTTTGTTGAATTCTTAGGAAAAGTTCTTCGCTGTTGTTTACAAATGGGTGTCTTTAAGCTAGTCATGATTGACAAGAATTATATCGAGTTATTTAAATTCTGAAAGAAGATTTTGATAAATTGTTTATATATGTAAAAAGTGAGATTTTATAATATAAATTTAAAAATTTGATCAAAAGCTATTAGATTTCATCGTGCCCGCATACAAATCTCTTCTCTATTATTTAACAAGTTATGTGCACTGATAATATTACTAATATACTTTAATTTGTTATAATACCAATTAAGTTACATAGTTTAATTTGTGTAGAAGTTAAGTTACTACTTTTGTCAAGTAATTTACTTATTAATTACTACATGGTTTTCACATAACATAAACACTTGCTATATTTAGCAACTATTGAGAAACCCACCTCAAGAAACTTTCTATTTTGTGTCATTTATTGACTCTTTTTTTTAGGTAAATAATTAATGAAAAAAACTTGAATTTTGTATTAGAAAACAAAGCTTCTAAAGACTCAATTTTTATTTAAAAAGGAATCAGAAAAAATGGAGAATAAACAATAATACCAACACAAAATGAGTGGTGTAGGAAGTAGTTAGTAGTTACCAGGTTATAAGAATTTTATGTTGTTTAAATTCTTCAAAAATATTATTACATTATATTAGATCATTTTATAACATGTAGTAATTTTTGATGATTTGATGTGTCAATGTAAATTTTATTCTTTTGGATTGAAAATATATATTTTCGCACACAATGACATTATTAAAGGATTCACAGAATATATATGTCAATTTCATTTATGAAATTCAAAAATTTTGTTACATTATTAATTAAATTGACTTGTAATAACAAATAATATTTTAAAGCTTAGATAGAACAATAAAAAAATAAAAGGGAATAAATTTAGCTGGATAATGTTATCGAAAGGGCCACCATATCTTATCTGTTTCACAGAAAGGCAATAATATTATATCTTATAATATAAAAATAAATATTATCATGGGAACTATATATTTATGGTGAATAGGACAAACTCCTTTTAATGGGGAAAAAAAGAAGCATATTTTAGGAATTTTATGTTTTTTTTTTGTATGGTATAAGTAAAAAGTAACAAATTTGATGAGCTATTTTTTTGAGGTGGTTGTGTGTGGTATATAAAATAATTGTTTTCCCCCTCTACAAGTAAATGTTTTAAGAAAGCTATAATGAACTCTCTTCATTCGGTATTGTTTGTCATAATTTTTATTTTTAGAGTTAAATTATGAAAATTTTGACTTACATTTTAAGATGTATTTTTTAATCATATTAATATGTAAAAAATTGTAATTTATAGTATTTTCCATATAATTTTAGGATATCTAATTTTTTTGTTTAAAATATCGAATTAATCTGATCTAATTTACCTTTGAAAATTAATCAAGTGACTTTAGATAAGTGCATCATGATAAACAATTCCGGACGAAGGGTGTATAATTAATCTACATTTTAATAATTTGATTTTTTTTTTATAATTCACTTATTTATCATCCTCGATATTTAAGCTTATTGAGTGTGTCATATATCAAAGATTAATAGATCGTCTTTTTATAGTCTTGAATAATCTTATACTTCATAGGTTTATTACTTTTGAAGTTGAGTCAGACTTATCCTTAGCTATTAGTATTATGTCGTTAAGTTGATAGGCCTGCTCGAATGGGGAAGAGGTGTTATCTATCCCACATTAGTTGACGGATGAGTTGTTTATGTCGGTGTTAAGCAATATTTTTCATTTGAGATTGAGTTAGATCTAAAGTCAATTTTCTCGACAGAAATTACAAATTTGTCTTTTACTTTCTTTGATGTTGTGTTCATGTGTCCCTAATATATTGGATACATGACACATACATACATTCTTCAAAGGAATTTAATATTTATGTATGTATCGACATCATAATTGATCACATAAAAGATAACTATATATAATTCTACCGTTCATCAATGATTTACGTACGATCTTAATATTTTTAATTTCTCATGAAGCATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAAT-GAGGGGAGAAGAACTTCAAGGACTAAA-TATTGAAG-AGTTGCAAC</genome_strand>
        <mrna_strand>ATTCTTTGTTCCCTCTTTTATAAATTCCCTCTTCCTTCTTAACTCTCTTAGTTCTATTTTTGGAAAATTAAAAAGAGAGAAAAAAAACCCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGAAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTTTGTTTATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGCAAATTATTTGACTATTCTAACTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATTTGGAAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAGAATAGCAATTACTCCAGATTAAGCAAGGAAATTTCCGAAAGAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATCGAGGGGAGAAGAACTTCAAGGACTAAACTATTGAAGCAGTTGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201380" ref_strand="+" ref_description="SGN-E201380 [cLEC-4-D13]">
      <seq>aaaaaaaaaactcctaatggcttgagaaaaaattcagatcaagaaaatagataactccacagcaagacaagttacattttcaaagaggagaagaggtttattcaagaaagctgaagaactttctgttctctgtgatgctgatgttgctctcatcattttctcttctactggaaaattatttgactattctagctcaagcatgaaacaaattcttgagaggcgtgatttgcattccaaaaatctggaaaaattggatcaaccatcacttgaacttcagcttgtagaaaatagcaactactccagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="96742" stop="93198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96442" g_stop="96245" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96244" i_stop="93684" i_length="2561">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93683" g_stop="93605" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="277" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93604" i_stop="93527" i_length="78">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93526" g_stop="93498" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="306" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E201380" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96442" e_stop="96245"/>
          <exon e_start="93683" e_stop="93605"/>
          <exon e_start="93526" e_stop="93498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAACTCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAGGTACATATCCATCATTTTTTCTTTCATTTACCTAATTATAACGACAGCAACATACTCAGTGAAATTCCGGGACCCGAAAAGAATAGTAGGTGTATGTAAAATCACCTAATTATCCTTATTTTTTGTTTGTGGTAGCTAGATTAGTTGTTTTCTAGACTAAAAAAAAGAAATTGGGAATAATTTTTGATTAGTTATTAAATAATAACGTATTTAGTAAAATTTTAGAAATGAATTTTGAGTAAAGTGATGTGTATGTGTATTTTATCTATAGGGTAGAGAGGTTTTTTCCGATGAATTTTAGGGCTAATTTAACAAGTGAAAATTAAAGTAATGATTTTTGTTAATTTTTTGTGAGGAATGAAGTTTTTTTTTTTTTTTTGGGTATTTTCTAAATGGGTGACTTTAGTTAGTCATGATTGAGGAGAATGATTAGAATTATTGAGTTTTGGATTTTTGTAAATATAGTTTATTAATTAATTATTATATTAAATGGATTTTTAGGTATAAATTTAGGGTTTGATTTTAAGTTATTGAGTTTTGTTGAATTCTTAGGAAAAGTTCTTCGCTGTTGTTTACAAATGGGTGTCTTTAAGCTAGTCATGATTGACAAGAATTATATCGAGTTATTTAAATTCTGAAAGAAGATTTTGATAAATTGTTTATATATGTAAAAAGTGAGATTTTATAATATAAATTTAAAAATTTGATCAAAAGCTATTAGATTTCATCGTGCCCGCATACAAATCTCTTCTCTATTATTTAACAAGTTATGTGCACTGATAATATTACTAATATACTTTAATTTGTTATAATACCAATTAAGTTACATAGTTTAATTTGTGTAGAAGTTAAGTTACTACTTTTGTCAAGTAATTTACTTATTAATTACTACATGGTTTTCACATAACATAAACACTTGCTATATTTAGCAACTATTGAGAAACCCACCTCAAGAAACTTTCTATTTTGTGTCATTTATTGACTCTTTTTTTTAGGTAAATAATTAATGAAAAAAACTTGAATTTTGTATTAGAAAACAAAGCTTCTAAAGACTCAATTTTTATTTAAAAAGGAATCAGAAAAAATGGAGAATAAACAATAATACCAACACAAAATGAGTGGTGTAGGAAGTAGTTAGTAGTTACCAGGTTATAAGAATTTTATGTTGTTTAAATTCTTCAAAAATATTATTACATTATATTAGATCATTTTATAACATGTAGTAATTTTTGATGATTTGATGTGTCAATGTAAATTTTATTCTTTTGGATTGAAAATATATATTTTCGCACACAATGACATTATTAAAGGATTCACAGAATATATATGTCAATTTCATTTATGAAATTCAAAAATTTTGTTACATTATTAATTAAATTGACTTGTAATAACAAATAATATTTTAAAGCTTAGATAGAACAATAAAAAAATAAAAGGGAATAAATTTAGCTGGATAATGTTATCGAAAGGGCCACCATATCTTATCTGTTTCACAGAAAGGCAATAATATTATATCTTATAATATAAAAATAAATATTATCATGGGAACTATATATTTATGGTGAATAGGACAAACTCCTTTTAATGGGGAAAAAAAGAAGCATATTTTAGGAATTTTATGTTTTTTTTTTGTATGGTATAAGTAAAAAGTAACAAATTTGATGAGCTATTTTTTTGAGGTGGTTGTGTGTGGTATATAAAATAATTGTTTTCCCCCTCTACAAGTAAATGTTTTAAGAAAGCTATAATGAACTCTCTTCATTCGGTATTGTTTGTCATAATTTTTATTTTTAGAGTTAAATTATGAAAATTTTGACTTACATTTTAAGATGTATTTTTTAATCATATTAATATGTAAAAAATTGTAATTTATAGTATTTTCCATATAATTTTAGGATATCTAATTTTTTTGTTTAAAATATCGAATTAATCTGATCTAATTTACCTTTGAAAATTAATCAAGTGACTTTAGATAAGTGCATCATGATAAACAATTCCGGACGAAGGGTGTATAATTAATCTACATTTTAATAATTTGATTTTTTTTTTATAATTCACTTATTTATCATCCTCGATATTTAAGCTTATTGAGTGTGTCATATATCAAAGATTAATAGATCGTCTTTTTATAGTCTTGAATAATCTTATACTTCATAGGTTTATTACTTTTGAAGTTGAGTCAGACTTATCCTTAGCTATTAGTATTATGTCGTTAAGTTGATAGGCCTGCTCGAATGGGGAAGAGGTGTTATCTATCCCACATTAGTTGACGGATGAGTTGTTTATGTCGGTGTTAAGCAATATTTTTCATTTGAGATTGAGTTAGATCTAAAGTCAATTTTCTCGACAGAAATTACAAATTTGTCTTTTACTTTCTTTGATGTTGTGTTCATGTGTCCCTAATATATTGGATACATGACACATACATACATTCTTCAAAGGAATTTAATATTTATGTATGTATCGACATCATAATTGATCACATAAAAGATAACTATATATAATTCTACCGTTCATCAATGATTTACGTACGATCTTAATATTTTTAATTTCTCATGAAGCATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATT</genome_strand>
        <mrna_strand>AAAAAAAAAACTCCTAATGGCTTGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466526" ref_strand="+" ref_description="SGN-E466526 [cPRO-24-B20]">
      <seq>cttaactctcttagttctatttttggaaaattaaaaagagaaaaaaaaaacccctaatggctagagaaaaaattcagatcaagaaaatagataactccacagcaagacaagttacattttcaaagagaagaagaggtttattcaagaaagctgaagaactttctggtctttgtgatgctgatgttgctcctatcattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-AyMhX/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C11HBa0107K14.2" temp_strand="-" temp_description="C11HBa0107K14.2  AC212435.2 htgs_phase:3 submitted_to_sgn_as:gi|166159193|gb|AC212435.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0107K14, complete sequence">
        <position start="96777" stop="95982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96477" g_stop="96282" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.2" gen_strand="-" ref_id="SGN-E466526" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96477" e_stop="96282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAACTCTCTTAGTTCTATTTTTGGAAAATT--AAA-A-AA-AAAAAAACTCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCT</genome_strand>
        <mrna_strand>CTTAACTCTCTTAGTTCTATTTTTGGAAAATTAAAAAGAGAAAAAAAAAACCCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGAAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGGTCTTTGTGATGCTGATGTTGCTCCTATCATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>192</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="293" PGL_stop="753"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="293" e_stop="753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="293" e_stop="753" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="293" stop="753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTAAGTAATATGAGGCATCCTCATATGCTATCGATGATCGGATATTGCTCTGAGCTAAGGTGCATCGTGTTCGAGTATATGCACAATGGTTGCTTAAGAGACATTCTCTTCTCAGGCACCAGAGGCTCTAAAAGGAGGAATAAGGGCCTAAACTGGCAAGCTAGGATATGTATTGTAGCCAATGTCTGTACTGGCTTGTGCTTCCTCCATCATGCCAAGCCAACGCCCGTGGCTCATGGCAACCTGAACCCTTCAAAAATCCTTCTTGATCATAACTATATGGCGAAAATCCATGGTGTTAGGACACCTCTGTCATGTGACAGATCGAATATGAGATCAGATATCCGGGCTTATGGGAACTTAGTCTTACAGATTCTGACTGGAAGAAACTGGGCGGGGTTGGTTGAGGAGGCGATTATGATGGACCAGAGTAAGCTTATTGAAGTGCTTGATCCGAT</gDNA_template>
            <first_frame> F  L  S  N  M  R  H  P  H  M  L  S  M  I  G  Y  C  S  E  L  R  C  I  V  F  E  Y  M  H  N  G  C  L  R  D  I  L  F  S  G  T  R  G  S  K  R  R  N  K  G  L  N  W  Q  A  R  I  C  I  V  A  N  V  C  T  G  L  C  F  L  H  H  A  K  P  T  P  V  A  H  G  N  L  N  P  S  K  I  L  L  D  H  N  Y  M  A  K  I  H  G  V  R  T  P  L  S  C  D  R  S  N  M  R  S  D  I  R  A  Y  G  N  L  V  L  Q  I  L  T  G  R  N  W  A  G  L  V  E  E  A  I  M  M  D  Q  S  K  L  I  E  V  L  D  P   </first_frame>
            <second_frame>  S  *  V  I  *  G  I  L  I  C  Y  R  *  S  D  I  A  L  S  *  G  A  S  C  S  S  I  C  T  M  V  A  *  E  T  F  S  S  Q  A  P  E  A  L  K  G  G  I  R  A  *  T  G  K  L  G  Y  V  L  *  P  M  S  V  L  A  C  A  S  S  I  M  P  S  Q  R  P  W  L  M  A  T  *  T  L  Q  K  S  F  L  I  I  T  I  W  R  K  S  M  V  L  G  H  L  C  H  V  T  D  R  I  *  D  Q  I  S  G  L  M  G  T  *  S  Y  R  F  *  L  E  E  T  G  R  G  W  L  R  R  R  L  *  W  T  R  V  S  L  L  K  C  L  I  R  </second_frame>
            <third_frame>   L  K  *  Y  E  A  S  S  Y  A  I  D  D  R  I  L  L  *  A  K  V  H  R  V  R  V  Y  A  Q  W  L  L  K  R  H  S  L  L  R  H  Q  R  L  *  K  E  E  *  G  P  K  L  A  S  *  D  M  Y  C  S  Q  C  L  Y  W  L  V  L  P  P  S  C  Q  A  N  A  R  G  S  W  Q  P  E  P  F  K  N  P  S  *  S  *  L  Y  G  E  N  P  W  C  *  D  T  S  V  M  *  Q  I  E  Y  E  I  R  Y  P  G  L  W  E  L  S  L  T  D  S  D  W  K  K  L  G  G  V  G  *  G  G  D  Y  D  G  P  E  *  A  Y  *  S  A  *  S  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="293" stop="751"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSNMRHPHMLSMIGYCSELRCIVFEYMHNGCLRDILFSGTRGSKRRNKGLNWQARICIVANVCTGLCFLHHAKPTPVAHGNLNPSKILLDHNYMAKIHGVRTPLSCDRSNMRSDIRAYGNLVLQILTGRNWAGLVEEAIMMDQSKLIEVLDP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16189" PGL_stop="15593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16189" e_stop="15593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="16189" e_stop="15593" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16189" stop="15593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16180" stop="15598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16110" stop="15664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16110" stop="15664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16109" stop="15674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16059" stop="15598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACATTATAATTTTAAAATAAATTATTCCGTAATTTTATCCGAACCCTTGCACCTTTCCTGATTCTCGTTTTTAATCACAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAAATACTCTTCAATTTTATTGTTCTACGTGTTAAGCTTGATGTTAATCTGGATTAGAAATTTCAAATAGTGGA</gDNA_template>
            <first_frame> *  H  Y  N  F  K  I  N  Y  S  V  I  L  S  E  P  L  H  L  S  *  F  S  F  L  I  T  R  S  *  H  Y  S  K  F  P  N  Q  N  V  L  R  R  S  T  I  T  V  K  R  R  L  N  R  P  D  P  T  D  P  N  F  T  G  G  E  R  E  R  S  G  G  *  K  S  S  G  P  V  S  *  D  G  G  A  A  G  T  S  *  G  S  G  S  G  A  E  P  A  A  G  R  D  E  E  V  R  L  R  Y  G  N  S  G  M  L  P  Q  A  P  I  Q  G  T  A  S  *  N  P  S  S  G  K  F  E  V  K  M  I  F  M  W  L  K  W  I  I  R  V  S  *  F  M  *  S  C  V  L  *  L  Y  I  L  Q  C  D  I  E  L  L  I  Y  *  T  *  N  T  L  Q  F  Y  C  S  T  C  *  A  *  C  *  S  G  L  E  I  S  N  S  G </first_frame>
            <second_frame>  D  I  I  I  L  K  *  I  I  P  *  F  Y  P  N  P  C  T  F  P  D  S  R  F  *  S  Q  D  R  N  T  I  P  N  F  P  I  K  M  C  Y  G  G  Q  R  L  P  S  K  D  D  L  T  D  P  T  R  R  T  R  T  L  P  A  A  N  E  N  A  V  V  V  E  N  L  R  D  R  L  A  E  T  E  A  R  L  E  R  A  R  A  R  E  A  E  L  S  R  Q  L  E  E  M  K  R  Y  V  C  V  M  E  I  L  E  C  Y  L  K  R  R  Y  R  E  Q  Q  V  R  T  L  A  V  V  N  S  K  *  R  *  F  L  C  G  *  N  G  L  L  G  F  R  D  L  C  N  H  V  C  C  N  C  I  F  F  S  V  I  *  N  C  *  S  I  E  L  E  I  L  F  N  F  I  V  L  R  V  K  L  D  V  N  L  D  *  K  F  Q  I  V   </second_frame>
            <third_frame>   T  L  *  F  *  N  K  L  F  R  N  F  I  R  T  L  A  P  F  L  I  L  V  F  N  H  K  I  V  T  L  F  Q  I  S  Q  S  K  C  V  T  A  V  N  D  Y  R  Q  K  T  T  *  P  T  R  P  D  G  P  E  L  Y  R  R  R  T  R  T  Q  W  W  L  K  I  F  G  T  G  *  L  R  R  R  R  G  W  N  E  L  G  L  G  K  R  S  *  A  G  S  W  K  R  *  R  G  T  S  A  L  W  K  F  W  N  V  T  S  S  A  D  T  G  N  S  K  L  E  P  *  Q  W  *  I  R  S  K  D  D  F  Y  V  V  K  M  D  Y  *  G  F  V  I  Y  V  I  M  C  V  V  I  V  Y  S  S  V  *  Y  R  I  V  N  L  L  N  L  K  Y  S  S  I  L  L  F  Y  V  L  S  L  M  L  I  W  I  R  N  F  K  *  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16113" stop="15781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQDRNTIPNFPIKMCYGGQRLPSKDDLTDPTRRTRTLPAANENAVVVENLRDRLAETEARLERARAREAELSRQLEEMKRYVCVMEILECYLKRRYREQQVRTLAVVNSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22716" PGL_stop="23439"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22716" e_stop="23439"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="22716" e_stop="23439" e_length="724"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22716" stop="23439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720619" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACACAAAAAAATAATAAAACCCCACTTAATGTATACACAAACTAGTTGTAAAAGAAGAACTCCAACTATATCCATGACAAACTCTACATCATTCACATTACAATGTGTTCAAACCTTATTGATCATATTCAATTTTATTGCTACAATATATCGAGCATATTCTAACAGTCAATATTCGTTCTTAGCTTTCATCTTTTTCATATATTTTAGTGCTTACTTGGCAAATAACTTATCATCTACATATCGAAACATTCAATCGAAAAATAAGTCTTTTGAGAAGAGCTTGTTGGGATTTGCTATATGGTTCTTGTATTCTTCCATTATTTTTGGGTTTGTTTATCAATTTTATCCATTTTTTGGATTTTGGGCTGGTCTTCCTATTCATATTGTAGCCATAATTATTAGTGGGGTTGTGTTCTATGACTATGTCATTTGTGATAAACAAGATGGAGATAATAGTCATAATTTTAGGTATTTTGGTAGTAGCAATGATCAAATGAAGAGGGGTTATTATTGTGAAGAAAAATGGGAGGTCATTTGGGAAAAAGTTTGAGTTACTAAGGAAATTTCAGTACATTTCACGGATTCGAGATAGGACTGAATCACTAAGATTTATTGTACGTAATTTTATCTACAAATATTTGTGTTATTAGGAAGTAACAAGGCGTGTTTGTTTGTACACTAGTACCAATCTCAATGTTATGTGTTAAATTTCCCCAAAA</gDNA_template>
            <first_frame> T  H  K  K  I  I  K  P  H  L  M  Y  T  Q  T  S  C  K  R  R  T  P  T  I  S  M  T  N  S  T  S  F  T  L  Q  C  V  Q  T  L  L  I  I  F  N  F  I  A  T  I  Y  R  A  Y  S  N  S  Q  Y  S  F  L  A  F  I  F  F  I  Y  F  S  A  Y  L  A  N  N  L  S  S  T  Y  R  N  I  Q  S  K  N  K  S  F  E  K  S  L  L  G  F  A  I  W  F  L  Y  S  S  I  I  F  G  F  V  Y  Q  F  Y  P  F  F  G  F  W  A  G  L  P  I  H  I  V  A  I  I  I  S  G  V  V  F  Y  D  Y  V  I  C  D  K  Q  D  G  D  N  S  H  N  F  R  Y  F  G  S  S  N  D  Q  M  K  R  G  Y  Y  C  E  E  K  W  E  V  I  W  E  K  V  *  V  T  K  E  I  S  V  H  F  T  D  S  R  *  D  *  I  T  K  I  Y  C  T  *  F  Y  L  Q  I  F  V  L  L  G  S  N  K  A  C  L  F  V  H  *  Y  Q  S  Q  C  Y  V  L  N  F  P  K  </first_frame>
            <second_frame>  H  T  K  K  *  *  N  P  T  *  C  I  H  K  L  V  V  K  E  E  L  Q  L  Y  P  *  Q  T  L  H  H  S  H  Y  N  V  F  K  P  Y  *  S  Y  S  I  L  L  L  Q  Y  I  E  H  I  L  T  V  N  I  R  S  *  L  S  S  F  S  Y  I  L  V  L  T  W  Q  I  T  Y  H  L  H  I  E  T  F  N  R  K  I  S  L  L  R  R  A  C  W  D  L  L  Y  G  S  C  I  L  P  L  F  L  G  L  F  I  N  F  I  H  F  L  D  F  G  L  V  F  L  F  I  L  *  P  *  L  L  V  G  L  C  S  M  T  M  S  F  V  I  N  K  M  E  I  I  V  I  I  L  G  I  L  V  V  A  M  I  K  *  R  G  V  I  I  V  K  K  N  G  R  S  F  G  K  K  F  E  L  L  R  K  F  Q  Y  I  S  R  I  R  D  R  T  E  S  L  R  F  I  V  R  N  F  I  Y  K  Y  L  C  Y  *  E  V  T  R  R  V  C  L  Y  T  S  T  N  L  N  V  M  C  *  I  S  P  K </second_frame>
            <third_frame>   T  Q  K  N  N  K  T  P  L  N  V  Y  T  N  *  L  *  K  K  N  S  N  Y  I  H  D  K  L  Y  I  I  H  I  T  M  C  S  N  L  I  D  H  I  Q  F  Y  C  Y  N  I  S  S  I  F  *  Q  S  I  F  V  L  S  F  H  L  F  H  I  F  *  C  L  L  G  K  *  L  I  I  Y  I  S  K  H  S  I  E  K  *  V  F  *  E  E  L  V  G  I  C  Y  M  V  L  V  F  F  H  Y  F  W  V  C  L  S  I  L  S  I  F  W  I  L  G  W  S  S  Y  S  Y  C  S  H  N  Y  *  W  G  C  V  L  *  L  C  H  L  *  *  T  R  W  R  *  *  S  *  F  *  V  F  W  *  *  Q  *  S  N  E  E  G  L  L  L  *  R  K  M  G  G  H  L  G  K  S  L  S  Y  *  G  N  F  S  T  F  H  G  F  E  I  G  L  N  H  *  D  L  L  Y  V  I  L  S  T  N  I  C  V  I  R  K  *  Q  G  V  F  V  C  T  L  V  P  I  S  M  L  C  V  K  F  P  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22716" stop="23270"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THKKIIKPHLMYTQTSCKRRTPTISMTNSTSFTLQCVQTLLIIFNFIATIYRAYSNSQYSFLAFIFFIYFSAYLANNLSSTYRNIQSKNKSFEKSLLGFAIWFLYSSIIFGFVYQFYPFFGFWAGLPIHIVAIIISGVVFYDYVICDKQDGDNSHNFRYFGSSNDQMKRGYYCEEKWEVIWEKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23454" PGL_stop="22916"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23454" e_stop="22916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="23454" e_stop="22916" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23454" stop="22916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTCAAACTGATTTTTGGGGAAATTTAACACATAACATTGAGATTGGTACTAGTGTACAAACAAACACGCCTTGTTACTTCCTAATAACACAAATATTTGTAGATAAAATTACGTACAATAAATCTTAGTGATTCAGTCCTATCTCGAATCCGTGAAATGTACTGAAATTTCCTTAGTAACTCAAACTTTTTCCCAAATGACCTCCCATTTTTCTTCACAATAATAACCCCTCTTCATTTGATCATTGCTACTACCAAAATACCTAAAATTATGACTATTATCTCCATCTTGTTTATCACAAATGACATAGTCATAGAACACAACCCCACTAATAATTATGGCTACAATATGAATAGGAAGACCAGCCCAAAATCCAAAAAATGGATAAAATTGATAAACAAACCCAAAAATAATGGAAGAATACAAGAACCATATAGCAAATCCCAACAAGCTCTTCTCAAAAGACTTATTTTTCGATTGAATGTTTCGATATGTAGATGATAAGTTATTTGCCAAGTAAGCACTAAAATATATG</gDNA_template>
            <first_frame> L  S  Q  T  D  F  W  G  N  L  T  H  N  I  E  I  G  T  S  V  Q  T  N  T  P  C  Y  F  L  I  T  Q  I  F  V  D  K  I  T  Y  N  K  S  *  *  F  S  P  I  S  N  P  *  N  V  L  K  F  P  *  *  L  K  L  F  P  K  *  P  P  I  F  L  H  N  N  N  P  S  S  F  D  H  C  Y  Y  Q  N  T  *  N  Y  D  Y  Y  L  H  L  V  Y  H  K  *  H  S  H  R  T  Q  P  H  *  *  L  W  L  Q  Y  E  *  E  D  Q  P  K  I  Q  K  M  D  K  I  D  K  Q  T  Q  K  *  W  K  N  T  R  T  I  *  Q  I  P  T  S  S  S  Q  K  T  Y  F  S  I  E  C  F  D  M  *  M  I  S  Y  L  P  S  K  H  *  N  I   </first_frame>
            <second_frame>  F  L  K  L  I  F  G  E  I  *  H  I  T  L  R  L  V  L  V  Y  K  Q  T  R  L  V  T  S  *  *  H  K  Y  L  *  I  K  L  R  T  I  N  L  S  D  S  V  L  S  R  I  R  E  M  Y  *  N  F  L  S  N  S  N  F  F  P  N  D  L  P  F  F  F  T  I  I  T  P  L  H  L  I  I  A  T  T  K  I  P  K  I  M  T  I  I  S  I  L  F  I  T  N  D  I  V  I  E  H  N  P  T  N  N  Y  G  Y  N  M  N  R  K  T  S  P  K  S  K  K  W  I  K  L  I  N  K  P  K  N  N  G  R  I  Q  E  P  Y  S  K  S  Q  Q  A  L  L  K  R  L  I  F  R  L  N  V  S  I  C  R  *  *  V  I  C  Q  V  S  T  K  I  Y  </second_frame>
            <third_frame>   F  S  N  *  F  L  G  K  F  N  T  *  H  *  D  W  Y  *  C  T  N  K  H  A  L  L  L  P  N  N  T  N  I  C  R  *  N  Y  V  Q  *  I  L  V  I  Q  S  Y  L  E  S  V  K  C  T  E  I  S  L  V  T  Q  T  F  S  Q  M  T  S  H  F  S  S  Q  *  *  P  L  F  I  *  S  L  L  L  P  K  Y  L  K  L  *  L  L  S  P  S  C  L  S  Q  M  T  *  S  *  N  T  T  P  L  I  I  M  A  T  I  *  I  G  R  P  A  Q  N  P  K  N  G  *  N  *  *  T  N  P  K  I  M  E  E  Y  K  N  H  I  A  N  P  N  K  L  F  S  K  D  L  F  F  D  *  M  F  R  Y  V  D  D  K  L  F  A  K  *  A  L  K  Y  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23285" stop="22950"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFLSNSNFFPNDLPFFFTIITPLHLIIATTKIPKIMTIISILFITNDIVIEHNPTNNYGYNMNRKTSPKSKKWIKLINKPKNNGRIQEPYSKSQQALLKRLIFRLNVSICR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="26875" PGL_stop="30037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26915" e_stop="27179"/>
            <exon e_start="28050" e_stop="28370"/>
            <exon e_start="28796" e_stop="28929"/>
            <exon e_start="29287" e_stop="29459"/>
            <exon e_start="29650" e_stop="30037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26915" e_stop="27179" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.974">
            <gDNA_intron_boundary i_start="27180" i_stop="28049" i_length="870"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28050" e_stop="28370" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="0.886" acc_prob="0.913">
            <gDNA_intron_boundary i_start="28371" i_stop="28795" i_length="425"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28796" e_stop="28929" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28930" i_stop="29286" i_length="357"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29287" e_stop="29459" e_length="173"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="29460" i_stop="29649" i_length="190"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="29650" e_stop="30037" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26915" stop="27179"/>
              <exon start="28050" stop="28370"/>
              <exon start="28796" stop="28929"/>
              <exon start="29287" stop="29312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28099" stop="28370"/>
              <exon start="28796" stop="28929"/>
              <exon start="29287" stop="29459"/>
              <exon start="29650" stop="30037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28292" stop="28370"/>
              <exon start="28796" stop="28929"/>
              <exon start="29287" stop="29459"/>
              <exon start="29650" stop="29814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583166" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCGGCTTTGCCACCCAGGAGTGATGTGGGTGCTTATATGGAAGCTGAGCTGGGAATGAAGATTGCTTGTGGATTTGAGATGATTTATCAGTTGAAAAAGAGGCAGGGCATGGACGGAAAAGGGAGTACATGGGATGCGTTTAGGCTGAGTCTAGAGCGGAGTGGGTACTTCGAAGGGCTGTTACCAGGATCGAAGGAGTATAAAAGATTGATGAAGAATGCTGAGGAGTATTACAAGAATAGTTCACTGCATGCAAGAGAAAG : TGCTACACTAAGTGCTCCAGTGCGAAGAATAGATGAGATCCTTGCCCTTCCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAG : GAATGTAAAGGAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCG : ATGAATCTGAAGATGAGAGTGATATTGCCGAGCCACATGATGATAATGATGAGGGAGGTGCTGCTTTCATGCATTCGTATTCGGACACTCTGAATGATGAACTGAAAGGCACCACACTAAGTAATACCTTTGTCCGCGCAAATGGAGAGTCTGAGTCCATAAAGAAAGATGAG : GGAACATCTACTGCTGCAGAAAACATGGAAGAGGAGGATTTCAGTCCTGTAGATGTTGATTTCAATCTTGTAAAGAATTTCCTGGATTCGTTTTCTTCTCAAGATGGACTTCCAGGACCTGCTTCTAACTTGCTTGGACTTATGGGTCTACAGCTACCACCAGATGCTAGCAAAGGGAAATAACCATATTATACACAAACTTGTTTCCTCATTCTTCTTTTCCTTGCCTTTTTCTAAACGGCAATCTTTACAATACTATGTATTACGTATGTTTTAACTTCAAACGGAGAAAAAAGGAGGAGGTGGATTTATGTGGTATTTTTCATTTTTGACCATCAAATAATTTATATATTGATAAATTATGTAAAAAATATTATAAGTTGACGAA</gDNA_template>
            <first_frame> I  R  L  C  H  P  G  V  M  W  V  L  I  W  K  L  S  W  E  *  R  L  L  V  D  L  R  *  F  I  S  *  K  R  G  R  A  W  T  E  K  G  V  H  G  M  R  L  G  *  V  *  S  G  V  G  T  S  K  G  C  Y  Q  D  R  R  S  I  K  D  *  *  R  M  L  R  S  I  T  R  I  V  H  C  M  Q  E  K   : V  L  H  *  V  L  Q  C  E  E  *  M  R  S  L  P  F  L  I  L  L  M  T  L  R  I  R  R  Y  R  H  L  M  M  I  H  G  F  M  V  E  R  M  S  *  I  P  F  F  K  R  G  K  R  R  W  N  F  T  I  Q  K  G  N  R  N  Q  K  S  R  M  G  P  A  I  I  L  I  I  L  I  *  K  I  Y  R  T  L  C  K  H  L  S  Q  K  W  P  V  M  K  V  Q  R  F  Q  R  T   : G  M  *  R  K  W  T  L  M  S  I  T  L  *  K  T  W  N  R  L  *  G  V  R  A  M  K  T  L  A  V  M  L  I  L  K  K  G  H  H  Q  I  W  S  S  :  M  N  L  K  M  R  V  I  L  P  S  H  M  M  I  M  M  R  E  V  L  L  S  C  I  R  I  R  T  L  *  M  M  N  *  K  A  P  H  *  V  I  P  L  S  A  Q  M  E  S  L  S  P  *  R  K  M  R :   E  H  L  L  L  Q  K  T  W  K  R  R  I  S  V  L  *  M  L  I  S  I  L  *  R  I  S  W  I  R  F  L  L  K  M  D  F  Q  D  L  L  L  T  C  L  D  L  W  V  Y  S  Y  H  Q  M  L  A  K  G  N  N  H  I  I  H  K  L  V  S  S  F  F  F  S  L  P  F  S  K  R  Q  S  L  Q  Y  Y  V  L  R  M  F  *  L  Q  T  E  K  K  G  G  G  G  F  M  W  Y  F  S  F  L  T  I  K  *  F  I  Y  *  *  I  M  *  K  I  L  *  V  D  E </first_frame>
            <second_frame>  S  G  F  A  T  Q  E  *  C  G  C  L  Y  G  S  *  A  G  N  E  D  C  L  W  I  *  D  D  L  S  V  E  K  E  A  G  H  G  R  K  R  E  Y  M  G  C  V  *  A  E  S  R  A  E  W  V  L  R  R  A  V  T  R  I  E  G  V  *  K  I  D  E  E  C  *  G  V  L  Q  E  *  F  T  A  C  K  R  K  :  C  Y  T  K  C  S  S  A  K  N  R  *  D  P  C  P  S  *  F  C  *  *  L  *  G  S  G  D  T  A  I  *  *  *  F  M  A  L  W  W  R  G  *  A  K  F  R  S  S  R  E  A  K  G  D  G  T  L  Q  F  K  K  E  T  E  I  K  R  A  G  W  A  Q  Q  S  F  *  *  F  *  S  K  R  Y  I  E  L  Y  A  S  I  C  H  K  S  G  Q  L  *  R  C  R  G  S  R  G  Q  :  E  C  K  G  S  G  L  *  C  R  S  L  Y  E  R  P  G  I  V  Y  E  G  S  G  Q  *  R  H  W  P  *  C  *  Y  *  R  R  V  I  I  R  Y  G  V  R :   *  I  *  R  *  E  *  Y  C  R  A  T  *  *  *  *  *  G  R  C  C  F  H  A  F  V  F  G  H  S  E  *  *  T  E  R  H  H  T  K  *  Y  L  C  P  R  K  W  R  V  *  V  H  K  E  R  *   : G  N  I  Y  C  C  R  K  H  G  R  G  G  F  Q  S  C  R  C  *  F  Q  S  C  K  E  F  P  G  F  V  F  F  S  R  W  T  S  R  T  C  F  *  L  A  W  T  Y  G  S  T  A  T  T  R  C  *  Q  R  E  I  T  I  L  Y  T  N  L  F  P  H  S  S  F  P  C  L  F  L  N  G  N  L  Y  N  T  M  Y  Y  V  C  F  N  F  K  R  R  K  K  E  E  V  D  L  C  G  I  F  H  F  *  P  S  N  N  L  Y  I  D  K  L  C  K  K  Y  Y  K  L  T   </second_frame>
