<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 02:32:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395121" ref_strand="+" ref_description="SGN-E395121 [TUS-37-K23](-)">
      <seq>tgcaacagcagatggaaaacctgaggagaacagagaaaatgttggagaaagaaaatcatgatatgtgtcagtggttgatgaagtatgaaatgtacaagcaacagccagtagcaatgatggagcaacaagaagaagcagcaattactgaactgaatttacttggagaacaaccattgttgtctcaattttcattctttggagatcaacaccaacttggtactacaagtaattcttcagcatatcaccttcaaacttctcacccttttactccctctacctacgattgatgaggaggagctgcaattgctggggataattaattctacatttcctttggcatatttagaagctatatatagaaagcatgtaaactttaattatatgcatcttaaggatctattgattgtaactaattaaggatgtctagtattggtacaatgaagttttactataattcatatgtgatgtataagaaatttgtttgggtcattttaatttgatggatttataattataaaattttagacttgattaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="7551" stop="5768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7251" g_stop="7220" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7219" i_stop="7140" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7139" g_stop="7098" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="74" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7097" i_stop="6817" i_length="281">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6816" g_stop="6609" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="282" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6608" i_stop="6323" i_length="286">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6322" g_stop="6066" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="539" r_length="257" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E395121" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7251" e_stop="7220"/>
          <exon e_start="7139" e_stop="7098"/>
          <exon e_start="6816" e_stop="6609"/>
          <exon e_start="6322" e_stop="6066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACAGCAGATGGAAAACCTGAAGAGAACAGTAATATTTTATTTATTTATTTTTCTTAATAAATAAAAATATATATGATTTATTCAATTTTTTTTAAAAAAATGTGGCAGGAGAAAATGTTGGAGAAAGAAAATCATGATATGTGTCAGTGGGTAAGTCTTTAATTTATCGCACGTTAATTATTTGACTTAATTAATTACTCTTTTTTATATGGTAAAAGTTTGGTCAAACATGTATTCTGAAACATATATGAATGAATCAATTAATTAAACGTATAAAAAGTAGAATTTTATTGAATGTACCAATAAGCTAGACTGTTATTTCATTTCATATATAAATATCTATTGGAATGATCGATTATATTTACATGCATTTTTAAATATAATAAGTAAGTATTTATAAATATTGGATTTGCTATTGCATGTGAAATTAGTTGATGAAGTATGAAATGTACAAGCAACAGCCAGTAGCAATGATGGAGCAACAAGAAGAAGCAGCAATTACTGAACTGAATTTACTTGGAGAACAACCATTGTTGTCTCAATTTTCATTCTTTGGAGATCAACACCAACTTGGTACTACAAGTAATTCTTCAGCATATCACCTTCAAACTTCTCACCCTTTTACTCCCTCTACCTACGGTAAGAATACACGAGATATCTCAATCTTATTTCATTCAACTTGAAGTATTTTAGCATATGTGAAATAAATTAGTCAGCGAATTAAACGGTACTATAAAAATTCTTTCCATGATTTGCAGTTTTTTTTTCTTGAGCTTAATTATTTGTGGGACTTACTATATATATAGCACATAAAATTTTGATTAGAAAAGCCTTGTTTCAATCATATAGGGACTGTTGAAATATATTCACTATAGTTTTATTATTATGTACGTACTAATGTTTTTTTGAAAAACATAATTTGTAGATTGATGAGGAGGAGCTGCAATTGCTGGGGATAATTAATTCTACATTTCCTTTGGCATATTTAGAAGCTATATATAGAAAGCATGTAAACTTTAATTATATGCATCTTAAGGATCTATTGATTGTAACTAATTAAGGATGTCTAGTATTGGTACAATGAAGTTTTACTATAATTCATATGTGATGTATAAGAAATTTGTTTGGGTCATTTTAATTTGATGGATTTATAATTATAAAATTTTAGACTTGATTAAGATG</genome_strand>
        <mrna_strand>TGCAACAGCAGATGGAAAACCTGAGGAGAACA................................................................................GAGAAAATGTTGGAGAAAGAAAATCATGATATGTGTCAGTGG.........................................................................................................................................................................................................................................................................................TTGATGAAGTATGAAATGTACAAGCAACAGCCAGTAGCAATGATGGAGCAACAAGAAGAAGCAGCAATTACTGAACTGAATTTACTTGGAGAACAACCATTGTTGTCTCAATTTTCATTCTTTGGAGATCAACACCAACTTGGTACTACAAGTAATTCTTCAGCATATCACCTTCAAACTTCTCACCCTTTTACTCCCTCTACCTACG..............................................................................................................................................................................................................................................................................................ATTGATGAGGAGGAGCTGCAATTGCTGGGGATAATTAATTCTACATTTCCTTTGGCATATTTAGAAGCTATATATAGAAAGCATGTAAACTTTAATTATATGCATCTTAAGGATCTATTGATTGTAACTAATTAAGGATGTCTAGTATTGGTACAATGAAGTTTTACTATAATTCATATGTGATGTATAAGAAATTTGTTTGGGTCATTTTAATTTGATGGATTTATAATTATAAAATTTTAGACTTGATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232865" ref_strand="+" ref_description="SGN-E232865 [cLED-8-C18]">
      <seq>tcacttccaattcatgatcatagggtggaacaatatgatgaaataacaaaaatgaaaagagaaacattgaatcttgaattaagtcttcaaagatacaaaggtgatgaattgaactcagcacaatatgatgaattaaatgaacttgagaagcagcttgaaaattctattaacaaaattagagccagaaagcttgaactcttgcaacagcagatggaaaacctgaagagaacagagaaaatgttggagaaagaaaatcatgatatgtgtcagtggttgatgaagtatgaaatgtacaagcaacagccagtagcaatgatggagcaacaagaagaagcagcaattactgaactgaatttacttggagaacaaccattgttgtctcaattttcattctttggagatcaacaccaacttggtactacaagtaattcttcagcatatcaccttcaaacttctcacccttttactccctctacctacgattgatgaggaggagctgcaattgctggggataattaattctacatttcctttggcatatttagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="7957" stop="5955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7657" g_stop="7634" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7633" i_stop="7543" i_length="91">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7542" g_stop="7378" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="189" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7377" i_stop="7262" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7261" g_stop="7220" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="231" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7219" i_stop="7140" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7139" g_stop="7098" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="273" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7097" i_stop="6817" i_length="281">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6816" g_stop="6609" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="481" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6608" i_stop="6323" i_length="286">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6322" g_stop="6255" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="549" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E232865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7657" e_stop="7634"/>
          <exon e_start="7542" e_stop="7378"/>
          <exon e_start="7261" e_stop="7220"/>
          <exon e_start="7139" e_stop="7098"/>
          <exon e_start="6816" e_stop="6609"/>
          <exon e_start="6322" e_stop="6255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTCCAATTCATGATCATAGGGTATGATCACAAAATTTTGTACTTATTTTTTTTTAAAATAAAATAATTATTTGACTATTGGAACATTGAATTTATAAAATTTTAATTATAGGTGGAACAATATGATGAAATAACAAAAATGAAAAGAGAAACATTGAATCTTGAATTAAGTCTTCAAAGATACAAAGGTGATGAATTGAACTCAGCACAATATGATGAATTAAATGAACTTGAGAAGCAGCTTGAAAATTCTATTAACAAAATTAGAGCCAGAAAGGTACATTTTAATCGATAGTTAATTTATTTCTTTTTAATTTAAATTAATAAATTATGTTTATTGATATAATATATATTAGTGAGAGTTCAATTTCCCTAATTTTACAATGGTTGCAGCTTGAACTCTTGCAACAGCAGATGGAAAACCTGAAGAGAACAGTAATATTTTATTTATTTATTTTTCTTAATAAATAAAAATATATATGATTTATTCAATTTTTTTTAAAAAAATGTGGCAGGAGAAAATGTTGGAGAAAGAAAATCATGATATGTGTCAGTGGGTAAGTCTTTAATTTATCGCACGTTAATTATTTGACTTAATTAATTACTCTTTTTTATATGGTAAAAGTTTGGTCAAACATGTATTCTGAAACATATATGAATGAATCAATTAATTAAACGTATAAAAAGTAGAATTTTATTGAATGTACCAATAAGCTAGACTGTTATTTCATTTCATATATAAATATCTATTGGAATGATCGATTATATTTACATGCATTTTTAAATATAATAAGTAAGTATTTATAAATATTGGATTTGCTATTGCATGTGAAATTAGTTGATGAAGTATGAAATGTACAAGCAACAGCCAGTAGCAATGATGGAGCAACAAGAAGAAGCAGCAATTACTGAACTGAATTTACTTGGAGAACAACCATTGTTGTCTCAATTTTCATTCTTTGGAGATCAACACCAACTTGGTACTACAAGTAATTCTTCAGCATATCACCTTCAAACTTCTCACCCTTTTACTCCCTCTACCTACGGTAAGAATACACGAGATATCTCAATCTTATTTCATTCAACTTGAAGTATTTTAGCATATGTGAAATAAATTAGTCAGCGAATTAAACGGTACTATAAAAATTCTTTCCATGATTTGCAGTTTTTTTTTCTTGAGCTTAATTATTTGTGGGACTTACTATATATATAGCACATAAAATTTTGATTAGAAAAGCCTTGTTTCAATCATATAGGGACTGTTGAAATATATTCACTATAGTTTTATTATTATGTACGTACTAATGTTTTTTTGAAAAACATAATTTGTAGATTGATGAGGAGGAGCTGCAATTGCTGGGGATAATTAATTCTACATTTCCTTTGGCATATTTAGAAGC</genome_strand>
        <mrna_strand>TCACTTCCAATTCATGATCATAGG...........................................................................................GTGGAACAATATGATGAAATAACAAAAATGAAAAGAGAAACATTGAATCTTGAATTAAGTCTTCAAAGATACAAAGGTGATGAATTGAACTCAGCACAATATGATGAATTAAATGAACTTGAGAAGCAGCTTGAAAATTCTATTAACAAAATTAGAGCCAGAAAG....................................................................................................................CTTGAACTCTTGCAACAGCAGATGGAAAACCTGAAGAGAACA................................................................................GAGAAAATGTTGGAGAAAGAAAATCATGATATGTGTCAGTGG.........................................................................................................................................................................................................................................................................................TTGATGAAGTATGAAATGTACAAGCAACAGCCAGTAGCAATGATGGAGCAACAAGAAGAAGCAGCAATTACTGAACTGAATTTACTTGGAGAACAACCATTGTTGTCTCAATTTTCATTCTTTGGAGATCAACACCAACTTGGTACTACAAGTAATTCTTCAGCATATCACCTTCAAACTTCTCACCCTTTTACTCCCTCTACCTACG..............................................................................................................................................................................................................................................................................................ATTGATGAGGAGGAGCTGCAATTGCTGGGGATAATTAATTCTACATTTCCTTTGGCATATTTAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395122" ref_strand="+" ref_description="SGN-E395122 [TUS-37-K23]">
      <seq>aaaacacaagaagaagaacaaaggtgataacaataataataaataaatataatggggagaggaaagatagaagtgaagagaattgagaacaaaacaagtagacaagttactttctcaaagagaagagctggacttttgaagaaaacacatgaactttctgttctttgtgatgctcaaattggactcatcattttctcaaccaaaggcaaattgtttgagtacaccactcaacctcacagcatgggtgaaatcattaataagtatctccaaactactggtgcctcacttccaattcatgatcatagggtggaacaatatgatgaaataacaaaaatgaaaagagaaacattgaatcttgaattaagtcttcaaagatacaaaggtgatgaattgaactcagcacaatatgatgaattaaatgaacttgagaagcagcttgaaaattctattaacaaaattagagccagaaagcttgaactcttgcaacagcagatggaaaacctgaagagaacagagaaaatgttggagaaagaaaatcatgatatgtgtcagtggttgatgaagtatgaaatgtacaagcaacagccagtagcaatgatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="8935" stop="6469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8635" g_stop="8613" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8612" i_stop="8347" i_length="266">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8346" g_stop="8131" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="239" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8130" i_stop="7701" i_length="430">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7700" g_stop="7634" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="306" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7633" i_stop="7543" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7542" g_stop="7378" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="471" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7377" i_stop="7262" i_length="116">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7261" g_stop="7220" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="513" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7219" i_stop="7140" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7139" g_stop="7098" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="555" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7097" i_stop="6817" i_length="281">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6816" g_stop="6769" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="603" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E395122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8635" e_stop="8613"/>
          <exon e_start="8346" e_stop="8131"/>
          <exon e_start="7700" e_stop="7634"/>
          <exon e_start="7542" e_stop="7378"/>
          <exon e_start="7261" e_stop="7220"/>
          <exon e_start="7139" e_stop="7098"/>
          <exon e_start="6816" e_stop="6769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACAAGAAGAAGAACAAAGGTAAACTCTTTATTTTCCTTTTTATCTCCTCTACTAATTCTTCCATATATTAATAACTCATCAAAATTAACCATTTCTCACTTTTGGATCTTGTTTCTATACATGCTTTTGTGCAAATTTCAAGGAAATTAACAAACAATATTTGTCTTTTAAACTTTTAAGAAAGGAATTTTTTCGTTTCTCCATTAAAATCCATATTTTTTTCTAATTTGATGATGCATGCATGCATGTACTTTCATTAATTAATATTTGTTATTATTATATAGGTGATAACAATAATAATAAATAAATATAATGGGGAGAGGAAAGATAGAAGTGAAGAGAATTGAGAACAAAACAAGTAGACAAGTTACTTTCTCAAAGAGAAGAGCTGGACTTTTGAAGAAAACACATGAACTTTCTGTTCTTTGTGATGCTCAAATTGGACTCATCATTTTCTCAACCAAAGGCAAATTGTTTGAGTACACCACTCAACCTCACAGGTTTTTTTTTTAATACGTTCGATTATACTGAATTTATTATTGTTATAATTTAGGTTAGTGTTTATGTTGACCAATTAACTCAAAGTGCCTAAGAGATTAAGTTATGAAATATATTAGGGTTTCTTTGAAGTGTAATAAATTTCTTATTTTTCTTTTGTTTTAATGCTTCTTTTTATTATATTTAAATCTTACTATAGTTCTAAGAAAAGTGATGTTCTCATAGAATCATTAATTTCCATTAAGGAATTAATTAATTATATTAATCCTTCTTTTATTATATTACATAACATCCTAATGAGTTAGATTAGGCCCCCCTCCTAATTAAATGAGTTTTTTTTTTGTTTTGGTTGTTAATTAAATTCTATATTCTTTTTAATTAGTAACAAATTAATGCTCTATTTGATTTTGTATTTTTTTATTAACCTCACAGCATGGGTGAAATCATTAATAAGTATCTCCAAACTACTGGTGCCTCACTTCCAATTCATGATCATAGGGTATGATCACAAAATTTTGTACTTATTTTTTTTTAAAATAAAATAATTATTTGACTATTGGAACATTGAATTTATAAAATTTTAATTATAGGTGGAACAATATGATGAAATAACAAAAATGAAAAGAGAAACATTGAATCTTGAATTAAGTCTTCAAAGATACAAAGGTGATGAATTGAACTCAGCACAATATGATGAATTAAATGAACTTGAGAAGCAGCTTGAAAATTCTATTAACAAAATTAGAGCCAGAAAGGTACATTTTAATCGATAGTTAATTTATTTCTTTTTAATTTAAATTAATAAATTATGTTTATTGATATAATATATATTAGTGAGAGTTCAATTTCCCTAATTTTACAATGGTTGCAGCTTGAACTCTTGCAACAGCAGATGGAAAACCTGAAGAGAACAGTAATATTTTATTTATTTATTTTTCTTAATAAATAAAAATATATATGATTTATTCAATTTTTTTTAAAAAAATGTGGCAGGAGAAAATGTTGGAGAAAGAAAATCATGATATGTGTCAGTGGGTAAGTCTTTAATTTATCGCACGTTAATTATTTGACTTAATTAATTACTCTTTTTTATATGGTAAAAGTTTGGTCAAACATGTATTCTGAAACATATATGAATGAATCAATTAATTAAACGTATAAAAAGTAGAATTTTATTGAATGTACCAATAAGCTAGACTGTTATTTCATTTCATATATAAATATCTATTGGAATGATCGATTATATTTACATGCATTTTTAAATATAATAAGTAAGTATTTATAAATATTGGATTTGCTATTGCATGTGAAATTAGTTGATGAAGTATGAAATGTACAAGCAACAGCCAGTAGCAATGATGGAG</genome_strand>
        <mrna_strand>AAAACACAAGAAGAAGAACAAAG..........................................................................................................................................................................................................................................................................GTGATAACAATAATAATAAATAAATATAATGGGGAGAGGAAAGATAGAAGTGAAGAGAATTGAGAACAAAACAAGTAGACAAGTTACTTTCTCAAAGAGAAGAGCTGGACTTTTGAAGAAAACACATGAACTTTCTGTTCTTTGTGATGCTCAAATTGGACTCATCATTTTCTCAACCAAAGGCAAATTGTTTGAGTACACCACTCAACCTCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGGTGAAATCATTAATAAGTATCTCCAAACTACTGGTGCCTCACTTCCAATTCATGATCATAGG...........................................................................................GTGGAACAATATGATGAAATAACAAAAATGAAAAGAGAAACATTGAATCTTGAATTAAGTCTTCAAAGATACAAAGGTGATGAATTGAACTCAGCACAATATGATGAATTAAATGAACTTGAGAAGCAGCTTGAAAATTCTATTAACAAAATTAGAGCCAGAAAG....................................................................................................................CTTGAACTCTTGCAACAGCAGATGGAAAACCTGAAGAGAACA................................................................................GAGAAAATGTTGGAGAAAGAAAATCATGATATGTGTCAGTGG.........................................................................................................................................................................................................................................................................................TTGATGAAGTATGAAATGTACAAGCAACAGCCAGTAGCAATGATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242163" ref_strand="+" ref_description="SGN-E242163 [cLED-37-P16]">
      <seq>aaacacaagaagaagaacaaaggtgataacaataataataaataaatataatggggagaggaaagatagaagtgaagagaattgagaacaaaacaagtagacaagttactttctcaaagagaagagctggacttttgaagaaaacacatgaactttctgttctttgtgatgctcaaattggactcatcattttctcaaccaaaggcaaattgtttgagtacaccactcaacctcacagcatgggtgaaatcattaataagtatctgcaaactactggtgcctcacttccaattcatgatcatagggtggaacaatatgatgaaataacaaaaatgaaaagagaaacattgaatcttgaattaagtcttcaaagatacaaaggtgatgaattgaactcagcacaatatgatgaattaaatgaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="8934" stop="7122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8634" g_stop="8613" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8612" i_stop="8347" i_length="266">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8346" g_stop="8131" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="238" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8130" i_stop="7701" i_length="430">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7700" g_stop="7634" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="305" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7633" i_stop="7543" i_length="91">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7542" g_stop="7422" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="426" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E242163" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8634" e_stop="8613"/>
          <exon e_start="8346" e_stop="8131"/>
          <exon e_start="7700" e_stop="7634"/>
          <exon e_start="7542" e_stop="7422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACAAGAAGAAGAACAAAGGTAAACTCTTTATTTTCCTTTTTATCTCCTCTACTAATTCTTCCATATATTAATAACTCATCAAAATTAACCATTTCTCACTTTTGGATCTTGTTTCTATACATGCTTTTGTGCAAATTTCAAGGAAATTAACAAACAATATTTGTCTTTTAAACTTTTAAGAAAGGAATTTTTTCGTTTCTCCATTAAAATCCATATTTTTTTCTAATTTGATGATGCATGCATGCATGTACTTTCATTAATTAATATTTGTTATTATTATATAGGTGATAACAATAATAATAAATAAATATAATGGGGAGAGGAAAGATAGAAGTGAAGAGAATTGAGAACAAAACAAGTAGACAAGTTACTTTCTCAAAGAGAAGAGCTGGACTTTTGAAGAAAACACATGAACTTTCTGTTCTTTGTGATGCTCAAATTGGACTCATCATTTTCTCAACCAAAGGCAAATTGTTTGAGTACACCACTCAACCTCACAGGTTTTTTTTTTAATACGTTCGATTATACTGAATTTATTATTGTTATAATTTAGGTTAGTGTTTATGTTGACCAATTAACTCAAAGTGCCTAAGAGATTAAGTTATGAAATATATTAGGGTTTCTTTGAAGTGTAATAAATTTCTTATTTTTCTTTTGTTTTAATGCTTCTTTTTATTATATTTAAATCTTACTATAGTTCTAAGAAAAGTGATGTTCTCATAGAATCATTAATTTCCATTAAGGAATTAATTAATTATATTAATCCTTCTTTTATTATATTACATAACATCCTAATGAGTTAGATTAGGCCCCCCTCCTAATTAAATGAGTTTTTTTTTTGTTTTGGTTGTTAATTAAATTCTATATTCTTTTTAATTAGTAACAAATTAATGCTCTATTTGATTTTGTATTTTTTTATTAACCTCACAGCATGGGTGAAATCATTAATAAGTATCTCCAAACTACTGGTGCCTCACTTCCAATTCATGATCATAGGGTATGATCACAAAATTTTGTACTTATTTTTTTTTAAAATAAAATAATTATTTGACTATTGGAACATTGAATTTATAAAATTTTAATTATAGGTGGAACAATATGATGAAATAACAAAAATGAAAAGAGAAACATTGAATCTTGAATTAAGTCTTCAAAGATACAAAGGTGATGAATTGAACTCAGCACAATATGATGAATTAAATGAACTTG</genome_strand>
        <mrna_strand>AAACACAAGAAGAAGAACAAAG..........................................................................................................................................................................................................................................................................GTGATAACAATAATAATAAATAAATATAATGGGGAGAGGAAAGATAGAAGTGAAGAGAATTGAGAACAAAACAAGTAGACAAGTTACTTTCTCAAAGAGAAGAGCTGGACTTTTGAAGAAAACACATGAACTTTCTGTTCTTTGTGATGCTCAAATTGGACTCATCATTTTCTCAACCAAAGGCAAATTGTTTGAGTACACCACTCAACCTCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGGTGAAATCATTAATAAGTATCTGCAAACTACTGGTGCCTCACTTCCAATTCATGATCATAGG...........................................................................................GTGGAACAATATGATGAAATAACAAAAATGAAAAGAGAAACATTGAATCTTGAATTAAGTCTTCAAAGATACAAAGGTGATGAATTGAACTCAGCACAATATGATGAATTAAATGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390955" ref_strand="+" ref_description="SGN-E390955 [TUS-46-N14](-)">
      <seq>aaaattaggaggaacaaattattggccacaaaggaaggggatactagtagagtagatgctggacctattgcccagtcggtgcatatccaagaaaagattgtagttgatcattcttcaacttcaacaaacaagccagtatacagtagtgcagctgtaaatgcttctgcacgagtgcatgtttccatagctaatggttctgatgtgaatcgtctaaagcaggagaagctaaagggagtttctggcagctctgttgatccacgaggagcagatgcggtgccaaaaaagaaagtgaagaggaaacatgagtcagaattgggtgaaagtttgtttcacagcgagaaattgacttccacacaggcagaggagaagaacaaaaccaacaagcatactggttgtcctactccaaaaccaaataatgtttcgacctccggctttgaacagctgacatgatgcaatttctgcctcttgcattgcccctgttttctagttctgtaattatatatagttatcttggcgcgttacccataagaaacctgagtctcgtatttttgaagtcacagctgaaaggcacatttagttaaggcaaaacattagaaaattgatgtcttattggcagctagggtctctgctgttgggcattttgatgctagttttatttatggactggaaattgctctcttccttggttcattctgttaccagctaaaattcggtcgtcatcgaactttttagtatttttctgggttggataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="13274" stop="11922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12974" g_stop="12213" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E390955" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12974" e_stop="12213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAGGAGGAACAAATTATTGGCCACAAAGGAAGGGGATACTAGTAGAGTAGATGCTGGACCTATTGCCCAGTCGGTGCATATCCAAGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCTCTTCCTTGGTTCATTCTGTTACCAGCTAAAATTCGGTCGTCATCGAACTTTTTAGTATTTTTCTGGGTTGGATAAATGCAGGATT</genome_strand>
        <mrna_strand>AAAATTAGGAGGAACAAATTATTGGCCACAAAGGAAGGGGATACTAGTAGAGTAGATGCTGGACCTATTGCCCAGTCGGTGCATATCCAAGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCTCTTCCTTGGTTCATTCTGTTACCAGCTAAAATTCGGTCGTCATCGAACTTTTTAGTATTTTTCTGGGTTGGATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390764" ref_strand="+" ref_description="SGN-E390764 [TUS-47-M13](-)">
      <seq>aagccagtatacagtagtgcagctgtaaatgcttctgcacgagtgcatgtttccatagctaatggttctgatgtgaatcgtctaaagcaggagaagctaaagggagtttctggcagctctgttgatccacgaggagcagatgcggtgccaaaaaagaaagtgaagaggaaacatgagtcagaattgggtgaaagtttgtttcacagcgagaaattgacttccacacaggcagaggagaagaacaaaaccaacaagcatactggttgtcctactccaaaaccaaataatgtttcgacctccggctttgaacagctgacatgatgcaatttctgcctcttgcattgcccctgttttctagttctgtaattatatatagttatcttggcgcgttacccataagaaacctgagtctcgtatttttgaagtcacagctgaaaggcacatttagttaaggcaaaacattagaaaattgatgtcttattggcagctagggtctctgctgttgggcattttgatgctagttttatttatggactggaaattgctctcttccttggttcattttgttaccaggtaaaattcggtcgtcatcgaactttttagtatttttatgggtaggataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="13145" stop="11922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12845" g_stop="12213" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E390764" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12845" e_stop="12213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCTCTTCCTTGGTTCATTCTGTTACCAGCTAAAATTCGGTCGTCATCGAACTTTTTAGTATTTTTCTGGGTTGGATAAATGCAGGATT</genome_strand>
        <mrna_strand>AAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCTCTTCCTTGGTTCATTTTGTTACCAGGTAAAATTCGGTCGTCATCGAACTTTTTAGTATTTTTATGGGTAGGATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547963" ref_strand="+" ref_description="SGN-E547963 [TUS-56-L6](-)">
      <seq>agaaaagattgaagttgatcattcttcaaattcaacaaacaagccagtatacagtagtgcagctgtaaatgcttctgcacgagtgcatgtttccatagctaatggttctgatgtgaatcgtctaaagcaggagaagctaaagggagtttctggcagctctgttgatccacgaggagcagatgcggtgccaaaaaagaaagtgaagaggaaacatgagtcagaattgggtgaaagtttgtttcacagcgagaaattgacttccacacaggcagaggagaagaacaaaaccaacaagcatactggttgtcctactccaaaaccaaataatgtttcgacctccggctttgaacagctgacatgatgcaatttctgcctcttgcattgcccctgttttctagttctgtaattatatatagttatcttggcgcgttacccataagaaacctgagtctcgtatttttgaagtcacagctgaaaggcacatttagttaaggcaaaacattagaaaattgatgtcttattggcagctagggtctctgctgttgggcattttgatgctagttttatttatggactggaaattgctctcttaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="13185" stop="11995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12885" g_stop="12290" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="622"/>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E547963" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12885" e_stop="12290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCTCTTCCTTG</genome_strand>
        <mrna_strand>AGAAAAGATTGAAGTTGATCATTCTTCAAATTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCTCTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230789" ref_strand="+" ref_description="SGN-E230789 [cLEL-35-N24](-)">
      <seq>ccggctttgaacagctgacatgatgcaatttctgcctcttgcattgcccctgttttctagttctgtaattatatatagttatcttggcgcgttacccataagaaacctgagtctcgtatttttgaagtcacagctgaaaggcacatttagttaaggcaaaacattagaaaattgatgtcttattggcagctagggtctctgctgttgggcattttgatgctagttttatttatggactggaaattgctctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="12847" stop="11998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12547" g_stop="12298" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="251" polyA_stop="267"/>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E230789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12547" e_stop="12298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCT</genome_strand>
        <mrna_strand>CCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300013" ref_strand="+" ref_description="SGN-E300013 [cLEW-11-L15]">
      <seq>ggaacaaattattggccacaaaggaaggggatactagtagagtagatgctggacctattgcccagtcggtgcatatccaagaaaagattgtagttgatcattcttcaacttcaacaaacaagccagtatacagtagtgcagctgtaaatgcttctgcacgagtgcatgtttccatagctaatggttctgatgtgaatcgtctaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="13264" stop="12458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12964" g_stop="12758" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E300013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12964" e_stop="12758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAAATTATTGGCCACAAAGGAAGGGGATACTAGTAGAGTAGATGCTGGACCTATTGCCCAGTCGGTGCATATCCAAGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGC</genome_strand>
        <mrna_strand>GGAACAAATTATTGGCCACAAAGGAAGGGGATACTAGTAGAGTAGATGCTGGACCTATTGCCCAGTCGGTGCATATCCAAGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265463" ref_strand="+" ref_description="SGN-E265463 [cLEI-9-H2]">
      <seq>ttctgaaataccaacaacaaagaaagctgcagatacccaagatatgtcggagcgatctccatcagcatcattgcgtggcaattctgcagaagaaaaagaccttgaccagcagaaaattggagtcacccaatccaagaatctaggtgacaaattaaaagatggttctgaaatatctggaaaatcatctcagaggttacatgacagaagttcttatgctcaagagaaatctaatgttggaagatcagtaaatatttctgacggaatagaccagtctgttcagcgccgtgatgagaagtttaatgtcagtggctttgagggaaagaactcaggtcagactatgaaagatcctgctatgcagagaaaggaaggatcgagtggtagaccaaaaggtacaatgcttgagaaggccatcagggatttggagaagatcgttgcagaattaaggccaccaaatatggaggttcaggatgctgataattcatctcaggctatcaaaaggaggttaccacttgaaataaagcagaggctggcaaaagttgcccgactggcgcaagctagtcatggaaaaatatccaatgagttaattagtcgtttaatgagtattgtcggccacttgatacaagcttcgcacattgaagcggaacttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="19041" stop="15853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18741" g_stop="18402" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18401" i_stop="16732" i_length="1670">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16731" g_stop="16632" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="440" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16631" i_stop="16466" i_length="166">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16465" g_stop="16356" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="550" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16355" i_stop="16246" i_length="110">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16245" g_stop="16159" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="638" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E265463" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18741" e_stop="18402"/>
          <exon e_start="16731" e_stop="16632"/>
          <exon e_start="16465" e_stop="16356"/>
          <exon e_start="16245" e_stop="16159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAAATACCAACAACAAAGAAAGCTGCAGATACCCAAGATATGTCGGAGCTATCTCCATCAGCATCATTGCGTGGCAATTCTGCAGAAGAAAAAGACCTTGACCAGCAGAAAATTGGAGTCACCCAATCCAAGAATCTAGGTGACAAATTAAAAGATGGTTCTGAAATATCTGGAAAATCATCTCAGAGGTTACATGACAGAAGTTCTTATGCTCAAGAGAAATCTAATGTTGGAAGATCAGTAAATATTTCTGACGGAATAGACCAGTCTGTTCAGCGCCGTGATGAGAAGTTTAATGTCAGTGGCTTTGAGGGAAAGAACTCAGGTCAGACTATGGTGAGTTGTTTACTGTCCTCTCCCTGCGATAGTGCGTTTCTTTGCTATCTTATAAATGCTTGATGTCATGAATCATTTCTCTATGGTATTTTTTTTATAACCGTGGTGTCCGGCCAACTTGCCTGCACCTCAGACCTTCACCTGAGATCTCATGGTTCTCAGCCCTCCTAATTGACCACTAGGCCACACCCATGGGTGCCATTTCTTCGTTGTATTTATAGATTGATTTCTAATGATTGCTTGAGAACATTGCTGAAGGAAATTTTTTTCTAGTAGATCATCGTTCAATGTAGGGATAGCACTTATTAATGATCAGGTGAAGCTTTTGAAATGTTTACAGCAAAGTAGAGCTGCACCTATCATGAGCCAAATAATGTCAATAGATGCTAGGAAAAACATGCTGCCATGAAATCTTTGGGTCTCTTCTGGTGTTATTCCTTCATGGTCTCTACTAATCATTCCAAATCAAACCAGTTTCCTCTAAAAAGGTACTCCCACCGTCCCAATTTATGTGACAGCAAGTGAGGATAACAGATAAAGAATCAGTAGAAACCTTGAGATTGATAAAAAGAGAAGAAATTAATCTCTTTAGCCAGTCCCCAAGAGAATGACATCTTTCTAATTTAGTAACAGTTTGACATTGAACTTTTCAGTTTACCCTACGTGAGATTTTTATAGCCACATAATCTATGACTTATTTTCGATTACAAGTTTCAAAAGTTCTTCTCATTCTGAAACTTCGTGCTTGGCCAAACACCTTTGCTTTAAATTGGGGAGTACTAAATAGGTCTTAACCTTAACTAGCAAAAATCAAATGTAATTGATGAGAATATTGACGTTAGACTTAACTCAAACCCAAAAGCTAAAGGTGAGGATTGTCCGTACTACAATTATACCCTTAACAAATACAAGATTCTACATCCTTGCAGACCTATGACTTGGAGTATGGATAACACTATGTTGGGGCTTAGCATTAGATATAACAATATGAGGGATGGGTTTGACTTTGTTTACATGATAAAAGCATGGACCTAGTCTGCTCTAACAACTTAAAACATTTAAATGTGATGGTCACATAATTCAACACTGTATTGGATAAAACAGTAAGTTGGTTCTGATTGCCATCCGTTATCAAAAAGAACTTTTTTTTGTGCTTTGACATTATGATTAACATATATATTAATCAATATGACCTTCTAATGGTCTGGTAAGTCCTTCTCCCCCTACTCTGTCAGTTTTTCCTGTGGCTACTGGCAACCATTAAATTTGCAGTTAAAATGAAAACATGCATACATAACGATCAATCCCCTGTAAACTCCCCGGACAACTTTTTGAATTTTGTTAGCTCCTTATCTTTAGTATATGGCTCACGGTAATGGTGCTGACCTGTTCACTTTTGATCTCACTCTTTGTGTACTATGTTCATCTTCTTGATGTCTTTAATGAAATCTATTACTTCATCAAAAACAATCAAGAAGAGCTCTAGGTCTAGAAGTCCTTTCCTCTCCATTCAGTTGTTTGCCTTGAATCTCAGATCTGACCACTTGACCCTGCACCATACAACATTCAGAGACACACGTATGGTGCAGGGTTATGCAGTCATCTGAGATTCCTAATAAGCTTTTGTTCTTGCTGTAACTGACGCTCAGGTGCTCCCTAAAACTATACAGAAAGATCCTGCTATGCAGAGAAAGGAAGGATCGAGTGGTAGACCAAAAGGTACAATGCTTGAGAAGGCCATCAGGGATTTGGAGAAGATCGTTGCAGAATGTATGCCCAAAACTTTTGACATATGTTTTTCTAACCGATAATTCATTTTCTTATGCATTGGTCGTCTATTTAATTTTTGAAAATATCACAGTAAGGCCGAGGTTCAGATGTCGTTTCTATTTGATAATAACTAATTTTTTTTACATTCAATCTCAAATTATCACAGTAAGGCCACCAAATATGGAGGTTCAGGATGCTGATAATTCATCTCAGGCTATCAAAAGGAGGTTACCACTTGAAATAAAGCAGAGGCTGGCAAAAGTTGCCCGACTGGCGGTATAGACTAAGCTATATGGTCTAATTAGTTGTTATCTTTTTGGTTGATGTATTTACTTATATTCCATAGCGTACTTATCGAAGTCAAATATTTCTGTTGATGGTTGCAGCAAGCTAGTCATGGAAAAATATCCAATGAGTTAATTAGTCGTTTAATGAGTATTGTCGGCCACTTGATAC-AGCTTCGCACATTGAAG</genome_strand>
        <mrna_strand>TTCTGAAATACCAACAACAAAGAAAGCTGCAGATACCCAAGATATGTCGGAGCGATCTCCATCAGCATCATTGCGTGGCAATTCTGCAGAAGAAAAAGACCTTGACCAGCAGAAAATTGGAGTCACCCAATCCAAGAATCTAGGTGACAAATTAAAAGATGGTTCTGAAATATCTGGAAAATCATCTCAGAGGTTACATGACAGAAGTTCTTATGCTCAAGAGAAATCTAATGTTGGAAGATCAGTAAATATTTCTGACGGAATAGACCAGTCTGTTCAGCGCCGTGATGAGAAGTTTAATGTCAGTGGCTTTGAGGGAAAGAACTCAGGTCAGACTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATCCTGCTATGCAGAGAAAGGAAGGATCGAGTGGTAGACCAAAAGGTACAATGCTTGAGAAGGCCATCAGGGATTTGGAGAAGATCGTTGCAGAAT......................................................................................................................................................................TAAGGCCACCAAATATGGAGGTTCAGGATGCTGATAATTCATCTCAGGCTATCAAAAGGAGGTTACCACTTGAAATAAAGCAGAGGCTGGCAAAAGTTGCCCGACTGGCG..............................................................................................................CAAGCTAGTCATGGAAAAATATCCAATGAGTTAATTAGTCGTTTAATGAGTATTGTCGGCCACTTGATACAAGCTTCGCACATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E578212" ref_strand="+" ref_description="SGN-E578212 [LE12AF11]">
      <seq>caaattttcctcttctttagggtttcgaatcagtgtttccctctcttttccatgtcttcatcttctaaatctcatacatcgtaaccctaatttcgtttacaatcaccaatggacggcggcttcactggtggagaaccggtagggagggcgtccacgtcctatgaagctgcaggaggacggcggaggtttacggtggagctcaggccgggtgagaccacaattgtgtcgtggaagaagcttctcaaggacgctaataagtctaatgttaatgttgtcggttctggtccaacgatgatgccggttggagctcctgctagcattcaaactccagtgccgcatcctgctctcgaggctcgattagctccgggacaacctgctgataaggaagtcaaggatgcacctcctggaaatcgtttaaatgctgtgatagaaaagattgaacgcttatatgtgggcaaacaaagtgatgatgaggaagatcttaatgatttcccagatgacgatgaatatgacactgaagattctttcatagatgatactgagctggatgaatattttcaggttgataactcagcaataaagcatgatggtttctttgtcaatcgtggaaagttggagcgcattgagccagtttcaccaaagaatcagcaaccaaaaaagaggagaagaaaagatctggcaaaaagccatgttggggatgatgatggacacaatccaagtaaacctgntaaagtcggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="26479" stop="18551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26179" g_stop="25814" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25813" i_stop="22041" i_length="3773">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22040" g_stop="21954" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="453" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21953" i_stop="21876" i_length="78">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21875" g_stop="21783" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="546" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21782" i_stop="21623" i_length="160">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21622" g_stop="21546" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="623" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21545" i_stop="18967" i_length="2579">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18966" g_stop="18851" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="739" r_length="116" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E578212" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26179" e_stop="25814"/>
          <exon e_start="22040" e_stop="21954"/>
          <exon e_start="21875" e_stop="21783"/>
          <exon e_start="21622" e_stop="21546"/>
          <exon e_start="18966" e_stop="18851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCGGTAGGTTGTGTTAATCCTGACTTTTTTGTTTATGTCAACTTCAGTTAATTCACCTGAAGTCATAGTGTAGAATACTACCAATCAGTGTTATTTCTCGGTTTGTTGTGTTGAAACTTAATTCTAGGAGAAATAATGCTGTAGCATTTGAGCTGCATAAACATCACCAGACATGATTGTAGTCATGCACTATTAATACTGTCAGTTAGGCTTCTTGCTTTGTAACTGGTGGGCAGAGGGGATCTTAGGTATATATATTAACATACTGGTGGGTGAAGGGAATGATTGGTTTAGCATCTGAATATAGCCAAGATCAAATTACTCCCTGTAGCCAATTCCTTTGAGTTGTATGGGAAATTTAAGAGTACATTGAGAGAAGTGGTCCTTGAGTGGCTCTGCTCACCTGTCTCAGTTGTTTCTGTTCTTGGATCCGTGTGCAAAAACCAAACTCGAGTGCTTCCAGAGTATGAAGGTGGTTTCTTTAGTGAAGCTGTACCCACAGCATATTGGTGATAAATATAGTAGTCACAGGTGAAGTGCATGGTTTCATAGGGGAACTGTTATGGACATTATCTTTCATGTGATTTATTTGATGAAGTATTGGCAATATTTGTCATTAAAATGACAAAATATTTATAGTATTTTGGAATAGTAAAGGATTCCGGGATCTTAGAAGCTGGTTTGGACGCTCCATGATGTTGTCCTCTGGGGTGATGTGAAATCTGAATACAATGAGTTGGGAAGATATCATCACTGTAACATGCTGTGTTCTTATGACCTCTTTAAGTGGAGTTCCCTTTCGTGATCCAGATGAATTATCAAGCTGCAGAGCTTAATAATGTGCTTCAGTTGACACATGTTTGATAAATTTGATATATTCTCAAAAAAGAAAATGTAGCACAAAAGAGGGTTCCATGACTCTTCCCTTCAAGTGTTACAGGAGTTGCCTTCTTTAGGTAGCTCTTACTCCTATTTTAATATTTACTTACTTAAAAATGGTGGAGAATAATACCCCCTTGCATATGGTGGTCATTCTGGAGGTAGAGAAATGGAAGGTGTTTTGAAGACAAAATCAGACCAGTGCATGATGTGAAATGGAACTGCCTGGAGACTTTAATTTTTTGGTGTAAACATAACTGTATAGAGGAAATAGAGGAGTTAGTAGAATTTCTAGGAGCTTTGTAAAGCTAGAGTCTACTTGTTTTGTAACTTGTTTCTGATTGTGGCTAGCATTCCCGATGCTGAAGAATACAACAGTACTAATCCTCAAAGCCTATTAGAGATCTTCTTGAAATTTAAACTTAGTGATCTGATTTATAAGTCATGCTAAAATTTTATTACAGAAATTTGGGTTGGAACTATATTTGACTCAAGATGGGGATTGTTATCTAACTAAAACTACTATACTAAGAAGAGTTATAGCAAACAATGTAAATTATTATTGTAGTATTTTCAGTCTTCTTTTATTGCTTAAATTTCTGTGACTTTGCAATGGTGTTAATGGAGGCATCCTCGAGGCACAATTATGCCTTGCTTTCAAATTGGGTTCTTTATAAGCTTTGTAAGCGCACTTAGATTAGGCTCCAAAGTGTTGCAATGTGAGGTTTTGGGTGTCACTAAATGTTGAAGATATATGGGAAAAAACTTATATAAATTGGTATGCAAGGGTTTGACCTAATGATTGATGGGGCTGGAATGGACTATGGGATACCGTGTCTCAAGCACTACAGAGGCAAAGAAAGTTCTGTTGTCTAAGCCTTAGTGGACAAAGTTACTAGTGAAAGGCAGCACATATCCAAACTGATAAATCAAGGTGTGTGCAAGCTGGTTTAGACGCCATCCTTGCAAACACATACACACACATTATAGCTTATTGTTGAACATCTGCCATTTGAGTTCCAGTGATGATGTTCTTTCTTTTCAAAATATAGCGGATAAGGAATAGAATATAATCTTTCTGTTACATTTTTTAAAAATCTTCAGTCGTAACAATCCAGATATCGGGCATTTGAAGTACAAAAGAGTTACCCTTTGGGGTGGCCCAATGGTTTGAGCTCGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGGGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCAAGCCTGGTGTGGGTTACTTCTTTTATGTGATTTGCGAGCTATTGCATAGGAGTGGGGGTTTTACCCTATGCGCACCCAAAGGGTATCGACTGCTGGTTTTCCCTGGTCATAAAAAAAAAGTATGAAAGAGTTAGATCATTCTTCCTAATCATCTCTTCATGTTCGGTCCTTTTCTTATTTTAAAATCCAATAGGTGGTATGAGCCACAATTGGTCTTGTAGGTTCTGTGAAAGAAAAAAAGATTAAAGCCTTCAACTTTTTGAACTCGAAATGTCAACCTACAATAGCCTTTCTTTGTCACCTCCATGTACTCTCATCAGTGAGAGTTACTTAATTTGGTCATCACCCATGCAAACTTACCTAGAAACCTTTGATTTTGATAGATTGCCAAGAGATTCTACCTTGGCACAAATCAAGGCTGACACTGAAGAAACCAATAGGTCCAAAGTCAAGTTAGTTAGTTAGAATTCGTAGGAATATAAGACCGCCAATGAAGCTTGGGACAAATTTGAAGTGGAATATTACGGAAATGATCAAACTAGGCAAATGGAGGTTTTGAATATGGAAAGGGACCTTGAAGCTCTAAGCACGGTGGAAAATGAGGCTATTAGCAAATGCTCTAATAGAATTTCCTTGATCGTTTTTGTGAGAATTTCCCTGATACAGAATTGTGGGGAAGGTTCTATCGACACTCTATAAAAAAATTGGGTCTAAGATTTTATCTCTAAAAGAGTCCAAGGATCTTAACTATATTTCAATTGCAGAGCTAATGATTCCTCTTCAAGCTCAAGAGAAAATGGGCTTTTGAGGCAAGAAAATGTTATAAGTCTCATGCACAAAACCAGCAAGGAAGCGAAGCTAGACAAAAATATAACAAGAAATAGAATGACAAAATAGAATCTTGTATTCTCACATTACAAGCATTGTAAATAGACCCCACACATGAAAAAATATTGGTGGAGGCCTGGTGCAATCTGTGGTACATTTATTCTTTATTTAGTTAGGTAATGCAATATAAGGCAGGATCAAGGCTCTTGAAAGCAATCAACAAGTAAAAACAACTGAGTCAGAAATTCTGGAAGAGGATCTCTTTGTAGTCCCATGCTTTAGCAACAAGGACACAGAAACCACTTGGTTCATTGACAACGAATGCATAAATAATATAACTTTTAATGCAACAATGTTCATGACTTTGATAAAAGCTCTATAATTACAATGATAATTGGGAATGGGGATGTTTTGGAAGTGAAAGGTGAAGGTACAGTTGAAGTTAAAACTTATATTCCGTCATACTTATTGCTTTGCTGATGTATTATATGTATCTGAACTCAATAAAAAATTGCTGACTGTTGGGTAAATGACGGAGAAGGGACATGATTTTAAATTTAAGATATTATTAGAGTTGTGCTGTAGTATATCTTGGTGATCTCTATGATTAGAATTATTTATTTCAAAAAACATTTTTTTGGATTAAGTATTTAAAGATCTTTTTAAAAAGGAACATCCTAAAAGGGGAAATAGTGAAATCTGCAAGGACTGTTTGGTCAAGATTGCATGTTGCAACTCTATTACAAAGCATTACTTTGCTTATTCTGGGAACATGTGTTTGATAAATTTTATGCGTATTATCAATGCTTTGTAGGGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTTATATGTGGTATGCATTTTATTGTTTACTCGTTACATTAGACTTGTCAGTGCACTTGATCTGCTAAATAACTATTATGCCTTTTAGGGCAAACAAAGTGATGATGAGGAAGATCTTAATGATTTCCCAGATGACGATGAATATGACACTGAAGATTCTTTCATAGATGATACTGAGCTGGTCGGTCACATCAAGTTCCTTAACCTTATATACCTTATACAAATATGTGTTATTTTGTATCCGAATGATTTACAAGCATAGTCAATATTTTGCAACTTTGTGCAGGCGGCATCTATATGTTGTAGTCAAAGTACTTAGTACATTGTTTCTGGTTATGCAGGATGAATATTTTCAGGTTGATAACTCAGCAATAAAGCATGATGGTTTCTTTGTCAATCGTGGAAAGTTGGAGCGCATGTGAGTTTTTTCTTGAGATTTTTAAATAATATGACATGTCTAAACACCACTGTATATAATTTAACCAATTGTTCACCCTTTATCCGGCATCCAAATTTAGTTTTTGTATCTATTTTAAAGTTTTAAATTAGTTTAAAAACAATGTTTGTTTTGATTGTTACCTTTTTTTTGGTATCATATCGTTTCAATCCATTGTTAAGTAATGATGAAAAGTCTCATTATGAACTTTACCTTACTCAAAAAAAGAAGAAGAGAAGTTTCAGTATATGTAACAATTGATTTGGTTTGATCTCATCATTACCTTAATATTTCTTTTCATTTTGTCTTTCTTTATTATTTATTAATCTTATTTTATCTTTTACATTACCTTTTCATTTTAGCTCCGTCTCTTATCCTACTTTCCTTGTGGGTTTATCATTCAAATTGCCGACGTGTGACATTATGTTACGACGGAGAATGATATAATCTATCCAAACATCACGTTATAATACAACACAACGTAGTACATACGTCATAAAACAATACGTGACAAAATTACTCCGCAATTTCATGTTTCAAGTGATTGGATGATTATGCTACATGTGCTTGTGCAACCGAGGATCTATCAGTTACATGTTTCTTCGTTGCACTGTTGCCACCGACCTTTGGAACATGCTCTTTTCTCTCTTTGCTAACATAAAGCGAGGCGAAGCGCTTAATAGGTTTCAAGCCTCACATCAGGGCTTGTTATGACCCACATATACTCTTACGTTTTACCATAAGAAGTAGTTTTTTATTCTCTCCCCAATTCAAGTTCACCCCCAAATCTGGTAATCCCTGCAAGTATTGATGGTTCCTCTTTTACGTGATGTTCAATATTCTCTTAATGTTGCTTTCTTCTTATTCTTCTTGGATTTAATCCGACTCTTCTCTTCTTCTTTATTTCTTGTTTACTCCTTCCCTGGTTTCTTCTCCTCATGTACGACTCTTTTTCTTTTGCCACTTTTACTTTTGGGGTTCTTTTTTACTCTTCTCTCTCATTCTGTCAAAATAATTCCGTTCCAATTTTTCTTGTTTGTTCTATCTATTTCTTGTTTATATTTTGAATTTTTTATTCATCATGTTCTAGTAATGTTTAATTAGGAAAGGGAATCATTTTTTAAGAAGGTAAGTAGGTTTATATTGCAAAAGAGAAACTTGCCAGCATCAAGTTGGTGCTAATAGGATAAAAAACCCACCCGCTTGCACGGAATCAATGAAATCTAACATACTATCTTCATTCTTTATAATCTACACCAAAATGCTAAAAGCCGTAAACAAAAGTGGAGCCAGGTTTTGATGTTTATGGATTCGGATAGGGGTGTTAAATGAGCAGGTCGAGTCAGATATGGGCTGGTTGAAAATGAATTGGGTGAAAACGAATAATTTATCCAGCCTACCTATTATCAATATTCAATATATATTTTTAAAAAGGTAACAAGTCCTAGCCAACTTCTTTCTGAAAATATGATTTTGGAAATGATAGTCTCCTTTTGTTTTAGAGAGGAATTGTCTTTTGCAACAAAGGAAAAAATGATGCAGAGTGGGTTTAGGGAGGAAATGTCTTATCTTCTTTAAAAGGAGAGTAAAACATATTACCTGTAAAGGAGAAGACTTTGGGAGCAAGTGGGTTTCGAACCCACATATCTGCAATACAAAGCTTTACTACCCTAATCCATATATATATATATAATTTTTTATACTAACGCTTGTACTATAGGGTCCACGCAAAAACTATTGGGTTCGTCCAAACCCGCATAATGTACTGTAGCTCTCCTGGCCATAAACAATTGAAGTTAAGTTGTTGTACACTAATTGACTTTCCTTTCAAAACATAGTTAATTTCTTTCCTTGTGTGAGGAGATTAGGTTCTTGCAATATTGGAAATGTTTGCTTTTGTCTAATCCTGTTATTAAAGGTTTGGTTAAGCCCCGAAGCAAGGTCCACAACGTGTTGAGCACTTTACCTTGCTTAATTTGCTCCTTAGAGTTGTCATAAGGTTCTAAAACATACTTTTCCTTTCCAATGAACCTCTTTCTAGAGACAACACTAAACAGTTGATATTTCACTTTATCGTAATTATTATTCAATTTCTTTGTTCATATATTTGTCATTCATGCTTATAAATTATTAGTTTTGGACTAAACATATATATATTTGGACTTTTTCTCCCTTGGTGCCTTTTTTCATTGAAGTTCATACTTTATTTGCGTTTTGCGCTTAAGCCCCAACAGACCTTGGAGTTTTTTTTATGCTATTTACTTTTTCTATGGTTTAAACCTCTGCATCTCTTTCCCTAAGAAATTCTCTTTCCTTGTTCAGTAAGTTATGTTTTCCCTTTGATTTTGGAATTCAGATGTATATTTCTTTTGGGACTTTGGTTTAGCTTCTTTTTCTCCATACGGATGTCCTTGTTCTTTCCCTGGTGATAGGTTGTTCATAACACTAGTGAATTTGTAATTATGGCTGCAAAATGGGAAGGATTTATTTGCTAATTTTTCTTAGAAATGAAAACTGGTACTTTCATTTGGGCACTTCTAACTGACATGATTTTCTTTTAGTGAGCCAGTTTCACCAAAGAATCAGCAACCAAAAAAGAGGAGAAGAAAAGATCTGGCAAAAAGCCATGTTGGGGATGATGATGGACACAATCCAAGTAAACCTGTAAAAGTCGGAA</genome_strand>
        <mrna_strand>CAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTTATATGTG..............................................................................GGCAAACAAAGTGATGATGAGGAAGATCTTAATGATTTCCCAGATGACGATGAATATGACACTGAAGATTCTTTCATAGATGATACTGAGCTG................................................................................................................................................................GATGAATATTTTCAGGTTGATAACTCAGCAATAAAGCATGATGGTTTCTTTGTCAATCGTGGAAAGTTGGAGCGCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCAGTTTCACCAAAGAATCAGCAACCAAAAAAGAGGAGAAGAAAAGATCTGGCAAAAAGCCATGTTGGGGATGATGATGGACACAATCCAAGTAAACCTGNTAAAGTCGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306941" ref_strand="+" ref_description="SGN-E306941 [cLEY-11-K6]">
      <seq>tcaattctaaaattttctcttttcaatttggtaccaaattttcctcttctttaggggttcgaatcagtgtttccctctcttttccatgtcttcatcttctaaatctcatacatcgtaaccctaatttcgtttacaatcaccaatggacggcggcttcactggtggagaaccggtagggagggcgtccacgtcctatgaagctgcaggaggacggcggaggtttacggtggagctcaggccgggtgagaccacaattgtgtcgtggaagaagcttctcaaggacgctaataagtctaatgttaatgttgtcggttctggtccaacgatgatgccggttggagctcctgctagcattcaaactccagtgccgcatcctgctctcgaggctcgattagctccgggacaacctgctgataaagaagtcaaggatgcacctcctggaaatcgtttaaatgctgtgatagaaaagattgaacgcttatatgtgggcaaacaaagtgatgatgaggaagatcttaatgatttcccagatgacgatgaatatgacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="26513" stop="21513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26213" g_stop="25814" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25813" i_stop="22041" i_length="3773">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22040" g_stop="21954" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="487" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21953" i_stop="21876" i_length="78">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21875" g_stop="21813" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="550" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E306941" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26213" e_stop="25814"/>