            <third_frame>   P  A  L  P  P  R  S  D  V  G  A  Y  M  E  A  E  L  G  M  K  I  A  C  G  F  E  M  I  Y  Q  L  K  K  R  Q  G  M  D  G  K  G  S  T  W  D  A  F  R  L  S  L  E  R  S  G  Y  F  E  G  L  L  P  G  S  K  E  Y  K  R  L  M  K  N  A  E  E  Y  Y  K  N  S  S  L  H  A  R  E  S :   A  T  L  S  A  P  V  R  R  I  D  E  I  L  A  L  P  D  S  A  D  D  F  K  D  Q  E  I  P  P  S  D  D  D  S  W  L  Y  G  G  E  D  E  L  N  S  V  L  Q  E  R  Q  K  E  M  E  L  Y  N  S  K  R  K  Q  K  S  K  E  Q  D  G  P  S  N  H  S  D  N  F  D  L  K  D  I  S  N  S  M  Q  A  F  V  T  K  V  A  S  Y  E  G  A  E  V  P  E  D  R :   N  V  K  E  V  D  F  D  V  D  H  F  M  K  D  L  E  S  F  M  R  G  Q  G  N  E  D  I  G  R  D  V  D  I  E  E  G  S  S  S  D  M  E  F   : D  E  S  E  D  E  S  D  I  A  E  P  H  D  D  N  D  E  G  G  A  A  F  M  H  S  Y  S  D  T  L  N  D  E  L  K  G  T  T  L  S  N  T  F  V  R  A  N  G  E  S  E  S  I  K  K  D  E  :  G  T  S  T  A  A  E  N  M  E  E  E  D  F  S  P  V  D  V  D  F  N  L  V  K  N  F  L  D  S  F  S  S  Q  D  G  L  P  G  P  A  S  N  L  L  G  L  M  G  L  Q  L  P  P  D  A  S  K  G  K  *  P  Y  Y  T  Q  T  C  F  L  I  L  L  F  L  A  F  F  *  T  A  I  F  T  I  L  C  I  T  Y  V  L  T  S  N  G  E  K  R  R  R  W  I  Y  V  V  F  F  I  F  D  H  Q  I  I  Y  I  L  I  N  Y  V  K  N  I  I  S  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26917" stop="27179"/>
                    <exon start="28050" stop="28370"/>
                    <exon start="28796" stop="28929"/>
                    <exon start="29287" stop="29459"/>
                    <exon start="29650" stop="29832"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PALPPRSDVGAYMEAELGMKIACGFEMIYQLKKRQGMDGKGSTWDAFRLSLERSGYFEGLLPGSKEYKRLMKNAEEYYKNSSLHARESATLSAPVRRIDEILALPDSADDFKDQEIPPSDDDSWLYGGEDELNSVLQERQKEMELYNSKRKQKSKEQDGPSNHSDNFDLKDISNSMQAFVTKVASYEGAEVPEDRNVKEVDFDVDHFMKDLESFMRGQGNEDIGRDVDIEEGSSSDMEFDESEDESDIAEPHDDNDEGGAAFMHSYSDTLNDELKGTTLSNTFVRANGESESIKKDEGTSTAAENMEEEDFSPVDVDFNLVKNFLDSFSSQDGLPGPASNLLGLMGLQLPPDASKGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26875" e_stop="27179"/>
            <exon e_start="28050" e_stop="28370"/>
            <exon e_start="28806" e_stop="28929"/>
            <exon e_start="29287" e_stop="29377"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26875" e_stop="27179" e_length="305"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.974">
            <gDNA_intron_boundary i_start="27180" i_stop="28049" i_length="870"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28050" e_stop="28370" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="0.886" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28371" i_stop="28805" i_length="435"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28806" e_stop="28929" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28930" i_stop="29286" i_length="357"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29287" e_stop="29377" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26875" stop="27179"/>
              <exon start="28050" stop="28370"/>
              <exon start="28806" stop="28929"/>
              <exon start="29287" stop="29377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACAGTTGGTGCAGCAGACATTTCAGGCGCCGAAATGTTATCCGGCTTTGCCACCCAGGAGTGATGTGGGTGCTTATATGGAAGCTGAGCTGGGAATGAAGATTGCTTGTGGATTTGAGATGATTTATCAGTTGAAAAAGAGGCAGGGCATGGACGGAAAAGGGAGTACATGGGATGCGTTTAGGCTGAGTCTAGAGCGGAGTGGGTACTTCGAAGGGCTGTTACCAGGATCGAAGGAGTATAAAAGATTGATGAAGAATGCTGAGGAGTATTACAAGAATAGTTCACTGCATGCAAGAGAAAG : TGCTACACTAAGTGCTCCAGTGCGAAGAATAGATGAGATCCTTGCCCTTCCTGATTCTGCTGATGACTTTAAGGATCAGGAGATACCGCCATCTGATGATGATTCATGGCTTTATGGTGGAGAGGATGAGCTAAATTCCGTTCTTCAAGAGAGGCAAAAGGAGATGGAACTTTACAATTCAAAAAGGAAACAGAAATCAAAAGAGCAGGATGGGCCCAGCAATCATTCTGATAATTTTGATCTAAAAGATATATCGAACTCTATGCAAGCATTTGTCACAAAAGTGGCCAGTTATGAAGGTGCAGAGGTTCCAGAGGACAG : GAAGTGGACTTTGATGTCGATCACTTTATGAAAGACCTGGAATCGTTTATGAGGGGTCAGGGCAATGAAGACATTGGCCGTGATGTTGATATTGAAGAAGGGTCATCATCAGATATGGAGTTCG : ATGAATCTGAAGATGAGAGTGATATTGCCGAGCCACATGATGATAATGATGAGGGAGGTGCTGCTTTCATGCATTCGTATTCGGACACTCT</gDNA_template>
            <first_frame> A  Q  L  V  Q  Q  T  F  Q  A  P  K  C  Y  P  A  L  P  P  R  S  D  V  G  A  Y  M  E  A  E  L  G  M  K  I  A  C  G  F  E  M  I  Y  Q  L  K  K  R  Q  G  M  D  G  K  G  S  T  W  D  A  F  R  L  S  L  E  R  S  G  Y  F  E  G  L  L  P  G  S  K  E  Y  K  R  L  M  K  N  A  E  E  Y  Y  K  N  S  S  L  H  A  R  E  S :   A  T  L  S  A  P  V  R  R  I  D  E  I  L  A  L  P  D  S  A  D  D  F  K  D  Q  E  I  P  P  S  D  D  D  S  W  L  Y  G  G  E  D  E  L  N  S  V  L  Q  E  R  Q  K  E  M  E  L  Y  N  S  K  R  K  Q  K  S  K  E  Q  D  G  P  S  N  H  S  D  N  F  D  L  K  D  I  S  N  S  M  Q  A  F  V  T  K  V  A  S  Y  E  G  A  E  V  P  E  D  R :   K  W  T  L  M  S  I  T  L  *  K  T  W  N  R  L  *  G  V  R  A  M  K  T  L  A  V  M  L  I  L  K  K  G  H  H  Q  I  W  S  S  :  M  N  L  K  M  R  V  I  L  P  S  H  M  M  I  M  M  R  E  V  L  L  S  C  I  R  I  R  T  L  </first_frame>
            <second_frame>  H  S  W  C  S  R  H  F  R  R  R  N  V  I  R  L  C  H  P  G  V  M  W  V  L  I  W  K  L  S  W  E  *  R  L  L  V  D  L  R  *  F  I  S  *  K  R  G  R  A  W  T  E  K  G  V  H  G  M  R  L  G  *  V  *  S  G  V  G  T  S  K  G  C  Y  Q  D  R  R  S  I  K  D  *  *  R  M  L  R  S  I  T  R  I  V  H  C  M  Q  E  K   : V  L  H  *  V  L  Q  C  E  E  *  M  R  S  L  P  F  L  I  L  L  M  T  L  R  I  R  R  Y  R  H  L  M  M  I  H  G  F  M  V  E  R  M  S  *  I  P  F  F  K  R  G  K  R  R  W  N  F  T  I  Q  K  G  N  R  N  Q  K  S  R  M  G  P  A  I  I  L  I  I  L  I  *  K  I  Y  R  T  L  C  K  H  L  S  Q  K  W  P  V  M  K  V  Q  R  F  Q  R  T   : G  S  G  L  *  C  R  S  L  Y  E  R  P  G  I  V  Y  E  G  S  G  Q  *  R  H  W  P  *  C  *  Y  *  R  R  V  I  I  R  Y  G  V  R :   *  I  *  R  *  E  *  Y  C  R  A  T  *  *  *  *  *  G  R  C  C  F  H  A  F  V  F  G  H  S </second_frame>
            <third_frame>   T  V  G  A  A  D  I  S  G  A  E  M  L  S  G  F  A  T  Q  E  *  C  G  C  L  Y  G  S  *  A  G  N  E  D  C  L  W  I  *  D  D  L  S  V  E  K  E  A  G  H  G  R  K  R  E  Y  M  G  C  V  *  A  E  S  R  A  E  W  V  L  R  R  A  V  T  R  I  E  G  V  *  K  I  D  E  E  C  *  G  V  L  Q  E  *  F  T  A  C  K  R  K  :  C  Y  T  K  C  S  S  A  K  N  R  *  D  P  C  P  S  *  F  C  *  *  L  *  G  S  G  D  T  A  I  *  *  *  F  M  A  L  W  W  R  G  *  A  K  F  R  S  S  R  E  A  K  G  D  G  T  L  Q  F  K  K  E  T  E  I  K  R  A  G  W  A  Q  Q  S  F  *  *  F  *  S  K  R  Y  I  E  L  Y  A  S  I  C  H  K  S  G  Q  L  *  R  C  R  G  S  R  G  Q  :  E  V  D  F  D  V  D  H  F  M  K  D  L  E  S  F  M  R  G  Q  G  N  E  D  I  G  R  D  V  D  I  E  E  G  S  S  S  D  M  E  F   : D  E  S  E  D  E  S  D  I  A  E  P  H  D  D  N  D  E  G  G  A  A  F  M  H  S  Y  S  D  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26875" stop="27179"/>
                    <exon start="28050" stop="28370"/>
                    <exon start="28806" stop="28836"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQLVQQTFQAPKCYPALPPRSDVGAYMEAELGMKIACGFEMIYQLKKRQGMDGKGSTWDAFRLSLERSGYFEGLLPGSKEYKRLMKNAEEYYKNSSLHARESATLSAPVRRIDEILALPDSADDFKDQEIPPSDDDSWLYGGEDELNSVLQERQKEMELYNSKRKQKSKEQDGPSNHSDNFDLKDISNSMQAFVTKVASYEGAEVPEDRKWTLMSITL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="30626" PGL_stop="32869"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30666" e_stop="30823"/>
            <exon e_start="31717" e_stop="31900"/>
            <exon e_start="31981" e_stop="32114"/>
            <exon e_start="32203" e_stop="32388"/>
            <exon e_start="32525" e_stop="32869"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.852" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30666" e_stop="30823" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30824" i_stop="31716" i_length="893"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31717" e_stop="31900" e_length="184"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31901" i_stop="31980" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31981" e_stop="32114" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.852">
            <gDNA_intron_boundary i_start="32115" i_stop="32202" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32203" e_stop="32388" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32389" i_stop="32524" i_length="136"/>
          </intron>
          <exon e_serial="5" e_score="0.954">
            <gDNA_exon_boundary e_start="32525" e_stop="32869" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30666" stop="30823"/>
              <exon start="31717" stop="31900"/>
              <exon start="31981" stop="32114"/>
              <exon start="32203" stop="32388"/>
              <exon start="32525" stop="32569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30669" stop="30823"/>
              <exon start="31717" stop="31900"/>
              <exon start="31981" stop="32114"/>
              <exon start="32203" stop="32388"/>
              <exon start="32525" stop="32869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30669" stop="30823"/>
              <exon start="31717" stop="31900"/>
              <exon start="31981" stop="32109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30671" stop="30823"/>
              <exon start="31717" stop="31900"/>
              <exon start="31981" stop="32114"/>
              <exon start="32203" stop="32304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30671" stop="30823"/>
              <exon start="31717" stop="31900"/>
              <exon start="31981" stop="32089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30672" stop="30823"/>
              <exon start="31717" stop="31900"/>
              <exon start="31981" stop="32114"/>
              <exon start="32203" stop="32388"/>
              <exon start="32525" stop="32653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30672" stop="30823"/>
              <exon start="31717" stop="31900"/>
              <exon start="31981" stop="32114"/>
              <exon start="32203" stop="32388"/>
              <exon start="32525" stop="32554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30673" stop="30823"/>
              <exon start="31717" stop="31900"/>
              <exon start="31981" stop="32114"/>
              <exon start="32203" stop="32234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30675" stop="30823"/>
              <exon start="31717" stop="31900"/>
              <exon start="31981" stop="32114"/>
              <exon start="32203" stop="32388"/>
              <exon start="32525" stop="32689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30676" stop="30823"/>
              <exon start="31717" stop="31900"/>
              <exon start="31981" stop="32114"/>
              <exon start="32203" stop="32388"/>
              <exon start="32525" stop="32758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31773" stop="31900"/>
              <exon start="31981" stop="32114"/>
              <exon start="32203" stop="32242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483605" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGGGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG : GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTG : CACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTGAGAAAGATGGATCTAATGTCTTTGTAAATTGGGTGAAAGCTAATGAGATTAAAATT : ATATTGGTTGTAGGGATATGCACGGACATATGCGTGCTTGATTTTGTGTGTTCTGTCTTATCTGCACGAAACCGTGGATTTCTCTCCCCACTGAAAGACGTGATTGTATATTCCCCTGGCTGCGCTACCTATGATCTTCCAGTCCAGATTGCCAGAAATATAAAAGGAGCTTTACCTCATCCACAG : GAATTCATGCATCACATAGGCCTTTACATGGCCAAAGGAAGAGGAGCAAAAGTAGTTTCACATATCTCATTTGACACGACAACCAACGAGACATAACTTTGAACAATGAGATTAAGATCCATATTTCTCATTCGAAACTCTGAAGGACACTGCTACAGCTATTGCAGACACTGCTTAGTATATATTAAGTTATAGTAGTAAGATAAATATGCCCATATGCATCTTCTCTTGTTCAGTTGGCTGTGCAGCTAACTTCTCTTGTTCCAAAACTACTAATACTTCTACCATATTGTAATAAACTATCACGTTTTGGATGCCAAATAAATTTGTCTATAGACAACTTTG</gDNA_template>
            <first_frame> *  W  E  Q  W  G  K  R  L  R  L  T  Y  *  R  V  R  F  R  R  R  K  M  N  R  C  F  S  P  A  M  L  T  P  V  S  Y  S  S  T  S  L  M  A  S  A  P  S  E  L  A  I  W :   L  R  *  H  Q  I  D  K  F  Q  Q  W  L  M  S  Q  L  N  L  Q  K  C  S  V  R  R  N  G  L  F  M  H  F  V  I  R  I  I  L  M  C  L  S  H  L  I  L  L  I  V  S  L  E  Q  M  N  L  S  W  F  L  :  H  C  S  G  W  R  M  N  L  M  *  Q  C  D  A  R  I  V  L  M  V  S  L  A  R  L  R  K  M  D  L  M  S  L  *  I  G  *  K  L  M  R  L  K  L :   Y  W  L  *  G  Y  A  R  T  Y  A  C  L  I  L  C  V  L  S  Y  L  H  E  T  V  D  F  S  P  H  *  K  T  *  L  Y  I  P  L  A  A  L  P  M  I  F  Q  S  R  L  P  E  I  *  K  E  L  Y  L  I  H  R :   N  S  C  I  T  *  A  F  T  W  P  K  E  E  E  Q  K  *  F  H  I  S  H  L  T  R  Q  P  T  R  H  N  F  E  Q  *  D  *  D  P  Y  F  S  F  E  T  L  K  D  T  A  T  A  I  A  D  T  A  *  Y  I  L  S  Y  S  S  K  I  N  M  P  I  C  I  F  S  C  S  V  G  C  A  A  N  F  S  C  S  K  T  T  N  T  S  T  I  L  *  *  T  I  T  F  W  M  P  N  K  F  V  Y  R  Q  L   </first_frame>
            <second_frame>  D  G  N  S  G  A  R  G  C  D  *  L  T  E  E  *  D  S  G  G  G  R  *  T  A  A  S  H  R  R  C  *  H  R  S  R  T  R  R  H  R  *  W  L  L  H  R  R  S  W  Q  F   : G  S  G  D  T  K  *  T  N  F  S  N  G  *  *  V  S  *  T  C  K  S  V  L  *  E  E  M  A  Y  L  C  T  S  *  F  A  S  S  *  C  A  *  A  T  *  S  S  S  L  Y  R  W  N  R  *  I  *  V  G  S  C :   T  A  V  V  G  E  *  T  *  C  D  S  A  M  Q  G  L  Y  *  W  F  P  W  L  D  *  E  R  W  I  *  C  L  C  K  L  G  E  S  *  *  D  *  N   : Y  I  G  C  R  D  M  H  G  H  M  R  A  *  F  C  V  F  C  L  I  C  T  K  P  W  I  S  L  P  T  E  R  R  D  C  I  F  P  W  L  R  Y  L  *  S  S  S  P  D  C  Q  K  Y  K  R  S  F  T  S  S  T   : G  I  H  A  S  H  R  P  L  H  G  Q  R  K  R  S  K  S  S  F  T  Y  L  I  *  H  D  N  Q  R  D  I  T  L  N  N  E  I  K  I  H  I  S  H  S  K  L  *  R  T  L  L  Q  L  L  Q  T  L  L  S  I  Y  *  V  I  V  V  R  *  I  C  P  Y  A  S  S  L  V  Q  L  A  V  Q  L  T  S  L  V  P  K  L  L  I  L  L  P  Y  C  N  K  L  S  R  F  G  C  Q  I  N  L  S  I  D  N  F  </second_frame>
            <third_frame>   M  G  T  V  G  Q  E  A  A  I  D  L  L  K  S  E  I  P  A  E  E  D  E  P  L  L  L  T  G  D  V  N  T  G  L  V  L  V  D  I  V  N  G  F  C  T  V  G  A  G  N  L  :  A  P  V  T  P  N  R  Q  I  S  A  M  V  D  E  S  V  K  L  A  K  V  F  C  E  K  K  W  P  I  Y  A  L  R  D  S  H  H  P  D  V  P  E  P  P  N  P  P  H  C  I  A  G  T  D  E  S  E  L  V  P   : A  L  Q  W  L  E  N  E  P  N  V  T  V  R  C  K  D  C  I  D  G  F  L  G  S  I  E  K  D  G  S  N  V  F  V  N  W  V  K  A  N  E  I  K  I  :  I  L  V  V  G  I  C  T  D  I  C  V  L  D  F  V  C  S  V  L  S  A  R  N  R  G  F  L  S  P  L  K  D  V  I  V  Y  S  P  G  C  A  T  Y  D  L  P  V  Q  I  A  R  N  I  K  G  A  L  P  H  P  Q  :  E  F  M  H  H  I  G  L  Y  M  A  K  G  R  G  A  K  V  V  S  H  I  S  F  D  T  T  T  N  E  T  *  L  *  T  M  R  L  R  S  I  F  L  I  R  N  S  E  G  H  C  Y  S  Y  C  R  H  C  L  V  Y  I  K  L  *  *  *  D  K  Y  A  H  M  H  L  L  L  F  S  W  L  C  S  *  L  L  L  F  Q  N  Y  *  Y  F  Y  H  I  V  I  N  Y  H  V  L  D  A  K  *  I  C  L  *  T  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30668" stop="30823"/>
                    <exon start="31717" stop="31900"/>
                    <exon start="31981" stop="32114"/>
                    <exon start="32203" stop="32388"/>
                    <exon start="32525" stop="32620"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGTVGQEAAIDLLKSEIPAEEDEPLLLTGDVNTGLVLVDIVNGFCTVGAGNLAPVTPNRQISAMVDESVKLAKVFCEKKWPIYALRDSHHPDVPEPPNPPHCIAGTDESELVPALQWLENEPNVTVRCKDCIDGFLGSIEKDGSNVFVNWVKANEIKIILVVGICTDICVLDFVCSVLSARNRGFLSPLKDVIVYSPGCATYDLPVQIARNIKGALPHPQEFMHHIGLYMAKGRGAKVVSHISFDTTTNET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30626" e_stop="30823"/>
            <exon e_start="31717" e_stop="32058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.894"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.894">
            <gDNA_exon_boundary e_start="30626" e_stop="30823" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30824" i_stop="31716" i_length="893"/>
          </intron>
          <exon e_serial="2" e_score="0.939">
            <gDNA_exon_boundary e_start="31717" e_stop="32058" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30626" stop="30823"/>
              <exon start="31717" stop="32058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402682" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAGAAGGAGAAGACAGAAAATAATTTTAAAAAAATCAGTGATGGGAACAGTGGGGCAAGAGGCTGCGATTGACTTACTGAAGAGTGAGATTCCGGCGGAGGAAGATGAACCGCTGCTTCTCACCGGCGATGTTAACACCGGTCTCGTACTCGTCGACATCGTTAATGGCTTCTGCACCGTCGGAGCTGGCAATTTG : GCTCCGGTGACACCAAATAGACAAATTTCAGCAATGGTTGATGAGTCAGTTAAACTTGCAAAAGTGTTCTGTGAGAAGAAATGGCCTATTTATGCACTTCGTGATTCGCATCATCCTGATGTGCCTGAGCCACCTAATCCTCCTCATTGTATCGCTGGAACAGATGAATCTGAGTTGGTTCCTGGTTAGTATTTCCTTCATGTTTTTTCTCCTTTCAGGTTAAAAGTGAGTTTTGTGAATGTGGTCTTTTATCATCATTTGCAGCACTGCAGTGGTTGGAGAATGAACCTAATGTGACAGTGCGATGCAAGGATTGTATTGATGGTTTCCTTGGCTCGATTG</gDNA_template>
            <first_frame> E  R  R  R  R  Q  K  I  I  L  K  K  S  V  M  G  T  V  G  Q  E  A  A  I  D  L  L  K  S  E  I  P  A  E  E  D  E  P  L  L  L  T  G  D  V  N  T  G  L  V  L  V  D  I  V  N  G  F  C  T  V  G  A  G  N  L  :  A  P  V  T  P  N  R  Q  I  S  A  M  V  D  E  S  V  K  L  A  K  V  F  C  E  K  K  W  P  I  Y  A  L  R  D  S  H  H  P  D  V  P  E  P  P  N  P  P  H  C  I  A  G  T  D  E  S  E  L  V  P  G  *  Y  F  L  H  V  F  S  P  F  R  L  K  V  S  F  V  N  V  V  F  Y  H  H  L  Q  H  C  S  G  W  R  M  N  L  M  *  Q  C  D  A  R  I  V  L  M  V  S  L  A  R  L </first_frame>
            <second_frame>  R  E  G  E  D  R  K  *  F  *  K  N  Q  *  W  E  Q  W  G  K  R  L  R  L  T  Y  *  R  V  R  F  R  R  R  K  M  N  R  C  F  S  P  A  M  L  T  P  V  S  Y  S  S  T  S  L  M  A  S  A  P  S  E  L  A  I  W :   L  R  *  H  Q  I  D  K  F  Q  Q  W  L  M  S  Q  L  N  L  Q  K  C  S  V  R  R  N  G  L  F  M  H  F  V  I  R  I  I  L  M  C  L  S  H  L  I  L  L  I  V  S  L  E  Q  M  N  L  S  W  F  L  V  S  I  S  F  M  F  F  L  L  S  G  *  K  *  V  L  *  M  W  S  F  I  I  I  C  S  T  A  V  V  G  E  *  T  *  C  D  S  A  M  Q  G  L  Y  *  W  F  P  W  L  D   </second_frame>
            <third_frame>   E  K  E  K  T  E  N  N  F  K  K  I  S  D  G  N  S  G  A  R  G  C  D  *  L  T  E  E  *  D  S  G  G  G  R  *  T  A  A  S  H  R  R  C  *  H  R  S  R  T  R  R  H  R  *  W  L  L  H  R  R  S  W  Q  F   : G  S  G  D  T  K  *  T  N  F  S  N  G  *  *  V  S  *  T  C  K  S  V  L  *  E  E  M  A  Y  L  C  T  S  *  F  A  S  S  *  C  A  *  A  T  *  S  S  S  L  Y  R  W  N  R  *  I  *  V  G  S  W  L  V  F  P  S  C  F  F  S  F  Q  V  K  S  E  F  C  E  C  G  L  L  S  S  F  A  A  L  Q  W  L  E  N  E  P  N  V  T  V  R  C  K  D  C  I  D  G  F  L  G  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30626" stop="30823"/>
                    <exon start="31717" stop="31905"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERRRRQKIILKKSVMGTVGQEAAIDLLKSEIPAEEDEPLLLTGDVNTGLVLVDIVNGFCTVGAGNLAPVTPNRQISAMVDESVKLAKVFCEKKWPIYALRDSHHPDVPEPPNPPHCIAGTDESELVPG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="46256" PGL_stop="42632"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46256" e_stop="45089"/>
            <exon e_start="43647" e_stop="43163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.960" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="46256" e_stop="45089" e_length="1168"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.960">
            <gDNA_intron_boundary i_start="45088" i_stop="43648" i_length="1441"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43647" e_stop="43163" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46256" stop="45549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46248" stop="45089"/>
              <exon start="43647" stop="43163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46247" stop="45769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46223" stop="45532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46223" stop="45542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46203" stop="45643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46203" stop="45693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46199" stop="45752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46187" stop="45529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46054" stop="45364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45695" stop="45366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45443" stop="45089"/>
              <exon start="43647" stop="43167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45327" stop="45089"/>
              <exon start="43647" stop="43267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43628" stop="43211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43473" stop="43211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGTGTTACTTTTGGGGGGGTGGGGTGAAGACGAAAGAAGGGAGTTTTAGTGAGAGAGAGAAAAAGGGTTCACCGCCGGTGGCGGAAAATGGATATGCCGGTGAACAGTTTTGTTTTTTTCCGGTGATATTACCGTGCTGATCTCACTTTCCGGCGAGGATTTGAGAATTTTCCGGTGGTGACACCGTTTGATATATATACACACATCTGCCGAAAGCTTATCCTTTTTCTTTACTGAGAAACAAATTCGGGTCTGGGTTTGACCCGATTGGAGAAATGGTTTTTGGTGTTTTAATTCCAATTTTGCCCTCATCAATCACGAGTTTGAGATGAAAAACTTGATTTAAATTTTGTGGATTTATCATATTGTTAGACCCTTTTGAACTGTTTGATGTTTTCTGGGATTTTTAGTTGAATTTTAGTGCTAGGAGATGGTGGGGTTTTAATTTTTGAAGCTTTTCTTGAAAAGGGGTTGTTTTTTTATGATTAAACTGCTGAAAGCTGTTTGCTTTTTTGCTCTTTTGATAGAAAAAGTTTGTCTTTAGCCTTCCATCTGATATTTTGTTTTAGTAATGGATTAAGCATTTGTTGAATTTTTGTTCTGGGGCTTGGATTTGAGTTCTTGATTGTGTTTCAGAGCTTAAAGTTTGATTTTTTTTTGCTAAGTTTGATCATTTGTAGAATCCCTTTTGGATGAAATGGCAGTTTCTTTGACTCGTTTGTCATGGTGGTGGTGGGGTGGGAAAGAGAAGGAACCAGTGTCTAATGGATCTTCAATGAATCCCTTGCAAGATTTTGGATTTGGATTGAAGGAACAAAGTGATAGTTTGAAGTTTAAGTCAGTGAGGGGGGCTAATCTAGCTTCAACTACTAGGAAAGTGAAGAGGAAATGGAAGAGTAGAGAGGAGAGGAAGAGGGTTGATGAGAAATATGATGTGGTATTGGTGCCATCTGATGGTGTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCACATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCTTGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACAATCAGTTTTTAAGTGCCATTGAGAATCTCTCAAATGGGTATCCTGCTG : AGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTTATGAATCT</gDNA_template>
            <first_frame> C  V  L  L  L  G  G  W  G  E  D  E  R  R  E  F  *  *  E  R  E  K  G  F  T  A  G  G  G  K  W  I  C  R  *  T  V  L  F  F  S  G  D  I  T  V  L  I  S  L  S  G  E  D  L  R  I  F  R  W  *  H  R  L  I  Y  I  H  T  S  A  E  S  L  S  F  F  F  T  E  K  Q  I  R  V  W  V  *  P  D  W  R  N  G  F  W  C  F  N  S  N  F  A  L  I  N  H  E  F  E  M  K  N  L  I  *  I  L  W  I  Y  H  I  V  R  P  F  *  T  V  *  C  F  L  G  F  L  V  E  F  *  C  *  E  M  V  G  F  *  F  L  K  L  F  L  K  R  G  C  F  F  M  I  K  L  L  K  A  V  C  F  F  A  L  L  I  E  K  V  C  L  *  P  S  I  *  Y  F  V  L  V  M  D  *  A  F  V  E  F  L  F  W  G  L  D  L  S  S  *  L  C  F  R  A  *  S  L  I  F  F  C  *  V  *  S  F  V  E  S  L  L  D  E  M  A  V  S  L  T  R  L  S  W  W  W  W  G  G  K  E  K  E  P  V  S  N  G  S  S  M  N  P  L  Q  D  F  G  F  G  L  K  E  Q  S  D  S  L  K  F  K  S  V  R  G  A  N  L  A  S  T  T  R  K  V  K  R  K  W  K  S  R  E  E  R  K  R  V  D  E  K  Y  D  V  V  L  V  P  S  D  G  V  C  L  S  G  S  E  S  D  D  S  D  W  S  I  G  W  L  E  P  H  A  P  D  F  Q  N  D  D  E  G  D  D  S  F  A  V  L  V  P  C  Y  R  H  D  C  R  E  I  G  E  P  N  N  Q  F  L  S  A  I  E  N  L  S  N  G  Y  P  A   : E  G  K  K  Y  M  E  Q  W  L  S  S  L  Q  N  F  *  I  Y  C  S  W  S  L  S  T  H  *  E  F  S  E  A  G  S  I  F  *  Y  L  R  R  Y  A  S  S  A  S  I  S  K  S  S  G  S  R  S  A  F  S  F  A  R  D  K  *  S  S  F  S  W  Q  *  S  L  V  S  G  S  N  T  Q  I  N  V  I  F  K  L  *  N  *  S  T  S  V  V  V  G  K  T  *  H  I  K  L  I  F  *  C  K  Y  S  *  C  E  Y  G  R  S  S  M  L  F  N  C  C  Y  C  K  *  I  I  C  L  P  I  S  R  Q  V  K  T  S  L  F  I  S  L  I  I  H  *  C  *  I  L  C  S  Y  E  S </first_frame>
            <second_frame>  V  C  Y  F  W  G  G  G  V  K  T  K  E  G  S  F  S  E  R  E  K  K  G  S  P  P  V  A  E  N  G  Y  A  G  E  Q  F  C  F  F  P  V  I  L  P  C  *  S  H  F  P  A  R  I  *  E  F  S  G  G  D  T  V  *  Y  I  Y  T  H  L  P  K  A  Y  P  F  S  L  L  R  N  K  F  G  S  G  F  D  P  I  G  E  M  V  F  G  V  L  I  P  I  L  P  S  S  I  T  S  L  R  *  K  T  *  F  K  F  C  G  F  I  I  L  L  D  P  F  E  L  F  D  V  F  W  D  F  *  L  N  F  S  A  R  R  W  W  G  F  N  F  *  S  F  S  *  K  G  V  V  F  L  *  L  N  C  *  K  L  F  A  F  L  L  F  *  *  K  K  F  V  F  S  L  P  S  D  I  L  F  *  *  W  I  K  H  L  L  N  F  C  S  G  A  W  I  *  V  L  D  C  V  S  E  L  K  V  *  F  F  F  A  K  F  D  H  L  *  N  P  F  W  M  K  W  Q  F  L  *  L  V  C  H  G  G  G  G  V  G  K  R  R  N  Q  C  L  M  D  L  Q  *  I  P  C  K  I  L  D  L  D  *  R  N  K  V  I  V  *  S  L  S  Q  *  G  G  L  I  *  L  Q  L  L  G  K  *  R  G  N  G  R  V  E  R  R  G  R  G  L  M  R  N  M  M  W  Y  W  C  H  L  M  V  F  V  Y  Q  V  P  N  P  M  T  L  T  G  R  S  G  G  W  N  H  M  P  L  I  S  R  M  M  M  R  E  M  T  V  L  L  C  W  F  L  A  T  G  M  I  V  E  R  *  E  S  Q  T  I  S  F  *  V  P  L  R  I  S  Q  M  G  I  L  L  :  R  V  R  S  I  W  S  N  G  S  L  L  F  R  I  F  E  Y  T  A  A  G  R  Y  L  R  I  R  N  F  L  K  Q  G  L  S  F  S  I  *  G  D  M  L  V  L  H  Q  Y  R  K  V  V  A  A  G  Q  H  F  H  L  R  E  T  N  N  Q  V  F  R  G  S  D  L  W  F  R  A  Q  I  H  K  S  M  S  S  L  N  F  R  T  D  Q  L  L  L  L  W  G  K  L  D  I  S  S  *  F  F  S  V  N  I  A  N  V  N  M  G  E  V  V  C  F  L  T  A  A  I  V  N  K  S  S  V  F  Q  Y  P  D  K  *  K  H  H  C  L  Y  L  *  S  Y  I  N  V  K  Y  Y  V  L  M  N   </second_frame>
            <third_frame>   C  V  T  F  G  G  V  G  *  R  R  K  K  G  V  L  V  R  E  R  K  R  V  H  R  R  W  R  K  M  D  M  P  V  N  S  F  V  F  F  R  *  Y  Y  R  A  D  L  T  F  R  R  G  F  E  N  F  P  V  V  T  P  F  D  I  Y  T  H  I  C  R  K  L  I  L  F  L  Y  *  E  T  N  S  G  L  G  L  T  R  L  E  K  W  F  L  V  F  *  F  Q  F  C  P  H  Q  S  R  V  *  D  E  K  L  D  L  N  F  V  D  L  S  Y  C  *  T  L  L  N  C  L  M  F  S  G  I  F  S  *  I  L  V  L  G  D  G  G  V  L  I  F  E  A  F  L  E  K  G  L  F  F  Y  D  *  T  A  E  S  C  L  L  F  C  S  F  D  R  K  S  L  S  L  A  F  H  L  I  F  C  F  S  N  G  L  S  I  C  *  I  F  V  L  G  L  G  F  E  F  L  I  V  F  Q  S  L  K  F  D  F  F  L  L  S  L  I  I  C  R  I  P  F  G  *  N  G  S  F  F  D  S  F  V  M  V  V  V  G  W  E  R  E  G  T  S  V  *  W  I  F  N  E  S  L  A  R  F  W  I  W  I  E  G  T  K  *  *  F  E  V  *  V  S  E  G  G  *  S  S  F  N  Y  *  E  S  E  E  E  M  E  E  *  R  G  E  E  E  G  *  *  E  I  *  C  G  I  G  A  I  *  W  C  L  F  I  R  F  R  I  R  *  L  *  L  V  D  R  V  A  G  T  T  C  P  *  F  P  E  *  *  *  G  R  *  Q  F  C  C  V  G  S  L  L  Q  A  *  L  *  R  D  R  R  A  K  Q  S  V  F  K  C  H  *  E  S  L  K  W  V  S  C  * :   G  *  E  V  Y  G  A  M  A  L  F  S  S  E  F  L  N  I  L  Q  L  V  V  I  Y  A  L  G  I  F  *  S  R  V  Y  L  L  V  F  E  E  I  C  *  F  C  I  N  I  E  K  *  W  Q  Q  V  S  I  F  I  C  E  R  Q  I  I  K  F  F  V  A  V  I  F  G  F  G  L  K  Y  T  N  Q  C  H  L  *  T  L  E  L  I  N  F  C  C  C  G  E  N  L  T  Y  Q  A  D  F  L  V  *  I  *  L  M  *  I  W  E  K  *  Y  A  F  *  L  L  L  L  *  I  N  H  L  S  S  N  I  Q  T  S  E  N  I  I  V  Y  I  F  D  H  T  L  M  L  N  I  M  F  L  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45584" stop="45089"/>