          <exon e_start="22040" e_stop="21954"/>
          <exon e_start="21875" e_stop="21813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCTAAAATTTTCTCTTTTCAATTTGGTACCAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCGGTAGGTTGTGTTAATCCTGACTTTTTTGTTTATGTCAACTTCAGTTAATTCACCTGAAGTCATAGTGTAGAATACTACCAATCAGTGTTATTTCTCGGTTTGTTGTGTTGAAACTTAATTCTAGGAGAAATAATGCTGTAGCATTTGAGCTGCATAAACATCACCAGACATGATTGTAGTCATGCACTATTAATACTGTCAGTTAGGCTTCTTGCTTTGTAACTGGTGGGCAGAGGGGATCTTAGGTATATATATTAACATACTGGTGGGTGAAGGGAATGATTGGTTTAGCATCTGAATATAGCCAAGATCAAATTACTCCCTGTAGCCAATTCCTTTGAGTTGTATGGGAAATTTAAGAGTACATTGAGAGAAGTGGTCCTTGAGTGGCTCTGCTCACCTGTCTCAGTTGTTTCTGTTCTTGGATCCGTGTGCAAAAACCAAACTCGAGTGCTTCCAGAGTATGAAGGTGGTTTCTTTAGTGAAGCTGTACCCACAGCATATTGGTGATAAATATAGTAGTCACAGGTGAAGTGCATGGTTTCATAGGGGAACTGTTATGGACATTATCTTTCATGTGATTTATTTGATGAAGTATTGGCAATATTTGTCATTAAAATGACAAAATATTTATAGTATTTTGGAATAGTAAAGGATTCCGGGATCTTAGAAGCTGGTTTGGACGCTCCATGATGTTGTCCTCTGGGGTGATGTGAAATCTGAATACAATGAGTTGGGAAGATATCATCACTGTAACATGCTGTGTTCTTATGACCTCTTTAAGTGGAGTTCCCTTTCGTGATCCAGATGAATTATCAAGCTGCAGAGCTTAATAATGTGCTTCAGTTGACACATGTTTGATAAATTTGATATATTCTCAAAAAAGAAAATGTAGCACAAAAGAGGGTTCCATGACTCTTCCCTTCAAGTGTTACAGGAGTTGCCTTCTTTAGGTAGCTCTTACTCCTATTTTAATATTTACTTACTTAAAAATGGTGGAGAATAATACCCCCTTGCATATGGTGGTCATTCTGGAGGTAGAGAAATGGAAGGTGTTTTGAAGACAAAATCAGACCAGTGCATGATGTGAAATGGAACTGCCTGGAGACTTTAATTTTTTGGTGTAAACATAACTGTATAGAGGAAATAGAGGAGTTAGTAGAATTTCTAGGAGCTTTGTAAAGCTAGAGTCTACTTGTTTTGTAACTTGTTTCTGATTGTGGCTAGCATTCCCGATGCTGAAGAATACAACAGTACTAATCCTCAAAGCCTATTAGAGATCTTCTTGAAATTTAAACTTAGTGATCTGATTTATAAGTCATGCTAAAATTTTATTACAGAAATTTGGGTTGGAACTATATTTGACTCAAGATGGGGATTGTTATCTAACTAAAACTACTATACTAAGAAGAGTTATAGCAAACAATGTAAATTATTATTGTAGTATTTTCAGTCTTCTTTTATTGCTTAAATTTCTGTGACTTTGCAATGGTGTTAATGGAGGCATCCTCGAGGCACAATTATGCCTTGCTTTCAAATTGGGTTCTTTATAAGCTTTGTAAGCGCACTTAGATTAGGCTCCAAAGTGTTGCAATGTGAGGTTTTGGGTGTCACTAAATGTTGAAGATATATGGGAAAAAACTTATATAAATTGGTATGCAAGGGTTTGACCTAATGATTGATGGGGCTGGAATGGACTATGGGATACCGTGTCTCAAGCACTACAGAGGCAAAGAAAGTTCTGTTGTCTAAGCCTTAGTGGACAAAGTTACTAGTGAAAGGCAGCACATATCCAAACTGATAAATCAAGGTGTGTGCAAGCTGGTTTAGACGCCATCCTTGCAAACACATACACACACATTATAGCTTATTGTTGAACATCTGCCATTTGAGTTCCAGTGATGATGTTCTTTCTTTTCAAAATATAGCGGATAAGGAATAGAATATAATCTTTCTGTTACATTTTTTAAAAATCTTCAGTCGTAACAATCCAGATATCGGGCATTTGAAGTACAAAAGAGTTACCCTTTGGGGTGGCCCAATGGTTTGAGCTCGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGGGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCAAGCCTGGTGTGGGTTACTTCTTTTATGTGATTTGCGAGCTATTGCATAGGAGTGGGGGTTTTACCCTATGCGCACCCAAAGGGTATCGACTGCTGGTTTTCCCTGGTCATAAAAAAAAAGTATGAAAGAGTTAGATCATTCTTCCTAATCATCTCTTCATGTTCGGTCCTTTTCTTATTTTAAAATCCAATAGGTGGTATGAGCCACAATTGGTCTTGTAGGTTCTGTGAAAGAAAAAAAGATTAAAGCCTTCAACTTTTTGAACTCGAAATGTCAACCTACAATAGCCTTTCTTTGTCACCTCCATGTACTCTCATCAGTGAGAGTTACTTAATTTGGTCATCACCCATGCAAACTTACCTAGAAACCTTTGATTTTGATAGATTGCCAAGAGATTCTACCTTGGCACAAATCAAGGCTGACACTGAAGAAACCAATAGGTCCAAAGTCAAGTTAGTTAGTTAGAATTCGTAGGAATATAAGACCGCCAATGAAGCTTGGGACAAATTTGAAGTGGAATATTACGGAAATGATCAAACTAGGCAAATGGAGGTTTTGAATATGGAAAGGGACCTTGAAGCTCTAAGCACGGTGGAAAATGAGGCTATTAGCAAATGCTCTAATAGAATTTCCTTGATCGTTTTTGTGAGAATTTCCCTGATACAGAATTGTGGGGAAGGTTCTATCGACACTCTATAAAAAAATTGGGTCTAAGATTTTATCTCTAAAAGAGTCCAAGGATCTTAACTATATTTCAATTGCAGAGCTAATGATTCCTCTTCAAGCTCAAGAGAAAATGGGCTTTTGAGGCAAGAAAATGTTATAAGTCTCATGCACAAAACCAGCAAGGAAGCGAAGCTAGACAAAAATATAACAAGAAATAGAATGACAAAATAGAATCTTGTATTCTCACATTACAAGCATTGTAAATAGACCCCACACATGAAAAAATATTGGTGGAGGCCTGGTGCAATCTGTGGTACATTTATTCTTTATTTAGTTAGGTAATGCAATATAAGGCAGGATCAAGGCTCTTGAAAGCAATCAACAAGTAAAAACAACTGAGTCAGAAATTCTGGAAGAGGATCTCTTTGTAGTCCCATGCTTTAGCAACAAGGACACAGAAACCACTTGGTTCATTGACAACGAATGCATAAATAATATAACTTTTAATGCAACAATGTTCATGACTTTGATAAAAGCTCTATAATTACAATGATAATTGGGAATGGGGATGTTTTGGAAGTGAAAGGTGAAGGTACAGTTGAAGTTAAAACTTATATTCCGTCATACTTATTGCTTTGCTGATGTATTATATGTATCTGAACTCAATAAAAAATTGCTGACTGTTGGGTAAATGACGGAGAAGGGACATGATTTTAAATTTAAGATATTATTAGAGTTGTGCTGTAGTATATCTTGGTGATCTCTATGATTAGAATTATTTATTTCAAAAAACATTTTTTTGGATTAAGTATTTAAAGATCTTTTTAAAAAGGAACATCCTAAAAGGGGAAATAGTGAAATCTGCAAGGACTGTTTGGTCAAGATTGCATGTTGCAACTCTATTACAAAGCATTACTTTGCTTATTCTGGGAACATGTGTTTGATAAATTTTATGCGTATTATCAATGCTTTGTAGGGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTTATATGTGGTATGCATTTTATTGTTTACTCGTTACATTAGACTTGTCAGTGCACTTGATCTGCTAAATAACTATTATGCCTTTTAGGGCAAACAAAGTGATGATGAGGAAGATCTTAATGATTTCCCAGATGACGATGAATATGACACT</genome_strand>
        <mrna_strand>TCAATTCTAAAATTTTCTCTTTTCAATTTGGTACCAAATTTTCCTCTTCTTTAGGGGTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAACCTGCTGATAAAGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTTATATGTG..............................................................................GGCAAACAAAGTGATGATGAGGAAGATCTTAATGATTTCCCAGATGACGATGAATATGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390711" ref_strand="+" ref_description="SGN-E390711 [TUS-46-N14]">
      <seq>ttcaattctaaaattttctcttttcaatttggtaccaaattttcctcttctttagggtttcgaatcagtgtttccctctcttttccatgtcttcatcttctaaatctcatacatcgtaaccctaatttcgtttacaatcaccaatggacggcggcttcactggtggagaaccggtagggagggcgtccacgtcctatgaagctgcaggaggacggcggaggtttacggtggagctcaggccgggtgagaccacaattgtgtcgtggaagaagcttctcaaggacgctaataagtctaatgttaatgttgtcggttctggtccaacgatgatgccggttggagctcctgctagcattcaaactccagtgccgcatcctgctctcgaggctcgattatctccgggacaacctgctgataaggaagtcaaggatgcacctcctggaaatcgtttaaatgctgtgatagaaaaaattgaacgcttaatatgtggtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="26514" stop="21652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26214" g_stop="25814" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25813" i_stop="22041" i_length="3773">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22040" g_stop="21954" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="489" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21953" i_stop="21876" i_length="78">
            <donor d_prob="0.917" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21875" g_stop="21871" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="494" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E390711" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26214" e_stop="25814"/>
          <exon e_start="22040" e_stop="21954"/>
          <exon e_start="21875" e_stop="21871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTCTAAAATTTTCTCTTTTCAATTTGGTACCAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCGGTAGGTTGTGTTAATCCTGACTTTTTTGTTTATGTCAACTTCAGTTAATTCACCTGAAGTCATAGTGTAGAATACTACCAATCAGTGTTATTTCTCGGTTTGTTGTGTTGAAACTTAATTCTAGGAGAAATAATGCTGTAGCATTTGAGCTGCATAAACATCACCAGACATGATTGTAGTCATGCACTATTAATACTGTCAGTTAGGCTTCTTGCTTTGTAACTGGTGGGCAGAGGGGATCTTAGGTATATATATTAACATACTGGTGGGTGAAGGGAATGATTGGTTTAGCATCTGAATATAGCCAAGATCAAATTACTCCCTGTAGCCAATTCCTTTGAGTTGTATGGGAAATTTAAGAGTACATTGAGAGAAGTGGTCCTTGAGTGGCTCTGCTCACCTGTCTCAGTTGTTTCTGTTCTTGGATCCGTGTGCAAAAACCAAACTCGAGTGCTTCCAGAGTATGAAGGTGGTTTCTTTAGTGAAGCTGTACCCACAGCATATTGGTGATAAATATAGTAGTCACAGGTGAAGTGCATGGTTTCATAGGGGAACTGTTATGGACATTATCTTTCATGTGATTTATTTGATGAAGTATTGGCAATATTTGTCATTAAAATGACAAAATATTTATAGTATTTTGGAATAGTAAAGGATTCCGGGATCTTAGAAGCTGGTTTGGACGCTCCATGATGTTGTCCTCTGGGGTGATGTGAAATCTGAATACAATGAGTTGGGAAGATATCATCACTGTAACATGCTGTGTTCTTATGACCTCTTTAAGTGGAGTTCCCTTTCGTGATCCAGATGAATTATCAAGCTGCAGAGCTTAATAATGTGCTTCAGTTGACACATGTTTGATAAATTTGATATATTCTCAAAAAAGAAAATGTAGCACAAAAGAGGGTTCCATGACTCTTCCCTTCAAGTGTTACAGGAGTTGCCTTCTTTAGGTAGCTCTTACTCCTATTTTAATATTTACTTACTTAAAAATGGTGGAGAATAATACCCCCTTGCATATGGTGGTCATTCTGGAGGTAGAGAAATGGAAGGTGTTTTGAAGACAAAATCAGACCAGTGCATGATGTGAAATGGAACTGCCTGGAGACTTTAATTTTTTGGTGTAAACATAACTGTATAGAGGAAATAGAGGAGTTAGTAGAATTTCTAGGAGCTTTGTAAAGCTAGAGTCTACTTGTTTTGTAACTTGTTTCTGATTGTGGCTAGCATTCCCGATGCTGAAGAATACAACAGTACTAATCCTCAAAGCCTATTAGAGATCTTCTTGAAATTTAAACTTAGTGATCTGATTTATAAGTCATGCTAAAATTTTATTACAGAAATTTGGGTTGGAACTATATTTGACTCAAGATGGGGATTGTTATCTAACTAAAACTACTATACTAAGAAGAGTTATAGCAAACAATGTAAATTATTATTGTAGTATTTTCAGTCTTCTTTTATTGCTTAAATTTCTGTGACTTTGCAATGGTGTTAATGGAGGCATCCTCGAGGCACAATTATGCCTTGCTTTCAAATTGGGTTCTTTATAAGCTTTGTAAGCGCACTTAGATTAGGCTCCAAAGTGTTGCAATGTGAGGTTTTGGGTGTCACTAAATGTTGAAGATATATGGGAAAAAACTTATATAAATTGGTATGCAAGGGTTTGACCTAATGATTGATGGGGCTGGAATGGACTATGGGATACCGTGTCTCAAGCACTACAGAGGCAAAGAAAGTTCTGTTGTCTAAGCCTTAGTGGACAAAGTTACTAGTGAAAGGCAGCACATATCCAAACTGATAAATCAAGGTGTGTGCAAGCTGGTTTAGACGCCATCCTTGCAAACACATACACACACATTATAGCTTATTGTTGAACATCTGCCATTTGAGTTCCAGTGATGATGTTCTTTCTTTTCAAAATATAGCGGATAAGGAATAGAATATAATCTTTCTGTTACATTTTTTAAAAATCTTCAGTCGTAACAATCCAGATATCGGGCATTTGAAGTACAAAAGAGTTACCCTTTGGGGTGGCCCAATGGTTTGAGCTCGGGACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGGGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCAAGCCTGGTGTGGGTTACTTCTTTTATGTGATTTGCGAGCTATTGCATAGGAGTGGGGGTTTTACCCTATGCGCACCCAAAGGGTATCGACTGCTGGTTTTCCCTGGTCATAAAAAAAAAGTATGAAAGAGTTAGATCATTCTTCCTAATCATCTCTTCATGTTCGGTCCTTTTCTTATTTTAAAATCCAATAGGTGGTATGAGCCACAATTGGTCTTGTAGGTTCTGTGAAAGAAAAAAAGATTAAAGCCTTCAACTTTTTGAACTCGAAATGTCAACCTACAATAGCCTTTCTTTGTCACCTCCATGTACTCTCATCAGTGAGAGTTACTTAATTTGGTCATCACCCATGCAAACTTACCTAGAAACCTTTGATTTTGATAGATTGCCAAGAGATTCTACCTTGGCACAAATCAAGGCTGACACTGAAGAAACCAATAGGTCCAAAGTCAAGTTAGTTAGTTAGAATTCGTAGGAATATAAGACCGCCAATGAAGCTTGGGACAAATTTGAAGTGGAATATTACGGAAATGATCAAACTAGGCAAATGGAGGTTTTGAATATGGAAAGGGACCTTGAAGCTCTAAGCACGGTGGAAAATGAGGCTATTAGCAAATGCTCTAATAGAATTTCCTTGATCGTTTTTGTGAGAATTTCCCTGATACAGAATTGTGGGGAAGGTTCTATCGACACTCTATAAAAAAATTGGGTCTAAGATTTTATCTCTAAAAGAGTCCAAGGATCTTAACTATATTTCAATTGCAGAGCTAATGATTCCTCTTCAAGCTCAAGAGAAAATGGGCTTTTGAGGCAAGAAAATGTTATAAGTCTCATGCACAAAACCAGCAAGGAAGCGAAGCTAGACAAAAATATAACAAGAAATAGAATGACAAAATAGAATCTTGTATTCTCACATTACAAGCATTGTAAATAGACCCCACACATGAAAAAATATTGGTGGAGGCCTGGTGCAATCTGTGGTACATTTATTCTTTATTTAGTTAGGTAATGCAATATAAGGCAGGATCAAGGCTCTTGAAAGCAATCAACAAGTAAAAACAACTGAGTCAGAAATTCTGGAAGAGGATCTCTTTGTAGTCCCATGCTTTAGCAACAAGGACACAGAAACCACTTGGTTCATTGACAACGAATGCATAAATAATATAACTTTTAATGCAACAATGTTCATGACTTTGATAAAAGCTCTATAATTACAATGATAATTGGGAATGGGGATGTTTTGGAAGTGAAAGGTGAAGGTACAGTTGAAGTTAAAACTTATATTCCGTCATACTTATTGCTTTGCTGATGTATTATATGTATCTGAACTCAATAAAAAATTGCTGACTGTTGGGTAAATGACGGAGAAGGGACATGATTTTAAATTTAAGATATTATTAGAGTTGTGCTGTAGTATATCTTGGTGATCTCTATGATTAGAATTATTTATTTCAAAAAACATTTTTTTGGATTAAGTATTTAAAGATCTTTTTAAAAAGGAACATCCTAAAAGGGGAAATAGTGAAATCTGCAAGGACTGTTTGGTCAAGATTGCATGTTGCAACTCTATTACAAAGCATTACTTTGCTTATTCTGGGAACATGTGTTTGATAAATTTTATGCGTATTATCAATGCTTTGTAGGGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTT-ATATGTGGTATGCATTTTATTGTTTACTCGTTACATTAGACTTGTCAGTGCACTTGATCTGCTAAATAACTATTATGCCTTTTAGGGCAA</genome_strand>
        <mrna_strand>TTCAATTCTAAAATTTTCTCTTTTCAATTTGGTACCAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTATCTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAAATTGAACGCTTAATATGTG..............................................................................GTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539198" ref_strand="+" ref_description="SGN-E539198 [TUS-58-N8]">
      <seq>ggaaaggctgcatttgagatcttcaataagtttggggatttaggatgtgcaccaaatgctgatacatactattttaccattgaagcactttctaggcgatcgatttatgattgggcttctactgtttgtgagaagatgcttaatgctgataagttgcctggtgctgagaaagttggaaagattgtttcttttctgtgtaaaggaaataagtgtagagatgcacatctggtttatttgtcggcaaaggagaaaaatattaatctgcctgtatcttctattaagttgttgatcagctctctttgtcgcaaagatgaaggcgttaaacttgcaatggaggtgttggatgagttccccaaagaagagcggaagcatgccattaagtcattctcacatgtcatcaatgggctgtgtagggcaaatgatgtaacaggggaaaagcagctgcgttcctattgcagtgaagacattgacgaggccaaaaacttgctcttaaaaatgatagatgcaggtccaccacctggcaatgcagtctttaatacagttattaatgcgctctccaagaagggagaaatgggagaagctaggaaactattgaaggtgatggagggtagaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="28384" stop="29598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28684" g_stop="29298" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E539198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28684" e_stop="29298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGCTGCATTTGAGATCTTCAATAAGTTTGGGGATTTAGGATGTGCACCAAATGCTGATACATACTATTTTACCATTGAAGCACTTTCTAGGCGATCGATTTATGATTGGGCTTCTACTGTTTGTGAGAAGATGCTTAATGCTGATAAGTTGCCTGGTGCTGAGAAAGTTGGAAAGATTGTTTCTTTTCTGTGTAAAGGAAATAAGTGTAGAGATGCACATCTGGTTTATTTGTCGGCAAAGGAGAAAAATATTAATCTGCCTGTATCTTCTATTAAGTTGTTGATCAGCTCTCTTTGTCGCAAAGATGAAGGCGTTAAACTTGCAATGGAGGTGTTGGATGAGTTCCCCAAAGAAGAGCGGAAGCATGCCATTAAGTCATTCTCACATGTCATCAATGGGCTGTGTAGGGCAAATGATGTAACAGGGGAAAAGCAGCTGCGTTCCTATTGCAGTGAAGACATTGACGAGGCCAAAAACTTGCTCTTAAAAATGATAGATGCAGGTCCACCACCTGGCAATGCAGTCTTTAATACAGTTATTAATGCGCTCTCCAAGAAGGGAGAAATGGGAGAAGCTAGGAAACTATTGAAGGTGATGGAGGGTAGAGGT</genome_strand>
        <mrna_strand>GGAAAGGCTGCATTTGAGATCTTCAATAAGTTTGGGGATTTAGGATGTGCACCAAATGCTGATACATACTATTTTACCATTGAAGCACTTTCTAGGCGATCGATTTATGATTGGGCTTCTACTGTTTGTGAGAAGATGCTTAATGCTGATAAGTTGCCTGGTGCTGAGAAAGTTGGAAAGATTGTTTCTTTTCTGTGTAAAGGAAATAAGTGTAGAGATGCACATCTGGTTTATTTGTCGGCAAAGGAGAAAAATATTAATCTGCCTGTATCTTCTATTAAGTTGTTGATCAGCTCTCTTTGTCGCAAAGATGAAGGCGTTAAACTTGCAATGGAGGTGTTGGATGAGTTCCCCAAAGAAGAGCGGAAGCATGCCATTAAGTCATTCTCACATGTCATCAATGGGCTGTGTAGGGCAAATGATGTAACAGGGGAAAAGCAGCTGCGTTCCTATTGCAGTGAAGACATTGACGAGGCCAAAAACTTGCTCTTAAAAATGATAGATGCAGGTCCACCACCTGGCAATGCAGTCTTTAATACAGTTATTAATGCGCTCTCCAAGAAGGGAGAAATGGGAGAAGCTAGGAAACTATTGAAGGTGATGGAGGGTAGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278660" ref_strand="+" ref_description="SGN-E278660 [cLER-10-L3]">
      <seq>ggatttaggatgtgcaccaaatgctgatacatactattttaccattgaagcactttctaggcgatcgatttatgattgggcttctactgtttgtgagaagatgcttaatgctgataagttttttggtgcggagaaagttggaaagattgtttctttggggtgtaaaggaaataagtgtagagatgcacatctggtttatttgtcggcaaaggagaaaaatattaatctgcctgtatcttctattaagttgttgatcagctctctttgtcgcaaagatgaaggcgttaaacttgcaatggaggtgttggatgagttccccaaagaagagcggaagcatgccattaagtcattctcacatgtcatcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="28419" stop="29387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28719" g_stop="29087" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E278660" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28719" e_stop="29087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTAGGATGTGCACCAAATGCTGATACATACTATTTTACCATTGAAGCACTTTCTAGGCGATCGATTTATGATTGGGCTTCTACTGTTTGTGAGAAGATGCTTAATGCTGATAAGTTGCCTGGTGCTGAGAAAGTTGGAAAGATTGTTTCTTTTCTGTGTAAAGGAAATAAGTGTAGAGATGCACATCTGGTTTATTTGTCGGCAAAGGAGAAAAATATTAATCTGCCTGTATCTTCTATTAAGTTGTTGATCAGCTCTCTTTGTCGCAAAGATGAAGGCGTTAAACTTGCAATGGAGGTGTTGGATGAGTTCCCCAAAGAAGAGCGGAAGCATGCCATTAAGTCATTCTCACATGTCATCAATGG</genome_strand>
        <mrna_strand>GGATTTAGGATGTGCACCAAATGCTGATACATACTATTTTACCATTGAAGCACTTTCTAGGCGATCGATTTATGATTGGGCTTCTACTGTTTGTGAGAAGATGCTTAATGCTGATAAGTTTTTTGGTGCGGAGAAAGTTGGAAAGATTGTTTCTTTGGGGTGTAAAGGAAATAAGTGTAGAGATGCACATCTGGTTTATTTGTCGGCAAAGGAGAAAAATATTAATCTGCCTGTATCTTCTATTAAGTTGTTGATCAGCTCTCTTTGTCGCAAAGATGAAGGCGTTAAACTTGCAATGGAGGTGTTGGATGAGTTCCCCAAAGAAGAGCGGAAGCATGCCATTAAGTCATTCTCACATGTCATCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539195" ref_strand="+" ref_description="SGN-E539195 [TUS-58-N8](-)">
      <seq>ggtgatggagggtagaggtttgaaacctgatgtgtacacttatagtgtaatcatgagtggttatacaaagggaggtgagatggaggaggcctgcaagattttgaatgaagccaaaaagaagcactcctgtctaagtcccgtcacttttcacacaattattcggggctatttcaagctcgaacagtatgacaaggctctggaactattgggagatatgaaggagtatggagttcagcctaatgcggatgaatataacaaatttattcaatctctatgccttaaggctttagattggacaacagcagagaaactgcttgaggagatgaaggagaatggggtgcatctaaatgcaatcacaaagggtctcataagagcagttaaggagttagaacaggaagaagtaggaacaaatgaaataacggctacagcatagtaggtaccctatctctgcctttagctgtagggatgtatcttctgtttcttttttatgttatggtctgagataatagcaggcttaaaactgtaacacctgcattttgtatgatgaacaaccattagaattcttaagaaaggatattttttttgttcattttaaaataatgtttgctgccaaatctcttgagttgaatggaagttccgtaactaagactttcaaaagggaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="28980" stop="30248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29280" g_stop="29939" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="661" polyA_stop="675"/>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E539195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29280" e_stop="29939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATGGAGGGTAGAGGTTTGAAACCTGATGTGTACACTTATAGTGTAATCATGAGTGGTTATACAAAGGGAGGTGAGATGGAGGAGGCCTGCAAGATTTTGAATGAAGCCAAAAAGAAGCACTCCTGTCTAAGTCCCGTCACTTTTCACACAATTATTCGGGGCTATTTCAAGCTCGAACAGTATGACAAGGCTCTGGAACTATTGGGAGATATGAAGGAGTATGGAGTTCAGCCTAATGCGGATGAATATAACAAATTTATTCAATCTCTATGCCTTAAGGCTTTAGATTGGACAACAGCAGAGAAACTGCTTGAGGAGATGAAGGAGAATGGGGTGCATCTAAATGCAATCACAAAGGGTCTCATAAGAGCAGTTAAGGAGTTAGAACAGGAAGAAGTAGGAACAAATGAAATAACGGCTACAGCATAGTAGGTACCCTATCTCTGCCTTTAGCTGTAGGGATGTATCTTCTGTTTCTTTTTTATGTTATGGTCTGAGATAATAGCAGGCTTAAAACTGTAACACCTGCATTTTGTATGATGAACAACCATTAGAATTCTTAAGAAAGGATATTTTTTTTGTTCATTTTAAAATAATGTTTGCTGCCAAATCTCTTGAGTTGAATGGAAGTTCCGTAACTAAGACTTTCAAAAGGG</genome_strand>
        <mrna_strand>GGTGATGGAGGGTAGAGGTTTGAAACCTGATGTGTACACTTATAGTGTAATCATGAGTGGTTATACAAAGGGAGGTGAGATGGAGGAGGCCTGCAAGATTTTGAATGAAGCCAAAAAGAAGCACTCCTGTCTAAGTCCCGTCACTTTTCACACAATTATTCGGGGCTATTTCAAGCTCGAACAGTATGACAAGGCTCTGGAACTATTGGGAGATATGAAGGAGTATGGAGTTCAGCCTAATGCGGATGAATATAACAAATTTATTCAATCTCTATGCCTTAAGGCTTTAGATTGGACAACAGCAGAGAAACTGCTTGAGGAGATGAAGGAGAATGGGGTGCATCTAAATGCAATCACAAAGGGTCTCATAAGAGCAGTTAAGGAGTTAGAACAGGAAGAAGTAGGAACAAATGAAATAACGGCTACAGCATAGTAGGTACCCTATCTCTGCCTTTAGCTGTAGGGATGTATCTTCTGTTTCTTTTTTATGTTATGGTCTGAGATAATAGCAGGCTTAAAACTGTAACACCTGCATTTTGTATGATGAACAACCATTAGAATTCTTAAGAAAGGATATTTTTTTTGTTCATTTTAAAATAATGTTTGCTGCCAAATCTCTTGAGTTGAATGGAAGTTCCGTAACTAAGACTTTCAAAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746215" ref_strand="-" ref_description="SGN-E746215 [GI|47104839]">
      <seq>tttttttttttttttcgtaaatataatcaaactcaaaataaaaatattacaaaaaataaataacaaagtatacataattcataaaaaaaaatgaattcttttttttttgataatggaaaatcaaaggctaattgataacccttgttcagtaatatggaatgactggtggtggtggagatgcgtaggagactccgattaccggtgggagaggaatattttcgtaaaatggtggtggtggtggcggagaagagtaagtgggcgggggaggtgatggtgatggtggcggtggtgatgagtagtagtaagtgggaggaggaggagatggtgatggaggtggtggtgatgagtaggtgtatggtggtgatggttttggttcccaatgtgaattaggaggtggaggtggtggttcgttacaaggtggggtaggtggggttgggtgtgatggtgtttttggatgctcgtatgatggtgttggtggtgatggggtttttgggtgttcgtgtgatggtggagtttttggatgctcgtacgacggtgttggtggtagtggtgatggagtttttggatgttcatacgacggtgttggtggtggtggtggtgatttaggcttgtaagtaggtggtggctcatgatacacggggggtggtggagaataataaactggtggtggtggggacgatggagatgggtggtaatatacaggtgagggtggaggaggtgaatgatgagttacaggtgaaattttgtgagtaggtggtggtggacttctatgttgataggttggggactttttgtaaggtgctggtggaggaagaggagttgatttaggtggcggcggagatcgcttgttatgcgaacccgaagacttccaagtaggtggtggtgggcctcttggctttggttttggttttggctttgtcgaaggagatgtagcaaaagggctataacacttggatttcctacaatcatacggttttgcatcatccgaagagcattctttagcagatctttgattcttctttccaacgatacagttctcctggccgtcaccagatctagtcgcagcacaaactggagcttccccggtgaagtaattgaaggaatacgtaaagttttgcaacctaggaagttggcaaatgctagctggtataaccccagtaagcttgttgtgagccacattcagttcctccacactcctcattttgctcacagttgatggcaatgagccttgaatcttgttgaagctaacatcaaacacggttaacttgttcaacaatccaatctccattggcaaacacccagtgaggttatcattcatcaatatcaactcattcaacgttttccccattttcccaatacttgcgggaatacaccctccaagatcgttattagcaaacacaagaaccgaaacaggagagttacccaagttctccgggatgccaaaacggaatctattgtcattcaaaaacaacgcatccaaatctttatcgaaaagtcctgaaggaactggtccttcaaagtcattaaaccttagatccaaaaacttcaaagaaggtagtgaaagaactaccttaggaaacccaccaacaaacctattattactcaaatcaagctccctaagaagcttcaaatggctaaaggtttttggtacaactccacaaaaacgattcgagttgagatggaaaagaaccagatctgtaagaagaccgagttctgcaactaatgaaccagcaatatcagcatgattaagatcaatgccagctacaactctaatcgaatcatccattaacgaaggagcacaaaacactccaccataggaacacacatttggacctgtccaattagctgtgaagttaaaaggatcagaaaacattgctgttttccaatactgcaacgcgatataagcatcgcgagtccttgagttttcaaaactcaacttactagcattagccttaatgtcatctaatccgatatcgctatcaccttcttgtcctaccacatacgagatctggtaagacaaaagagtaataacgaaaaaagaaattaatacgccccggctaggaggccgcattgctgaatctgatagagattttctagctatgaagaagaaaatgaagtttttgttttttcacaatgtgttgttgaatgaaattgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="40006" stop="37127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39716" g_stop="39279" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39278" i_stop="39147" i_length="132">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39146" g_stop="37426" g_length="1721"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="2159" r_length="1721" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E746215" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>2159</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746215" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39716" e_stop="39279"/>
          <exon e_start="39146" e_stop="37426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCCCAATTTTTCATAAATATAATCAAACTCAAAATAAAAATATTACAAAAAATAAATAACAAAGTATACATAATTCATAAAAAAAAATGAATTCTTTTTTTTTTGATAATGGAAAATCAAAGGCTAATTGATAACCCTTGTTCAGTAATATGGAATGACTGGTGGTGGTGGAGATGCGTAGGAGACTCCGATTACCGGTGGGAGAGGAATATTTTCGTAAAATGGTGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGAGGAGGAGGAGATGGTGATGGAGGTGGTGGTGATGAGTAGGTGTATGGTGGTGATGGTTTTGGTTCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGTGTGATGGAGTTTTTGGGTGTTCGTATGATGGTGTTGGTGGTGGTGGTGGTGATTGGGGTTGTGGATGCTCGTATGATGGTGTTGGTGGTGGTGGTGATGGGGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGTGGTGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTGATAGGTTGGGGACTTTTTGTAAGGTGCTGGTGGAGGAAGAGGAGTTGATTTAGGTGGCGGCGGAGATCGCTTGTTATGCGAACCCGAAGACTTCCAAGTAGGTGGTGGTGGGCCTCTTGGCTTTGGTTTTGGTTTTGGCTTTGTCGAAGGAGATGTAGCAAAAGGGCTATAACACTTGGATTTCCTACAATCATACGGTTTTGCATCATCCGAAGAGCATTCTTTAGCAGATCTTTGATTCTTCTTTCCAACGATACAGTTCTCCTGGCCGTCACCAGATCTAGTCGCAGCACAAACTGGAGCTTCCCCGGTGAAGTAATTGAAGGAATACGTAAAGTTTTGCAACCTAGGAAGTTGGCAAATGCTAGCTGGTATAACCCCAGTAAGCTTGTTGTGAGCCACATTCAGTTCCTCCACACTCCTCATTTTGCTCACAGTTGATGGCAATGAGCCTTGAATCTTGTTGAAGCTAACATCAAACACGGTTAACTTGTTCAACAATCCAATCTCCATTGGCAAACACCCAGTGAGGTTATCATTCATCAATATCAACTCATTCAACGTTTTCCCCATTTTCCCAATACTTGCGGGAATACACCCTCCAAGATCGTTATTAGCAAACACAAGAACCGAAACAGGAGAGTTACCCAAGTTCTCCGGGATGCCAAAACGGAATCTATTGTCATTCAAAAACAACGCATCCAAATCTTTATCGAAAAGTCCTGAAGGAACTGGTCCTTCAAAGTCATTAAACCTTAGATCCAAAAACTTCAAAGAAGGTAGTGAAAGAACTACCTTAGGAAACCCACCAACAAACCTATTATTACTCAAATCAAGCTCCCTAAGAAGCTTCAAATGGCTAAAGGTTTTTGGTACAACTCCACAAAAACGATTCGAGTTGAGATGGAAAAGAACCAGATCTGTAAGAAGACCAAGTTCTGCAACTAATGAACCAGCAATATCAGCATGATTAAGATCAATGCCAGCTACAACTCTAATCGAATCATCCATTAACGAAGGAGCACAAAACACTCCACCATAGGAACACACATTTGGACCTGTCCAATTAGCTGTGAAGTTAAAAGGATCAGAAAACATTGCTGTTTTCCAATACTGCAACGCGATATAAGCATCGCGAATCCTTGAGTTTTCAAAACTCAACTTACTAGCATTAGCCTTAATGTCATCTAATCCGATATCGCTATCACCTTCTTGTCCTACCACATACGAGATCTGGTAAGACAAAAGAGTAATAACGAAAAAAGAAATTAATACGCCCCGGCTAGGAGGCCGCATTGCTGAATCTGATAGAGATTTTCTAGCTATGAAGAAGAAAATGAAGTTTTTGTTTTTTCACAATGTGTTGTTGAATGAAATTGATTTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTCGTAAATATAATCAAACTCAAAATAAAAATATTACAAAAAATAAATAACAAAGTATACATAATTCATAAAAAAAAATGAATTCTTTTTTTTTTGATAATGGAAAATCAAAGGCTAATTGATAACCCTTGTTCAGTAATATGGAATGACTGGTGGTGGTGGAGATGCGTAGGAGACTCCGATTACCGGTGGGAGAGGAATATTTTCGTAAAATGGTGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGAGGAGGAGGAGATGGTGATGGAGGTGGTGGTGATGAGTAGGTGTATGGTGGTGATGGTTTTGGTTCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGT....................................................................................................................................GTGATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGTGGTGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTGATAGGTTGGGGACTTTTTGTAAGGTGCTGGTGGAGGAAGAGGAGTTGATTTAGGTGGCGGCGGAGATCGCTTGTTATGCGAACCCGAAGACTTCCAAGTAGGTGGTGGTGGGCCTCTTGGCTTTGGTTTTGGTTTTGGCTTTGTCGAAGGAGATGTAGCAAAAGGGCTATAACACTTGGATTTCCTACAATCATACGGTTTTGCATCATCCGAAGAGCATTCTTTAGCAGATCTTTGATTCTTCTTTCCAACGATACAGTTCTCCTGGCCGTCACCAGATCTAGTCGCAGCACAAACTGGAGCTTCCCCGGTGAAGTAATTGAAGGAATACGTAAAGTTTTGCAACCTAGGAAGTTGGCAAATGCTAGCTGGTATAACCCCAGTAAGCTTGTTGTGAGCCACATTCAGTTCCTCCACACTCCTCATTTTGCTCACAGTTGATGGCAATGAGCCTTGAATCTTGTTGAAGCTAACATCAAACACGGTTAACTTGTTCAACAATCCAATCTCCATTGGCAAACACCCAGTGAGGTTATCATTCATCAATATCAACTCATTCAACGTTTTCCCCATTTTCCCAATACTTGCGGGAATACACCCTCCAAGATCGTTATTAGCAAACACAAGAACCGAAACAGGAGAGTTACCCAAGTTCTCCGGGATGCCAAAACGGAATCTATTGTCATTCAAAAACAACGCATCCAAATCTTTATCGAAAAGTCCTGAAGGAACTGGTCCTTCAAAGTCATTAAACCTTAGATCCAAAAACTTCAAAGAAGGTAGTGAAAGAACTACCTTAGGAAACCCACCAACAAACCTATTATTACTCAAATCAAGCTCCCTAAGAAGCTTCAAATGGCTAAAGGTTTTTGGTACAACTCCACAAAAACGATTCGAGTTGAGATGGAAAAGAACCAGATCTGTAAGAAGACCGAGTTCTGCAACTAATGAACCAGCAATATCAGCATGATTAAGATCAATGCCAGCTACAACTCTAATCGAATCATCCATTAACGAAGGAGCACAAAACACTCCACCATAGGAACACACATTTGGACCTGTCCAATTAGCTGTGAAGTTAAAAGGATCAGAAAACATTGCTGTTTTCCAATACTGCAACGCGATATAAGCATCGCGAGTCCTTGAGTTTTCAAAACTCAACTTACTAGCATTAGCCTTAATGTCATCTAATCCGATATCGCTATCACCTTCTTGTCCTACCACATACGAGATCTGGTAAGACAAAAGAGTAATAACGAAAAAAGAAATTAATACGCCCCGGCTAGGAGGCCGCATTGCTGAATCTGATAGAGATTTTCTAGCTATGAAGAAGAAAATGAAGTTTTTGTTTTTTCACAATGTGTTGTTGAATGAAATTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708539" ref_strand="+" ref_description="SGN-E708539 [FA36AB12]">
      <seq>gtcttaccagatctcgtatgtggtaggacaagaaggtgatagcgatatcggattagatgacattaaggctaatgctagtaagttgagttttgaaaactcaaagattcgcgatgcttatatcgcgttgcagtattggaaaacagcaatgttttctgatccttttaacttcacagctaattggacaggtccaaatgtgtgttcctatggtggagtgttttgtgctccttcgttaacggatgattcgattagagttgtagctggcattgatcttaatcatgctgatattgctggttcattagttgcagaacttggtcttcttacagatctggttcttttccatctcaactcgaatcgtttttgtggagttgtaccaaaaacctttagccatttgaagcttcttagggagcttgatttgagtaataataggtttgttggtgggtttcctaaggtagttctttcactaccttctttgaagtttttggatctaaggtttaatgactttgaaggaccagttccttcaggacttttcgataaagatttggatgcgttgtttttgaatgacaatagattccgttttggcatcccggagaacttgggtaactctcctgtttcggttcttgtgtttgctaataacgatcttggagggcgtattcccgcaagtattgggaaaatggggaaaacgttgaatgagttgatattgatgaatgataacctcactgggtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="37267" stop="38593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37567" g_stop="38293" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E708539" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37567" e_stop="38293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCAGATCTCGTATGTGGTAGGACAAGAAGGTGATAGCGATATCGGATTAGATGACATTAAGGCTAATGCTAGTAAGTTGAGTTTTGAAAACTCAAGGATTCGCGATGCTTATATCGCGTTGCAGTATTGGAAAACAGCAATGTTTTCTGATCCTTTTAACTTCACAGCTAATTGGACAGGTCCAAATGTGTGTTCCTATGGTGGAGTGTTTTGTGCTCCTTCGTTAATGGATGATTCGATTAGAGTTGTAGCTGGCATTGATCTTAATCATGCTGATATTGCTGGTTCATTAGTTGCAGAACTTGGTCTTCTTACAGATCTGGTTCTTTTCCATCTCAACTCGAATCGTTTTTGTGGAGTTGTACCAAAAACCTTTAGCCATTTGAAGCTTCTTAGGGAGCTTGATTTGAGTAATAATAGGTTTGTTGGTGGGTTTCCTAAGGTAGTTCTTTCACTACCTTCTTTGAAGTTTTTGGATCTAAGGTTTAATGACTTTGAAGGACCAGTTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTG</genome_strand>
        <mrna_strand>GTCTTACCAGATCTCGTATGTGGTAGGACAAGAAGGTGATAGCGATATCGGATTAGATGACATTAAGGCTAATGCTAGTAAGTTGAGTTTTGAAAACTCAAAGATTCGCGATGCTTATATCGCGTTGCAGTATTGGAAAACAGCAATGTTTTCTGATCCTTTTAACTTCACAGCTAATTGGACAGGTCCAAATGTGTGTTCCTATGGTGGAGTGTTTTGTGCTCCTTCGTTAACGGATGATTCGATTAGAGTTGTAGCTGGCATTGATCTTAATCATGCTGATATTGCTGGTTCATTAGTTGCAGAACTTGGTCTTCTTACAGATCTGGTTCTTTTCCATCTCAACTCGAATCGTTTTTGTGGAGTTGTACCAAAAACCTTTAGCCATTTGAAGCTTCTTAGGGAGCTTGATTTGAGTAATAATAGGTTTGTTGGTGGGTTTCCTAAGGTAGTTCTTTCACTACCTTCTTTGAAGTTTTTGGATCTAAGGTTTAATGACTTTGAAGGACCAGTTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGCGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704854" ref_strand="-" ref_description="SGN-E704854 [FA25BH02]">
      <seq>tttttttgataggggaaaatcaaagggtaaatgataaacccttgttcagtaatatggaatgactggtgtgggtggagatgcgtaggagactccgattaccggtgggagaggaatattttcgtaaaatgggggtggtggtggcggagaagagtaagtgggcgggggaggtgatggtgatggtggcggtggtgatgagtagtagtaagtgggaggaggaggagatggttttggttcccaatgtgaattaggaggtggaggtggtggttcgttacaaggtggggtaggtggggttgggtgtgatggagtttttgggtgttcgtatgatggtgttggtggtggtggtggtggtgattggggttgtggatgctcgtatgatggtgttggtggtggtggtgatggggtttttggatgctcgtatgatggtgttggtggtgatggtgtttttggatgctcgtatgatggtgttggtggtgatggggtttttgggtgttcgtgtgatggtggagtttttggatgctcgtacgacggtgttggtggtagtggtgatgatggagtttttggatgttcatacgacggtgttggtggtggtggtggtgatttaggcttgtaagtaggtggtggctcatgatacacggggggtggtggagaataataaactggtccttcaaagtcattaaaccttagatccaaaaacttcaaagaaggtagtgaaagaactaccttaggaaacccaccaacaaacctattattactcaaatcaagctccctaagaagcttcaaatggctaaaggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="39915" stop="37640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39615" g_stop="39393" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39392" i_stop="39343" i_length="50">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39342" g_stop="38922" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="659" r_length="435" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38921" i_stop="38076" i_length="846">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38075" g_stop="37940" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="795" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E704854" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704854" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39615" e_stop="39393"/>
          <exon e_start="39342" e_stop="38922"/>
          <exon e_start="38075" e_stop="37940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTGATAATGGAAAATCAAAGGCTAATTGAT-AACCCTTGTTCAGTAATATGGAATGACTGGTGGTGGTGGAGATGCGTAGGAGACTCCGATTACCGGTGGGAGAGGAATATTTTCGTAAAATGGTGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGAGGAGGAGGAGATGGTGATGGAGGTGGTGGTGATGAGTAGGTGTATGGTGGTGATGGTTTTGGT--------TCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGTGTGATGGAGTTTTTGGGTGTTCGTATGATGGTG-T--TGGTGGTGGTGGTGGTGATTGGGGTTGTGGATGCTCGTATGATGGTGTTGGTGGTGGTGGTGATGGGGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGT-G-G-TGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTGATAGGTTGGGGACTTTTTGTAAGGTGCTGGTGGAGGAAGAGGAGTTGATTTAGGTGGCGGCGGAGATCGCTTGTTATGCGAACCCGAAGACTTCCAAGTAGGTGGTGGTGGGCCTCTTGGCTTTGGTTTTGGTTTTGGCTTTGTCGAAGGAGATGTAGCAAAAGGGCTATAACACTTGGATTTCCTACAATCATACGGTTTTGCATCATCCGAAGAGCATTCTTTAGCAGATCTTTGATTCTTCTTTCCAACGATACAGTTCTCCTGGCCGTCACCAGATCTAGTCGCAGCACAAACTGGAGCTTCCCCGGTGAAGTAATTGAAGGAATACGTAAAGTTTTGCAACCTAGGAAGTTGGCAAATGCTAGCTGGTATAACCCCAGTAAGCTTGTTGTGAGCCACATTCAGTTCCTCCACACTCCTCATTTTGCTCACAGTTGATGGCAATGAGCCTTGAATCTTGTTGAAGCTAACATCAAACACGGTTAACTTGTTCAACAATCCAATCTCCATTGGCAAACACCCAGTGAGGTTATCATTCATCAATATCAACTCATTCAACGTTTTCCCCATTTTCCCAATACTTGCGGGAATACACCCTCCAAGATCGTTATTAGCAAACACAAGAACCGAAACAGGAGAGTTACCCAAGTTCTCCGGGATGCCAAAACGGAATCTATTGTCATTCAAAAACAACGCATCCAAATCTTTATCGAAAAGTCCTGAAGGAACTGGTCCTTCAAAGTCATTAAACCTTAGATCCAAAAACTTCAAAGAAGGTAGTGAAAGAACTACCTTAGGAAACCCACCAACAAACCTATTATTACTCAAATCAAGCTCCCTAAGAAGCTTCAAATGGCTAAAGGTTTT</genome_strand>
        <mrna_strand>TTTTTTTGATAGGGGAAAATCAAAGGGTAAATGATAAACCCTTGTTCAGTAATATGGAATGACTGGTGTGGGTGGAGATGCGTAGGAGACTCCGATTACCGGTGGGAGAGGAATATTTTCGTAAAATGGGGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGAGGAGGAGGAGATG..................................................GTTTTGGTTCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGTGTGATGGAGTTTTTGGGTGTTCGTATGATGGTGTTGGTGGTGGTGGTGGTGGTGATTGGGGTTGTGGATGCTCGTATGATGGTGTTGGTGGTGGTGGTGATGGGGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGTGGTGATGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTCAAAGTCATTAAACCTTAGATCCAAAAACTTCAAAGAAGGTAGTGAAAGAACTACCTTAGGAAACCCACCAACAAACCTATTATTACTCAAATCAAGCTCCCTAAGAAGCTTCAAATGGCTAAAGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E392930" ref_strand="+" ref_description="SGN-E392930 [TUS-37-B4]">
      <seq>gttccttcaggacttttcgataaagatttggatgcgttgtttttgaatgacaatagattccgttttggcatcccggagaacttgggtaactctcctgtttcggttcttgtgtttgctaataacgatcttggagggtgtattcccgcaagtattgggaaaatggggaaaacgttgaatgagttgatattgatgaatgataacctcactgggtgtttgccaatggagattggattgttgaacaagttaaccgtgtttgatgttagcttcaacaagattcaaggctcattgccatcaactgtgagcaaaatgaggagtgtggaggaactgaatgtggctcacaacaagcttactggggttataccagctagcatttgccaacttcctaggttgcaaaactttacgtattccttcaattaggggggggggggaagctccagtttgtgctgcgactagatctggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="37778" stop="38838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38078" g_stop="38538" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E392930" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38078" e_stop="38538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTA-CTTCACCGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGA</genome_strand>
        <mrna_strand>GTTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTAGGGGGGGGGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344695" ref_strand="+" ref_description="SGN-E344695 [cTOF-14-N22]">
      <seq>ttccttcaggacttttcgataaagatttggatgcgttgtttttgaatgacaatagattccgttttggcatcccggagaacttgggtaactctcctgtttcggttcttgtgtttgctaataacgatcttggagggtgtattcccgcaagtattgggaaaatggggaaaacgttgaatgagttgatattgatgaatgataacctcactgggtgtttgccaatggagattggattgttgaacaagttaaccgtgtttgatgttagcttcaacaagattcaaggctcattgccatcaactgtgagcaaaatgaggagtgtggaggaactgaatgtggctcacaacaagcttactggggttataccagctagcatttgccaacttcctaggttgcaaaactttacgtattccttcaattacttcaccggggaagctccagtttgtgctgcgactagatctggtgacggccaggagaactgtatcgttggaaagaagaatcaaagatctgctaaagaatgctcttcggatgatgcaaaaccgtatgattgtaggaaatccaagtgttatagcccttttgctacatctccttcgacaaagccaaaaccaaaaccaaagccaagaggcccaccaccacctacttggaagtcttcgggttcgcataacaagcgatctccgncgccacctaaatcaactcctcttccttcaccagcaccttacaaaaagtccccaacctatcaacatagaagtccaccaccacctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="37779" stop="39136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38079" g_stop="38836" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E344695" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38079" e_stop="38836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTACTTCACCGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGACGGCCAGGAGAACTGTATCGTTGGAAAGAAGAATCAAAGATCTGCTAAAGAATGCTCTTCGGATGATGCAAAACCGTATGATTGTAGGAAATCCAAGTGTTATAGCCCTTTTGCTACATCTCCTTCGACAAAGCCAAAACCAAAACCAAAGCCAAGAGGCCCACCACCACCTACTTGGAAGTCTTCGGGTTCGCATAACAAGCGATCTCCGCCGCCACCTAAATCAACTCCTCTTCCTCCACCAGCACCTTACAAAAAGTCCCCAACCTATCAACATAGAAGTCCACCACCACCTACT</genome_strand>
        <mrna_strand>TTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTACTTCACCGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGACGGCCAGGAGAACTGTATCGTTGGAAAGAAGAATCAAAGATCTGCTAAAGAATGCTCTTCGGATGATGCAAAACCGTATGATTGTAGGAAATCCAAGTGTTATAGCCCTTTTGCTACATCTCCTTCGACAAAGCCAAAACCAAAACCAAAGCCAAGAGGCCCACCACCACCTACTTGGAAGTCTTCGGGTTCGCATAACAAGCGATCTCCGNCGCCACCTAAATCAACTCCTCTTCCTTCACCAGCACCTTACAAAAAGTCCCCAACCTATCAACATAGAAGTCCACCACCACCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707354" ref_strand="-" ref_description="SGN-E707354 [FA32DA12]">
      <seq>agactccgattaccggtgggagagggaatatgtttgtagaatggttggtggtggtggcggagaagagtaagtgggcgggggaggtgatggtgatggtggcggtggtgatgagtagtagtaagtggggggaggaggagatggtgatggaggtggtggtgatgagtaggtgtatggtggtgatggttttggttcccaatgtgaattaggaggtggaggtggtggttcgttacaaggtggggtaggtggggttgggtgtgatggagtttttgggtgttcgtatgatggtgttggtggtggtggtggtggtgattggggttgtggatgctcgtatgatggtgttggtggtgatggtgtttttggatgctcgtatgatggtgttggtggtgatggggtttttgggtgttcgtgtgatggtggagtttttggatgctcgtacgacggtgttggtggtagtggtgatgatggagtttttggatgttcatacgacggtgttggtggtggtggtggtgatttaggcttgtaagtaggtggtggctcatgatacacggggggtggtggagaataataaactggtggtggtggtggggacgatggagatgggtggtaatatacaggtgagggtggaggaggtgaatgatgagttacagaagaaattttgtgagtaggtggtggtggacttctatgttataaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="39830" stop="38505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39530" g_stop="39195" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39194" i_stop="39145" i_length="50">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.78"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39144" g_stop="38804" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="693" r_length="352" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E707354" ref_strand="-">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707354" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39530" e_stop="39195"/>
          <exon e_start="39144" e_stop="38804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCCGATTACCGGTGGGAGA-GGAATATTTTCGTAAAATGG-TGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGAGGAGGAGGAGATGGTGATGGAGGTGGTGGTGATGAGTAGGTGTATGGTGGTGATGGTTTTGGTTCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGTGTGATGGAGTTTTTGGGTGTTCGTATGATGGTG-T--TGGTGGTGGTGGTGGTGATTGGGGTTGTGGATGCTCGTATGATGGTGTTGGTGGTGGTGGTGATGGGGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTG-----ATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGT-G-G-TGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAAC---TGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTGATAGGT</genome_strand>
        <mrna_strand>AGACTCCGATTACCGGTGGGAGAGGGAATATGTTTGTAGAATGGTTGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGGGGAGGAGGAGATGGTGATGGAGGTGGTGGTGATGAGTAGGTGTATGGTGGTGATGGTTTTGGTTCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGTGTGATGGAGTTTTTGGGTGTTCGTATGATGGTGTTGGTGGTGGTGGTGGTGGTGATTGGGGTTGTGGATGCTCGTATGATGGTGTTG..................................................GTGGTGATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGTGGTGATGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGAAGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTATAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287932" ref_strand="+" ref_description="SGN-E287932 [cLES-7-C17]">
      <seq>gaacacccaaaaaccccatcaccaccaacaccatcatacgagcgggcaaaaggaccatcaccaccaacaccatcatacgagcatccaaaaaccccatcaccaccaccaccaacaccatcatacgagcatccacaaccccaatcaccaccaccaccaccaacaccatcatacgaacacccaaaaactccatcacacccaaccccacctaccccaccttgtaacgaaccaccacctccacctcctaattcacattgggaaccaaaaccatcaccaccatacacctactcatcaccaccacctccatcaccatctcctcctcctcccacttactactactcatcaccaccgccaccatcaccatcacctcccccgcccacttactcttctccgccaccaccaccaccattttacgaaaatattcctctcccaccggtaatcggagtctcctacgcatgtccaccaccaccagtcattccatattactgaacaagggttatcaattagcctttgattttccattatcaaaaaaaaaagaattcatttttttttatgaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="38786" stop="39943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39086" g_stop="39643" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E287932" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39086" e_stop="39643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACCCAAAAACCCCATCACCACCAACACCATCATACGAGCATCCAAAAACACCATCACCACCAACACCATCATACGAGCATCCAAAAACCCCATCACCACCACCACCAACACCATCATACGAGCATCCACAACCCCAATCACCACCACCACCACCAACACCATCATACGAACACCCAAAAACTCCATCACACCCAACCCCACCTACCCCACCTTGTAACGAACCACCACCTCCACCTCCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTCCATCACCATCTCCTCCTCCTCCCACTTACTACTACTCATCACCACCGCCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTCCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTCTCCTACGCATCTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTCATTTTTTTTTATGAATTAT</genome_strand>
        <mrna_strand>GAACACCCAAAAACCCCATCACCACCAACACCATCATACGAGCGGGCAAAAGGACCATCACCACCAACACCATCATACGAGCATCCAAAAACCCCATCACCACCACCACCAACACCATCATACGAGCATCCACAACCCCAATCACCACCACCACCACCAACACCATCATACGAACACCCAAAAACTCCATCACACCCAACCCCACCTACCCCACCTTGTAACGAACCACCACCTCCACCTCCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTCCATCACCATCTCCTCCTCCTCCCACTTACTACTACTCATCACCACCGCCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTCCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTCTCCTACGCATGTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTCATTTTTTTTTATGAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288088" ref_strand="+" ref_description="SGN-E288088 [cLES-7-E1]">
      <seq>gaacacccaaaaaccccatcaccaccaacaccatcatacgagcatgcaaaaacaccatcaccaccaacaccatcatacgagcatccaaaaaccccatcaccaccaccaccaacaccatcatacgagcatccacaaccccaatcaccaccaccaccaccaacaccatcatacgaacacccaaaaactccatgacacccaaccccacctaccccaccttgtaaagaaccaccacctccaccttctaattcacattgggaaccaaaaccatcaccaccatacacctactcatcaccaccaccttcatcaccatcttctcctcctcccacttactactactcatcaccaccggcaccatcaccatcacctcccccgcccacttactcttcttcgccaccaccaccaccattttacgaaaatattcctctcccaccggtaatcggagtgtcctacgcatgtccaccaccaccagtcattccatattactgaacaagggttatcaattagcctttgattttccattatcaaaaaaaaaagaattcattttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="38786" stop="39934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39086" g_stop="39634" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E288088" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39086" e_stop="39634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACCCAAAAACCCCATCACCACCAACACCATCATACGAGCATCCAAAAACACCATCACCACCAACACCATCATACGAGCATCCAAAAACCCCATCACCACCACCACCAACACCATCATACGAGCATCCACAACCCCAATCACCACCACCACCACCAACACCATCATACGAACACCCAAAAACTCCATCACACCCAACCCCACCTACCCCACCTTGTAACGAACCACCACCTCCACCTCCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTCCATCACCATCTCCTCCTCCTCCCACTTACTACTACTCATCACCACCGCCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTCCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTCTCCTACGCATCTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTCATTTTTTTTT</genome_strand>
        <mrna_strand>GAACACCCAAAAACCCCATCACCACCAACACCATCATACGAGCATGCAAAAACACCATCACCACCAACACCATCATACGAGCATCCAAAAACCCCATCACCACCACCACCAACACCATCATACGAGCATCCACAACCCCAATCACCACCACCACCACCAACACCATCATACGAACACCCAAAAACTCCATGACACCCAACCCCACCTACCCCACCTTGTAAAGAACCACCACCTCCACCTTCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTTCATCACCATCTTCTCCTCCTCCCACTTACTACTACTCATCACCACCGGCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTTCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTGTCCTACGCATGTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTCATTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745240" ref_strand="+" ref_description="SGN-E745240 [GI|19231]">
      <seq>gaattcccctcctaattcacattgggaaccaaaaccatcaccaccatacacctactcatcaccaccacctccatcaccatctcctcctcctcccacttactactactcatcaccaccgccaccatcaccatcacctcccccgcccacttactcttctccgccaccaccaccaccattttacgaaaatattcctctcccaccggtaatcggagtctcctacgcatctccaccaccaccagtcattccatattactgaacaagggttatcaattagcctttgattttccattatcaaaaaaaaaagaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="39019" stop="39924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39315" g_stop="39624" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E745240" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39315" e_stop="39624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCCACCTCCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTCCATCACCATCTCCTCCTCCTCCCACTTACTACTACTCATCACCACCGCCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTCCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTCTCCTACGCATCTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTC</genome_strand>
        <mrna_strand>GAATTCC-CCTCCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTCCATCACCATCTCCTCCTCCTCCCACTTACTACTACTCATCACCACCGCCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTCCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTCTCCTACGCATCTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367635" ref_strand="+" ref_description="SGN-E367635 [cLPT-14-E4]">
      <seq>gacttgatagcctctcagtttgaaccagttgcaaaaaccctaatttcagagttcgctacggtatagggttccgtcaaagctaaccagtacttcactggcggaacaccgagccatcggccaaccggcagagagcatcatcgcaaatggacttcgacgagtacgactatctggagaagactgtggaagagaccaacggtacttctacgaagagcaaagacaaagacaataacagcagcgccgagaaggagaagagcgagaaaggctatcgtcgaagggagagagatggaagtgaggaatacgccgacgacgacaatagagagcgccggagcagcaaaaagtctcgcggggacggcgaaagcatcagagagaaggataaggagagagatagggaaaggtcatcgaggcatcggagtagggaacgggaatctgagagggacaaagaaagaagctcaaaagaccgtgaccgtgacagagagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="46117" stop="47192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46417" g_stop="46892" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E367635" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46417" e_stop="46892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGATAGCCTCTCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTA---CACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAGAA</genome_strand>
        <mrna_strand>GACTTGATAGCCTCTCAGTTTGAACCAG-TTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACTTCACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGACTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340894" ref_strand="+" ref_description="SGN-E340894 [cTOF-5-E21]">
      <seq>acttgatagcctctcagtttgaaccagtttgcaaaaaccctaatttcagagttcgctacggtatagggttccgtcaaagctaaccagtacactggcggaacaccgagccatcggccaaccggcagagagcatcatcgcaaatggacttcgacgagtacgattatctggagaagactgtggaagagaccaacggtacttctacgaagagcaaagacaaagacaataacagcagcgccgagaaggagaagagcgagaaaggctatcgtcgaagggagagagatggaagtgaggaatacgccgacgacgacaatagagagcgccggagcagcaaaaagtctcgcggggacggcgaaagcatcagagagaaggataaggagagagatagggaaaggtcatcgaggcatcggagtagggaacgggaatctgagagggacaaagaaagaagctcaaaagaccgtgaccgtgacagagaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="46118" stop="53620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46418" g_stop="46923" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E340894" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46418" e_stop="46923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGATAGCCTCTCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAGAAAAGGGAAAAGGAGAAAGAGAAAGAGAGGGAT</genome_strand>
        <mrna_strand>ACTTGATAGCCTCTCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345154" ref_strand="+" ref_description="SGN-E345154 [cTOF-22-J4]">
      <seq>tcagtttgaaccagtttgcaaaaaccctaatttcagagttcgctacggtatagggttccgtcaaagctaaccagtacactggcggaacaccgagccatcggccaaccggcagagagcatcatcgcaaatggacttcgacgagtacgattatctggagaagactgtggaagagaccaacggtacttctacgaagagcaaagacaaagacaataacagcagcgccgagaaggagaagagcgagaaaggctatcgtcgaagggagagagatggaagtgaggaatacgccgacgacgacaatagagagcgccggagcagcaaaaagtctcgcggggacggcgaaagcatcagagagaaggataaggagagagatagggaaaggtcatcgaggcatcggagtagggaacgggaatctgagagggacaaagaaagaagctcaaaagaccgtgaccgtgacagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="46131" stop="53620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46431" g_stop="46929" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E345154" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46431" e_stop="46929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAGAAAAGGGAAAAGGAGAAAGAGAAAGAGAGGGATAGAGAC</genome_strand>
        <mrna_strand>TCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226150" ref_strand="+" ref_description="SGN-E226150 [cLEL-31-K7](-)">
      <seq>atcggccaaccggcagagagcatcatcgcaaatggacttcggcgagtacgattatctggagaagactgtggaaaagacccacggtacttcttcgaagagcaaagacaaaggcaataacagcagcgccgagaaggagaagagcgagaaaggctatcgtcgaagggagagagatggaagtgaggaatacgccgacgacgacaatagagagcgccggagcagcaaaaagtctcgcgggggcggcgaaagcatcagagagaaggataaggagagagatagggaaaggtcatcgaggcatcggagtagggaacgggaatctgagagggacaaagaaagaagctcaaaagaccgtgcccgtgccagagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="46227" stop="53620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46527" g_stop="46921" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E226150" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46527" e_stop="46921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAGAAAAGGGAAAAGGAGAAAGAGAAAGAGAGGG</genome_strand>
        <mrna_strand>ATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGGCGAGTACGATTATCTGGAGAAGACTGTGGAAAAGACCCACGGTACTTCTTCGAAGAGCAAAGACAAAGGCAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGGCGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGCCCGTGCCAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226054" ref_strand="+" ref_description="SGN-E226054 [cLEL-31-K7](-)">
      <seq>aaggctatcgtcgaagggagaaagatggaagttaggaatacgccgacgacgacaatagagagcgccggagcagcaaaaagtctcgcggggacggcgaaagcatcagagagaaggataaggagagagatagggaaaggtcatccaggcatcggagtagggaacgggaatctgaaagggacaaagaaagaagctcaaaagaccgtgaccgtgccagagaaaaaaaaaaaaacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="46373" stop="53617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46673" g_stop="46921" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E226054" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46673" e_stop="46921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAGAAAAGGGAAAAGGAGAAAGAGAAAGAGAGGG</genome_strand>
        <mrna_strand>AAGGCTATCGTCGAAGGGAGAAAGATGGAAGTTAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCCAGGCATCGGAGTAGGGAACGGGAATCTGAAAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGCCAGAGAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337589" ref_strand="+" ref_description="SGN-E337589 [cTOE-11-F5]">
      <seq>tcgagaatcgagcgagagcgagagaaagagatgttgagagacagcgagcgtgactttgaatcacgggacagcagatggattgtttccacatcttaatgggctaacaatgcggaaacccttcaaggctcgattgaagaagtggcttattcccacatatattgagtatgataaggttggcaaagcatatggtgtgaggctgtatcagtttttcaaccttttcttctgttcgaagacgaaaatacattaaccctatatgtcattctttttttgtgaaagcagggaaaagtctcaaaattttggtgctgggcagcgtataatgtcacaacacatactgcattcatattcttaacttgaagatgcttcgaaagttcaaattatcttctagaatttgctctatttggacttgttttctttttctctgggaatgttgcgttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="46747" stop="48450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47047" g_stop="47120" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47121" i_stop="47648" i_length="528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47649" g_stop="47746" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="172" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47747" i_stop="47884" i_length="138">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47885" g_stop="48150" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="438" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E337589" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47047" e_stop="47120"/>
          <exon e_start="47649" e_stop="47746"/>
          <exon e_start="47885" e_stop="48150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGAATCGAGCGAGAGCGAGAGAAAGAGATGTTGAGAGACAGCGAGCGTGACTTTGAATCACGGGACAGCAGGTTATACTCTTTGCTTCGCTTGTATCTTATGTTACATTATTAGTCTCATGTCATATCAAGTGCTGCTGTTTGTTGCTTCTTAACAATTTTGAGTTTATTTCAAAATGATTAGTGTTTTGATGATAATTATTAATTCAGGATGTAGTGATTGATGAATAGTTTCCAATGTACATCAATATGGTTGGCAACTGCAGTTATGTAGTTGGTTGGCAATTGCAATCATGTAGCTGCTAATGTGGTGAAAGGCATTGCGAAAACTAAAAAGAAATGATCAATATTTGCATCTCATCATCTTTATATCTCAAATTTATATCAATTTTTTTACCGGGCTGTCCACTGTTTTGTAACCCAAAAAACAGAAAATTAGGTAATGGTTGAGTTTAAGTATGTGCTTGAACACACTCTGCTGAGTGTTTCGAGTTCTAGTAGGTTCAAACGGAGAAGGCAATTTAAAGTGGTCTAAGTGCGTAAAAGAGTGTCAGTTTATCCACAAAGAATGTAATATTCTGACTTGGGTTGAAATCGTAGATGGATTGTTTCCACATCTTAATGGGCTAACAATGCGGAAACCCTTCAAGGCTCGATTGAAGAAGTGGCTTATTCCCACATATATTGAGTATGATAAGGTCTGTTAAGTTTCTTTTGGTCTTTGAGATTTTCGCTCACTCTTGAATCCTTCTAATGTTTTTGCATTGATGGATTTAAGGTTACTTTTTTCTTAAATCTGATTTGAGATGTTGACAAATGATGTATTGAATTTCTAGGTTGGCAAAGCATATGGTGTGAGGCTGTATCAGTTTTTCAACCTTTTCTTCTGTTCGAAGACGAAAATACATTAACCCTATATGTCATTCTTTTTTTGTGAAAGCAGGGAAAAGTCTCAAAATTTTGGTGCTGGGCAGCGTATAATGTCACAACACATACTGCATTCATATTCTTAACTTGAAGATGCTTCGAAAGTTCAAATTATCTTCTAGAATTTGCTCTATTTGTACTTGTTTTCTTTTTCTCTGGGAATGTTGCGTTTTGC</genome_strand>
        <mrna_strand>TCGAGAATCGAGCGAGAGCGAGAGAAAGAGATGTTGAGAGACAGCGAGCGTGACTTTGAATCACGGGACAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGATTGTTTCCACATCTTAATGGGCTAACAATGCGGAAACCCTTCAAGGCTCGATTGAAGAAGTGGCTTATTCCCACATATATTGAGTATGATAAG..........................................................................................................................................GTTGGCAAAGCATATGGTGTGAGGCTGTATCAGTTTTTCAACCTTTTCTTCTGTTCGAAGACGAAAATACATTAACCCTATATGTCATTCTTTTTTTGTGAAAGCAGGGAAAAGTCTCAAAATTTTGGTGCTGGGCAGCGTATAATGTCACAACACATACTGCATTCATATTCTTAACTTGAAGATGCTTCGAAAGTTCAAATTATCTTCTAGAATTTGCTCTATTTGGACTTGTTTTCTTTTTCTCTGGGAATGTTGCGTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304391" ref_strand="+" ref_description="SGN-E304391 [cLEX-12-P4]">
      <seq>ctggtggttggatttctatttgcttcctgtttagatatataagatgaaactcattgggggtcattgagcatttatgaggagatcgtgctatattcacctaaacaagtagataaatgaagtttgcattttctactagcctattggtctatccaaaactttagaatcttgttgactttttccacatttgtctccaaagggcttgccttgatgatctatcctgctgcagtagctactccatctaattgagaagaggtgaaatttagcacagcaagggaggctttagaggatgatgattcctcatgtcataatgtaatttgtagaatgtccatgtatttatgcaagtgtggttgagctttgatgtttatagtagttgattaccttcaatgtagcaggtgctacataaagtacttgaaatgaaaatccactccctactatgtgcaacttaaattttacaaccagagcctcatattttttcgttctttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="47850" stop="48934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48150" g_stop="48634" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E304391" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48150" e_stop="48634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGGTTGGATTTCTATTTGCTTCCTGTTTAGATATATAAGATGAAACTCATTGGGGGTCATTGAGCATTTATGAGGAGATCGTGCTATATTCACCTAAACAAGTAGATAAATGAAGTTTGCATTTTCTACTAGCCTATTGGTCTATCCAAAACTTTAGAATCTTGTTGACTTTTTCCACATTTGTCTCCAAAGGGCTTGCCTTGATGATCTATCCTGCTGCAGTAGCTACTCCATCTAATTGAGAAGAGGTGAAATTTAGCACAGCAAGGGAGGCTTTAGAGGATGATGATTCCTCATGTCATAATGTAATTTGTAGAATGTCCATGTATTTATGCAAGTTTGGTTGAGCTTTGATGTTTATAGTAGTTGATTACCTTCAATGTAGCAGGTGCTACATAAAGTACTTGAAATGAAAATCCACTCCCTACTATGTGCAACTTAAATTTTACAACCAGAGCCTCATATTTTTTCGTTCTTTACT</genome_strand>
        <mrna_strand>CTGGTGGTTGGATTTCTATTTGCTTCCTGTTTAGATATATAAGATGAAACTCATTGGGGGTCATTGAGCATTTATGAGGAGATCGTGCTATATTCACCTAAACAAGTAGATAAATGAAGTTTGCATTTTCTACTAGCCTATTGGTCTATCCAAAACTTTAGAATCTTGTTGACTTTTTCCACATTTGTCTCCAAAGGGCTTGCCTTGATGATCTATCCTGCTGCAGTAGCTACTCCATCTAATTGAGAAGAGGTGAAATTTAGCACAGCAAGGGAGGCTTTAGAGGATGATGATTCCTCATGTCATAATGTAATTTGTAGAATGTCCATGTATTTATGCAAGTGTGGTTGAGCTTTGATGTTTATAGTAGTTGATTACCTTCAATGTAGCAGGTGCTACATAAAGTACTTGAAATGAAAATCCACTCCCTACTATGTGCAACTTAAATTTTACAACCAGAGCCTCATATTTTTTCGTTCTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279822" ref_strand="-" ref_description="SGN-E279822 [cLER-8-B21]">
      <seq>atgctcccaacacaactcattgcttccatggctcccgaacccattgggatacccagcgagtgtttgttattaaaaaacatgtttgatcctgcaactgagacggatccagaatttgatttggatattaaagatgatgtaaaggaggaatgttccaagtatggcagggtcaagcatatccatgtggacaagaatacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcaacaagccatgcacaagagatggtttgctggcaggtcgatttcagccatctacttgcaaccgtatgaatatgatgccaagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagactgctgatttgtttattgtaattgcaatagtgcagctgattttgtaatttaagttgggataccaaagactcgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="54120" stop="56089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54420" g_stop="54518" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54519" i_stop="54638" i_length="120">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54639" g_stop="54727" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="188" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54728" i_stop="54911" i_length="184">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54912" g_stop="55026" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="303" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55027" i_stop="55585" i_length="559">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55586" g_stop="55789" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="507" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E279822" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279822" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54420" e_stop="54518"/>
          <exon e_start="54639" e_stop="54727"/>
          <exon e_start="54912" e_stop="55026"/>
          <exon e_start="55586" e_stop="55789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTTGATCCTGCAACTGAGGTTTGTGTCCCTGTGGAGTCACATTTAACAGCACATTTCTGAACCATCATGGATAGAGGAGGTGCATATCTGATTCTCTGTTATTTCACAACATATTGATCTTCCAATTGTGTGCTGCAGACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTC</genome_strand>
        <mrna_strand>ATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTTGATCCTGCAACTGAG........................................................................................................................ACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA........................................................................................................................................................................................GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349755" ref_strand="-" ref_description="SGN-E349755 [cTOS-3-G10]">
      <seq>atccagaatttgatttggatattaaagatgatgtaaaggaggaatgttccaagtatggcagggtcaagcatatccatgtggacaagaatacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcaacaagccatgcacaagagatggtttgctggcaggtcgatttcagccatctacttgcaaccgtatgaatatgatgccaagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagactgctgatttgtttattgtaattgcaatagtgcagctgattttgtaatttaagttgggataccaaagactcgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctcattttagtcaactgtcacttatggaattcatttgtatttttttttggcaacttgattgatgagatttaagtgtgtttgctattggaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="54343" stop="56178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54643" g_stop="54727" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54728" i_stop="54911" i_length="184">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54912" g_stop="55026" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="200" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55027" i_stop="55585" i_length="559">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55586" g_stop="55879" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="494" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="512"/>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E349755" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349755" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54643" e_stop="54727"/>
          <exon e_start="54912" e_stop="55026"/>
          <exon e_start="55586" e_stop="55879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAC</genome_strand>
        <mrna_strand>ATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA........................................................................................................................................................................................GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357036" ref_strand="-" ref_description="SGN-E357036 [cTOS-22-E8]">
      <seq>tccagaatttgatttggatattaaagatgatgtaaaggaggaatgttccaagtatggcagggtcaagcatatccatgtggacaagaatacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcaacaagccatgcacaagagatggtttgctggcaggtcgatttcagccatctacttgcaaccgtatgaatatgatgccaagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagactgctgatttgtttattgtaattgcaatagtgcagctgattttgtaatttaagttgggataccaaagactcgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctcattttagtcaactgtcacttatggaattcatttgtatttttttttggcaacttgattgatgagatttaagtgtgtttgctattggaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="54344" stop="56178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54644" g_stop="54727" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54728" i_stop="54911" i_length="184">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54912" g_stop="55026" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="199" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55027" i_stop="55585" i_length="559">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55586" g_stop="55879" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="493" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="494" polyA_stop="511"/>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E357036" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357036" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54644" e_stop="54727"/>
          <exon e_start="54912" e_stop="55026"/>
          <exon e_start="55586" e_stop="55879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAC</genome_strand>
        <mrna_strand>TCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA........................................................................................................................................................................................GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302821" ref_strand="+" ref_description="SGN-E302821 [cLEY-2-O5]">
      <seq>aatgttccaagtatggcagggtcaagcatatccatgtggacaagaatacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcaacaagccatgcacaagagatggtttgctggcaggtcgatttcagccatctacttgcaaccgtatgaatatgatgccaagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagactgctgatttgtttattgtaattgcaatagtgcagctgattttgtaatttaagttgggataccaaagactcgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctcattttagtcaactgtcacttatggaattcatttgtatttttttttggcaacttgattgatgagatttaagtgtgtttgctattggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="54385" stop="56178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54685" g_stop="54727" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54728" i_stop="54911" i_length="184">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54912" g_stop="55026" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="158" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55027" i_stop="55585" i_length="559">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55586" g_stop="55879" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="452" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E302821" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54685" e_stop="54727"/>
          <exon e_start="54912" e_stop="55026"/>
          <exon e_start="55586" e_stop="55879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAC</genome_strand>
        <mrna_strand>AATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA........................................................................................................................................................................................GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217779" ref_strand="+" ref_description="SGN-E217779 [cLEL-23-F13](-)">
      <seq>tgttccaagtatggcagggtcaagcatatccatgtggacaagaatacctctggttacgtgtacttgcggtttgatagtgttgaagctgcatctcgtgctcaacaagccatgcacaaaagatggtttgctggcaggtcgatttcagccatctacttgcaaccgtatgaatatgatgccaagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagactgctgatttgtttattgtaattgcaatagtgcagctgattttgtaatttaagttgggataccaaagactcgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctcattttagtcaactgtcacttatggaattcatttgtatttttttttggcaacttgattgatgagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="54387" stop="56158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54687" g_stop="54727" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54728" i_stop="54911" i_length="184">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54912" g_stop="55026" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="156" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55027" i_stop="55585" i_length="559">
            <donor d_prob="0.929" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55586" g_stop="55858" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="429" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="430" polyA_stop="456"/>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E217779" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54687" e_stop="54727"/>
          <exon e_start="54912" e_stop="55026"/>
          <exon e_start="55586" e_stop="55858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAAGTACGTGGTTAATTTGTATTGTTGACTGCCCTGTGGTTTTTTAAGTGGCTAGTTCTCCATTCCTGTTTAGACAAGTCTTATTCTTAAATATTATGATCCAATAATCAGCTATTCGGGCTGGCTACTTACTGGTAAATCAATGTCATTTTCGTCAGCTATTGATCGTAGATGTATCTTTTGGCAGGAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAA</genome_strand>
        <mrna_strand>TGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA........................................................................................................................................................................................GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAAAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218142" ref_strand="+" ref_description="SGN-E218142 [cLEL-23-F14](-)">
      <seq>atggtttgctggcaggtcgatttcagccatgtacttgcacccgtatgaatatgatgcccagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagagtgctgatttgtttattgtaattgcaatagggcagctgattttgtaatttaagttgggagaccaaagacccgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctcattttagtcaactgtcccccatggaagtcatttgtattttcttttggcaacttgattgatgagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="54690" stop="56158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54990" g_stop="55026" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55027" i_stop="55585" i_length="559">
            <donor d_prob="0.929" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55586" g_stop="55858" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="310" r_length="273" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="311" polyA_stop="337"/>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E218142" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54990" e_stop="55026"/>
          <exon e_start="55586" e_stop="55858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAA</genome_strand>
        <mrna_strand>ATGGTTTGCTGGCAGGTCGATTTCAGCCATGTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCGTATGAATATGATGCCCAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGAGTGCTGATTTGTTTATTGTAATTGCAATAGGGCAGCTGATTTTGTAATTTAAGTTGGGAGACCAAAGACCCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCCCCCATGGAAGTCATTTGTATTTTCTTTTGGCAACTTGATTGATGAGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218279" ref_strand="+" ref_description="SGN-E218279 [cLEL-23-F13](-)">
      <seq>tggtttgctggcaggtcgatttcagccatctacttgcaaccgtatgaatatgatgccaagttcaaaggtacaggctagatgggagccatctaaaatgtctgaagactgctgatttgtttattgtaattgcaatagtgcagctgattttgtaatttaagttgggataccaaagactcgttaaagttccttatacccggacagatgaggttataggttgtgtaattttgacacagtattctcattttagtcaactgtcacttatggaattcatttgtatttttttttggcaacttgattgatgagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="54691" stop="56158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54991" g_stop="55026" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55027" i_stop="55585" i_length="559">
            <donor d_prob="0.929" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55586" g_stop="55858" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="309" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="310" polyA_stop="336"/>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E218279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54991" e_stop="55026"/>
          <exon e_start="55586" e_stop="55858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTGGTAAATGCCCAACTTGTCCCAGCATTTTCATGTCCTTATCTTCTTCCTCTTCTTCGAATGCATAAATGGTTCATGGAACATTTTTTTTTTGGGGGTGGGGGTGGCAAGGGGGGTTTGGGTTGCAGAATGTTAATTTCTACCCTGTTGGTCTGTTTAATGAAGTGTCATTTGTTCCTATTCTGTTTATTTGTTGTGGCATCTTGATTCCAGTTATGGCAGACAGCTGAGTTCAGACCAAAAAATAAAGAAGAAATTTTTGGACTTGTGGGTTAATTTTGACAGCCTATCTTTTTGTTGTCACTTGATAAAGTAAAGAGTGAATACACTTGCCCGTACTTGGTTCATTATATAGACTTCAGATCATTTCTTTTTCTGCTCACCCTTAGCCTCCCCCCAACCCCTATATAAGATGGGTAAAATGGACAGTACTTGTAGACAAGTCTGTTATATTAAGTTCTTAGTTTACCTAGCTCTTGTATATGTTTTGAATGAGCTTTTTTCTTTGACGATCGAAAAAGTGCAGTTAGATTTTTCTGATTGTTTTTTTCGTGTTGTGCAGCAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAA</genome_strand>
        <mrna_strand>TGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311077" ref_strand="+" ref_description="SGN-E311077 [cLEZ-17-L4]">
      <seq>tttgtactcttgccaaatttgggagtataaagtggaaacccggtttagggagtctggttttagggtcgggtgattacgatggagtggttatggagtgtgacctagagaaaaaaatgcccgttttcgagcgtgatgagcatggtggtagacgggtttggagcattgactattgtcagtcggatccggttttgggtgcatccggatccgatgacggaaccatgcaaatgtgggacccgcggtgcggtgacagtggcaagtgtttagctatggtacaacctaccaaagggtatagtacacccgtgtgttgcgtcgaatttaatccgttcaaaggtccaatcgtagccgttggatgcgctgaccggagggtctacgcgtatgatatgaggaaaatgcttgacccactctttgtcctggatggacatgagaaagcagttacttacattagatttgttgatgaacgtactattatttctttgagcatagatggttgtttaaaaatgtggaatgcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="61982" stop="63092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62282" g_stop="62792" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E311077" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62282" e_stop="62792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTACTCCGGCCAAACTCGGGAGTATAAAGTGGAAACCCGGTTTAGGGAGTCGGGTTTTAGGGTCGGGTGATTACGATGGAGTGGTTATGGAGTATGACCTAGAGAAAAAAATGCCCGTTTTCGAGCGTGATGAGCATGGTGGTAGACGGGTTTGGAGCATTGACTATTGTCAGTCGGATCCGGTTTTGGGTGCATCCGGATCCGATGACGGAACCATGCAAATGTGGGACCCGCGGTGCGGTGACAGTGGCAAGTGTTTAGCTATGGTACAACCTACCAAAGGGTATAGTACACCCGTGTGTTGCGTCGAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGA</genome_strand>
        <mrna_strand>TTTGTACTCTTGCCAAATTTGGGAGTATAAAGTGGAAACCCGGTTTAGGGAGTCTGGTTTTAGGGTCGGGTGATTACGATGGAGTGGTTATGGAGTGTGACCTAGAGAAAAAAATGCCCGTTTTCGAGCGTGATGAGCATGGTGGTAGACGGGTTTGGAGCATTGACTATTGTCAGTCGGATCCGGTTTTGGGTGCATCCGGATCCGATGACGGAACCATGCAAATGTGGGACCCGCGGTGCGGTGACAGTGGCAAGTGTTTAGCTATGGTACAACCTACCAAAGGGTATAGTACACCCGTGTGTTGCGTCGAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTTGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246302" ref_strand="+" ref_description="SGN-E246302 [cLEF-40-J11]">
      <seq>gaatttaatccgttcaaaggtccaatcgtagccgttggatgcgctgaccggagggtctacgcgtatgatatgaggaaaatgcttgacccactctttgtcctggatggacatgagaaagcagttacttacattagatttgttgatgaacgtactattatttcttcgagcatagatggttgtttaaaaatgtggaatgcggaggaccagaaggtccttcgcacctacaaggggcatagtaatagtaggaggtttgtagggttatcggtatggaaaccgggtggattaatttgttgtggctcagaaaataatcaagtttttgtatacgataaaagatggggtgaaccaatatggatgtatggacgcgaaccaagacatgagcatgggttcgttagtagcgtatgttggcaacaaaaggacgaaaatcaatgcacactcgtagctggagattcagatggtgttttacgagtttttaatggcaagaggaaatgactatatatatattcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="62293" stop="63401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62593" g_stop="63101" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E246302" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62593" e_stop="63101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGAGGACCAGAAGGTCCTTCGCACCTACAAGGGGCATAGTAATAGTAGGAGGTTTGTAGGGTTATCGGTATGGAAACCGGGTGGATTAATTTGTTGTGGCTCAGAAAATAATCAAGTTTTTGTATACGATAAAAGATGGGGTGAACCAATATGGATGTATGGACGCGAACCAAGACATGAGCATGGGTTCGTTAGTAGCGTATGTTGGCAACAAAAGGACGAAAATCAATGCACACTCGTAGCTGGAGATTCAGATGGTGTTTTACGAGTTTTTAATGGCAAGAGGAAATGACTATATATATATATTCACTC</genome_strand>
        <mrna_strand>GAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGAGGACCAGAAGGTCCTTCGCACCTACAAGGGGCATAGTAATAGTAGGAGGTTTGTAGGGTTATCGGTATGGAAACCGGGTGGATTAATTTGTTGTGGCTCAGAAAATAATCAAGTTTTTGTATACGATAAAAGATGGGGTGAACCAATATGGATGTATGGACGCGAACCAAGACATGAGCATGGGTTCGTTAGTAGCGTATGTTGGCAACAAAAGGACGAAAATCAATGCACACTCGTAGCTGGAGATTCAGATGGTGTTTTACGAGTTTTTAATGGCAAGAGGAAATGAC--TATATATATATTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252340" ref_strand="+" ref_description="SGN-E252340 [cLEG-12-P18]">
      <seq>acttacattagatttgttgatgaacgtactattatttcttcgagcatagatggtgtgtttaaaaatgtggaatgcggaggaccagaaggtccttcgcacctacaaggggcatagtaatagtaggaggtttgtagggttatcggtatggaaaccgggtggattaatttgttgtggctcagaaaataatcaagtttttgtatacgataaaagatggggtgaaccaatatggatgtatggacgcgaaccaagacatgagcatgggttcgttagtagcgtatgttggcaacaaaaggacgaaaatcaatgcacactcgtagctggagattcagatggtgttttacgagtttttaatggcaagaggaaatgactatatatatatattcactcaaaatccagtaaaagacgaagtatcggcaaaatgtgtaatattatttcatgagaagtcaatcgtggccaatacaacaaggtaacacattttcttttttctttttcaattattcttctaattaatacaggagttagaggaattgttcaccatttacatttgtctgaaatagatagatagaggatatgattcgatagaaaaatatctgaagaaatttaaattgcaaatgctatatagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="62416" stop="63639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62716" g_stop="63339" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E252340" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62716" e_stop="63339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGT-TGTTTAAAAATGTGGAATGCGGAGGACCAGAAGGTCCTTCGCACCTACAAGGGGCATAGTAATAGTAGGAGGTTTGTAGGGTTATCGGTATGGAAACCGGGTGGATTAATTTGTTGTGGCTCAGAAAATAATCAAGTTTTTGTATACGATAAAAGATGGGGTGAACCAATATGGATGTATGGACGCGAACCAAGACATGAGCATGGGTTCGTTAGTAGCGTATGTTGGCAACAAAAGGACGAAAATCAATGCACACTCGTAGCTGGAGATTCAGATGGTGTTTTACGAGTTTTTAATGGCAAGAGGAAATGACTATATATATATATTCACTCAAAATCCAGTAAAAGACGAAGTATCGGCAAAATGTGTAATATTATTTCATGAGAAGTCAATCGTGGCCAATACAACAAGGTAACACATTTTCTTTTTTCTTTTTCAATTATTCTTCTAATTAATACAGGAGTTAGAGGAATTGTTCACCATTTACATTTGTCTGAAATAGATAGATAGAGGATATGATTCGATAGAAAAATATCTGAAGAAATTTAAATTGCAAATGCTATATAGTTT</genome_strand>
        <mrna_strand>ACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTGTGTTTAAAAATGTGGAATGCGGAGGACCAGAAGGTCCTTCGCACCTACAAGGGGCATAGTAATAGTAGGAGGTTTGTAGGGTTATCGGTATGGAAACCGGGTGGATTAATTTGTTGTGGCTCAGAAAATAATCAAGTTTTTGTATACGATAAAAGATGGGGTGAACCAATATGGATGTATGGACGCGAACCAAGACATGAGCATGGGTTCGTTAGTAGCGTATGTTGGCAACAAAAGGACGAAAATCAATGCACACTCGTAGCTGGAGATTCAGATGGTGTTTTACGAGTTTTTAATGGCAAGAGGAAATGACTATATATATATATTCACTCAAAATCCAGTAAAAGACGAAGTATCGGCAAAATGTGTAATATTATTTCATGAGAAGTCAATCGTGGCCAATACAACAAGGTAACACATTTTCTTTTTTCTTTTTCAATTATTCTTCTAATTAATACAGGAGTTAGAGGAATTGTTCACCATTTACATTTGTCTGAAATAGATAGATAGAGGATATGATTCGATAGAAAAATATCTGAAGAAATTTAAATTGCAAATGCTATATAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699584" ref_strand="+" ref_description="SGN-E699584 [FA10CD07]">
      <seq>cttgtcacctgtggaatgattctcggagctttaattcaattagcatttattcgtaggatggaggactcactggacagagaattttcttttggtggaaagcatgcaagtttagctggcagcaattttccgttagcaagaggaatctctaattggcctcatgacaaagatgccatagcactgcgtgtaggatatgtgaagcctgaaataattagttggaaaccaagaattgtattatttcacaacttcttaagtgcagaggaatgtgattatcttagatcgattgccattcctcgccttcatgtttccactgttgtagatgcaaaaactgggaagggagttaagagtgatgtcagaacaagttctggtatgtttctgaaccctgatgagaggaagtatcccatgatacaggcaattgaaaaacgaatttctgtgtattctcaaataccagtagaaaatggggaactcattcaagtgttaaggtatgaaaagaatcagttctatagagcccatcatgactatttctctgatagttttaatgtgaagcgtggaggtcaaagaatagctacaatgctcatgtatttgagcgacaatgtggaggggggagaaacatactttcctatggctggcactggtaaatgtagctgtggcggcaaaatgatccaagggttatgtgtaaaacctacgaaaggagatgctgttcttttttggagtatggggcttgatggacaatctgaccctgatagtctacatggaggatgtgaagtaatctcaggagagaaatggtcagctactnaatggatgaggcaaagaactgtatcctaaattcctcatacatttcttcttttttttttttttttggccccacccaaattgaacccggaaaggaaaaaaagggagttacttgccttttgaaaatttaccaccccttggtttttttggaaaaaaatgaaccctttaataaatttctctattggaactttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="77780" stop="64513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77480" g_stop="77456" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77455" i_stop="75809" i_length="1647">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75808" g_stop="75761" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="73" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75760" i_stop="74175" i_length="1586">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74174" g_stop="74109" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="139" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74108" i_stop="73677" i_length="432">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73676" g_stop="73624" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="192" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73623" i_stop="72733" i_length="891">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72732" g_stop="72667" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="258" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72666" i_stop="71661" i_length="1006">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71660" g_stop="71586" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="333" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71585" i_stop="69951" i_length="1635">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69950" g_stop="69876" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="408" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69875" i_stop="69605" i_length="271">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69604" g_stop="69534" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="479" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="69533" i_stop="69441" i_length="93">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="69440" g_stop="69389" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="531" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="69388" i_stop="69288" i_length="101">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="69287" g_stop="69198" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="621" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="69197" i_stop="67714" i_length="1484">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="67713" g_stop="67621" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="714" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="67620" i_stop="66726" i_length="895">
            <donor d_prob="0.491" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="66725" g_stop="66516" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="919" r_length="205" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="981" polyA_stop="994"/>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E699584" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>924</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77480" e_stop="77456"/>
          <exon e_start="75808" e_stop="75761"/>
          <exon e_start="74174" e_stop="74109"/>
          <exon e_start="73676" e_stop="73624"/>
          <exon e_start="72732" e_stop="72667"/>
          <exon e_start="71660" e_stop="71586"/>
          <exon e_start="69950" e_stop="69876"/>
          <exon e_start="69604" e_stop="69534"/>
          <exon e_start="69440" e_stop="69389"/>
          <exon e_start="69287" e_stop="69198"/>
          <exon e_start="67713" e_stop="67621"/>
          <exon e_start="66725" e_stop="66516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCACCTGTGGAATGATTCTCGGTGAAATTTCTTTTATATATGCAATTTATATTTTTGTATGTTTCTGTTGAATGTGTCGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTAGGGGTGGGGTGGTGGAGGGGGTACATGGGGTTTGATCTGTGATGATCATTCTTGATTAGGATGGTATTTTTTTTTTCTTCTGAATTTACATTTTGAAGTGGATTTTTCTGGTTTGTTTTGGGGAGTTTGATACTCTATCATCATTTTTTGATTGGTATTTTAAGGAGAAAAAGAAAAAAAAAAGGAAATGCTGATTGTTTAGTAAAGATAAGATTTTAGTGTGAATTGTTTGTATGGCATGGTGGAACAGTTGATTTATGAGTGTGGTTGAAGTAATGGTATTATAGGGATGTTTTGAATGAACTGACTTCACTTAAGCTGGGAAAATTGGTAGTTGTTCTGTAAAGGATAACAAAAGATAATAACAGATGGCTAGGTTCTTATTTAAAACTATGAATTTGCAAATATTTAATTGGGTTTGAGGGGAAGTTTACTTTTGATTAGCTTCATTGCTTTCTGATTTTGGTTCAGATTATGGTGTAGAAGGAATAAGGCAATTAGTATTATTCCCCCTGTGAAGCTGTAATGTCTTACAGTTAGTTCAAGGGAGTTCTTTTAACTTTAGATCATCCCCCGAAACCATAATTCTCTAGTATAATCACCAGTACTTCTTGTGTTTATGAACGTCCGTTGATTAATATAAGGTTCTTATTAATAAGGGTGAGGTAATGCAAAACTGAATTGGTGCTTTTATGAGATGAATACCATTGATTTCTGAAGCTTACAGTATGATCAAAATTTCATTCTTTTTTGTTCATGGATTAAATGACACAACACAATAAGCTTTGCTATCATTAACTATTAACTTGATTAGAAAATGAGAGTCCTGGACAATAAAACATAAGCACAACAGAGACAATTATAAAAGAAAGCATTTAAGAAACTTGTAGGAGCATGAACCGTCAGATATTGGATGAATCTTTGGTAAAGATACATGCTGGTTTCTTTCATTTCGTTTTTCAGGAGCGTGGACAACCATATAATTCGTTTTTCAACTTAAAATGCTGGAGGAAGTAAAAGTTATCTTTCTGGTCCTTGACCATACCTTTTGTGGTCTTTTCCTTCAAAAAGAAATTTATGAATTTGCTTAAACTTTGGATTTTCTCTGTTTCCCGTTTTCTATTCTGATAATAGAATACATATTTTGACGCCATGGGTTCATACCCTGTTGCTGACGAAAGCCTCTTATTTTAGTGGACAAGGGTAGAAAAGTGAGCCCCCATCGAGTTCCGAACATTTCGCCACTGGCTCTCTGGGATTTCACAGTTTTAGAAAAGGATAGAGAACATATTTCAATTTTTACAGATATGGACTTCTGGTTTTCCTGGTTGGCTTGTTGCTGAATTGAAACTGATGAATATTTGTGGCATGATGTGCAGGAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGGGTAACTTTTCTTGGTTTATAGTACATTATTTTAAATGATATGTTTTTTCTTTTATGTTCTTGGAGGGTCTAATATTTTCTCGGTTTCTCCATTATTCTTCTCACTCATAGTTGCTGTGGTATCTAACAATCAAATCAGTCCTCCATGTTACACTCTGTGCAATACCAAATAATCACTATGAATTATATTACTATTAAGGTACACTATTGGTGGATTTTTTAACTAACTATTTAAACATTTTTGGCAGCTCATCTTAGTGAAAGTAGTAAATGCTCGCTCTAATTAGTCCTTTCTTTTGTAGTTATTGTAGTTTCTACTTTTCAATGAGATTCCAGTGGGTGCAATATCAAGGTTCATTTGAGGGATTCTTAATTCATACTGTAGCTAGTTGAAAGCTTTTGACACGTCATTTTGTGCTTAAGCTTGGTAAAATTAGGGAAGAGTTTTCATAGTAAAAAATTAGGGAAGATTTTATTGAAGTTGAGAGAAAACAAGTATGCTGTTATAGAATGAGGAAAAAGTATTTTGATGATTCACATGAGATCTTTCTCTGCATTTTTCCTTGTAATTATTCCTTAAATATGATCCAAGGTTGTTTTTTAAAGCATTCACAACATGTGTCAGACATTTTCTCCCTTTTCTACTGGTCTTACGCAATCCAATTAGTATTAAAGTGCTGAGGAGATGAGATCCCACAGTTGAATGACCTCGCGTAATGCAACAAGAGATGGTTAGTGTCCTTTCAGCACTCTTGCACATACACGAACTCACCGTAGTCCTTTCTTTCAGATTGTCGGCCATGGGATTCTTTTTCAAGCCACAGCTCCTTCGATTATCGGCTGTGTGGGTTGTGTTTTGTGCCACACACCACGTGAAGAAGGTGACATATATGGCGCCTTGGTATTCCATATTTTCTTCTACTCGTCAGTGTTGCTGCCCCAACTTTTTTCGGTAAAAATCCTTGTAGCCAACCGGCCCCTATCAACCTTCACATTCCCCTTCTCCTCTATGTTTAGATTATAAACTCTGGGAAAGGATTCCTAACTTTCTTTGACTCTGAATTCTGGATTACCTTCCCGAACCTTATGTCCCATTTTTTTTCTTTCCCTGTTAGATCAGTCATTGCTGCGCTTCTCACATATACAATAGCATGCATTAAACAGCATGCGTCTCCCCACACTATGTGCCTTTCAAGATATATGCTCTATTGCCATTTTCAATGATGTAACCAACAAACCTTGTGAACTCATTACTTGCTCCTTGTGATCCCTTTTCCACAAACCTTCTAAATTTGCAAAAGATGCTTTCTGGTATCAAATTGTCCAGATATAATACTTATCAGGAAAACGACCAGTCCATTTTGACCATGGATCTGGAACAGGATTAATTGTTATGTTTATCTTTTAGCGTACTTCATCGAAAACAATTTTTTTTTGAAGTACCAACACTGTAAGATCTTCTAGTCTAAGCACTCCTTATTCTGCTTCACTCCAGATGTTAATTGTAGTCATTACTTGAGATGTTCTTAGTATTCCTTTAGACTGTACTCTAATCTAATGTAAGTTCTTGTAACTGACTTCCTGCAGACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAGGTTTGTGTTGTTCTGTGAATGTTTTTAGGCTTGCATGTGCTCTATGTTGTTAAAGGCTAGACTGAGGTGCACTCAAGCATTGAAGCTTGGTGCAGCATGAGTTGGGCGCTTCTCACTCTTGAGGCATTGCTTCAGTCCAGGCACTAAGAAGCTAGGCATAATTTCCATAAACTCTTTCTTGAAGTGCACGGTACTATATAATAAATGTAGTTGGAAAAACAAATTAATTAAGAGAATATTTTGAATAAGTTTGTTTACATAGCAACTTACCTGATATGTACAAGAAAACTAGTAACTAACCCTGAATTAGAAACTTAAAACGTCATAATTTTATCTGTATATTTAAAATGATTTTGGAACTTGATTTATATTTTGTTTGATACTTTGACATATTCACTTTTCAATTCAATAATCATTTTTCTTTGAGTTCAGGAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATATGTAAGTCCAAGCAAATGGTCTCTGTTGTTTTCTCAACTTCTGTGATTTGTCAGTGAAACTATACAACAGTTTGAAATTGTTGCCATTTGCATGATTGTAGTCGGAAAATACCTAAAAACAAGAAATACATAATTGCGTGATAGAAATGGTATTAGGTTGTATTTTATCTTCGGAATGAGTTCTTAGCAACTAATGTTATCGTTTTTGGGTTGCATTTTCTCAACTTTAAGCCATCTAATGTACGATTTATAGTAAGATGTACTGGTAAATACTGCTGGTAGACATATATTTAGCCATGTTCCCTCTTCCAATGACTTCTCCCCATGCAAGTAGCCAACAAAAATTGTTTACCTTTTTGGCCTTCCTAGTATCCATGCTAGTCAAGTAGGTTGGCACTGGGATGAGGTTTGTGTATGCAAATGTTCAACGAGTCTTTAGATGGTGACATGTTAATCAGGTAAGGTCTTAGGTGAATGAACAGAATGTAATTTTCAGATCTCCGAGAATATCAGTTATGTGTAACGACCAACACATGTTCTCATGAAATTGAGTTTCTTGTTCTGTCTATGTTTTGACCAGCAGAACATACTTGGTTTAGAGTACCAGATTGTGTCCTCTAGAATCACTTCTCAGGAAATGAGAAAGTCATCTTCATTAATATGTATGGTCTTCGTTTTTTGTTTTGAACAATAAATGGAGAATCTCTTTTGACATTCTCAGACTTAGATGAACCAGTCAATTTTTTCCTCAGCTGAGAACTAGAAGAATGTGCCTTAGAGAAAATCCATCCATATTGGACTATGTTTTTCTGTAACTTAAACTGACCAGCTGTATGGATGTCAGTTACTGCTTCATTTTTAATTATGTTAATTTGTCATAATGCTGCTGCAGGTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAGGTAGGCCAGTTCTTTTTCTATTATCTTCCTTCCTATCATTGCATATCTCTATGTTATTTGATAATATATTATTTCTCTTAGTAATACGCTTAACATGTTTTTGGTGAGATAAAATCTTGGTTGATAATATAACTGATTGATAATATATGTGGGAGTGTATTTGCACCTAAGGGTGTGGTTTAGATAATGAAGTGAGTTCAAATCATAGAGATCAGGGTCTAAATTCCAGCAGAGACAAAACCATTAGGTGCTTTTTTATCTGCCTAAGCCTTAGTGGCAAAGTTGCCCGATGGTCTATGCTGGTGGGAGATAGCAAGGTACCTAGTGAAATAGTCGAGGTGGGGCAAGCTGGACTGAACACCACCATCATAAAAAGCTGGAATGTAGAATTTTTAGAGGTTCTTTTATGGTCCTTGCTTCAATTTACCAATAATATATGCATTTTTATTTACCAAATTCCAATAGATAGACTTCAATTGCATCTTGGGTTTCCCCAATATATATCAGATCCAGAAGCATCTGTGAATTCAGAAACTTTGTAATTAGCTTCTCTTTGGATTGAGAACTACTGACAACTTCTATTTGATAATCAAAGTGAGACATATTTAGTTAATTTAGTTTAGCACTATGGAGAACATATTTCATTATGCTTAATTGGTCACTGTTTCTTTTGGCAACATTGTTGTGTCTTTTGTTCACAACCCATGAAAAAGAAAAAAAGAAAAAAAGAAAAAGAAGAAATCAAGTGTGAAAAATCACTTAAGAATGTTAATTATGAATTTCAATTGAACAATCGAGCGTTATGCCTTGGCCATATTCACAGATGGATGGATGGGAGAGGCGGGAAACGAGGTGAAGATGTGGAATAGAATATTAATACATTAATCCTGATCTTTAGATGTGCTATCAAATAGATGGATGATATTACTAGGTCTTTTGCGATTTTTAAAAGTACCATCTATTCATAGTGATAATTTGGGAAATGTATATCATATTGCCTTCACAGGAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAGGTATGCTCACTATGCAAAATCACTCTCTCATATGCAGCATCTATTATGATCCTTTTGGTAGTTTTGATTTCCGTACTTCTATTAAATAAATGTGCTTGGTGAGTTTCCACAATTTCTTAACAGTAAGTTACTTTTGCCTATAAAAGTACTCTGGTGTAATGTTCAAGTTAGAGTTTTTGCTTTGAAGTTTGTCTCTAGAAGAGCACTGACTTTCAAATACCACCTCAATTTGTATTTCTTTTGTGACAGTTCTACCCATTTTCTGTTTTTAGCGTAGAGGAATTTAGTTCAAACGTGTGCTTCACAGTAGGGTATAGGGAACAGATCAGATTTCACATGATAAATGGTTATGCAAGTGCACCTTGAAAGAGGAATTCCTTGAGTTGTTTCTGTTTGTAAGACATAGGCTACTATTAGCAACTCATGCAACATTGTATTTAGGAGAAGACAGCTTGATGGAGTTATTTGACTAAGCTGGATGAGCGTAAGACTTCATCTTCAGGTAAAGGGCAGGCTGAAATGGGGCAATAGTGAAAAAGGGAAGTTCATTGTGAAAGCATGTTTTATACCAACCATTACGGGAACAACATAATATTGAAGAATGGCTCCATGATATGGAAAACAAGTGCCAACTAACGTAGCCTGCTGCAGTCAGATAGAATTACTTAAAGCCTTCTTTACACAGGACAATCTGATTAAGAGAGGAGTCATTATGTGCAACCAATACTAGATGTACAGAAGAAGCTGAATATTACCTCTTTCTTCACTGCCTATGGCAAAGGACATGTGTAATATGTTTTGTGTCTTTTAGGGGTATTTCAGTAATGCACTGCAGTCTCAAAGATGCTTACATTAGTTGGGACAATGGAGAGTTGTAAAAGCCATGAAGGTTATTTGGCAAATGATCCCAGCCTGCACTCCCTGGAGCATGTGGAGGAGAGGAACTACAGATGCTTTGATGGAATCTCAAGTCCTAGTCATTCCTTAAAAGACTGTGGGTGTGTGGTGGACCTTCTGTGCAAATTGTGCACAGTAAATAATTTGATCAGCTTATGAATTTTGTTAGCTCCTTCTGTTTTACGAGTTTCAGAATCAAACTTCACAAGAGCTATGTCTTTTTTTAATACTTATTTGTATCTCGTGAATGCTTGTTAATGAAATCCTATACTTCATCCAGAAAAGGTAGGTGATTAGCTCTCTCTCCTCAATGAAAAAAAACGTAACGAGGAAATATAAGATATGCTTTAGCTTTCCTAGTTTGAACTTTGAAGGAGCGAGTTATTGAAGAATATGGCAACAATCATATAGATGAATAGGACTTCTCATACGATGAACGTGCTTTTTCAAAAGTTAAATGACTTCTCTATTTTTAGGTTTGTCATTGCCCTCTGAAAGACTAGTCTACCTCAATCCTTTGTCAATCAACTAGATAGATGAAATCATCTTTTATGCTATTTCTTTGGATCCAAGCTACATGATTTGAAATTTTAGAAAGTTCTTCCTTTGCGGTTTGATCTTATACAACTGTAGTTTCTATGAAATGCTATGATTGCGATTTGTCATTTTCTTCTTCCTTGTTTTTAGTGCTTGAAGTCCAATTTGATTGATAGCTTCTTCTTCTTCTTTTTTCACTAGGGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAGGTCCGTACAGCTCAAGGTCCTCTAAATCGTTCTCTTGTTCTCTGTTCCCTTGCTGAAGCATAACATGATATGTTACTTTGTCATTATGTTTTCAAGTTAACAATGTATTATTATCCCATTGGGTATCCTATTTTTAATTTTAACCTGCTCTTTTTCCCAGTGTTTACAATTGAATGTTTTACTGTATAGGACATTGTGATTATGTGGTCACTTGTATTTGACAATTTTGGTCTTATGTTGGTGAAATTCTCTGTGTTCCTGTAATTTTCAGGCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAGGTATGTATTATGACATTTGGTTTTTCAGTTTACCGTTGTGAGATGGCTGGCTAATATATGTCAGTATCAAGGCTAACATCTGCAGAAGCACAGGTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGTGTAAGTTCTTTCTCAATAGTTTGTCACTTCTATTATTGGCTTATTGCTCTGTTTGTCTATTTCTCTTCTCAAAATGAGAGAAATACTTGCTTATTTTGCAGTTTAATGTGAAGCGTGGAGGTCAAAGAATAGCTACAATGCTCATGTATTTGAGCGACAATGTGGAGGGGGGAGAAACATACTTTCCTATGGTAATCACTAATGAATGATGAAACCTTGATTAATAACTTCTTTTTTGTATTATTGACACTCCATTTTCTCTGGTAGAGTACTCAACTTAAATTGTATGAAATGAATCTATTGTTGGATGCCTTAGTCATATTCAGTCAAATAATTAAGGAACAAAAATTATTTGTACTGACACTTCATAATCCTGGTATTTAATGAAAGCTTCATGTCTCTGTACTATCAATTTAAGTGCTATGTGCGTATTTTCAACATATCAATCAATATTTGATCACTTAACTAGGGGTTCCATGCAAAATTTGTATAATTTTGAATGGAGCTGCTTTGGATGTAGACATTTATATGGTGCTGGAACTTGTCCATAACCTTGTGTTTACCAGTTATATCATCTTTTTGCCCTTTACATTTGTTGATAGAAGAATTATCTGTTATATAAGGAACATGCCGAGTCTTAGTTGCAAATACTTTTCCTTTTATTTGATGTATGCTAAGTCTACAAATTTTGGGTGGACGCCCTGTGAACAAAAAGAACAAAAATTGCTTAATCAGTAGTTTCTGGAGGAATTTGTTTGCTTTTATAATATTTAGTTTCTTGAGGGTTTGTGATTGCTCACTGCTGTCAAGAATTTTCTGCTGCAATTATTGTTCTTCTGTATTTCTTGCGAATGTTGCTTGAAGATAAGTTTGAATTGATTTTATGTTGCAGAAATCAATAAACATTCCATTTTTTGTCTATATTCCAAAAGATTGGAAACTTGATTTCTTTCTGTTTCATAATTGAAAGACGTGACACTAGAAAGTTCAAGTTTTGGTGATTTTAGCTTTACTGTATATCATGCCAGTATTTTCTTTAATTCGCATACTAAATTTTCCCTTGTTTTATCATGAGCATAACATTAAACCATTATTTTATCCGAGCAAAATAATTGTAATCCTAAATTGTCTAAACGAATTAAATCAAATTTTACAGCCTATAATCTTCTCACATTTCTATATTTATTGTATAACTAGTAGTAGCTAGTACAGATTTGAATGGTGGTTTGCAATTCGATAAGGGTGTAGGCATGGGAATAGTTTGCGCGGTCCGAGAGGCAGTATAGGAGTTGGGAAAAAAAGGGTGGAGGGTATAAAAAGTCTACCGAGTTGTTAAGGTTTTGTTAAATTTTGTTTACCGCTTTTTGAAAGGATTGAACTGGCTTATTTCAGATATGATTATGTGCTAAGTCTACTGAGCACAACATTTCAGGGAGAAATTCCCAAAATTAAGCTTTCACTTCCGGGCCAGAATGAAATTTGTCTTGTTATGTATGCTGTTCCCTGGAAATGTGTTACCAGGCCATATATGTTTCTTTTTCCATTTTTTCTGGTTTACCTGACCGTACATGTCGATTCCACCAACTTTGGTTGCCTTCCCCTATCTTTTGCGCAACTTTTTTCCCCCAGGTTTCTAGTTTCATGCCTGTGTTTTAATTTCAAATGCTGTCATCAGGCTGGCACTGGTAAATGTAGCTGTGGCGGCAAAATGATCCAAGGGTTATGTGTAAAACCTACGAAAGGAGATGCTGTTCTTTTTTGGAGTATGGTTAGTATTTTCACCTGCTATAAACCTTTTCGCTGGAACTTTTGACGAAAAATTCATCTATGGAACCCTCTTAAGTACTTCGAAAATGTTGGCCTAGTTGCTTTAAGATTTTAAGAACTGCAACATCTTGTTAGTCATTTTACTTGGCATCCATAATGTGTCACACACTCAATATTTCTAGCCAAAGTCTCCTTAATTGAATCTAGTTCCTTTGTGCATCGTTTGGACTAGATGGGATATGAGACTATTGTTTCATTTATTTACTGGATACACAGAGTTTCTTATTTTTGAACATGTATTAGAATTTTATACATAAAAGCTTCTGCCGCAGAGTACCAACAACATAGTGTAGACCTACAAGTGGAGTCTGGAGAGGGTAGAGGTGTAGGCAGACCTTACCCTATCTTGGGAGGTAAAGAGGTTGTTTCCGATAGATCCTTAGCTCAAGGAAAAACATTCCAAAACTGATCGGGAAAAAAAAGGAAAGAAATAACGGTAGTGAAGAAACCATGGCAAAATACTGTAGAAACCATGTCAAAGCATTCTGGAAAAAGAAAGAATGAATTGAAGGAATGTTACTAAAGGGACATCAGGTGTGTTATTGGGACCCTTATGCCCCTCCCAGAGCTTTGGTCTAGTAATTAGAGCGGGCGCGTGATGTATGAATGAGGCACAGGTCACGTGTTTGAATCTTGCCACAGATAAAAAGTCTGGTATGTAAGTGGAGAAAGATAGAGAGGTCCTGGTACTTCATCCGAGTTTCAAACCGTGTGCTACTAGCACTCGGGGATTTCTCAGTTTTCATATTAGTTTTTAAATATCTATTATCTTTAAAACCTTTTTTTCTTTCTGAAACCATGAATTCCACTTGATCAATGCTGTTTTTTCCTTTTAGGGGCTTGATGGACAATCTGACCCTGATAGTCTACATGGAGGATGTGAAGTACTCTCAGGAGAGAAATGGTCAGCTACTAAATGGATGAGGCAAAGAACTGTATCCTAAATTCCTCATACATTTCTTCTTCTTTTTTCTTTTTTTTTTCGTTCTATCTATATTGTATCTTGATAGGAAAAAAAAAGGAGTTACATGACTTTTGTAAAATTA</genome_strand>