                    <exon start="43647" stop="43598"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFVESLLDEMAVSLTRLSWWWWGGKEKEPVSNGSSMNPLQDFGFGLKEQSDSLKFKSVRGANLASTTRKVKRKWKSREERKRVDEKYDVVLVPSDGVCLSGSESDDSDWSIGWLEPHAPDFQNDDEGDDSFAVLVPCYRHDCREIGEPNNQFLSAIENLSNGYPAEGKKYMEQWLSSLQNF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43527" stop="43330"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDMLVLHQYRKVVAAGQHFHLRETNNQVFRGSDLWFRAQIHKSMSSLNFRTDQLLLLWGKLDISS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45327" e_stop="45089"/>
            <exon e_start="43647" e_stop="43171"/>
            <exon e_start="42652" e_stop="42632"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.960" e_score="0.987"/>
          <exon-intron don_prob="0.000" acc_prob="0.538" e_score="0.986"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="45327" e_stop="45089" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.960">
            <gDNA_intron_boundary i_start="45088" i_stop="43648" i_length="1441"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="43647" e_stop="43171" e_length="477"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.538">
            <gDNA_intron_boundary i_start="43170" i_stop="42653" i_length="518"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="42652" e_stop="42632" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45327" stop="45089"/>
              <exon start="43647" stop="43267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43628" stop="43211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43473" stop="43211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43407" stop="43171"/>
              <exon start="42652" stop="42632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238752" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATGATGTGGTATTGGTGCCATCTGATGGTGTTTGTTTATCAGGTTCCGAATCCGATGACTCTGACTGGTCGATCGGGTGGCTGGAACCACATGCCCCTGATTTCCAGAATGATGATGAGGGAGATGACAGTTTTGCTGTGTTGGTTCCTTGCTACAGGCATGATTGTAGAGAGATAGGAGAGCCAAACAATCAGTTTTTAAGTGCCATTGAGAATCTCTCAAATGGGTATCCTGCTG : AGGGTAAGAAGTATATGGAGCAATGGCTCTCTTCTCTTCAGAATTTTTGAATATACTGCAGCTGGTCGTTATCTACGCATTAGGAATTTTCTGAAGCAGGGTCTATCTTTTAGTATTTGAGGAGATATGCTAGTTCTGCATCAATATCGAAAAGTAGTGGCAGCAGGTCAGCATTTTCATTTGCGAGAGACAAATAATCAAGTTTTTCGTGGCAGTGATCTTTGGTTTCGGGCTCAAATACACAAATCAATGTCATCTTTAAACTTTAGAACTGATCAACTTCTGTTGTTGTGGGGAAAACTTGACATATCAAGCTGATTTTTTAGTGTAAATATAGCTAATGTGAATATGGGAGAAGTAGTATGCTTTTTAACTGCTGCTATTGTAAATAAATCATCTGTCTTCCAATATCCAGACAAGTGAAAACATCATTGTTTATATCTTTGATCATACATTAATGTTAAATATTATGTTCTT : GTTGAAAAGTGAAAAAAAAAA</gDNA_template>
            <first_frame> I  *  C  G  I  G  A  I  *  W  C  L  F  I  R  F  R  I  R  *  L  *  L  V  D  R  V  A  G  T  T  C  P  *  F  P  E  *  *  *  G  R  *  Q  F  C  C  V  G  S  L  L  Q  A  *  L  *  R  D  R  R  A  K  Q  S  V  F  K  C  H  *  E  S  L  K  W  V  S  C  * :   G  *  E  V  Y  G  A  M  A  L  F  S  S  E  F  L  N  I  L  Q  L  V  V  I  Y  A  L  G  I  F  *  S  R  V  Y  L  L  V  F  E  E  I  C  *  F  C  I  N  I  E  K  *  W  Q  Q  V  S  I  F  I  C  E  R  Q  I  I  K  F  F  V  A  V  I  F  G  F  G  L  K  Y  T  N  Q  C  H  L  *  T  L  E  L  I  N  F  C  C  C  G  E  N  L  T  Y  Q  A  D  F  L  V  *  I  *  L  M  *  I  W  E  K  *  Y  A  F  *  L  L  L  L  *  I  N  H  L  S  S  N  I  Q  T  S  E  N  I  I  V  Y  I  F  D  H  T  L  M  L  N  I  M  F  L :   L  K  S  E  K  K   </first_frame>
            <second_frame>  Y  D  V  V  L  V  P  S  D  G  V  C  L  S  G  S  E  S  D  D  S  D  W  S  I  G  W  L  E  P  H  A  P  D  F  Q  N  D  D  E  G  D  D  S  F  A  V  L  V  P  C  Y  R  H  D  C  R  E  I  G  E  P  N  N  Q  F  L  S  A  I  E  N  L  S  N  G  Y  P  A   : E  G  K  K  Y  M  E  Q  W  L  S  S  L  Q  N  F  *  I  Y  C  S  W  S  L  S  T  H  *  E  F  S  E  A  G  S  I  F  *  Y  L  R  R  Y  A  S  S  A  S  I  S  K  S  S  G  S  R  S  A  F  S  F  A  R  D  K  *  S  S  F  S  W  Q  *  S  L  V  S  G  S  N  T  Q  I  N  V  I  F  K  L  *  N  *  S  T  S  V  V  V  G  K  T  *  H  I  K  L  I  F  *  C  K  Y  S  *  C  E  Y  G  R  S  S  M  L  F  N  C  C  Y  C  K  *  I  I  C  L  P  I  S  R  Q  V  K  T  S  L  F  I  S  L  I  I  H  *  C  *  I  L  C  S   : C  *  K  V  K  K  K  </second_frame>
            <third_frame>   M  M  W  Y  W  C  H  L  M  V  F  V  Y  Q  V  P  N  P  M  T  L  T  G  R  S  G  G  W  N  H  M  P  L  I  S  R  M  M  M  R  E  M  T  V  L  L  C  W  F  L  A  T  G  M  I  V  E  R  *  E  S  Q  T  I  S  F  *  V  P  L  R  I  S  Q  M  G  I  L  L  :  R  V  R  S  I  W  S  N  G  S  L  L  F  R  I  F  E  Y  T  A  A  G  R  Y  L  R  I  R  N  F  L  K  Q  G  L  S  F  S  I  *  G  D  M  L  V  L  H  Q  Y  R  K  V  V  A  A  G  Q  H  F  H  L  R  E  T  N  N  Q  V  F  R  G  S  D  L  W  F  R  A  Q  I  H  K  S  M  S  S  L  N  F  R  T  D  Q  L  L  L  L  W  G  K  L  D  I  S  S  *  F  F  S  V  N  I  A  N  V  N  M  G  E  V  V  C  F  L  T  A  A  I  V  N  K  S  S  V  F  Q  Y  P  D  K  *  K  H  H  C  L  Y  L  *  S  Y  I  N  V  K  Y  Y  V  L  :  V  E  K  *  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45326" stop="45089"/>
                    <exon start="43647" stop="43598"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDVVLVPSDGVCLSGSESDDSDWSIGWLEPHAPDFQNDDEGDDSFAVLVPCYRHDCREIGEPNNQFLSAIENLSNGYPAEGKKYMEQWLSSLQNF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43527" stop="43330"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDMLVLHQYRKVVAAGQHFHLRETNNQVFRGSDLWFRAQIHKSMSSLNFRTDQLLLLWGKLDISS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="43174" PGL_stop="43980"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43174" e_stop="43346"/>
            <exon e_start="43397" e_stop="43980"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.960"/>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="43174" e_stop="43346" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43347" i_stop="43396" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.901">
            <gDNA_exon_boundary e_start="43397" e_stop="43980" e_length="584"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43174" stop="43346"/>
              <exon start="43397" stop="43980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434548" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACATAATATTTAACATTAATGTATGATCAAAGATATAAACAATGATGTTTTCACTTGTCTGGATATTGGAAGACAGATGATTTATTTACAATAGCAGCAGTTAAAAAGCATACTACTTCTCCCATATTCACATTAGCTATATTTACACTAAAAAATCAGCTTGATATGTCAA : ATTGATTTGTGTATTTGAGCCCGAAACCAAAGATCACTGCCACGAAAAACTTGATTATTTGTCTCTCGCAAATGAAAATGCTGACCTGCTGCCACTACTTTTCGATATTGATGCAGAACTAGCATATCTCCTCAAATACTAAAAGATAGACCCTGCTTCAGAAAATTCCTAATGCGTAGATAACGACCAGCTGCAGTATATTCAAAAATTCTGAAGAGAAGAGAGCCATTGCTCCATATACTTCTTACCCTCTGCAAGTATGAAAGAAGAATTTCAGACAAGATCACATTCACTCGTACGTCTAATACGAGACAACACAGACTGGCATAGATATGATACATATTAACCAACCTATCTAGACGAACTCATAACAAATTCTGCAGGCTTTAAATTGGTTCAAGGCAAATACAAGTCGTAAGTTTGGAAACTTCATACAGGAAGAAACAATAGCATTCAAAATAAAAGGAAAAGTCAGTTCTTTGTTCATTGCTCTATCAATGTTTAAGCTTTCTTTAAGAACCAAAAGGCTGGATTGAAAGGATATAACATCACCAAGATGGAGTATGTAGAACTCACTGCATTAG</gDNA_template>
            <first_frame> N  I  I  F  N  I  N  V  *  S  K  I  *  T  M  M  F  S  L  V  W  I  L  E  D  R  *  F  I  Y  N  S  S  S  *  K  A  Y  Y  F  S  H  I  H  I  S  Y  I  Y  T  K  K  S  A  *  Y  V  K :   L  I  C  V  F  E  P  E  T  K  D  H  C  H  E  K  L  D  Y  L  S  L  A  N  E  N  A  D  L  L  P  L  L  F  D  I  D  A  E  L  A  Y  L  L  K  Y  *  K  I  D  P  A  S  E  N  S  *  C  V  D  N  D  Q  L  Q  Y  I  Q  K  F  *  R  E  E  S  H  C  S  I  Y  F  L  P  S  A  S  M  K  E  E  F  Q  T  R  S  H  S  L  V  R  L  I  R  D  N  T  D  W  H  R  Y  D  T  Y  *  P  T  Y  L  D  E  L  I  T  N  S  A  G  F  K  L  V  Q  G  K  Y  K  S  *  V  W  K  L  H  T  G  R  N  N  S  I  Q  N  K  R  K  S  Q  F  F  V  H  C  S  I  N  V  *  A  F  F  K  N  Q  K  A  G  L  K  G  Y  N  I  T  K  M  E  Y  V  E  L  T  A  L  </first_frame>
            <second_frame>  T  *  Y  L  T  L  M  Y  D  Q  R  Y  K  Q  *  C  F  H  L  S  G  Y  W  K  T  D  D  L  F  T  I  A  A  V  K  K  H  T  T  S  P  I  F  T  L  A  I  F  T  L  K  N  Q  L  D  M  S   : N  *  F  V  Y  L  S  P  K  P  K  I  T  A  T  K  N  L  I  I  C  L  S  Q  M  K  M  L  T  C  C  H  Y  F  S  I  L  M  Q  N  *  H  I  S  S  N  T  K  R  *  T  L  L  Q  K  I  P  N  A  *  I  T  T  S  C  S  I  F  K  N  S  E  E  K  R  A  I  A  P  Y  T  S  Y  P  L  Q  V  *  K  K  N  F  R  Q  D  H  I  H  S  Y  V  *  Y  E  T  T  Q  T  G  I  D  M  I  H  I  N  Q  P  I  *  T  N  S  *  Q  I  L  Q  A  L  N  W  F  K  A  N  T  S  R  K  F  G  N  F  I  Q  E  E  T  I  A  F  K  I  K  G  K  V  S  S  L  F  I  A  L  S  M  F  K  L  S  L  R  T  K  R  L  D  *  K  D  I  T  S  P  R  W  S  M  *  N  S  L  H  * </second_frame>
            <third_frame>   H  N  I  *  H  *  C  M  I  K  D  I  N  N  D  V  F  T  C  L  D  I  G  R  Q  M  I  Y  L  Q  *  Q  Q  L  K  S  I  L  L  L  P  Y  S  H  *  L  Y  L  H  *  K  I  S  L  I  C  Q  :  I  D  L  C  I  *  A  R  N  Q  R  S  L  P  R  K  T  *  L  F  V  S  R  K  *  K  C  *  P  A  A  T  T  F  R  Y  *  C  R  T  S  I  S  P  Q  I  L  K  D  R  P  C  F  R  K  F  L  M  R  R  *  R  P  A  A  V  Y  S  K  I  L  K  R  R  E  P  L  L  H  I  L  L  T  L  C  K  Y  E  R  R  I  S  D  K  I  T  F  T  R  T  S  N  T  R  Q  H  R  L  A  *  I  *  Y  I  L  T  N  L  S  R  R  T  H  N  K  F  C  R  L  *  I  G  S  R  Q  I  Q  V  V  S  L  E  T  S  Y  R  K  K  Q  *  H  S  K  *  K  E  K  S  V  L  C  S  L  L  Y  Q  C  L  S  F  L  *  E  P  K  G  W  I  E  R  I  *  H  H  Q  D  G  V  C  R  T  H  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0107K14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="60013" PGL_stop="62153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60013" e_stop="60107"/>
            <exon e_start="60415" e_stop="60646"/>
            <exon e_start="61027" e_stop="61086"/>
            <exon e_start="61464" e_stop="61618"/>
            <exon e_start="62068" e_stop="62153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.988"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.966" acc_prob="0.993" e_score="0.994"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="60013" e_stop="60107" e_length="95"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60108" i_stop="60414" i_length="307"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60415" e_stop="60646" e_length="232"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="60647" i_stop="61026" i_length="380"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="61027" e_stop="61086" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.941" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61087" i_stop="61463" i_length="377"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="61464" e_stop="61618" e_length="155"/>
          </exon>
          <intron i_serial="4" don_prob="0.966" acc_prob="0.993">
            <gDNA_intron_boundary i_start="61619" i_stop="62067" i_length="449"/>
          </intron>
          <exon e_serial="5" e_score="0.930">
            <gDNA_exon_boundary e_start="62068" e_stop="62153" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60013" stop="60107"/>
              <exon start="60415" stop="60646"/>
              <exon start="61027" stop="61086"/>
              <exon start="61464" stop="61618"/>
              <exon start="62068" stop="62153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60013" stop="60107"/>
              <exon start="60415" stop="60646"/>
              <exon start="61027" stop="61086"/>
              <exon start="61464" stop="61618"/>
              <exon start="62068" stop="62099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60028" stop="60107"/>
              <exon start="60415" stop="60646"/>
              <exon start="61027" stop="61086"/>
              <exon start="61464" stop="61618"/>
              <exon start="62068" stop="62102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283306" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCTCCATAATTTTTTTACCTTGTTCGTGCAAACCATCACACATACGATGTCGTTTTGAAGGTTTCTTCCTTTCTCTGTATTCCGTTAGACAAG : GTTTTTTTCAAGAGAAGTAGAGGTTGAGGGGGGAATCATCACTATCCTTGTTTTTGTAATTAGGAAGACTTTTGATCAATGTGGAGTAGTTTAATTATCTTATGCTGCTAGTGATAGTTGGTTGTTTGCTTAGCTTTGTCCAATAATGGTTGCTGCTGGTTCTTTGCAGTTGTCCCATTATTGGGGGACTTGCAAGAACCATGAGCGCCTTAAGAAATATTCGCCTATACAG : AACACACTTGGAAGGAACAGGTGGCGTTCTTGTTGCACGAATCTGTCATCTTTTTCATCA : CGGCAGGACTCTTGGAGCATCCATCACTCAAGAGGATTGCAAGTGAAGAAACATGTGCTCCCATATAGAAGCAATTTGTTGAAGTGTAATTCTTTCCTAAAACCTGACCAAGCTTTTGACATTTCTGTAAAGAATGCTGCTATTATACTGAAAAG : ATCATACAATAGCTTACAAGGAAGCCCACATCTGCTTAAGTTGCTTCCCGGAATTGGAATCCTTACTTTTGCAGTTTGGGGTCTTG</gDNA_template>
            <first_frame> H  L  H  N  F  F  T  L  F  V  Q  T  I  T  H  T  M  S  F  *  R  F  L  P  F  S  V  F  R  *  T  R :   F  F  S  R  E  V  E  V  E  G  G  I  I  T  I  L  V  F  V  I  R  K  T  F  D  Q  C  G  V  V  *  L  S  Y  A  A  S  D  S  W  L  F  A  *  L  C  P  I  M  V  A  A  G  S  L  Q  L  S  H  Y  W  G  T  C  K  N  H  E  R  L  K  K  Y  S  P  I  Q  :  N  T  L  G  R  N  R  W  R  S  C  C  T  N  L  S  S  F  S  S  :  R  Q  D  S  W  S  I  H  H  S  R  G  L  Q  V  K  K  H  V  L  P  Y  R  S  N  L  L  K  C  N  S  F  L  K  P  D  Q  A  F  D  I  S  V  K  N  A  A  I  I  L  K  R :   S  Y  N  S  L  Q  G  S  P  H  L  L  K  L  L  P  G  I  G  I  L  T  F  A  V  W  G  L  </first_frame>
            <second_frame>  T  S  I  I  F  L  P  C  S  C  K  P  S  H  I  R  C  R  F  E  G  F  F  L  S  L  Y  S  V  R  Q   : G  F  F  Q  E  K  *  R  L  R  G  E  S  S  L  S  L  F  L  *  L  G  R  L  L  I  N  V  E  *  F  N  Y  L  M  L  L  V  I  V  G  C  L  L  S  F  V  Q  *  W  L  L  L  V  L  C  S  C  P  I  I  G  G  L  A  R  T  M  S  A  L  R  N  I  R  L  Y  R :   T  H  L  E  G  T  G  G  V  L  V  A  R  I  C  H  L  F  H  H :   G  R  T  L  G  A  S  I  T  Q  E  D  C  K  *  R  N  M  C  S  H  I  E  A  I  C  *  S  V  I  L  S  *  N  L  T  K  L  L  T  F  L  *  R  M  L  L  L  Y  *  K   : D  H  T  I  A  Y  K  E  A  H  I  C  L  S  C  F  P  E  L  E  S  L  L  L  Q  F  G  V  L </second_frame>
            <third_frame>   P  P  *  F  F  Y  L  V  R  A  N  H  H  T  Y  D  V  V  L  K  V  S  S  F  L  C  I  P  L  D  K  :  V  F  F  K  R  S  R  G  *  G  G  N  H  H  Y  P  C  F  C  N  *  E  D  F  *  S  M  W  S  S  L  I  I  L  C  C  *  *  *  L  V  V  C  L  A  L  S  N  N  G  C  C  W  F  F  A  V  V  P  L  L  G  D  L  Q  E  P  *  A  P  *  E  I  F  A  Y  T   : E  H  T  W  K  E  Q  V  A  F  L  L  H  E  S  V  I  F  F  I   : T  A  G  L  L  E  H  P  S  L  K  R  I  A  S  E  E  T  C  A  P  I  *  K  Q  F  V  E  V  *  F  F  P  K  T  *  P  S  F  *  H  F  C  K  E  C  C  Y  Y  T  E  K  :  I  I  Q  *  L  T  R  K  P  T  S  A  *  V  A  S  R  N  W  N  P  Y  F  C  S  L  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60548" stop="60646"/>
                    <exon start="61027" stop="61086"/>
                    <exon start="61464" stop="61618"/>
                    <exon start="62068" stop="62152"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCPIMVAAGSLQLSHYWGTCKNHERLKKYSPIQNTLGRNRWRSCCTNLSSFSSRQDSWSIHHSRGLQVKKHVLPYRSNLLKCNSFLKPDQAFDISVKNAAIILKRSYNSLQGSPHLLKLLPGIGILTFAVWGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="64703" PGL_stop="67763"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64703" e_stop="64723"/>
            <exon e_start="64812" e_stop="64925"/>
            <exon e_start="65824" e_stop="65880"/>
            <exon e_start="66645" e_stop="67763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.217" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.686" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.627" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64703" e_stop="64723" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.217" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64724" i_stop="64811" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64812" e_stop="64925" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.686" acc_prob="0.936">
            <gDNA_intron_boundary i_start="64926" i_stop="65823" i_length="898"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65824" e_stop="65880" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.627" acc_prob="0.974">
            <gDNA_intron_boundary i_start="65881" i_stop="66644" i_length="764"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="66645" e_stop="67763" e_length="1119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64703" stop="64723"/>
              <exon start="64812" stop="64925"/>
              <exon start="65824" stop="65880"/>
              <exon start="66645" stop="66829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64871" stop="64925"/>
              <exon start="65824" stop="65880"/>
              <exon start="66645" stop="67180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66645" stop="67519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66645" stop="67499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66645" stop="67473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66725" stop="67417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66726" stop="67156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66865" stop="67763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66946" stop="67587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67046" stop="67722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67215" stop="67721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733111" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGATGTCAGTAAGATAAAT : AATATTGTAGCTGACATGCGCAAAGTTTTGGCAAAGAATCCCCAAGTTGAGCAACAGAGGTTACATAGAAGAGTGTTCCTGGAGAATGTCAACCCTGAAAATCAAGCTCTGTTG : ATCTTAATATCCTGCTTTGTCAAGACATCACACTTCGAGGAATACTTGTGTGTCAAG : GAAGCAATTTTGTTAGATCTTCTCAGAGTCATTCGACATCACCGAGCTCGGCTTGCTACTCCCATCCGTACAGTTCAGAAAATATATAGTGATGCTGACTTGGACAACATGACATATGATTCTGCCTTCAGTCGTGGAGCAGCATCAACTCGTCCGTTGCTACTGATTGAGCCATCTTATAAAGTCAATGGGGAAGATCGCACAAAAGGTCGACCAATTCGCGTGAATGGTGAAGAAGATACCAAGGAAAAGGCTACCATGAAACCGGCACCTGACAGCAAGGTTGAAACCAAGAGCAGACCTGCATCTGATCCTAAAATCAAAGAAACACTTCCAGCTAACTCTAATGGTAAGGATGTGCCACTTTCTGACTTGAAACTTGATCCCAAAGTTGACAAAATGGCACATGCTGAATCCAAAGATGACATTAAAGCATCGTCTGATCCAAAATCGAGTAAAGCAACAGTGAAAAACACTTCACAACCGGTCCCAAAAGCTGAGCTTAAGTCTGCAGAAGTTGGTACTTCTGATTCCAAAGATCCTCCAGAGAACATCTCTAGCAACAAGCAAGTTGAGAAGGTAAGCCAGGGGATTGGTCGCACGACAAATGTAGTTGATAATTCCGCAACTTCTCCATCAGATGTTAGAGAGAAAACAGGAAATGTCCCATCTACTTCACTACCTAAGAGAGAAGATGAAAAACAACAAGTCTCACAACCATCTGTGCCATCGAAACCTGCATTGGAAGAGAACATTGTTCTTGGTGTTGCTCTCGAGGGTTCAAAAAGAACCCTTCCAATTGAAGAAGAGCTGTCTCCCCCACCAAATCCAGCAGAATCGAAGGAAATGGCTACTAGCCGTAGTAGTAGTAATGCTTCTACCATTGCAGAGAAAGATAAACAAGACGGGCAGCGTTCAAACAGACCTAATTCTACAGCTCCCGATCAGTCGAGTAAAGACAATTGATCCACCTATGTTTTCACTAACAGTTCATGTGACACTAATTCATTGTCAACACCAGATTTGATGTTACATGGTCCATTGAAAAGAGTTGTCTTGATTTCCAGGATAGTGAAGTATTTAGCCTATCACTCTAGTATAAAATTGGTCAACTTATAG</gDNA_template>
            <first_frame> L  D  V  S  K  I  N  :  N  I  V  A  D  M  R  K  V  L  A  K  N  P  Q  V  E  Q  Q  R  L  H  R  R  V  F  L  E  N  V  N  P  E  N  Q  A  L  L  :  I  L  I  S  C  F  V  K  T  S  H  F  E  E  Y  L  C  V  K  :  E  A  I  L  L  D  L  L  R  V  I  R  H  H  R  A  R  L  A  T  P  I  R  T  V  Q  K  I  Y  S  D  A  D  L  D  N  M  T  Y  D  S  A  F  S  R  G  A  A  S  T  R  P  L  L  L  I  E  P  S  Y  K  V  N  G  E  D  R  T  K  G  R  P  I  R  V  N  G  E  E  D  T  K  E  K  A  T  M  K  P  A  P  D  S  K  V  E  T  K  S  R  P  A  S  D  P  K  I  K  E  T  L  P  A  N  S  N  G  K  D  V  P  L  S  D  L  K  L  D  P  K  V  D  K  M  A  H  A  E  S  K  D  D  I  K  A  S  S  D  P  K  S  S  K  A  T  V  K  N  T  S  Q  P  V  P  K  A  E  L  K  S  A  E  V  G  T  S  D  S  K  D  P  P  E  N  I  S  S  N  K  Q  V  E  K  V  S  Q  G  I  G  R  T  T  N  V  V  D  N  S  A  T  S  P  S  D  V  R  E  K  T  G  N  V  P  S  T  S  L  P  K  R  E  D  E  K  Q  Q  V  S  Q  P  S  V  P  S  K  P  A  L  E  E  N  I  V  L  G  V  A  L  E  G  S  K  R  T  L  P  I  E  E  E  L  S  P  P  P  N  P  A  E  S  K  E  M  A  T  S  R  S  S  S  N  A  S  T  I  A  E  K  D  K  Q  D  G  Q  R  S  N  R  P  N  S  T  A  P  D  Q  S  S  K  D  N  *  S  T  Y  V  F  T  N  S  S  C  D  T  N  S  L  S  T  P  D  L  M  L  H  G  P  L  K  R  V  V  L  I  S  R  I  V  K  Y  L  A  Y  H  S  S  I  K  L  V  N  L  * </first_frame>
            <second_frame>  W  M  S  V  R  *  I :   I  L  *  L  T  C  A  K  F  W  Q  R  I  P  K  L  S  N  R  G  Y  I  E  E  C  S  W  R  M  S  T  L  K  I  K  L  C  * :   S  *  Y  P  A  L  S  R  H  H  T  S  R  N  T  C  V  S  R :   K  Q  F  C  *  I  F  S  E  S  F  D  I  T  E  L  G  L  L  L  P  S  V  Q  F  R  K  Y  I  V  M  L  T  W  T  T  *  H  M  I  L  P  S  V  V  E  Q  H  Q  L  V  R  C  Y  *  L  S  H  L  I  K  S  M  G  K  I  A  Q  K  V  D  Q  F  A  *  M  V  K  K  I  P  R  K  R  L  P  *  N  R  H  L  T  A  R  L  K  P  R  A  D  L  H  L  I  L  K  S  K  K  H  F  Q  L  T  L  M  V  R  M  C  H  F  L  T  *  N  L  I  P  K  L  T  K  W  H  M  L  N  P  K  M  T  L  K  H  R  L  I  Q  N  R  V  K  Q  Q  *  K  T  L  H  N  R  S  Q  K  L  S  L  S  L  Q  K  L  V  L  L  I  P  K  I  L  Q  R  T  S  L  A  T  S  K  L  R  R  *  A  R  G  L  V  A  R  Q  M  *  L  I  I  P  Q  L  L  H  Q  M  L  E  R  K  Q  E  M  S  H  L  L  H  Y  L  R  E  K  M  K  N  N  K  S  H  N  H  L  C  H  R  N  L  H  W  K  R  T  L  F  L  V  L  L  S  R  V  Q  K  E  P  F  Q  L  K  K  S  C  L  P  H  Q  I  Q  Q  N  R  R  K  W  L  L  A  V  V  V  V  M  L  L  P  L  Q  R  K  I  N  K  T  G  S  V  Q  T  D  L  I  L  Q  L  P  I  S  R  V  K  T  I  D  P  P  M  F  S  L  T  V  H  V  T  L  I  H  C  Q  H  Q  I  *  C  Y  M  V  H  *  K  E  L  S  *  F  P  G  *  *  S  I  *  P  I  T  L  V  *  N  W  S  T  Y   </second_frame>
            <third_frame>   G  C  Q  *  D  K   : *  Y  C  S  *  H  A  Q  S  F  G  K  E  S  P  S  *  A  T  E  V  T  *  K  S  V  P  G  E  C  Q  P  *  K  S  S  S  V   : D  L  N  I  L  L  C  Q  D  I  T  L  R  G  I  L  V  C  Q   : G  S  N  F  V  R  S  S  Q  S  H  S  T  S  P  S  S  A  C  Y  S  H  P  Y  S  S  E  N  I  *  *  C  *  L  G  Q  H  D  I  *  F  C  L  Q  S  W  S  S  I  N  S  S  V  A  T  D  *  A  I  L  *  S  Q  W  G  R  S  H  K  R  S  T  N  S  R  E  W  *  R  R  Y  Q  G  K  G  Y  H  E  T  G  T  *  Q  Q  G  *  N  Q  E  Q  T  C  I  *  S  *  N  Q  R  N  T  S  S  *  L  *  W  *  G  C  A  T  F  *  L  E  T  *  S  Q  S  *  Q  N  G  T  C  *  I  Q  R  *  H  *  S  I  V  *  S  K  I  E  *  S  N  S  E  K  H  F  T  T  G  P  K  S  *  A  *  V  C  R  S  W  Y  F  *  F  Q  R  S  S  R  E  H  L  *  Q  Q  A  S  *  E  G  K  P  G  D  W  S  H  D  K  C  S  *  *  F  R  N  F  S  I  R  C  *  R  E  N  R  K  C  P  I  Y  F  T  T  *  E  R  R  *  K  T  T  S  L  T  T  I  C  A  I  E  T  C  I  G  R  E  H  C  S  W  C  C  S  R  G  F  K  K  N  P  S  N  *  R  R  A  V  S  P  T  K  S  S  R  I  E  G  N  G  Y  *  P  *  *  *  *  C  F  Y  H  C  R  E  R  *  T  R  R  A  A  F  K  Q  T  *  F  Y  S  S  R  S  V  E  *  R  Q  L  I  H  L  C  F  H  *  Q  F  M  *  H  *  F  I  V  N  T  R  F  D  V  T  W  S  I  E  K  S  C  L  D  F  Q  D  S  E  V  F  S  L  S  L  *  Y  K  I  G  Q  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64703" stop="64723"/>
                    <exon start="64812" stop="64925"/>
                    <exon start="65824" stop="65880"/>
                    <exon start="66645" stop="67610"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1155</number_coding_nucleotides>
                  <number_encoded_amino_acids>385</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDVSKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALLILISCFVKTSHFEEYLCVKEAILLDLLRVIRHHRARLATPIRTVQKIYSDADLDNMTYDSAFSRGAASTRPLLLIEPSYKVNGEDRTKGRPIRVNGEEDTKEKATMKPAPDSKVETKSRPASDPKIKETLPANSNGKDVPLSDLKLDPKVDKMAHAESKDDIKASSDPKSSKATVKNTSQPVPKAELKSAEVGTSDSKDPPENISSNKQVEKVSQGIGRTTNVVDNSATSPSDVREKTGNVPSTSLPKREDEKQQVSQPSVPSKPALEENIVLGVALEGSKRTLPIEEELSPPPNPAESKEMATSRSSSNASTIAEKDKQDGQRSNRPNSTAPDQSSKDN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="74370" PGL_stop="66600"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74370" e_stop="73806"/>
            <exon e_start="72054" e_stop="71992"/>
            <exon e_start="71889" e_stop="71808"/>
            <exon e_start="71658" e_stop="71588"/>
            <exon e_start="71460" e_stop="71372"/>
            <exon e_start="71292" e_stop="71089"/>
            <exon e_start="70704" e_stop="70434"/>
            <exon e_start="70198" e_stop="69971"/>
            <exon e_start="69856" e_stop="69659"/>
            <exon e_start="68911" e_stop="68331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74370" e_stop="73806" e_length="565"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72054" e_stop="71992" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71889" e_stop="71808" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71658" e_stop="71588" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.680">
            <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71460" e_stop="71372" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.986">
            <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71292" e_stop="71089" e_length="204"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70704" e_stop="70434" e_length="271"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70198" e_stop="69971" e_length="228"/>
          </exon>
          <intron i_serial="8" don_prob="0.967" acc_prob="0.983">
            <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69856" e_stop="69659" e_length="198"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747"/>
          </intron>
          <exon e_serial="10" e_score="0.963">
            <gDNA_exon_boundary e_start="68911" e_stop="68331" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74370" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74313" stop="73806"/>
              <exon start="72054" stop="72018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74311" stop="73809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74177" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71588"/>
              <exon start="71460" stop="71450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74177" stop="73819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74176" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71588"/>
              <exon start="71460" stop="71450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74176" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74175" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71588"/>
              <exon start="71460" stop="71407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74171" stop="73812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74169" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74166" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74163" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71588"/>
              <exon start="71460" stop="71372"/>
              <exon start="71292" stop="71180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74143" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71588"/>