        <mrna_strand>CTTGTCACCTGTGGAATGATTCTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTAAGTGCAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG...............................................................................................................................................................................................................................................................................GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAG.............................................................................................GTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGT.....................................................................................................TTTAATGTGAAGCGTGGAGGTCAAAGAATAGCTACAATGCTCATGTATTTGAGCGACAATGTGGAGGGGGGAGAAACATACTTTCCTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCACTGGTAAATGTAGCTGTGGCGGCAAAATGATCCAAGGGTTATGTGTAAAACCTACGAAAGGAGATGCTGTTCTTTTTTGGAGTATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTTGATGGACAATCTGACCCTGATAGTCTACATGGAGGATGTGAAGTAATCTCAGGAGAGAAATGGTCAGCTACTNAATGGATGAGGCAAAGAACTGTATCCTAAATTCCTCATACA--T-TTCTTCTTTTTT-TTTTTTTTTTGGCCCCACCCAAATTGAACCCGGAAAGG-AAAAAAAGGGAGTTACTTGCCTTTTGAAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332221" ref_strand="+" ref_description="SGN-E332221 [cTOD-17-I11]">
      <seq>agaactagtctcgagttttttttttttttttttgatttgtctcctccggcatttgccgtttcgatcatagtaatcatcagtggtgttgattacttgattggattggagttaatctggactaattaaaaaccccatgtggaaaaaaagggaaaaaatttaaatggtgatacatatgtgtgtttgttttggaaatggaggtttaaactttaaagattgaatctttaggggtggggtggtggagggggtacatgngggtttgatctgtgatgatcattcttgattaggatggagctttaattcaattagcatttattcgtaggatggaggactcactggacagagaattttcttttggtggaaagcatgcaagtttagctggcagcaattttccgttagcaagaggaatctctaattggcctcatgacaaagatgccatagcactgcgtgtaggatatgtgaagcctgaaataattagttggaaaccaagaattgtattatttcacaacttcttgagtgcagagggagttaagagtgatgtcagaacaagttctggtatgtttctgaaccctgatgagaggaagtatcccatgatacaggcaattgaaaaacgaatttctgtgtattctcaaataccagtagaaaatggggaactcattcaagtgttaaggtatgaaaagaatcagttctatagagcccatcatgactatttctctgatagttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="77696" stop="69085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77468" g_stop="77456" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.692"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77455" i_stop="77400" i_length="56">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77399" g_stop="77125" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="288" r_length="275" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77124" i_stop="75809" i_length="1316">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75808" g_stop="75761" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="336" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75760" i_stop="74175" i_length="1586">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74174" g_stop="74109" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="402" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74108" i_stop="73677" i_length="432">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73676" g_stop="73624" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="455" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73623" i_stop="72733" i_length="891">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72732" g_stop="72667" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="521" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="72666" i_stop="69951" i_length="2716">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69950" g_stop="69876" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="596" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69875" i_stop="69605" i_length="271">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69604" g_stop="69534" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="667" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="69533" i_stop="69441" i_length="93">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="69440" g_stop="69389" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="719" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="69388" i_stop="69288" i_length="101">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="69287" g_stop="69282" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="725" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E332221" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77468" e_stop="77456"/>
          <exon e_start="77399" e_stop="77125"/>
          <exon e_start="75808" e_stop="75761"/>
          <exon e_start="74174" e_stop="74109"/>
          <exon e_start="73676" e_stop="73624"/>
          <exon e_start="72732" e_stop="72667"/>
          <exon e_start="69950" e_stop="69876"/>
          <exon e_start="69604" e_stop="69534"/>
          <exon e_start="69440" e_stop="69389"/>
          <exon e_start="69287" e_stop="69282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATGATTCTCGGTGAAATTTCTTTTATATATGCAATTTATATTTTTGTATGTTTCTGTTGAATGTGTCGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTAGGGGTGGGGTGGTGGAGGGGGTACATG-GGGTTTGATCTGTGATGATCATTCTTGATTAGGATGGTATTTTTTTTTTCTTCTGAATTTACATTTTGAAGTGGATTTTTCTGGTTTGTTTTGGGGAGTTTGATACTCTATCATCATTTTTTGATTGGTATTTTAAGGAGAAAAAGAAAAAAAAAAGGAAATGCTGATTGTTTAGTAAAGATAAGATTTTAGTGTGAATTGTTTGTATGGCATGGTGGAACAGTTGATTTATGAGTGTGGTTGAAGTAATGGTATTATAGGGATGTTTTGAATGAACTGACTTCACTTAAGCTGGGAAAATTGGTAGTTGTTCTGTAAAGGATAACAAAAGATAATAACAGATGGCTAGGTTCTTATTTAAAACTATGAATTTGCAAATATTTAATTGGGTTTGAGGGGAAGTTTACTTTTGATTAGCTTCATTGCTTTCTGATTTTGGTTCAGATTATGGTGTAGAAGGAATAAGGCAATTAGTATTATTCCCCCTGTGAAGCTGTAATGTCTTACAGTTAGTTCAAGGGAGTTCTTTTAACTTTAGATCATCCCCCGAAACCATAATTCTCTAGTATAATCACCAGTACTTCTTGTGTTTATGAACGTCCGTTGATTAATATAAGGTTCTTATTAATAAGGGTGAGGTAATGCAAAACTGAATTGGTGCTTTTATGAGATGAATACCATTGATTTCTGAAGCTTACAGTATGATCAAAATTTCATTCTTTTTTGTTCATGGATTAAATGACACAACACAATAAGCTTTGCTATCATTAACTATTAACTTGATTAGAAAATGAGAGTCCTGGACAATAAAACATAAGCACAACAGAGACAATTATAAAAGAAAGCATTTAAGAAACTTGTAGGAGCATGAACCGTCAGATATTGGATGAATCTTTGGTAAAGATACATGCTGGTTTCTTTCATTTCGTTTTTCAGGAGCGTGGACAACCATATAATTCGTTTTTCAACTTAAAATGCTGGAGGAAGTAAAAGTTATCTTTCTGGTCCTTGACCATACCTTTTGTGGTCTTTTCCTTCAAAAAGAAATTTATGAATTTGCTTAAACTTTGGATTTTCTCTGTTTCCCGTTTTCTATTCTGATAATAGAATACATATTTTGACGCCATGGGTTCATACCCTGTTGCTGACGAAAGCCTCTTATTTTAGTGGACAAGGGTAGAAAAGTGAGCCCCCATCGAGTTCCGAACATTTCGCCACTGGCTCTCTGGGATTTCACAGTTTTAGAAAAGGATAGAGAACATATTTCAATTTTTACAGATATGGACTTCTGGTTTTCCTGGTTGGCTTGTTGCTGAATTGAAACTGATGAATATTTGTGGCATGATGTGCAGGAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGGGTAACTTTTCTTGGTTTATAGTACATTATTTTAAATGATATGTTTTTTCTTTTATGTTCTTGGAGGGTCTAATATTTTCTCGGTTTCTCCATTATTCTTCTCACTCATAGTTGCTGTGGTATCTAACAATCAAATCAGTCCTCCATGTTACACTCTGTGCAATACCAAATAATCACTATGAATTATATTACTATTAAGGTACACTATTGGTGGATTTTTTAACTAACTATTTAAACATTTTTGGCAGCTCATCTTAGTGAAAGTAGTAAATGCTCGCTCTAATTAGTCCTTTCTTTTGTAGTTATTGTAGTTTCTACTTTTCAATGAGATTCCAGTGGGTGCAATATCAAGGTTCATTTGAGGGATTCTTAATTCATACTGTAGCTAGTTGAAAGCTTTTGACACGTCATTTTGTGCTTAAGCTTGGTAAAATTAGGGAAGAGTTTTCATAGTAAAAAATTAGGGAAGATTTTATTGAAGTTGAGAGAAAACAAGTATGCTGTTATAGAATGAGGAAAAAGTATTTTGATGATTCACATGAGATCTTTCTCTGCATTTTTCCTTGTAATTATTCCTTAAATATGATCCAAGGTTGTTTTTTAAAGCATTCACAACATGTGTCAGACATTTTCTCCCTTTTCTACTGGTCTTACGCAATCCAATTAGTATTAAAGTGCTGAGGAGATGAGATCCCACAGTTGAATGACCTCGCGTAATGCAACAAGAGATGGTTAGTGTCCTTTCAGCACTCTTGCACATACACGAACTCACCGTAGTCCTTTCTTTCAGATTGTCGGCCATGGGATTCTTTTTCAAGCCACAGCTCCTTCGATTATCGGCTGTGTGGGTTGTGTTTTGTGCCACACACCACGTGAAGAAGGTGACATATATGGCGCCTTGGTATTCCATATTTTCTTCTACTCGTCAGTGTTGCTGCCCCAACTTTTTTCGGTAAAAATCCTTGTAGCCAACCGGCCCCTATCAACCTTCACATTCCCCTTCTCCTCTATGTTTAGATTATAAACTCTGGGAAAGGATTCCTAACTTTCTTTGACTCTGAATTCTGGATTACCTTCCCGAACCTTATGTCCCATTTTTTTTCTTTCCCTGTTAGATCAGTCATTGCTGCGCTTCTCACATATACAATAGCATGCATTAAACAGCATGCGTCTCCCCACACTATGTGCCTTTCAAGATATATGCTCTATTGCCATTTTCAATGATGTAACCAACAAACCTTGTGAACTCATTACTTGCTCCTTGTGATCCCTTTTCCACAAACCTTCTAAATTTGCAAAAGATGCTTTCTGGTATCAAATTGTCCAGATATAATACTTATCAGGAAAACGACCAGTCCATTTTGACCATGGATCTGGAACAGGATTAATTGTTATGTTTATCTTTTAGCGTACTTCATCGAAAACAATTTTTTTTTGAAGTACCAACACTGTAAGATCTTCTAGTCTAAGCACTCCTTATTCTGCTTCACTCCAGATGTTAATTGTAGTCATTACTTGAGATGTTCTTAGTATTCCTTTAGACTGTACTCTAATCTAATGTAAGTTCTTGTAACTGACTTCCTGCAGACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAGGTTTGTGTTGTTCTGTGAATGTTTTTAGGCTTGCATGTGCTCTATGTTGTTAAAGGCTAGACTGAGGTGCACTCAAGCATTGAAGCTTGGTGCAGCATGAGTTGGGCGCTTCTCACTCTTGAGGCATTGCTTCAGTCCAGGCACTAAGAAGCTAGGCATAATTTCCATAAACTCTTTCTTGAAGTGCACGGTACTATATAATAAATGTAGTTGGAAAAACAAATTAATTAAGAGAATATTTTGAATAAGTTTGTTTACATAGCAACTTACCTGATATGTACAAGAAAACTAGTAACTAACCCTGAATTAGAAACTTAAAACGTCATAATTTTATCTGTATATTTAAAATGATTTTGGAACTTGATTTATATTTTGTTTGATACTTTGACATATTCACTTTTCAATTCAATAATCATTTTTCTTTGAGTTCAGGAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATATGTAAGTCCAAGCAAATGGTCTCTGTTGTTTTCTCAACTTCTGTGATTTGTCAGTGAAACTATACAACAGTTTGAAATTGTTGCCATTTGCATGATTGTAGTCGGAAAATACCTAAAAACAAGAAATACATAATTGCGTGATAGAAATGGTATTAGGTTGTATTTTATCTTCGGAATGAGTTCTTAGCAACTAATGTTATCGTTTTTGGGTTGCATTTTCTCAACTTTAAGCCATCTAATGTACGATTTATAGTAAGATGTACTGGTAAATACTGCTGGTAGACATATATTTAGCCATGTTCCCTCTTCCAATGACTTCTCCCCATGCAAGTAGCCAACAAAAATTGTTTACCTTTTTGGCCTTCCTAGTATCCATGCTAGTCAAGTAGGTTGGCACTGGGATGAGGTTTGTGTATGCAAATGTTCAACGAGTCTTTAGATGGTGACATGTTAATCAGGTAAGGTCTTAGGTGAATGAACAGAATGTAATTTTCAGATCTCCGAGAATATCAGTTATGTGTAACGACCAACACATGTTCTCATGAAATTGAGTTTCTTGTTCTGTCTATGTTTTGACCAGCAGAACATACTTGGTTTAGAGTACCAGATTGTGTCCTCTAGAATCACTTCTCAGGAAATGAGAAAGTCATCTTCATTAATATGTATGGTCTTCGTTTTTTGTTTTGAACAATAAATGGAGAATCTCTTTTGACATTCTCAGACTTAGATGAACCAGTCAATTTTTTCCTCAGCTGAGAACTAGAAGAATGTGCCTTAGAGAAAATCCATCCATATTGGACTATGTTTTTCTGTAACTTAAACTGACCAGCTGTATGGATGTCAGTTACTGCTTCATTTTTAATTATGTTAATTTGTCATAATGCTGCTGCAGGTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAGGTAGGCCAGTTCTTTTTCTATTATCTTCCTTCCTATCATTGCATATCTCTATGTTATTTGATAATATATTATTTCTCTTAGTAATACGCTTAACATGTTTTTGGTGAGATAAAATCTTGGTTGATAATATAACTGATTGATAATATATGTGGGAGTGTATTTGCACCTAAGGGTGTGGTTTAGATAATGAAGTGAGTTCAAATCATAGAGATCAGGGTCTAAATTCCAGCAGAGACAAAACCATTAGGTGCTTTTTTATCTGCCTAAGCCTTAGTGGCAAAGTTGCCCGATGGTCTATGCTGGTGGGAGATAGCAAGGTACCTAGTGAAATAGTCGAGGTGGGGCAAGCTGGACTGAACACCACCATCATAAAAAGCTGGAATGTAGAATTTTTAGAGGTTCTTTTATGGTCCTTGCTTCAATTTACCAATAATATATGCATTTTTATTTACCAAATTCCAATAGATAGACTTCAATTGCATCTTGGGTTTCCCCAATATATATCAGATCCAGAAGCATCTGTGAATTCAGAAACTTTGTAATTAGCTTCTCTTTGGATTGAGAACTACTGACAACTTCTATTTGATAATCAAAGTGAGACATATTTAGTTAATTTAGTTTAGCACTATGGAGAACATATTTCATTATGCTTAATTGGTCACTGTTTCTTTTGGCAACATTGTTGTGTCTTTTGTTCACAACCCATGAAAAAGAAAAAAAGAAAAAAAGAAAAAGAAGAAATCAAGTGTGAAAAATCACTTAAGAATGTTAATTATGAATTTCAATTGAACAATCGAGCGTTATGCCTTGGCCATATTCACAGATGGATGGATGGGAGAGGCGGGAAACGAGGTGAAGATGTGGAATAGAATATTAATACATTAATCCTGATCTTTAGATGTGCTATCAAATAGATGGATGATATTACTAGGTCTTTTGCGATTTTTAAAAGTACCATCTATTCATAGTGATAATTTGGGAAATGTATATCATATTGCCTTCACAGGAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAGGTATGCTCACTATGCAAAATCACTCTCTCATATGCAGCATCTATTATGATCCTTTTGGTAGTTTTGATTTCCGTACTTCTATTAAATAAATGTGCTTGGTGAGTTTCCACAATTTCTTAACAGTAAGTTACTTTTGCCTATAAAAGTACTCTGGTGTAATGTTCAAGTTAGAGTTTTTGCTTTGAAGTTTGTCTCTAGAAGAGCACTGACTTTCAAATACCACCTCAATTTGTATTTCTTTTGTGACAGTTCTACCCATTTTCTGTTTTTAGCGTAGAGGAATTTAGTTCAAACGTGTGCTTCACAGTAGGGTATAGGGAACAGATCAGATTTCACATGATAAATGGTTATGCAAGTGCACCTTGAAAGAGGAATTCCTTGAGTTGTTTCTGTTTGTAAGACATAGGCTACTATTAGCAACTCATGCAACATTGTATTTAGGAGAAGACAGCTTGATGGAGTTATTTGACTAAGCTGGATGAGCGTAAGACTTCATCTTCAGGTAAAGGGCAGGCTGAAATGGGGCAATAGTGAAAAAGGGAAGTTCATTGTGAAAGCATGTTTTATACCAACCATTACGGGAACAACATAATATTGAAGAATGGCTCCATGATATGGAAAACAAGTGCCAACTAACGTAGCCTGCTGCAGTCAGATAGAATTACTTAAAGCCTTCTTTACACAGGACAATCTGATTAAGAGAGGAGTCATTATGTGCAACCAATACTAGATGTACAGAAGAAGCTGAATATTACCTCTTTCTTCACTGCCTATGGCAAAGGACATGTGTAATATGTTTTGTGTCTTTTAGGGGTATTTCAGTAATGCACTGCAGTCTCAAAGATGCTTACATTAGTTGGGACAATGGAGAGTTGTAAAAGCCATGAAGGTTATTTGGCAAATGATCCCAGCCTGCACTCCCTGGAGCATGTGGAGGAGAGGAACTACAGATGCTTTGATGGAATCTCAAGTCCTAGTCATTCCTTAAAAGACTGTGGGTGTGTGGTGGACCTTCTGTGCAAATTGTGCACAGTAAATAATTTGATCAGCTTATGAATTTTGTTAGCTCCTTCTGTTTTACGAGTTTCAGAATCAAACTTCACAAGAGCTATGTCTTTTTTTAATACTTATTTGTATCTCGTGAATGCTTGTTAATGAAATCCTATACTTCATCCAGAAAAGGTAGGTGATTAGCTCTCTCTCCTCAATGAAAAAAAACGTAACGAGGAAATATAAGATATGCTTTAGCTTTCCTAGTTTGAACTTTGAAGGAGCGAGTTATTGAAGAATATGGCAACAATCATATAGATGAATAGGACTTCTCATACGATGAACGTGCTTTTTCAAAAGTTAAATGACTTCTCTATTTTTAGGTTTGTCATTGCCCTCTGAAAGACTAGTCTACCTCAATCCTTTGTCAATCAACTAGATAGATGAAATCATCTTTTATGCTATTTCTTTGGATCCAAGCTACATGATTTGAAATTTTAGAAAGTTCTTCCTTTGCGGTTTGATCTTATACAACTGTAGTTTCTATGAAATGCTATGATTGCGATTTGTCATTTTCTTCTTCCTTGTTTTTAGTGCTTGAAGTCCAATTTGATTGATAGCTTCTTCTTCTTCTTTTTTCACTAGGGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAGGTCCGTACAGCTCAAGGTCCTCTAAATCGTTCTCTTGTTCTCTGTTCCCTTGCTGAAGCATAACATGATATGTTACTTTGTCATTATGTTTTCAAGTTAACAATGTATTATTATCCCATTGGGTATCCTATTTTTAATTTTAACCTGCTCTTTTTCCCAGTGTTTACAATTGAATGTTTTACTGTATAGGACATTGTGATTATGTGGTCACTTGTATTTGACAATTTTGGTCTTATGTTGGTGAAATTCTCTGTGTTCCTGTAATTTTCAGGCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAGGTATGTATTATGACATTTGGTTTTTCAGTTTACCGTTGTGAGATGGCTGGCTAATATATGTCAGTATCAAGGCTAACATCTGCAGAAGCACAGGTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGTGTAAGTTCTTTCTCAATAGTTTGTCACTTCTATTATTGGCTTATTGCTCTGTTTGTCTATTTCTCTTCTCAAAATGAGAGAAATACTTGCTTATTTTGCAGTTTAAT</genome_strand>
        <mrna_strand>AGAACTAGTCTCG........................................................AGTTTTTTTTTTT-TTTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTAGGGGTGGGGTGGTGGAGGGGGTACATGNGGGTTTGATCTGTGATGATCATTCTTGATTAGGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG...............................................................................................................................................................................................................................................................................GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAG.............................................................................................GTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGT.....................................................................................................TTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253029" ref_strand="+" ref_description="SGN-E253029 [cLEG-25-P14]">
      <seq>ttctacggaagtggaaatttttgcattaaaagatggggacaacgatgagaattgttttcgggctgcttacacttgtcacctgtggaatgattctcggagctttaattcaattagcatttattcgtaggatggaggactcactggacagagaattttcttttggtggaaagcatgcaagtttagctggcagcaattttccgttagcaagaggaatctctaattggcctcatgacaaagatgccatagcactgcgtgtaggatatgtgaagcctgaaataattagttggaaaccaagaattgtattatttcacaacttcttgagtgcagaggaatgtgattatcttagatcgattgccattcctcgccttcatgtttccactgttgtagatgcaaaaactgggaagggagttaagagtgatgtcagaacaagttctggtatgtttctgaaccctgatgagaggaagtatcccatgatacaggcaattgaaaaacgaatttctgtgtattctcaaataccagtagaaaatggggaactcattcaagtgttaaggtatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="77851" stop="69227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77551" g_stop="77456" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77455" i_stop="75809" i_length="1647">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75808" g_stop="75761" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="144" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75760" i_stop="74175" i_length="1586">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74174" g_stop="74109" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="210" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74108" i_stop="73677" i_length="432">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73676" g_stop="73624" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="263" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73623" i_stop="72733" i_length="891">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72732" g_stop="72667" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="329" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72666" i_stop="71661" i_length="1006">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71660" g_stop="71586" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="404" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="71585" i_stop="69951" i_length="1635">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69950" g_stop="69876" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="479" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69875" i_stop="69605" i_length="271">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="69604" g_stop="69526" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="558" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E253029" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77551" e_stop="77456"/>
          <exon e_start="75808" e_stop="75761"/>
          <exon e_start="74174" e_stop="74109"/>
          <exon e_start="73676" e_stop="73624"/>
          <exon e_start="72732" e_stop="72667"/>
          <exon e_start="71660" e_stop="71586"/>
          <exon e_start="69950" e_stop="69876"/>
          <exon e_start="69604" e_stop="69526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCGGTGAAATTTCTTTTATATATGCAATTTATATTTTTGTATGTTTCTGTTGAATGTGTCGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTAGGGGTGGGGTGGTGGAGGGGGTACATGGGGTTTGATCTGTGATGATCATTCTTGATTAGGATGGTATTTTTTTTTTCTTCTGAATTTACATTTTGAAGTGGATTTTTCTGGTTTGTTTTGGGGAGTTTGATACTCTATCATCATTTTTTGATTGGTATTTTAAGGAGAAAAAGAAAAAAAAAAGGAAATGCTGATTGTTTAGTAAAGATAAGATTTTAGTGTGAATTGTTTGTATGGCATGGTGGAACAGTTGATTTATGAGTGTGGTTGAAGTAATGGTATTATAGGGATGTTTTGAATGAACTGACTTCACTTAAGCTGGGAAAATTGGTAGTTGTTCTGTAAAGGATAACAAAAGATAATAACAGATGGCTAGGTTCTTATTTAAAACTATGAATTTGCAAATATTTAATTGGGTTTGAGGGGAAGTTTACTTTTGATTAGCTTCATTGCTTTCTGATTTTGGTTCAGATTATGGTGTAGAAGGAATAAGGCAATTAGTATTATTCCCCCTGTGAAGCTGTAATGTCTTACAGTTAGTTCAAGGGAGTTCTTTTAACTTTAGATCATCCCCCGAAACCATAATTCTCTAGTATAATCACCAGTACTTCTTGTGTTTATGAACGTCCGTTGATTAATATAAGGTTCTTATTAATAAGGGTGAGGTAATGCAAAACTGAATTGGTGCTTTTATGAGATGAATACCATTGATTTCTGAAGCTTACAGTATGATCAAAATTTCATTCTTTTTTGTTCATGGATTAAATGACACAACACAATAAGCTTTGCTATCATTAACTATTAACTTGATTAGAAAATGAGAGTCCTGGACAATAAAACATAAGCACAACAGAGACAATTATAAAAGAAAGCATTTAAGAAACTTGTAGGAGCATGAACCGTCAGATATTGGATGAATCTTTGGTAAAGATACATGCTGGTTTCTTTCATTTCGTTTTTCAGGAGCGTGGACAACCATATAATTCGTTTTTCAACTTAAAATGCTGGAGGAAGTAAAAGTTATCTTTCTGGTCCTTGACCATACCTTTTGTGGTCTTTTCCTTCAAAAAGAAATTTATGAATTTGCTTAAACTTTGGATTTTCTCTGTTTCCCGTTTTCTATTCTGATAATAGAATACATATTTTGACGCCATGGGTTCATACCCTGTTGCTGACGAAAGCCTCTTATTTTAGTGGACAAGGGTAGAAAAGTGAGCCCCCATCGAGTTCCGAACATTTCGCCACTGGCTCTCTGGGATTTCACAGTTTTAGAAAAGGATAGAGAACATATTTCAATTTTTACAGATATGGACTTCTGGTTTTCCTGGTTGGCTTGTTGCTGAATTGAAACTGATGAATATTTGTGGCATGATGTGCAGGAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGGGTAACTTTTCTTGGTTTATAGTACATTATTTTAAATGATATGTTTTTTCTTTTATGTTCTTGGAGGGTCTAATATTTTCTCGGTTTCTCCATTATTCTTCTCACTCATAGTTGCTGTGGTATCTAACAATCAAATCAGTCCTCCATGTTACACTCTGTGCAATACCAAATAATCACTATGAATTATATTACTATTAAGGTACACTATTGGTGGATTTTTTAACTAACTATTTAAACATTTTTGGCAGCTCATCTTAGTGAAAGTAGTAAATGCTCGCTCTAATTAGTCCTTTCTTTTGTAGTTATTGTAGTTTCTACTTTTCAATGAGATTCCAGTGGGTGCAATATCAAGGTTCATTTGAGGGATTCTTAATTCATACTGTAGCTAGTTGAAAGCTTTTGACACGTCATTTTGTGCTTAAGCTTGGTAAAATTAGGGAAGAGTTTTCATAGTAAAAAATTAGGGAAGATTTTATTGAAGTTGAGAGAAAACAAGTATGCTGTTATAGAATGAGGAAAAAGTATTTTGATGATTCACATGAGATCTTTCTCTGCATTTTTCCTTGTAATTATTCCTTAAATATGATCCAAGGTTGTTTTTTAAAGCATTCACAACATGTGTCAGACATTTTCTCCCTTTTCTACTGGTCTTACGCAATCCAATTAGTATTAAAGTGCTGAGGAGATGAGATCCCACAGTTGAATGACCTCGCGTAATGCAACAAGAGATGGTTAGTGTCCTTTCAGCACTCTTGCACATACACGAACTCACCGTAGTCCTTTCTTTCAGATTGTCGGCCATGGGATTCTTTTTCAAGCCACAGCTCCTTCGATTATCGGCTGTGTGGGTTGTGTTTTGTGCCACACACCACGTGAAGAAGGTGACATATATGGCGCCTTGGTATTCCATATTTTCTTCTACTCGTCAGTGTTGCTGCCCCAACTTTTTTCGGTAAAAATCCTTGTAGCCAACCGGCCCCTATCAACCTTCACATTCCCCTTCTCCTCTATGTTTAGATTATAAACTCTGGGAAAGGATTCCTAACTTTCTTTGACTCTGAATTCTGGATTACCTTCCCGAACCTTATGTCCCATTTTTTTTCTTTCCCTGTTAGATCAGTCATTGCTGCGCTTCTCACATATACAATAGCATGCATTAAACAGCATGCGTCTCCCCACACTATGTGCCTTTCAAGATATATGCTCTATTGCCATTTTCAATGATGTAACCAACAAACCTTGTGAACTCATTACTTGCTCCTTGTGATCCCTTTTCCACAAACCTTCTAAATTTGCAAAAGATGCTTTCTGGTATCAAATTGTCCAGATATAATACTTATCAGGAAAACGACCAGTCCATTTTGACCATGGATCTGGAACAGGATTAATTGTTATGTTTATCTTTTAGCGTACTTCATCGAAAACAATTTTTTTTTGAAGTACCAACACTGTAAGATCTTCTAGTCTAAGCACTCCTTATTCTGCTTCACTCCAGATGTTAATTGTAGTCATTACTTGAGATGTTCTTAGTATTCCTTTAGACTGTACTCTAATCTAATGTAAGTTCTTGTAACTGACTTCCTGCAGACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAGGTTTGTGTTGTTCTGTGAATGTTTTTAGGCTTGCATGTGCTCTATGTTGTTAAAGGCTAGACTGAGGTGCACTCAAGCATTGAAGCTTGGTGCAGCATGAGTTGGGCGCTTCTCACTCTTGAGGCATTGCTTCAGTCCAGGCACTAAGAAGCTAGGCATAATTTCCATAAACTCTTTCTTGAAGTGCACGGTACTATATAATAAATGTAGTTGGAAAAACAAATTAATTAAGAGAATATTTTGAATAAGTTTGTTTACATAGCAACTTACCTGATATGTACAAGAAAACTAGTAACTAACCCTGAATTAGAAACTTAAAACGTCATAATTTTATCTGTATATTTAAAATGATTTTGGAACTTGATTTATATTTTGTTTGATACTTTGACATATTCACTTTTCAATTCAATAATCATTTTTCTTTGAGTTCAGGAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATATGTAAGTCCAAGCAAATGGTCTCTGTTGTTTTCTCAACTTCTGTGATTTGTCAGTGAAACTATACAACAGTTTGAAATTGTTGCCATTTGCATGATTGTAGTCGGAAAATACCTAAAAACAAGAAATACATAATTGCGTGATAGAAATGGTATTAGGTTGTATTTTATCTTCGGAATGAGTTCTTAGCAACTAATGTTATCGTTTTTGGGTTGCATTTTCTCAACTTTAAGCCATCTAATGTACGATTTATAGTAAGATGTACTGGTAAATACTGCTGGTAGACATATATTTAGCCATGTTCCCTCTTCCAATGACTTCTCCCCATGCAAGTAGCCAACAAAAATTGTTTACCTTTTTGGCCTTCCTAGTATCCATGCTAGTCAAGTAGGTTGGCACTGGGATGAGGTTTGTGTATGCAAATGTTCAACGAGTCTTTAGATGGTGACATGTTAATCAGGTAAGGTCTTAGGTGAATGAACAGAATGTAATTTTCAGATCTCCGAGAATATCAGTTATGTGTAACGACCAACACATGTTCTCATGAAATTGAGTTTCTTGTTCTGTCTATGTTTTGACCAGCAGAACATACTTGGTTTAGAGTACCAGATTGTGTCCTCTAGAATCACTTCTCAGGAAATGAGAAAGTCATCTTCATTAATATGTATGGTCTTCGTTTTTTGTTTTGAACAATAAATGGAGAATCTCTTTTGACATTCTCAGACTTAGATGAACCAGTCAATTTTTTCCTCAGCTGAGAACTAGAAGAATGTGCCTTAGAGAAAATCCATCCATATTGGACTATGTTTTTCTGTAACTTAAACTGACCAGCTGTATGGATGTCAGTTACTGCTTCATTTTTAATTATGTTAATTTGTCATAATGCTGCTGCAGGTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAGGTAGGCCAGTTCTTTTTCTATTATCTTCCTTCCTATCATTGCATATCTCTATGTTATTTGATAATATATTATTTCTCTTAGTAATACGCTTAACATGTTTTTGGTGAGATAAAATCTTGGTTGATAATATAACTGATTGATAATATATGTGGGAGTGTATTTGCACCTAAGGGTGTGGTTTAGATAATGAAGTGAGTTCAAATCATAGAGATCAGGGTCTAAATTCCAGCAGAGACAAAACCATTAGGTGCTTTTTTATCTGCCTAAGCCTTAGTGGCAAAGTTGCCCGATGGTCTATGCTGGTGGGAGATAGCAAGGTACCTAGTGAAATAGTCGAGGTGGGGCAAGCTGGACTGAACACCACCATCATAAAAAGCTGGAATGTAGAATTTTTAGAGGTTCTTTTATGGTCCTTGCTTCAATTTACCAATAATATATGCATTTTTATTTACCAAATTCCAATAGATAGACTTCAATTGCATCTTGGGTTTCCCCAATATATATCAGATCCAGAAGCATCTGTGAATTCAGAAACTTTGTAATTAGCTTCTCTTTGGATTGAGAACTACTGACAACTTCTATTTGATAATCAAAGTGAGACATATTTAGTTAATTTAGTTTAGCACTATGGAGAACATATTTCATTATGCTTAATTGGTCACTGTTTCTTTTGGCAACATTGTTGTGTCTTTTGTTCACAACCCATGAAAAAGAAAAAAAGAAAAAAAGAAAAAGAAGAAATCAAGTGTGAAAAATCACTTAAGAATGTTAATTATGAATTTCAATTGAACAATCGAGCGTTATGCCTTGGCCATATTCACAGATGGATGGATGGGAGAGGCGGGAAACGAGGTGAAGATGTGGAATAGAATATTAATACATTAATCCTGATCTTTAGATGTGCTATCAAATAGATGGATGATATTACTAGGTCTTTTGCGATTTTTAAAAGTACCATCTATTCATAGTGATAATTTGGGAAATGTATATCATATTGCCTTCACAGGAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAGGTATGCTCACTATGCAAAATCACTCTCTCATATGCAGCATCTATTATGATCCTTTTGGTAGTTTTGATTTCCGTACTTCTATTAAATAAATGTGCTTGGTGAGTTTCCACAATTTCTTAACAGTAAGTTACTTTTGCCTATAAAAGTACTCTGGTGTAATGTTCAAGTTAGAGTTTTTGCTTTGAAGTTTGTCTCTAGAAGAGCACTGACTTTCAAATACCACCTCAATTTGTATTTCTTTTGTGACAGTTCTACCCATTTTCTGTTTTTAGCGTAGAGGAATTTAGTTCAAACGTGTGCTTCACAGTAGGGTATAGGGAACAGATCAGATTTCACATGATAAATGGTTATGCAAGTGCACCTTGAAAGAGGAATTCCTTGAGTTGTTTCTGTTTGTAAGACATAGGCTACTATTAGCAACTCATGCAACATTGTATTTAGGAGAAGACAGCTTGATGGAGTTATTTGACTAAGCTGGATGAGCGTAAGACTTCATCTTCAGGTAAAGGGCAGGCTGAAATGGGGCAATAGTGAAAAAGGGAAGTTCATTGTGAAAGCATGTTTTATACCAACCATTACGGGAACAACATAATATTGAAGAATGGCTCCATGATATGGAAAACAAGTGCCAACTAACGTAGCCTGCTGCAGTCAGATAGAATTACTTAAAGCCTTCTTTACACAGGACAATCTGATTAAGAGAGGAGTCATTATGTGCAACCAATACTAGATGTACAGAAGAAGCTGAATATTACCTCTTTCTTCACTGCCTATGGCAAAGGACATGTGTAATATGTTTTGTGTCTTTTAGGGGTATTTCAGTAATGCACTGCAGTCTCAAAGATGCTTACATTAGTTGGGACAATGGAGAGTTGTAAAAGCCATGAAGGTTATTTGGCAAATGATCCCAGCCTGCACTCCCTGGAGCATGTGGAGGAGAGGAACTACAGATGCTTTGATGGAATCTCAAGTCCTAGTCATTCCTTAAAAGACTGTGGGTGTGTGGTGGACCTTCTGTGCAAATTGTGCACAGTAAATAATTTGATCAGCTTATGAATTTTGTTAGCTCCTTCTGTTTTACGAGTTTCAGAATCAAACTTCACAAGAGCTATGTCTTTTTTTAATACTTATTTGTATCTCGTGAATGCTTGTTAATGAAATCCTATACTTCATCCAGAAAAGGTAGGTGATTAGCTCTCTCTCCTCAATGAAAAAAAACGTAACGAGGAAATATAAGATATGCTTTAGCTTTCCTAGTTTGAACTTTGAAGGAGCGAGTTATTGAAGAATATGGCAACAATCATATAGATGAATAGGACTTCTCATACGATGAACGTGCTTTTTCAAAAGTTAAATGACTTCTCTATTTTTAGGTTTGTCATTGCCCTCTGAAAGACTAGTCTACCTCAATCCTTTGTCAATCAACTAGATAGATGAAATCATCTTTTATGCTATTTCTTTGGATCCAAGCTACATGATTTGAAATTTTAGAAAGTTCTTCCTTTGCGGTTTGATCTTATACAACTGTAGTTTCTATGAAATGCTATGATTGCGATTTGTCATTTTCTTCTTCCTTGTTTTTAGTGCTTGAAGTCCAATTTGATTGATAGCTTCTTCTTCTTCTTTTTTCACTAGGGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAGGTCCGTACAGCTCAAGGTCCTCTAAATCGTTCTCTTGTTCTCTGTTCCCTTGCTGAAGCATAACATGATATGTTACTTTGTCATTATGTTTTCAAGTTAACAATGTATTATTATCCCATTGGGTATCCTATTTTTAATTTTAACCTGCTCTTTTTCCCAGTGTTTACAATTGAATGTTTTACTGTATAGGACATTGTGATTATGTGGTCACTTGTATTTGACAATTTTGGTCTTATGTTGGTGAAATTCTCTGTGTTCCTGTAATTTTCAGGCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAGGTATGTAT</genome_strand>
        <mrna_strand>TTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG...............................................................................................................................................................................................................................................................................GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAGGTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277102" ref_strand="+" ref_description="SGN-E277102 [cLEN-22-L22]">
      <seq>agagccaaatctatggactacaaaagttgacgtacaaacatcaatgcacaatgtacaatatatctgtattgaaaaattgcaaaacgtctctcttggttctaccatttcttcactttacaaatactcccaaaacagtccaatcgacaattttctaaaatcaaaattgaaaaccaaaacaactaatttctctatttttcagttcagatttctacggaagtggaaatttttgcattaaaagatggggacaacgatgagaattgttttcgggctgcttacacttgtcacctgtggaatgattctcggagctttaattcaattagcatttattcgtaggatggaggactcactggacagagaattttcttttggtggaaagcatgcaagtttagctggcagcaattttccgttagcaagaggaatctctaattggcctcatgacaaagatgccatagcactgcgtgtaggatatgtgaagcctgaaataattagttggaaaccaagaattgtattatttcacaacttcttgagtgcagaggaatgtgattatcttagatcgattgccattcctcgccttcatgtttccactgttgtagatgcaaaaactgggaagggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="78057" stop="71283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77757" g_stop="77456" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77455" i_stop="75809" i_length="1647">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75808" g_stop="75761" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="350" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75760" i_stop="74175" i_length="1586">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74174" g_stop="74109" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="416" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74108" i_stop="73677" i_length="432">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73676" g_stop="73624" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="469" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73623" i_stop="72733" i_length="891">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72732" g_stop="72667" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="535" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72666" i_stop="71661" i_length="1006">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="71660" g_stop="71586" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="610" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E277102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77757" e_stop="77456"/>
          <exon e_start="75808" e_stop="75761"/>
          <exon e_start="74174" e_stop="74109"/>
          <exon e_start="73676" e_stop="73624"/>
          <exon e_start="72732" e_stop="72667"/>
          <exon e_start="71660" e_stop="71586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCGGTGAAATTTCTTTTATATATGCAATTTATATTTTTGTATGTTTCTGTTGAATGTGTCGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTAGGGGTGGGGTGGTGGAGGGGGTACATGGGGTTTGATCTGTGATGATCATTCTTGATTAGGATGGTATTTTTTTTTTCTTCTGAATTTACATTTTGAAGTGGATTTTTCTGGTTTGTTTTGGGGAGTTTGATACTCTATCATCATTTTTTGATTGGTATTTTAAGGAGAAAAAGAAAAAAAAAAGGAAATGCTGATTGTTTAGTAAAGATAAGATTTTAGTGTGAATTGTTTGTATGGCATGGTGGAACAGTTGATTTATGAGTGTGGTTGAAGTAATGGTATTATAGGGATGTTTTGAATGAACTGACTTCACTTAAGCTGGGAAAATTGGTAGTTGTTCTGTAAAGGATAACAAAAGATAATAACAGATGGCTAGGTTCTTATTTAAAACTATGAATTTGCAAATATTTAATTGGGTTTGAGGGGAAGTTTACTTTTGATTAGCTTCATTGCTTTCTGATTTTGGTTCAGATTATGGTGTAGAAGGAATAAGGCAATTAGTATTATTCCCCCTGTGAAGCTGTAATGTCTTACAGTTAGTTCAAGGGAGTTCTTTTAACTTTAGATCATCCCCCGAAACCATAATTCTCTAGTATAATCACCAGTACTTCTTGTGTTTATGAACGTCCGTTGATTAATATAAGGTTCTTATTAATAAGGGTGAGGTAATGCAAAACTGAATTGGTGCTTTTATGAGATGAATACCATTGATTTCTGAAGCTTACAGTATGATCAAAATTTCATTCTTTTTTGTTCATGGATTAAATGACACAACACAATAAGCTTTGCTATCATTAACTATTAACTTGATTAGAAAATGAGAGTCCTGGACAATAAAACATAAGCACAACAGAGACAATTATAAAAGAAAGCATTTAAGAAACTTGTAGGAGCATGAACCGTCAGATATTGGATGAATCTTTGGTAAAGATACATGCTGGTTTCTTTCATTTCGTTTTTCAGGAGCGTGGACAACCATATAATTCGTTTTTCAACTTAAAATGCTGGAGGAAGTAAAAGTTATCTTTCTGGTCCTTGACCATACCTTTTGTGGTCTTTTCCTTCAAAAAGAAATTTATGAATTTGCTTAAACTTTGGATTTTCTCTGTTTCCCGTTTTCTATTCTGATAATAGAATACATATTTTGACGCCATGGGTTCATACCCTGTTGCTGACGAAAGCCTCTTATTTTAGTGGACAAGGGTAGAAAAGTGAGCCCCCATCGAGTTCCGAACATTTCGCCACTGGCTCTCTGGGATTTCACAGTTTTAGAAAAGGATAGAGAACATATTTCAATTTTTACAGATATGGACTTCTGGTTTTCCTGGTTGGCTTGTTGCTGAATTGAAACTGATGAATATTTGTGGCATGATGTGCAGGAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGGGTAACTTTTCTTGGTTTATAGTACATTATTTTAAATGATATGTTTTTTCTTTTATGTTCTTGGAGGGTCTAATATTTTCTCGGTTTCTCCATTATTCTTCTCACTCATAGTTGCTGTGGTATCTAACAATCAAATCAGTCCTCCATGTTACACTCTGTGCAATACCAAATAATCACTATGAATTATATTACTATTAAGGTACACTATTGGTGGATTTTTTAACTAACTATTTAAACATTTTTGGCAGCTCATCTTAGTGAAAGTAGTAAATGCTCGCTCTAATTAGTCCTTTCTTTTGTAGTTATTGTAGTTTCTACTTTTCAATGAGATTCCAGTGGGTGCAATATCAAGGTTCATTTGAGGGATTCTTAATTCATACTGTAGCTAGTTGAAAGCTTTTGACACGTCATTTTGTGCTTAAGCTTGGTAAAATTAGGGAAGAGTTTTCATAGTAAAAAATTAGGGAAGATTTTATTGAAGTTGAGAGAAAACAAGTATGCTGTTATAGAATGAGGAAAAAGTATTTTGATGATTCACATGAGATCTTTCTCTGCATTTTTCCTTGTAATTATTCCTTAAATATGATCCAAGGTTGTTTTTTAAAGCATTCACAACATGTGTCAGACATTTTCTCCCTTTTCTACTGGTCTTACGCAATCCAATTAGTATTAAAGTGCTGAGGAGATGAGATCCCACAGTTGAATGACCTCGCGTAATGCAACAAGAGATGGTTAGTGTCCTTTCAGCACTCTTGCACATACACGAACTCACCGTAGTCCTTTCTTTCAGATTGTCGGCCATGGGATTCTTTTTCAAGCCACAGCTCCTTCGATTATCGGCTGTGTGGGTTGTGTTTTGTGCCACACACCACGTGAAGAAGGTGACATATATGGCGCCTTGGTATTCCATATTTTCTTCTACTCGTCAGTGTTGCTGCCCCAACTTTTTTCGGTAAAAATCCTTGTAGCCAACCGGCCCCTATCAACCTTCACATTCCCCTTCTCCTCTATGTTTAGATTATAAACTCTGGGAAAGGATTCCTAACTTTCTTTGACTCTGAATTCTGGATTACCTTCCCGAACCTTATGTCCCATTTTTTTTCTTTCCCTGTTAGATCAGTCATTGCTGCGCTTCTCACATATACAATAGCATGCATTAAACAGCATGCGTCTCCCCACACTATGTGCCTTTCAAGATATATGCTCTATTGCCATTTTCAATGATGTAACCAACAAACCTTGTGAACTCATTACTTGCTCCTTGTGATCCCTTTTCCACAAACCTTCTAAATTTGCAAAAGATGCTTTCTGGTATCAAATTGTCCAGATATAATACTTATCAGGAAAACGACCAGTCCATTTTGACCATGGATCTGGAACAGGATTAATTGTTATGTTTATCTTTTAGCGTACTTCATCGAAAACAATTTTTTTTTGAAGTACCAACACTGTAAGATCTTCTAGTCTAAGCACTCCTTATTCTGCTTCACTCCAGATGTTAATTGTAGTCATTACTTGAGATGTTCTTAGTATTCCTTTAGACTGTACTCTAATCTAATGTAAGTTCTTGTAACTGACTTCCTGCAGACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAGGTTTGTGTTGTTCTGTGAATGTTTTTAGGCTTGCATGTGCTCTATGTTGTTAAAGGCTAGACTGAGGTGCACTCAAGCATTGAAGCTTGGTGCAGCATGAGTTGGGCGCTTCTCACTCTTGAGGCATTGCTTCAGTCCAGGCACTAAGAAGCTAGGCATAATTTCCATAAACTCTTTCTTGAAGTGCACGGTACTATATAATAAATGTAGTTGGAAAAACAAATTAATTAAGAGAATATTTTGAATAAGTTTGTTTACATAGCAACTTACCTGATATGTACAAGAAAACTAGTAACTAACCCTGAATTAGAAACTTAAAACGTCATAATTTTATCTGTATATTTAAAATGATTTTGGAACTTGATTTATATTTTGTTTGATACTTTGACATATTCACTTTTCAATTCAATAATCATTTTTCTTTGAGTTCAGGAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATATGTAAGTCCAAGCAAATGGTCTCTGTTGTTTTCTCAACTTCTGTGATTTGTCAGTGAAACTATACAACAGTTTGAAATTGTTGCCATTTGCATGATTGTAGTCGGAAAATACCTAAAAACAAGAAATACATAATTGCGTGATAGAAATGGTATTAGGTTGTATTTTATCTTCGGAATGAGTTCTTAGCAACTAATGTTATCGTTTTTGGGTTGCATTTTCTCAACTTTAAGCCATCTAATGTACGATTTATAGTAAGATGTACTGGTAAATACTGCTGGTAGACATATATTTAGCCATGTTCCCTCTTCCAATGACTTCTCCCCATGCAAGTAGCCAACAAAAATTGTTTACCTTTTTGGCCTTCCTAGTATCCATGCTAGTCAAGTAGGTTGGCACTGGGATGAGGTTTGTGTATGCAAATGTTCAACGAGTCTTTAGATGGTGACATGTTAATCAGGTAAGGTCTTAGGTGAATGAACAGAATGTAATTTTCAGATCTCCGAGAATATCAGTTATGTGTAACGACCAACACATGTTCTCATGAAATTGAGTTTCTTGTTCTGTCTATGTTTTGACCAGCAGAACATACTTGGTTTAGAGTACCAGATTGTGTCCTCTAGAATCACTTCTCAGGAAATGAGAAAGTCATCTTCATTAATATGTATGGTCTTCGTTTTTTGTTTTGAACAATAAATGGAGAATCTCTTTTGACATTCTCAGACTTAGATGAACCAGTCAATTTTTTCCTCAGCTGAGAACTAGAAGAATGTGCCTTAGAGAAAATCCATCCATATTGGACTATGTTTTTCTGTAACTTAAACTGACCAGCTGTATGGATGTCAGTTACTGCTTCATTTTTAATTATGTTAATTTGTCATAATGCTGCTGCAGGTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAGGTAGGCCAGTTCTTTTTCTATTATCTTCCTTCCTATCATTGCATATCTCTATGTTATTTGATAATATATTATTTCTCTTAGTAATACGCTTAACATGTTTTTGGTGAGATAAAATCTTGGTTGATAATATAACTGATTGATAATATATGTGGGAGTGTATTTGCACCTAAGGGTGTGGTTTAGATAATGAAGTGAGTTCAAATCATAGAGATCAGGGTCTAAATTCCAGCAGAGACAAAACCATTAGGTGCTTTTTTATCTGCCTAAGCCTTAGTGGCAAAGTTGCCCGATGGTCTATGCTGGTGGGAGATAGCAAGGTACCTAGTGAAATAGTCGAGGTGGGGCAAGCTGGACTGAACACCACCATCATAAAAAGCTGGAATGTAGAATTTTTAGAGGTTCTTTTATGGTCCTTGCTTCAATTTACCAATAATATATGCATTTTTATTTACCAAATTCCAATAGATAGACTTCAATTGCATCTTGGGTTTCCCCAATATATATCAGATCCAGAAGCATCTGTGAATTCAGAAACTTTGTAATTAGCTTCTCTTTGGATTGAGAACTACTGACAACTTCTATTTGATAATCAAAGTGAGACATATTTAGTTAATTTAGTTTAGCACTATGGAGAACATATTTCATTATGCTTAATTGGTCACTGTTTCTTTTGGCAACATTGTTGTGTCTTTTGTTCACAACCCATGAAAAAGAAAAAAAGAAAAAAAGAAAAAGAAGAAATCAAGTGTGAAAAATCACTTAAGAATGTTAATTATGAATTTCAATTGAACAATCGAGCGTTATGCCTTGGCCATATTCACAGATGGATGGATGGGAGAGGCGGGAAACGAGGTGAAGATGTGGAATAGAATATTAATACATTAATCCTGATCTTTAGATGTGCTATCAAATAGATGGATGATATTACTAGGTCTTTTGCGATTTTTAAAAGTACCATCTATTCATAGTGATAATTTGGGAAATGTATATCATATTGCCTTCACAGGAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAG</genome_strand>
        <mrna_strand>AGAGCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393849" ref_strand="+" ref_description="SGN-E393849 [TUS-41-D23]">
      <seq>tatatccaaatctatggactacaaaagttgacgtacaaacatcaatgcacaatgtacaatatatctgtattgaaaaattgcaaaacgtctctcttggttctaccatttcttcactttacaaatactcccaaaacagtccaatcgacaattttctaaaatcaaaattgaaaaccaaaacaactaatttctctatttttcagttcagatttctacggaagtggaaatttttgcattaaaagatggggacaacgatgagaattgttttcgggctgcttacacttgtcacctgtggaattattctcggagctttaattcaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="78058" stop="75492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77758" g_stop="77456" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77455" i_stop="75809" i_length="1647">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75808" g_stop="75792" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="320" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E393849" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77758" e_stop="77456"/>
          <exon e_start="75808" e_stop="75792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCGGTGAAATTTCTTTTATATATGCAATTTATATTTTTGTATGTTTCTGTTGAATGTGTCGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTAGGGGTGGGGTGGTGGAGGGGGTACATGGGGTTTGATCTGTGATGATCATTCTTGATTAGGATGGTATTTTTTTTTTCTTCTGAATTTACATTTTGAAGTGGATTTTTCTGGTTTGTTTTGGGGAGTTTGATACTCTATCATCATTTTTTGATTGGTATTTTAAGGAGAAAAAGAAAAAAAAAAGGAAATGCTGATTGTTTAGTAAAGATAAGATTTTAGTGTGAATTGTTTGTATGGCATGGTGGAACAGTTGATTTATGAGTGTGGTTGAAGTAATGGTATTATAGGGATGTTTTGAATGAACTGACTTCACTTAAGCTGGGAAAATTGGTAGTTGTTCTGTAAAGGATAACAAAAGATAATAACAGATGGCTAGGTTCTTATTTAAAACTATGAATTTGCAAATATTTAATTGGGTTTGAGGGGAAGTTTACTTTTGATTAGCTTCATTGCTTTCTGATTTTGGTTCAGATTATGGTGTAGAAGGAATAAGGCAATTAGTATTATTCCCCCTGTGAAGCTGTAATGTCTTACAGTTAGTTCAAGGGAGTTCTTTTAACTTTAGATCATCCCCCGAAACCATAATTCTCTAGTATAATCACCAGTACTTCTTGTGTTTATGAACGTCCGTTGATTAATATAAGGTTCTTATTAATAAGGGTGAGGTAATGCAAAACTGAATTGGTGCTTTTATGAGATGAATACCATTGATTTCTGAAGCTTACAGTATGATCAAAATTTCATTCTTTTTTGTTCATGGATTAAATGACACAACACAATAAGCTTTGCTATCATTAACTATTAACTTGATTAGAAAATGAGAGTCCTGGACAATAAAACATAAGCACAACAGAGACAATTATAAAAGAAAGCATTTAAGAAACTTGTAGGAGCATGAACCGTCAGATATTGGATGAATCTTTGGTAAAGATACATGCTGGTTTCTTTCATTTCGTTTTTCAGGAGCGTGGACAACCATATAATTCGTTTTTCAACTTAAAATGCTGGAGGAAGTAAAAGTTATCTTTCTGGTCCTTGACCATACCTTTTGTGGTCTTTTCCTTCAAAAAGAAATTTATGAATTTGCTTAAACTTTGGATTTTCTCTGTTTCCCGTTTTCTATTCTGATAATAGAATACATATTTTGACGCCATGGGTTCATACCCTGTTGCTGACGAAAGCCTCTTATTTTAGTGGACAAGGGTAGAAAAGTGAGCCCCCATCGAGTTCCGAACATTTCGCCACTGGCTCTCTGGGATTTCACAGTTTTAGAAAAGGATAGAGAACATATTTCAATTTTTACAGATATGGACTTCTGGTTTTCCTGGTTGGCTTGTTGCTGAATTGAAACTGATGAATATTTGTGGCATGATGTGCAGGAGCTTTAATTCAATTA</genome_strand>
        <mrna_strand>TATATCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATTATTCTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTAATTCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717946" ref_strand="+" ref_description="SGN-E717946 [FC03AG10]">
      <seq>gggcgattggcggccaatcggccgaattgagaaaacacaaactagcaaagaaaaaaatataagactgtacagaaaatagagtatatagaaataataggaataggaacaaaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaggcagcgttcaagtgttttgagtgcatttatgtttttcagctgtaatccaaacattatttcttctttcaatgttttcgtttaactttgtagttataaataggaatttctttgtagtaatgagtttgcttctcaacctaagcgtggtgtttacttcactctgttgcctaaaaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="86639" stop="92022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86935" g_stop="87090" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="172" r_length="155" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87091" i_stop="88585" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="259" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="351" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="460" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="496" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="583" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91466" g_stop="91722" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="840" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E717946" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86935" e_stop="87090"/>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCAAATCTTAGAAAACACAAACTAGTAAAGAAAAAAATACAAGACTGTACAGAAAATAGAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGC</genome_strand>