              <exon start="71460" stop="71372"/>
              <exon start="71292" stop="71199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74136" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71588"/>
              <exon start="71460" stop="71372"/>
              <exon start="71292" stop="71246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74135" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74130" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74125" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74097" stop="73806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74083" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71588"/>
              <exon start="71460" stop="71372"/>
              <exon start="71292" stop="71199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74073" stop="73806"/>
              <exon start="72054" stop="71992"/>
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          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGGTGTAAACACCTTTGCATCTTGATAATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT : GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT : TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA : CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG : ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG : CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG : TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG : GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG : GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG : GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTA</gDNA_template>
            <first_frame> N  W  C  K  H  L  C  I  L  I  I  D  K  D  N  P  P  P  K  H  L  H  F  T  K  T  N  F  C  S  S  K  I  T  S  V  W  Q  L  *  A  C  C  L  L  V  W  F  Y  Y  M  H  *  F  L  V  Y  V  L  I  L  Y  G  R  G  E  I  G  A  P  M  *  D  A  F  T  E  A  H  N  D  I  G  P  S  L  L  F  L  L  I  L  D  F  F  L  S  F  F  L  E  K  R  L  L  F  F  F  L  V  F  L  T  F  K  F  L  R  V  F  R  H  T  L  F  F  I  L  L  Y  I  F  I  R  G  V  S  Q  I  P  K  I  H  C  S  K  K  K  K  K  R  K  Q  H  E  W  K  S  *  R  R  G  C  Y  G  W  S  Y  C  G  S  F  D  C  L  L  Y  Y  F  *  L  W  L  T  H  H  S  F   : *  F  E  C  S  K  I  Q  A  L  T  S  C  E  E  C  Y  T  T  P  N   : F  Q  *  R  T  V  T  A  L  D  T  F  G  T  P  R  M  E  T  L  Y  *  I  *  C  C  I  H :   S  T  *  K  I  *  G  I  R  S  S  V  P  *  W  W  T  K  S  T  E  D  G   : D  L  *  C  S  C  R  C  Q  N  S  E  C  H  T  C  D  P  S  V  G  S  K  S  C  L  A  R  F  K  :  L  I  R  G  Y  L  *  C  G  S  L  H  Q  C  I  E  R  R  R  S  Y  S  Q  R  V  A  *  *  I  L  L  E  H  T  R  I  L  W  H  S  Y  P  T  Y  K  N  Q  D  C  S  S  S  C  F  S  K  L  V  F  R  E  C  V  T  C  T  A  E  :  L  W  N  C  C  H  S  S  I  F  S  P  T  D  I  *  Q  H  A  Q  V  P  P  T  P  T  M  *  S  Q  L  S  S  I  G  L  C  S  S  H  Q  T  T  R  G  C  P  Y  H  S  P  *  V  S  S  *  *  R  Q  H  G  *  *  Q  L  P  *  R  G  Y  *  S  K  A  Q  T  R  S  W  Q  V  C  C  S  S  P  S  L  *  Q   : G  Y  G  C  S  F  S  L  *  F  W  W  R  Q  G  *  K  F  G  S  S  *  I  Q  A  S  N  L  G  R  K  G  H  Q  L  S  I  Y  *  *  R  I  K  E  S  R  K  V  P  I  D  S  R  R  S  W  I  A  A  G  S  F  G  I  *  Q  Q  H  S  P  I  S  C  L  P  *   : G  L  W  R  G  T  Q  G  F  S  L  K  K  F  V  S  P  D  G  R  *  K  E  P  C  F  F  *  G  K  S  S  Y  Q  R  K  G  F  I  I  G  C  S  *  L  L  C  W  H  A  Q  *  Y  F  C  F  R  L  P  W  K  Y  A  Q  C  N   : G  R  T  E  N  I  Q  Q  Y  E  D  N  K  A  K  Y  G  I  V  R  P  A  F  L  E  Q  D  T  H  L  A  *  V  S  R  I  S  N  *  R  A  P  K  Q  T  R  P  N  Q  T  P  Q  T  Q  A  I  P  L  Y  I  S  C  S  *  L  Y  V  P  S  L  R  G  P  T  I  *  I  F  I  T  I  C  L  D  I  K  L  L  F  I  M  P  Y  I  I  V  I  N  K  M  P  P  L  L  L  T  C  R  G  *  F  I  F  M  C  H  H  V  E  I  L  R  *  G  W  K  E  Y  V  V  Q  Y  V  Y  Y  S  Y  E  E  C  I  Y  R  *  *  Y  S  S  L  D  R  Y  I  L  L  C  N  V  S  S  C  S  L  F  K  R  V  V  C  F  I  W  L  M  *  Q  R  L  I  I  L  S  N  G  S  *  W  N  *  F  H  Y  C  L </first_frame>
            <second_frame>  I  G  V  N  T  F  A  S  *  *  L  I  K  T  T  H  P  Q  S  I  Y  T  S  Q  K  L  I  F  V  A  V  K  S  L  Q  C  G  S  C  K  L  A  V  C  L  F  G  F  I  I  C  I  D  F  W  Y  M  C  *  Y  Y  M  E  G  E  R  *  V  P  P  C  E  M  L  L  L  R  L  I  M  I  L  A  P  L  Y  S  S  Y  *  F  L  I  S  F  S  L  S  S  L  K  K  D  C  F  F  S  F  L  Y  S  L  L  S  S  F  *  E  F  L  G  T  P  F  S  L  F  C  F  I  F  S  L  G  G  *  A  K  Y  Q  K  Y  T  A  A  R  R  R  R  R  E  S  S  M  S  G  N  H  R  G  G  G  A  M  A  G  L  I  V  V  L  L  T  V  Y  F  T  T  F  S  Y  G  S  P  T  I  L  S  :  D  L  N  A  P  K  F  R  H  S  R  L  A  K  S  A  I  Q  R  Q  T  :  S  N  E  E  Q  S  R  L  W  T  P  L  E  H  Q  G  W  K  P  C  T  K  S  D  A  A  S   : T  V  P  E  K  S  E  G  Y  V  Q  V  F  L  D  G  G  L  N  Q  Q  R  M  G  :  I  C  D  A  V  V  V  A  K  I  L  N  A  T  L  V  I  P  Q  L  E  V  N  P  V  W  Q  D  S  S :   S  F  E  D  I  F  D  V  D  H  F  I  N  A  L  K  D  D  V  A  I  V  K  E  L  P  D  E  F  S  W  S  T  R  E  Y  Y  G  I  A  I  R  P  T  R  I  K  T  A  P  V  H  A  S  A  N  W  Y  L  E  N  V  S  P  V  L  Q  S :   Y  G  I  A  A  I  A  P  F  S  H  R  L  T  F  D  N  M  P  K  Y  L  Q  H  L  R  C  K  V  N  F  Q  A  L  A  F  V  P  H  I  R  Q  L  G  D  A  L  I  T  R  L  R  F  P  P  S  E  D  N  M  V  S  N  N  Y  L  R  E  V  T  D  L  K  P  K  Q  G  V  G  K  F  A  V  L  H  L  R  F  D  K  :  D  M  A  A  H  S  A  C  D  F  G  G  G  K  A  E  N  L  A  L  A  K  Y  R  Q  V  I  W  G  G  R  V  I  N  S  Q  F  T  D  E  E  L  R  S  Q  G  R  C  P  L  T  P  E  E  V  G  L  L  L  A  A  L  G  F  D  N  N  T  R  L  Y  L  A  S  H  K  :  V  Y  G  G  E  R  R  V  S  A  L  R  S  L  F  P  L  M  E  D  K  K  S  L  A  S  S  E  E  R  A  L  I  K  G  K  A  S  L  L  A  A  V  D  Y  Y  V  G  M  H  S  D  I  F  V  S  A  S  P  G  N  M  H  N  A  M  :  V  G  Q  R  T  Y  N  N  M  K  T  I  R  P  N  M  A  L  L  G  Q  L  F  L  N  K  T  L  T  W  P  E  F  Q  E  S  V  I  E  G  H  Q  N  R  Q  G  Q  I  R  L  R  K  P  K  Q  S  L  Y  T  Y  P  A  P  D  C  M  C  Q  A  *  E  G  L  P  Y  R  S  L  S  L  F  V  W  T  S  N  Y  C  L  L  C  L  I  L  *  L  *  I  R  C  H  P  F  C  *  L  V  G  G  N  L  Y  L  C  V  T  T  L  R  F  Y  G  R  G  G  R  N  M  L  Y  N  M  C  I  T  P  M  K  S  A  Y  T  D  S  S  I  L  V  L  T  D  I  F  Y  Y  V  M  S  V  L  V  V  Y  S  K  G  W  F  V  S  F  G  *  C  S  R  G  *  *  Y  Y  Q  M  A  A  S  G  I  D  F  I  I  A   </second_frame>
            <third_frame>   L  V  *  T  P  L  H  L  D  N  *  *  R  Q  P  T  P  K  A  F  T  L  H  K  N  *  F  L  *  Q  *  N  H  F  S  V  A  A  V  S  L  L  F  A  C  L  V  L  L  Y  A  L  I  F  G  I  C  V  D  I  I  W  K  G  R  D  R  C  P  H  V  R  C  F  Y  *  G  S  *  *  Y  W  P  L  F  T  L  P  T  D  S  *  F  L  S  L  F  L  P  *  K  K  I  A  F  F  L  S  C  I  P  Y  F  Q  V  F  E  S  F  *  A  H  P  F  L  Y  F  A  L  Y  F  H  *  G  G  E  P  N  T  K  N  T  L  Q  Q  E  E  E  E  E  K  A  A  *  V  E  I  I  E  E  G  V  L  W  L  V  L  L  W  F  F  *  L  F  T  L  L  L  L  A  M  A  H  P  P  F  F  L :   I  *  M  L  Q  N  S  G  T  H  V  L  R  R  V  L  Y  N  A  K  L :   P  M  K  N  S  H  G  F  G  H  L  W  N  T  K  D  G  N  L  V  L  N  L  M  L  H  P  :  Q  Y  L  K  N  L  R  D  T  F  K  C  S  L  M  V  D  *  I  N  R  G  W  G :   S  V  M  Q  L  S  L  P  K  F  *  M  P  H  L  *  S  L  S  W  K  *  I  L  F  G  K  I  Q   : A  H  S  R  I  S  L  M  W  I  T  S  S  M  H  *  K  T  T  *  L  *  S  K  S  C  L  M  N  S  L  G  A  H  E  N  I  M  A  *  L  S  D  L  Q  E  S  R  L  L  Q  F  M  L  Q  Q  I  G  I  *  R  M  C  H  L  Y  C  R   : V  M  E  L  L  P  *  L  H  F  L  T  D  *  H  L  T  T  C  P  S  T  S  N  T  Y  D  V  K  S  T  F  K  H  W  P  L  F  L  T  S  D  N  S  G  M  P  L  S  L  A  L  G  F  L  L  V  K  T  T  W  L  V  T  T  T  L  E  R  L  L  I  *  S  P  N  K  E  L  A  S  L  L  F  F  T  F  A  L  T  R :   I  W  L  L  I  Q  P  V  I  L  V  A  A  R  L  K  I  W  L  *  L  N  T  G  K  *  F  G  E  E  G  S  S  T  L  N  L  L  M  K  N  *  G  V  K  E  G  A  H  *  L  P  K  K  L  D  C  C  W  Q  L  W  D  L  T  T  T  L  A  Y  I  L  P  P  I  R :   F  M  A  G  N  A  G  F  Q  P  *  E  V  C  F  P  *  W  K  I  K  R  A  L  L  L  L  R  K  E  L  L  S  K  E  R  L  H  Y  W  L  Q  L  I  I  M  L  A  C  T  V  I  F  L  F  P  P  P  L  E  I  C  T  M  Q  W :   S  D  R  E  H  T  T  I  *  R  Q  *  G  Q  I  W  H  C  *  A  S  F  S  *  T  R  H  S  L  G  L  S  F  K  N  Q  *  L  K  G  T  K  T  D  K  A  K  S  D  S  A  N  P  S  N  P  S  I  H  I  L  L  L  I  V  C  A  K  L  E  R  A  Y  H  I  D  L  Y  H  Y  L  F  G  H  Q  I  I  V  Y  Y  A  L  Y  Y  S  Y  K  *  D  A  T  P  F  V  D  L  *  G  V  I  Y  I  Y  V  S  P  R  *  D  F  T  V  G  V  E  G  I  C  C  T  I  C  V  L  L  L  *  R  V  H  I  Q  I  V  V  F  *  S  *  Q  I  Y  F  T  M  *  C  Q  F  L  *  F  I  Q  K  G  G  L  F  H  L  V  D  V  A  E  V  D  N  I  I  K  W  Q  L  V  E  L  I  S  L  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73961" stop="73806"/>
                    <exon start="72054" stop="71992"/>
                    <exon start="71889" stop="71808"/>
                    <exon start="71658" stop="71588"/>
                    <exon start="71460" stop="71372"/>
                    <exon start="71292" stop="71089"/>
                    <exon start="70704" stop="70434"/>
                    <exon start="70198" stop="69971"/>
                    <exon start="69856" stop="69659"/>
                    <exon start="68911" stop="68702"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1569</number_coding_nucleotides>
                  <number_encoded_amino_acids>523</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKYQKYTAARRRRRESSMSGNHRGGGAMAGLIVVLLTVYFTTFSYGSPTILSDLNAPKFRHSRLAKSAIQRQTSNEEQSRLWTPLEHQGWKPCTKSDAASTVPEKSEGYVQVFLDGGLNQQRMGICDAVVVAKILNATLVIPQLEVNPVWQDSSSFEDIFDVDHFINALKDDVAIVKELPDEFSWSTREYYGIAIRPTRIKTAPVHASANWYLENVSPVLQSYGIAAIAPFSHRLTFDNMPKYLQHLRCKVNFQALAFVPHIRQLGDALITRLRFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLALAKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLLAALGFDNNTRLYLASHKVYGGERRVSALRSLFPLMEDKKSLASSEERALIKGKASLLAAVDYYVGMHSDIFVSASPGNMHNAMVGQRTYNNMKTIRPNMALLGQLFLNKTLTWPEFQESVIEGHQNRQGQIRLRKPKQSLYTYPAPDCMCQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68596" stop="68393"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGGNLYLCVTTLRFYGRGGRNMLYNMCITPMKSAYTDSSILVLTDIFYYVMSVLVVYSKGWFVSFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74370" e_stop="73806"/>
            <exon e_start="72054" e_stop="71992"/>
            <exon e_start="71889" e_stop="71808"/>
            <exon e_start="71658" e_stop="71588"/>
            <exon e_start="71460" e_stop="71372"/>
            <exon e_start="71292" e_stop="71089"/>
            <exon e_start="70704" e_stop="70434"/>
            <exon e_start="70198" e_stop="69971"/>
            <exon e_start="69856" e_stop="69659"/>
            <exon e_start="68911" e_stop="68342"/>
            <exon e_start="67890" e_stop="67871"/>
            <exon e_start="66629" e_stop="66606"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.842" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.550"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74370" e_stop="73806" e_length="565"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72054" e_stop="71992" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71889" e_stop="71808" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71658" e_stop="71588" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.680">
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            <referenceDNA id="SGN-E294819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71160" stop="71089"/>
              <exon start="70704" stop="70434"/>
              <exon start="70198" stop="70126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71117" stop="71089"/>
              <exon start="70704" stop="70434"/>
              <exon start="70198" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70680" stop="70434"/>
              <exon start="70198" stop="69971"/>
              <exon start="69856" stop="69801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70624" stop="70434"/>
              <exon start="70198" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70609" stop="70434"/>
              <exon start="70198" stop="69971"/>
              <exon start="69856" stop="69841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70608" stop="70434"/>
              <exon start="70198" stop="69971"/>
              <exon start="69856" stop="69710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70594" stop="70434"/>
              <exon start="70198" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70594" stop="70434"/>
              <exon start="70198" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70531" stop="70434"/>
              <exon start="70198" stop="70104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70519" stop="70434"/>
              <exon start="70198" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70466" stop="70434"/>
              <exon start="70198" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70448" stop="70434"/>
              <exon start="70198" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70194" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70119" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70114" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70083" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615471" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70078" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70019" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70017" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69827" stop="69659"/>
              <exon start="68911" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577812" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69803" stop="69659"/>
              <exon start="68911" stop="68796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69744" stop="69659"/>
              <exon start="68911" stop="68596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69730" stop="69659"/>
              <exon start="68911" stop="68342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69685" stop="69659"/>
              <exon start="68911" stop="68342"/>
              <exon start="67890" stop="67871"/>
              <exon start="66629" stop="66606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68911" stop="68516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68905" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580581" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68883" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68848" stop="68516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68837" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68753" stop="68458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68729" stop="68342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68725" stop="68342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGGTGTAAACACCTTTGCATCTTGATAATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT : GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT : TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA : CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG : ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG : CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG : TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG : GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG : GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG : GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTC : CATGACTGAGAAAAATGACA : AAAAAAAGAAAAAGTCAAAACACA</gDNA_template>
            <first_frame> N  W  C  K  H  L  C  I  L  I  I  D  K  D  N  P  P  P  K  H  L  H  F  T  K  T  N  F  C  S  S  K  I  T  S  V  W  Q  L  *  A  C  C  L  L  V  W  F  Y  Y  M  H  *  F  L  V  Y  V  L  I  L  Y  G  R  G  E  I  G  A  P  M  *  D  A  F  T  E  A  H  N  D  I  G  P  S  L  L  F  L  L  I  L  D  F  F  L  S  F  F  L  E  K  R  L  L  F  F  F  L  V  F  L  T  F  K  F  L  R  V  F  R  H  T  L  F  F  I  L  L  Y  I  F  I  R  G  V  S  Q  I  P  K  I  H  C  S  K  K  K  K  K  R  K  Q  H  E  W  K  S  *  R  R  G  C  Y  G  W  S  Y  C  G  S  F  D  C  L  L  Y  Y  F  *  L  W  L  T  H  H  S  F   : *  F  E  C  S  K  I  Q  A  L  T  S  C  E  E  C  Y  T  T  P  N   : F  Q  *  R  T  V  T  A  L  D  T  F  G  T  P  R  M  E  T  L  Y  *  I  *  C  C  I  H :   S  T  *  K  I  *  G  I  R  S  S  V  P  *  W  W  T  K  S  T  E  D  G   : D  L  *  C  S  C  R  C  Q  N  S  E  C  H  T  C  D  P  S  V  G  S  K  S  C  L  A  R  F  K  :  L  I  R  G  Y  L  *  C  G  S  L  H  Q  C  I  E  R  R  R  S  Y  S  Q  R  V  A  *  *  I  L  L  E  H  T  R  I  L  W  H  S  Y  P  T  Y  K  N  Q  D  C  S  S  S  C  F  S  K  L  V  F  R  E  C  V  T  C  T  A  E  :  L  W  N  C  C  H  S  S  I  F  S  P  T  D  I  *  Q  H  A  Q  V  P  P  T  P  T  M  *  S  Q  L  S  S  I  G  L  C  S  S  H  Q  T  T  R  G  C  P  Y  H  S  P  *  V  S  S  *  *  R  Q  H  G  *  *  Q  L  P  *  R  G  Y  *  S  K  A  Q  T  R  S  W  Q  V  C  C  S  S  P  S  L  *  Q   : G  Y  G  C  S  F  S  L  *  F  W  W  R  Q  G  *  K  F  G  S  S  *  I  Q  A  S  N  L  G  R  K  G  H  Q  L  S  I  Y  *  *  R  I  K  E  S  R  K  V  P  I  D  S  R  R  S  W  I  A  A  G  S  F  G  I  *  Q  Q  H  S  P  I  S  C  L  P  *   : G  L  W  R  G  T  Q  G  F  S  L  K  K  F  V  S  P  D  G  R  *  K  E  P  C  F  F  *  G  K  S  S  Y  Q  R  K  G  F  I  I  G  C  S  *  L  L  C  W  H  A  Q  *  Y  F  C  F  R  L  P  W  K  Y  A  Q  C  N   : G  R  T  E  N  I  Q  Q  Y  E  D  N  K  A  K  Y  G  I  V  R  P  A  F  L  E  Q  D  T  H  L  A  *  V  S  R  I  S  N  *  R  A  P  K  Q  T  R  P  N  Q  T  P  Q  T  Q  A  I  P  L  Y  I  S  C  S  *  L  Y  V  P  S  L  R  G  P  T  I  *  I  F  I  T  I  C  L  D  I  K  L  L  F  I  M  P  Y  I  I  V  I  N  K  M  P  P  L  L  L  T  C  R  G  *  F  I  F  M  C  H  H  V  E  I  L  R  *  G  W  K  E  Y  V  V  Q  Y  V  Y  Y  S  Y  E  E  C  I  Y  R  *  *  Y  S  S  L  D  R  Y  I  L  L  C  N  V  S  S  C  S  L  F  K  R  V  V  C  F  I  W  L  M  *  Q  R  L  I  I  L  S  N  G  S  *  W  N  *  F   : P  *  L  R  K  M  T  :  K  K  R  K  S  Q  N  T </first_frame>
            <second_frame>  I  G  V  N  T  F  A  S  *  *  L  I  K  T  T  H  P  Q  S  I  Y  T  S  Q  K  L  I  F  V  A  V  K  S  L  Q  C  G  S  C  K  L  A  V  C  L  F  G  F  I  I  C  I  D  F  W  Y  M  C  *  Y  Y  M  E  G  E  R  *  V  P  P  C  E  M  L  L  L  R  L  I  M  I  L  A  P  L  Y  S  S  Y  *  F  L  I  S  F  S  L  S  S  L  K  K  D  C  F  F  S  F  L  Y  S  L  L  S  S  F  *  E  F  L  G  T  P  F  S  L  F  C  F  I  F  S  L  G  G  *  A  K  Y  Q  K  Y  T  A  A  R  R  R  R  R  E  S  S  M  S  G  N  H  R  G  G  G  A  M  A  G  L  I  V  V  L  L  T  V  Y  F  T  T  F  S  Y  G  S  P  T  I  L  S  :  D  L  N  A  P  K  F  R  H  S  R  L  A  K  S  A  I  Q  R  Q  T  :  S  N  E  E  Q  S  R  L  W  T  P  L  E  H  Q  G  W  K  P  C  T  K  S  D  A  A  S   : T  V  P  E  K  S  E  G  Y  V  Q  V  F  L  D  G  G  L  N  Q  Q  R  M  G  :  I  C  D  A  V  V  V  A  K  I  L  N  A  T  L  V  I  P  Q  L  E  V  N  P  V  W  Q  D  S  S :   S  F  E  D  I  F  D  V  D  H  F  I  N  A  L  K  D  D  V  A  I  V  K  E  L  P  D  E  F  S  W  S  T  R  E  Y  Y  G  I  A  I  R  P  T  R  I  K  T  A  P  V  H  A  S  A  N  W  Y  L  E  N  V  S  P  V  L  Q  S :   Y  G  I  A  A  I  A  P  F  S  H  R  L  T  F  D  N  M  P  K  Y  L  Q  H  L  R  C  K  V  N  F  Q  A  L  A  F  V  P  H  I  R  Q  L  G  D  A  L  I  T  R  L  R  F  P  P  S  E  D  N  M  V  S  N  N  Y  L  R  E  V  T  D  L  K  P  K  Q  G  V  G  K  F  A  V  L  H  L  R  F  D  K  :  D  M  A  A  H  S  A  C  D  F  G  G  G  K  A  E  N  L  A  L  A  K  Y  R  Q  V  I  W  G  G  R  V  I  N  S  Q  F  T  D  E  E  L  R  S  Q  G  R  C  P  L  T  P  E  E  V  G  L  L  L  A  A  L  G  F  D  N  N  T  R  L  Y  L  A  S  H  K  :  V  Y  G  G  E  R  R  V  S  A  L  R  S  L  F  P  L  M  E  D  K  K  S  L  A  S  S  E  E  R  A  L  I  K  G  K  A  S  L  L  A  A  V  D  Y  Y  V  G  M  H  S  D  I  F  V  S  A  S  P  G  N  M  H  N  A  M  :  V  G  Q  R  T  Y  N  N  M  K  T  I  R  P  N  M  A  L  L  G  Q  L  F  L  N  K  T  L  T  W  P  E  F  Q  E  S  V  I  E  G  H  Q  N  R  Q  G  Q  I  R  L  R  K  P  K  Q  S  L  Y  T  Y  P  A  P  D  C  M  C  Q  A  *  E  G  L  P  Y  R  S  L  S  L  F  V  W  T  S  N  Y  C  L  L  C  L  I  L  *  L  *  I  R  C  H  P  F  C  *  L  V  G  G  N  L  Y  L  C  V  T  T  L  R  F  Y  G  R  G  G  R  N  M  L  Y  N  M  C  I  T  P  M  K  S  A  Y  T  D  S  S  I  L  V  L  T  D  I  F  Y  Y  V  M  S  V  L  V  V  Y  S  K  G  W  F  V  S  F  G  *  C  S  R  G  *  *  Y  Y  Q  M  A  A  S  G  I  D  F  :  H  D  *  E  K  *  Q :   K  K  E  K  V  K  T   </second_frame>
            <third_frame>   L  V  *  T  P  L  H  L  D  N  *  *  R  Q  P  T  P  K  A  F  T  L  H  K  N  *  F  L  *  Q  *  N  H  F  S  V  A  A  V  S  L  L  F  A  C  L  V  L  L  Y  A  L  I  F  G  I  C  V  D  I  I  W  K  G  R  D  R  C  P  H  V  R  C  F  Y  *  G  S  *  *  Y  W  P  L  F  T  L  P  T  D  S  *  F  L  S  L  F  L  P  *  K  K  I  A  F  F  L  S  C  I  P  Y  F  Q  V  F  E  S  F  *  A  H  P  F  L  Y  F  A  L  Y  F  H  *  G  G  E  P  N  T  K  N  T  L  Q  Q  E  E  E  E  E  K  A  A  *  V  E  I  I  E  E  G  V  L  W  L  V  L  L  W  F  F  *  L  F  T  L  L  L  L  A  M  A  H  P  P  F  F  L :   I  *  M  L  Q  N  S  G  T  H  V  L  R  R  V  L  Y  N  A  K  L :   P  M  K  N  S  H  G  F  G  H  L  W  N  T  K  D  G  N  L  V  L  N  L  M  L  H  P  :  Q  Y  L  K  N  L  R  D  T  F  K  C  S  L  M  V  D  *  I  N  R  G  W  G :   S  V  M  Q  L  S  L  P  K  F  *  M  P  H  L  *  S  L  S  W  K  *  I  L  F  G  K  I  Q   : A  H  S  R  I  S  L  M  W  I  T  S  S  M  H  *  K  T  T  *  L  *  S  K  S  C  L  M  N  S  L  G  A  H  E  N  I  M  A  *  L  S  D  L  Q  E  S  R  L  L  Q  F  M  L  Q  Q  I  G  I  *  R  M  C  H  L  Y  C  R   : V  M  E  L  L  P  *  L  H  F  L  T  D  *  H  L  T  T  C  P  S  T  S  N  T  Y  D  V  K  S  T  F  K  H  W  P  L  F  L  T  S  D  N  S  G  M  P  L  S  L  A  L  G  F  L  L  V  K  T  T  W  L  V  T  T  T  L  E  R  L  L  I  *  S  P  N  K  E  L  A  S  L  L  F  F  T  F  A  L  T  R :   I  W  L  L  I  Q  P  V  I  L  V  A  A  R  L  K  I  W  L  *  L  N  T  G  K  *  F  G  E  E  G  S  S  T  L  N  L  L  M  K  N  *  G  V  K  E  G  A  H  *  L  P  K  K  L  D  C  C  W  Q  L  W  D  L  T  T  T  L  A  Y  I  L  P  P  I  R :   F  M  A  G  N  A  G  F  Q  P  *  E  V  C  F  P  *  W  K  I  K  R  A  L  L  L  L  R  K  E  L  L  S  K  E  R  L  H  Y  W  L  Q  L  I  I  M  L  A  C  T  V  I  F  L  F  P  P  P  L  E  I  C  T  M  Q  W :   S  D  R  E  H  T  T  I  *  R  Q  *  G  Q  I  W  H  C  *  A  S  F  S  *  T  R  H  S  L  G  L  S  F  K  N  Q  *  L  K  G  T  K  T  D  K  A  K  S  D  S  A  N  P  S  N  P  S  I  H  I  L  L  L  I  V  C  A  K  L  E  R  A  Y  H  I  D  L  Y  H  Y  L  F  G  H  Q  I  I  V  Y  Y  A  L  Y  Y  S  Y  K  *  D  A  T  P  F  V  D  L  *  G  V  I  Y  I  Y  V  S  P  R  *  D  F  T  V  G  V  E  G  I  C  C  T  I  C  V  L  L  L  *  R  V  H  I  Q  I  V  V  F  *  S  *  Q  I  Y  F  T  M  *  C  Q  F  L  *  F  I  Q  K  G  G  L  F  H  L  V  D  V  A  E  V  D  N  I  I  K  W  Q  L  V  E  L  I  S :   M  T  E  K  N  D   : K  K  K  K  K  S  K  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73961" stop="73806"/>
                    <exon start="72054" stop="71992"/>
                    <exon start="71889" stop="71808"/>
                    <exon start="71658" stop="71588"/>
                    <exon start="71460" stop="71372"/>
                    <exon start="71292" stop="71089"/>
                    <exon start="70704" stop="70434"/>
                    <exon start="70198" stop="69971"/>
                    <exon start="69856" stop="69659"/>
                    <exon start="68911" stop="68702"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1569</number_coding_nucleotides>
                  <number_encoded_amino_acids>523</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKYQKYTAARRRRRESSMSGNHRGGGAMAGLIVVLLTVYFTTFSYGSPTILSDLNAPKFRHSRLAKSAIQRQTSNEEQSRLWTPLEHQGWKPCTKSDAASTVPEKSEGYVQVFLDGGLNQQRMGICDAVVVAKILNATLVIPQLEVNPVWQDSSSFEDIFDVDHFINALKDDVAIVKELPDEFSWSTREYYGIAIRPTRIKTAPVHASANWYLENVSPVLQSYGIAAIAPFSHRLTFDNMPKYLQHLRCKVNFQALAFVPHIRQLGDALITRLRFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLALAKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLLAALGFDNNTRLYLASHKVYGGERRVSALRSLFPLMEDKKSLASSEERALIKGKASLLAAVDYYVGMHSDIFVSASPGNMHNAMVGQRTYNNMKTIRPNMALLGQLFLNKTLTWPEFQESVIEGHQNRQGQIRLRKPKQSLYTYPAPDCMCQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68596" stop="68393"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGGNLYLCVTTLRFYGRGGRNMLYNMCITPMKSAYTDSSILVLTDIFYYVMSVLVVYSKGWFVSFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="74370" e_stop="73806"/>
            <exon e_start="72054" e_stop="71992"/>
            <exon e_start="71889" e_stop="71808"/>
            <exon e_start="71658" e_stop="71588"/>
            <exon e_start="71460" e_stop="71372"/>
            <exon e_start="71292" e_stop="71089"/>
            <exon e_start="70704" e_stop="70434"/>
            <exon e_start="70198" e_stop="69971"/>
            <exon e_start="69856" e_stop="69659"/>
            <exon e_start="68911" e_stop="68402"/>
            <exon e_start="66642" e_stop="66600"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.651"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74370" e_stop="73806" e_length="565"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72054" e_stop="71992" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71889" e_stop="71808" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71658" e_stop="71588" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.680">
            <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71460" e_stop="71372" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.986">
            <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71292" e_stop="71089" e_length="204"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70704" e_stop="70434" e_length="271"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70198" e_stop="69971" e_length="228"/>
          </exon>
          <intron i_serial="8" don_prob="0.967" acc_prob="0.983">
            <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69856" e_stop="69659" e_length="198"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="68911" e_stop="68402" e_length="510"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68401" i_stop="66643" i_length="1759"/>
          </intron>
          <exon e_serial="11" e_score="0.651">
            <gDNA_exon_boundary e_start="66642" e_stop="66600" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74370" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74313" stop="73806"/>