        <mrna_strand>TCGGCCGAAT-TGAGAAAACACAAACTAGCAAAGAAAAAAATATAAGACTGTACAGAAAATAGAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTGCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310769" ref_strand="+" ref_description="SGN-E310769 [cLEZ-15-L9]">
      <seq>aaatacaagactgtacagaaaatatagtatatagaaataataggaataggaacaaaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="86673" stop="91693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86973" g_stop="87090" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87091" i_stop="88585" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="205" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="297" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="406" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="442" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="529" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91466" g_stop="91475" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="539" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E310769" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86973" e_stop="87090"/>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAAGACTGTACAGAAAATAGAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGG</genome_strand>
        <mrna_strand>AAATACAAGACTGTACAGAAAATATAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285727" ref_strand="+" ref_description="SGN-E285727 [cLES-5-C9]">
      <seq>aaaatagagtatatagaaataataggaataggaacaaaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="86691" stop="91620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86991" g_stop="87090" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87091" i_stop="88585" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="187" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="279" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="388" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="424" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91299" g_stop="91320" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="446" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E285727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86991" e_stop="87090"/>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAAC</genome_strand>
        <mrna_strand>AAAATAGAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312658" ref_strand="+" ref_description="SGN-E312658 [cLEZ-20-J4]">
      <seq>gaaataataggaataggaacaaaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagaaatgcaagcctgtatttctgtatgtgcatagaccaagaagaacaatgagttggaggtcctggaaatcataccaccattttgttgagaattctggaccgatacctttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaagcaagttctcttagtaacatcattgcacaggctactaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="86706" stop="91836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87006" g_stop="87090" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87091" i_stop="88585" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="172" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="264" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="377" r_length="113" r_score="0.908"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="0.87"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="413" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="500" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91466" g_stop="91536" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="571" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E312658" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87006" e_stop="87090"/>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAG-AGGACAATGAGTTGGAGGTCCTGGAAATCATA-CACCATTTTGTTGAG-ATTCTGGACCGATA-CTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATG</genome_strand>
        <mrna_strand>GAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................AAATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAAGAACAATGAGTTGGAGGTCCTGGAAATCATACCACCATTTTGTTGAGAATTCTGGACCGATACCTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAAGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292618" ref_strand="+" ref_description="SGN-E292618 [cLET-11-C17]">
      <seq>gaacaaaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggatgtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="86722" stop="90782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87022" g_stop="87090" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87091" i_stop="88585" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="156" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="248" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="357" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90454" g_stop="90482" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="386" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E292618" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87022" e_stop="87090"/>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTT</genome_strand>
        <mrna_strand>GAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGATGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238068" ref_strand="+" ref_description="SGN-E238068 [cLED-22-K11]">
      <seq>aaaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="86726" stop="91693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87026" g_stop="87090" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87091" i_stop="88585" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="152" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="244" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="353" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="389" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="476" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91466" g_stop="91476" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="487" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E238068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87026" e_stop="87090"/>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGT</genome_strand>
        <mrna_strand>AAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201575" ref_strand="+" ref_description="SGN-E201575 [cLEC-11-E7]">
      <seq>aaaaatcccccaactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaggcagcgttcaagtgttttgagtgcatttatgtttttcagctgtaatccaaacattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="86727" stop="91904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87027" g_stop="87090" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87091" i_stop="88585" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="151" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="243" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="352" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="388" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="475" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91466" g_stop="91604" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="614" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E201575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87027" e_stop="87090"/>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTAT</genome_strand>
        <mrna_strand>AAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714676" ref_strand="+" ref_description="SGN-E714676 [FB12AE05]">
      <seq>caactccaaagaagaagaaggaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaggcagcgttcaagtgttttgagtgcatttatgtttttcagctgtaatccaaacattatttcttctttcaatgttttcgtttaactttgtagttataaataggaatttctttgtagtaatgagtttgcttctcaacctaagcgtggtgtttacttcactctgttgcctaaaaactgctggtcatatatatagtacttgttcctctggtggagctagcttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="86737" stop="92068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87037" g_stop="87090" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87091" i_stop="88585" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="141" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="233" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="342" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="378" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="465" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91466" g_stop="91784" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="784" r_length="319" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E714676" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87037" e_stop="87090"/>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTATAACGCATCTCTCAAAACC</genome_strand>
        <mrna_strand>CAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTGCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTATAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295581" ref_strand="+" ref_description="SGN-E295581 [cLET-23-F16]">
      <seq>aagaagaaggaggagttgtttgtaccttggatctccagccatgattcggggtgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="86748" stop="91684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87048" g_stop="87090" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87091" i_stop="88585" i_length="1495">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="130" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="222" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="331" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="367" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91299" g_stop="91384" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="453" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E295581" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87048" e_stop="87090"/>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATGGTATGCTAGATCTCTTCTTTTCAACAAAACCCAAAACCCATTTTCTCTTTTTATCTTTTTTTTTTCAATGTTTTCGTGTTTGATCTGGTGAATGATTGTTACAATTGATGCTTGATTAAAGATATATTTGTAAAAAGTTAAATATGGGTATTGTTTGATTAGTTACATTTGTTCTATACGATTTGGGATTTGAATCTGATTCCGGATCTTGCTATGGAAATGTAAACCAAATGTTTGAATATTATCTAGGTTTTCTTTAAATTGATTGTTTCTAGCTCAAATGAGGAGTTGGAGTTCTATGGATCATATTTAATTTCTCTAAAGGGGTCTCAAAGATTTGGTGTATATTTCCTTTTATAATGGTTGATAGTAGACGAGGGATTGGATTTTTGTGAAATGTAAGAGAAATCTGGATTTGATGAAGGAATTCTTAAGCGTGATAGATTGTGTGTAATTGGATAGAGAAAGTGATGAGCTTTATGGGTATTATTACTTTTTTGGTTGAAGGATTGAGTTTTGAGGCTTTGAAAGTGAAATGATCGAGCTAATACATGTTATTTGTATTTCTGTATGTGGGTATTTGAGAATCAATTGATGTTTGAAACCTGTAGAAGTTTGGTATTAGGGAGAGGGATGTAGTGCTTAGTTGATGAGGGTACCTGAAGGAAAGCTGTGAGTAGTCCATATATAGAATCAAAATGCTTTGGCCTGTAGCAGTCAGAGGAACCGGGGAGAATTTTAGAGTGTGTGGGATACTGTTTTTGTTCTGGAATTTATGTTGGTGTTGACGATGAATAGGATGAGTAGTATAAGAGGAACCAGTTCGTTGTTGCAATAGATTGAGTATGCATAAATTACTTACTTTTTCAACATTTATATTATGCACTCGAATCATTCTATAATCAATGAATTTTGGAAAGAAAAATCAACATCTAAACTCAGAGGTATGTATACAACTTGGTGATTGACTTTGTATCTTAGCATTAGTCCACCAAATTTGTAAAACCTAACCTTCATCTGAATGCAAAATCCAGCCATTTAGTATTGGGAAACTAAGAAGATAAATTGGACATTCAACTAATAAAGAGCATAAGTTAAAAAAACAAAAGATATCCCACTAACCAAGAAAAGGATGCATCTATCACTCTATTACTATAGCACTTCACTGGTCAAACTTCGCCGCGGATAAAACCATGGTATTCAAGTAGAGAAGTGTAGAAAGGCAGGCCCATTGTCCACTGAGTTTCAGATCGTATGTCACAAGTTCTTGGGGATCTTCCTATTGTAAAAAGAATTTTAAAAGACTACAAACAAAGTGGATATTACACGACTTTGAGAAAAACAAAACGATAATGGGACTAATTATTTTTGGCTGATAATCTTTTTTACTTGTTTCAATTGCTCTTTTTAACAGCTTCACTGGATGCATATGCTATGTTTTCTACTACAGTATATATCAACCGCAGTATAGCTAATAGCTTTTGATTTCTTCCAGATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACA</genome_strand>
        <mrna_strand>AAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGGGTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714726" ref_strand="+" ref_description="SGN-E714726 [FB12BA12]">
      <seq>gaggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaggcagcgttcaagtgttttgagtgcatttatgtttttcagctgtaatccaaacattatttcttctttcaatgttttcgtttaactttgtagttataaataggaatttctttgtagtaatgagtttgcttctcaacctaagcgtggtgtttacttcactctgttgcctaaaaactgctggtcatatatatagtacttgttcctctggtggagctagcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="88253" stop="92068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="121" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="213" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="322" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="358" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="445" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91466" g_stop="91777" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="757" r_length="312" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E714726" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTATAACGCATCTCT</genome_strand>
        <mrna_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTGCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327729" ref_strand="+" ref_description="SGN-E327729 [cTOC-20-E20]">
      <seq>ggagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaggcagcgttcaagtgttttgagtgcatttatgtttttcagctgtaatccaaacattatttcttctttcaatgttttcgtttaactttgtagttataaataagaatttctttgtagtaatgagttttcttctcaacctaagcgtgggtgttacttcactctgttgcctaaaactgctggtcatatatatagtacttggtcctctggtggagctagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="88253" stop="92065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="119" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="211" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="320" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="356" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="443" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91466" g_stop="91765" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="742" r_length="299" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E327729" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTA</genome_strand>
        <mrna_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAAGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGGTGTTACTTCACTCTGTTGCCT-AAAACTGCTGGTCATATATATAGTACTTGGTCCTCTGGTGGAGCTAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346796" ref_strand="+" ref_description="SGN-E346796 [cTOF-32-G16]">
      <seq>gagttgtttgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaggcagcgttcaagtgttttgagtgcatttatgtttttcagctgtaatccaaacattatttcttctttcaatgttttcgtttaactttgtagttataaataggaatttctttgtagtaatgagttttcttctcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="88255" stop="91980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="118" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="210" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="319" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="355" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="442" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91466" g_stop="91680" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="657" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="658" polyA_stop="671"/>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E346796" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAA</genome_strand>
        <mrna_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242343" ref_strand="+" ref_description="SGN-E242343 [cLEE-3-E5]">
      <seq>ggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="88274" stop="91845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="102" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="194" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="303" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="339" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="426" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91466" g_stop="91545" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="506" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E242343" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGC</genome_strand>
        <mrna_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304778" ref_strand="+" ref_description="SGN-E304778 [cLEX-10-C3]">
      <seq>tgtaccttggatctccagccatgattcattttgttctgctcattagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtccagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="88266" stop="91693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88586" g_stop="88672" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="110" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="202" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="0.98"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="311" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90372" i_stop="91298" i_length="927">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="398" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91466" g_stop="91478" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="411" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E304778" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88586" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTG</genome_strand>
        <mrna_strand>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCCAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237765" ref_strand="+" ref_description="SGN-E237765 [cLED-19-P22]">
      <seq>ttagccgacagggaaaggtgaggctaaccaagtggtattcaccatattcacaaaaagagagaaccaaggtaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="88305" stop="91693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88605" g_stop="88672" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="160" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="269" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="305" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="392" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91466" g_stop="91481" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="408" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E237765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88605" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGG</genome_strand>
        <mrna_strand>TTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324648" ref_strand="+" ref_description="SGN-E324648 [cTOC-9-O10]">
      <seq>tgaggctaaccaagtggtattcaccatattgacaaagggagagaaccaagggaatccgtgaattaagtggtatgattctcactcgaggaccgaagctttgcaattttgtcgagtggagaggatacaaagtcgtttataaaagatatgcaagcctgtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaagcagcgttcaagtgttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="88323" stop="91867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88623" g_stop="88672" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.802" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90012" g_stop="90103" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="142" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90263" g_stop="90371" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="251" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="287" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="374" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91466" g_stop="91567" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="476" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E324648" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88623" e_stop="88672"/>
          <exon e_start="90012" e_stop="90103"/>
          <exon e_start="90263" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAGGTATTTCTTCTATGCTTCTTGAGATAGGATGCAATGAATATCATATGGTTTTTATTTTTTGAAGTGGTCTTAGGGTGTCTGTTTGATTTATTCAACAGAACTGTTTGTATGTGTTACTCAGTCTAGTGATTTTTATTGAGATCTCAAAGACGATGTATTTATCAATATGATTTAGGGGTAACAATGTGGTGGAGACGCCCACTGCCCACTTCAATATATCTTTCACTAGTTCGGTTTTTTTTCAATATGATAAGTAAATGCCTTTTCCTACTTCCTCAAGAAAATTATTGCAGTAGCTGTTTTACTTGTTATTCCTCAACAATCTTCAGCTACTAAGTGGCAGATATGAGTGGGAAATCTTATTCTCTTTGGGGTTTAAGCTTCCTTATACCCTGGACTATAGGAAAAATTGGGAGCTATATACATGGAAAATACATGGTGTTGCAGTATGACAGACTGGTCTGCGATATGCATAGAAATGCATGGTGTTGCACTATGACAGACTGATTTGCAATATCCATAGAAATGCATAGTATTGCATTAATTTATGAAAGAGACTGGTTTGTTCTTATCAAAAGAGAGAGATAGAGATAGAGAGGGACTTGTTGGATATCAAAATTGAGAATTCATCTTGTCAATCCTCGCGACATTAAAAGAATTTTCTTGCAAACTATGGAAAATTAAAATATAAAAAAAGAGAAATATGAAAAGCCAAAGAAGGCTTATACCTTCAAGTAGTTCCAATATAAGATAGAATCATGTACTAAGAGAGGGTACAAAGAGCACTTTCCAGGGCTTAAGTCAAGTAGCAAAGTCAAGCGGCTTGTGACTTAGGTCACATGATTGAACCATGCGCCATGTGATCTAAGCCTGGTATTTAAATGAAGAAGGGACGAGGGGTGGGCCATTATCTCTGAGTTGTGAAGGTTGCGGTTGCTCCTAAGGGCTGGACTTTAACAGATTTCTCAGTCATGAAAGAAAAAGAGAGGGTTTAAAGAGCCCGAAGAGATGTTCTGAAGATAGGTGTAAAAATATGAAGCTTTCATACCCGAAAGGTAAGATAAAGAAATTACATTAGGTATGGTGTAAAGCTTAATTGCTTTCTTTGTCTTTATTGTTTTCCAGTATTATCTGTGTTATTTTTCTTCGCTGCCAAGGTGAATGGGTTTTGCAATTTTTTCAAGCCATTAAATAGTAGAGGGATGTGAATAATTATTCCACTTTCTTACATACACAGGATTTTTCATTCCTGCAAACATCTTATAGTACTGGTTATGCAAAAAATTATTTTCCTTTAGTTTATAAGTAACATGTTACATGTCAATGCAACTGTCTTAAGGTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAGGTAAAGGTGATCTAATTTTATTCTCAAGCCACGTCTTATGATTTGCTCTCAATTAGATAGAATCTATTTATCTTTTCTTTTTTGAGAAGAATCTATTCATCTTTTTTCCCTGTAAGAAAATATACGTTCCACTTTTCTTATCGGCTGTTAATTTAACAGATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGA</genome_strand>
        <mrna_strand>TGAGGCTAACCAAGTGGTATTCACCATATTGACAAAGGGAGAGAACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG...............................................................................................................................................................ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAAGCAGCGTTCAAGTGTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343798" ref_strand="+" ref_description="SGN-E343798 [cTOF-12-K3]">
      <seq>gtatttctgtatgtgcatagaccaagaggacaatgagttggaggtcctggaaatatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcancgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacantcattgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="89975" stop="91823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90275" g_stop="90371" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="132" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="220" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.465" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91466" g_stop="91519" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="275" r_length="55" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E343798" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90275" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCA-CGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACA-TCATT</genome_strand>
        <mrna_strand>GTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAAT-ATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCANCGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACANTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712834" ref_strand="+" ref_description="SGN-E712834 [FB05DG12]">
      <seq>ctggaaatcatacaccattttgttgagattctggaccgatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaggcagcgttcaagtgttttgagtgcatttatgtttttcagctgtaatccaaacattatttcttctttcaatgttttcgtttaactttgtagttataaataggaatttctttgtagtaatgagtttgcttctcaacctaagcgtggtgtttacttcactctgttgcctaaaaactgctggtcatatatatagtacttgttcctctggtggagctagcttataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="90021" stop="92068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90321" g_stop="90371" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="87" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="174" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91466" g_stop="91769" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="478" r_length="304" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="479" polyA_stop="497"/>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E712834" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90321" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTATAAC</genome_strand>
        <mrna_strand>CTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTGCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293634" ref_strand="+" ref_description="SGN-E293634 [cLET-15-N8]">
      <seq>gatactttggaagtgtatgtgagctagacttaattttcaattttcacaaggcatactatatattggacgaacttgtgattgctggtgaactccaagaatcaagcaagaaaacagttgcacgtctaattgctgcacaggattctttggttgaggctgccaaagaagaggcaagttctcttagtaacatcattgcacaggctactaaatgagagtatgcaggcagcgttcaagtgttttgagtgcatttatgtttttcagctgtaatccaaacattatttcttctttcaatgttttcgtttaactttgtagttataaataggaatttctttgtagtaatgagttttcttctcaacctaagcgtggtgtttacttcactctgttgcctaaaaactgctggtcatatatatagtacttgttcctctggtggagctagcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="90058" stop="92068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90358" g_stop="90371" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90454" g_stop="90489" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="50" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91299" g_stop="91385" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="137" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.465" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91466" g_stop="91774" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="446" r_length="309" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E293634" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90358" e_stop="90371"/>
          <exon e_start="90454" e_stop="90489"/>
          <exon e_start="91299" e_stop="91385"/>
          <exon e_start="91466" e_stop="91774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTTTGGAAGTGTAAGGCTCTCAAACTCTAAAGAAGATGGTATTACAACTTGTTCTGTTTTATATTTATGTTGTTGGCTTTCTTTCCCTTCAGGTATGTGAGCTAGACTTAATTTTCAATTTTCACAAGGTATGTTCATTAAATTTATTCAGGGATTTCTACAATCTATGCCTCCACCTGTCACCTTTGCCTAAATTTACTGTTTTTCCTTGTGGATGTTACAATAATTGGGTGGTGACATTAAGATCACTTCTTGGGGCTTATATAGATTCGTACTAGAGGTTATTTATAGAGGTTAATTTTTTTTGATAAGAAATAGAGGTTAAATTTTTAAGTAACTAGAAACAGACCTATTTTAAAAACATTTTCCATTGAACTTTGAGTAGACTACAATTACAGTTCTATCTTTTTACCCTTGGTCTCTGCAACCCTGCTTGATCTCAGACAGAACTGTTGAAACATCTTTATAATGAAAGTCCAAAGTGAAAATCATTACACCCAAAAGCGTTTAGATGGCTAGATGGGTTGGAGAAAGCAAACAATACCTTGCCAGTACCATCCGTAGTATGATGGTAGAATCGCTGAGTAACCGAGTCCTTAAAGGGGGTGGGCTTAATAGCCCATGGAAAATTCCACATCAAAATAAGGGGAGAAGGAGCCTTATAAGGGTGAGTTCAGGATTCAACTGTTGAGACATCTTCTTTGTTAAAGGACAAGGCTACAAAAAACCATGAGGTGTTGAGTAACTAGTTAAACTAGCTTAATGTTACTACAAAAACCAATGAATGCTATTCTGATTGACTTGTTTTTTGGATAGTATATTCCGTGCTGATTGAACTTGCCTCTAAATGACTAGTTGTGTTTTCATGTATCATGCATTTTCATATAAACAACTTTTGAGATTATAGCTCTTCGAAACCATGTGAATGATTTGGCAGGCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAGGTATTCTTCATTATACAGTTGATGCATTTCACAGATAACAATGCAGTATTCTTCACTGATCTCCTGAGAACAACTTGCAGGATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTATAACGCATC</genome_strand>
        <mrna_strand>GATACTTTGGAAGT..................................................................................GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG................................................................................GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374908" ref_strand="+" ref_description="SGN-E374908 [TUS-15-A23](-)">
      <seq>agctttgtgacacatgtttatttaatggagccaatttgggacaaaagtatggaggaacaggtgatcagtcgtgctcatcggatgggtgctacacgtcctattctcgtggaaacactggcgatgagtggcacaattgaggagcaaatgatgaagttcttacaggaggctgatgaaggtaggaggttgttgaaggaagaatatggtaaactgggtcatgatggagcacgagcaccacgcacattacatgatttcgctgaaagcaattatctcactcgccttaactttgttcggactagttccaaggcatgaaggtggacgattccattgttttgatgaactggcactgcagggtctcgtcaatcgctgactctggcaatctattctgccttgctgagttgtgccaagaggcccaagactatttatgctagatagttgctgcttctttgattattgttgcccaccggtggaatcatttttattcttgcggcattgcagaattcaggcattcggatgtggcaacctgatgatcttcaaagtctggcttagaattggttgtagatatttatacatttattctttttagtcagagaaatttccctagtgtagtatatccttgtcttttcctttttttgcatctctctaaggagaaaatacagttgtagtggctgcttcgaaaataagatatggaccatttttactgaattttgatctggaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="106370" stop="101314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106070" g_stop="106024" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106023" i_stop="105696" i_length="328">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105695" g_stop="105581" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="162" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105580" i_stop="105359" i_length="222">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105358" g_stop="105210" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="311" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105209" i_stop="102018" i_length="3192">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102017" g_stop="101611" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="718" r_length="407" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E374908" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106070" e_stop="106024"/>
          <exon e_start="105695" e_stop="105581"/>
          <exon e_start="105358" e_stop="105210"/>
          <exon e_start="102017" e_stop="101611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTGTGACACATGTTTATTTAATGGAGCCAATTTGGGACAAAAGGTAATAGATATGTTTAGTTTACTGTGTGATTATGCATACCTTATGAATGTAGGCTTTGTGTTTGTTTCCTTGTAATGCCTTGGGAAAAAGCCCATGGTTATGTAGTTGCATAAGTTTAACTTGTCCAAAGACAACCTTCCGGATAATAAACTGGAAAGCTGACCAGCTGACATTTTGGGGAAAAAAATTCCAAGCGGTGAAAAATGCCCAATACTTTCTCCTAGACTTCATTTGACTACTGTTCTCTGAGAATCAAAAAGCTACTTCTGCGGAGTGTCTGCGCAGCTTTCTAACACATTATTGTTTGACTTCTCGTGATACTTATCAGTATGGAGGAACAGGTGATCAGTCGTGCTCATCGGATGGGTGCTACACGTCCTATTCTCGTGGAAACACTGGCGATGAGTGGCACAATTGAGGAGCAAATGATGAAGTTCTTACAGGTATTTCTGTCTCTAATGAATGTTACAGTTATTAGGATTAATCCTCTGACCGGAGATCTGCATTAATTTCATCTCTGCCGAAAAGGATATCATCCTGATTTCTTAGTTCATTTATTGGAAGTTCCATTTTCTTACTTTGATCAACATTTAGGGTGATTATTAAGTGAAATTTTCCCAAATACTTTTCAACTCGAATTTACAGTTTTGGTATAACTATTGCAGGAGGCTGATGAAGGTAGGAGGTTGTTGAAGGAAGAATATGGTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTTAACTTTGTTCGGACTAGTTCCAAGGCATGAAGGTACAGAAATGTAACCATACGAGTAATTCCAAGTTGAAGTAACTTTACTTCTTTTGTTGTTTCATGCATTATGGGTTTTGTTTTTTGCTGCTATTATGTAATTAGCGTTCGTGCTCTGTGAATCTTCTTCCTTTAGAAAATTCTGTAGCTTTTTGGAACTCGCAGCCATGGCTTATAATTTCAGACCAAAGGGAGATGGATATTTATAATCCCATTACCATTCTTTATATTATTACCTCCATGTTCTGCACAGGGTGTAAGTAGCGCATATAGAAGTTGCAATGAGAGTATGTTGCTTGAGATGGTTTGGTCATGGCTTATGTAAGACTCCAAATACATCCCTTGGTACAAACAATGTTTTGGAAAGCGAGAAGCAGAAAAAAACGACGAGGGCTTGCTTCACTGAAGTGAGTCACATGCTTTTTTCAAATGAAGTGCTATTTAGTATAAAACTAGAAAATATTAAATATGCATAGATAATCTAGGAAATCATCTTCTTTTAGAAAATTTTTAGGCTTTTTGGAACTCGCAGACATGACCTATACATTTCAGACCAAAGGGAGATGGATTTTTATGATCCCATTACCATTCTTATATTATTACCTCCATATTCTGCACAGGGTGTAAGTAGCGCATATAGAGTGTCAATGAGAGTATTTTGATTGAGATAGTTTTTTCATGTCTTATGTAAGACCCAAATACATCCCTTGGTACAATCAGGGTTTTGGAAAGCGAGCGGAAAAAAGCAACTAGGGCTTGCTTCACCAAAGCGTGAAGCGAAGCGCATGCTTTTTTCAAATAAAGTGCTATCTAGTACTCCCTCCGTCCCATTTTATGTGGCAACTGACCCGTCACGGAGTTTAAGAAATAAATGAAGACTTTGAAATGTCTACCGAAGTGCCCTTCAAAAAAGTCCAAAGGTAGACTCACTTTTCTCTCTCCTCATAAATGTATTGGAGTACTATCTTTAAAATTAAGAGGGACCAACAAGGTAAAAGAGGAATTGTACATTTAAATATTTACCATAAGAAAAAGTGACATTCTTTTTGGGACTGACCAAAAAGGAAATGGCGCCACATAAAAGGGATGGAGGGAGTATAAAACTAGAAAATATTAAATACTTATAGATAAATAATCAAGAACTCAAGAAAGGTATCATATTTAGCAAATCTTTCAATTCTTAGATTGAAAAGTAAATAATAGATACTAGAAATAGATATTGAATAAGAAAATACAACTTACTACAAGCAAAAACAGCAGAGTGTCTGAGTCACAGGAAGCGAAAAAACAAAGGAAAAAAAATAGAGCAGAACAGAGCAGCAAAACAAAAAAGTAAAAGTAAAGCAGATCATACCCAGTAGCACTACAAACAGAGGAATCTTAAATCAGTAGAAATAAAAAGAGAGTAATGCTACTTAAGTAGCATTACAAACAGCAAACTGAAACGTAAAAAAAAAACTATTTACCTTGTGGAGCAGAGAAACAAAAAGAGAAAAACTGACGCAAGTATTTTTATATTTGAGTCCAGCAGTAGTCGACAAAGGTAAATATTTGGTAAAATTTCCGTAAGTATATTTACAGAAAGTATATGAAAACCTAGTTAGCGCTTATTTCTTAAAAGCCGAGCCTTTTCTCGCTCTAATAAAAAGCACGCTTCTCTCTCTCTTTGGAAAGAAGCTCACGCTTCTTCACCATTGGGTCGCTTCAGGGCATTAGAGCGACAGCCTGTTGCTTCACATTTGTAACAACAGTGGGTACAATGCTGTGCTGATTGAAGACTTAAAATGAGACGAAATAGACTTGAACTCATATGGAGAGAAGTCGTCTAAAGAAGCTTGTAATTTCTCATAATCCATGTAAGATTTAGGTGATGCACATCATTAAAGTAGAGACTCCATATAGGTGATTACTGATAACTAAATAAGAAAAAGGAGAATCCATATAATCAAACGCTAATTGCTTTTGAGAGTTGGAAAATCTCTAGTTTCCTAGAACTGAAATTTGTTTTATAAAAAAATAGTGTCTTTTATTTGTTTTAGTTGGAAAAATTGTTTGAGTGTTGAGATGAAATCGACCTGCTGAGCAGATATAAGATGATATAGATTTTCTCTACTAGTTTGAGCTATACTTGAACAAAATGAGGGTTCACTTGTTTAGGAGATCAACTAGTAGTTAAAAAAATAGCAGACATGGAACAGAAAACCACATATATAAGCAGGTCTCCAATGATTGAAAATACACCAGATTGAATCTACAAAGGTTGTTAAGTAATGCAAGTGCACTATAGGGTCTTAGTACCCCACCCCCACATACATGGGTTGGTGCACTGGGTAGTCCACTTTCACTTGATTGTATGCATCGATATGAAGACAAATTGGCATCCAGTTAGAATGATGTATTTCTTCATAAGTTTGAAATATTTGTAACTTAAAAATCAATTGAGTTTGCTCTTACAAACTATTGACAGGTAAGTTATTTTGGTGCTCTGTTATAATTTAATTCAGGGTTAGTCATCTGGTGTTCTGAGAAGCCTATTCAATTTATAGAAGATACAGGCTTTGGTTAATCCTCATGTAGTCCTGTCTGTTTGTGTGTATATATAGGTACTTTTATATCTTCCTCTTTAAAATTTGGTATCATTACTTTATAGAAAAAGACTATCTTAGAATTTCGTCTCCCTCCCCCCCCCCCCCCCCCCCCAAGAAAAAAGTACCATTCTATACATCACTGAAATTGTGTGTTTCCCTATTTAGAAACGAGTAGTGCATATGAATCATACTGGTGTGAAGGTTTATGAGGAACAAACGAACTGCGAGTTATCTCATTTGAATTTAAGATTTCTCCAAGAAAGTCATGGTTCCCTCATCGAATTATCTTGGCTTGTCACTGTTAAGCACCTTTATTTCTTGACCAGAGGTTGATTTCCTACATCAGTACTTACTATCTGCTTGTGTGGATTTTGCATGATTTTGTGGTGCTTTTGACTTGAGCTAGGAGAAGGGGGAAAGAGAACTCCCAAATGATGTTAACCTCCTTTAATTGACATTTAGAGCAATCAGGTTCATGTAGCACTACCTCGTGAACCTATGACCTCCAAATTCCTATTAGCATCAGAGAAATCTATATACTTTATTTTGAGCTAGTATTCATAGCTTCCAGGTAGTTGGTTGCTGATTTGATTCATGGTTACAGGTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACTCTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGCTAGATAGTTGCTGCTTCTTTGATTATTGTTGCCCACCGGTGGAATCATTTTTATTCTTGCGGCATTGCAGAATTCAGGCATTCGGATGTGGCAACCTGATGATCTTCAAAGTCTGGCTTAGAATTGGTTGTAGATATTTATACATTTATTCTTCTTAGTCAGAGAAATTTCCCTAGTGTAGTATATCCTTGTCTTTTCCTTTTTTTGCATCTCTCTAAGGAGAAAATACAGTTGTAGTGGCTGCTTCGAAAATAAGATATGGACCATTTTTACTGAATTTTGATCTGGAACGA</genome_strand>
        <mrna_strand>AGCTTTGTGACACATGTTTATTTAATGGAGCCAATTTGGGACAAAAG........................................................................................................................................................................................................................................................................................................................................TATGGAGGAACAGGTGATCAGTCGTGCTCATCGGATGGGTGCTACACGTCCTATTCTCGTGGAAACACTGGCGATGAGTGGCACAATTGAGGAGCAAATGATGAAGTTCTTACAG..............................................................................................................................................................................................................................GAGGCTGATGAAGGTAGGAGGTTGTTGAAGGAAGAATATGGTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTTAACTTTGTTCGGACTAGTTCCAAGGCATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACTCTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGCTAGATAGTTGCTGCTTCTTTGATTATTGTTGCCCACCGGTGGAATCATTTTTATTCTTGCGGCATTGCAGAATTCAGGCATTCGGATGTGGCAACCTGATGATCTTCAAAGTCTGGCTTAGAATTGGTTGTAGATATTTATACATTTATTCTTTTTAGTCAGAGAAATTTCCCTAGTGTAGTATATCCTTGTCTTTTCCTTTTTTTGCATCTCTCTAAGGAGAAAATACAGTTGTAGTGGCTGCTTCGAAAATAAGATATGGACCATTTTTACTGAATTTTGATCTGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353771" ref_strand="+" ref_description="SGN-E353771 [cTOS-10-J24]">
      <seq>gtaaactgggtcatgatggagcacgagcaccacgcacattacatgatttcgctgaaagcaattatctcactcgccttaactttgttcggactagttccaaggcatgaaggtggacgattccattgttttgatgaactggcactgcagggtctcgtcaatcgctgactctggcaatctattctgccttgctgagttgtgccaagaggcccaagactatttatgctagatagttgctgcttctttgattattgttgcccaccggtggaatcatttttattcttgcggcattgcagaattcaggcattcggatgtggcaacctgatgatcttcaaagtctggcttagaattggttgtagatatttatacatttattcttcttagtcagagaaatttccctagtgtagtatatccttgtcttttcctttttttgcatctctctaaggagaaaatacagttgtagtggctgcttcgaaaataagatatggaccatttttactgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="105618" stop="101327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105318" g_stop="105210" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105209" i_stop="102018" i_length="3192">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102017" g_stop="101621" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="506" r_length="397" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E353771" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105318" e_stop="105210"/>
          <exon e_start="102017" e_stop="101621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTTAACTTTGTTCGGACTAGTTCCAAGGCATGAAGGTACAGAAATGTAACCATACGAGTAATTCCAAGTTGAAGTAACTTTACTTCTTTTGTTGTTTCATGCATTATGGGTTTTGTTTTTTGCTGCTATTATGTAATTAGCGTTCGTGCTCTGTGAATCTTCTTCCTTTAGAAAATTCTGTAGCTTTTTGGAACTCGCAGCCATGGCTTATAATTTCAGACCAAAGGGAGATGGATATTTATAATCCCATTACCATTCTTTATATTATTACCTCCATGTTCTGCACAGGGTGTAAGTAGCGCATATAGAAGTTGCAATGAGAGTATGTTGCTTGAGATGGTTTGGTCATGGCTTATGTAAGACTCCAAATACATCCCTTGGTACAAACAATGTTTTGGAAAGCGAGAAGCAGAAAAAAACGACGAGGGCTTGCTTCACTGAAGTGAGTCACATGCTTTTTTCAAATGAAGTGCTATTTAGTATAAAACTAGAAAATATTAAATATGCATAGATAATCTAGGAAATCATCTTCTTTTAGAAAATTTTTAGGCTTTTTGGAACTCGCAGACATGACCTATACATTTCAGACCAAAGGGAGATGGATTTTTATGATCCCATTACCATTCTTATATTATTACCTCCATATTCTGCACAGGGTGTAAGTAGCGCATATAGAGTGTCAATGAGAGTATTTTGATTGAGATAGTTTTTTCATGTCTTATGTAAGACCCAAATACATCCCTTGGTACAATCAGGGTTTTGGAAAGCGAGCGGAAAAAAGCAACTAGGGCTTGCTTCACCAAAGCGTGAAGCGAAGCGCATGCTTTTTTCAAATAAAGTGCTATCTAGTACTCCCTCCGTCCCATTTTATGTGGCAACTGACCCGTCACGGAGTTTAAGAAATAAATGAAGACTTTGAAATGTCTACCGAAGTGCCCTTCAAAAAAGTCCAAAGGTAGACTCACTTTTCTCTCTCCTCATAAATGTATTGGAGTACTATCTTTAAAATTAAGAGGGACCAACAAGGTAAAAGAGGAATTGTACATTTAAATATTTACCATAAGAAAAAGTGACATTCTTTTTGGGACTGACCAAAAAGGAAATGGCGCCACATAAAAGGGATGGAGGGAGTATAAAACTAGAAAATATTAAATACTTATAGATAAATAATCAAGAACTCAAGAAAGGTATCATATTTAGCAAATCTTTCAATTCTTAGATTGAAAAGTAAATAATAGATACTAGAAATAGATATTGAATAAGAAAATACAACTTACTACAAGCAAAAACAGCAGAGTGTCTGAGTCACAGGAAGCGAAAAAACAAAGGAAAAAAAATAGAGCAGAACAGAGCAGCAAAACAAAAAAGTAAAAGTAAAGCAGATCATACCCAGTAGCACTACAAACAGAGGAATCTTAAATCAGTAGAAATAAAAAGAGAGTAATGCTACTTAAGTAGCATTACAAACAGCAAACTGAAACGTAAAAAAAAAACTATTTACCTTGTGGAGCAGAGAAACAAAAAGAGAAAAACTGACGCAAGTATTTTTATATTTGAGTCCAGCAGTAGTCGACAAAGGTAAATATTTGGTAAAATTTCCGTAAGTATATTTACAGAAAGTATATGAAAACCTAGTTAGCGCTTATTTCTTAAAAGCCGAGCCTTTTCTCGCTCTAATAAAAAGCACGCTTCTCTCTCTCTTTGGAAAGAAGCTCACGCTTCTTCACCATTGGGTCGCTTCAGGGCATTAGAGCGACAGCCTGTTGCTTCACATTTGTAACAACAGTGGGTACAATGCTGTGCTGATTGAAGACTTAAAATGAGACGAAATAGACTTGAACTCATATGGAGAGAAGTCGTCTAAAGAAGCTTGTAATTTCTCATAATCCATGTAAGATTTAGGTGATGCACATCATTAAAGTAGAGACTCCATATAGGTGATTACTGATAACTAAATAAGAAAAAGGAGAATCCATATAATCAAACGCTAATTGCTTTTGAGAGTTGGAAAATCTCTAGTTTCCTAGAACTGAAATTTGTTTTATAAAAAAATAGTGTCTTTTATTTGTTTTAGTTGGAAAAATTGTTTGAGTGTTGAGATGAAATCGACCTGCTGAGCAGATATAAGATGATATAGATTTTCTCTACTAGTTTGAGCTATACTTGAACAAAATGAGGGTTCACTTGTTTAGGAGATCAACTAGTAGTTAAAAAAATAGCAGACATGGAACAGAAAACCACATATATAAGCAGGTCTCCAATGATTGAAAATACACCAGATTGAATCTACAAAGGTTGTTAAGTAATGCAAGTGCACTATAGGGTCTTAGTACCCCACCCCCACATACATGGGTTGGTGCACTGGGTAGTCCACTTTCACTTGATTGTATGCATCGATATGAAGACAAATTGGCATCCAGTTAGAATGATGTATTTCTTCATAAGTTTGAAATATTTGTAACTTAAAAATCAATTGAGTTTGCTCTTACAAACTATTGACAGGTAAGTTATTTTGGTGCTCTGTTATAATTTAATTCAGGGTTAGTCATCTGGTGTTCTGAGAAGCCTATTCAATTTATAGAAGATACAGGCTTTGGTTAATCCTCATGTAGTCCTGTCTGTTTGTGTGTATATATAGGTACTTTTATATCTTCCTCTTTAAAATTTGGTATCATTACTTTATAGAAAAAGACTATCTTAGAATTTCGTCTCCCTCCCCCCCCCCCCCCCCCCCCAAGAAAAAAGTACCATTCTATACATCACTGAAATTGTGTGTTTCCCTATTTAGAAACGAGTAGTGCATATGAATCATACTGGTGTGAAGGTTTATGAGGAACAAACGAACTGCGAGTTATCTCATTTGAATTTAAGATTTCTCCAAGAAAGTCATGGTTCCCTCATCGAATTATCTTGGCTTGTCACTGTTAAGCACCTTTATTTCTTGACCAGAGGTTGATTTCCTACATCAGTACTTACTATCTGCTTGTGTGGATTTTGCATGATTTTGTGGTGCTTTTGACTTGAGCTAGGAGAAGGGGGAAAGAGAACTCCCAAATGATGTTAACCTCCTTTAATTGACATTTAGAGCAATCAGGTTCATGTAGCACTACCTCGTGAACCTATGACCTCCAAATTCCTATTAGCATCAGAGAAATCTATATACTTTATTTTGAGCTAGTATTCATAGCTTCCAGGTAGTTGGTTGCTGATTTGATTCATGGTTACAGGTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACTCTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGCTAGATAGTTGCTGCTTCTTTGATTATTGTTGCCCACCGGTGGAATCATTTTTATTCTTGCGGCATTGCAGAATTCAGGCATTCGGATGTGGCAACCTGATGATCTTCAAAGTCTGGCTTAGAATTGGTTGTAGATATTTATACATTTATTCTTCTTAGTCAGAGAAATTTCCCTAGTGTAGTATATCCTTGTCTTTTCCTTTTTTTGCATCTCTCTAAGGAGAAAATACAGTTGTAGTGGCTGCTTCGAAAATAAGATATGGACCATTTTTACTGAATTTTGA</genome_strand>
        <mrna_strand>GTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTTAACTTTGTTCGGACTAGTTCCAAGGCATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACTCTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGCTAGATAGTTGCTGCTTCTTTGATTATTGTTGCCCACCGGTGGAATCATTTTTATTCTTGCGGCATTGCAGAATTCAGGCATTCGGATGTGGCAACCTGATGATCTTCAAAGTCTGGCTTAGAATTGGTTGTAGATATTTATACATTTATTCTTCTTAGTCAGAGAAATTTCCCTAGTGTAGTATATCCTTGTCTTTTCCTTTTTTTGCATCTCTCTAAGGAGAAAATACAGTTGTAGTGGCTGCTTCGAAAATAAGATATGGACCATTTTTACTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735535" ref_strand="+" ref_description="SGN-E735535 [LC02AB08]">
      <seq>ggttgggccagcaaatgatttctgcaatataaatccacagaaagttatcatattttctcagtttctggagcacatacatgtaattgaacagcagttagcaattgctggtatcagttttgccagtttgtatagtccaatgccttccattagcaaggtgaaagcactgttaacatttcagcatgatgttgactgcatggctcttttaatggacggaagtgcagctttaggtcttgatctgagctttgtgacacatgtttatttaatggagccaatttgggacaaaagtatggaggaacaggtgatcagtcgtgctcatcggatgggtgctacacgtcctattctcgtggaaacactggcgatgagtggcacaattgaggagcaaatgatgaagttcttacaggaggctgatgaaggtaggaggttgttgaaggaagaatatggtaaactgggtcatgatggagcacgagcaccacgcacattacatgatttcgctgaaagcaattatctcactcgccttaactttgttcggactagttccaaggcatgaaggtggacgattccattgttttgatgaactggcactgcagggtctcgtcaatcgctgactctggcaatctattctgccttgctgagttgtgccaagaggcccaagactatttatgctagtttgattattgttgcccaccggtggaatcatttttattcttgcggcattgcagaattcaggcattcggatgtggcaacctgatgatcttcaaagtctggcttagaattggttgtagatatttatacatttattcttcttagtcagagaaatttccctagtgtagtatatccttgtcttttcctttttttgcatctctctaaagagaaaatacagttgtagtggctgcttcgaaaataagaaatggaccatttttactgaaaaaaacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="106799" stop="101327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106499" g_stop="106406" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106405" i_stop="106323" i_length="83">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106322" g_stop="106263" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="154" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106262" i_stop="106155" i_length="108">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106154" g_stop="106024" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="285" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106023" i_stop="105696" i_length="328">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105695" g_stop="105581" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="400" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105580" i_stop="105359" i_length="222">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105358" g_stop="105210" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="549" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105209" i_stop="102018" i_length="3192">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102017" g_stop="101628" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="925" r_length="376" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="926" polyA_stop="940"/>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E735535" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>939</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106499" e_stop="106406"/>