              <exon start="72054" stop="72018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70448" stop="70434"/>
              <exon start="70198" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70194" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70119" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70114" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70078" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70019" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70017" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69835" stop="69659"/>
              <exon start="68911" stop="68402"/>
              <exon start="66642" stop="66600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616618" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69827" stop="69659"/>
              <exon start="68911" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577812" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69803" stop="69659"/>
              <exon start="68911" stop="68796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69744" stop="69659"/>
              <exon start="68911" stop="68596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68911" stop="68516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68905" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580581" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68883" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68848" stop="68516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68837" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68753" stop="68458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614808" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGGTGTAAACACCTTTGCATCTTGATAATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT : GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT : TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA : CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG : ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG : CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG : TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG : GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG : GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG : GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCA : AATATCATCCAAGAAAAAAAGAAAAAGTCAAAACACAAAGTTG</gDNA_template>
            <first_frame> N  W  C  K  H  L  C  I  L  I  I  D  K  D  N  P  P  P  K  H  L  H  F  T  K  T  N  F  C  S  S  K  I  T  S  V  W  Q  L  *  A  C  C  L  L  V  W  F  Y  Y  M  H  *  F  L  V  Y  V  L  I  L  Y  G  R  G  E  I  G  A  P  M  *  D  A  F  T  E  A  H  N  D  I  G  P  S  L  L  F  L  L  I  L  D  F  F  L  S  F  F  L  E  K  R  L  L  F  F  F  L  V  F  L  T  F  K  F  L  R  V  F  R  H  T  L  F  F  I  L  L  Y  I  F  I  R  G  V  S  Q  I  P  K  I  H  C  S  K  K  K  K  K  R  K  Q  H  E  W  K  S  *  R  R  G  C  Y  G  W  S  Y  C  G  S  F  D  C  L  L  Y  Y  F  *  L  W  L  T  H  H  S  F   : *  F  E  C  S  K  I  Q  A  L  T  S  C  E  E  C  Y  T  T  P  N   : F  Q  *  R  T  V  T  A  L  D  T  F  G  T  P  R  M  E  T  L  Y  *  I  *  C  C  I  H :   S  T  *  K  I  *  G  I  R  S  S  V  P  *  W  W  T  K  S  T  E  D  G   : D  L  *  C  S  C  R  C  Q  N  S  E  C  H  T  C  D  P  S  V  G  S  K  S  C  L  A  R  F  K  :  L  I  R  G  Y  L  *  C  G  S  L  H  Q  C  I  E  R  R  R  S  Y  S  Q  R  V  A  *  *  I  L  L  E  H  T  R  I  L  W  H  S  Y  P  T  Y  K  N  Q  D  C  S  S  S  C  F  S  K  L  V  F  R  E  C  V  T  C  T  A  E  :  L  W  N  C  C  H  S  S  I  F  S  P  T  D  I  *  Q  H  A  Q  V  P  P  T  P  T  M  *  S  Q  L  S  S  I  G  L  C  S  S  H  Q  T  T  R  G  C  P  Y  H  S  P  *  V  S  S  *  *  R  Q  H  G  *  *  Q  L  P  *  R  G  Y  *  S  K  A  Q  T  R  S  W  Q  V  C  C  S  S  P  S  L  *  Q   : G  Y  G  C  S  F  S  L  *  F  W  W  R  Q  G  *  K  F  G  S  S  *  I  Q  A  S  N  L  G  R  K  G  H  Q  L  S  I  Y  *  *  R  I  K  E  S  R  K  V  P  I  D  S  R  R  S  W  I  A  A  G  S  F  G  I  *  Q  Q  H  S  P  I  S  C  L  P  *   : G  L  W  R  G  T  Q  G  F  S  L  K  K  F  V  S  P  D  G  R  *  K  E  P  C  F  F  *  G  K  S  S  Y  Q  R  K  G  F  I  I  G  C  S  *  L  L  C  W  H  A  Q  *  Y  F  C  F  R  L  P  W  K  Y  A  Q  C  N   : G  R  T  E  N  I  Q  Q  Y  E  D  N  K  A  K  Y  G  I  V  R  P  A  F  L  E  Q  D  T  H  L  A  *  V  S  R  I  S  N  *  R  A  P  K  Q  T  R  P  N  Q  T  P  Q  T  Q  A  I  P  L  Y  I  S  C  S  *  L  Y  V  P  S  L  R  G  P  T  I  *  I  F  I  T  I  C  L  D  I  K  L  L  F  I  M  P  Y  I  I  V  I  N  K  M  P  P  L  L  L  T  C  R  G  *  F  I  F  M  C  H  H  V  E  I  L  R  *  G  W  K  E  Y  V  V  Q  Y  V  Y  Y  S  Y  E  E  C  I  Y  R  *  *  Y  S  S  L  D  R  Y  I  L  L  C  N  V  S  S  C  S  L  F  K  R  V  V  C  F   : K  Y  H  P  R  K  K  E  K  V  K  T  Q  S   </first_frame>
            <second_frame>  I  G  V  N  T  F  A  S  *  *  L  I  K  T  T  H  P  Q  S  I  Y  T  S  Q  K  L  I  F  V  A  V  K  S  L  Q  C  G  S  C  K  L  A  V  C  L  F  G  F  I  I  C  I  D  F  W  Y  M  C  *  Y  Y  M  E  G  E  R  *  V  P  P  C  E  M  L  L  L  R  L  I  M  I  L  A  P  L  Y  S  S  Y  *  F  L  I  S  F  S  L  S  S  L  K  K  D  C  F  F  S  F  L  Y  S  L  L  S  S  F  *  E  F  L  G  T  P  F  S  L  F  C  F  I  F  S  L  G  G  *  A  K  Y  Q  K  Y  T  A  A  R  R  R  R  R  E  S  S  M  S  G  N  H  R  G  G  G  A  M  A  G  L  I  V  V  L  L  T  V  Y  F  T  T  F  S  Y  G  S  P  T  I  L  S  :  D  L  N  A  P  K  F  R  H  S  R  L  A  K  S  A  I  Q  R  Q  T  :  S  N  E  E  Q  S  R  L  W  T  P  L  E  H  Q  G  W  K  P  C  T  K  S  D  A  A  S   : T  V  P  E  K  S  E  G  Y  V  Q  V  F  L  D  G  G  L  N  Q  Q  R  M  G  :  I  C  D  A  V  V  V  A  K  I  L  N  A  T  L  V  I  P  Q  L  E  V  N  P  V  W  Q  D  S  S :   S  F  E  D  I  F  D  V  D  H  F  I  N  A  L  K  D  D  V  A  I  V  K  E  L  P  D  E  F  S  W  S  T  R  E  Y  Y  G  I  A  I  R  P  T  R  I  K  T  A  P  V  H  A  S  A  N  W  Y  L  E  N  V  S  P  V  L  Q  S :   Y  G  I  A  A  I  A  P  F  S  H  R  L  T  F  D  N  M  P  K  Y  L  Q  H  L  R  C  K  V  N  F  Q  A  L  A  F  V  P  H  I  R  Q  L  G  D  A  L  I  T  R  L  R  F  P  P  S  E  D  N  M  V  S  N  N  Y  L  R  E  V  T  D  L  K  P  K  Q  G  V  G  K  F  A  V  L  H  L  R  F  D  K  :  D  M  A  A  H  S  A  C  D  F  G  G  G  K  A  E  N  L  A  L  A  K  Y  R  Q  V  I  W  G  G  R  V  I  N  S  Q  F  T  D  E  E  L  R  S  Q  G  R  C  P  L  T  P  E  E  V  G  L  L  L  A  A  L  G  F  D  N  N  T  R  L  Y  L  A  S  H  K  :  V  Y  G  G  E  R  R  V  S  A  L  R  S  L  F  P  L  M  E  D  K  K  S  L  A  S  S  E  E  R  A  L  I  K  G  K  A  S  L  L  A  A  V  D  Y  Y  V  G  M  H  S  D  I  F  V  S  A  S  P  G  N  M  H  N  A  M  :  V  G  Q  R  T  Y  N  N  M  K  T  I  R  P  N  M  A  L  L  G  Q  L  F  L  N  K  T  L  T  W  P  E  F  Q  E  S  V  I  E  G  H  Q  N  R  Q  G  Q  I  R  L  R  K  P  K  Q  S  L  Y  T  Y  P  A  P  D  C  M  C  Q  A  *  E  G  L  P  Y  R  S  L  S  L  F  V  W  T  S  N  Y  C  L  L  C  L  I  L  *  L  *  I  R  C  H  P  F  C  *  L  V  G  G  N  L  Y  L  C  V  T  T  L  R  F  Y  G  R  G  G  R  N  M  L  Y  N  M  C  I  T  P  M  K  S  A  Y  T  D  S  S  I  L  V  L  T  D  I  F  Y  Y  V  M  S  V  L  V  V  Y  S  K  G  W  F  V  S  :  N  I  I  Q  E  K  K  K  K  S  K  H  K  V  </second_frame>
            <third_frame>   L  V  *  T  P  L  H  L  D  N  *  *  R  Q  P  T  P  K  A  F  T  L  H  K  N  *  F  L  *  Q  *  N  H  F  S  V  A  A  V  S  L  L  F  A  C  L  V  L  L  Y  A  L  I  F  G  I  C  V  D  I  I  W  K  G  R  D  R  C  P  H  V  R  C  F  Y  *  G  S  *  *  Y  W  P  L  F  T  L  P  T  D  S  *  F  L  S  L  F  L  P  *  K  K  I  A  F  F  L  S  C  I  P  Y  F  Q  V  F  E  S  F  *  A  H  P  F  L  Y  F  A  L  Y  F  H  *  G  G  E  P  N  T  K  N  T  L  Q  Q  E  E  E  E  E  K  A  A  *  V  E  I  I  E  E  G  V  L  W  L  V  L  L  W  F  F  *  L  F  T  L  L  L  L  A  M  A  H  P  P  F  F  L :   I  *  M  L  Q  N  S  G  T  H  V  L  R  R  V  L  Y  N  A  K  L :   P  M  K  N  S  H  G  F  G  H  L  W  N  T  K  D  G  N  L  V  L  N  L  M  L  H  P  :  Q  Y  L  K  N  L  R  D  T  F  K  C  S  L  M  V  D  *  I  N  R  G  W  G :   S  V  M  Q  L  S  L  P  K  F  *  M  P  H  L  *  S  L  S  W  K  *  I  L  F  G  K  I  Q   : A  H  S  R  I  S  L  M  W  I  T  S  S  M  H  *  K  T  T  *  L  *  S  K  S  C  L  M  N  S  L  G  A  H  E  N  I  M  A  *  L  S  D  L  Q  E  S  R  L  L  Q  F  M  L  Q  Q  I  G  I  *  R  M  C  H  L  Y  C  R   : V  M  E  L  L  P  *  L  H  F  L  T  D  *  H  L  T  T  C  P  S  T  S  N  T  Y  D  V  K  S  T  F  K  H  W  P  L  F  L  T  S  D  N  S  G  M  P  L  S  L  A  L  G  F  L  L  V  K  T  T  W  L  V  T  T  T  L  E  R  L  L  I  *  S  P  N  K  E  L  A  S  L  L  F  F  T  F  A  L  T  R :   I  W  L  L  I  Q  P  V  I  L  V  A  A  R  L  K  I  W  L  *  L  N  T  G  K  *  F  G  E  E  G  S  S  T  L  N  L  L  M  K  N  *  G  V  K  E  G  A  H  *  L  P  K  K  L  D  C  C  W  Q  L  W  D  L  T  T  T  L  A  Y  I  L  P  P  I  R :   F  M  A  G  N  A  G  F  Q  P  *  E  V  C  F  P  *  W  K  I  K  R  A  L  L  L  L  R  K  E  L  L  S  K  E  R  L  H  Y  W  L  Q  L  I  I  M  L  A  C  T  V  I  F  L  F  P  P  P  L  E  I  C  T  M  Q  W :   S  D  R  E  H  T  T  I  *  R  Q  *  G  Q  I  W  H  C  *  A  S  F  S  *  T  R  H  S  L  G  L  S  F  K  N  Q  *  L  K  G  T  K  T  D  K  A  K  S  D  S  A  N  P  S  N  P  S  I  H  I  L  L  L  I  V  C  A  K  L  E  R  A  Y  H  I  D  L  Y  H  Y  L  F  G  H  Q  I  I  V  Y  Y  A  L  Y  Y  S  Y  K  *  D  A  T  P  F  V  D  L  *  G  V  I  Y  I  Y  V  S  P  R  *  D  F  T  V  G  V  E  G  I  C  C  T  I  C  V  L  L  L  *  R  V  H  I  Q  I  V  V  F  *  S  *  Q  I  Y  F  T  M  *  C  Q  F  L  *  F  I  Q  K  G  G  L  F  Q :   I  S  S  K  K  K  R  K  S  Q  N  T  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73961" stop="73806"/>
                    <exon start="72054" stop="71992"/>
                    <exon start="71889" stop="71808"/>
                    <exon start="71658" stop="71588"/>
                    <exon start="71460" stop="71372"/>
                    <exon start="71292" stop="71089"/>
                    <exon start="70704" stop="70434"/>
                    <exon start="70198" stop="69971"/>
                    <exon start="69856" stop="69659"/>
                    <exon start="68911" stop="68702"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1569</number_coding_nucleotides>
                  <number_encoded_amino_acids>523</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKYQKYTAARRRRRESSMSGNHRGGGAMAGLIVVLLTVYFTTFSYGSPTILSDLNAPKFRHSRLAKSAIQRQTSNEEQSRLWTPLEHQGWKPCTKSDAASTVPEKSEGYVQVFLDGGLNQQRMGICDAVVVAKILNATLVIPQLEVNPVWQDSSSFEDIFDVDHFINALKDDVAIVKELPDEFSWSTREYYGIAIRPTRIKTAPVHASANWYLENVSPVLQSYGIAAIAPFSHRLTFDNMPKYLQHLRCKVNFQALAFVPHIRQLGDALITRLRFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLALAKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLLAALGFDNNTRLYLASHKVYGGERRVSALRSLFPLMEDKKSLASSEERALIKGKASLLAAVDYYVGMHSDIFVSASPGNMHNAMVGQRTYNNMKTIRPNMALLGQLFLNKTLTWPEFQESVIEGHQNRQGQIRLRKPKQSLYTYPAPDCMCQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68596" stop="68402"/>
                    <exon start="66642" stop="66601"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGGNLYLCVTTLRFYGRGGRNMLYNMCITPMKSAYTDSSILVLTDIFYYVMSVLVVYSKGWFVSNIIQEKKKKSKHKV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="74370" e_stop="73806"/>
            <exon e_start="72054" e_stop="71992"/>
            <exon e_start="71889" e_stop="71808"/>
            <exon e_start="71658" e_stop="71588"/>
            <exon e_start="71460" e_stop="71372"/>
            <exon e_start="71292" e_stop="70434"/>
            <exon e_start="70198" e_stop="69971"/>
            <exon e_start="69856" e_stop="69659"/>
            <exon e_start="68911" e_stop="68331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74370" e_stop="73806" e_length="565"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72054" e_stop="71992" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71889" e_stop="71808" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71658" e_stop="71588" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.680">
            <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71460" e_stop="71372" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.986">
            <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71292" e_stop="70434" e_length="859"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="70198" e_stop="69971" e_length="228"/>
          </exon>
          <intron i_serial="7" don_prob="0.967" acc_prob="0.983">
            <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69856" e_stop="69659" e_length="198"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747"/>
          </intron>
          <exon e_serial="9" e_score="0.963">
            <gDNA_exon_boundary e_start="68911" e_stop="68331" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74370" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74313" stop="73806"/>
              <exon start="72054" stop="72018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74311" stop="73809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74177" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
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              <exon start="71460" stop="71450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74177" stop="73819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74176" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71588"/>
              <exon start="71460" stop="71450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74176" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74175" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71588"/>
              <exon start="71460" stop="71407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74171" stop="73812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74169" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74166" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74163" stop="73806"/>
              <exon start="72054" stop="71992"/>
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              <exon start="71658" stop="71588"/>
              <exon start="71460" stop="71372"/>
              <exon start="71292" stop="71180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74143" stop="73806"/>
              <exon start="72054" stop="71992"/>
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              <exon start="71658" stop="71588"/>
              <exon start="71460" stop="71372"/>
              <exon start="71292" stop="71199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74136" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71808"/>
              <exon start="71658" stop="71588"/>
              <exon start="71460" stop="71372"/>
              <exon start="71292" stop="71246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74135" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74130" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74125" stop="73806"/>
              <exon start="72054" stop="71992"/>
              <exon start="71889" stop="71816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74097" stop="73806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74083" stop="73806"/>
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              <exon start="71658" stop="71588"/>
              <exon start="71460" stop="71372"/>
              <exon start="71292" stop="71199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74073" stop="73806"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74071" stop="73806"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294296" strand="-"/>
          </PGS_line>
          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E569608" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584714" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437059" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70114" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70083" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615471" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70078" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70019" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70017" stop="69971"/>
              <exon start="69856" stop="69659"/>
              <exon start="68911" stop="68412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69827" stop="69659"/>
              <exon start="68911" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577812" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69806" stop="69659"/>
              <exon start="68911" stop="68331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572793" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69803" stop="69659"/>
              <exon start="68911" stop="68796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69744" stop="69659"/>
              <exon start="68911" stop="68596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69730" stop="69659"/>
              <exon start="68911" stop="68342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589807" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68911" stop="68516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68905" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580581" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68883" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68848" stop="68516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68837" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68753" stop="68458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68729" stop="68342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68725" stop="68342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGGTGTAAACACCTTTGCATCTTGATAATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT : GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT : TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA : CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG : ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG : CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAGGTTAGTCACAACATTGTTTTTTTTGAAGATTTTGGTCTAGTTGTATGATAGTCATGTAAACTGTGTTCAGTCTCTCAACCCACCCGTATGACAAAGTACATGTATAATTGGTAAATTACTGGCAGGATTTAGTGCTCAAAACTTAAGGGAATTCTACAAAAGTTCCATTGCCCAGTATTTTACTATTCATTTTAAGTTGTATGTTCCCTTAAACCAAAAATTTAAGTTAGGCATGGACTAAACATTATGTGTTTGATTTATTTCTTGATATGATCATATTTTGTTCGTTCAGTTATTAGCTTCTGAAGGTAGTAATTCTCTTATCAGCCTTTTGCTGGAATTTGTGACATTGCTTTGTATATTAATATTTTATGAATGGATCAGTTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG : GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG : GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG : GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTA</gDNA_template>
            <first_frame> N  W  C  K  H  L  C  I  L  I  I  D  K  D  N  P  P  P  K  H  L  H  F  T  K  T  N  F  C  S  S  K  I  T  S  V  W  Q  L  *  A  C  C  L  L  V  W  F  Y  Y  M  H  *  F  L  V  Y  V  L  I  L  Y  G  R  G  E  I  G  A  P  M  *  D  A  F  T  E  A  H  N  D  I  G  P  S  L  L  F  L  L  I  L  D  F  F  L  S  F  F  L  E  K  R  L  L  F  F  F  L  V  F  L  T  F  K  F  L  R  V  F  R  H  T  L  F  F  I  L  L  Y  I  F  I  R  G  V  S  Q  I  P  K  I  H  C  S  K  K  K  K  K  R  K  Q  H  E  W  K  S  *  R  R  G  C  Y  G  W  S  Y  C  G  S  F  D  C  L  L  Y  Y  F  *  L  W  L  T  H  H  S  F   : *  F  E  C  S  K  I  Q  A  L  T  S  C  E  E  C  Y  T  T  P  N   : F  Q  *  R  T  V  T  A  L  D  T  F  G  T  P  R  M  E  T  L  Y  *  I  *  C  C  I  H :   S  T  *  K  I  *  G  I  R  S  S  V  P  *  W  W  T  K  S  T  E  D  G   : D  L  *  C  S  C  R  C  Q  N  S  E  C  H  T  C  D  P  S  V  G  S  K  S  C  L  A  R  F  K  :  L  I  R  G  Y  L  *  C  G  S  L  H  Q  C  I  E  R  R  R  S  Y  S  Q  R  V  A  *  *  I  L  L  E  H  T  R  I  L  W  H  S  Y  P  T  Y  K  N  Q  D  C  S  S  S  C  F  S  K  L  V  F  R  E  C  V  T  C  T  A  E  V  S  H  N  I  V  F  F  E  D  F  G  L  V  V  *  *  S  C  K  L  C  S  V  S  Q  P  T  R  M  T  K  Y  M  Y  N  W  *  I  T  G  R  I  *  C  S  K  L  K  G  I  L  Q  K  F  H  C  P  V  F  Y  Y  S  F  *  V  V  C  S  L  K  P  K  I  *  V  R  H  G  L  N  I  M  C  L  I  Y  F  L  I  *  S  Y  F  V  R  S  V  I  S  F  *  R  *  *  F  S  Y  Q  P  F  A  G  I  C  D  I  A  L  Y  I  N  I  L  *  M  D  Q  L  W  N  C  C  H  S  S  I  F  S  P  T  D  I  *  Q  H  A  Q  V  P  P  T  P  T  M  *  S  Q  L  S  S  I  G  L  C  S  S  H  Q  T  T  R  G  C  P  Y  H  S  P  *  V  S  S  *  *  R  Q  H  G  *  *  Q  L  P  *  R  G  Y  *  S  K  A  Q  T  R  S  W  Q  V  C  C  S  S  P  S  L  *  Q   : G  Y  G  C  S  F  S  L  *  F  W  W  R  Q  G  *  K  F  G  S  S  *  I  Q  A  S  N  L  G  R  K  G  H  Q  L  S  I  Y  *  *  R  I  K  E  S  R  K  V  P  I  D  S  R  R  S  W  I  A  A  G  S  F  G  I  *  Q  Q  H  S  P  I  S  C  L  P  *   : G  L  W  R  G  T  Q  G  F  S  L  K  K  F  V  S  P  D  G  R  *  K  E  P  C  F  F  *  G  K  S  S  Y  Q  R  K  G  F  I  I  G  C  S  *  L  L  C  W  H  A  Q  *  Y  F  C  F  R  L  P  W  K  Y  A  Q  C  N   : G  R  T  E  N  I  Q  Q  Y  E  D  N  K  A  K  Y  G  I  V  R  P  A  F  L  E  Q  D  T  H  L  A  *  V  S  R  I  S  N  *  R  A  P  K  Q  T  R  P  N  Q  T  P  Q  T  Q  A  I  P  L  Y  I  S  C  S  *  L  Y  V  P  S  L  R  G  P  T  I  *  I  F  I  T  I  C  L  D  I  K  L  L  F  I  M  P  Y  I  I  V  I  N  K  M  P  P  L  L  L  T  C  R  G  *  F  I  F  M  C  H  H  V  E  I  L  R  *  G  W  K  E  Y  V  V  Q  Y  V  Y  Y  S  Y  E  E  C  I  Y  R  *  *  Y  S  S  L  D  R  Y  I  L  L  C  N  V  S  S  C  S  L  F  K  R  V  V  C  F  I  W  L  M  *  Q  R  L  I  I  L  S  N  G  S  *  W  N  *  F  H  Y  C  L </first_frame>
            <second_frame>  I  G  V  N  T  F  A  S  *  *  L  I  K  T  T  H  P  Q  S  I  Y  T  S  Q  K  L  I  F  V  A  V  K  S  L  Q  C  G  S  C  K  L  A  V  C  L  F  G  F  I  I  C  I  D  F  W  Y  M  C  *  Y  Y  M  E  G  E  R  *  V  P  P  C  E  M  L  L  L  R  L  I  M  I  L  A  P  L  Y  S  S  Y  *  F  L  I  S  F  S  L  S  S  L  K  K  D  C  F  F  S  F  L  Y  S  L  L  S  S  F  *  E  F  L  G  T  P  F  S  L  F  C  F  I  F  S  L  G  G  *  A  K  Y  Q  K  Y  T  A  A  R  R  R  R  R  E  S  S  M  S  G  N  H  R  G  G  G  A  M  A  G  L  I  V  V  L  L  T  V  Y  F  T  T  F  S  Y  G  S  P  T  I  L  S  :  D  L  N  A  P  K  F  R  H  S  R  L  A  K  S  A  I  Q  R  Q  T  :  S  N  E  E  Q  S  R  L  W  T  P  L  E  H  Q  G  W  K  P  C  T  K  S  D  A  A  S   : T  V  P  E  K  S  E  G  Y  V  Q  V  F  L  D  G  G  L  N  Q  Q  R  M  G  :  I  C  D  A  V  V  V  A  K  I  L  N  A  T  L  V  I  P  Q  L  E  V  N  P  V  W  Q  D  S  S :   S  F  E  D  I  F  D  V  D  H  F  I  N  A  L  K  D  D  V  A  I  V  K  E  L  P  D  E  F  S  W  S  T  R  E  Y  Y  G  I  A  I  R  P  T  R  I  K  T  A  P  V  H  A  S  A  N  W  Y  L  E  N  V  S  P  V  L  Q  R  L  V  T  T  L  F  F  L  K  I  L  V  *  L  Y  D  S  H  V  N  C  V  Q  S  L  N  P  P  V  *  Q  S  T  C  I  I  G  K  L  L  A  G  F  S  A  Q  N  L  R  E  F  Y  K  S  S  I  A  Q  Y  F  T  I  H  F  K  L  Y  V  P  L  N  Q  K  F  K  L  G  M  D  *  T  L  C  V  *  F  I  S  *  Y  D  H  I  L  F  V  Q  L  L  A  S  E  G  S  N  S  L  I  S  L  L  L  E  F  V  T  L  L  C  I  L  I  F  Y  E  W  I  S  Y  G  I  A  A  I  A  P  F  S  H  R  L  T  F  D  N  M  P  K  Y  L  Q  H  L  R  C  K  V  N  F  Q  A  L  A  F  V  P  H  I  R  Q  L  G  D  A  L  I  T  R  L  R  F  P  P  S  E  D  N  M  V  S  N  N  Y  L  R  E  V  T  D  L  K  P  K  Q  G  V  G  K  F  A  V  L  H  L  R  F  D  K  :  D  M  A  A  H  S  A  C  D  F  G  G  G  K  A  E  N  L  A  L  A  K  Y  R  Q  V  I  W  G  G  R  V  I  N  S  Q  F  T  D  E  E  L  R  S  Q  G  R  C  P  L  T  P  E  E  V  G  L  L  L  A  A  L  G  F  D  N  N  T  R  L  Y  L  A  S  H  K  :  V  Y  G  G  E  R  R  V  S  A  L  R  S  L  F  P  L  M  E  D  K  K  S  L  A  S  S  E  E  R  A  L  I  K  G  K  A  S  L  L  A  A  V  D  Y  Y  V  G  M  H  S  D  I  F  V  S  A  S  P  G  N  M  H  N  A  M  :  V  G  Q  R  T  Y  N  N  M  K  T  I  R  P  N  M  A  L  L  G  Q  L  F  L  N  K  T  L  T  W  P  E  F  Q  E  S  V  I  E  G  H  Q  N  R  Q  G  Q  I  R  L  R  K  P  K  Q  S  L  Y  T  Y  P  A  P  D  C  M  C  Q  A  *  E  G  L  P  Y  R  S  L  S  L  F  V  W  T  S  N  Y  C  L  L  C  L  I  L  *  L  *  I  R  C  H  P  F  C  *  L  V  G  G  N  L  Y  L  C  V  T  T  L  R  F  Y  G  R  G  G  R  N  M  L  Y  N  M  C  I  T  P  M  K  S  A  Y  T  D  S  S  I  L  V  L  T  D  I  F  Y  Y  V  M  S  V  L  V  V  Y  S  K  G  W  F  V  S  F  G  *  C  S  R  G  *  *  Y  Y  Q  M  A  A  S  G  I  D  F  I  I  A   </second_frame>
            <third_frame>   L  V  *  T  P  L  H  L  D  N  *  *  R  Q  P  T  P  K  A  F  T  L  H  K  N  *  F  L  *  Q  *  N  H  F  S  V  A  A  V  S  L  L  F  A  C  L  V  L  L  Y  A  L  I  F  G  I  C  V  D  I  I  W  K  G  R  D  R  C  P  H  V  R  C  F  Y  *  G  S  *  *  Y  W  P  L  F  T  L  P  T  D  S  *  F  L  S  L  F  L  P  *  K  K  I  A  F  F  L  S  C  I  P  Y  F  Q  V  F  E  S  F  *  A  H  P  F  L  Y  F  A  L  Y  F  H  *  G  G  E  P  N  T  K  N  T  L  Q  Q  E  E  E  E  E  K  A  A  *  V  E  I  I  E  E  G  V  L  W  L  V  L  L  W  F  F  *  L  F  T  L  L  L  L  A  M  A  H  P  P  F  F  L :   I  *  M  L  Q  N  S  G  T  H  V  L  R  R  V  L  Y  N  A  K  L :   P  M  K  N  S  H  G  F  G  H  L  W  N  T  K  D  G  N  L  V  L  N  L  M  L  H  P  :  Q  Y  L  K  N  L  R  D  T  F  K  C  S  L  M  V  D  *  I  N  R  G  W  G :   S  V  M  Q  L  S  L  P  K  F  *  M  P  H  L  *  S  L  S  W  K  *  I  L  F  G  K  I  Q   : A  H  S  R  I  S  L  M  W  I  T  S  S  M  H  *  K  T  T  *  L  *  S  K  S  C  L  M  N  S  L  G  A  H  E  N  I  M  A  *  L  S  D  L  Q  E  S  R  L  L  Q  F  M  L  Q  Q  I  G  I  *  R  M  C  H  L  Y  C  R  G  *  S  Q  H  C  F  F  *  R  F  W  S  S  C  M  I  V  M  *  T  V  F  S  L  S  T  H  P  Y  D  K  V  H  V  *  L  V  N  Y  W  Q  D  L  V  L  K  T  *  G  N  S  T  K  V  P  L  P  S  I  L  L  F  I  L  S  C  M  F  P  *  T  K  N  L  S  *  A  W  T  K  H  Y  V  F  D  L  F  L  D  M  I  I  F  C  S  F  S  Y  *  L  L  K  V  V  I  L  L  S  A  F  C  W  N  L  *  H  C  F  V  Y  *  Y  F  M  N  G  S  V  M  E  L  L  P  *  L  H  F  L  T  D  *  H  L  T  T  C  P  S  T  S  N  T  Y  D  V  K  S  T  F  K  H  W  P  L  F  L  T  S  D  N  S  G  M  P  L  S  L  A  L  G  F  L  L  V  K  T  T  W  L  V  T  T  T  L  E  R  L  L  I  *  S  P  N  K  E  L  A  S  L  L  F  F  T  F  A  L  T  R :   I  W  L  L  I  Q  P  V  I  L  V  A  A  R  L  K  I  W  L  *  L  N  T  G  K  *  F  G  E  E  G  S  S  T  L  N  L  L  M  K  N  *  G  V  K  E  G  A  H  *  L  P  K  K  L  D  C  C  W  Q  L  W  D  L  T  T  T  L  A  Y  I  L  P  P  I  R :   F  M  A  G  N  A  G  F  Q  P  *  E  V  C  F  P  *  W  K  I  K  R  A  L  L  L  L  R  K  E  L  L  S  K  E  R  L  H  Y  W  L  Q  L  I  I  M  L  A  C  T  V  I  F  L  F  P  P  P  L  E  I  C  T  M  Q  W :   S  D  R  E  H  T  T  I  *  R  Q  *  G  Q  I  W  H  C  *  A  S  F  S  *  T  R  H  S  L  G  L  S  F  K  N  Q  *  L  K  G  T  K  T  D  K  A  K  S  D  S  A  N  P  S  N  P  S  I  H  I  L  L  L  I  V  C  A  K  L  E  R  A  Y  H  I  D  L  Y  H  Y  L  F  G  H  Q  I  I  V  Y  Y  A  L  Y  Y  S  Y  K  *  D  A  T  P  F  V  D  L  *  G  V  I  Y  I  Y  V  S  P  R  *  D  F  T  V  G  V  E  G  I  C  C  T  I  C  V  L  L  L  *  R  V  H  I  Q  I  V  V  F  *  S  *  Q  I  Y  F  T  M  *  C  Q  F  L  *  F  I  Q  K  G  G  L  F  H  L  V  D  V  A  E  V  D  N  I  I  K  W  Q  L  V  E  L  I  S  L  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70820" stop="70434"/>