          <exon e_start="106322" e_stop="106263"/>
          <exon e_start="106154" e_stop="106024"/>
          <exon e_start="105695" e_stop="105581"/>
          <exon e_start="105358" e_stop="105210"/>
          <exon e_start="102017" e_stop="101628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGGCCAGCAAATGATTTCTGCAATATAAATCCACAGAAAGTTATCATATTTTCTCAGTTTCTGGAGCACATACATGTAATTGAACAGCAGGTAATGGTACTTCATTGTGAGCATTTCTGTTCAATATTTTAATTATCATTTGATGGTTTGATCACTCCATGTTCTCCTGGCAGTTAGCAATTGCTGGTATCAGTTTTGCCAGTTTGTATAGTCCAATGCCTTCCATTAGCAAGGTATGACTGTTTAACCATTCTGATTTTTATGATTATCTTTCTAACAAACTTTGTTGGATGGTTGCTGTGGTATTTTCGGAATTATTAAGTTATACTTGCATGATTCAGGTGAAAGCACTGTTAACATTTCAGCATGATGTTGACTGCATGGCTCTTTTAATGGACGGAAGTGCAGCTTTAGGTCTTGATCTGAGCTTTGTGACACATGTTTATTTAATGGAGCCAATTTGGGACAAAAGGTAATAGATATGTTTAGTTTACTGTGTGATTATGCATACCTTATGAATGTAGGCTTTGTGTTTGTTTCCTTGTAATGCCTTGGGAAAAAGCCCATGGTTATGTAGTTGCATAAGTTTAACTTGTCCAAAGACAACCTTCCGGATAATAAACTGGAAAGCTGACCAGCTGACATTTTGGGGAAAAAAATTCCAAGCGGTGAAAAATGCCCAATACTTTCTCCTAGACTTCATTTGACTACTGTTCTCTGAGAATCAAAAAGCTACTTCTGCGGAGTGTCTGCGCAGCTTTCTAACACATTATTGTTTGACTTCTCGTGATACTTATCAGTATGGAGGAACAGGTGATCAGTCGTGCTCATCGGATGGGTGCTACACGTCCTATTCTCGTGGAAACACTGGCGATGAGTGGCACAATTGAGGAGCAAATGATGAAGTTCTTACAGGTATTTCTGTCTCTAATGAATGTTACAGTTATTAGGATTAATCCTCTGACCGGAGATCTGCATTAATTTCATCTCTGCCGAAAAGGATATCATCCTGATTTCTTAGTTCATTTATTGGAAGTTCCATTTTCTTACTTTGATCAACATTTAGGGTGATTATTAAGTGAAATTTTCCCAAATACTTTTCAACTCGAATTTACAGTTTTGGTATAACTATTGCAGGAGGCTGATGAAGGTAGGAGGTTGTTGAAGGAAGAATATGGTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTTAACTTTGTTCGGACTAGTTCCAAGGCATGAAGGTACAGAAATGTAACCATACGAGTAATTCCAAGTTGAAGTAACTTTACTTCTTTTGTTGTTTCATGCATTATGGGTTTTGTTTTTTGCTGCTATTATGTAATTAGCGTTCGTGCTCTGTGAATCTTCTTCCTTTAGAAAATTCTGTAGCTTTTTGGAACTCGCAGCCATGGCTTATAATTTCAGACCAAAGGGAGATGGATATTTATAATCCCATTACCATTCTTTATATTATTACCTCCATGTTCTGCACAGGGTGTAAGTAGCGCATATAGAAGTTGCAATGAGAGTATGTTGCTTGAGATGGTTTGGTCATGGCTTATGTAAGACTCCAAATACATCCCTTGGTACAAACAATGTTTTGGAAAGCGAGAAGCAGAAAAAAACGACGAGGGCTTGCTTCACTGAAGTGAGTCACATGCTTTTTTCAAATGAAGTGCTATTTAGTATAAAACTAGAAAATATTAAATATGCATAGATAATCTAGGAAATCATCTTCTTTTAGAAAATTTTTAGGCTTTTTGGAACTCGCAGACATGACCTATACATTTCAGACCAAAGGGAGATGGATTTTTATGATCCCATTACCATTCTTATATTATTACCTCCATATTCTGCACAGGGTGTAAGTAGCGCATATAGAGTGTCAATGAGAGTATTTTGATTGAGATAGTTTTTTCATGTCTTATGTAAGACCCAAATACATCCCTTGGTACAATCAGGGTTTTGGAAAGCGAGCGGAAAAAAGCAACTAGGGCTTGCTTCACCAAAGCGTGAAGCGAAGCGCATGCTTTTTTCAAATAAAGTGCTATCTAGTACTCCCTCCGTCCCATTTTATGTGGCAACTGACCCGTCACGGAGTTTAAGAAATAAATGAAGACTTTGAAATGTCTACCGAAGTGCCCTTCAAAAAAGTCCAAAGGTAGACTCACTTTTCTCTCTCCTCATAAATGTATTGGAGTACTATCTTTAAAATTAAGAGGGACCAACAAGGTAAAAGAGGAATTGTACATTTAAATATTTACCATAAGAAAAAGTGACATTCTTTTTGGGACTGACCAAAAAGGAAATGGCGCCACATAAAAGGGATGGAGGGAGTATAAAACTAGAAAATATTAAATACTTATAGATAAATAATCAAGAACTCAAGAAAGGTATCATATTTAGCAAATCTTTCAATTCTTAGATTGAAAAGTAAATAATAGATACTAGAAATAGATATTGAATAAGAAAATACAACTTACTACAAGCAAAAACAGCAGAGTGTCTGAGTCACAGGAAGCGAAAAAACAAAGGAAAAAAAATAGAGCAGAACAGAGCAGCAAAACAAAAAAGTAAAAGTAAAGCAGATCATACCCAGTAGCACTACAAACAGAGGAATCTTAAATCAGTAGAAATAAAAAGAGAGTAATGCTACTTAAGTAGCATTACAAACAGCAAACTGAAACGTAAAAAAAAAACTATTTACCTTGTGGAGCAGAGAAACAAAAAGAGAAAAACTGACGCAAGTATTTTTATATTTGAGTCCAGCAGTAGTCGACAAAGGTAAATATTTGGTAAAATTTCCGTAAGTATATTTACAGAAAGTATATGAAAACCTAGTTAGCGCTTATTTCTTAAAAGCCGAGCCTTTTCTCGCTCTAATAAAAAGCACGCTTCTCTCTCTCTTTGGAAAGAAGCTCACGCTTCTTCACCATTGGGTCGCTTCAGGGCATTAGAGCGACAGCCTGTTGCTTCACATTTGTAACAACAGTGGGTACAATGCTGTGCTGATTGAAGACTTAAAATGAGACGAAATAGACTTGAACTCATATGGAGAGAAGTCGTCTAAAGAAGCTTGTAATTTCTCATAATCCATGTAAGATTTAGGTGATGCACATCATTAAAGTAGAGACTCCATATAGGTGATTACTGATAACTAAATAAGAAAAAGGAGAATCCATATAATCAAACGCTAATTGCTTTTGAGAGTTGGAAAATCTCTAGTTTCCTAGAACTGAAATTTGTTTTATAAAAAAATAGTGTCTTTTATTTGTTTTAGTTGGAAAAATTGTTTGAGTGTTGAGATGAAATCGACCTGCTGAGCAGATATAAGATGATATAGATTTTCTCTACTAGTTTGAGCTATACTTGAACAAAATGAGGGTTCACTTGTTTAGGAGATCAACTAGTAGTTAAAAAAATAGCAGACATGGAACAGAAAACCACATATATAAGCAGGTCTCCAATGATTGAAAATACACCAGATTGAATCTACAAAGGTTGTTAAGTAATGCAAGTGCACTATAGGGTCTTAGTACCCCACCCCCACATACATGGGTTGGTGCACTGGGTAGTCCACTTTCACTTGATTGTATGCATCGATATGAAGACAAATTGGCATCCAGTTAGAATGATGTATTTCTTCATAAGTTTGAAATATTTGTAACTTAAAAATCAATTGAGTTTGCTCTTACAAACTATTGACAGGTAAGTTATTTTGGTGCTCTGTTATAATTTAATTCAGGGTTAGTCATCTGGTGTTCTGAGAAGCCTATTCAATTTATAGAAGATACAGGCTTTGGTTAATCCTCATGTAGTCCTGTCTGTTTGTGTGTATATATAGGTACTTTTATATCTTCCTCTTTAAAATTTGGTATCATTACTTTATAGAAAAAGACTATCTTAGAATTTCGTCTCCCTCCCCCCCCCCCCCCCCCCCCAAGAAAAAAGTACCATTCTATACATCACTGAAATTGTGTGTTTCCCTATTTAGAAACGAGTAGTGCATATGAATCATACTGGTGTGAAGGTTTATGAGGAACAAACGAACTGCGAGTTATCTCATTTGAATTTAAGATTTCTCCAAGAAAGTCATGGTTCCCTCATCGAATTATCTTGGCTTGTCACTGTTAAGCACCTTTATTTCTTGACCAGAGGTTGATTTCCTACATCAGTACTTACTATCTGCTTGTGTGGATTTTGCATGATTTTGTGGTGCTTTTGACTTGAGCTAGGAGAAGGGGGAAAGAGAACTCCCAAATGATGTTAACCTCCTTTAATTGACATTTAGAGCAATCAGGTTCATGTAGCACTACCTCGTGAACCTATGACCTCCAAATTCCTATTAGCATCAGAGAAATCTATATACTTTATTTTGAGCTAGTATTCATAGCTTCCAGGTAGTTGGTTGCTGATTTGATTCATGGTTACAGGTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACTCTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGCTAGATAGTTGCTGCTTCTTTGATTATTGTTGCCCACCGGTGGAATCATTTTTATTCTTGCGGCATTGCAGAATTCAGGCATTCGGATGTGGCAACCTGATGATCTTCAAAGTCTGGCTTAGAATTGGTTGTAGATATTTATACATTTATTCTTCTTAGTCAGAGAAATTTCCCTAGTGTAGTATATCCTTGTCTTTTCCTTTTTTTGCATCTCTCTAAGGAGAAAATACAGTTGTAGTGGCTGCTTCGAAAATAAGATATGGACCATTTTTACTGA</genome_strand>
        <mrna_strand>GGTTGGGCCAGCAAATGATTTCTGCAATATAAATCCACAGAAAGTTATCATATTTTCTCAGTTTCTGGAGCACATACATGTAATTGAACAGCAG...................................................................................TTAGCAATTGCTGGTATCAGTTTTGCCAGTTTGTATAGTCCAATGCCTTCCATTAGCAAG............................................................................................................GTGAAAGCACTGTTAACATTTCAGCATGATGTTGACTGCATGGCTCTTTTAATGGACGGAAGTGCAGCTTTAGGTCTTGATCTGAGCTTTGTGACACATGTTTATTTAATGGAGCCAATTTGGGACAAAAG........................................................................................................................................................................................................................................................................................................................................TATGGAGGAACAGGTGATCAGTCGTGCTCATCGGATGGGTGCTACACGTCCTATTCTCGTGGAAACACTGGCGATGAGTGGCACAATTGAGGAGCAAATGATGAAGTTCTTACAG..............................................................................................................................................................................................................................GAGGCTGATGAAGGTAGGAGGTTGTTGAAGGAAGAATATGGTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTTAACTTTGTTCGGACTAGTTCCAAGGCATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACTCTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGC----TA------G----TTTGATTATTGTTGCCCACCGGTGGAATCATTTTTATTCTTGCGGCATTGCAGAATTCAGGCATTCGGATGTGGCAACCTGATGATCTTCAAAGTCTGGCTTAGAATTGGTTGTAGATATTTATACATTTATTCTTCTTAGTCAGAGAAATTTCCCTAGTGTAGTATATCCTTGTCTTTTCCTTTTTTTGCATCTCTCTAAAGAGAAAATACAGTTGTAGTGGCTGCTTCGAAAATAAGAAATGGACCATTTTTACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378945" ref_strand="+" ref_description="SGN-E378945 [TUS-1-L3](-)">
      <seq>gcatgatgttgactgcatggctcttttaatggacggaagtgcagctttaggtcttgatctgagctttgtgacacatgtttatttaatggagccaatttgggacaaaagtatggaggaacaggtgatcagtcgtgctcatcggatgggtgctacacgtcctattctcgtggaaacactggcgatgagtggcacaattgaggagcaaatgatgaagttcttacaggaggctgatgaaggtaggaggttgttgaaggaagaatatggtaaactgggtcatgatggagcacgagcaccacgcacattacatgatttcgctgaaagcaattatctcactcgccttaactttgttcggactagttccaaggcatgaaggtggacgattccattgttttgatgaactggcactgcagggtctcgtcaatcgctgactctggcaatctattctgccttgctgagttgtgccaagaggcccaagactatttatgctagatagttgctgcttctttgattattgttgcccaccggtggaatcatttttattcttgcggcattgcagaattcaggcattcggatgtggcaacctgatgatcttcaaagtctggcttagaattggttgtagatatttatacatttattcttcttagtcagagaaatttccctagtgtagtatatccttgtcttttcctttttttgcatctctgtaaggagaaaatacagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="106431" stop="101371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106131" g_stop="106024" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106023" i_stop="105696" i_length="328">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105695" g_stop="105581" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="223" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105580" i_stop="105359" i_length="222">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105358" g_stop="105210" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="372" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105209" i_stop="102018" i_length="3192">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="102017" g_stop="101671" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="719" r_length="347" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E378945" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106131" e_stop="106024"/>
          <exon e_start="105695" e_stop="105581"/>
          <exon e_start="105358" e_stop="105210"/>
          <exon e_start="102017" e_stop="101671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGATGTTGACTGCATGGCTCTTTTAATGGACGGAAGTGCAGCTTTAGGTCTTGATCTGAGCTTTGTGACACATGTTTATTTAATGGAGCCAATTTGGGACAAAAGGTAATAGATATGTTTAGTTTACTGTGTGATTATGCATACCTTATGAATGTAGGCTTTGTGTTTGTTTCCTTGTAATGCCTTGGGAAAAAGCCCATGGTTATGTAGTTGCATAAGTTTAACTTGTCCAAAGACAACCTTCCGGATAATAAACTGGAAAGCTGACCAGCTGACATTTTGGGGAAAAAAATTCCAAGCGGTGAAAAATGCCCAATACTTTCTCCTAGACTTCATTTGACTACTGTTCTCTGAGAATCAAAAAGCTACTTCTGCGGAGTGTCTGCGCAGCTTTCTAACACATTATTGTTTGACTTCTCGTGATACTTATCAGTATGGAGGAACAGGTGATCAGTCGTGCTCATCGGATGGGTGCTACACGTCCTATTCTCGTGGAAACACTGGCGATGAGTGGCACAATTGAGGAGCAAATGATGAAGTTCTTACAGGTATTTCTGTCTCTAATGAATGTTACAGTTATTAGGATTAATCCTCTGACCGGAGATCTGCATTAATTTCATCTCTGCCGAAAAGGATATCATCCTGATTTCTTAGTTCATTTATTGGAAGTTCCATTTTCTTACTTTGATCAACATTTAGGGTGATTATTAAGTGAAATTTTCCCAAATACTTTTCAACTCGAATTTACAGTTTTGGTATAACTATTGCAGGAGGCTGATGAAGGTAGGAGGTTGTTGAAGGAAGAATATGGTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTTAACTTTGTTCGGACTAGTTCCAAGGCATGAAGGTACAGAAATGTAACCATACGAGTAATTCCAAGTTGAAGTAACTTTACTTCTTTTGTTGTTTCATGCATTATGGGTTTTGTTTTTTGCTGCTATTATGTAATTAGCGTTCGTGCTCTGTGAATCTTCTTCCTTTAGAAAATTCTGTAGCTTTTTGGAACTCGCAGCCATGGCTTATAATTTCAGACCAAAGGGAGATGGATATTTATAATCCCATTACCATTCTTTATATTATTACCTCCATGTTCTGCACAGGGTGTAAGTAGCGCATATAGAAGTTGCAATGAGAGTATGTTGCTTGAGATGGTTTGGTCATGGCTTATGTAAGACTCCAAATACATCCCTTGGTACAAACAATGTTTTGGAAAGCGAGAAGCAGAAAAAAACGACGAGGGCTTGCTTCACTGAAGTGAGTCACATGCTTTTTTCAAATGAAGTGCTATTTAGTATAAAACTAGAAAATATTAAATATGCATAGATAATCTAGGAAATCATCTTCTTTTAGAAAATTTTTAGGCTTTTTGGAACTCGCAGACATGACCTATACATTTCAGACCAAAGGGAGATGGATTTTTATGATCCCATTACCATTCTTATATTATTACCTCCATATTCTGCACAGGGTGTAAGTAGCGCATATAGAGTGTCAATGAGAGTATTTTGATTGAGATAGTTTTTTCATGTCTTATGTAAGACCCAAATACATCCCTTGGTACAATCAGGGTTTTGGAAAGCGAGCGGAAAAAAGCAACTAGGGCTTGCTTCACCAAAGCGTGAAGCGAAGCGCATGCTTTTTTCAAATAAAGTGCTATCTAGTACTCCCTCCGTCCCATTTTATGTGGCAACTGACCCGTCACGGAGTTTAAGAAATAAATGAAGACTTTGAAATGTCTACCGAAGTGCCCTTCAAAAAAGTCCAAAGGTAGACTCACTTTTCTCTCTCCTCATAAATGTATTGGAGTACTATCTTTAAAATTAAGAGGGACCAACAAGGTAAAAGAGGAATTGTACATTTAAATATTTACCATAAGAAAAAGTGACATTCTTTTTGGGACTGACCAAAAAGGAAATGGCGCCACATAAAAGGGATGGAGGGAGTATAAAACTAGAAAATATTAAATACTTATAGATAAATAATCAAGAACTCAAGAAAGGTATCATATTTAGCAAATCTTTCAATTCTTAGATTGAAAAGTAAATAATAGATACTAGAAATAGATATTGAATAAGAAAATACAACTTACTACAAGCAAAAACAGCAGAGTGTCTGAGTCACAGGAAGCGAAAAAACAAAGGAAAAAAAATAGAGCAGAACAGAGCAGCAAAACAAAAAAGTAAAAGTAAAGCAGATCATACCCAGTAGCACTACAAACAGAGGAATCTTAAATCAGTAGAAATAAAAAGAGAGTAATGCTACTTAAGTAGCATTACAAACAGCAAACTGAAACGTAAAAAAAAAACTATTTACCTTGTGGAGCAGAGAAACAAAAAGAGAAAAACTGACGCAAGTATTTTTATATTTGAGTCCAGCAGTAGTCGACAAAGGTAAATATTTGGTAAAATTTCCGTAAGTATATTTACAGAAAGTATATGAAAACCTAGTTAGCGCTTATTTCTTAAAAGCCGAGCCTTTTCTCGCTCTAATAAAAAGCACGCTTCTCTCTCTCTTTGGAAAGAAGCTCACGCTTCTTCACCATTGGGTCGCTTCAGGGCATTAGAGCGACAGCCTGTTGCTTCACATTTGTAACAACAGTGGGTACAATGCTGTGCTGATTGAAGACTTAAAATGAGACGAAATAGACTTGAACTCATATGGAGAGAAGTCGTCTAAAGAAGCTTGTAATTTCTCATAATCCATGTAAGATTTAGGTGATGCACATCATTAAAGTAGAGACTCCATATAGGTGATTACTGATAACTAAATAAGAAAAAGGAGAATCCATATAATCAAACGCTAATTGCTTTTGAGAGTTGGAAAATCTCTAGTTTCCTAGAACTGAAATTTGTTTTATAAAAAAATAGTGTCTTTTATTTGTTTTAGTTGGAAAAATTGTTTGAGTGTTGAGATGAAATCGACCTGCTGAGCAGATATAAGATGATATAGATTTTCTCTACTAGTTTGAGCTATACTTGAACAAAATGAGGGTTCACTTGTTTAGGAGATCAACTAGTAGTTAAAAAAATAGCAGACATGGAACAGAAAACCACATATATAAGCAGGTCTCCAATGATTGAAAATACACCAGATTGAATCTACAAAGGTTGTTAAGTAATGCAAGTGCACTATAGGGTCTTAGTACCCCACCCCCACATACATGGGTTGGTGCACTGGGTAGTCCACTTTCACTTGATTGTATGCATCGATATGAAGACAAATTGGCATCCAGTTAGAATGATGTATTTCTTCATAAGTTTGAAATATTTGTAACTTAAAAATCAATTGAGTTTGCTCTTACAAACTATTGACAGGTAAGTTATTTTGGTGCTCTGTTATAATTTAATTCAGGGTTAGTCATCTGGTGTTCTGAGAAGCCTATTCAATTTATAGAAGATACAGGCTTTGGTTAATCCTCATGTAGTCCTGTCTGTTTGTGTGTATATATAGGTACTTTTATATCTTCCTCTTTAAAATTTGGTATCATTACTTTATAGAAAAAGACTATCTTAGAATTTCGTCTCCCTCCCCCCCCCCCCCCCCCCCCAAGAAAAAAGTACCATTCTATACATCACTGAAATTGTGTGTTTCCCTATTTAGAAACGAGTAGTGCATATGAATCATACTGGTGTGAAGGTTTATGAGGAACAAACGAACTGCGAGTTATCTCATTTGAATTTAAGATTTCTCCAAGAAAGTCATGGTTCCCTCATCGAATTATCTTGGCTTGTCACTGTTAAGCACCTTTATTTCTTGACCAGAGGTTGATTTCCTACATCAGTACTTACTATCTGCTTGTGTGGATTTTGCATGATTTTGTGGTGCTTTTGACTTGAGCTAGGAGAAGGGGGAAAGAGAACTCCCAAATGATGTTAACCTCCTTTAATTGACATTTAGAGCAATCAGGTTCATGTAGCACTACCTCGTGAACCTATGACCTCCAAATTCCTATTAGCATCAGAGAAATCTATATACTTTATTTTGAGCTAGTATTCATAGCTTCCAGGTAGTTGGTTGCTGATTTGATTCATGGTTACAGGTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACTCTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGCTAGATAGTTGCTGCTTCTTTGATTATTGTTGCCCACCGGTGGAATCATTTTTATTCTTGCGGCATTGCAGAATTCAGGCATTCGGATGTGGCAACCTGATGATCTTCAAAGTCTGGCTTAGAATTGGTTGTAGATATTTATACATTTATTCTTCTTAGTCAGAGAAATTTCCCTAGTGTAGTATATCCTTGTCTTTTCCTTTTTTTGCATCTCTCTAAGGAGAAAATACAGTT</genome_strand>
        <mrna_strand>GCATGATGTTGACTGCATGGCTCTTTTAATGGACGGAAGTGCAGCTTTAGGTCTTGATCTGAGCTTTGTGACACATGTTTATTTAATGGAGCCAATTTGGGACAAAAG........................................................................................................................................................................................................................................................................................................................................TATGGAGGAACAGGTGATCAGTCGTGCTCATCGGATGGGTGCTACACGTCCTATTCTCGTGGAAACACTGGCGATGAGTGGCACAATTGAGGAGCAAATGATGAAGTTCTTACAG..............................................................................................................................................................................................................................GAGGCTGATGAAGGTAGGAGGTTGTTGAAGGAAGAATATGGTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTTAACTTTGTTCGGACTAGTTCCAAGGCATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACTCTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGCTAGATAGTTGCTGCTTCTTTGATTATTGTTGCCCACCGGTGGAATCATTTTTATTCTTGCGGCATTGCAGAATTCAGGCATTCGGATGTGGCAACCTGATGATCTTCAAAGTCTGGCTTAGAATTGGTTGTAGATATTTATACATTTATTCTTCTTAGTCAGAGAAATTTCCCTAGTGTAGTATATCCTTGTCTTTTCCTTTTTTTGCATCTCTGTAAGGAGAAAATACAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304985" ref_strand="+" ref_description="SGN-E304985 [cLEX-10-L12]">
      <seq>gtgatcagtcgtgctcatcggatgggtgctacacgtcctattctcgtggaaacactggcgatgagtggcacaattgaggagcaaatgatgaagttcttacaggaggctgatgaaggtaggaggttgttgaaggaagaatatggtaaactgggtcatgatggagcacgagcaccacgcacattacatgatttcgctgaaagcaattatctcactcgccttaactttgttcggactagttccaaggcatgaaggtggacgattccattgttttgatgaactggcactgcagggtctcgtcaatcgctgactctggcaatctattctgccttgctgagttgtgccaagaggcccaagactatttatgctagatagttgctgcttctttgattattgttgcccaccggtggaatcatttttattcttgcggcattgcagaattcaggcattcggatgtggcaacctgatgatcttcaaagtctggcttagaattggttgtagatatttatacatttattcttcttagtcagagaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="105982" stop="101434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105682" g_stop="105581" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105580" i_stop="105359" i_length="222">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105358" g_stop="105210" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="251" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105209" i_stop="102018" i_length="3192">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102017" g_stop="101734" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="535" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E304985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105682" e_stop="105581"/>
          <exon e_start="105358" e_stop="105210"/>
          <exon e_start="102017" e_stop="101734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATCAGTCGTGCTCATCGGATGGGTGCTACACGTCCTATTCTCGTGGAAACACTGGCGATGAGTGGCACAATTGAGGAGCAAATGATGAAGTTCTTACAGGTATTTCTGTCTCTAATGAATGTTACAGTTATTAGGATTAATCCTCTGACCGGAGATCTGCATTAATTTCATCTCTGCCGAAAAGGATATCATCCTGATTTCTTAGTTCATTTATTGGAAGTTCCATTTTCTTACTTTGATCAACATTTAGGGTGATTATTAAGTGAAATTTTCCCAAATACTTTTCAACTCGAATTTACAGTTTTGGTATAACTATTGCAGGAGGCTGATGAAGGTAGGAGGTTGTTGAAGGAAGAATATGGTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTTAACTTTGTTCGGACTAGTTCCAAGGCATGAAGGTACAGAAATGTAACCATACGAGTAATTCCAAGTTGAAGTAACTTTACTTCTTTTGTTGTTTCATGCATTATGGGTTTTGTTTTTTGCTGCTATTATGTAATTAGCGTTCGTGCTCTGTGAATCTTCTTCCTTTAGAAAATTCTGTAGCTTTTTGGAACTCGCAGCCATGGCTTATAATTTCAGACCAAAGGGAGATGGATATTTATAATCCCATTACCATTCTTTATATTATTACCTCCATGTTCTGCACAGGGTGTAAGTAGCGCATATAGAAGTTGCAATGAGAGTATGTTGCTTGAGATGGTTTGGTCATGGCTTATGTAAGACTCCAAATACATCCCTTGGTACAAACAATGTTTTGGAAAGCGAGAAGCAGAAAAAAACGACGAGGGCTTGCTTCACTGAAGTGAGTCACATGCTTTTTTCAAATGAAGTGCTATTTAGTATAAAACTAGAAAATATTAAATATGCATAGATAATCTAGGAAATCATCTTCTTTTAGAAAATTTTTAGGCTTTTTGGAACTCGCAGACATGACCTATACATTTCAGACCAAAGGGAGATGGATTTTTATGATCCCATTACCATTCTTATATTATTACCTCCATATTCTGCACAGGGTGTAAGTAGCGCATATAGAGTGTCAATGAGAGTATTTTGATTGAGATAGTTTTTTCATGTCTTATGTAAGACCCAAATACATCCCTTGGTACAATCAGGGTTTTGGAAAGCGAGCGGAAAAAAGCAACTAGGGCTTGCTTCACCAAAGCGTGAAGCGAAGCGCATGCTTTTTTCAAATAAAGTGCTATCTAGTACTCCCTCCGTCCCATTTTATGTGGCAACTGACCCGTCACGGAGTTTAAGAAATAAATGAAGACTTTGAAATGTCTACCGAAGTGCCCTTCAAAAAAGTCCAAAGGTAGACTCACTTTTCTCTCTCCTCATAAATGTATTGGAGTACTATCTTTAAAATTAAGAGGGACCAACAAGGTAAAAGAGGAATTGTACATTTAAATATTTACCATAAGAAAAAGTGACATTCTTTTTGGGACTGACCAAAAAGGAAATGGCGCCACATAAAAGGGATGGAGGGAGTATAAAACTAGAAAATATTAAATACTTATAGATAAATAATCAAGAACTCAAGAAAGGTATCATATTTAGCAAATCTTTCAATTCTTAGATTGAAAAGTAAATAATAGATACTAGAAATAGATATTGAATAAGAAAATACAACTTACTACAAGCAAAAACAGCAGAGTGTCTGAGTCACAGGAAGCGAAAAAACAAAGGAAAAAAAATAGAGCAGAACAGAGCAGCAAAACAAAAAAGTAAAAGTAAAGCAGATCATACCCAGTAGCACTACAAACAGAGGAATCTTAAATCAGTAGAAATAAAAAGAGAGTAATGCTACTTAAGTAGCATTACAAACAGCAAACTGAAACGTAAAAAAAAAACTATTTACCTTGTGGAGCAGAGAAACAAAAAGAGAAAAACTGACGCAAGTATTTTTATATTTGAGTCCAGCAGTAGTCGACAAAGGTAAATATTTGGTAAAATTTCCGTAAGTATATTTACAGAAAGTATATGAAAACCTAGTTAGCGCTTATTTCTTAAAAGCCGAGCCTTTTCTCGCTCTAATAAAAAGCACGCTTCTCTCTCTCTTTGGAAAGAAGCTCACGCTTCTTCACCATTGGGTCGCTTCAGGGCATTAGAGCGACAGCCTGTTGCTTCACATTTGTAACAACAGTGGGTACAATGCTGTGCTGATTGAAGACTTAAAATGAGACGAAATAGACTTGAACTCATATGGAGAGAAGTCGTCTAAAGAAGCTTGTAATTTCTCATAATCCATGTAAGATTTAGGTGATGCACATCATTAAAGTAGAGACTCCATATAGGTGATTACTGATAACTAAATAAGAAAAAGGAGAATCCATATAATCAAACGCTAATTGCTTTTGAGAGTTGGAAAATCTCTAGTTTCCTAGAACTGAAATTTGTTTTATAAAAAAATAGTGTCTTTTATTTGTTTTAGTTGGAAAAATTGTTTGAGTGTTGAGATGAAATCGACCTGCTGAGCAGATATAAGATGATATAGATTTTCTCTACTAGTTTGAGCTATACTTGAACAAAATGAGGGTTCACTTGTTTAGGAGATCAACTAGTAGTTAAAAAAATAGCAGACATGGAACAGAAAACCACATATATAAGCAGGTCTCCAATGATTGAAAATACACCAGATTGAATCTACAAAGGTTGTTAAGTAATGCAAGTGCACTATAGGGTCTTAGTACCCCACCCCCACATACATGGGTTGGTGCACTGGGTAGTCCACTTTCACTTGATTGTATGCATCGATATGAAGACAAATTGGCATCCAGTTAGAATGATGTATTTCTTCATAAGTTTGAAATATTTGTAACTTAAAAATCAATTGAGTTTGCTCTTACAAACTATTGACAGGTAAGTTATTTTGGTGCTCTGTTATAATTTAATTCAGGGTTAGTCATCTGGTGTTCTGAGAAGCCTATTCAATTTATAGAAGATACAGGCTTTGGTTAATCCTCATGTAGTCCTGTCTGTTTGTGTGTATATATAGGTACTTTTATATCTTCCTCTTTAAAATTTGGTATCATTACTTTATAGAAAAAGACTATCTTAGAATTTCGTCTCCCTCCCCCCCCCCCCCCCCCCCCAAGAAAAAAGTACCATTCTATACATCACTGAAATTGTGTGTTTCCCTATTTAGAAACGAGTAGTGCATATGAATCATACTGGTGTGAAGGTTTATGAGGAACAAACGAACTGCGAGTTATCTCATTTGAATTTAAGATTTCTCCAAGAAAGTCATGGTTCCCTCATCGAATTATCTTGGCTTGTCACTGTTAAGCACCTTTATTTCTTGACCAGAGGTTGATTTCCTACATCAGTACTTACTATCTGCTTGTGTGGATTTTGCATGATTTTGTGGTGCTTTTGACTTGAGCTAGGAGAAGGGGGAAAGAGAACTCCCAAATGATGTTAACCTCCTTTAATTGACATTTAGAGCAATCAGGTTCATGTAGCACTACCTCGTGAACCTATGACCTCCAAATTCCTATTAGCATCAGAGAAATCTATATACTTTATTTTGAGCTAGTATTCATAGCTTCCAGGTAGTTGGTTGCTGATTTGATTCATGGTTACAGGTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACTCTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGCTAGATAGTTGCTGCTTCTTTGATTATTGTTGCCCACCGGTGGAATCATTTTTATTCTTGCGGCATTGCAGAATTCAGGCATTCGGATGTGGCAACCTGATGATCTTCAAAGTCTGGCTTAGAATTGGTTGTAGATATTTATACATTTATTCTTCTTAGTCAGAGAAATTT</genome_strand>
        <mrna_strand>GTGATCAGTCGTGCTCATCGGATGGGTGCTACACGTCCTATTCTCGTGGAAACACTGGCGATGAGTGGCACAATTGAGGAGCAAATGATGAAGTTCTTACAG..............................................................................................................................................................................................................................GAGGCTGATGAAGGTAGGAGGTTGTTGAAGGAAGAATATGGTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTTAACTTTGTTCGGACTAGTTCCAAGGCATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACTCTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGCTAGATAGTTGCTGCTTCTTTGATTATTGTTGCCCACCGGTGGAATCATTTTTATTCTTGCGGCATTGCAGAATTCAGGCATTCGGATGTGGCAACCTGATGATCTTCAAAGTCTGGCTTAGAATTGGTTGTAGATATTTATACATTTATTCTTCTTAGTCAGAGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347035" ref_strand="+" ref_description="SGN-E347035 [cTOF-25-B15]">
      <seq>acagaaagttatcatattttctcagtttctggagcacatacatgtaattgaacagcagttagcaattgctggtatcagttttgccagtttgtatagtccaatgccttccattagcaaggtgaaagcactgttaacatttcagcatgatgttgactgcatggctcttttaatggacggaagtgcagctttaggtcttgatctgagctttgtgacacatgtttatttaatggagccaatttgggacaaaagtatggaggaacaggtgatcagtcgtgctcatcggatgggtgctacacgtcctattctcgtggaaacactggcgatgagtggcacaattgaggagcaaatgatgaagttcttacaggaggctgatgaaggtaggaggttgttgaaggaagaatatggtaaactgggtcatgatggagcacgagcaccacgcacattacatgatttcgctgaaagcaattatctcactcgccttaactttgttcggactagttccaaggcatgaaggtggacgattccattgttttgatgaactggcactgcagggtctcgtcaatcgctgactctggcaatctattctgccttgctgagttgtgccaagaggcccaagactatttatgctagatagttgctgcttctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="106763" stop="101582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106463" g_stop="106406" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106405" i_stop="106323" i_length="83">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106322" g_stop="106263" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="118" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106262" i_stop="106155" i_length="108">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106154" g_stop="106024" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="249" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106023" i_stop="105696" i_length="328">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105695" g_stop="105581" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="364" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105580" i_stop="105359" i_length="222">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105358" g_stop="105210" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="513" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105209" i_stop="102018" i_length="3192">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102017" g_stop="101882" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="649" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E347035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106463" e_stop="106406"/>
          <exon e_start="106322" e_stop="106263"/>
          <exon e_start="106154" e_stop="106024"/>
          <exon e_start="105695" e_stop="105581"/>
          <exon e_start="105358" e_stop="105210"/>
          <exon e_start="102017" e_stop="101882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAAAGTTATCATATTTTCTCAGTTTCTGGAGCACATACATGTAATTGAACAGCAGGTAATGGTACTTCATTGTGAGCATTTCTGTTCAATATTTTAATTATCATTTGATGGTTTGATCACTCCATGTTCTCCTGGCAGTTAGCAATTGCTGGTATCAGTTTTGCCAGTTTGTATAGTCCAATGCCTTCCATTAGCAAGGTATGACTGTTTAACCATTCTGATTTTTATGATTATCTTTCTAACAAACTTTGTTGGATGGTTGCTGTGGTATTTTCGGAATTATTAAGTTATACTTGCATGATTCAGGTGAAAGCACTGTTAACATTTCAGCATGATGTTGACTGCATGGCTCTTTTAATGGACGGAAGTGCAGCTTTAGGTCTTGATCTGAGCTTTGTGACACATGTTTATTTAATGGAGCCAATTTGGGACAAAAGGTAATAGATATGTTTAGTTTACTGTGTGATTATGCATACCTTATGAATGTAGGCTTTGTGTTTGTTTCCTTGTAATGCCTTGGGAAAAAGCCCATGGTTATGTAGTTGCATAAGTTTAACTTGTCCAAAGACAACCTTCCGGATAATAAACTGGAAAGCTGACCAGCTGACATTTTGGGGAAAAAAATTCCAAGCGGTGAAAAATGCCCAATACTTTCTCCTAGACTTCATTTGACTACTGTTCTCTGAGAATCAAAAAGCTACTTCTGCGGAGTGTCTGCGCAGCTTTCTAACACATTATTGTTTGACTTCTCGTGATACTTATCAGTATGGAGGAACAGGTGATCAGTCGTGCTCATCGGATGGGTGCTACACGTCCTATTCTCGTGGAAACACTGGCGATGAGTGGCACAATTGAGGAGCAAATGATGAAGTTCTTACAGGTATTTCTGTCTCTAATGAATGTTACAGTTATTAGGATTAATCCTCTGACCGGAGATCTGCATTAATTTCATCTCTGCCGAAAAGGATATCATCCTGATTTCTTAGTTCATTTATTGGAAGTTCCATTTTCTTACTTTGATCAACATTTAGGGTGATTATTAAGTGAAATTTTCCCAAATACTTTTCAACTCGAATTTACAGTTTTGGTATAACTATTGCAGGAGGCTGATGAAGGTAGGAGGTTGTTGAAGGAAGAATATGGTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTTAACTTTGTTCGGACTAGTTCCAAGGCATGAAGGTACAGAAATGTAACCATACGAGTAATTCCAAGTTGAAGTAACTTTACTTCTTTTGTTGTTTCATGCATTATGGGTTTTGTTTTTTGCTGCTATTATGTAATTAGCGTTCGTGCTCTGTGAATCTTCTTCCTTTAGAAAATTCTGTAGCTTTTTGGAACTCGCAGCCATGGCTTATAATTTCAGACCAAAGGGAGATGGATATTTATAATCCCATTACCATTCTTTATATTATTACCTCCATGTTCTGCACAGGGTGTAAGTAGCGCATATAGAAGTTGCAATGAGAGTATGTTGCTTGAGATGGTTTGGTCATGGCTTATGTAAGACTCCAAATACATCCCTTGGTACAAACAATGTTTTGGAAAGCGAGAAGCAGAAAAAAACGACGAGGGCTTGCTTCACTGAAGTGAGTCACATGCTTTTTTCAAATGAAGTGCTATTTAGTATAAAACTAGAAAATATTAAATATGCATAGATAATCTAGGAAATCATCTTCTTTTAGAAAATTTTTAGGCTTTTTGGAACTCGCAGACATGACCTATACATTTCAGACCAAAGGGAGATGGATTTTTATGATCCCATTACCATTCTTATATTATTACCTCCATATTCTGCACAGGGTGTAAGTAGCGCATATAGAGTGTCAATGAGAGTATTTTGATTGAGATAGTTTTTTCATGTCTTATGTAAGACCCAAATACATCCCTTGGTACAATCAGGGTTTTGGAAAGCGAGCGGAAAAAAGCAACTAGGGCTTGCTTCACCAAAGCGTGAAGCGAAGCGCATGCTTTTTTCAAATAAAGTGCTATCTAGTACTCCCTCCGTCCCATTTTATGTGGCAACTGACCCGTCACGGAGTTTAAGAAATAAATGAAGACTTTGAAATGTCTACCGAAGTGCCCTTCAAAAAAGTCCAAAGGTAGACTCACTTTTCTCTCTCCTCATAAATGTATTGGAGTACTATCTTTAAAATTAAGAGGGACCAACAAGGTAAAAGAGGAATTGTACATTTAAATATTTACCATAAGAAAAAGTGACATTCTTTTTGGGACTGACCAAAAAGGAAATGGCGCCACATAAAAGGGATGGAGGGAGTATAAAACTAGAAAATATTAAATACTTATAGATAAATAATCAAGAACTCAAGAAAGGTATCATATTTAGCAAATCTTTCAATTCTTAGATTGAAAAGTAAATAATAGATACTAGAAATAGATATTGAATAAGAAAATACAACTTACTACAAGCAAAAACAGCAGAGTGTCTGAGTCACAGGAAGCGAAAAAACAAAGGAAAAAAAATAGAGCAGAACAGAGCAGCAAAACAAAAAAGTAAAAGTAAAGCAGATCATACCCAGTAGCACTACAAACAGAGGAATCTTAAATCAGTAGAAATAAAAAGAGAGTAATGCTACTTAAGTAGCATTACAAACAGCAAACTGAAACGTAAAAAAAAAACTATTTACCTTGTGGAGCAGAGAAACAAAAAGAGAAAAACTGACGCAAGTATTTTTATATTTGAGTCCAGCAGTAGTCGACAAAGGTAAATATTTGGTAAAATTTCCGTAAGTATATTTACAGAAAGTATATGAAAACCTAGTTAGCGCTTATTTCTTAAAAGCCGAGCCTTTTCTCGCTCTAATAAAAAGCACGCTTCTCTCTCTCTTTGGAAAGAAGCTCACGCTTCTTCACCATTGGGTCGCTTCAGGGCATTAGAGCGACAGCCTGTTGCTTCACATTTGTAACAACAGTGGGTACAATGCTGTGCTGATTGAAGACTTAAAATGAGACGAAATAGACTTGAACTCATATGGAGAGAAGTCGTCTAAAGAAGCTTGTAATTTCTCATAATCCATGTAAGATTTAGGTGATGCACATCATTAAAGTAGAGACTCCATATAGGTGATTACTGATAACTAAATAAGAAAAAGGAGAATCCATATAATCAAACGCTAATTGCTTTTGAGAGTTGGAAAATCTCTAGTTTCCTAGAACTGAAATTTGTTTTATAAAAAAATAGTGTCTTTTATTTGTTTTAGTTGGAAAAATTGTTTGAGTGTTGAGATGAAATCGACCTGCTGAGCAGATATAAGATGATATAGATTTTCTCTACTAGTTTGAGCTATACTTGAACAAAATGAGGGTTCACTTGTTTAGGAGATCAACTAGTAGTTAAAAAAATAGCAGACATGGAACAGAAAACCACATATATAAGCAGGTCTCCAATGATTGAAAATACACCAGATTGAATCTACAAAGGTTGTTAAGTAATGCAAGTGCACTATAGGGTCTTAGTACCCCACCCCCACATACATGGGTTGGTGCACTGGGTAGTCCACTTTCACTTGATTGTATGCATCGATATGAAGACAAATTGGCATCCAGTTAGAATGATGTATTTCTTCATAAGTTTGAAATATTTGTAACTTAAAAATCAATTGAGTTTGCTCTTACAAACTATTGACAGGTAAGTTATTTTGGTGCTCTGTTATAATTTAATTCAGGGTTAGTCATCTGGTGTTCTGAGAAGCCTATTCAATTTATAGAAGATACAGGCTTTGGTTAATCCTCATGTAGTCCTGTCTGTTTGTGTGTATATATAGGTACTTTTATATCTTCCTCTTTAAAATTTGGTATCATTACTTTATAGAAAAAGACTATCTTAGAATTTCGTCTCCCTCCCCCCCCCCCCCCCCCCCCAAGAAAAAAGTACCATTCTATACATCACTGAAATTGTGTGTTTCCCTATTTAGAAACGAGTAGTGCATATGAATCATACTGGTGTGAAGGTTTATGAGGAACAAACGAACTGCGAGTTATCTCATTTGAATTTAAGATTTCTCCAAGAAAGTCATGGTTCCCTCATCGAATTATCTTGGCTTGTCACTGTTAAGCACCTTTATTTCTTGACCAGAGGTTGATTTCCTACATCAGTACTTACTATCTGCTTGTGTGGATTTTGCATGATTTTGTGGTGCTTTTGACTTGAGCTAGGAGAAGGGGGAAAGAGAACTCCCAAATGATGTTAACCTCCTTTAATTGACATTTAGAGCAATCAGGTTCATGTAGCACTACCTCGTGAACCTATGACCTCCAAATTCCTATTAGCATCAGAGAAATCTATATACTTTATTTTGAGCTAGTATTCATAGCTTCCAGGTAGTTGGTTGCTGATTTGATTCATGGTTACAGGTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACTCTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGCTAGATAGTTGCTGCTTCTTTGA</genome_strand>
        <mrna_strand>ACAGAAAGTTATCATATTTTCTCAGTTTCTGGAGCACATACATGTAATTGAACAGCAG...................................................................................TTAGCAATTGCTGGTATCAGTTTTGCCAGTTTGTATAGTCCAATGCCTTCCATTAGCAAG............................................................................................................GTGAAAGCACTGTTAACATTTCAGCATGATGTTGACTGCATGGCTCTTTTAATGGACGGAAGTGCAGCTTTAGGTCTTGATCTGAGCTTTGTGACACATGTTTATTTAATGGAGCCAATTTGGGACAAAAG........................................................................................................................................................................................................................................................................................................................................TATGGAGGAACAGGTGATCAGTCGTGCTCATCGGATGGGTGCTACACGTCCTATTCTCGTGGAAACACTGGCGATGAGTGGCACAATTGAGGAGCAAATGATGAAGTTCTTACAG..............................................................................................................................................................................................................................GAGGCTGATGAAGGTAGGAGGTTGTTGAAGGAAGAATATGGTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTTAACTTTGTTCGGACTAGTTCCAAGGCATGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACTCTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGCTAGATAGTTGCTGCTTCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704713" ref_strand="+" ref_description="SGN-E704713 [FA25AC02]">
      <seq>gatttgcagaatattcctccttgcatcaagaaagtaacactcttaaattttactgaagaacatgcaagaacttataatgaattggtagaaaccgtgcggagaaacatactaatggcagactggaatgatccttctcatgttgagagtttactgaaccctaaacaatggaaattccgaagtacaaccatcagaaatgtaagactttcgtgctgtgtagcaggacatatcagagtaacagaggcaggtgatgatattcaagaaactatggatatcttagttgaggatggtctggatccctcttcagaggagtatggtctgataaaatatcacattttatttggtggaaactgcatgaggtgtaaagcatggtgccgtctaccagtgattacaccttgtaaacatctattatgccttgactgtgtttctttagatagcgagaagtgtacaatttctggctgtggtaacttgtatgagatgcaaagtcctgaaacactggcccgtcctgaaaatccaaatccaaagtggcccgttccaaaggatctgattgagttgcaaccatcttataaacaggatgactggaatcccgattggcaatcaacatctagcagtaaagttgcttatcttgttggtagattaaaggacataaaggaagctaataggatgattattatctctaacgaggacaaaattgttgagactagtgtatctcatgtccatactacgataaacaatttcagcatgttttcatcgccgcagtatttggttgggccagcaaatgatttctgcaatataaatccacagaaagttatcatattttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="107765" stop="106141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107465" g_stop="107110" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107109" i_stop="107013" i_length="97">
            <donor d_prob="0.345" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107012" g_stop="106799" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="570" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106798" i_stop="106691" i_length="108">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106690" g_stop="106441" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="820" r_length="250" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E704713" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107465" e_stop="107110"/>
          <exon e_start="107012" e_stop="106799"/>
          <exon e_start="106690" e_stop="106441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGTCTGGATCCCACTTCAGAGGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAGGTTAGTCATAGCCTCTGAGATCATATGTGGGCAATGTTTTCGTTTAGACCAAATGCATCATGATTTTGATTTTGTTTTCTAAAAATAATTTATGTAGGTGTAAAGCATGGTGCCGTCTACCAGTGATTACACCTTGTAAACATCTATTATGCCTTGACTGTGTTTCTTTAGATAGCGAGAAGTGTACAATTTCTGGCTGTGGTAACTTGTATGAGATGCAAAGTCCTGAAACACTGGCCCGTCCTGAAAATCCAAATCCAAAGTGGCCCGTTCCAAAGGATCTGATTGAGTTGCAACCATCTTATAAACAGGTAGGTCTAATCCTCAAGGACATACATATTGGGCAAGACCTAGTTTATAGTTCATTTTTTTTTATCCCGTAACAAACTACTTACTAATATTTGATTATTCTTCTGAAGGATGACTGGAATCCCGATTGGCAATCAACATCTAGCAGTAAAGTTGCTTATCTTGTTGGTAGATTAAAGGAAATAAAGGAAGCTAATAGGATGATTATTATCTCTAACGAGGACAAAATTGTTGAGACTAGTGTATCTCATGTACATACTAGGATAAACAATTTCAGCATGTTTTCATCGCAGCAGTATTTGGTTGGGCCAGCAAATGATTTCTGCAATATAAATCCACAGAAAGTTATCATATTTTCTC</genome_strand>
        <mrna_strand>GATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGTCTGGATCCCTCTTCAGAGGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAG.................................................................................................GTGTAAAGCATGGTGCCGTCTACCAGTGATTACACCTTGTAAACATCTATTATGCCTTGACTGTGTTTCTTTAGATAGCGAGAAGTGTACAATTTCTGGCTGTGGTAACTTGTATGAGATGCAAAGTCCTGAAACACTGGCCCGTCCTGAAAATCCAAATCCAAAGTGGCCCGTTCCAAAGGATCTGATTGAGTTGCAACCATCTTATAAACAG............................................................................................................GATGACTGGAATCCCGATTGGCAATCAACATCTAGCAGTAAAGTTGCTTATCTTGTTGGTAGATTAAAGGACATAAAGGAAGCTAATAGGATGATTATTATCTCTAACGAGGACAAAATTGTTGAGACTAGTGTATCTCATGTCCATACTACGATAAACAATTTCAGCATGTTTTCATCGCCGCAGTATTTGGTTGGGCCAGCAAATGATTTCTGCAATATAAATCCACAGAAAGTTATCATATTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374909" ref_strand="+" ref_description="SGN-E374909 [TUS-15-A23]">
      <seq>aaaaagagaagtgtcctgatgcaagttcattggctgagaattatgttagatgaaggtcatacccttggttcaagtttaactttgaccaacaaactgcaaatggctgtttctttgcgtgctaccaatcgctggttattaactggaacaccaactccaaacacccccagtagccagctttctcatctgcaacccttgcttaagtttctccatgatgaaacttatggacagaatcagaaagcctgggaagctggtattctcaagccattcgaagcagagatggaagagggtcggtcacgtttgctacagttacttcacaggtgcatgatcagtgccaggaaaaaagatttgcagaatattcctccttgcatcaagaaagtaacactcttaaattttactgaagaacatgcaagaacttataatgaattggtagaaaccgtgcggagaaacatactaatggcagactggaatgatccttctcatgttgagagtttactgaaccctaaacaatggaaattccgaagtacaaccatcagaaatgtaagactttcgtgctgtgtagcaggacatatcagagtaacagaggcaggtgatgatattcaagaaactatggatatcttagttgaggatggtctggatcccacttcagaggagtatggtctgataaaatatcacattttatttggtggaaactgcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="108107" stop="106810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107807" g_stop="107110" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E374909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107807" e_stop="107110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGTCTGGATCCCACTTCAGAGGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAG</genome_strand>
        <mrna_strand>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGTCTGGATCCCACTTCAGAGGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201574" ref_strand="+" ref_description="SGN-E201574 [cLEC-11-E5]">
      <seq>aaaaagagaagtgtcctgatgcaagttcattggctgagaattatgttagatgaaggtcatacccttggttcaagtttaactttgaccaacaaactgcaaatggctgtttctttgcgtgctaccaatcgctggttattaactggaacaccaactccaaacacccccagtagccagctttctcatctgcaacccttgcttaagtttctccatgatgaaacttatggacagaatcagaaagcctgggaagctggtattctcaagccattcgaagcagagatggaagagggtcggtcacgtttgctacagttacttcacaggtgcatgatcagtgccaggaaaaaagatttgcagaatattcctccttgcatcaagaaagtaacactcttaaattttactgaagaacatgcaagaacttataatgaattggtagaaaccgtgcggagaaacatactaatggcagactggaatgatccttctcatgttgagagtttactgaaccctaaacaatggaaattccgaagtacaaccatcagaaatgtaagactttcgtgctgtgtagcaggacatatcagagtaacagaagcaggtgatgatattcaagaaactatggatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="108107" stop="106893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107807" g_stop="107193" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E201574" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107807" e_stop="107193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATC</genome_strand>
        <mrna_strand>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAAGCAGGTGATGATATTCAAGAAACTATGGATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379472" ref_strand="+" ref_description="SGN-E379472 [TUS-1-L3]">
      <seq>aaaaagagaagtgtcctgatgcaagttcattggctgagaattatgttagatgaaggtcatacccttggttcaagtttaactttgaccaacaaactgcaaatggctgtttctttgcgtgctaccaatcgctggttattaactggaacaccaactccaaacacccccagtagccagctttctcatctgcaacccttgcttaagtttctccatgatgaaacttatggacagaatcagaaagcctgggaagctggtattctcaagccattcgaagcagagatggaagagggtcggtcacgtttgctacagttacttcacaggtgcatgatcagtgccaggaaaaaagatttgcagaatattcctccttgcatcaagaaagtaacactcttaaattttactgaagaacatgcaagaacttataatgaattggtagaaaccgtgcggagaaacatactaatggcagactggaatgatccttctcatgttgagagtttactgaaccctaaacaatggaaattccgaagtacaaccatcagaaatgtaagactttcgtgctgtgtagcaggacatatcagagtaacagaggcaggtgatgatattcnagaaactatggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="108107" stop="106894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107807" g_stop="107194" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E379472" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107807" e_stop="107194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATAT</genome_strand>
        <mrna_strand>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCNAGAAACTATGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344324" ref_strand="+" ref_description="SGN-E344324 [cTOF-16-F17]">
      <seq>tgacagtttcgaaaccctaacttctccatgaattcttagctccgaagcttcaaattcagcgatggagggtgattattcaatcccagaccacaagctatgtggtttctttcttacagccgttgaaatttcgtctccgccgcactcctccgagctccatagcaccctccctttaaattcacagtgctacatcgccggagacggttctaatatccactttgtaacggataacgacgttgaattgtgtcccattggttctcatacggaagaggaccggaatgatgttgttccgatgaagaagcggagcagaattggaatggtgaatggtagtataagcgtggtgcatcagttgcacaaacttgtaatgcaaaaatgcttgaagattgttgctagggttcttgaggttgtggagcgtggccatgatgaagaagttagggctgttgttcttgtggatgtgtacttgcctttagctttgtggtccggttggcagttccccaagtctggccctgttgctgcagcacttttccggcatatcagttgtgactgggatgcttggagttctatgcttcagtctgctaaacttggtgttgaaaaggattttagtatttggaatctgtccgactgtcatgttctaggatgcaaactgcattgcagtgcatctgacccttnncaagaaaagctctttgagctccatgaaattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="-" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="111597" stop="109238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111297" g_stop="110764" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110763" i_stop="109705" i_length="1059">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109704" g_stop="109538" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="701" r_length="167" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="-" ref_id="SGN-E344324" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111297" e_stop="110764"/>
          <exon e_start="109704" e_stop="109538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGTTTCGAAACCCTAACTTCTCCATGAATTCTTAGCTCCGAAGCTTCAAATTCAGCGATGGAGGGTGATTATTCAATCCCAGACCACAAGCTATGTGGTTTCTTTCTTACAGCCGTTGAAATTTCGTCTCCGCCGCACTCCTCCGAGCTCCATAGCACCCTCCCTTTAAATTCACAGTGCTACATCGCCGGAGACGGTTCTAATATCCACTTTGTAACGGATAACGACGTTGAATTGTGTCCCATTGGTTCTCATACGGAAGAGGACCGGAATGATGTTGTTCCGATGAAGAAGCGGAGCAGAATTGGAATGGTGAATGGTAGTATAAGCGTGGTGCATCAGTTGCACAAACTTGTAATGCAAAAATGCTTGAAGATTGTTGCTAGGGTTCTTGAGGTTGTGGAGCGTGGCCATGATGAAGAAGTTAGGGCTGTTGTTCTTGTGGATGTGTACTTGCCTTTAGCTTTGTGGTCCGGTTGGCAGTTCCCCAAGTCTGGCCCTGTTGCTGCAGCACTTTTCCGGCATATCAGGTAGTGATATCAAGTATAAATTGTTAAAAGTTCGAAAATATGAACTGAAAAAAATGAATTTGATTGGGATCTTAGAAAAAGTTAAAATCAATAAGAATGCAGTTAACCCCTGTAATCCATGAAAGTCTGTTAATTACTTTTTATCAATAATTGCTCGAGCATTCTGTGTGCTTACCTGACACTGGGACTGCTCAGCTTAGTAGTCCAGGTGCTGTGCAAGTGTGCAAGCTCTGAAAACACTAAATCCATTTCATATTTGTATATTGAGATTTTATGAATATTACCTACTTAGATTGTGATTATTCTATGTTTTTATCTTAACCAGCATACATTTGTGAAATCAATTAGTACAACCAACCTGTAGTGGTGGCAATGGTGGGAGAAATCAAGTATAGAATGGAAATAGTCGTGGTGCATCAAGTTAGGCAGGACACTAAAGTTATATTCTATGTATGTTTAGTATAGTGGAAGGAACTGTCCAGCTCTCTTGCTAGTCAAGCTACTGATAAGATCATTTTAGTAATTAGTGAACAATGATGGATGATTAATTTAGGGATGCCAATGACTCAATAGGAGCAACATTGTATTAGAATCGGGGTTGTAGATTAATAGTATATTAAGTGCTAAAAGTTTTTCTTCCCCTTTTCTGTTTGGGTGATAATTATTCTGACAAAACAAAGAGACAAAACTTTCCTTTGCATCTCTCCTTTGATTTAGTTGAAGTCATTGTGACATGAATATGCCATAAATTTTTTAGAAAGTGCAATTCCAATGAAGATGGAATCAGATATTCTTCTATGGAGTTTAGGTTGTCGAATTAGCAGTTGAAATAAATATTAATTATCTAATATAATAACACCATCACACCAAGTGACCTGATGAGCAGTTCTTGAATCTATAAAGTATTAACAGTGGTTCGTAGAATTTCTAGTTGAGTTGGAGCTTTAGAAAATTGTGTTGCATTTAATTGTCTATGCAGCTAATGCTGATTTATGTCCTAAATATTTAATGCAGCTGTGCAGCTGATTCTAATGAAATGTCCCTAATTTTTCTTTGCAGTTGTGACTGGGATGCTTGGAGTTCTATGCTTCAGTCTGCTAAACTTGGTGTTGAAAAGGATTTTAGTATTTGGAATCTGTCCGACTGTCATGTTCTAGGATGCAAACTGCATTGCAGTGCATCTGACCCTTCCAAGAAAAAGCTCTTTGAGCTCCATGAAATTTTTA</genome_strand>
        <mrna_strand>TGACAGTTTCGAAACCCTAACTTCTCCATGAATTCTTAGCTCCGAAGCTTCAAATTCAGCGATGGAGGGTGATTATTCAATCCCAGACCACAAGCTATGTGGTTTCTTTCTTACAGCCGTTGAAATTTCGTCTCCGCCGCACTCCTCCGAGCTCCATAGCACCCTCCCTTTAAATTCACAGTGCTACATCGCCGGAGACGGTTCTAATATCCACTTTGTAACGGATAACGACGTTGAATTGTGTCCCATTGGTTCTCATACGGAAGAGGACCGGAATGATGTTGTTCCGATGAAGAAGCGGAGCAGAATTGGAATGGTGAATGGTAGTATAAGCGTGGTGCATCAGTTGCACAAACTTGTAATGCAAAAATGCTTGAAGATTGTTGCTAGGGTTCTTGAGGTTGTGGAGCGTGGCCATGATGAAGAAGTTAGGGCTGTTGTTCTTGTGGATGTGTACTTGCCTTTAGCTTTGTGGTCCGGTTGGCAGTTCCCCAAGTCTGGCCCTGTTGCTGCAGCACTTTTCCGGCATATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGACTGGGATGCTTGGAGTTCTATGCTTCAGTCTGCTAAACTTGGTGTTGAAAAGGATTTTAGTATTTGGAATCTGTCCGACTGTCATGTTCTAGGATGCAAACTGCATTGCAGTGCATCTGACCCTTNNCAAGAAAAGCTCTTTGAGCTCCATGAAATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550631" ref_strand="+" ref_description="SGN-E550631 [TUS-11-J5]">