                    <exon start="70198" stop="69971"/>
                    <exon start="69856" stop="69659"/>
                    <exon start="68911" stop="68702"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDHILFVQLLASEGSNSLISLLLEFVTLLCILIFYEWISYGIAAIAPFSHRLTFDNMPKYLQHLRCKVNFQALAFVPHIRQLGDALITRLRFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLALAKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLLAALGFDNNTRLYLASHKVYGGERRVSALRSLFPLMEDKKSLASSEERALIKGKASLLAAVDYYVGMHSDIFVSASPGNMHNAMVGQRTYNNMKTIRPNMALLGQLFLNKTLTWPEFQESVIEGHQNRQGQIRLRKPKQSLYTYPAPDCMCQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73961" stop="73806"/>
                    <exon start="72054" stop="71992"/>
                    <exon start="71889" stop="71808"/>
                    <exon start="71658" stop="71588"/>
                    <exon start="71460" stop="71372"/>
                    <exon start="71292" stop="71049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKYQKYTAARRRRRESSMSGNHRGGGAMAGLIVVLLTVYFTTFSYGSPTILSDLNAPKFRHSRLAKSAIQRQTSNEEQSRLWTPLEHQGWKPCTKSDAASTVPEKSEGYVQVFLDGGLNQQRMGICDAVVVAKILNATLVIPQLEVNPVWQDSSSFEDIFDVDHFINALKDDVAIVKELPDEFSWSTREYYGIAIRPTRIKTAPVHASANWYLENVSPVLQRLVTTLFFLKILV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68596" stop="68393"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGGNLYLCVTTLRFYGRGGRNMLYNMCITPMKSAYTDSSILVLTDIFYYVMSVLVVYSKGWFVSFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="74313" e_stop="73806"/>
            <exon e_start="72054" e_stop="71992"/>
            <exon e_start="71889" e_stop="71808"/>
            <exon e_start="71655" e_stop="71588"/>
            <exon e_start="71460" e_stop="71372"/>
            <exon e_start="71292" e_stop="71089"/>
            <exon e_start="70704" e_stop="70434"/>
            <exon e_start="70198" e_stop="69971"/>
            <exon e_start="69856" e_stop="69659"/>
            <exon e_start="68911" e_stop="68331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="0.951"/>
          <exon-intron don_prob="0.963" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.807" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="74313" e_stop="73806" e_length="508"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72054" e_stop="71992" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71889" e_stop="71808" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.807">
            <gDNA_intron_boundary i_start="71807" i_stop="71656" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71655" e_stop="71588" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.680">
            <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71460" e_stop="71372" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.986">
            <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71292" e_stop="71089" e_length="204"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
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          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT : GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT : TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA : TACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG : ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG : CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG : TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG : GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG : GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG : GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTA</gDNA_template>
            <first_frame> H  L  H  F  T  K  T  N  F  C  S  S  K  I  T  S  V  W  Q  L  *  A  C  C  L  L  V  W  F  Y  Y  M  H  *  F  L  V  Y  V  L  I  L  Y  G  R  G  E  I  G  A  P  M  *  D  A  F  T  E  A  H  N  D  I  G  P  S  L  L  F  L  L  I  L  D  F  F  L  S  F  F  L  E  K  R  L  L  F  F  F  L  V  F  L  T  F  K  F  L  R  V  F  R  H  T  L  F  F  I  L  L  Y  I  F  I  R  G  V  S  Q  I  P  K  I  H  C  S  K  K  K  K  K  R  K  Q  H  E  W  K  S  *  R  R  G  C  Y  G  W  S  Y  C  G  S  F  D  C  L  L  Y  Y  F  *  L  W  L  T  H  H  S  F   : *  F  E  C  S  K  I  Q  A  L  T  S  C  E  E  C  Y  T  T  P  N   : F  Q  *  R  T  V  T  A  L  D  T  F  G  T  P  R  M  E  T  L  Y  *  I  *  C  C  I  H :   T  *  K  I  *  G  I  R  S  S  V  P  *  W  W  T  K  S  T  E  D  G   : D  L  *  C  S  C  R  C  Q  N  S  E  C  H  T  C  D  P  S  V  G  S  K  S  C  L  A  R  F  K  :  L  I  R  G  Y  L  *  C  G  S  L  H  Q  C  I  E  R  R  R  S  Y  S  Q  R  V  A  *  *  I  L  L  E  H  T  R  I  L  W  H  S  Y  P  T  Y  K  N  Q  D  C  S  S  S  C  F  S  K  L  V  F  R  E  C  V  T  C  T  A  E  :  L  W  N  C  C  H  S  S  I  F  S  P  T  D  I  *  Q  H  A  Q  V  P  P  T  P  T  M  *  S  Q  L  S  S  I  G  L  C  S  S  H  Q  T  T  R  G  C  P  Y  H  S  P  *  V  S  S  *  *  R  Q  H  G  *  *  Q  L  P  *  R  G  Y  *  S  K  A  Q  T  R  S  W  Q  V  C  C  S  S  P  S  L  *  Q   : G  Y  G  C  S  F  S  L  *  F  W  W  R  Q  G  *  K  F  G  S  S  *  I  Q  A  S  N  L  G  R  K  G  H  Q  L  S  I  Y  *  *  R  I  K  E  S  R  K  V  P  I  D  S  R  R  S  W  I  A  A  G  S  F  G  I  *  Q  Q  H  S  P  I  S  C  L  P  *   : G  L  W  R  G  T  Q  G  F  S  L  K  K  F  V  S  P  D  G  R  *  K  E  P  C  F  F  *  G  K  S  S  Y  Q  R  K  G  F  I  I  G  C  S  *  L  L  C  W  H  A  Q  *  Y  F  C  F  R  L  P  W  K  Y  A  Q  C  N   : G  R  T  E  N  I  Q  Q  Y  E  D  N  K  A  K  Y  G  I  V  R  P  A  F  L  E  Q  D  T  H  L  A  *  V  S  R  I  S  N  *  R  A  P  K  Q  T  R  P  N  Q  T  P  Q  T  Q  A  I  P  L  Y  I  S  C  S  *  L  Y  V  P  S  L  R  G  P  T  I  *  I  F  I  T  I  C  L  D  I  K  L  L  F  I  M  P  Y  I  I  V  I  N  K  M  P  P  L  L  L  T  C  R  G  *  F  I  F  M  C  H  H  V  E  I  L  R  *  G  W  K  E  Y  V  V  Q  Y  V  Y  Y  S  Y  E  E  C  I  Y  R  *  *  Y  S  S  L  D  R  Y  I  L  L  C  N  V  S  S  C  S  L  F  K  R  V  V  C  F  I  W  L  M  *  Q  R  L  I  I  L  S  N  G  S  *  W  N  *  F  H  Y  C  L </first_frame>
            <second_frame>  I  Y  T  S  Q  K  L  I  F  V  A  V  K  S  L  Q  C  G  S  C  K  L  A  V  C  L  F  G  F  I  I  C  I  D  F  W  Y  M  C  *  Y  Y  M  E  G  E  R  *  V  P  P  C  E  M  L  L  L  R  L  I  M  I  L  A  P  L  Y  S  S  Y  *  F  L  I  S  F  S  L  S  S  L  K  K  D  C  F  F  S  F  L  Y  S  L  L  S  S  F  *  E  F  L  G  T  P  F  S  L  F  C  F  I  F  S  L  G  G  *  A  K  Y  Q  K  Y  T  A  A  R  R  R  R  R  E  S  S  M  S  G  N  H  R  G  G  G  A  M  A  G  L  I  V  V  L  L  T  V  Y  F  T  T  F  S  Y  G  S  P  T  I  L  S  :  D  L  N  A  P  K  F  R  H  S  R  L  A  K  S  A  I  Q  R  Q  T  :  S  N  E  E  Q  S  R  L  W  T  P  L  E  H  Q  G  W  K  P  C  T  K  S  D  A  A  S   : I  P  E  K  S  E  G  Y  V  Q  V  F  L  D  G  G  L  N  Q  Q  R  M  G  :  I  C  D  A  V  V  V  A  K  I  L  N  A  T  L  V  I  P  Q  L  E  V  N  P  V  W  Q  D  S  S :   S  F  E  D  I  F  D  V  D  H  F  I  N  A  L  K  D  D  V  A  I  V  K  E  L  P  D  E  F  S  W  S  T  R  E  Y  Y  G  I  A  I  R  P  T  R  I  K  T  A  P  V  H  A  S  A  N  W  Y  L  E  N  V  S  P  V  L  Q  S :   Y  G  I  A  A  I  A  P  F  S  H  R  L  T  F  D  N  M  P  K  Y  L  Q  H  L  R  C  K  V  N  F  Q  A  L  A  F  V  P  H  I  R  Q  L  G  D  A  L  I  T  R  L  R  F  P  P  S  E  D  N  M  V  S  N  N  Y  L  R  E  V  T  D  L  K  P  K  Q  G  V  G  K  F  A  V  L  H  L  R  F  D  K  :  D  M  A  A  H  S  A  C  D  F  G  G  G  K  A  E  N  L  A  L  A  K  Y  R  Q  V  I  W  G  G  R  V  I  N  S  Q  F  T  D  E  E  L  R  S  Q  G  R  C  P  L  T  P  E  E  V  G  L  L  L  A  A  L  G  F  D  N  N  T  R  L  Y  L  A  S  H  K  :  V  Y  G  G  E  R  R  V  S  A  L  R  S  L  F  P  L  M  E  D  K  K  S  L  A  S  S  E  E  R  A  L  I  K  G  K  A  S  L  L  A  A  V  D  Y  Y  V  G  M  H  S  D  I  F  V  S  A  S  P  G  N  M  H  N  A  M  :  V  G  Q  R  T  Y  N  N  M  K  T  I  R  P  N  M  A  L  L  G  Q  L  F  L  N  K  T  L  T  W  P  E  F  Q  E  S  V  I  E  G  H  Q  N  R  Q  G  Q  I  R  L  R  K  P  K  Q  S  L  Y  T  Y  P  A  P  D  C  M  C  Q  A  *  E  G  L  P  Y  R  S  L  S  L  F  V  W  T  S  N  Y  C  L  L  C  L  I  L  *  L  *  I  R  C  H  P  F  C  *  L  V  G  G  N  L  Y  L  C  V  T  T  L  R  F  Y  G  R  G  G  R  N  M  L  Y  N  M  C  I  T  P  M  K  S  A  Y  T  D  S  S  I  L  V  L  T  D  I  F  Y  Y  V  M  S  V  L  V  V  Y  S  K  G  W  F  V  S  F  G  *  C  S  R  G  *  *  Y  Y  Q  M  A  A  S  G  I  D  F  I  I  A   </second_frame>
            <third_frame>   F  T  L  H  K  N  *  F  L  *  Q  *  N  H  F  S  V  A  A  V  S  L  L  F  A  C  L  V  L  L  Y  A  L  I  F  G  I  C  V  D  I  I  W  K  G  R  D  R  C  P  H  V  R  C  F  Y  *  G  S  *  *  Y  W  P  L  F  T  L  P  T  D  S  *  F  L  S  L  F  L  P  *  K  K  I  A  F  F  L  S  C  I  P  Y  F  Q  V  F  E  S  F  *  A  H  P  F  L  Y  F  A  L  Y  F  H  *  G  G  E  P  N  T  K  N  T  L  Q  Q  E  E  E  E  E  K  A  A  *  V  E  I  I  E  E  G  V  L  W  L  V  L  L  W  F  F  *  L  F  T  L  L  L  L  A  M  A  H  P  P  F  F  L :   I  *  M  L  Q  N  S  G  T  H  V  L  R  R  V  L  Y  N  A  K  L :   P  M  K  N  S  H  G  F  G  H  L  W  N  T  K  D  G  N  L  V  L  N  L  M  L  H  P  :  Y  L  K  N  L  R  D  T  F  K  C  S  L  M  V  D  *  I  N  R  G  W  G :   S  V  M  Q  L  S  L  P  K  F  *  M  P  H  L  *  S  L  S  W  K  *  I  L  F  G  K  I  Q   : A  H  S  R  I  S  L  M  W  I  T  S  S  M  H  *  K  T  T  *  L  *  S  K  S  C  L  M  N  S  L  G  A  H  E  N  I  M  A  *  L  S  D  L  Q  E  S  R  L  L  Q  F  M  L  Q  Q  I  G  I  *  R  M  C  H  L  Y  C  R   : V  M  E  L  L  P  *  L  H  F  L  T  D  *  H  L  T  T  C  P  S  T  S  N  T  Y  D  V  K  S  T  F  K  H  W  P  L  F  L  T  S  D  N  S  G  M  P  L  S  L  A  L  G  F  L  L  V  K  T  T  W  L  V  T  T  T  L  E  R  L  L  I  *  S  P  N  K  E  L  A  S  L  L  F  F  T  F  A  L  T  R :   I  W  L  L  I  Q  P  V  I  L  V  A  A  R  L  K  I  W  L  *  L  N  T  G  K  *  F  G  E  E  G  S  S  T  L  N  L  L  M  K  N  *  G  V  K  E  G  A  H  *  L  P  K  K  L  D  C  C  W  Q  L  W  D  L  T  T  T  L  A  Y  I  L  P  P  I  R :   F  M  A  G  N  A  G  F  Q  P  *  E  V  C  F  P  *  W  K  I  K  R  A  L  L  L  L  R  K  E  L  L  S  K  E  R  L  H  Y  W  L  Q  L  I  I  M  L  A  C  T  V  I  F  L  F  P  P  P  L  E  I  C  T  M  Q  W :   S  D  R  E  H  T  T  I  *  R  Q  *  G  Q  I  W  H  C  *  A  S  F  S  *  T  R  H  S  L  G  L  S  F  K  N  Q  *  L  K  G  T  K  T  D  K  A  K  S  D  S  A  N  P  S  N  P  S  I  H  I  L  L  L  I  V  C  A  K  L  E  R  A  Y  H  I  D  L  Y  H  Y  L  F  G  H  Q  I  I  V  Y  Y  A  L  Y  Y  S  Y  K  *  D  A  T  P  F  V  D  L  *  G  V  I  Y  I  Y  V  S  P  R  *  D  F  T  V  G  V  E  G  I  C  C  T  I  C  V  L  L  L  *  R  V  H  I  Q  I  V  V  F  *  S  *  Q  I  Y  F  T  M  *  C  Q  F  L  *  F  I  Q  K  G  G  L  F  H  L  V  D  V  A  E  V  D  N  I  I  K  W  Q  L  V  E  L  I  S  L  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73961" stop="73806"/>
                    <exon start="72054" stop="71992"/>
                    <exon start="71889" stop="71808"/>
                    <exon start="71655" stop="71588"/>
                    <exon start="71460" stop="71372"/>
                    <exon start="71292" stop="71089"/>
                    <exon start="70704" stop="70434"/>
                    <exon start="70198" stop="69971"/>
                    <exon start="69856" stop="69659"/>
                    <exon start="68911" stop="68702"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1566</number_coding_nucleotides>
                  <number_encoded_amino_acids>522</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKYQKYTAARRRRRESSMSGNHRGGGAMAGLIVVLLTVYFTTFSYGSPTILSDLNAPKFRHSRLAKSAIQRQTSNEEQSRLWTPLEHQGWKPCTKSDAASIPEKSEGYVQVFLDGGLNQQRMGICDAVVVAKILNATLVIPQLEVNPVWQDSSSFEDIFDVDHFINALKDDVAIVKELPDEFSWSTREYYGIAIRPTRIKTAPVHASANWYLENVSPVLQSYGIAAIAPFSHRLTFDNMPKYLQHLRCKVNFQALAFVPHIRQLGDALITRLRFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLALAKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLLAALGFDNNTRLYLASHKVYGGERRVSALRSLFPLMEDKKSLASSEERALIKGKASLLAAVDYYVGMHSDIFVSASPGNMHNAMVGQRTYNNMKTIRPNMALLGQLFLNKTLTWPEFQESVIEGHQNRQGQIRLRKPKQSLYTYPAPDCMCQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68596" stop="68393"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGGNLYLCVTTLRFYGRGGRNMLYNMCITPMKSAYTDSSILVLTDIFYYVMSVLVVYSKGWFVSFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="74194" e_stop="74159"/>
            <exon e_start="73969" e_stop="73806"/>
            <exon e_start="72054" e_stop="71992"/>
            <exon e_start="71889" e_stop="71808"/>
            <exon e_start="71658" e_stop="71588"/>
            <exon e_start="71460" e_stop="71372"/>
            <exon e_start="71292" e_stop="71089"/>
            <exon e_start="70704" e_stop="70434"/>
            <exon e_start="70198" e_stop="69971"/>
            <exon e_start="69856" e_stop="69659"/>
            <exon e_start="68911" e_stop="68304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74194" e_stop="74159" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74158" i_stop="73970" i_length="189"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73969" e_stop="73806" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72054" e_stop="71992" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71889" e_stop="71808" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71658" e_stop="71588" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.933" acc_prob="0.680">
            <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71460" e_stop="71372" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.986">
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          <description PGL_serial="11" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATATTATATGGAAGGGGAGAGATAGGTGCCCCCAT : GGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT : GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT : TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA : CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG : ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG : CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG : TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG : GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG : GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG : GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTAGTTCTGTTTTTCTATATTCAAACTCGA</gDNA_template>
            <first_frame> D  I  I  W  K  G  R  D  R  C  P  H  :  G  G  E  P  N  T  K  N  T  L  Q  Q  E  E  E  E  E  K  A  A  *  V  E  I  I  E  E  G  V  L  W  L  V  L  L  W  F  F  *  L  F  T  L  L  L  L  A  M  A  H  P  P  F  F  L :   I  *  M  L  Q  N  S  G  T  H  V  L  R  R  V  L  Y  N  A  K  L :   P  M  K  N  S  H  G  F  G  H  L  W  N  T  K  D  G  N  L  V  L  N  L  M  L  H  P  :  Q  Y  L  K  N  L  R  D  T  F  K  C  S  L  M  V  D  *  I  N  R  G  W  G :   S  V  M  Q  L  S  L  P  K  F  *  M  P  H  L  *  S  L  S  W  K  *  I  L  F  G  K  I  Q   : A  H  S  R  I  S  L  M  W  I  T  S  S  M  H  *  K  T  T  *  L  *  S  K  S  C  L  M  N  S  L  G  A  H  E  N  I  M  A  *  L  S  D  L  Q  E  S  R  L  L  Q  F  M  L  Q  Q  I  G  I  *  R  M  C  H  L  Y  C  R   : V  M  E  L  L  P  *  L  H  F  L  T  D  *  H  L  T  T  C  P  S  T  S  N  T  Y  D  V  K  S  T  F  K  H  W  P  L  F  L  T  S  D  N  S  G  M  P  L  S  L  A  L  G  F  L  L  V  K  T  T  W  L  V  T  T  T  L  E  R  L  L  I  *  S  P  N  K  E  L  A  S  L  L  F  F  T  F  A  L  T  R :   I  W  L  L  I  Q  P  V  I  L  V  A  A  R  L  K  I  W  L  *  L  N  T  G  K  *  F  G  E  E  G  S  S  T  L  N  L  L  M  K  N  *  G  V  K  E  G  A  H  *  L  P  K  K  L  D  C  C  W  Q  L  W  D  L  T  T  T  L  A  Y  I  L  P  P  I  R :   F  M  A  G  N  A  G  F  Q  P  *  E  V  C  F  P  *  W  K  I  K  R  A  L  L  L  L  R  K  E  L  L  S  K  E  R  L  H  Y  W  L  Q  L  I  I  M  L  A  C  T  V  I  F  L  F  P  P  P  L  E  I  C  T  M  Q  W :   S  D  R  E  H  T  T  I  *  R  Q  *  G  Q  I  W  H  C  *  A  S  F  S  *  T  R  H  S  L  G  L  S  F  K  N  Q  *  L  K  G  T  K  T  D  K  A  K  S  D  S  A  N  P  S  N  P  S  I  H  I  L  L  L  I  V  C  A  K  L  E  R  A  Y  H  I  D  L  Y  H  Y  L  F  G  H  Q  I  I  V  Y  Y  A  L  Y  Y  S  Y  K  *  D  A  T  P  F  V  D  L  *  G  V  I  Y  I  Y  V  S  P  R  *  D  F  T  V  G  V  E  G  I  C  C  T  I  C  V  L  L  L  *  R  V  H  I  Q  I  V  V  F  *  S  *  Q  I  Y  F  T  M  *  C  Q  F  L  *  F  I  Q  K  G  G  L  F  H  L  V  D  V  A  E  V  D  N  I  I  K  W  Q  L  V  E  L  I  S  L  L  P  S  S  V  F  L  Y  S  N  S  </first_frame>
            <second_frame>  I  L  Y  G  R  G  E  I  G  A  P  M :   G  V  S  Q  I  P  K  I  H  C  S  K  K  K  K  K  R  K  Q  H  E  W  K  S  *  R  R  G  C  Y  G  W  S  Y  C  G  S  F  D  C  L  L  Y  Y  F  *  L  W  L  T  H  H  S  F   : *  F  E  C  S  K  I  Q  A  L  T  S  C  E  E  C  Y  T  T  P  N   : F  Q  *  R  T  V  T  A  L  D  T  F  G  T  P  R  M  E  T  L  Y  *  I  *  C  C  I  H :   S  T  *  K  I  *  G  I  R  S  S  V  P  *  W  W  T  K  S  T  E  D  G   : D  L  *  C  S  C  R  C  Q  N  S  E  C  H  T  C  D  P  S  V  G  S  K  S  C  L  A  R  F  K  :  L  I  R  G  Y  L  *  C  G  S  L  H  Q  C  I  E  R  R  R  S  Y  S  Q  R  V  A  *  *  I  L  L  E  H  T  R  I  L  W  H  S  Y  P  T  Y  K  N  Q  D  C  S  S  S  C  F  S  K  L  V  F  R  E  C  V  T  C  T  A  E  :  L  W  N  C  C  H  S  S  I  F  S  P  T  D  I  *  Q  H  A  Q  V  P  P  T  P  T  M  *  S  Q  L  S  S  I  G  L  C  S  S  H  Q  T  T  R  G  C  P  Y  H  S  P  *  V  S  S  *  *  R  Q  H  G  *  *  Q  L  P  *  R  G  Y  *  S  K  A  Q  T  R  S  W  Q  V  C  C  S  S  P  S  L  *  Q   : G  Y  G  C  S  F  S  L  *  F  W  W  R  Q  G  *  K  F  G  S  S  *  I  Q  A  S  N  L  G  R  K  G  H  Q  L  S  I  Y  *  *  R  I  K  E  S  R  K  V  P  I  D  S  R  R  S  W  I  A  A  G  S  F  G  I  *  Q  Q  H  S  P  I  S  C  L  P  *   : G  L  W  R  G  T  Q  G  F  S  L  K  K  F  V  S  P  D  G  R  *  K  E  P  C  F  F  *  G  K  S  S  Y  Q  R  K  G  F  I  I  G  C  S  *  L  L  C  W  H  A  Q  *  Y  F  C  F  R  L  P  W  K  Y  A  Q  C  N   : G  R  T  E  N  I  Q  Q  Y  E  D  N  K  A  K  Y  G  I  V  R  P  A  F  L  E  Q  D  T  H  L  A  *  V  S  R  I  S  N  *  R  A  P  K  Q  T  R  P  N  Q  T  P  Q  T  Q  A  I  P  L  Y  I  S  C  S  *  L  Y  V  P  S  L  R  G  P  T  I  *  I  F  I  T  I  C  L  D  I  K  L  L  F  I  M  P  Y  I  I  V  I  N  K  M  P  P  L  L  L  T  C  R  G  *  F  I  F  M  C  H  H  V  E  I  L  R  *  G  W  K  E  Y  V  V  Q  Y  V  Y  Y  S  Y  E  E  C  I  Y  R  *  *  Y  S  S  L  D  R  Y  I  L  L  C  N  V  S  S  C  S  L  F  K  R  V  V  C  F  I  W  L  M  *  Q  R  L  I  I  L  S  N  G  S  *  W  N  *  F  H  Y  C  L  V  L  F  F  Y  I  Q  T  R </second_frame>
            <third_frame>   Y  Y  M  E  G  E  R  *  V  P  P   : W  G  *  A  K  Y  Q  K  Y  T  A  A  R  R  R  R  R  E  S  S  M  S  G  N  H  R  G  G  G  A  M  A  G  L  I  V  V  L  L  T  V  Y  F  T  T  F  S  Y  G  S  P  T  I  L  S  :  D  L  N  A  P  K  F  R  H  S  R  L  A  K  S  A  I  Q  R  Q  T  :  S  N  E  E  Q  S  R  L  W  T  P  L  E  H  Q  G  W  K  P  C  T  K  S  D  A  A  S   : T  V  P  E  K  S  E  G  Y  V  Q  V  F  L  D  G  G  L  N  Q  Q  R  M  G  :  I  C  D  A  V  V  V  A  K  I  L  N  A  T  L  V  I  P  Q  L  E  V  N  P  V  W  Q  D  S  S :   S  F  E  D  I  F  D  V  D  H  F  I  N  A  L  K  D  D  V  A  I  V  K  E  L  P  D  E  F  S  W  S  T  R  E  Y  Y  G  I  A  I  R  P  T  R  I  K  T  A  P  V  H  A  S  A  N  W  Y  L  E  N  V  S  P  V  L  Q  S :   Y  G  I  A  A  I  A  P  F  S  H  R  L  T  F  D  N  M  P  K  Y  L  Q  H  L  R  C  K  V  N  F  Q  A  L  A  F  V  P  H  I  R  Q  L  G  D  A  L  I  T  R  L  R  F  P  P  S  E  D  N  M  V  S  N  N  Y  L  R  E  V  T  D  L  K  P  K  Q  G  V  G  K  F  A  V  L  H  L  R  F  D  K  :  D  M  A  A  H  S  A  C  D  F  G  G  G  K  A  E  N  L  A  L  A  K  Y  R  Q  V  I  W  G  G  R  V  I  N  S  Q  F  T  D  E  E  L  R  S  Q  G  R  C  P  L  T  P  E  E  V  G  L  L  L  A  A  L  G  F  D  N  N  T  R  L  Y  L  A  S  H  K  :  V  Y  G  G  E  R  R  V  S  A  L  R  S  L  F  P  L  M  E  D  K  K  S  L  A  S  S  E  E  R  A  L  I  K  G  K  A  S  L  L  A  A  V  D  Y  Y  V  G  M  H  S  D  I  F  V  S  A  S  P  G  N  M  H  N  A  M  :  V  G  Q  R  T  Y  N  N  M  K  T  I  R  P  N  M  A  L  L  G  Q  L  F  L  N  K  T  L  T  W  P  E  F  Q  E  S  V  I  E  G  H  Q  N  R  Q  G  Q  I  R  L  R  K  P  K  Q  S  L  Y  T  Y  P  A  P  D  C  M  C  Q  A  *  E  G  L  P  Y  R  S  L  S  L  F  V  W  T  S  N  Y  C  L  L  C  L  I  L  *  L  *  I  R  C  H  P  F  C  *  L  V  G  G  N  L  Y  L  C  V  T  T  L  R  F  Y  G  R  G  G  R  N  M  L  Y  N  M  C  I  T  P  M  K  S  A  Y  T  D  S  S  I  L  V  L  T  D  I  F  Y  Y  V  M  S  V  L  V  V  Y  S  K  G  W  F  V  S  F  G  *  C  S  R  G  *  *  Y  Y  Q  M  A  A  S  G  I  D  F  I  I  A  *  F  C  F  S  I  F  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73961" stop="73806"/>
                    <exon start="72054" stop="71992"/>
                    <exon start="71889" stop="71808"/>
                    <exon start="71658" stop="71588"/>
                    <exon start="71460" stop="71372"/>
                    <exon start="71292" stop="71089"/>
                    <exon start="70704" stop="70434"/>
                    <exon start="70198" stop="69971"/>
                    <exon start="69856" stop="69659"/>
                    <exon start="68911" stop="68702"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1569</number_coding_nucleotides>
                  <number_encoded_amino_acids>523</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKYQKYTAARRRRRESSMSGNHRGGGAMAGLIVVLLTVYFTTFSYGSPTILSDLNAPKFRHSRLAKSAIQRQTSNEEQSRLWTPLEHQGWKPCTKSDAASTVPEKSEGYVQVFLDGGLNQQRMGICDAVVVAKILNATLVIPQLEVNPVWQDSSSFEDIFDVDHFINALKDDVAIVKELPDEFSWSTREYYGIAIRPTRIKTAPVHASANWYLENVSPVLQSYGIAAIAPFSHRLTFDNMPKYLQHLRCKVNFQALAFVPHIRQLGDALITRLRFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLALAKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLLAALGFDNNTRLYLASHKVYGGERRVSALRSLFPLMEDKKSLASSEERALIKGKASLLAAVDYYVGMHSDIFVSASPGNMHNAMVGQRTYNNMKTIRPNMALLGQLFLNKTLTWPEFQESVIEGHQNRQGQIRLRKPKQSLYTYPAPDCMCQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68596" stop="68393"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGGNLYLCVTTLRFYGRGGRNMLYNMCITPMKSAYTDSSILVLTDIFYYVMSVLVVYSKGWFVSFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="74341" e_stop="74255"/>
            <exon e_start="73936" e_stop="73806"/>
            <exon e_start="72054" e_stop="71992"/>
            <exon e_start="71889" e_stop="71808"/>
            <exon e_start="71658" e_stop="71588"/>
            <exon e_start="71460" e_stop="71372"/>
            <exon e_start="71292" e_stop="71089"/>
            <exon e_start="70704" e_stop="70434"/>
            <exon e_start="70198" e_stop="69971"/>
            <exon e_start="69856" e_stop="69659"/>
            <exon e_start="68911" e_stop="68331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74341" e_stop="74255" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74254" i_stop="73937" i_length="318"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73936" e_stop="73806" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73805" i_stop="72055" i_length="1751"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72054" e_stop="71992" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.982">
            <gDNA_intron_boundary i_start="71991" i_stop="71890" i_length="102"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71889" e_stop="71808" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="71807" i_stop="71659" i_length="149"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71658" e_stop="71588" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.933" acc_prob="0.680">
            <gDNA_intron_boundary i_start="71587" i_stop="71461" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71460" e_stop="71372" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.986">
            <gDNA_intron_boundary i_start="71371" i_stop="71293" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="71292" e_stop="71089" e_length="204"/>
          </exon>
          <intron i_serial="7" don_prob="0.976" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71088" i_stop="70705" i_length="384"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="70704" e_stop="70434" e_length="271"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.900">
            <gDNA_intron_boundary i_start="70433" i_stop="70199" i_length="235"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="70198" e_stop="69971" e_length="228"/>
          </exon>
          <intron i_serial="9" don_prob="0.967" acc_prob="0.983">
            <gDNA_intron_boundary i_start="69970" i_stop="69857" i_length="114"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="69856" e_stop="69659" e_length="198"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.971">
            <gDNA_intron_boundary i_start="69658" i_stop="68912" i_length="747"/>
          </intron>
          <exon e_serial="11" e_score="0.963">
            <gDNA_exon_boundary e_start="68911" e_stop="68331" e_length="581"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74341" stop="74255"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73846" stop="73806"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72054" stop="71992"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72054" stop="71992"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410262" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E573886" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332097" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311918" strand="+"/>
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          <PGS_line>
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              <exon start="71629" stop="71588"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71458" stop="71372"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576598" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71428" stop="71372"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471762" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71402" stop="71372"/>
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            <referenceDNA id="SGN-E588915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71401" stop="71372"/>
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            <referenceDNA id="SGN-E609518" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E703913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71382" stop="71372"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E299324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E260735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71240" stop="71089"/>
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            <referenceDNA id="SGN-E259639" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E707898" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E602085" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E710896" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E294819" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E282818" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E703686" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E725552" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E731420" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E365332" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E321161" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E370223" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E270625" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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            <referenceDNA id="SGN-E481744" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E698850" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E729029" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E597154" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E316547" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E479011" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E615471" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70078" stop="69971"/>
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            <referenceDNA id="SGN-E466386" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70019" stop="69971"/>
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            <referenceDNA id="SGN-E578319" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E370385" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E577812" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69806" stop="69659"/>
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            <referenceDNA id="SGN-E572793" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69803" stop="69659"/>
              <exon start="68911" stop="68796"/>
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            <referenceDNA id="SGN-E600381" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69744" stop="69659"/>
              <exon start="68911" stop="68596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299446" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69730" stop="69659"/>
              <exon start="68911" stop="68342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589807" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68911" stop="68516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224218" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68905" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580581" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68883" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606642" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68848" stop="68516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224069" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68837" stop="68403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712354" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68753" stop="68458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68729" stop="68342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68725" stop="68342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGATAAAGACAACCCACCCCCAAAGCATTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCT : CAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT : GATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTATACAACGCCAAACT : TCCAATGAAGAACAGTCACGGCTTTGGACACCTTTGGAACACCAAGGATGGAAACCTTGTACTAAATCTGATGCTGCATCCA : CAGTACCTGAAAAATCTGAGGGATACGTTCAAGTGTTCCTTGATGGTGGACTAAATCAACAGAGGATGGGG : ATCTGTGATGCAGTTGTCGTTGCCAAAATTCTGAATGCCACACTTGTGATCCCTCAGTTGGAAGTAAATCCTGTTTGGCAAGATTCAAG : CTCATTCGAGGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGACGACGTAGCTATAGTCAAAGAGTTGCCTGATGAATTCTCTTGGAGCACACGAGAATATTATGGCATAGCTATCCGACCTACAAGAATCAAGACTGCTCCAGTTCATGCTTCAGCAAATTGGTATTTAGAGAATGTGTCACCTGTACTGCAGAG : TTATGGAATTGCTGCCATAGCTCCATTTTCTCACCGACTGACATTTGACAACATGCCCAAGTACCTCCAACACCTACGATGTAAAGTCAACTTTCAAGCATTGGCCTTTGTTCCTCACATCAGACAACTCGGGGATGCCCTTATCACTCGCCTTAGGTTTCCTCCTAGTGAAGACAACATGGTTAGTAACAACTACCTTAGAGAGGTTACTGATCTAAAGCCCAAACAAGGAGTTGGCAAGTTTGCTGTTCTTCACCTTCGCTTTGACAAG : GATATGGCTGCTCATTCAGCCTGTGATTTTGGTGGCGGCAAGGCTGAAAATTTGGCTCTAGCTAAATACAGGCAAGTAATTTGGGGAGGAAGGGTCATCAACTCTCAATTTACTGATGAAGAATTAAGGAGTCAAGGAAGGTGCCCATTGACTCCCGAAGAAGTTGGATTGCTGCTGGCAGCTTTGGGATTTGACAACAACACTCGCCTATATCTTGCCTCCCATAAG : GTTTATGGCGGGGAACGCAGGGTTTCAGCCTTAAGAAGTTTGTTTCCCCTGATGGAAGATAAAAAGAGCCTTGCTTCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCATTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATTTTTGTTTCCGCCTCCCCTGGAAATATGCACAATGCAATG : GTCGGACAGAGAACATACAACAATATGAAGACAATAAGGCCAAATATGGCATTGTTAGGCCAGCTTTTCTTGAACAAGACACTCACTTGGCCTGAGTTTCAAGAATCAGTAATTGAAGGGCACCAAAACAGACAAGGCCAAATCAGACTCCGCAAACCCAAGCAATCCCTCTATACATATCCTGCTCCTGATTGTATGTGCCAAGCTTGAGAGGGCCTACCATATAGATCTTTATCACTATTTGTTTGGACATCAAATTATTGTTTATTATGCCTTATATTATAGTTATAAATAAGATGCCACCCCTTTTGTTGACTTGTAGGGGGTAATTTATATTTATGTGTCACCACGTTGAGATTTTACGGTAGGGGTGGAAGGAATATGTTGTACAATATGTGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTTGACAGATATATTTTACTATGTAATGTCAGTTCTTGTAGTTTATTCAAAAGGGTGGTTTGTTTCATTTGGTTGATGTAGCAGAGGTTGATAATATTATCAAATGGCAGCTAGTGGAATTGATTTCATTATTGCCTA</gDNA_template>
            <first_frame> N  *  *  R  Q  P  T  P  K  A  F  T  L  H  K  N  *  F  L  *  Q  *  N  H  F  S  V  A  A  :  Q  E  E  E  E  E  K  A  A  *  V  E  I  I  E  E  G  V  L  W  L  V  L  L  W  F  F  *  L  F  T  L  L  L  L  A  M  A  H  P  P  F  F  L :   I  *  M  L  Q  N  S  G  T  H  V  L  R  R  V  L  Y  N  A  K  L :   P  M  K  N  S  H  G  F  G  H  L  W  N  T  K  D  G  N  L  V  L  N  L  M  L  H  P  :  Q  Y  L  K  N  L  R  D  T  F  K  C  S  L  M  V  D  *  I  N  R  G  W  G :   S  V  M  Q  L  S  L  P  K  F  *  M  P  H  L  *  S  L  S  W  K  *  I  L  F  G  K  I  Q   : A  H  S  R  I  S  L  M  W  I  T  S  S  M  H  *  K  T  T  *  L  *  S  K  S  C  L  M  N  S  L  G  A  H  E  N  I  M  A  *  L  S  D  L  Q  E  S  R  L  L  Q  F  M  L  Q  Q  I  G  I  *  R  M  C  H  L  Y  C  R   : V  M  E  L  L  P  *  L  H  F  L  T  D  *  H  L  T  T  C  P  S  T  S  N  T  Y  D  V  K  S  T  F  K  H  W  P  L  F  L  T  S  D  N  S  G  M  P  L  S  L  A  L  G  F  L  L  V  K  T  T  W  L  V  T  T  T  L  E  R  L  L  I  *  S  P  N  K  E  L  A  S  L  L  F  F  T  F  A  L  T  R :   I  W  L  L  I  Q  P  V  I  L  V  A  A  R  L  K  I  W  L  *  L  N  T  G  K  *  F  G  E  E  G  S  S  T  L  N  L  L  M  K  N  *  G  V  K  E  G  A  H  *  L  P  K  K  L  D  C  C  W  Q  L  W  D  L  T  T  T  L  A  Y  I  L  P  P  I  R :   F  M  A  G  N  A  G  F  Q  P  *  E  V  C  F  P  *  W  K  I  K  R  A  L  L  L  L  R  K  E  L  L  S  K  E  R  L  H  Y  W  L  Q  L  I  I  M  L  A  C  T  V  I  F  L  F  P  P  P  L  E  I  C  T  M  Q  W :   S  D  R  E  H  T  T  I  *  R  Q  *  G  Q  I  W  H  C  *  A  S  F  S  *  T  R  H  S  L  G  L  S  F  K  N  Q  *  L  K  G  T  K  T  D  K  A  K  S  D  S  A  N  P  S  N  P  S  I  H  I  L  L  L  I  V  C  A  K  L  E  R  A  Y  H  I  D  L  Y  H  Y  L  F  G  H  Q  I  I  V  Y  Y  A  L  Y  Y  S  Y  K  *  D  A  T  P  F  V  D  L  *  G  V  I  Y  I  Y  V  S  P  R  *  D  F  T  V  G  V  E  G  I  C  C  T  I  C  V  L  L  L  *  R  V  H  I  Q  I  V  V  F  *  S  *  Q  I  Y  F  T  M  *  C  Q  F  L  *  F  I  Q  K  G  G  L  F  H  L  V  D  V  A  E  V  D  N  I  I  K  W  Q  L  V  E  L  I  S  L  L  P  </first_frame>
            <second_frame>  I  D  K  D  N  P  P  P  K  H  L  H  F  T  K  T  N  F  C  S  S  K  I  T  S  V  W  Q  L :   K  K  K  K  K  R  K  Q  H  E  W  K  S  *  R  R  G  C  Y  G  W  S  Y  C  G  S  F  D  C  L  L  Y  Y  F  *  L  W  L  T  H  H  S  F   : *  F  E  C  S  K  I  Q  A  L  T  S  C  E  E  C  Y  T  T  P  N   : F  Q  *  R  T  V  T  A  L  D  T  F  G  T  P  R  M  E  T  L  Y  *  I  *  C  C  I  H :   S  T  *  K  I  *  G  I  R  S  S  V  P  *  W  W  T  K  S  T  E  D  G   : D  L  *  C  S  C  R  C  Q  N  S  E  C  H  T  C  D  P  S  V  G  S  K  S  C  L  A  R  F  K  :  L  I  R  G  Y  L  *  C  G  S  L  H  Q  C  I  E  R  R  R  S  Y  S  Q  R  V  A  *  *  I  L  L  E  H  T  R  I  L  W  H  S  Y  P  T  Y  K  N  Q  D  C  S  S  S  C  F  S  K  L  V  F  R  E  C  V  T  C  T  A  E  :  L  W  N  C  C  H  S  S  I  F  S  P  T  D  I  *  Q  H  A  Q  V  P  P  T  P  T  M  *  S  Q  L  S  S  I  G  L  C  S  S  H  Q  T  T  R  G  C  P  Y  H  S  P  *  V  S  S  *  *  R  Q  H  G  *  *  Q  L  P  *  R  G  Y  *  S  K  A  Q  T  R  S  W  Q  V  C  C  S  S  P  S  L  *  Q   : G  Y  G  C  S  F  S  L  *  F  W  W  R  Q  G  *  K  F  G  S  S  *  I  Q  A  S  N  L  G  R  K  G  H  Q  L  S  I  Y  *  *  R  I  K  E  S  R  K  V  P  I  D  S  R  R  S  W  I  A  A  G  S  F  G  I  *  Q  Q  H  S  P  I  S  C  L  P  *   : G  L  W  R  G  T  Q  G  F  S  L  K  K  F  V  S  P  D  G  R  *  K  E  P  C  F  F  *  G  K  S  S  Y  Q  R  K  G  F  I  I  G  C  S  *  L  L  C  W  H  A  Q  *  Y  F  C  F  R  L  P  W  K  Y  A  Q  C  N   : G  R  T  E  N  I  Q  Q  Y  E  D  N  K  A  K  Y  G  I  V  R  P  A  F  L  E  Q  D  T  H  L  A  *  V  S  R  I  S  N  *  R  A  P  K  Q  T  R  P  N  Q  T  P  Q  T  Q  A  I  P  L  Y  I  S  C  S  *  L  Y  V  P  S  L  R  G  P  T  I  *  I  F  I  T  I  C  L  D  I  K  L  L  F  I  M  P  Y  I  I  V  I  N  K  M  P  P  L  L  L  T  C  R  G  *  F  I  F  M  C  H  H  V  E  I  L  R  *  G  W  K  E  Y  V  V  Q  Y  V  Y  Y  S  Y  E  E  C  I  Y  R  *  *  Y  S  S  L  D  R  Y  I  L  L  C  N  V  S  S  C  S  L  F  K  R  V  V  C  F  I  W  L  M  *  Q  R  L  I  I  L  S  N  G  S  *  W  N  *  F  H  Y  C  L </second_frame>
            <third_frame>   L  I  K  T  T  H  P  Q  S  I  Y  T  S  Q  K  L  I  F  V  A  V  K  S  L  Q  C  G  S   : S  R  R  R  R  R  E  S  S  M  S  G  N  H  R  G  G  G  A  M  A  G  L  I  V  V  L  L  T  V  Y  F  T  T  F  S  Y  G  S  P  T  I  L  S  :  D  L  N  A  P  K  F  R  H  S  R  L  A  K  S  A  I  Q  R  Q  T  :  S  N  E  E  Q  S  R  L  W  T  P  L  E  H  Q  G  W  K  P  C  T  K  S  D  A  A  S   : T  V  P  E  K  S  E  G  Y  V  Q  V  F  L  D  G  G  L  N  Q  Q  R  M  G  :  I  C  D  A  V  V  V  A  K  I  L  N  A  T  L  V  I  P  Q  L  E  V  N  P  V  W  Q  D  S  S :   S  F  E  D  I  F  D  V  D  H  F  I  N  A  L  K  D  D  V  A  I  V  K  E  L  P  D  E  F  S  W  S  T  R  E  Y  Y  G  I  A  I  R  P  T  R  I  K  T  A  P  V  H  A  S  A  N  W  Y  L  E  N  V  S  P  V  L  Q  S :   Y  G  I  A  A  I  A  P  F  S  H  R  L  T  F  D  N  M  P  K  Y  L  Q  H  L  R  C  K  V  N  F  Q  A  L  A  F  V  P  H  I  R  Q  L  G  D  A  L  I  T  R  L  R  F  P  P  S  E  D  N  M  V  S  N  N  Y  L  R  E  V  T  D  L  K  P  K  Q  G  V  G  K  F  A  V  L  H  L  R  F  D  K  :  D  M  A  A  H  S  A  C  D  F  G  G  G  K  A  E  N  L  A  L  A  K  Y  R  Q  V  I  W  G  G  R  V  I  N  S  Q  F  T  D  E  E  L  R  S  Q  G  R  C  P  L  T  P  E  E  V  G  L  L  L  A  A  L  G  F  D  N  N  T  R  L  Y  L  A  S  H  K  :  V  Y  G  G  E  R  R  V  S  A  L  R  S  L  F  P  L  M  E  D  K  K  S  L  A  S  S  E  E  R  A  L  I  K  G  K  A  S  L  L  A  A  V  D  Y  Y  V  G  M  H  S  D  I  F  V  S  A  S  P  G  N  M  H  N  A  M  :  V  G  Q  R  T  Y  N  N  M  K  T  I  R  P  N  M  A  L  L  G  Q  L  F  L  N  K  T  L  T  W  P  E  F  Q  E  S  V  I  E  G  H  Q  N  R  Q  G  Q  I  R  L  R  K  P  K  Q  S  L  Y  T  Y  P  A  P  D  C  M  C  Q  A  *  E  G  L  P  Y  R  S  L  S  L  F  V  W  T  S  N  Y  C  L  L  C  L  I  L  *  L  *  I  R  C  H  P  F  C  *  L  V  G  G  N  L  Y  L  C  V  T  T  L  R  F  Y  G  R  G  G  R  N  M  L  Y  N  M  C  I  T  P  M  K  S  A  Y  T  D  S  S  I  L  V  L  T  D  I  F  Y  Y  V  M  S  V  L  V  V  Y  S  K  G  W  F  V  S  F  G  *  C  S  R  G  *  *  Y  Y  Q  M  A  A  S  G  I  D  F  I  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74339" stop="74255"/>
                    <exon start="73936" stop="73806"/>
                    <exon start="72054" stop="71992"/>
                    <exon start="71889" stop="71808"/>
                    <exon start="71658" stop="71588"/>
                    <exon start="71460" stop="71372"/>
                    <exon start="71292" stop="71089"/>
                    <exon start="70704" stop="70434"/>
                    <exon start="70198" stop="69971"/>
                    <exon start="69856" stop="69659"/>
                    <exon start="68911" stop="68702"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1629</number_coding_nucleotides>
                  <number_encoded_amino_acids>543</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKTTHPQSIYTSQKLIFVAVKSLQCGSSRRRRRESSMSGNHRGGGAMAGLIVVLLTVYFTTFSYGSPTILSDLNAPKFRHSRLAKSAIQRQTSNEEQSRLWTPLEHQGWKPCTKSDAASTVPEKSEGYVQVFLDGGLNQQRMGICDAVVVAKILNATLVIPQLEVNPVWQDSSSFEDIFDVDHFINALKDDVAIVKELPDEFSWSTREYYGIAIRPTRIKTAPVHASANWYLENVSPVLQSYGIAAIAPFSHRLTFDNMPKYLQHLRCKVNFQALAFVPHIRQLGDALITRLRFPPSEDNMVSNNYLREVTDLKPKQGVGKFAVLHLRFDKDMAAHSACDFGGGKAENLALAKYRQVIWGGRVINSQFTDEELRSQGRCPLTPEEVGLLLAALGFDNNTRLYLASHKVYGGERRVSALRSLFPLMEDKKSLASSEERALIKGKASLLAAVDYYVGMHSDIFVSASPGNMHNAMVGQRTYNNMKTIRPNMALLGQLFLNKTLTWPEFQESVIEGHQNRQGQIRLRKPKQSLYTYPAPDCMCQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68596" stop="68393"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGGNLYLCVTTLRFYGRGGRNMLYNMCITPMKSAYTDSSILVLTDIFYYVMSVLVVYSKGWFVSFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="74311" e_stop="73806"/>
            <exon e_start="73668" e_stop="73657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="0.936"/>
          <exon-only e_score="0.333"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="74311" e_stop="73806" e_length="506"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73805" i_stop="73669" i_length="137"/>
          </intron>
          <exon e_serial="2" e_score="0.333">
            <gDNA_exon_boundary e_start="73668" e_stop="73657" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74311" stop="73809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74177" stop="73819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74176" stop="73806"/>
              <exon start="73668" stop="73657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74171" stop="73812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74097" stop="73806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485361" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTACACTTCACAAAAACTAATTTTTGTAGCAGTAAAATCACTTCAGTGTGGCAGCTGTAAGCTTGCTGTTTGCTTGTTTGGTTTTATTATATGCATTGATTTTTGGTATATGTGTTGATATTATATGGAAGGGGAGAGATAGGTGCCCCCATGTGAGATGCTTTTACTGAGGCTCATAATGATATTGGCCCCTCTTTACTCTTCCTACTGATTCTTGATTTCTTTCTCTCTTTCTTCCTTGAAAAAAGATTGCTTTTTTTCTTTCTTGTATTCCTTACTTTCAAGTTTTTGAGAGTTTTTAGGCACACCCTTTTCTTTATTTTGCTTTATATTTTCATTAGGGGGGTGAGCCAAATACCAAAAATACACTGCAGCAAGAAGAAGAAGAAGAGAAAGCAGCATGAGTGGAAATCATAGAGGAGGGGGTGCTATGGCTGGTCTTATTGTGGTTCTTTTGACTGTTTACTTTACTACTTTTAGCTATGGCTCACCCACCATTCTTTCT : TTGGAGAAAGAG</gDNA_template>
            <first_frame> F  T  L  H  K  N  *  F  L  *  Q  *  N  H  F  S  V  A  A  V  S  L  L  F  A  C  L  V  L  L  Y  A  L  I  F  G  I  C  V  D  I  I  W  K  G  R  D  R  C  P  H  V  R  C  F  Y  *  G  S  *  *  Y  W  P  L  F  T  L  P  T  D  S  *  F  L  S  L  F  L  P  *  K  K  I  A  F  F  L  S  C  I  P  Y  F  Q  V  F  E  S  F  *  A  H  P  F  L  Y  F  A  L  Y  F  H  *  G  G  E  P  N  T  K  N  T  L  Q  Q  E  E  E  E  E  K  A  A  *  V  E  I  I  E  E  G  V  L  W  L  V  L  L  W  F  F  *  L  F  T  L  L  L  L  A  M  A  H  P  P  F  F  L :   W  R  K   </first_frame>
            <second_frame>  L  H  F  T  K  T  N  F  C  S  S  K  I  T  S  V  W  Q  L  *  A  C  C  L  L  V  W  F  Y  Y  M  H  *  F  L  V  Y  V  L  I  L  Y  G  R  G  E  I  G  A  P  M  *  D  A  F  T  E  A  H  N  D  I  G  P  S  L  L  F  L  L  I  L  D  F  F  L  S  F  F  L  E  K  R  L  L  F  F  F  L  V  F  L  T  F  K  F  L  R  V  F  R  H  T  L  F  F  I  L  L  Y  I  F  I  R  G  V  S  Q  I  P  K  I  H  C  S  K  K  K  K  K  R  K  Q  H  E  W  K  S  *  R  R  G  C  Y  G  W  S  Y  C  G  S  F  D  C  L  L  Y  Y  F  *  L  W  L  T  H  H  S  F   : F  G  E  R  </second_frame>
            <third_frame>   Y  T  S  Q  K  L  I  F  V  A  V  K  S  L  Q  C  G  S  C  K  L  A  V  C  L  F  G  F  I  I  C  I  D  F  W  Y  M  C  *  Y  Y  M  E  G  E  R  *  V  P  P  C  E  M  L  L  L  R  L  I  M  I  L  A  P  L  Y  S  S  Y  *  F  L  I  S  F  S  L  S  S  L  K  K  D  C  F  F  S  F  L  Y  S  L  L  S  S  F  *  E  F  L  G  T  P  F  S  L  F  C  F  I  F  S  L  G  G  *  A  K  Y  Q  K  Y  T  A  A  R  R  R  R  R  E  S  S  M  S  G  N  H  R  G  G  G  A  M  A  G  L  I  V  V  L  L  T  V  Y  F  T  T  F  S  Y  G  S  P  T  I  L  S  :  L  E  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74154" stop="73894"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAFTEAHNDIGPSLLFLLILDFFLSFFLEKRLLFFFLVFLTFKFLRVFRHTLFFILLYIFIRGVSQIPKIHCSKKKKKRKQHEWKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="68444" PGL_stop="68877"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68444" e_stop="68877"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="68444" e_stop="68877" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68444" stop="68861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68532" stop="68877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268575" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACATAGTAAAATATATCTGTCAAGACTAGAATACTACTATCTGTATATGCACTCTTCATAGGAGTAATACACATATTGTACAACATATTCCTTCCACCCCTACCGTAAAATCTCAACGTGGTGACACATAAATATAAATTACCCCCTACAAGTCAACAAAAGGGGTGGCATCTTATTTATAACTATAATATAAGGCATAATAAACAATAATTTGATGTCCAAACAAATAGTGATAAAGATCTATATGGTAGGCCCTCTCAAGCTTGGCACATACAATCAGGAGCAGGATATGTATAGAGGGATTGCTTGGGTTTGCGGAGTCTGATTTGGCCTTGTCTGTTTTGGTGCCCTTCAATTACTGATTCTTGAAACTCAGGCCAAGTGAGTGTCTTGTTCAAGAAAAGCTGGCCTAACAATGCCATATTTGGCCTTA</gDNA_template>
            <first_frame> Y  I  V  K  Y  I  C  Q  D  *  N  T  T  I  C  I  C  T  L  H  R  S  N  T  H  I  V  Q  H  I  P  S  T  P  T  V  K  S  Q  R  G  D  T  *  I  *  I  T  P  Y  K  S  T  K  G  V  A  S  Y  L  *  L  *  Y  K  A  *  *  T  I  I  *  C  P  N  K  *  *  *  R  S  I  W  *  A  L  S  S  L  A  H  T  I  R  S  R  I  C  I  E  G  L  L  G  F  A  E  S  D  L  A  L  S  V  L  V  P  F  N  Y  *  F  L  K  L  R  P  S  E  C  L  V  Q  E  K  L  A  *  Q  C  H  I  W  P   </first_frame>
            <second_frame>  T  *  *  N  I  S  V  K  T  R  I  L  L  S  V  Y  A  L  F  I  G  V  I  H  I  L  Y  N  I  F  L  P  P  L  P  *  N  L  N  V  V  T  H  K  Y  K  L  P  P  T  S  Q  Q  K  G  W  H  L  I  Y  N  Y  N  I  R  H  N  K  Q  *  F  D  V  Q  T  N  S  D  K  D  L  Y  G  R  P  S  Q  A  W  H  I  Q  S  G  A  G  Y  V  *  R  D  C  L  G  L  R  S  L  I  W  P  C  L  F  W  C  P  S  I  T  D  S  *  N  S  G  Q  V  S  V  L  F  K  K  S  W  P  N  N  A  I  F  G  L  </second_frame>
            <third_frame>   H  S  K  I  Y  L  S  R  L  E  Y  Y  Y  L  Y  M  H  S  S  *  E  *  Y  T  Y  C  T  T  Y  S  F  H  P  Y  R  K  I  S  T  W  *  H  I  N  I  N  Y  P  L  Q  V  N  K  R  G  G  I  L  F  I  T  I  I  *  G  I  I  N  N  N  L  M  S  K  Q  I  V  I  K  I  Y  M  V  G  P  L  K  L  G  T  Y  N  Q  E  Q  D  M  Y  R  G  I  A  W  V  C  G  V  *  F  G  L  V  C  F  G  A  L  Q  L  L  I  L  E  T  Q  A  K  *  V  S  C  S  R  K  A  G  L  T  M  P  Y  L  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0107K14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="85006" PGL_stop="83211"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85006" e_stop="83211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="85006" e_stop="83211" e_length="1796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85006" stop="84390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84926" stop="84410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84926" stop="84525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84926" stop="84528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84918" stop="84234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84901" stop="84055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84901" stop="84234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84853" stop="84292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84276" stop="83391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83528" stop="83211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83528" stop="83211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462389" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAAAACATTGATCACCAAATTTCACTTTCTTAATATTAAATTTCATCCCAAATCTACCTTCTCCTTCTCCATCTTAGCTTATTTTCACTGATTTAGTTGCTTAGTTCTACTACAATCATAAAGTGAAGCAGCCAGCATCGAAAATCTGTTTGTTTTGAGCAAAAAATGGGATCTGTTTCTTTGAAAATAGGTGATGGAACTGCTAGATTCAAGAAAGCTACATATTGTTCTTCAGTTCTAAATCTACTTATGCTTTTCTCTGTTGTTACAACTAATCTTTTTGCTTTATATGCTTTTACATCCTCACCCAAAAACCCCCATCATCATCTTCTTCTCCCACATACTCACAAGAACATATCTTTAATCTCAGAACAAGTTTCTTTAATTCTAAGACAGATTGATTCTTCACAAAAAAAACTTGCCCAAATGGAAAAAGAGCTTTTAGGCTATGAAAGTTTTGATCTTTCTAGTCCCAAAGTTCCAAATGAAGTGAGAAATTTCTTGCAACCCCATTTGCTGCCTTTGGGTAAAGATTCAAGAACTGGGATTACTGAAATGGTAGCTTCTATTGGACATTCTTGTGTGAAATCTTTAGATTTGCTTTCTCAGTTTATGAGTTATAAGGTTAATGGTCTTTGTCCTGATGATTGGAGTCTTGGGCAGAAGCTGATTCTTAGTGGCTGTGAGCCTTTGCCAAGAAGGAGGTGTTTTGCTAAGACAATACCTAAGGTTGGTTTACTTAAATTACCTGATTCATTTTGGGGAAATTATAGTGAAAAGATTTATAGTTGGAGTGGTCTTGGTTGTAAGAATGTAGCTTGTTTAAATGTTAAGAAATTGAATAGAGATTGTGCTGGTTGTTTTGATGTTGTAAGTAGTGGGGGGTATGAGAAGCAAAGATATGTTAAGGGTAGAGGGAAAAATGATTTCTTGATTGATGATGTATTGGGAATGCTGGGAAATGGTGGGGGAATTAGAATTGGATTTGATATTGGTGGTGGATCTGGTACATTTGCTGTTAGAATGGCTGAAAGGAATGTGACTATAGTTACTGCTACGTTGAATGTCGATGCACCATTTAACGAGTTCATTGCTGCACGGGGTGTATTCCCGTTGTATTTGAGTTTAGATCATCGGTTTCCCTTTCATGATAATGTGTTTGATTTGGTACATGTGGGAAATGTATTGGATGTGAGCGGACGTCCTGAGAAGTTAGAGTTTTTAGTGTTTGATATTGATAGAGTTTTGAGGGCTGGAGGGTTGTTTTGGTTGGATAACTTTCTTTGTTCAAATGAAGACAAGAAAACTGCATTAACGAGGCTGATCGAACGTTTTGGGTACAAAAAGCTTAAATGGGTTGTTGGTGAGAAGATCAATGGGTCGGGAAAATCTGAGGTTTATTTGTCTGCTGTTCTACAGAAACCAGTAAGAGTTTGATCGTATCGCGGGGTTTCTCATAGAAAAGCTGTGCATGTTCATTATTGACATAGAATAAGTGAACGTATTCGTCTTCTTTTACACAACTGCTAACCAGCATCATAGGAGGGAGGCGGGTTCGGCTTTGTGGCAGGTATTATATGTCTACGATCTCTAAGATTATTCACTTATCTTTGGCATTGAACTAGATATTGCTGGCATTGGCATGAGCCTTTTGTCTGTGTCAATTGTTAATTTGAGTTTAGGAAGAAAAGAAAACGAAGCTTTTTTCCAAATTTCATTGTATTGTTGGGATATAAGTTAAAATCCTCTGATATTGTCCCCTTGATTAAAGCATTTGGTTGATGCCTTTTCGAC</gDNA_template>
            <first_frame> D  K  T  L  I  T  K  F  H  F  L  N  I  K  F  H  P  K  S  T  F  S  F  S  I  L  A  Y  F  H  *  F  S  C  L  V  L  L  Q  S  *  S  E  A  A  S  I  E  N  L  F  V  L  S  K  K  W  D  L  F  L  *  K  *  V  M  E  L  L  D  S  R  K  L  H  I  V  L  Q  F  *  I  Y  L  C  F  S  L  L  L  Q  L  I  F  L  L  Y  M  L  L  H  P  H  P  K  T  P  I  I  I  F  F  S  H  I  L  T  R  T  Y  L  *  S  Q  N  K  F  L  *  F  *  D  R  L  I  L  H  K  K  N  L  P  K  W  K  K  S  F  *  A  M  K  V  L  I  F  L  V  P  K  F  Q  M  K  *  E  I  S  C  N  P  I  C  C  L  W  V  K  I  Q  E  L  G  L  L  K  W  *  L  L  L  D  I  L  V  *  N  L  *  I  C  F  L  S  L  *  V  I  R  L  M  V  F  V  L  M  I  G  V  L  G  R  S  *  F  L  V  A  V  S  L  C  Q  E  G  G  V  L  L  R  Q  Y  L  R  L  V  Y  L  N  Y  L  I  H  F  G  E  I  I  V  K  R  F  I  V  G  V  V  L  V  V  R  M  *  L  V  *  M  L  R  N  *  I  E  I  V  L  V  V  L  M  L  *  V  V  G  G  M  R  S  K  D  M  L  R  V  E  G  K  M  I  S  *  L  M  M  Y  W  E  C  W  E  M  V  G  E  L  E  L  D  L  I  L  V  V  D  L  V  H  L  L  L  E  W  L  K  G  M  *  L  *  L  L  L  R  *  M  S  M  H  H  L  T  S  S  L  L  H  G  V  Y  S  R  C  I  *  V  *  I  I  G  F  P  F  M  I  M  C  L  I  W  Y  M  W  E  M  Y  W  M  *  A  D  V  L  R  S  *  S  F  *  C  L  I  L  I  E  F  *  G  L  E  G  C  F  G  W  I  T  F  F  V  Q  M  K  T  R  K  L  H  *  R  G  *  S  N  V  L  G  T  K  S  L  N  G  L  L  V  R  R  S  M  G  R  E  N  L  R  F  I  C  L  L  F  Y  R  N  Q  *  E  F  D  R  I  A  G  F  L  I  E  K  L  C  M  F  I  I  D  I  E  *  V  N  V  F  V  F  F  Y  T  T  A  N  Q  H  H  R  R  E  A  G  S  A  L  W  Q  V  L  Y  V  Y  D  L  *  D  Y  S  L  I  F  G  I  E  L  D  I  A  G  I  G  M  S  L  L  S  V  S  I  V  N  L  S  L  G  R  K  E  N  E  A  F  F  Q  I  S  L  Y  C  W  D  I  S  *  N  P  L  I  L  S  P  *  L  K  H  L  V  D  A  F  S   </first_frame>
            <second_frame>  T  K  H  *  S  P  N  F  T  F  L  I  L  N  F  I  P  N  L  P  S  P  S  P  S  *  L  I  F  T  D  L  V  A  *  F  Y  Y  N  H  K  V  K  Q  P  A  S  K  I  C  L  F  *  A  K  N  G  I  C  F  F  E  N  R  *  W  N  C  *  I  Q  E  S  Y  I  L  F  F  S  S  K  S  T  Y  A  F  L  C  C  Y  N  *  S  F  C  F  I  C  F  Y  I  L  T  Q  K  P  P  S  S  S  S  S  P  T  Y  S  Q  E  H  I  F  N  L  R  T  S  F  F  N  S  K  T  D  *  F  F  T  K  K  T  C  P  N  G  K  R  A  F  R  L  *  K  F  *  S  F  *  S  Q  S  S  K  *  S  E  K  F  L  A  T  P  F  A  A  F  G  *  R  F  K  N  W  D  Y  *  N  G  S  F  Y  W  T  F  L  C  E  I  F  R  F  A  F  S  V  Y  E  L  *  G  *  W  S  L  S  *  *  L  E  S  W  A  E  A  D  S  *  W  L  *  A  F  A  K  K  E  V  F  C  *  D  N  T  *  G  W  F  T  *  I  T  *  F  I  L  G  K  L  *  *  K  D  L  *  L  E  W  S  W  L  *  E  C  S  L  F  K  C  *  E  I  E  *  R  L  C  W  L  F  *  C  C  K  *  W  G  V  *  E  A  K  I  C  *  G  *  R  E  K  *  F  L  D  *  *  C  I  G  N  A  G  K  W  W  G  N  *  N  W  I  *  Y  W  W  W  I  W  Y  I  C  C  *  N  G  *  K  E  C  D  Y  S  Y  C  Y  V  E  C  R  C  T  I  *  R  V  H  C  C  T  G  C  I  P  V  V  F  E  F  R  S  S  V  S  L  S  *  *  C  V  *  F  G  T  C  G  K  C  I  G  C  E  R  T  S  *  E  V  R  V  F  S  V  *  Y  *  *  S  F  E  G  W  R  V  V  L  V  G  *  L  S  L  F  K  *  R  Q  E  N  C  I  N  E  A  D  R  T  F  W  V  Q  K  A  *  M  G  C  W  *  E  D  Q  W  V  G  K  I  *  G  L  F  V  C  C  S  T  E  T  S  K  S  L  I  V  S  R  G  F  S  *  K  S  C  A  C  S  L  L  T  *  N  K  *  T  Y  S  S  S  F  T  Q  L  L  T  S  I  I  G  G  R  R  V  R  L  C  G  R  Y  Y  M  S  T  I  S  K  I  I  H  L  S  L  A  L  N  *  I  L  L  A  L  A  *  A  F  C  L  C  Q  L  L  I  *  V  *  E  E  K  K  T  K  L  F  S  K  F  H  C  I  V  G  I  *  V  K  I  L  *  Y  C  P  L  D  *  S  I  W  L  M  P  F  R  </second_frame>