      <seq>tggtgttggacttcattagcggacaccaactaattggggattgaacagggaaaatacccttcgatttgatcaagttttctggtgaggggtgccttcttctttttgtggattgttgcctcaatatctatattattatctttgcgttgagtgtttaacttggcatgaaaagaaatgtacttatcaaggagaaatcttcaagatttgctttgttattgttctatcaagtaccaaaacttatgactcttttgcaacactgacttaatatgtgtatatagtaaatactaaaactgtaatatgtgttaactcggtgcttatatttctgttaatgtttgatatgtctacactcttttcatattgttatgaccttgaaaaagatcatcttacagctttctctagaacctgtattcattttctcctaaaagctcaaaagacaatcatagggcagcaatcactcttaattcagtatgaaaaaagtcttgaaaacctcaaaaagtagcactttctgtatgcgtgttgagtagtgatttgtatcttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="118517" stop="119657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118817" g_stop="119357" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E550631" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118817" e_stop="119357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCTGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</genome_strand>
        <mrna_strand>TGGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGAGGGGTGCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCGGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688269" ref_strand="+" ref_description="SGN-E688269 [t3_tus_11_j05]">
      <seq>tggtgttggacttcattagcggacaccaactaattggggattgaacagggaaaatacccttcgatttgatcaagttttctggtgaggggtgccttcttctttttgtggattgttgcctcaatatctatattattatctttgcgttgagtgtttaacttggcatgaaaagaaatgtacttatcaaggagaaatcttcaagatttgctttgttattgttctatcaagtaccaaaacttatgactcttttgcaacactgacttaatatgtgtatatagtaaatactaaaactgtaatatgtgttaactcggtgcttatatttctgttaatgtttgatatgtctacactcttttcatattgttatgaccttgaaaaagatcatcttacagctttctctagaacctgtattcattttctcctaaaagctcaaaagacaatcatagggcagcaatcactcttaattcagtatgaaaaaagtcttgaaaacctcaaaaagtagcactttctgtatgcgtgttgagtagtgatttgtatcttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="118517" stop="119657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118817" g_stop="119357" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E688269" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118817" e_stop="119357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCTGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</genome_strand>
        <mrna_strand>TGGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGAGGGGTGCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCGGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271608" ref_strand="+" ref_description="SGN-E271608 [cLEM-23-J16]">
      <seq>ggtgttggacttcattagcggacaccaactaattggggattgaacagggaaaatacccttcgatttgatcaagttttctggtgatcatttccttcttctttttgtggattgttgcctcaatatctatattattatctttgcgttgagtgtttaacttggcatgaaaagaaatgtacttatcaaggagaaatcttcaagatttgctttgttattgttctatcaagtaccaaaacttatgactcttttgcaacactgacttaatatgtgtatatagtaaatactaaaactgtaatatgtgttaactctgtgcttatatttctgttaatgtttgatatgtctacactcttttcatattgttatgaccttgaaaaagatcatcttacagctttctctagaacctgtattcattttctcctaaaagctcaaaagacaatcatagggcagcaatcactcttaattcagtatgaaaaaagtcttgaaaacctcaaaaagtagcactttctgtatgcgtgttgagtagtgatttgtatcttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="118518" stop="119657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118818" g_stop="119357" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E271608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118818" e_stop="119357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCTGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</genome_strand>
        <mrna_strand>GGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCTGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332480" ref_strand="+" ref_description="SGN-E332480 [cTOD-17-D22]">
      <seq>atctctcaacaatttctatcatatatcatatttttattttattttcaggattgattgctttctatcgctcaccttcgtatcattctccttaatattatatcttttggttttgtaggccacttacaatctttttttctttttagtttatgttcgttttatgagagattttcatttctacacatacgagatttgaaaagactaggtggtcaaaaaatcttcatatttctacgcatacaaaagatctgaaaagaccatatggtcaaaatatcataatttcaacctatacgagatttgaatataccaagtggtcaagagatgttcatttctacccatacgagatcggcggtcaagatatcttaattccctattggtataatattgttaatagtaaagagagaatttttattttatgatggatcatcacagggacaatgaatttgaatatcaagaaatcgagaaaacaaagacatcatcaaaattcaatagatcaaggactatacacagcccgagaaactcgattgaattccccgaaaagcccttgtatctctacccttctcctcattccatcgaacgtaatggctccattaaaaagcttcattgctcacctttaggatccatggttggaaaagtgaaaaagctgtattcaattttcgattctcgtaaagaaatcctcgatcctcgattccaaaactcaaagcagcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="121528" stop="122835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121828" g_stop="122535" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E332480" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121828" e_stop="122535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCAACAATTTCTATCATATATCATATTTTTATTTTATTTTCAGGATTGATTGCTTTCTATCGCTCACCTTCGTATCATTCTCCTTAATATTATATCTTTTGGTTTTGTAGGCCACTTACAATCTTTTTTTCTTTTTAGTTTATGTTCGTTTTATGAGAGATTTTCATTTCTACACATACGAGATTTGAAAAGACTAGGTGGTCAAAAAATCTTCATATTTCTACGCATACAAAAGATCTGAAAAGACCATATGGTCAAAATATCATAATTTCAACCTATACGAGATTTGAATATACCAAGTGGTCAAGAGATGTTCATTTCTACCCATACGAGATCGGCGGTCAAGATATCTTAATTCCCTATTGGTATAATATTGTTAATAGTAAAGAGAGAATTTTTATTTTATGATGGATCATCACAGGGACAATGAATTTGAATATCAAGAAATCGAGAAAACAAAGACATCATCAAAATTCAATAGATCAAGGACTATACACAGCCCGAGAAACTCGATTGAATTCCCCGAAAAGCCCTTGTATCTCTACCCTTCTCCTCATTCCATCGAACGTAATGGCTCCATTAAAAAGCTTCATTGCTCACCTTTAGGATCCATGGTTGGAAAAGTGAAAAAGCTGTATTCAATTTTCGATTCTCGTAAAGAAAATCCTCGATCCTCGATTCCAAAACCTCAAAGCAAGCATTC</genome_strand>
        <mrna_strand>ATCTCTCAACAATTTCTATCATATATCATATTTTTATTTTATTTTCAGGATTGATTGCTTTCTATCGCTCACCTTCGTATCATTCTCCTTAATATTATATCTTTTGGTTTTGTAGGCCACTTACAATCTTTTTTTCTTTTTAGTTTATGTTCGTTTTATGAGAGATTTTCATTTCTACACATACGAGATTTGAAAAGACTAGGTGGTCAAAAAATCTTCATATTTCTACGCATACAAAAGATCTGAAAAGACCATATGGTCAAAATATCATAATTTCAACCTATACGAGATTTGAATATACCAAGTGGTCAAGAGATGTTCATTTCTACCCATACGAGATCGGCGGTCAAGATATCTTAATTCCCTATTGGTATAATATTGTTAATAGTAAAGAGAGAATTTTTATTTTATGATGGATCATCACAGGGACAATGAATTTGAATATCAAGAAATCGAGAAAACAAAGACATCATCAAAATTCAATAGATCAAGGACTATACACAGCCCGAGAAACTCGATTGAATTCCCCGAAAAGCCCTTGTATCTCTACCCTTCTCCTCATTCCATCGAACGTAATGGCTCCATTAAAAAGCTTCATTGCTCACCTTTAGGATCCATGGTTGGAAAAGTGAAAAAGCTGTATTCAATTTTCGATTCTCGTAAAG-AAATCCTCGATCCTCGATTCCAAAA-CTCAAAGC-AGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378017" ref_strand="+" ref_description="SGN-E378017 [TUS-20-P16]">
      <seq>tgcatttaagtgctctagcttaatattggctgatccatcatcaaatcatacaagtaacaacaactcttcttccacaaaattagtcaatagagggatcaagaaaaaagcgctcaagacatttccagttataacatatagtactactgaaccaaaacatccggggctcgactctgaatgtgtcatttgcttatcagagtttggagttggagacaaaatcaaagtgctacctaagtgcaaccatgggttccatgttcgatgtattgataaatggctcaattcacactcttcttgccctacttgtaggcactccctcattgacacttgcgaaaaaattgttaatggtggcaattcttctactactaataataatattagagaggcagcagtacaacaagttatagtaaggattgaacctctccaacgtgaaggtgtgatatccaattaatttacaatcaaaatttggtacaaaaaaatagtaatatagctagattttcctttagtaaatctcttctttttccgagctctgattatgaaagaaggaacctagaagaagaatgtatcacacatactcaattaggttagaagcttagagagctagcatgtagtttccaatgagttatcaagtgtatatacaagttaaggtgtatattttccctaaagtttaaagttatggtataagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="126008" stop="127288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126308" g_stop="126988" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E378017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126308" e_stop="126988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTATCAAGTGTATATACAAGTTAAGGTGTATATTTTCCCTAAAGTTTAAAGTTATGGTATAAGTT</genome_strand>
        <mrna_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTATCAAGTGTATATACAAGTTAAGGTGTATATTTTCCCTAAAGTTTAAAGTTATGGTATAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240364" ref_strand="+" ref_description="SGN-E240364 [cLED-25-K22]">
      <seq>tgcatttaagtgctctagcttaatattggctgatccatcatcaaatcatacaagtaacaacaactcttcttccacaaaattagtcaatagagggatcaagaaaaaagcgctcaagacatttccagttataacatatagtactactgaaccaaaacatccggggctcgactctgaatgtgtcatttgcttatcagagtttggagttggagacaaaatcaaagtgctacctaagtgcaaccatgggttccatgttcgatgtattgataaatggctcaattcacactcttcttgccctacttgtaggcactccctcattgacacttgcgaaaaaattgttaatggtggcaattcttctactactaataataatattagagaggcagcagtacaacaagttatagtaaggattgaacctctccaacgtgaaggtgtgatatccaattaatttacaatcaaaatttggtacaaaaaaatagtaatatagctagattttcctttagtaaatctcttctttttccgagctctgattatgaaagaaggaacctagaagaagaatgtatcacacatactcaattaggttagaagcttagagagctagcatgtagtttccaatgagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="126008" stop="127227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126308" g_stop="126927" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E240364" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126308" e_stop="126927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTAT</genome_strand>
        <mrna_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231818" ref_strand="+" ref_description="SGN-E231818 [cLED-7-K21]">
      <seq>tgcatttaagtgctctagcttaatattggctgatccatcatcaaatcatacaagtaacaacaactcttcttccacaaaattagtcaatagagggatcaagaaaaaagcgctcaagacatttccagttataacatatagtactactgaaccaaaacatccggggctcgactctgaatgtgtcatttgcttatcagagtttggagttggagacaaaatcaaagtgctacctaagtgcaaccatgggttccatgttcgatgtattgataaatggctcaattcacactcttcttgccctacttgtaggcactccctcattgacacttgcgaaaaaattgttaatggtggcaattcttctactactaataataatattagagaggcagcagtacaacaagttatagtaaggattgaacctctccaacgtgaaggtgtgatatccaattaatttacaatcaaaatttggtacaaaaaaatagtaatatagctagattttcctttagtaaatctcttctttttccgagctctgattatgaaagaaggaacctagaagaagaatgtatcacacatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="126008" stop="127178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126308" g_stop="126878" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E231818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126308" e_stop="126878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTC</genome_strand>
        <mrna_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242401" ref_strand="+" ref_description="SGN-E242401 [cLED-30-O1]">
      <seq>tgcatttaagtgctctagcttaatattggctgatccatcatcaaatcatacaagtaacaacaactcttcttccacaaaattagtcaatagagggatcaagaaaaaagcgctcaagacatttccagttataacatatagtactactgaaccaaaacatccggggctcgactctgaatgtgtcatttgcttatcagagtttggagttggagacaaaatcaaagtgctacctaagtgcaaccatgggttccatgttcgatgtattgataaatggctcaattcacactcttcttgccctacttgtaggcactccctcattgacacttgcgaaaaaattgttaatggtggcaattcttctactactaataataatattagagaggcagcagtacaacaagttatagtaaggattgaacctctccaacgtgaaggtgtgatatccaattaatttacaatcaaaatttggtacaaaaaaatagtaatatagctagattttcctttagtaaatctcttctttttccgagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="126008" stop="127132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126308" g_stop="126832" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E242401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126308" e_stop="126832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCT</genome_strand>
        <mrna_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240945" ref_strand="+" ref_description="SGN-E240945 [cLED-24-I18]">
      <seq>tgcatttaagtgctctagcttaatattggctgatccatcatcaaatcatacaagtaacaacaactcttcttccacaaaattagtcaatagagggatcaagaaaaaagcgctcaagacatttccagttataacatatagtactactgaaccaaaacatccggggctcgactctgaatgtgtcatttgcttatcagagtttggagttggagacaaaatcaaagtgctacctaagtgcaaccatgggttccatgttcgatgtattgataaatggctcaattcacactcttcttgccctacttgtaggcactccctcattgacacttgcgaaaaaattgttaatggtggcaattcttctactactaataataatattagagaggcagcagtacaacaagttatagtaaggattgaacctctccaacgtgaaggtgtgatatccaattaatttacaatcaaaatttggtacaaaaaaatagtaatatagctagattttcctttagtaaatctcttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="126008" stop="127122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126308" g_stop="126822" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E240945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126308" e_stop="126822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTT</genome_strand>
        <mrna_strand>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378016" ref_strand="+" ref_description="SGN-E378016 [TUS-20-P16](-)">
      <seq>actactaataataatattagagaggcagcagtacaacaagttatagtaaggattgaacctctccaacgtgaaggtgtgatatccaattaatttacaatcaaaatttggtacaaaaaaatagtaatatagctagattttcctttagtaaatctcttctttttccgagctctgattatgaaagaaggaacctagaagaagaatgtatcacacatactcaattaggttagaagcttagagagctagcatgtagtttccaatgagttatcaagtgtatatacaagttaaggtgtatattttccctaaagtttaaagttatggtataagttcctatcttagggtaaattggattttgtattttaaattaaattaagcgggacccgctaatcaatctaactttgaaattggaaaaaaaaatgggaataattgtagatgatgggttgatgattaggaataaagtgctatcaatttattttatttttataaaaggaataaagtagaatggtagatgttgaatattttatttttggatggttaaattttttatgaggttaaaagtgtatatttttatgaataacaagaattgtttttcaaaagataaaaaaggaaccttttccccgaaaggattttaaagaaatataagtacttaaaaacattttttgtattttgaaaatttattaattaaacgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0168B23-GU3i3/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C11HBa0168B23.2" temp_strand="+" temp_description="C11HBa0168B23.2  AC212438.2 htgs_phase:3 submitted_to_sgn_as:gi|166159196|gb|AC212438.2| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0168B23, complete sequence">
        <position start="126363" stop="127652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126663" g_stop="127358" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0168B23.2" gen_strand="+" ref_id="SGN-E378016" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0168B23.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126663" e_stop="127358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTATCAAGTGTATATACAAGTTAAGGTGTATATTTTCCCTAAAGTTTAAAGTTATGGTATAAGTTCCTATCTTAGGGTAAATTGGATTTTGTATTTTAAATTAAATTAAGCGGGACCCGCTAATCAATCTAACTTTGAAATTGGAAAAAAAAATGGGAATAATTGTAGATGATGGGTTGATGATTAGGAATAAAGTGCTATCAATTTATTTTATTTTTATAAAAGGAATAAAGTAGAATGGTAGATGTTGAATATTTTATTTTTGGATGGTTAAATTTTTTATGAGGTTAAAAGTGTATATTTTTATGAATAACAAGAATTGTTTTTCAAAAGATAAAAAAGGAACCTTTTCCCCGAAAGGATTTTAAAGAAATATAAGTACTTAAAAACATTTTTTGTATTTTGAAAATTTATTAATTAAACGCAAAATTATTT</genome_strand>
        <mrna_strand>ACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTATCAAGTGTATATACAAGTTAAGGTGTATATTTTCCCTAAAGTTTAAAGTTATGGTATAAGTTCCTATCTTAGGGTAAATTGGATTTTGTATTTTAAATTAAATTAAGCGGGACCCGCTAATCAATCTAACTTTGAAATTGGAAAAAAAAATGGGAATAATTGTAGATGATGGGTTGATGATTAGGAATAAAGTGCTATCAATTTATTTTATTTTTATAAAAGGAATAAAGTAGAATGGTAGATGTTGAATATTTTATTTTTGGATGGTTAAATTTTTTATGAGGTTAAAAGTGTATATTTTTATGAATAACAAGAATTGTTTTTCAAAAGATAAAAAAGGAACCTTTTCCCCGAAAGGATTTTAAAGAAATATAAGTACTTAAAAACATTTTTTGTATTTTGAAAATTTATTAATTAAACGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>87</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8635" PGL_stop="6066"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8635" e_stop="8613"/>
            <exon e_start="8346" e_stop="8131"/>
            <exon e_start="7700" e_stop="7634"/>
            <exon e_start="7542" e_stop="7378"/>
            <exon e_start="7261" e_stop="7220"/>
            <exon e_start="7139" e_stop="7098"/>
            <exon e_start="6816" e_stop="6609"/>
            <exon e_start="6322" e_stop="6066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8635" e_stop="8613" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="8612" i_stop="8347" i_length="266"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8346" e_stop="8131" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.978">
            <gDNA_intron_boundary i_start="8130" i_stop="7701" i_length="430"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7700" e_stop="7634" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="7633" i_stop="7543" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7542" e_stop="7378" e_length="165"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7377" i_stop="7262" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7261" e_stop="7220" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="7219" i_stop="7140" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7139" e_stop="7098" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.925">
            <gDNA_intron_boundary i_start="7097" i_stop="6817" i_length="281"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6816" e_stop="6609" e_length="208"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6608" i_stop="6323" i_length="286"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="6322" e_stop="6066" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8635" stop="8613"/>
              <exon start="8346" stop="8131"/>
              <exon start="7700" stop="7634"/>
              <exon start="7542" stop="7378"/>
              <exon start="7261" stop="7220"/>
              <exon start="7139" stop="7098"/>
              <exon start="6816" stop="6769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8634" stop="8613"/>
              <exon start="8346" stop="8131"/>
              <exon start="7700" stop="7634"/>
              <exon start="7542" stop="7422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7657" stop="7634"/>
              <exon start="7542" stop="7378"/>
              <exon start="7261" stop="7220"/>
              <exon start="7139" stop="7098"/>
              <exon start="6816" stop="6609"/>
              <exon start="6322" stop="6255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7251" stop="7220"/>
              <exon start="7139" stop="7098"/>
              <exon start="6816" stop="6609"/>
              <exon start="6322" stop="6066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395121" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACACAAGAAGAAGAACAAAG : GTGATAACAATAATAATAAATAAATATAATGGGGAGAGGAAAGATAGAAGTGAAGAGAATTGAGAACAAAACAAGTAGACAAGTTACTTTCTCAAAGAGAAGAGCTGGACTTTTGAAGAAAACACATGAACTTTCTGTTCTTTGTGATGCTCAAATTGGACTCATCATTTTCTCAACCAAAGGCAAATTGTTTGAGTACACCACTCAACCTCACAG : CATGGGTGAAATCATTAATAAGTATCTCCAAACTACTGGTGCCTCACTTCCAATTCATGATCATAGG : GTGGAACAATATGATGAAATAACAAAAATGAAAAGAGAAACATTGAATCTTGAATTAAGTCTTCAAAGATACAAAGGTGATGAATTGAACTCAGCACAATATGATGAATTAAATGAACTTGAGAAGCAGCTTGAAAATTCTATTAACAAAATTAGAGCCAGAAAG : CTTGAACTCTTGCAACAGCAGATGGAAAACCTGAAGAGAACA : GAGAAAATGTTGGAGAAAGAAAATCATGATATGTGTCAGTGG : TTGATGAAGTATGAAATGTACAAGCAACAGCCAGTAGCAATGATGGAGCAACAAGAAGAAGCAGCAATTACTGAACTGAATTTACTTGGAGAACAACCATTGTTGTCTCAATTTTCATTCTTTGGAGATCAACACCAACTTGGTACTACAAGTAATTCTTCAGCATATCACCTTCAAACTTCTCACCCTTTTACTCCCTCTACCTACG : ATTGATGAGGAGGAGCTGCAATTGCTGGGGATAATTAATTCTACATTTCCTTTGGCATATTTAGAAGCTATATATAGAAAGCATGTAAACTTTAATTATATGCATCTTAAGGATCTATTGATTGTAACTAATTAAGGATGTCTAGTATTGGTACAATGAAGTTTTACTATAATTCATATGTGATGTATAAGAAATTTGTTTGGGTCATTTTAATTTGATGGATTTATAATTATAAAATTTTAGACTTGATTAAGATG</gDNA_template>
            <first_frame> K  T  Q  E  E  E  Q  R :   *  *  Q  *  *  *  I  N  I  M  G  R  G  K  I  E  V  K  R  I  E  N  K  T  S  R  Q  V  T  F  S  K  R  R  A  G  L  L  K  K  T  H  E  L  S  V  L  C  D  A  Q  I  G  L  I  I  F  S  T  K  G  K  L  F  E  Y  T  T  Q  P  H  S :   M  G  E  I  I  N  K  Y  L  Q  T  T  G  A  S  L  P  I  H  D  H  R  :  V  E  Q  Y  D  E  I  T  K  M  K  R  E  T  L  N  L  E  L  S  L  Q  R  Y  K  G  D  E  L  N  S  A  Q  Y  D  E  L  N  E  L  E  K  Q  L  E  N  S  I  N  K  I  R  A  R  K  :  L  E  L  L  Q  Q  Q  M  E  N  L  K  R  T  :  E  K  M  L  E  K  E  N  H  D  M  C  Q  W  :  L  M  K  Y  E  M  Y  K  Q  Q  P  V  A  M  M  E  Q  Q  E  E  A  A  I  T  E  L  N  L  L  G  E  Q  P  L  L  S  Q  F  S  F  F  G  D  Q  H  Q  L  G  T  T  S  N  S  S  A  Y  H  L  Q  T  S  H  P  F  T  P  S  T  Y   : D  *  *  G  G  A  A  I  A  G  D  N  *  F  Y  I  S  F  G  I  F  R  S  Y  I  *  K  A  C  K  L  *  L  Y  A  S  *  G  S  I  D  C  N  *  L  R  M  S  S  I  G  T  M  K  F  Y  Y  N  S  Y  V  M  Y  K  K  F  V  W  V  I  L  I  *  W  I  Y  N  Y  K  I  L  D  L  I  K  M </first_frame>
            <second_frame>  K  H  K  K  K  N  K   : G  D  N  N  N  N  K  *  I  *  W  G  E  E  R  *  K  *  R  E  L  R  T  K  Q  V  D  K  L  L  S  Q  R  E  E  L  D  F  *  R  K  H  M  N  F  L  F  F  V  M  L  K  L  D  S  S  F  S  Q  P  K  A  N  C  L  S  T  P  L  N  L  T   : A  W  V  K  S  L  I  S  I  S  K  L  L  V  P  H  F  Q  F  M  I  I  G :   W  N  N  M  M  K  *  Q  K  *  K  E  K  H  *  I  L  N  *  V  F  K  D  T  K  V  M  N  *  T  Q  H  N  M  M  N  *  M  N  L  R  S  S  L  K  I  L  L  T  K  L  E  P  E  S :   L  N  S  C  N  S  R  W  K  T  *  R  E  Q :   R  K  C  W  R  K  K  I  M  I  C  V  S  G :   *  *  S  M  K  C  T  S  N  S  Q  *  Q  *  W  S  N  K  K  K  Q  Q  L  L  N  *  I  Y  L  E  N  N  H  C  C  L  N  F  H  S  L  E  I  N  T  N  L  V  L  Q  V  I  L  Q  H  I  T  F  K  L  L  T  L  L  L  P  L  P  T  :  I  D  E  E  E  L  Q  L  L  G  I  I  N  S  T  F  P  L  A  Y  L  E  A  I  Y  R  K  H  V  N  F  N  Y  M  H  L  K  D  L  L  I  V  T  N  *  G  C  L  V  L  V  Q  *  S  F  T  I  I  H  M  *  C  I  R  N  L  F  G  S  F  *  F  D  G  F  I  I  I  K  F  *  T  *  L  R   </second_frame>
            <third_frame>   N  T  R  R  R  T  K  :  V  I  T  I  I  I  N  K  Y  N  G  E  R  K  D  R  S  E  E  N  *  E  Q  N  K  *  T  S  Y  F  L  K  E  K  S  W  T  F  E  E  N  T  *  T  F  C  S  L  *  C  S  N  W  T  H  H  F  L  N  Q  R  Q  I  V  *  V  H  H  S  T  S  Q  :  H  G  *  N  H  *  *  V  S  P  N  Y  W  C  L  T  S  N  S  *  S  *   : G  G  T  I  *  *  N  N  K  N  E  K  R  N  I  E  S  *  I  K  S  S  K  I  Q  R  *  *  I  E  L  S  T  I  *  *  I  K  *  T  *  E  A  A  *  K  F  Y  *  Q  N  *  S  Q  K   : A  *  T  L  A  T  A  D  G  K  P  E  E  N   : R  E  N  V  G  E  R  K  S  *  Y  V  S  V   : V  D  E  V  *  N  V  Q  A  T  A  S  S  N  D  G  A  T  R  R  S  S  N  Y  *  T  E  F  T  W  R  T  T  I  V  V  S  I  F  I  L  W  R  S  T  P  T  W  Y  Y  K  *  F  F  S  I  S  P  S  N  F  S  P  F  Y  S  L  Y  L  R :   L  M  R  R  S  C  N  C  W  G  *  L  I  L  H  F  L  W  H  I  *  K  L  Y  I  E  S  M  *  T  L  I  I  C  I  L  R  I  Y  *  L  *  L  I  K  D  V  *  Y  W  Y  N  E  V  L  L  *  F  I  C  D  V  *  E  I  C  L  G  H  F  N  L  M  D  L  *  L  *  N  F  R  L  D  *  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8327" stop="8131"/>
                    <exon start="7700" stop="7634"/>
                    <exon start="7542" stop="7378"/>
                    <exon start="7261" stop="7220"/>
                    <exon start="7139" stop="7098"/>
                    <exon start="6816" stop="6609"/>
                    <exon start="6322" stop="6318"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INIMGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSTKGKLFEYTTQPHSMGEIINKYLQTTGASLPIHDHRVEQYDEITKMKRETLNLELSLQRYKGDELNSAQYDELNELEKQLENSINKIRARKLELLQQQMENLKRTEKMLEKENHDMCQWLMKYEMYKQQPVAMMEQQEEAAITELNLLGEQPLLSQFSFFGDQHQLGTTSNSSAYHLQTSHPFTPSTYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12974" PGL_stop="12213"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12974" e_stop="12213"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="12974" e_stop="12213" e_length="762"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12974" stop="12213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12964" stop="12758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12885" stop="12290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12845" stop="12213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12547" stop="12298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230789" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTAGGAGGAACAAATTATTGGCCACAAAGGAAGGGGATACTAGTAGAGTAGATGCTGGACCTATTGCCCAGTCGGTGCATATCCAAGAAAAGATTGTAGTTGATCATTCTTCAACTTCAACAAACAAGCCAGTATACAGTAGTGCAGCTGTAAATGCTTCTGCACGAGTGCATGTTTCCATAGCTAATGGTTCTGATGTGAATCGTCTAAAGCAGGAGAAGCTAAAGGGAGTTTCTGGCAGCTCTGTTGATCCACGAGGAGCAGATGCGGTGCCAAAAAAGAAAGTGAAGAGGAAACATGAGTCAGAATTGGGTGAAAGTTTGTTTCACAGCGAGAAATTGACTTCCACACAGGCAGAGGAGAAGAACAAAACCAACAAGCATACTGGTTGTCCTACTCCAAAACCAAATAATGTTTCGACCTCCGGCTTTGAACAGCTGACATGATGCAATTTCTGCCTCTTGCATTGCCCCTGTTTTCTAGTTCTGTAATTATATATAGTTATCTTGGCGCGTTACCCATAAGAAACCTGAGTCTCGTATTTTTGAAGTCACAGCTGAAAGGCACATTTAGTTAAGGCAAAACATTAGAAAATTGATGTCTTATTGGCAGCTAGGGTCTCTGCTGTTGGGCATTTTGATGCTAGTTTTATTTATGGACTGGAAATTGCTCTCTTCCTTGGTTCATTCTGTTACCAGCTAAAATTCGGTCGTCATCGAACTTTTTAGTATTTTTCTGGGTTGGATAAATGCAGGATT</gDNA_template>
            <first_frame> K  I  R  R  N  K  L  L  A  T  K  E  G  D  T  S  R  V  D  A  G  P  I  A  Q  S  V  H  I  Q  E  K  I  V  V  D  H  S  S  T  S  T  N  K  P  V  Y  S  S  A  A  V  N  A  S  A  R  V  H  V  S  I  A  N  G  S  D  V  N  R  L  K  Q  E  K  L  K  G  V  S  G  S  S  V  D  P  R  G  A  D  A  V  P  K  K  K  V  K  R  K  H  E  S  E  L  G  E  S  L  F  H  S  E  K  L  T  S  T  Q  A  E  E  K  N  K  T  N  K  H  T  G  C  P  T  P  K  P  N  N  V  S  T  S  G  F  E  Q  L  T  *  C  N  F  C  L  L  H  C  P  C  F  L  V  L  *  L  Y  I  V  I  L  A  R  Y  P  *  E  T  *  V  S  Y  F  *  S  H  S  *  K  A  H  L  V  K  A  K  H  *  K  I  D  V  L  L  A  A  R  V  S  A  V  G  H  F  D  A  S  F  I  Y  G  L  E  I  A  L  F  L  G  S  F  C  Y  Q  L  K  F  G  R  H  R  T  F  *  Y  F  S  G  L  D  K  C  R  I </first_frame>
            <second_frame>  K  L  G  G  T  N  Y  W  P  Q  R  K  G  I  L  V  E  *  M  L  D  L  L  P  S  R  C  I  S  K  K  R  L  *  L  I  I  L  Q  L  Q  Q  T  S  Q  Y  T  V  V  Q  L  *  M  L  L  H  E  C  M  F  P  *  L  M  V  L  M  *  I  V  *  S  R  R  S  *  R  E  F  L  A  A  L  L  I  H  E  E  Q  M  R  C  Q  K  R  K  *  R  G  N  M  S  Q  N  W  V  K  V  C  F  T  A  R  N  *  L  P  H  R  Q  R  R  R  T  K  P  T  S  I  L  V  V  L  L  Q  N  Q  I  M  F  R  P  P  A  L  N  S  *  H  D  A  I  S  A  S  C  I  A  P  V  F  *  F  C  N  Y  I  *  L  S  W  R  V  T  H  K  K  P  E  S  R  I  F  E  V  T  A  E  R  H  I  *  L  R  Q  N  I  R  K  L  M  S  Y  W  Q  L  G  S  L  L  L  G  I  L  M  L  V  L  F  M  D  W  K  L  L  S  S  L  V  H  S  V  T  S  *  N  S  V  V  I  E  L  F  S  I  F  L  G  W  I  N  A  G   </second_frame>
            <third_frame>   N  *  E  E  Q  I  I  G  H  K  G  R  G  Y  *  *  S  R  C  W  T  Y  C  P  V  G  A  Y  P  R  K  D  C  S  *  S  F  F  N  F  N  K  Q  A  S  I  Q  *  C  S  C  K  C  F  C  T  S  A  C  F  H  S  *  W  F  *  C  E  S  S  K  A  G  E  A  K  G  S  F  W  Q  L  C  *  S  T  R  S  R  C  G  A  K  K  E  S  E  E  E  T  *  V  R  I  G  *  K  F  V  S  Q  R  E  I  D  F  H  T  G  R  G  E  E  Q  N  Q  Q  A  Y  W  L  S  Y  S  K  T  K  *  C  F  D  L  R  L  *  T  A  D  M  M  Q  F  L  P  L  A  L  P  L  F  S  S  S  V  I  I  Y  S  Y  L  G  A  L  P  I  R  N  L  S  L  V  F  L  K  S  Q  L  K  G  T  F  S  *  G  K  T  L  E  N  *  C  L  I  G  S  *  G  L  C  C  W  A  F  *  C  *  F  Y  L  W  T  G  N  C  S  L  P  W  F  I  L  L  P  A  K  I  R  S  S  S  N  F  L  V  F  F  W  V  G  *  M  Q  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12974" stop="12525"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIRRNKLLATKEGDTSRVDAGPIAQSVHIQEKIVVDHSSTSTNKPVYSSAAVNASARVHVSIANGSDVNRLKQEKLKGVSGSSVDPRGADAVPKKKVKRKHESELGESLFHSEKLTSTQAEEKNKTNKHTGCPTPKPNNVSTSGFEQLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="18741" PGL_stop="16159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18741" e_stop="18402"/>
            <exon e_start="16731" e_stop="16632"/>
            <exon e_start="16465" e_stop="16356"/>
            <exon e_start="16245" e_stop="16159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.923" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="18741" e_stop="18402" e_length="340"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18401" i_stop="16732" i_length="1670"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16731" e_stop="16632" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="16631" i_stop="16466" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16465" e_stop="16356" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.923">
            <gDNA_intron_boundary i_start="16355" i_stop="16246" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="16245" e_stop="16159" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18741" stop="18402"/>
              <exon start="16731" stop="16632"/>
              <exon start="16465" stop="16356"/>
              <exon start="16245" stop="16159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265463" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGAAATACCAACAACAAAGAAAGCTGCAGATACCCAAGATATGTCGGAGCTATCTCCATCAGCATCATTGCGTGGCAATTCTGCAGAAGAAAAAGACCTTGACCAGCAGAAAATTGGAGTCACCCAATCCAAGAATCTAGGTGACAAATTAAAAGATGGTTCTGAAATATCTGGAAAATCATCTCAGAGGTTACATGACAGAAGTTCTTATGCTCAAGAGAAATCTAATGTTGGAAGATCAGTAAATATTTCTGACGGAATAGACCAGTCTGTTCAGCGCCGTGATGAGAAGTTTAATGTCAGTGGCTTTGAGGGAAAGAACTCAGGTCAGACTATG : AAAGATCCTGCTATGCAGAGAAAGGAAGGATCGAGTGGTAGACCAAAAGGTACAATGCTTGAGAAGGCCATCAGGGATTTGGAGAAGATCGTTGCAGAAT : TAAGGCCACCAAATATGGAGGTTCAGGATGCTGATAATTCATCTCAGGCTATCAAAAGGAGGTTACCACTTGAAATAAAGCAGAGGCTGGCAAAAGTTGCCCGACTGGCG : CAAGCTAGTCATGGAAAAATATCCAATGAGTTAATTAGTCGTTTAATGAGTATTGTCGGCCACTTGATACAGCTTCGCACATTGAAG</gDNA_template>
            <first_frame> F  *  N  T  N  N  K  E  S  C  R  Y  P  R  Y  V  G  A  I  S  I  S  I  I  A  W  Q  F  C  R  R  K  R  P  *  P  A  E  N  W  S  H  P  I  Q  E  S  R  *  Q  I  K  R  W  F  *  N  I  W  K  I  I  S  E  V  T  *  Q  K  F  L  C  S  R  E  I  *  C  W  K  I  S  K  Y  F  *  R  N  R  P  V  C  S  A  P  *  *  E  V  *  C  Q  W  L  *  G  K  E  L  R  S  D  Y   : E  R  S  C  Y  A  E  K  G  R  I  E  W  *  T  K  R  Y  N  A  *  E  G  H  Q  G  F  G  E  D  R  C  R  I :   K  A  T  K  Y  G  G  S  G  C  *  *  F  I  S  G  Y  Q  K  E  V  T  T  *  N  K  A  E  A  G  K  S  C  P  T  G   : A  S  *  S  W  K  N  I  Q  *  V  N  *  S  F  N  E  Y  C  R  P  L  D  T  A  S  H  I  E  </first_frame>
            <second_frame>  S  E  I  P  T  T  K  K  A  A  D  T  Q  D  M  S  E  L  S  P  S  A  S  L  R  G  N  S  A  E  E  K  D  L  D  Q  Q  K  I  G  V  T  Q  S  K  N  L  G  D  K  L  K  D  G  S  E  I  S  G  K  S  S  Q  R  L  H  D  R  S  S  Y  A  Q  E  K  S  N  V  G  R  S  V  N  I  S  D  G  I  D  Q  S  V  Q  R  R  D  E  K  F  N  V  S  G  F  E  G  K  N  S  G  Q  T  M  :  K  D  P  A  M  Q  R  K  E  G  S  S  G  R  P  K  G  T  M  L  E  K  A  I  R  D  L  E  K  I  V  A  E   : L  R  P  P  N  M  E  V  Q  D  A  D  N  S  S  Q  A  I  K  R  R  L  P  L  E  I  K  Q  R  L  A  K  V  A  R  L  A  :  Q  A  S  H  G  K  I  S  N  E  L  I  S  R  L  M  S  I  V  G  H  L  I  Q  L  R  T  L  K </second_frame>
            <third_frame>   L  K  Y  Q  Q  Q  R  K  L  Q  I  P  K  I  C  R  S  Y  L  H  Q  H  H  C  V  A  I  L  Q  K  K  K  T  L  T  S  R  K  L  E  S  P  N  P  R  I  *  V  T  N  *  K  M  V  L  K  Y  L  E  N  H  L  R  G  Y  M  T  E  V  L  M  L  K  R  N  L  M  L  E  D  Q  *  I  F  L  T  E  *  T  S  L  F  S  A  V  M  R  S  L  M  S  V  A  L  R  E  R  T  Q  V  R  L  * :   K  I  L  L  C  R  E  R  K  D  R  V  V  D  Q  K  V  Q  C  L  R  R  P  S  G  I  W  R  R  S  L  Q  N  :  *  G  H  Q  I  W  R  F  R  M  L  I  I  H  L  R  L  S  K  G  G  Y  H  L  K  *  S  R  G  W  Q  K  L  P  D  W  R :   K  L  V  M  E  K  Y  P  M  S  *  L  V  V  *  *  V  L  S  A  T  *  Y  S  F  A  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18740" stop="18402"/>
                    <exon start="16731" stop="16632"/>
                    <exon start="16465" stop="16356"/>
                    <exon start="16245" stop="16159"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEIPTTKKAADTQDMSELSPSASLRGNSAEEKDLDQQKIGVTQSKNLGDKLKDGSEISGKSSQRLHDRSSYAQEKSNVGRSVNISDGIDQSVQRRDEKFNVSGFEGKNSGQTMKDPAMQRKEGSSGRPKGTMLEKAIRDLEKIVAELRPPNMEVQDADNSSQAIKRRLPLEIKQRLAKVARLAQASHGKISNELISRLMSIVGHLIQLRTLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="26214" PGL_stop="18851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26214" e_stop="25814"/>
            <exon e_start="22040" e_stop="21954"/>
            <exon e_start="21875" e_stop="21783"/>
            <exon e_start="21622" e_stop="21546"/>
            <exon e_start="18966" e_stop="18851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.998"/>
          <exon-intron don_prob="0.917" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="26214" e_stop="25814" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25813" i_stop="22041" i_length="3773"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22040" e_stop="21954" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21953" i_stop="21876" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21875" e_stop="21783" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="21782" i_stop="21623" i_length="160"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21622" e_stop="21546" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="21545" i_stop="18967" i_length="2579"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="18966" e_stop="18851" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26214" stop="25814"/>
              <exon start="22040" stop="21954"/>
              <exon start="21875" stop="21871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26213" stop="25814"/>
              <exon start="22040" stop="21954"/>
              <exon start="21875" stop="21813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26179" stop="25814"/>
              <exon start="22040" stop="21954"/>
              <exon start="21875" stop="21783"/>
              <exon start="21622" stop="21546"/>
              <exon start="18966" stop="18851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578212" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAATTCTAAAATTTTCTCTTTTCAATTTGGTACCAAATTTTCCTCTTCTTTAGGGTTTCGAATCAGTGTTTCCCTCTCTTTTCCATGTCTTCATCTTCTAAATCTCATACATCGTAACCCTAATTTCGTTTACAATCACCAATGGACGGCGGCTTCACTGGTGGAGAACCGGTAGGGAGGGCGTCCACGTCCTATGAAGCTGCAGGAGGACGGCGGAGGTTTACGGTGGAGCTCAGGCCGGGTGAGACCACAATTGTGTCGTGGAAGAAGCTTCTCAAGGACGCTAATAAGTCTAATGTTAATGTTGTCGGTTCTGGTCCAACGATGATGCCGGTTGGAGCTCCTGCTAGCATTCAAACTCCAGTGCCGCATCCTGCTCTCGAGGCTCGATTAGCTCCG : GGACAACCTGCTGATAAGGAAGTCAAGGATGCACCTCCTGGAAATCGTTTAAATGCTGTGATAGAAAAGATTGAACGCTTATATGTG : GGCAAACAAAGTGATGATGAGGAAGATCTTAATGATTTCCCAGATGACGATGAATATGACACTGAAGATTCTTTCATAGATGATACTGAGCTG : GATGAATATTTTCAGGTTGATAACTCAGCAATAAAGCATGATGGTTTCTTTGTCAATCGTGGAAAGTTGGAGCGCAT : TGAGCCAGTTTCACCAAAGAATCAGCAACCAAAAAAGAGGAGAAGAAAAGATCTGGCAAAAAGCCATGTTGGGGATGATGATGGACACAATCCAAGTAAACCTGTAAAAGTCGGAA</gDNA_template>
            <first_frame> F  N  S  K  I  F  S  F  Q  F  G  T  K  F  S  S  S  L  G  F  R  I  S  V  S  L  S  F  P  C  L  H  L  L  N  L  I  H  R  N  P  N  F  V  Y  N  H  Q  W  T  A  A  S  L  V  E  N  R  *  G  G  R  P  R  P  M  K  L  Q  E  D  G  G  G  L  R  W  S  S  G  R  V  R  P  Q  L  C  R  G  R  S  F  S  R  T  L  I  S  L  M  L  M  L  S  V  L  V  Q  R  *  C  R  L  E  L  L  L  A  F  K  L  Q  C  R  I  L  L  S  R  L  D  *  L  R :   D  N  L  L  I  R  K  S  R  M  H  L  L  E  I  V  *  M  L  *  *  K  R  L  N  A  Y  M  W :   A  N  K  V  M  M  R  K  I  L  M  I  S  Q  M  T  M  N  M  T  L  K  I  L  S  *  M  I  L  S  W :   M  N  I  F  R  L  I  T  Q  Q  *  S  M  M  V  S  L  S  I  V  E  S  W  S  A   : L  S  Q  F  H  Q  R  I  S  N  Q  K  R  G  E  E  K  I  W  Q  K  A  M  L  G  M  M  M  D  T  I  Q  V  N  L  *  K  S  E </first_frame>
            <second_frame>  S  I  L  K  F  S  L  F  N  L  V  P  N  F  P  L  L  *  G  F  E  S  V  F  P  S  L  F  H  V  F  I  F  *  I  S  Y  I  V  T  L  I  S  F  T  I  T  N  G  R  R  L  H  W  W  R  T  G  R  E  G  V  H  V  L  *  S  C  R  R  T  A  E  V  Y  G  G  A  Q  A  G  *  D  H  N  C  V  V  E  E  A  S  Q  G  R  *  *  V  *  C  *  C  C  R  F  W  S  N  D  D  A  G  W  S  S  C  *  H  S  N  S  S  A  A  S  C  S  R  G  S  I  S  S   : G  T  T  C  *  *  G  S  Q  G  C  T  S  W  K  S  F  K  C  C  D  R  K  D  *  T  L  I  C   : G  Q  T  K  *  *  *  G  R  S  *  *  F  P  R  *  R  *  I  *  H  *  R  F  F  H  R  *  Y  *  A   : G  *  I  F  S  G  *  *  L  S  N  K  A  *  W  F  L  C  Q  S  W  K  V  G  A  H  :  *  A  S  F  T  K  E  S  A  T  K  K  E  E  K  K  R  S  G  K  K  P  C  W  G  *  *  W  T  Q  S  K  *  T  C  K  S  R   </second_frame>
            <third_frame>   Q  F  *  N  F  L  F  S  I  W  Y  Q  I  F  L  F  F  R  V  S  N  Q  C  F  P  L  F  S  M  S  S  S  S  K  S  H  T  S  *  P  *  F  R  L  Q  S  P  M  D  G  G  F  T  G  G  E  P  V  G  R  A  S  T  S  Y  E  A  A  G  G  R  R  R  F  T  V  E  L  R  P  G  E  T  T  I  V  S  W  K  K  L  L  K  D  A  N  K  S  N  V  N  V  V  G  S  G  P  T  M  M  P  V  G  A  P  A  S  I  Q  T  P  V  P  H  P  A  L  E  A  R  L  A  P  :  G  Q  P  A  D  K  E  V  K  D  A  P  P  G  N  R  L  N  A  V  I  E  K  I  E  R  L  Y  V  :  G  K  Q  S  D  D  E  E  D  L  N  D  F  P  D  D  D  E  Y  D  T  E  D  S  F  I  D  D  T  E  L  :  D  E  Y  F  Q  V  D  N  S  A  I  K  H  D  G  F  F  V  N  R  G  K  L  E  R  I :   E  P  V  S  P  K  N  Q  Q  P  K  K  R  R  R  K  D  L  A  K  S  H  V  G  D  D  D  G  H  N  P  S  K  P  V  K  V  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26089" stop="25814"/>
                    <exon start="22040" stop="21954"/>
                    <exon start="21875" stop="21783"/>
                    <exon start="21622" stop="21546"/>
                    <exon start="18966" stop="18852"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRLQSPMDGGFTGGEPVGRASTSYEAAGGRRRFTVELRPGETTIVSWKKLLKDANKSNVNVVGSGPTMMPVGAPASIQTPVPHPALEARLAPGQPADKEVKDAPPGNRLNAVIEKIERLYVGKQSDDEEDLNDFPDDDEYDTEDSFIDDTELDEYFQVDNSAIKHDGFFVNRGKLERIEPVSPKNQQPKKRRRKDLAKSHVGDDDGHNPSKPVKVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="28684" PGL_stop="29939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28684" e_stop="29939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28684" e_stop="29939" e_length="1256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28684" stop="29298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28719" stop="29087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29280" stop="29939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539195" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAAGGCTGCATTTGAGATCTTCAATAAGTTTGGGGATTTAGGATGTGCACCAAATGCTGATACATACTATTTTACCATTGAAGCACTTTCTAGGCGATCGATTTATGATTGGGCTTCTACTGTTTGTGAGAAGATGCTTAATGCTGATAAGTTGCCTGGTGCTGAGAAAGTTGGAAAGATTGTTTCTTTTCTGTGTAAAGGAAATAAGTGTAGAGATGCACATCTGGTTTATTTGTCGGCAAAGGAGAAAAATATTAATCTGCCTGTATCTTCTATTAAGTTGTTGATCAGCTCTCTTTGTCGCAAAGATGAAGGCGTTAAACTTGCAATGGAGGTGTTGGATGAGTTCCCCAAAGAAGAGCGGAAGCATGCCATTAAGTCATTCTCACATGTCATCAATGGGCTGTGTAGGGCAAATGATGTAACAGGGGAAAAGCAGCTGCGTTCCTATTGCAGTGAAGACATTGACGAGGCCAAAAACTTGCTCTTAAAAATGATAGATGCAGGTCCACCACCTGGCAATGCAGTCTTTAATACAGTTATTAATGCGCTCTCCAAGAAGGGAGAAATGGGAGAAGCTAGGAAACTATTGAAGGTGATGGAGGGTAGAGGTTTGAAACCTGATGTGTACACTTATAGTGTAATCATGAGTGGTTATACAAAGGGAGGTGAGATGGAGGAGGCCTGCAAGATTTTGAATGAAGCCAAAAAGAAGCACTCCTGTCTAAGTCCCGTCACTTTTCACACAATTATTCGGGGCTATTTCAAGCTCGAACAGTATGACAAGGCTCTGGAACTATTGGGAGATATGAAGGAGTATGGAGTTCAGCCTAATGCGGATGAATATAACAAATTTATTCAATCTCTATGCCTTAAGGCTTTAGATTGGACAACAGCAGAGAAACTGCTTGAGGAGATGAAGGAGAATGGGGTGCATCTAAATGCAATCACAAAGGGTCTCATAAGAGCAGTTAAGGAGTTAGAACAGGAAGAAGTAGGAACAAATGAAATAACGGCTACAGCATAGTAGGTACCCTATCTCTGCCTTTAGCTGTAGGGATGTATCTTCTGTTTCTTTTTTATGTTATGGTCTGAGATAATAGCAGGCTTAAAACTGTAACACCTGCATTTTGTATGATGAACAACCATTAGAATTCTTAAGAAAGGATATTTTTTTTGTTCATTTTAAAATAATGTTTGCTGCCAAATCTCTTGAGTTGAATGGAAGTTCCGTAACTAAGACTTTCAAAAGGG</gDNA_template>
            <first_frame> G  K  A  A  F  E  I  F  N  K  F  G  D  L  G  C  A  P  N  A  D  T  Y  Y  F  T  I  E  A  L  S  R  R  S  I  Y  D  W  A  S  T  V  C  E  K  M  L  N  A  D  K  L  P  G  A  E  K  V  G  K  I  V  S  F  L  C  K  G  N  K  C  R  D  A  H  L  V  Y  L  S  A  K  E  K  N  I  N  L  P  V  S  S  I  K  L  L  I  S  S  L  C  R  K  D  E  G  V  K  L  A  M  E  V  L  D  E  F  P  K  E  E  R  K  H  A  I  K  S  F  S  H  V  I  N  G  L  C  R  A  N  D  V  T  G  E  K  Q  L  R  S  Y  C  S  E  D  I  D  E  A  K  N  L  L  L  K  M  I  D  A  G  P  P  P  G  N  A  V  F  N  T  V  I  N  A  L  S  K  K  G  E  M  G  E  A  R  K  L  L  K  V  M  E  G  R  G  L  K  P  D  V  Y  T  Y  S  V  I  M  S  G  Y  T  K  G  G  E  M  E  E  A  C  K  I  L  N  E  A  K  K  K  H  S  C  L  S  P  V  T  F  H  T  I  I  R  G  Y  F  K  L  E  Q  Y  D  K  A  L  E  L  L  G  D  M  K  E  Y  G  V  Q  P  N  A  D  E  Y  N  K  F  I  Q  S  L  C  L  K  A  L  D  W  T  T  A  E  K  L  L  E  E  M  K  E  N  G  V  H  L  N  A  I  T  K  G  L  I  R  A  V  K  E  L  E  Q  E  E  V  G  T  N  E  I  T  A  T  A  *  *  V  P  Y  L  C  L  *  L  *  G  C  I  F  C  F  F  F  M  L  W  S  E  I  I  A  G  L  K  L  *  H  L  H  F  V  *  *  T  T  I  R  I  L  K  K  G  Y  F  F  C  S  F  *  N  N  V  C  C  Q  I  S  *  V  E  W  K  F  R  N  *  D  F  Q  K   </first_frame>
            <second_frame>  E  R  L  H  L  R  S  S  I  S  L  G  I  *  D  V  H  Q  M  L  I  H  T  I  L  P  L  K  H  F  L  G  D  R  F  M  I  G  L  L  L  F  V  R  R  C  L  M  L  I  S  C  L  V  L  R  K  L  E  R  L  F  L  F  C  V  K  E  I  S  V  E  M  H  I  W  F  I  C  R  Q  R  R  K  I  L  I  C  L  Y  L  L  L  S  C  *  S  A  L  F  V  A  K  M  K  A  L  N  L  Q  W  R  C  W  M  S  S  P  K  K  S  G  S  M  P  L  S  H  S  H  M  S  S  M  G  C  V  G  Q  M  M  *  Q  G  K  S  S  C  V  P  I  A  V  K  T  L  T  R  P  K  T  C  S  *  K  *  *  M  Q  V  H  H  L  A  M  Q  S  L  I  Q  L  L  M  R  S  P  R  R  E  K  W  E  K  L  G  N  Y  *  R  *  W  R  V  E  V  *  N  L  M  C  T  L  I  V  *  S  *  V  V  I  Q  R  E  V  R  W  R  R  P  A  R  F  *  M  K  P  K  R  S  T  P  V  *  V  P  S  L  F  T  Q  L  F  G  A  I  S  S  S  N  S  M  T  R  L  W  N  Y  W  E  I  *  R  S  M  E  F  S  L  M  R  M  N  I  T  N  L  F  N  L  Y  A  L  R  L  *  I  G  Q  Q  Q  R  N  C  L  R  R  *  R  R  M  G  C  I  *  M  Q  S  Q  R  V  S  *  E  Q  L  R  S  *  N  R  K  K  *  E  Q  M  K  *  R  L  Q  H  S  R  Y  P  I  S  A  F  S  C  R  D  V  S  S  V  S  F  L  C  Y  G  L  R  *  *  Q  A  *  N  C  N  T  C  I  L  Y  D  E  Q  P  L  E  F  L  R  K  D  I  F  F  V  H  F  K  I  M  F  A  A  K  S  L  E  L  N  G  S  S  V  T  K  T  F  K  R  </second_frame>