            <third_frame>   Q  N  I  D  H  Q  I  S  L  S  *  Y  *  I  S  S  Q  I  Y  L  L  L  L  H  L  S  L  F  S  L  I  *  L  L  S  S  T  T  I  I  K  *  S  S  Q  H  R  K  S  V  C  F  E  Q  K  M  G  S  V  S  L  K  I  G  D  G  T  A  R  F  K  K  A  T  Y  C  S  S  V  L  N  L  L  M  L  F  S  V  V  T  T  N  L  F  A  L  Y  A  F  T  S  S  P  K  N  P  H  H  H  L  L  L  P  H  T  H  K  N  I  S  L  I  S  E  Q  V  S  L  I  L  R  Q  I  D  S  S  Q  K  K  L  A  Q  M  E  K  E  L  L  G  Y  E  S  F  D  L  S  S  P  K  V  P  N  E  V  R  N  F  L  Q  P  H  L  L  P  L  G  K  D  S  R  T  G  I  T  E  M  V  A  S  I  G  H  S  C  V  K  S  L  D  L  L  S  Q  F  M  S  Y  K  V  N  G  L  C  P  D  D  W  S  L  G  Q  K  L  I  L  S  G  C  E  P  L  P  R  R  R  C  F  A  K  T  I  P  K  V  G  L  L  K  L  P  D  S  F  W  G  N  Y  S  E  K  I  Y  S  W  S  G  L  G  C  K  N  V  A  C  L  N  V  K  K  L  N  R  D  C  A  G  C  F  D  V  V  S  S  G  G  Y  E  K  Q  R  Y  V  K  G  R  G  K  N  D  F  L  I  D  D  V  L  G  M  L  G  N  G  G  G  I  R  I  G  F  D  I  G  G  G  S  G  T  F  A  V  R  M  A  E  R  N  V  T  I  V  T  A  T  L  N  V  D  A  P  F  N  E  F  I  A  A  R  G  V  F  P  L  Y  L  S  L  D  H  R  F  P  F  H  D  N  V  F  D  L  V  H  V  G  N  V  L  D  V  S  G  R  P  E  K  L  E  F  L  V  F  D  I  D  R  V  L  R  A  G  G  L  F  W  L  D  N  F  L  C  S  N  E  D  K  K  T  A  L  T  R  L  I  E  R  F  G  Y  K  K  L  K  W  V  V  G  E  K  I  N  G  S  G  K  S  E  V  Y  L  S  A  V  L  Q  K  P  V  R  V  *  S  Y  R  G  V  S  H  R  K  A  V  H  V  H  Y  *  H  R  I  S  E  R  I  R  L  L  L  H  N  C  *  P  A  S  *  E  G  G  G  F  G  F  V  A  G  I  I  C  L  R  S  L  R  L  F  T  Y  L  W  H  *  T  R  Y  C  W  H  W  H  E  P  F  V  C  V  N  C  *  F  E  F  R  K  K  R  K  R  S  F  F  P  N  F  I  V  L  L  G  Y  K  L  K  S  S  D  I  V  P  L  I  K  A  F  G  *  C  L  F  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84878" stop="83568"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1308</number_coding_nucleotides>
                  <number_encoded_amino_acids>436</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSQHRKSVCFEQKMGSVSLKIGDGTARFKKATYCSSVLNLLMLFSVVTTNLFALYAFTSSPKNPHHHLLLPHTHKNISLISEQVSLILRQIDSSQKKLAQMEKELLGYESFDLSSPKVPNEVRNFLQPHLLPLGKDSRTGITEMVASIGHSCVKSLDLLSQFMSYKVNGLCPDDWSLGQKLILSGCEPLPRRRCFAKTIPKVGLLKLPDSFWGNYSEKIYSWSGLGCKNVACLNVKKLNRDCAGCFDVVSSGGYEKQRYVKGRGKNDFLIDDVLGMLGNGGGIRIGFDIGGGSGTFAVRMAERNVTIVTATLNVDAPFNEFIAARGVFPLYLSLDHRFPFHDNVFDLVHVGNVLDVSGRPEKLEFLVFDIDRVLRAGGLFWLDNFLCSNEDKKTALTRLIERFGYKKLKWVVGEKINGSGKSEVYLSAVLQKPVRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="85359" PGL_stop="86121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85359" e_stop="86121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="85359" e_stop="86121" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85359" stop="86121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACACGTTATCAGCACGAAGTTGCTACTTGCAAAGGTATTATATAAATATTTTTATTTGATTCACATATTCTCTCATAATTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCATTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCTGCTAAAGGTCTTGATGCCACTATTACTCAGGGAAATGAAGCATCGAGTCAAGATAAGGCGAAAGCTATGATTTTCCTTCGTCATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACGGTGAAAGATCCACTTGAATTGTGGACTGATTTAAAGGGGAGATATGACCACCTAAAGGCAACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTACGATTTCAAGATTTTAAGACCGTGATTGAATACAACTCTGCTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGAGAGACTATAAAAGATGAGGACATGTTGGAAAAGACACTTACTACTTTCCATGCCTCAAATGTGATATTGCAGCAGCAATATCGTGAAAAGGGTTTTCAGAAATATTTTGAACTAATCTCATGTCTGTTGGTGGCTGAGCAACATAATGCTCTTTTAATGAAAAATCATGAAGCTCGTCCCACTGGAGCTGCTCCATTACCGGAGGCAAATGTGGTGGAAGCACGTGATCAATCTAAAGTAAAAAGAGATGATCATGGGGGATATAATAATGCACGGGGACGTGGCAA</gDNA_template>
            <first_frame> N  T  L  S  A  R  S  C  Y  L  Q  R  Y  Y  I  N  I  F  I  *  F  T  Y  S  L  I  I  S  L  C  R  I  Y  P  N  L  S  L  W  H  *  I  F  L  E  R  I  I  F  H  G  Y  S  M  L  R  F  T  W  L  L  K  V  L  M  P  L  L  L  R  E  M  K  H  R  V  K  I  R  R  K  L  *  F  S  F  V  I  I  L  M  R  A  *  R  L  N  I  *  R  *  K  I  H  L  N  C  G  L  I  *  R  G  D  M  T  T  *  R  Q  Q  C  C  Q  E  L  V  M  S  G  C  I  Y  D  F  K  I  L  R  P  *  L  N  T  T  L  L  Y  S  G  *  P  P  S  *  N  Y  V  E  R  L  *  K  M  R  T  C  W  K  R  H  L  L  L  S  M  P  Q  M  *  Y  C  S  S  N  I  V  K  R  V  F  R  N  I  L  N  *  S  H  V  C  W  W  L  S  N  I  M  L  F  *  *  K  I  M  K  L  V  P  L  E  L  L  H  Y  R  R  Q  M  W  W  K  H  V  I  N  L  K  *  K  E  M  I  M  G  D  I  I  M  H  G  D  V  A  </first_frame>
            <second_frame>  T  R  Y  Q  H  E  V  A  T  C  K  G  I  I  *  I  F  L  F  D  S  H  I  L  S  *  F  H  Y  V  E  F  I  Q  T  *  V  C  G  I  R  Y  F  W  K  E  L  S  F  M  G  T  R  C  *  D  S  L  G  C  *  R  S  *  C  H  Y  Y  S  G  K  *  S  I  E  S  R  *  G  E  S  Y  D  F  P  S  S  S  S  *  *  G  P  E  D  *  I  S  D  G  E  R  S  T  *  I  V  D  *  F  K  G  E  I  *  P  P  K  G  N  S  V  A  K  S  S  L  *  V  D  A  F  T  I  S  R  F  *  D  R  D  *  I  Q  L  C  C  I  Q  D  N  L  P  V  E  I  M  W  R  D  Y  K  R  *  G  H  V  G  K  D  T  Y  Y  F  P  C  L  K  C  D  I  A  A  A  I  S  *  K  G  F  S  E  I  F  *  T  N  L  M  S  V  G  G  *  A  T  *  C  S  F  N  E  K  S  *  S  S  S  H  W  S  C  S  I  T  G  G  K  C  G  G  S  T  *  S  I  *  S  K  K  R  *  S  W  G  I  *  *  C  T  G  T  W  Q </second_frame>
            <third_frame>   H  V  I  S  T  K  L  L  L  A  K  V  L  Y  K  Y  F  Y  L  I  H  I  F  S  H  N  F  I  M  S  N  L  S  K  L  E  F  V  A  L  D  I  S  G  K  N  Y  L  S  W  V  L  D  A  E  I  H  L  A  A  K  G  L  D  A  T  I  T  Q  G  N  E  A  S  S  Q  D  K  A  K  A  M  I  F  L  R  H  H  L  D  E  G  L  K  I  E  Y  L  T  V  K  D  P  L  E  L  W  T  D  L  K  G  R  Y  D  H  L  K  A  T  V  L  P  R  A  R  Y  E  W  M  H  L  R  F  Q  D  F  K  T  V  I  E  Y  N  S  A  V  F  R  I  T  S  Q  L  K  L  C  G  E  T  I  K  D  E  D  M  L  E  K  T  L  T  T  F  H  A  S  N  V  I  L  Q  Q  Q  Y  R  E  K  G  F  Q  K  Y  F  E  L  I  S  C  L  L  V  A  E  Q  H  N  A  L  L  M  K  N  H  E  A  R  P  T  G  A  A  P  L  P  E  A  N  V  V  E  A  R  D  Q  S  K  V  K  R  D  D  H  G  G  Y  N  N  A  R  G  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85361" stop="86119"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVISTKLLLAKVLYKYFYLIHIFSHNFIMSNLSKLEFVALDISGKNYLSWVLDAEIHLAAKGLDATITQGNEASSQDKAKAMIFLRHHLDEGLKIEYLTVKDPLELWTDLKGRYDHLKATVLPRARYEWMHLRFQDFKTVIEYNSAVFRITSQLKLCGETIKDEDMLEKTLTTFHASNVILQQQYREKGFQKYFELISCLLVAEQHNALLMKNHEARPTGAAPLPEANVVEARDQSKVKRDDHGGYNNARGRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="86655" PGL_stop="87200"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86655" e_stop="87200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="86655" e_stop="87200" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86655" stop="87200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86765" stop="87133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAATGCTACAACGCATACAATATTAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTCGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGACACACCTT</gDNA_template>
            <first_frame> K  S  P  V  V  S  W  I  Q  D  E  *  W  R  C  M  P  S  *  *  C  Y  N  A  Y  N  I  K  R  K  E  I  L  F  *  F  G  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  G  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  *  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  K  Q  K  V  Y  *  F  *  *  F  Y  H  L  A  *  P  V  G  P  S  W  I  *  Y  D  A  Q  N  H  *  E  F  T  W  T  H  L </first_frame>
            <second_frame>  N  P  Q  L  S  V  G  F  K  M  S  N  G  D  V  C  L  L  D  N  A  T  T  H  T  I  L  K  E  K  K  Y  F  S  N  L  V  M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  L  P  A  F  S  S  G  S  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  K  R  F  T  N  F  N  D  F  I  I  W  H  D  R  L  G  H  P  G  F  N  M  M  R  K  I  I  E  N  S  H  G  H  T   </second_frame>
            <third_frame>   I  P  S  C  Q  L  D  S  R  *  V  M  E  M  Y  A  F  L  I  M  L  Q  R  I  Q  Y  *  K  K  R  N  T  F  L  I  W  L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  L  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  R  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  T  K  G  L  L  I  L  M  I  L  S  F  G  M  T  G  W  A  I  L  D  L  I  *  C  A  K  S  L  R  I  H  M  D  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86656" stop="87198"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPQLSVGFKMSNGDVCLLDNATTHTILKEKKYFSNLVMKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETANEGKVEYLYITTINVEKKIVHEKLPAFSSGSYYTSISTVESHAVVNKRFTNFNDFIIWHDRLGHPGFNMMRKIIENSHGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="88511" PGL_stop="90218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88511" e_stop="90218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="88511" e_stop="90218" e_length="1708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88511" stop="89221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89087" stop="89724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89127" stop="89754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89127" stop="89702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89177" stop="89729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89342" stop="90084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89838" stop="90218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCAATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGATTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTTAGATATCTCATAAATCTGGCAGTTTATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTTAAAGTGCCTGAAACATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGACTGAAACAATCAGGAAGGATGTGGTACAATCGTTTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACTCGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGGAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGTTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGACTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGTTTTTAAT</gDNA_template>
            <first_frame> K  *  C  N  K  M  K  I  L  S  Q  N  L  F  T  N  V  D  R  E  M  I  G  Q  N  G  R  M  Q  F  K  L  N  W  L  H  *  K  N  V  K  F  L  D  Q  *  S  E  H  L  K  V  S  S  Q  W  G  T  N  G  F  L  Y  E  K  E  M  R  K  V  K  S  *  D  I  R  P  D  S  L  L  K  V  F  L  K  D  L  A  L  I  I  W  R  H  I  L  Q  W  *  M  Q  S  P  L  D  I  S  *  I  W  Q  F  M  K  N  L  K  C  V  *  W  T  L  S  Q  P  I  Y  M  A  H  W  T  T  T  F  S  *  K  F  L  K  H  L  K  C  L  K  H  T  K  I  Q  E  K  L  V  Q  *  S  F  R  N  L  C  M  D  *  N  N  Q  E  G  C  G  T  I  V  *  V  N  I  C  *  R  K  G  T  K  M  T  R  F  V  P  A  F  S  L  N  G  W  G  L  N  L  *  *  *  L  C  M  L  M  I  *  T  S  L  E  L  V  K  S  F  *  K  L  L  S  V  *  K  E  N  L  K  *  K  I  S  G  R  Q  N  F  V  L  V  Y  R  L  R  I  C  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  S  V  F  T  W  I  T  H  I  H  *  V  L  Q  W  W  *  D  L  L  T  S  I  Q  I  H  F  D  L  K  R  M  M  K  S  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  V  L  Q  *  V  Y  W  Q  D  S  V  P  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  I  F  E  G  P  W  T  W  V  Y  S  I  P  M  N  P  N  Q  N  *  L  V  T  Q  M  Q  G  I  Y  Q  I  R  I  K  L  D  H  K  Q  T  I  C  L  H  V  E  T  R  Q  Y  L  G  D  Q  *  S  K  H  W  *  P  L  L  Q  I  M  Q  K  *  *  P  S  M  K  Q  V  E  *  P  I  I  F  R  K  C  V  V  F  L  *  K  R  I  Y  Q  P  Q  C  T  K  I  M  L  H  V  *  L  N  *  K  E  D  T  S  K  E  T  G  Q  S  I  S  H  Q  S  S  F  S  R  M  I  F  N  K  M  V  R  *  K  F  N  K  F  V  Q  V  I  I  L  L  I  Y  S  L  R  H  C  Q  H  Q  H  L  R  S  *  D  T  R  L  E  C  A  V  S  E  I  S  S  K  V  F  I  R  G  S  E  I  R  V  V  L  F  S  L  T  M  V  L  S  Q  V  G  F  S  W  *  G  F  *  </first_frame>
            <second_frame>  N  N  A  T  R  *  R  F  *  A  K  I  C  S  R  M  *  T  E  K  *  L  A  K  M  E  G  C  N  S  S  *  I  G  F  T  R  K  T  *  S  F  W  T  N  N  P  N  T  *  R  Y  Q  A  S  G  V  Q  M  D  F  C  T  K  K  K  *  E  R  *  S  H  E  I  *  G  P  T  R  C  S  R  F  F  S  K  T  W  H  *  L  Y  G  D  I  F  S  S  G  R  C  N  H  L  *  I  S  H  K  S  G  S  L  *  K  T  *  N  A  S  N  G  R  C  H  S  L  S  I  W  L  I  G  P  Q  H  F  H  E  N  S  *  S  I  *  S  A  *  N  I  Q  R  F  K  R  N  L  F  N  K  A  S  E  I  S  V  W  T  E  T  I  R  K  D  V  V  Q  S  F  E  *  I  F  V  K  E  R  V  Q  K  *  L  D  L  S  L  H  F  H  *  T  V  G  V  *  I  C  N  N  S  C  V  C  *  *  F  E  H  H  W  N  S  *  R  A  F  R  S  C  *  V  S  E  K  R  I  *  N  E  R  S  R  E  D  K  I  L  S  W  S  T  D  *  E  F  V  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  A  F  L  H  G  *  L  T  S  I  E  Y  S  N  G  G  K  I  S  *  H  Q  Y  R  S  I  S  T  S  R  E  *  *  R  A  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  G  K  I  Q  F  L  P  N  K  K  T  L  E  W  C  *  T  H  T  S  I  S  S  R  D  H  G  H  G  F  I  L  F  Q  *  I  Q  I  R  T  D  W  L  R  R  C  R  V  F  I  R  S  A  *  S  S  I  T  N  R  L  F  V  Y  M  W  R  H  G  N  I  L  A  I  N  E  A  N  I  G  S  H  F  F  K  S  C  R  N  N  S  H  P  *  S  K  S  N  D  P  S  Y  S  E  N  V  W  F  F  F  E  K  E  Y  T  N  H  N  V  R  R  *  C  C  M  Y  S  S  I  E  R  R  I  H  Q  R  R  P  D  K  A  Y  L  T  K  V  L  F  H  A  *  S  S  T  K  W  *  D  R  S  S  T  N  S  F  K  *  *  S  C  *  F  I  H  *  G  I  A  N  I  N  I  *  E  V  E  I  Q  D  W  N  A  P  S  P  R  Y  Q  V  K  F  S  S  G  G  A  K  Y  A  L  Y  S  F  P  *  L  W  F  C  P  K  L  G  F  P  G  K  V  F  N </second_frame>
            <third_frame>   I  M  Q  Q  D  E  D  F  E  P  K  S  V  H  E  C  R  Q  R  N  D  W  P  K  W  K  D  A  I  Q  A  E  L  A  S  L  E  K  R  E  V  F  G  P  I  I  R  T  P  E  G  I  K  P  V  G  Y  K  W  I  F  V  R  K  R  N  E  K  G  E  V  M  R  Y  K  A  R  L  V  A  Q  G  F  S  Q  R  P  G  I  D  Y  M  E  T  Y  S  P  V  V  D  A  I  T  F  R  Y  L  I  N  L  A  V  Y  E  K  L  E  M  R  L  M  D  V  V  T  A  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  E  A  F  K  V  P  E  T  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  G  L  K  Q  S  G  R  M  W  Y  N  R  L  S  E  Y  L  L  K  K  G  Y  K  N  D  S  I  C  P  C  I  F  I  K  R  L  G  S  E  F  V  I  I  A  V  Y  V  D  D  L  N  I  I  G  T  R  K  E  L  L  E  A  V  E  C  L  K  R  E  F  E  M  K  D  L  G  K  T  K  F  C  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  K  R  F  Y  M  D  N  S  H  P  L  S  T  P  M  V  V  R  S  L  D  I  N  T  D  P  F  R  P  Q  E  N  D  E  E  L  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  V  N  N  T  R  P  D  I  C  F  A  V  S  L  L  A  R  F  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  L  R  Y  L  R  G  T  M  D  M  G  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  G  Y  L  S  D  P  H  K  A  R  S  Q  T  D  Y  L  F  T  C  G  D  T  A  I  S  W  R  S  M  K  Q  T  L  V  A  T  S  S  N  H  A  E  I  I  A  I  H  E  A  S  R  M  T  H  H  I  Q  K  M  C  G  F  S  L  K  K  N  I  P  T  T  M  Y  E  D  N  A  A  C  I  A  Q  L  K  G  G  Y  I  K  G  D  R  T  K  H  I  S  P  K  F  F  F  T  H  D  L  Q  Q  N  G  E  I  E  V  Q  Q  I  R  S  S  D  N  L  A  D  L  F  T  K  A  L  P  T  S  T  F  E  K  L  R  Y  K  I  G  M  R  R  L  R  D  I  K  *  S  F  H  Q  G  E  R  N  T  R  C  T  L  F  L  N  Y  G  F  V  P  S  W  V  F  L  V  R  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88513" stop="90126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1611</number_coding_nucleotides>
                  <number_encoded_amino_acids>537</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMQQDEDFEPKSVHECRQRNDWPKWKDAIQAELASLEKREVFGPIIRTPEGIKPVGYKWIFVRKRNEKGEVMRYKARLVAQGFSQRPGIDYMETYSPVVDAITFRYLINLAVYEKLEMRLMDVVTAYLYGSLDHNIFMKIPEAFKVPETYKDSRETCSIKLQKSLYGLKQSGRMWYNRLSEYLLKKGYKNDSICPCIFIKRLGSEFVIIAVYVDDLNIIGTRKELLEAVECLKREFEMKDLGKTKFCLGLQIENLSNGILVHQSTYTEKILKRFYMDNSHPLSTPMVVRSLDINTDPFRPQENDEELLGDETPYLSAIGALMYLVNNTRPDICFAVSLLARFSSSPTKRHWNGVKHILRYLRGTMDMGLFYSNESKSELIGYADAGYLSDPHKARSQTDYLFTCGDTAISWRSMKQTLVATSSNHAEIIAIHEASRMTHHIQKMCGFSLKKNIPTTMYEDNAACIAQLKGGYIKGDRTKHISPKFFFTHDLQQNGEIEVQQIRSSDNLADLFTKALPTSTFEKLRYKIGMRRLRDIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="96514" PGL_stop="91263"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96514" e_stop="96245"/>
            <exon e_start="93683" e_stop="93605"/>
            <exon e_start="93526" e_stop="93462"/>
            <exon e_start="93259" e_stop="93160"/>
            <exon e_start="93022" e_stop="92981"/>
            <exon e_start="92874" e_stop="92833"/>
            <exon e_start="92556" e_stop="92357"/>
            <exon e_start="91600" e_stop="91263"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.515" e_score="0.937"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="96514" e_stop="96245" e_length="270"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.515">
            <gDNA_intron_boundary i_start="96244" i_stop="93684" i_length="2561"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93683" e_stop="93605" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93604" i_stop="93527" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93526" e_stop="93462" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.541">
            <gDNA_intron_boundary i_start="93461" i_stop="93260" i_length="202"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93259" e_stop="93160" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="93159" i_stop="93023" i_length="137"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93022" e_stop="92981" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="92980" i_stop="92875" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92874" e_stop="92833" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="92832" i_stop="92557" i_length="276"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="92556" e_stop="92357" e_length="200"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="92356" i_stop="91601" i_length="756"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="91600" e_stop="91263" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96514" stop="96245"/>
              <exon start="93683" stop="93605"/>
              <exon start="93526" stop="93462"/>
              <exon start="93259" stop="93160"/>
              <exon start="93022" stop="92981"/>
              <exon start="92874" stop="92833"/>
              <exon start="92556" stop="92423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96514" stop="96245"/>
              <exon start="93683" stop="93605"/>
              <exon start="93526" stop="93462"/>
              <exon start="93259" stop="93210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96477" stop="96245"/>
              <exon start="93683" stop="93605"/>
              <exon start="93526" stop="93462"/>
              <exon start="93259" stop="93160"/>
              <exon start="93022" stop="92981"/>
              <exon start="92874" stop="92833"/>
              <exon start="92556" stop="92399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96477" stop="96282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96442" stop="96245"/>
              <exon start="93683" stop="93605"/>
              <exon start="93526" stop="93462"/>
              <exon start="93259" stop="93160"/>
              <exon start="93022" stop="92981"/>
              <exon start="92874" stop="92833"/>
              <exon start="92556" stop="92373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96442" stop="96245"/>
              <exon start="93683" stop="93605"/>
              <exon start="93526" stop="93462"/>
              <exon start="93259" stop="93160"/>
              <exon start="93022" stop="92981"/>
              <exon start="92874" stop="92833"/>
              <exon start="92556" stop="92404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96442" stop="96245"/>
              <exon start="93683" stop="93605"/>
              <exon start="93526" stop="93462"/>
              <exon start="93259" stop="93160"/>
              <exon start="93022" stop="92998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96442" stop="96245"/>
              <exon start="93683" stop="93605"/>
              <exon start="93526" stop="93498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93636" stop="93605"/>
              <exon start="93526" stop="93462"/>
              <exon start="93259" stop="93160"/>
              <exon start="93022" stop="92981"/>
              <exon start="92874" stop="92833"/>
              <exon start="92556" stop="92357"/>
              <exon start="91600" stop="91450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93636" stop="93605"/>
              <exon start="93526" stop="93462"/>
              <exon start="93259" stop="93160"/>
              <exon start="93022" stop="92981"/>
              <exon start="92874" stop="92833"/>
              <exon start="92556" stop="92357"/>
              <exon start="91600" stop="91462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93636" stop="93605"/>
              <exon start="93526" stop="93462"/>
              <exon start="93259" stop="93160"/>
              <exon start="93022" stop="92981"/>
              <exon start="92874" stop="92833"/>
              <exon start="92556" stop="92357"/>
              <exon start="91600" stop="91539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93631" stop="93605"/>
              <exon start="93526" stop="93462"/>
              <exon start="93259" stop="93160"/>
              <exon start="93022" stop="92981"/>
              <exon start="92874" stop="92833"/>
              <exon start="92556" stop="92357"/>
              <exon start="91600" stop="91363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435568" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93002" stop="92981"/>
              <exon start="92874" stop="92833"/>
              <exon start="92556" stop="92357"/>
              <exon start="91600" stop="91263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTTTGTTCCCTCTTTTATAAATTCCCTCTTTCTTCATAACTCTCTTAGTTCTATTTTTGGAAAATTAAAAAAAAAAAAACTCCTAATGGCTAGAGAAAAAATTCAGATCAAGAAAATAGATAACTCCACAGCAAGACAAGTTACATTTTCAAAGAGGAGAAGAGGTTTATTCAAGAAAGCTGAAGAACTTTCTGTTCTCTGTGATGCTGATGTTGCTCTCATCATTTTCTCTTCTACTGGAAAATTATTTGACTATTCTAGCTCAAG : CATGAAACAAATTCTTGAGAGGCGTGATTTGCATTCCAAAAATCTGGAAAAATTGGATCAACCATCACTTGAACTTCAG : CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG : GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG : GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG : GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG : GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG : GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTATGTATGTAATTGGTGTATTAATCTCATGTATTCGTCTCCCATAGTTTATATAAATATTATTGTTAGTATCTATTAACTTAATTAACTAGCACTAATAATCTTTTATAATTGAACTTTGTGACTTGTAACTATATAAAGGCTTAATTATTTAATTATTTGACTTTTTTCTGTTGCTGTAAATTTAAATA</gDNA_template>
            <first_frame> I  L  C  S  L  F  Y  K  F  P  L  S  S  *  L  S  *  F  Y  F  W  K  I  K  K  K  K  T  P  N  G  *  R  K  N  S  D  Q  E  N  R  *  L  H  S  K  T  S  Y  I  F  K  E  E  K  R  F  I  Q  E  S  *  R  T  F  C  S  L  *  C  *  C  C  S  H  H  F  L  F  Y  W  K  I  I  *  L  F  *  L  K  :  H  E  T  N  S  *  E  A  *  F  A  F  Q  K  S  G  K  I  G  S  T  I  T  *  T  S   : A  C  R  K  *  Q  L  L  Q  I  K  Q  G  N  F  R  K  K  S  S  I  K  :  A  N  E  G  R  R  T  S  R  T  K  Y  *  R  V  A  T  I  G  E  I  S  *  N  W  I  E  P  R  H  R  E  K   : G  *  *  N  N  E  R  D  Q  P  T  P  T  K   : G  Y  A  S  N  G  R  K  *  K  I  K  A  T   : G  D  G  D  I  *  *  *  *  *  *  *  *  W  I  *  R  G  R  S  S  N  I  *  T  R  K  W  I  *  *  *  *  *  *  R  W  P  I  I  *  I  S  N  K  S  M  *  L  N  *  S  S  S  S  R  *  *  *  F  *  Y  F  S  Q  I  G  :  A  T  L  L  R  L  K  R  S  K  A  R  C  G  Y  F  C  M  L  L  E  E  G  E  K  K  K  *  L  L  I  I  I  I  N  *  C  L  I  N  V  K  A  N  P  K  N  F  I  L  C  M  *  L  V  Y  *  S  H  V  F  V  S  H  S  L  Y  K  Y  Y  C  *  Y  L  L  T  *  L  T  S  T  N  N  L  L  *  L  N  F  V  T  C  N  Y  I  K  A  *  L  F  N  Y  L  T  F  F  C  C  C  K  F  K   </first_frame>
            <second_frame>  F  F  V  P  S  F  I  N  S  L  F  L  H  N  S  L  S  S  I  F  G  K  L  K  K  K  K  L  L  M  A  R  E  K  I  Q  I  K  K  I  D  N  S  T  A  R  Q  V  T  F  S  K  R  R  R  G  L  F  K  K  A  E  E  L  S  V  L  C  D  A  D  V  A  L  I  I  F  S  S  T  G  K  L  F  D  Y  S  S  S  S :   M  K  Q  I  L  E  R  R  D  L  H  S  K  N  L  E  K  L  D  Q  P  S  L  E  L  Q  :  L  V  E  N  S  N  Y  S  R  L  S  K  E  I  S  E  K  S  H  R  L  R :   Q  M  R  G  E  E  L  Q  G  L  N  I  E  E  L  Q  Q  L  E  R  S  L  E  T  G  L  S  R  V  I  E  R  K  :  G  D  K  I  M  R  E  I  N  Q  L  Q  Q  K  :  G  M  H  L  M  E  E  N  E  K  L  R  Q  Q  :  V  M  E  I  S  N  N  N  N  N  N  N  N  G  Y  R  E  A  G  V  V  I  F  E  P  E  N  G  F  N  N  N  N  N  E  D  G  Q  S  S  E  S  V  T  N  P  C  N  S  I  D  P  P  P  Q  D  D  D  S  S  D  T  S  L  K  L  G :   L  P  Y  S  G  *  R  D  Q  K  Q  G  V  A  I  F  V  C  Y  *  K  K  E  K  K  K  S  N  Y  *  L  L  *  L  I  N  V  *  L  M  *  K  L  T  P  K  I  S  Y  Y  V  C  N  W  C  I  N  L  M  Y  S  S  P  I  V  Y  I  N  I  I  V  S  I  Y  *  L  N  *  L  A  L  I  I  F  Y  N  *  T  L  *  L  V  T  I  *  R  L  N  Y  L  I  I  *  L  F  S  V  A  V  N  L  N  </second_frame>
            <third_frame>   S  L  F  P  L  L  *  I  P  S  F  F  I  T  L  L  V  L  F  L  E  N  *  K  K  K  N  S  *  W  L  E  K  K  F  R  S  R  K  *  I  T  P  Q  Q  D  K  L  H  F  Q  R  G  E  E  V  Y  S  R  K  L  K  N  F  L  F  S  V  M  L  M  L  L  S  S  F  S  L  L  L  E  N  Y  L  T  I  L  A  Q   : A  *  N  K  F  L  R  G  V  I  C  I  P  K  I  W  K  N  W  I  N  H  H  L  N  F  S :   L  *  K  I  A  T  T  P  D  *  A  R  K  F  P  K  K  V  I  D  *   : G  K  *  G  E  K  N  F  K  D  *  I  L  K  S  C  N  N  W  R  D  L  L  K  L  D  *  A  A  S  *  R  E  R :   V  I  K  *  *  E  R  S  T  N  S  N  K  R :   V  C  I  *  W  K  K  M  K  N  *  G  N  R :   *  W  R  Y  L  I  I  I  I  I  I  I  M  D  I  E  R  Q  E  *  *  Y  L  N  Q  K  M  D  L  I  I  I  I  M  K  M  A  N  H  L  N  Q  *  Q  I  H  V  T  Q  L  I  L  L  L  K  M  M  I  V  L  I  L  L  S  N  W   : G  Y  L  T  Q  A  E  E  I  K  S  K  V  W  L  F  L  Y  V  I  R  R  R  R  K  K  K  V  T  T  N  Y  Y  N  *  L  M  S  D  *  C  K  S  *  P  Q  K  F  H  I  M  Y  V  I  G  V  L  I  S  C  I  R  L  P  *  F  I  *  I  L  L  L  V  S  I  N  L  I  N  *  H  *  *  S  F  I  I  E  L  C  D  L  *  L  Y  K  G  L  I  I  *  L  F  D  F  F  L  L  L  *  I  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96513" stop="96245"/>
                    <exon start="93683" stop="93605"/>
                    <exon start="93526" stop="93462"/>
                    <exon start="93259" stop="93160"/>
                    <exon start="93022" stop="92981"/>
                    <exon start="92874" stop="92833"/>
                    <exon start="92556" stop="92357"/>
                    <exon start="91600" stop="91582"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFVPSFINSLFLHNSLSSIFGKLKKKKLLMAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEISNNNNNNNNGYREAGVVIFEPENGFNNNNNEDGQSSESVTNPCNSIDPPPQDDDSSDTSLKLGLPYSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 242 chains have been computed
$ 
$ memory statistics:
$ 720096 bytes spliced alignments in total
$ 192 spliced alignments have been stored
$ 3750 bytes was the average size of a spliced alignment
$ 33224 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1954 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 272 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 23:46:27
-->