            <third_frame>   K  G  C  I  *  D  L  Q  *  V  W  G  F  R  M  C  T  K  C  *  Y  I  L  F  Y  H  *  S  T  F  *  A  I  D  L  *  L  G  F  Y  C  L  *  E  D  A  *  C  *  *  V  A  W  C  *  E  S  W  K  D  C  F  F  S  V  *  R  K  *  V  *  R  C  T  S  G  L  F  V  G  K  G  E  K  Y  *  S  A  C  I  F  Y  *  V  V  D  Q  L  S  L  S  Q  R  *  R  R  *  T  C  N  G  G  V  G  *  V  P  Q  R  R  A  E  A  C  H  *  V  I  L  T  C  H  Q  W  A  V  *  G  K  *  C  N  R  G  K  A  A  A  F  L  L  Q  *  R  H  *  R  G  Q  K  L  A  L  K  N  D  R  C  R  S  T  T  W  Q  C  S  L  *  Y  S  Y  *  C  A  L  Q  E  G  R  N  G  R  S  *  E  T  I  E  G  D  G  G  *  R  F  E  T  *  C  V  H  L  *  C  N  H  E  W  L  Y  K  G  R  *  D  G  G  G  L  Q  D  F  E  *  S  Q  K  E  A  L  L  S  K  S  R  H  F  S  H  N  Y  S  G  L  F  Q  A  R  T  V  *  Q  G  S  G  T  I  G  R  Y  E  G  V  W  S  S  A  *  C  G  *  I  *  Q  I  Y  S  I  S  M  P  *  G  F  R  L  D  N  S  R  E  T  A  *  G  D  E  G  E  W  G  A  S  K  C  N  H  K  G  S  H  K  S  S  *  G  V  R  T  G  R  S  R  N  K  *  N  N  G  Y  S  I  V  G  T  L  S  L  P  L  A  V  G  M  Y  L  L  F  L  F  Y  V  M  V  *  D  N  S  R  L  K  T  V  T  P  A  F  C  M  M  N  N  H  *  N  S  *  E  R  I  F  F  L  F  I  L  K  *  C  L  L  P  N  L  L  S  *  M  E  V  P  *  L  R  L  S  K  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28684" stop="29712"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKAAFEIFNKFGDLGCAPNADTYYFTIEALSRRSIYDWASTVCEKMLNADKLPGAEKVGKIVSFLCKGNKCRDAHLVYLSAKEKNINLPVSSIKLLISSLCRKDEGVKLAMEVLDEFPKEERKHAIKSFSHVINGLCRANDVTGEKQLRSYCSEDIDEAKNLLLKMIDAGPPPGNAVFNTVINALSKKGEMGEARKLLKVMEGRGLKPDVYTYSVIMSGYTKGGEMEEACKILNEAKKKHSCLSPVTFHTIIRGYFKLEQYDKALELLGDMKEYGVQPNADEYNKFIQSLCLKALDWTTAEKLLEEMKENGVHLNAITKGLIRAVKELEQEEVGTNEITATA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="39716" PGL_stop="37426"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39716" e_stop="39279"/>
            <exon e_start="39146" e_stop="37426"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.979"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="39716" e_stop="39279" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39278" i_stop="39147" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="39146" e_stop="37426" e_length="1721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39716" stop="39279"/>
              <exon start="39146" stop="37426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746215" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATCCCAATTTTTCATAAATATAATCAAACTCAAAATAAAAATATTACAAAAAATAAATAACAAAGTATACATAATTCATAAAAAAAAATGAATTCTTTTTTTTTTGATAATGGAAAATCAAAGGCTAATTGATAACCCTTGTTCAGTAATATGGAATGACTGGTGGTGGTGGAGATGCGTAGGAGACTCCGATTACCGGTGGGAGAGGAATATTTTCGTAAAATGGTGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGAGGAGGAGGAGATGGTGATGGAGGTGGTGGTGATGAGTAGGTGTATGGTGGTGATGGTTTTGGTTCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGT : GTGATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGTGGTGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTGATAGGTTGGGGACTTTTTGTAAGGTGCTGGTGGAGGAAGAGGAGTTGATTTAGGTGGCGGCGGAGATCGCTTGTTATGCGAACCCGAAGACTTCCAAGTAGGTGGTGGTGGGCCTCTTGGCTTTGGTTTTGGTTTTGGCTTTGTCGAAGGAGATGTAGCAAAAGGGCTATAACACTTGGATTTCCTACAATCATACGGTTTTGCATCATCCGAAGAGCATTCTTTAGCAGATCTTTGATTCTTCTTTCCAACGATACAGTTCTCCTGGCCGTCACCAGATCTAGTCGCAGCACAAACTGGAGCTTCCCCGGTGAAGTAATTGAAGGAATACGTAAAGTTTTGCAACCTAGGAAGTTGGCAAATGCTAGCTGGTATAACCCCAGTAAGCTTGTTGTGAGCCACATTCAGTTCCTCCACACTCCTCATTTTGCTCACAGTTGATGGCAATGAGCCTTGAATCTTGTTGAAGCTAACATCAAACACGGTTAACTTGTTCAACAATCCAATCTCCATTGGCAAACACCCAGTGAGGTTATCATTCATCAATATCAACTCATTCAACGTTTTCCCCATTTTCCCAATACTTGCGGGAATACACCCTCCAAGATCGTTATTAGCAAACACAAGAACCGAAACAGGAGAGTTACCCAAGTTCTCCGGGATGCCAAAACGGAATCTATTGTCATTCAAAAACAACGCATCCAAATCTTTATCGAAAAGTCCTGAAGGAACTGGTCCTTCAAAGTCATTAAACCTTAGATCCAAAAACTTCAAAGAAGGTAGTGAAAGAACTACCTTAGGAAACCCACCAACAAACCTATTATTACTCAAATCAAGCTCCCTAAGAAGCTTCAAATGGCTAAAGGTTTTTGGTACAACTCCACAAAAACGATTCGAGTTGAGATGGAAAAGAACCAGATCTGTAAGAAGACCAAGTTCTGCAACTAATGAACCAGCAATATCAGCATGATTAAGATCAATGCCAGCTACAACTCTAATCGAATCATCCATTAACGAAGGAGCACAAAACACTCCACCATAGGAACACACATTTGGACCTGTCCAATTAGCTGTGAAGTTAAAAGGATCAGAAAACATTGCTGTTTTCCAATACTGCAACGCGATATAAGCATCGCGAATCCTTGAGTTTTCAAAACTCAACTTACTAGCATTAGCCTTAATGTCATCTAATCCGATATCGCTATCACCTTCTTGTCCTACCACATACGAGATCTGGTAAGACAAAAGAGTAATAACGAAAAAAGAAATTAATACGCCCCGGCTAGGAGGCCGCATTGCTGAATCTGATAGAGATTTTCTAGCTATGAAGAAGAAAATGAAGTTTTTGTTTTTTCACAATGTGTTGTTGAATGAAATTGATTTG</gDNA_template>
            <first_frame> I  I  P  I  F  H  K  Y  N  Q  T  Q  N  K  N  I  T  K  N  K  *  Q  S  I  H  N  S  *  K  K  M  N  S  F  F  F  D  N  G  K  S  K  A  N  *  *  P  L  F  S  N  M  E  *  L  V  V  V  E  M  R  R  R  L  R  L  P  V  G  E  E  Y  F  R  K  M  V  V  V  V  A  E  K  S  K  W  A  G  E  V  M  V  M  V  A  V  V  M  S  S  S  K  W  E  E  E  E  M  V  M  E  V  V  V  M  S  R  C  M  V  V  M  V  L  V  P  N  V  N  *  E  V  E  V  V  V  R  Y  K  V  G  *  V  G  L  G  :  V  M  V  F  L  D  A  R  M  M  V  L  V  V  M  G  F  L  G  V  R  V  M  V  E  F  L  D  A  R  T  T  V  L  V  V  V  V  M  E  F  L  D  V  H  T  T  V  L  V  V  V  V  V  I  *  A  C  K  *  V  V  A  H  D  T  R  G  V  V  E  N  N  K  L  V  V  V  G  T  M  E  M  G  G  N  I  Q  V  R  V  E  E  V  N  D  E  L  Q  V  K  F  C  E  *  V  V  V  D  F  Y  V  D  R  L  G  T  F  C  K  V  L  V  E  E  E  E  L  I  *  V  A  A  E  I  A  C  Y  A  N  P  K  T  S  K  *  V  V  V  G  L  L  A  L  V  L  V  L  A  L  S  K  E  M  *  Q  K  G  Y  N  T  W  I  S  Y  N  H  T  V  L  H  H  P  K  S  I  L  *  Q  I  F  D  S  S  F  Q  R  Y  S  S  P  G  R  H  Q  I  *  S  Q  H  K  L  E  L  P  R  *  S  N  *  R  N  T  *  S  F  A  T  *  E  V  G  K  C  *  L  V  *  P  Q  *  A  C  C  E  P  H  S  V  P  P  H  S  S  F  C  S  Q  L  M  A  M  S  L  E  S  C  *  S  *  H  Q  T  R  L  T  C  S  T  I  Q  S  P  L  A  N  T  Q  *  G  Y  H  S  S  I  S  T  H  S  T  F  S  P  F  S  Q  Y  L  R  E  Y  T  L  Q  D  R  Y  *  Q  T  Q  E  P  K  Q  E  S  Y  P  S  S  P  G  C  Q  N  G  I  Y  C  H  S  K  T  T  H  P  N  L  Y  R  K  V  L  K  E  L  V  L  Q  S  H  *  T  L  D  P  K  T  S  K  K  V  V  K  E  L  P  *  E  T  H  Q  Q  T  Y  Y  Y  S  N  Q  A  P  *  E  A  S  N  G  *  R  F  L  V  Q  L  H  K  N  D  S  S  *  D  G  K  E  P  D  L  *  E  D  Q  V  L  Q  L  M  N  Q  Q  Y  Q  H  D  *  D  Q  C  Q  L  Q  L  *  S  N  H  P  L  T  K  E  H  K  T  L  H  H  R  N  T  H  L  D  L  S  N  *  L  *  S  *  K  D  Q  K  T  L  L  F  S  N  T  A  T  R  Y  K  H  R  E  S  L  S  F  Q  N  S  T  Y  *  H  *  P  *  C  H  L  I  R  Y  R  Y  H  L  L  V  L  P  H  T  R  S  G  K  T  K  E  *  *  R  K  K  K  L  I  R  P  G  *  E  A  A  L  L  N  L  I  E  I  F  *  L  *  R  R  K  *  S  F  C  F  F  T  M  C  C  *  M  K  L  I   </first_frame>
            <second_frame>  *  S  Q  F  F  I  N  I  I  K  L  K  I  K  I  L  Q  K  I  N  N  K  V  Y  I  I  H  K  K  K  *  I  L  F  F  L  I  M  E  N  Q  R  L  I  D  N  P  C  S  V  I  W  N  D  W  W  W  W  R  C  V  G  D  S  D  Y  R  W  E  R  N  I  F  V  K  W  W  W  W  W  R  R  R  V  S  G  R  G  R  *  W  *  W  W  R  W  *  *  V  V  V  S  G  R  R  R  R  W  *  W  R  W  W  *  *  V  G  V  W  W  *  W  F  W  F  P  M  *  I  R  R  W  R  W  W  F  V  T  R  W  G  R  W  G  W  V :   *  W  C  F  W  M  L  V  *  W  C  W  W  *  W  G  F  W  V  F  V  *  W  W  S  F  W  M  L  V  R  R  C  W  W  *  W  *  W  S  F  W  M  F  I  R  R  C  W  W  W  W  W  *  F  R  L  V  S  R  W  W  L  M  I  H  G  G  W  W  R  I  I  N  W  W  W  W  G  R  W  R  W  V  V  I  Y  R  *  G  W  R  R  *  M  M  S  Y  R  *  N  F  V  S  R  W  W  W  T  S  M  L  I  G  W  G  L  F  V  R  C  W  W  R  K  R  S  *  F  R  W  R  R  R  S  L  V  M  R  T  R  R  L  P  S  R  W  W  W  A  S  W  L  W  F  W  F  W  L  C  R  R  R  C  S  K  R  A  I  T  L  G  F  P  T  I  I  R  F  C  I  I  R  R  A  F  F  S  R  S  L  I  L  L  S  N  D  T  V  L  L  A  V  T  R  S  S  R  S  T  N  W  S  F  P  G  E  V  I  E  G  I  R  K  V  L  Q  P  R  K  L  A  N  A  S  W  Y  N  P  S  K  L  V  V  S  H  I  Q  F  L  H  T  P  H  F  A  H  S  *  W  Q  *  A  L  N  L  V  E  A  N  I  K  H  G  *  L  V  Q  Q  S  N  L  H  W  Q  T  P  S  E  V  I  I  H  Q  Y  Q  L  I  Q  R  F  P  H  F  P  N  T  C  G  N  T  P  S  K  I  V  I  S  K  H  K  N  R  N  R  R  V  T  Q  V  L  R  D  A  K  T  E  S  I  V  I  Q  K  Q  R  I  Q  I  F  I  E  K  S  *  R  N  W  S  F  K  V  I  K  P  *  I  Q  K  L  Q  R  R  *  *  K  N  Y  L  R  K  P  T  N  K  P  I  I  T  Q  I  K  L  P  K  K  L  Q  M  A  K  G  F  W  Y  N  S  T  K  T  I  R  V  E  M  E  K  N  Q  I  C  K  K  T  K  F  C  N  *  *  T  S  N  I  S  M  I  K  I  N  A  S  Y  N  S  N  R  I  I  H  *  R  R  S  T  K  H  S  T  I  G  T  H  I  W  T  C  P  I  S  C  E  V  K  R  I  R  K  H  C  C  F  P  I  L  Q  R  D  I  S  I  A  N  P  *  V  F  K  T  Q  L  T  S  I  S  L  N  V  I  *  S  D  I  A  I  T  F  L  S  Y  H  I  R  D  L  V  R  Q  K  S  N  N  E  K  R  N  *  Y  A  P  A  R  R  P  H  C  *  I  *  *  R  F  S  S  Y  E  E  E  N  E  V  F  V  F  S  Q  C  V  V  E  *  N  *  F  </second_frame>
            <third_frame>   N  P  N  F  S  *  I  *  S  N  S  K  *  K  Y  Y  K  K  *  I  T  K  Y  T  *  F  I  K  K  N  E  F  F  F  F  *  *  W  K  I  K  G  *  L  I  T  L  V  Q  *  Y  G  M  T  G  G  G  G  D  A  *  E  T  P  I  T  G  G  R  G  I  F  S  *  N  G  G  G  G  G  G  E  E  *  V  G  G  G  G  D  G  D  G  G  G  G  D  E  *  *  *  V  G  G  G  G  D  G  D  G  G  G  G  D  E  *  V  Y  G  G  D  G  F  G  S  Q  C  E  L  G  G  G  G  G  G  S  L  Q  G  G  V  G  G  V  G   : C  D  G  V  F  G  C  S  Y  D  G  V  G  G  D  G  V  F  G  C  S  C  D  G  G  V  F  G  C  S  Y  D  G  V  G  G  S  G  D  G  V  F  G  C  S  Y  D  G  V  G  G  G  G  G  D  L  G  L  *  V  G  G  G  S  *  Y  T  G  G  G  G  E  *  *  T  G  G  G  G  D  D  G  D  G  W  *  Y  T  G  E  G  G  G  G  E  *  *  V  T  G  E  I  L  *  V  G  G  G  G  L  L  C  *  *  V  G  D  F  L  *  G  A  G  G  G  R  G  V  D  L  G  G  G  G  D  R  L  L  C  E  P  E  D  F  Q  V  G  G  G  G  P  L  G  F  G  F  G  F  G  F  V  E  G  D  V  A  K  G  L  *  H  L  D  F  L  Q  S  Y  G  F  A  S  S  E  E  H  S  L  A  D  L  *  F  F  F  P  T  I  Q  F  S  W  P  S  P  D  L  V  A  A  Q  T  G  A  S  P  V  K  *  L  K  E  Y  V  K  F  C  N  L  G  S  W  Q  M  L  A  G  I  T  P  V  S  L  L  *  A  T  F  S  S  S  T  L  L  I  L  L  T  V  D  G  N  E  P  *  I  L  L  K  L  T  S  N  T  V  N  L  F  N  N  P  I  S  I  G  K  H  P  V  R  L  S  F  I  N  I  N  S  F  N  V  F  P  I  F  P  I  L  A  G  I  H  P  P  R  S  L  L  A  N  T  R  T  E  T  G  E  L  P  K  F  S  G  M  P  K  R  N  L  L  S  F  K  N  N  A  S  K  S  L  S  K  S  P  E  G  T  G  P  S  K  S  L  N  L  R  S  K  N  F  K  E  G  S  E  R  T  T  L  G  N  P  P  T  N  L  L  L  L  K  S  S  S  L  R  S  F  K  W  L  K  V  F  G  T  T  P  Q  K  R  F  E  L  R  W  K  R  T  R  S  V  R  R  P  S  S  A  T  N  E  P  A  I  S  A  *  L  R  S  M  P  A  T  T  L  I  E  S  S  I  N  E  G  A  Q  N  T  P  P  *  E  H  T  F  G  P  V  Q  L  A  V  K  L  K  G  S  E  N  I  A  V  F  Q  Y  C  N  A  I  *  A  S  R  I  L  E  F  S  K  L  N  L  L  A  L  A  L  M  S  S  N  P  I  S  L  S  P  S  C  P  T  T  Y  E  I  W  *  D  K  R  V  I  T  K  K  E  I  N  T  P  R  L  G  G  R  I  A  E  S  D  R  D  F  L  A  M  K  K  K  M  K  F  L  F  F  H  N  V  L  L  N  E  I  D  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38352" stop="37840"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILLKLTSNTVNLFNNPISIGKHPVRLSFININSFNVFPIFPILAGIHPPRSLLANTRTETGELPKFSGMPKRNLLSFKNNASKSLSKSPEGTGPSKSLNLRSKNFKEGSERTTLGNPPTNLLLLKSSSLRSFKWLKVFGTTPQKRFELRWKRTRSVRRPSSATNEPAISA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38761" stop="38369"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRWRRRSLVMRTRRLPSRWWWASWLWFWFWLCRRRCSKRAITLGFPTIIRFCIIRRAFFSRSLILLSNDTVLLAVTRSSRSTNWSFPGEVIEGIRKVLQPRKLANASWYNPSKLVVSHIQFLHTPHFAHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39366" stop="39279"/>
                    <exon start="39146" stop="38971"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYGGDGFGSQCELGGGGGGSLQGGVGGVGCDGVFGCSYDGVGGDGVFGCSCDGGVFGCSYDGVGGSGDGVFGCSYDGVGGGGGDLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39530" e_stop="39195"/>
            <exon e_start="39144" e_stop="38804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.958"/>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="39530" e_stop="39195" e_length="336"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39194" i_stop="39145" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.918">
            <gDNA_exon_boundary e_start="39144" e_stop="38804" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39530" stop="39195"/>
              <exon start="39144" stop="38804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707354" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACTCCGATTACCGGTGGGAGAGGAATATTTTCGTAAAATGGTGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGAGGAGGAGGAGATGGTGATGGAGGTGGTGGTGATGAGTAGGTGTATGGTGGTGATGGTTTTGGTTCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGTGTGATGGAGTTTTTGGGTGTTCGTATGATGGTGTTGGTGGTGGTGGTGGTGATTGGGGTTGTGGATGCTCGTATGATGGTGTTG : GATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGTGGTGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTGGTGGTGGTGGGGACGATGGAGATGGGTGGTAATATACAGGTGAGGGTGGAGGAGGTGAATGATGAGTTACAGGTGAAATTTTGTGAGTAGGTGGTGGTGGACTTCTATGTTGATAGGT</gDNA_template>
            <first_frame> R  L  R  L  P  V  G  E  E  Y  F  R  K  M  V  V  V  V  A  E  K  S  K  W  A  G  E  V  M  V  M  V  A  V  V  M  S  S  S  K  W  E  E  E  E  M  V  M  E  V  V  V  M  S  R  C  M  V  V  M  V  L  V  P  N  V  N  *  E  V  E  V  V  V  R  Y  K  V  G  *  V  G  L  G  V  M  E  F  L  G  V  R  M  M  V  L  V  V  V  V  V  I  G  V  V  D  A  R  M  M  V  L  :  D  G  V  F  G  C  S  Y  D  G  V  G  G  D  G  V  F  G  C  S  C  D  G  G  V  F  G  C  S  Y  D  G  V  G  G  S  G  D  G  V  F  G  C  S  Y  D  G  V  G  G  G  G  G  D  L  G  L  *  V  G  G  G  S  *  Y  T  G  G  G  G  E  *  *  T  G  G  G  G  D  D  G  D  G  W  *  Y  T  G  E  G  G  G  G  E  *  *  V  T  G  E  I  L  *  V  G  G  G  G  L  L  C  *  *   </first_frame>
            <second_frame>  D  S  D  Y  R  W  E  R  N  I  F  V  K  W  W  W  W  W  R  R  R  V  S  G  R  G  R  *  W  *  W  W  R  W  *  *  V  V  V  S  G  R  R  R  R  W  *  W  R  W  W  *  *  V  G  V  W  W  *  W  F  W  F  P  M  *  I  R  R  W  R  W  W  F  V  T  R  W  G  R  W  G  W  V  *  W  S  F  W  V  F  V  *  W  C  W  W  W  W  W  *  L  G  L  W  M  L  V  *  W  C  W :   M  V  F  L  D  A  R  M  M  V  L  V  V  M  G  F  L  G  V  R  V  M  V  E  F  L  D  A  R  T  T  V  L  V  V  V  V  M  E  F  L  D  V  H  T  T  V  L  V  V  V  V  V  I  *  A  C  K  *  V  V  A  H  D  T  R  G  V  V  E  N  N  K  L  V  V  V  G  T  M  E  M  G  G  N  I  Q  V  R  V  E  E  V  N  D  E  L  Q  V  K  F  C  E  *  V  V  V  D  F  Y  V  D  R  </second_frame>
            <third_frame>   T  P  I  T  G  G  R  G  I  F  S  *  N  G  G  G  G  G  G  E  E  *  V  G  G  G  G  D  G  D  G  G  G  G  D  E  *  *  *  V  G  G  G  G  D  G  D  G  G  G  G  D  E  *  V  Y  G  G  D  G  F  G  S  Q  C  E  L  G  G  G  G  G  G  S  L  Q  G  G  V  G  G  V  G  C  D  G  V  F  G  C  S  Y  D  G  V  G  G  G  G  G  D  W  G  C  G  C  S  Y  D  G  V   : G  W  C  F  W  M  L  V  *  W  C  W  W  *  W  G  F  W  V  F  V  *  W  W  S  F  W  M  L  V  R  R  C  W  W  *  W  *  W  S  F  W  M  F  I  R  R  C  W  W  W  W  W  *  F  R  L  V  S  R  W  W  L  M  I  H  G  G  W  W  R  I  I  N  W  W  W  W  G  R  W  R  W  V  V  I  Y  R  *  G  W  R  R  *  M  M  S  Y  R  *  N  F  V  S  R  W  W  W  T  S  M  L  I  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39290" stop="39195"/>
                    <exon start="39144" stop="38971"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGLGVMEFLGVRMMVLVVVVVIGVVDARMMVLDGVFGCSYDGVGGDGVFGCSCDGGVFGCSYDGVGGSGDGVFGCSYDGVGGGGGDLGL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39530" stop="39327"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRLPVGEEYFRKMVVVVAEKSKWAGEVMVMVAVVMSSSKWEEEEMVMEVVVMSRCMVVMVLVPNVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39366" stop="39195"/>
                    <exon start="39144" stop="39119"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYGGDGFGSQCELGGGGGGSLQGGVGGVGCDGVFGCSYDGVGGGGGDWGCGCSYDGVGWCFWMLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="39615" e_stop="39393"/>
            <exon e_start="39342" e_stop="38922"/>
            <exon e_start="38075" e_stop="37940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.960"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.933"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="39615" e_stop="39393" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39392" i_stop="39343" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.933">
            <gDNA_exon_boundary e_start="39342" e_stop="38922" e_length="421"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38921" i_stop="38076" i_length="846"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38075" e_stop="37940" e_length="136"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39615" stop="39393"/>
              <exon start="39342" stop="38922"/>
              <exon start="38075" stop="37940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704854" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTGATAATGGAAAATCAAAGGCTAATTGATAACCCTTGTTCAGTAATATGGAATGACTGGTGGTGGTGGAGATGCGTAGGAGACTCCGATTACCGGTGGGAGAGGAATATTTTCGTAAAATGGTGGTGGTGGTGGCGGAGAAGAGTAAGTGGGCGGGGGAGGTGATGGTGATGGTGGCGGTGGTGATGAGTAGTAGTAAGTGGGAGGAGGAGGAGATG : TCCCAATGTGAATTAGGAGGTGGAGGTGGTGGTTCGTTACAAGGTGGGGTAGGTGGGGTTGGGTGTGATGGAGTTTTTGGGTGTTCGTATGATGGTGTTGGTGGTGGTGGTGGTGATTGGGGTTGTGGATGCTCGTATGATGGTGTTGGTGGTGGTGGTGATGGGGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGTGTTTTTGGATGCTCGTATGATGGTGTTGGTGGTGATGGGGTTTTTGGGTGTTCGTGTGATGGTGGAGTTTTTGGATGCTCGTACGACGGTGTTGGTGGTAGTGGTGATGGAGTTTTTGGATGTTCATACGACGGTGTTGGTGGTGGTGGTGGTGATTTAGGCTTGTAAGTAGGTGGTGGCTCATGATACACGGGGGGTGGTGGAGAATAATAAACTG : GTCCTTCAAAGTCATTAAACCTTAGATCCAAAAACTTCAAAGAAGGTAGTGAAAGAACTACCTTAGGAAACCCACCAACAAACCTATTATTACTCAAATCAAGCTCCCTAAGAAGCTTCAAATGGCTAAAGGTTTT</gDNA_template>
            <first_frame> F  F  *  *  W  K  I  K  G  *  L  I  T  L  V  Q  *  Y  G  M  T  G  G  G  G  D  A  *  E  T  P  I  T  G  G  R  G  I  F  S  *  N  G  G  G  G  G  G  E  E  *  V  G  G  G  G  D  G  D  G  G  G  G  D  E  *  *  *  V  G  G  G  G  D   : V  P  M  *  I  R  R  W  R  W  W  F  V  T  R  W  G  R  W  G  W  V  *  W  S  F  W  V  F  V  *  W  C  W  W  W  W  W  *  L  G  L  W  M  L  V  *  W  C  W  W  W  W  *  W  G  F  W  M  L  V  *  W  C  W  W  *  W  C  F  W  M  L  V  *  W  C  W  W  *  W  G  F  W  V  F  V  *  W  W  S  F  W  M  L  V  R  R  C  W  W  *  W  *  W  S  F  W  M  F  I  R  R  C  W  W  W  W  W  *  F  R  L  V  S  R  W  W  L  M  I  H  G  G  W  W  R  I  I  N  W :   S  F  K  V  I  K  P  *  I  Q  K  L  Q  R  R  *  *  K  N  Y  L  R  K  P  T  N  K  P  I  I  T  Q  I  K  L  P  K  K  L  Q  M  A  K  G  F </first_frame>
            <second_frame>  F  F  D  N  G  K  S  K  A  N  *  *  P  L  F  S  N  M  E  *  L  V  V  V  E  M  R  R  R  L  R  L  P  V  G  E  E  Y  F  R  K  M  V  V  V  V  A  E  K  S  K  W  A  G  E  V  M  V  M  V  A  V  V  M  S  S  S  K  W  E  E  E  E  M  :  S  Q  C  E  L  G  G  G  G  G  G  S  L  Q  G  G  V  G  G  V  G  C  D  G  V  F  G  C  S  Y  D  G  V  G  G  G  G  G  D  W  G  C  G  C  S  Y  D  G  V  G  G  G  G  D  G  V  F  G  C  S  Y  D  G  V  G  G  D  G  V  F  G  C  S  Y  D  G  V  G  G  D  G  V  F  G  C  S  C  D  G  G  V  F  G  C  S  Y  D  G  V  G  G  S  G  D  G  V  F  G  C  S  Y  D  G  V  G  G  G  G  G  D  L  G  L  *  V  G  G  G  S  *  Y  T  G  G  G  G  E  *  *  T   : G  P  S  K  S  L  N  L  R  S  K  N  F  K  E  G  S  E  R  T  T  L  G  N  P  P  T  N  L  L  L  L  K  S  S  S  L  R  S  F  K  W  L  K  V   </second_frame>
            <third_frame>   F  L  I  M  E  N  Q  R  L  I  D  N  P  C  S  V  I  W  N  D  W  W  W  W  R  C  V  G  D  S  D  Y  R  W  E  R  N  I  F  V  K  W  W  W  W  W  R  R  R  V  S  G  R  G  R  *  W  *  W  W  R  W  *  *  V  V  V  S  G  R  R  R  R  C :   P  N  V  N  *  E  V  E  V  V  V  R  Y  K  V  G  *  V  G  L  G  V  M  E  F  L  G  V  R  M  M  V  L  V  V  V  V  V  I  G  V  V  D  A  R  M  M  V  L  V  V  V  V  M  G  F  L  D  A  R  M  M  V  L  V  V  M  V  F  L  D  A  R  M  M  V  L  V  V  M  G  F  L  G  V  R  V  M  V  E  F  L  D  A  R  T  T  V  L  V  V  V  V  M  E  F  L  D  V  H  T  T  V  L  V  V  V  V  V  I  *  A  C  K  *  V  V  A  H  D  T  R  G  V  V  E  N  N  K  L  :  V  L  Q  S  H  *  T  L  D  P  K  T  S  K  K  V  V  K  E  L  P  *  E  T  H  Q  Q  T  Y  Y  Y  S  N  Q  A  P  *  E  A  S  N  G  *  R  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39554" stop="39393"/>
                    <exon start="39342" stop="38971"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVVVEMRRRLRLPVGEEYFRKMVVVVAEKSKWAGEVMVMVAVVMSSSKWEEEEMSQCELGGGGGGSLQGGVGGVGCDGVFGCSYDGVGGGGGDWGCGCSYDGVGGGGDGVFGCSYDGVGGDGVFGCSYDGVGGDGVFGCSCDGGVFGCSYDGVGGSGDGVFGCSYDGVGGGGGDLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="37567" PGL_stop="38836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37567" e_stop="38836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="37567" e_stop="38836" e_length="1270"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37567" stop="38293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38078" stop="38538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38079" stop="38836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTACCAGATCTCGTATGTGGTAGGACAAGAAGGTGATAGCGATATCGGATTAGATGACATTAAGGCTAATGCTAGTAAGTTGAGTTTTGAAAACTCAAGGATTCGCGATGCTTATATCGCGTTGCAGTATTGGAAAACAGCAATGTTTTCTGATCCTTTTAACTTCACAGCTAATTGGACAGGTCCAAATGTGTGTTCCTATGGTGGAGTGTTTTGTGCTCCTTCGTTAATGGATGATTCGATTAGAGTTGTAGCTGGCATTGATCTTAATCATGCTGATATTGCTGGTTCATTAGTTGCAGAACTTGGTCTTCTTACAGATCTGGTTCTTTTCCATCTCAACTCGAATCGTTTTTGTGGAGTTGTACCAAAAACCTTTAGCCATTTGAAGCTTCTTAGGGAGCTTGATTTGAGTAATAATAGGTTTGTTGGTGGGTTTCCTAAGGTAGTTCTTTCACTACCTTCTTTGAAGTTTTTGGATCTAAGGTTTAATGACTTTGAAGGACCAGTTCCTTCAGGACTTTTCGATAAAGATTTGGATGCGTTGTTTTTGAATGACAATAGATTCCGTTTTGGCATCCCGGAGAACTTGGGTAACTCTCCTGTTTCGGTTCTTGTGTTTGCTAATAACGATCTTGGAGGGTGTATTCCCGCAAGTATTGGGAAAATGGGGAAAACGTTGAATGAGTTGATATTGATGAATGATAACCTCACTGGGTGTTTGCCAATGGAGATTGGATTGTTGAACAAGTTAACCGTGTTTGATGTTAGCTTCAACAAGATTCAAGGCTCATTGCCATCAACTGTGAGCAAAATGAGGAGTGTGGAGGAACTGAATGTGGCTCACAACAAGCTTACTGGGGTTATACCAGCTAGCATTTGCCAACTTCCTAGGTTGCAAAACTTTACGTATTCCTTCAATTACTTCACCGGGGAAGCTCCAGTTTGTGCTGCGACTAGATCTGGTGACGGCCAGGAGAACTGTATCGTTGGAAAGAAGAATCAAAGATCTGCTAAAGAATGCTCTTCGGATGATGCAAAACCGTATGATTGTAGGAAATCCAAGTGTTATAGCCCTTTTGCTACATCTCCTTCGACAAAGCCAAAACCAAAACCAAAGCCAAGAGGCCCACCACCACCTACTTGGAAGTCTTCGGGTTCGCATAACAAGCGATCTCCGCCGCCACCTAAATCAACTCCTCTTCCTCCACCAGCACCTTACAAAAAGTCCCCAACCTATCAACATAGAAGTCCACCACCACCTACT</gDNA_template>
            <first_frame> V  L  P  D  L  V  C  G  R  T  R  R  *  *  R  Y  R  I  R  *  H  *  G  *  C  *  *  V  E  F  *  K  L  K  D  S  R  C  L  Y  R  V  A  V  L  E  N  S  N  V  F  *  S  F  *  L  H  S  *  L  D  R  S  K  C  V  F  L  W  W  S  V  L  C  S  F  V  N  G  *  F  D  *  S  C  S  W  H  *  S  *  S  C  *  Y  C  W  F  I  S  C  R  T  W  S  S  Y  R  S  G  S  F  P  S  Q  L  E  S  F  L  W  S  C  T  K  N  L  *  P  F  E  A  S  *  G  A  *  F  E  *  *  *  V  C  W  W  V  S  *  G  S  S  F  T  T  F  F  E  V  F  G  S  K  V  *  *  L  *  R  T  S  S  F  R  T  F  R  *  R  F  G  C  V  V  F  E  *  Q  *  I  P  F  W  H  P  G  E  L  G  *  L  S  C  F  G  S  C  V  C  *  *  R  S  W  R  V  Y  S  R  K  Y  W  E  N  G  E  N  V  E  *  V  D  I  D  E  *  *  P  H  W  V  F  A  N  G  D  W  I  V  E  Q  V  N  R  V  *  C  *  L  Q  Q  D  S  R  L  I  A  I  N  C  E  Q  N  E  E  C  G  G  T  E  C  G  S  Q  Q  A  Y  W  G  Y  T  S  *  H  L  P  T  S  *  V  A  K  L  Y  V  F  L  Q  L  L  H  R  G  S  S  S  L  C  C  D  *  I  W  *  R  P  G  E  L  Y  R  W  K  E  E  S  K  I  C  *  R  M  L  F  G  *  C  K  T  V  *  L  *  E  I  Q  V  L  *  P  F  C  Y  I  S  F  D  K  A  K  T  K  T  K  A  K  R  P  T  T  T  Y  L  E  V  F  G  F  A  *  Q  A  I  S  A  A  T  *  I  N  S  S  S  S  T  S  T  L  Q  K  V  P  N  L  S  T  *  K  S  T  T  T  Y  </first_frame>
            <second_frame>  S  Y  Q  I  S  Y  V  V  G  Q  E  G  D  S  D  I  G  L  D  D  I  K  A  N  A  S  K  L  S  F  E  N  S  R  I  R  D  A  Y  I  A  L  Q  Y  W  K  T  A  M  F  S  D  P  F  N  F  T  A  N  W  T  G  P  N  V  C  S  Y  G  G  V  F  C  A  P  S  L  M  D  D  S  I  R  V  V  A  G  I  D  L  N  H  A  D  I  A  G  S  L  V  A  E  L  G  L  L  T  D  L  V  L  F  H  L  N  S  N  R  F  C  G  V  V  P  K  T  F  S  H  L  K  L  L  R  E  L  D  L  S  N  N  R  F  V  G  G  F  P  K  V  V  L  S  L  P  S  L  K  F  L  D  L  R  F  N  D  F  E  G  P  V  P  S  G  L  F  D  K  D  L  D  A  L  F  L  N  D  N  R  F  R  F  G  I  P  E  N  L  G  N  S  P  V  S  V  L  V  F  A  N  N  D  L  G  G  C  I  P  A  S  I  G  K  M  G  K  T  L  N  E  L  I  L  M  N  D  N  L  T  G  C  L  P  M  E  I  G  L  L  N  K  L  T  V  F  D  V  S  F  N  K  I  Q  G  S  L  P  S  T  V  S  K  M  R  S  V  E  E  L  N  V  A  H  N  K  L  T  G  V  I  P  A  S  I  C  Q  L  P  R  L  Q  N  F  T  Y  S  F  N  Y  F  T  G  E  A  P  V  C  A  A  T  R  S  G  D  G  Q  E  N  C  I  V  G  K  K  N  Q  R  S  A  K  E  C  S  S  D  D  A  K  P  Y  D  C  R  K  S  K  C  Y  S  P  F  A  T  S  P  S  T  K  P  K  P  K  P  K  P  R  G  P  P  P  P  T  W  K  S  S  G  S  H  N  K  R  S  P  P  P  P  K  S  T  P  L  P  P  P  A  P  Y  K  K  S  P  T  Y  Q  H  R  S  P  P  P  P  T </second_frame>
            <third_frame>   L  T  R  S  R  M  W  *  D  K  K  V  I  A  I  S  D  *  M  T  L  R  L  M  L  V  S  *  V  L  K  T  Q  G  F  A  M  L  I  S  R  C  S  I  G  K  Q  Q  C  F  L  I  L  L  T  S  Q  L  I  G  Q  V  Q  M  C  V  P  M  V  E  C  F  V  L  L  R  *  W  M  I  R  L  E  L  *  L  A  L  I  L  I  M  L  I  L  L  V  H  *  L  Q  N  L  V  F  L  Q  I  W  F  F  S  I  S  T  R  I  V  F  V  E  L  Y  Q  K  P  L  A  I  *  S  F  L  G  S  L  I  *  V  I  I  G  L  L  V  G  F  L  R  *  F  F  H  Y  L  L  *  S  F  W  I  *  G  L  M  T  L  K  D  Q  F  L  Q  D  F  S  I  K  I  W  M  R  C  F  *  M  T  I  D  S  V  L  A  S  R  R  T  W  V  T  L  L  F  R  F  L  C  L  L  I  T  I  L  E  G  V  F  P  Q  V  L  G  K  W  G  K  R  *  M  S  *  Y  *  *  M  I  T  S  L  G  V  C  Q  W  R  L  D  C  *  T  S  *  P  C  L  M  L  A  S  T  R  F  K  A  H  C  H  Q  L  *  A  K  *  G  V  W  R  N  *  M  W  L  T  T  S  L  L  G  L  Y  Q  L  A  F  A  N  F  L  G  C  K  T  L  R  I  P  S  I  T  S  P  G  K  L  Q  F  V  L  R  L  D  L  V  T  A  R  R  T  V  S  L  E  R  R  I  K  D  L  L  K  N  A  L  R  M  M  Q  N  R  M  I  V  G  N  P  S  V  I  A  L  L  L  H  L  L  R  Q  S  Q  N  Q  N  Q  S  Q  E  A  H  H  H  L  L  G  S  L  R  V  R  I  T  S  D  L  R  R  H  L  N  Q  L  L  F  L  H  Q  H  L  T  K  S  P  Q  P  I  N  I  E  V  H  H  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37568" stop="38836"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1269</number_coding_nucleotides>
                  <number_encoded_amino_acids>423</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYQISYVVGQEGDSDIGLDDIKANASKLSFENSRIRDAYIALQYWKTAMFSDPFNFTANWTGPNVCSYGGVFCAPSLMDDSIRVVAGIDLNHADIAGSLVAELGLLTDLVLFHLNSNRFCGVVPKTFSHLKLLRELDLSNNRFVGGFPKVVLSLPSLKFLDLRFNDFEGPVPSGLFDKDLDALFLNDNRFRFGIPENLGNSPVSVLVFANNDLGGCIPASIGKMGKTLNELILMNDNLTGCLPMEIGLLNKLTVFDVSFNKIQGSLPSTVSKMRSVEELNVAHNKLTGVIPASICQLPRLQNFTYSFNYFTGEAPVCAATRSGDGQENCIVGKKNQRSAKECSSDDAKPYDCRKSKCYSPFATSPSTKPKPKPKPRGPPPPTWKSSGSHNKRSPPPPKSTPLPPPAPYKKSPTYQHRSPPPPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="39086" PGL_stop="39643"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39086" e_stop="39643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="39086" e_stop="39643" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39086" stop="39643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39086" stop="39634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39315" stop="39624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACACCCAAAAACCCCATCACCACCAACACCATCATACGAGCATCCAAAAACACCATCACCACCAACACCATCATACGAGCATCCAAAAACCCCATCACCACCACCACCAACACCATCATACGAGCATCCACAACCCCAATCACCACCACCACCACCAACACCATCATACGAACACCCAAAAACTCCATCACACCCAACCCCACCTACCCCACCTTGTAACGAACCACCACCTCCACCTCCTAATTCACATTGGGAACCAAAACCATCACCACCATACACCTACTCATCACCACCACCTCCATCACCATCTCCTCCTCCTCCCACTTACTACTACTCATCACCACCGCCACCATCACCATCACCTCCCCCGCCCACTTACTCTTCTCCGCCACCACCACCACCATTTTACGAAAATATTCCTCTCCCACCGGTAATCGGAGTCTCCTACGCATCTCCACCACCACCAGTCATTCCATATTACTGAACAAGGGTTATCAATTAGCCTTTGATTTTCCATTATCAAAAAAAAAAGAATTCATTTTTTTTTATGAATTAT</gDNA_template>
            <first_frame> E  H  P  K  T  P  S  P  P  T  P  S  Y  E  H  P  K  T  P  S  P  P  T  P  S  Y  E  H  P  K  T  P  S  P  P  P  P  T  P  S  Y  E  H  P  Q  P  Q  S  P  P  P  P  P  T  P  S  Y  E  H  P  K  T  P  S  H  P  T  P  P  T  P  P  C  N  E  P  P  P  P  P  P  N  S  H  W  E  P  K  P  S  P  P  Y  T  Y  S  S  P  P  P  P  S  P  S  P  P  P  P  T  Y  Y  Y  S  S  P  P  P  P  S  P  S  P  P  P  P  T  Y  S  S  P  P  P  P  P  P  F  Y  E  N  I  P  L  P  P  V  I  G  V  S  Y  A  S  P  P  P  P  V  I  P  Y  Y  *  T  R  V  I  N  *  P  L  I  F  H  Y  Q  K  K  K  N  S  F  F  F  M  N  Y </first_frame>
            <second_frame>  N  T  Q  K  P  H  H  H  Q  H  H  H  T  S  I  Q  K  H  H  H  H  Q  H  H  H  T  S  I  Q  K  P  H  H  H  H  H  Q  H  H  H  T  S  I  H  N  P  N  H  H  H  H  H  Q  H  H  H  T  N  T  Q  K  L  H  H  T  Q  P  H  L  P  H  L  V  T  N  H  H  L  H  L  L  I  H  I  G  N  Q  N  H  H  H  H  T  P  T  H  H  H  H  L  H  H  H  L  L  L  L  P  L  T  T  T  H  H  H  R  H  H  H  H  H  L  P  R  P  L  T  L  L  R  H  H  H  H  H  F  T  K  I  F  L  S  H  R  *  S  E  S  P  T  H  L  H  H  H  Q  S  F  H  I  T  E  Q  G  L  S  I  S  L  *  F  S  I  I  K  K  K  R  I  H  F  F  L  *  I   </second_frame>
            <third_frame>   T  P  K  N  P  I  T  T  N  T  I  I  R  A  S  K  N  T  I  T  T  N  T  I  I  R  A  S  K  N  P  I  T  T  T  T  N  T  I  I  R  A  S  T  T  P  I  T  T  T  T  T  N  T  I  I  R  T  P  K  N  S  I  T  P  N  P  T  Y  P  T  L  *  R  T  T  T  S  T  S  *  F  T  L  G  T  K  T  I  T  T  I  H  L  L  I  T  T  T  S  I  T  I  S  S  S  S  H  L  L  L  L  I  T  T  A  T  I  T  I  T  S  P  A  H  L  L  F  S  A  T  T  T  T  I  L  R  K  Y  S  S  P  T  G  N  R  S  L  L  R  I  S  T  T  T  S  H  S  I  L  L  N  K  G  Y  Q  L  A  F  D  F  P  L  S  K  K  K  E  F  I  F  F  Y  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39086" stop="39571"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EHPKTPSPPTPSYEHPKTPSPPTPSYEHPKTPSPPPPTPSYEHPQPQSPPPPPTPSYEHPKTPSHPTPPTPPCNEPPPPPPNSHWEPKPSPPYTYSSPPPPSPSPPPPTYYYSSPPPPSPSPPPPTYSSPPPPPPFYENIPLPPVIGVSYASPPPPVIPYY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39087" stop="39521"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTQKPHHHQHHHTSIQKHHHHQHHHTSIQKPHHHHHQHHHTSIHNPNHHHHHQHHHTNTQKLHHTQPHLPHLVTNHHLHLLIHIGNQNHHHHTPTHHHHLHHHLLLLPLTTTHHHRHHHHHLPRPLTLLRHHHHHFTKIFLSHR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="46417" PGL_stop="46929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46417" e_stop="46929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="46417" e_stop="46929" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46417" stop="46892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46418" stop="46923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46431" stop="46929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46527" stop="46921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46673" stop="46921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226054" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTTGATAGCCTCTCAGTTTGAACCAGTTTGCAAAAACCCTAATTTCAGAGTTCGCTACGGTATAGGGTTCCGTCAAAGCTAACCAGTACACTGGCGGAACACCGAGCCATCGGCCAACCGGCAGAGAGCATCATCGCAAATGGACTTCGACGAGTACGATTATCTGGAGAAGACTGTGGAAGAGACCAACGGTACTTCTACGAAGAGCAAAGACAAAGACAATAACAGCAGCGCCGAGAAGGAGAAGAGCGAGAAAGGCTATCGTCGAAGGGAGAGAGATGGAAGTGAGGAATACGCCGACGACGACAATAGAGAGCGCCGGAGCAGCAAAAAGTCTCGCGGGGACGGCGAAAGCATCAGAGAGAAGGATAAGGAGAGAGATAGGGAAAGGTCATCGAGGCATCGGAGTAGGGAACGGGAATCTGAGAGGGACAAAGAAAGAAGCTCAAAAGACCGTGACCGTGACAGAGAGAAAAGGGAAAAGGAGAAAGAGAAAGAGAGGGATAGAGAC</gDNA_template>
            <first_frame> D  L  I  A  S  Q  F  E  P  V  C  K  N  P  N  F  R  V  R  Y  G  I  G  F  R  Q  S  *  P  V  H  W  R  N  T  E  P  S  A  N  R  Q  R  A  S  S  Q  M  D  F  D  E  Y  D  Y  L  E  K  T  V  E  E  T  N  G  T  S  T  K  S  K  D  K  D  N  N  S  S  A  E  K  E  K  S  E  K  G  Y  R  R  R  E  R  D  G  S  E  E  Y  A  D  D  D  N  R  E  R  R  S  S  K  K  S  R  G  D  G  E  S  I  R  E  K  D  K  E  R  D  R  E  R  S  S  R  H  R  S  R  E  R  E  S  E  R  D  K  E  R  S  S  K  D  R  D  R  D  R  E  K  R  E  K  E  K  E  K  E  R  D  R  D </first_frame>
            <second_frame>  T  *  *  P  L  S  L  N  Q  F  A  K  T  L  I  S  E  F  A  T  V  *  G  S  V  K  A  N  Q  Y  T  G  G  T  P  S  H  R  P  T  G  R  E  H  H  R  K  W  T  S  T  S  T  I  I  W  R  R  L  W  K  R  P  T  V  L  L  R  R  A  K  T  K  T  I  T  A  A  P  R  R  R  R  A  R  K  A  I  V  E  G  R  E  M  E  V  R  N  T  P  T  T  T  I  E  S  A  G  A  A  K  S  L  A  G  T  A  K  A  S  E  R  R  I  R  R  E  I  G  K  G  H  R  G  I  G  V  G  N  G  N  L  R  G  T  K  K  E  A  Q  K  T  V  T  V  T  E  R  K  G  K  R  R  K  R  K  R  G  I  E   </second_frame>
            <third_frame>   L  D  S  L  S  V  *  T  S  L  Q  K  P  *  F  Q  S  S  L  R  Y  R  V  P  S  K  L  T  S  T  L  A  E  H  R  A  I  G  Q  P  A  E  S  I  I  A  N  G  L  R  R  V  R  L  S  G  E  D  C  G  R  D  Q  R  Y  F  Y  E  E  Q  R  Q  R  Q  *  Q  Q  R  R  E  G  E  E  R  E  R  L  S  S  K  G  E  R  W  K  *  G  I  R  R  R  R  Q  *  R  A  P  E  Q  Q  K  V  S  R  G  R  R  K  H  Q  R  E  G  *  G  E  R  *  G  K  V  I  E  A  S  E  *  G  T  G  I  *  E  G  Q  R  K  K  L  K  R  P  *  P  *  Q  R  E  K  G  K  G  E  R  E  R  E  G  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46484" stop="46927"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSVKANQYTGGTPSHRPTGREHHRKWTSTSTIIWRRLWKRPTVLLRRAKTKTITAAPRRRRARKAIVEGREMEVRNTPTTTIESAGAAKSLAGTAKASERRIRREIGKGHRGIGVGNGNLRGTKKEAQKTVTVTERKGKRRKRKRGIE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46501" stop="46929"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVHWRNTEPSANRQRASSQMDFDEYDYLEKTVEETNGTSTKSKDKDNNSSAEKEKSEKGYRRRERDGSEEYADDDNRERRSSKKSRGDGESIREKDKERDRERSSRHRSRERESERDKERSSKDRDRDREKREKEKEKERDRD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="47047" PGL_stop="48634"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47047" e_stop="47120"/>
            <exon e_start="47649" e_stop="47746"/>
            <exon e_start="47885" e_stop="48634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47047" e_stop="47120" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="47121" i_stop="47648" i_length="528"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47649" e_stop="47746" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47747" i_stop="47884" i_length="138"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="47885" e_stop="48634" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47047" stop="47120"/>
              <exon start="47649" stop="47746"/>
              <exon start="47885" stop="48150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48150" stop="48634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304391" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAGAATCGAGCGAGAGCGAGAGAAAGAGATGTTGAGAGACAGCGAGCGTGACTTTGAATCACGGGACAGCAG : ATGGATTGTTTCCACATCTTAATGGGCTAACAATGCGGAAACCCTTCAAGGCTCGATTGAAGAAGTGGCTTATTCCCACATATATTGAGTATGATAAG : GTTGGCAAAGCATATGGTGTGAGGCTGTATCAGTTTTTCAACCTTTTCTTCTGTTCGAAGACGAAAATACATTAACCCTATATGTCATTCTTTTTTTGTGAAAGCAGGGAAAAGTCTCAAAATTTTGGTGCTGGGCAGCGTATAATGTCACAACACATACTGCATTCATATTCTTAACTTGAAGATGCTTCGAAAGTTCAAATTATCTTCTAGAATTTGCTCTATTTGTACTTGTTTTCTTTTTCTCTGGGAATGTTGCGTTTTGCTGGTGGTTGGATTTCTATTTGCTTCCTGTTTAGATATATAAGATGAAACTCATTGGGGGTCATTGAGCATTTATGAGGAGATCGTGCTATATTCACCTAAACAAGTAGATAAATGAAGTTTGCATTTTCTACTAGCCTATTGGTCTATCCAAAACTTTAGAATCTTGTTGACTTTTTCCACATTTGTCTCCAAAGGGCTTGCCTTGATGATCTATCCTGCTGCAGTAGCTACTCCATCTAATTGAGAAGAGGTGAAATTTAGCACAGCAAGGGAGGCTTTAGAGGATGATGATTCCTCATGTCATAATGTAATTTGTAGAATGTCCATGTATTTATGCAAGTTTGGTTGAGCTTTGATGTTTATAGTAGTTGATTACCTTCAATGTAGCAGGTGCTACATAAAGTACTTGAAATGAAAATCCACTCCCTACTATGTGCAACTTAAATTTTACAACCAGAGCCTCATATTTTTTCGTTCTTTACT</gDNA_template>
            <first_frame> S  R  I  E  R  E  R  E  K  E  M  L  R  D  S  E  R  D  F  E  S  R  D  S  R :   W  I  V  S  T  S  *  W  A  N  N  A  E  T  L  Q  G  S  I  E  E  V  A  Y  S  H  I  Y  *  V  *  *   : G  W  Q  S  I  W  C  E  A  V  S  V  F  Q  P  F  L  L  F  E  D  E  N  T  L  T  L  Y  V  I  L  F  L  *  K  Q  G  K  V  S  K  F  W  C  W  A  A  Y  N  V  T  T  H  T  A  F  I  F  L  T  *  R  C  F  E  S  S  N  Y  L  L  E  F  A  L  F  V  L  V  F  F  F  S  G  N  V  A  F  C  W  W  L  D  F  Y  L  L  P  V  *  I  Y  K  M  K  L  I  G  G  H  *  A  F  M  R  R  S  C  Y  I  H  L  N  K  *  I  N  E  V  C  I  F  Y  *  P  I  G  L  S  K  T  L  E  S  C  *  L  F  P  H  L  S  P  K  G  L  P  *  *  S  I  L  L  Q  *  L  L  H  L  I  E  K  R  *  N  L  A  Q  Q  G  R  L  *  R  M  M  I  P  H  V  I  M  *  F  V  E  C  P  C  I  Y  A  S  L  V  E  L  *  C  L  *  *  L  I  T  F  N  V  A  G  A  T  *  S  T  *  N  E  N  P  L  P  T  M  C  N  L  N  F  T  T  R  A  S  Y  F  F  V  L  Y  </first_frame>
            <second_frame>  R  E  S  S  E  S  E  R  K  R  C  *  E  T  A  S  V  T  L  N  H  G  T  A   : D  G  L  F  P  H  L  N  G  L  T  M  R  K  P  F  K  A  R  L  K  K  W  L  I  P  T  Y  I  E  Y  D  K  :  V  G  K  A  Y  G  V  R  L  Y  Q  F  F  N  L  F  F  C  S  K  T  K  I  H  *  P  Y  M  S  F  F  F  C  E  S  R  E  K  S  Q  N  F  G  A  G  Q  R  I  M  S  Q  H  I  L  H  S  Y  S  *  L  E  D  A  S  K  V  Q  I  I  F  *  N  L  L  Y  L  Y  L  F  S  F  S  L  G  M  L  R  F  A  G  G  W  I  S  I  C  F  L  F  R  Y  I  R  *  N  S  L  G  V  I  E  H  L  *  G  D  R  A  I  F  T  *  T  S  R  *  M  K  F  A  F  S  T  S  L  L  V  Y  P  K  L  *  N  L  V  D  F  F  H  I  C  L  Q  R  A  C  L  D  D  L  S  C  C  S  S  Y  S  I  *  L  R  R  G  E  I  *  H  S  K  G  G  F  R  G  *  *  F  L  M  S  *  C  N  L  *  N  V  H  V  F  M  Q  V  W  L  S  F  D  V  Y  S  S  *  L  P  S  M  *  Q  V  L  H  K  V  L  E  M  K  I  H  S  L  L  C  A  T  *  I  L  Q  P  E  P  H  I  F  S  F  F  T </second_frame>
            <third_frame>   E  N  R  A  R  A  R  E  R  D  V  E  R  Q  R  A  *  L  *  I  T  G  Q  Q  :  M  D  C  F  H  I  L  M  G  *  Q  C  G  N  P  S  R  L  D  *  R  S  G  L  F  P  H  I  L  S  M  I  R :   L  A  K  H  M  V  *  G  C  I  S  F  S  T  F  S  S  V  R  R  R  K  Y  I  N  P  I  C  H  S  F  F  V  K  A  G  K  S  L  K  I  L  V  L  G  S  V  *  C  H  N  T  Y  C  I  H  I  L  N  L  K  M  L  R  K  F  K  L  S  S  R  I  C  S  I  C  T  C  F  L  F  L  W  E  C  C  V  L  L  V  V  G  F  L  F  A  S  C  L  D  I  *  D  E  T  H  W  G  S  L  S  I  Y  E  E  I  V  L  Y  S  P  K  Q  V  D  K  *  S  L  H  F  L  L  A  Y  W  S  I  Q  N  F  R  I  L  L  T  F  S  T  F  V  S  K  G  L  A  L  M  I  Y  P  A  A  V  A  T  P  S  N  *  E  E  V  K  F  S  T  A  R  E  A  L  E  D  D  D  S  S  C  H  N  V  I  C  R  M  S  M  Y  L  C  K  F  G  *  A  L  M  F  I  V  V  D  Y  L  Q  C  S  R  C  Y  I  K  Y  L  K  *  K  S  T  P  Y  Y  V  Q  L  K  F  Y  N  Q  S  L  I  F  F  R  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47084" stop="47120"/>
                    <exon start="47649" stop="47746"/>
                    <exon start="47885" stop="47959"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETASVTLNHGTADGLFPHLNGLTMRKPFKARLKKWLIPTYIEYDKVGKAYGVRLYQFFNLFFCSKTKIH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="54420" PGL_stop="55879"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54420" e_stop="54518"/>
            <exon e_start="54639" e_stop="54727"/>
            <exon e_start="54912" e_stop="55026"/>
            <exon e_start="55586" e_stop="55879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54420" e_stop="54518" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54519" i_stop="54638" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54639" e_stop="54727" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.910" acc_prob="0.917">
            <gDNA_intron_boundary i_start="54728" i_stop="54911" i_length="184"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54912" e_stop="55026" e_length="115"/>
          </exon>
          <intron i_serial="3" don_prob="0.929" acc_prob="0.991">
            <gDNA_intron_boundary i_start="55027" i_stop="55585" i_length="559"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55586" e_stop="55879" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54420" stop="54518"/>
              <exon start="54639" stop="54727"/>
              <exon start="54912" stop="55026"/>
              <exon start="55586" stop="55789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279822" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54643" stop="54727"/>
              <exon start="54912" stop="55026"/>
              <exon start="55586" stop="55879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349755" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54644" stop="54727"/>
              <exon start="54912" stop="55026"/>
              <exon start="55586" stop="55879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357036" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54685" stop="54727"/>
              <exon start="54912" stop="55026"/>
              <exon start="55586" stop="55879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54687" stop="54727"/>
              <exon start="54912" stop="55026"/>
              <exon start="55586" stop="55858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54990" stop="55026"/>
              <exon start="55586" stop="55858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54991" stop="55026"/>
              <exon start="55586" stop="55858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218279" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGCTCCCAACACAACTCATTGCTTCCATGGCTCCCGAACCCATTGGGATACCCAGCGAGTGTTTGTTATTAAAAAACATGTTTGATCCTGCAACTGAG : ACGGATCCAGAATTTGATTTGGATATTAAAGATGATGTAAAGGAGGAATGTTCCAAGTATGGCAGGGTCAAGCATATCCATGTGGACAA : GAATACCTCTGGTTACGTGTACTTGCGGTTTGATAGTGTTGAAGCTGCATCTCGTGCTCAACAAGCCATGCACAAGAGATGGTTTGCTGGCAGGTCGATTTCAGCCATCTACTTG : CAACCGTATGAATATGATGCCAAGTTCAAAGGTACAGGCTAGATGGGAGCCATCTAAAATGTCTGAAGACTGCTGATTTGTTTATTGTAATTGCAATAGTGCAGCTGATTTTGTAATTTAAGTTGGGATACCAAAGACTCGTTAAAGTTCCTTATACCCGGACAGATGAGGTTATAGGTTGTGTAATTTTGACACAGTATTCTCATTTTAGTCAACTGTCACTTATGGAATTCATTTGTATTTTTTTTTGGCAACTTGATTGATGAGATTTAAGTGTGTTTGCTATTGGAAAAC</gDNA_template>
            <first_frame> M  L  P  T  Q  L  I  A  S  M  A  P  E  P  I  G  I  P  S  E  C  L  L  L  K  N  M  F  D  P  A  T  E  :  T  D  P  E  F  D  L  D  I  K  D  D  V  K  E  E  C  S  K  Y  G  R  V  K  H  I  H  V  D  K :   N  T  S  G  Y  V  Y  L  R  F  D  S  V  E  A  A  S  R  A  Q  Q  A  M  H  K  R  W  F  A  G  R  S  I  S  A  I  Y  L  :  Q  P  Y  E  Y  D  A  K  F  K  G  T  G  *  M  G  A  I  *  N  V  *  R  L  L  I  C  L  L  *  L  Q  *  C  S  *  F  C  N  L  S  W  D  T  K  D  S  L  K  F  L  I  P  G  Q  M  R  L  *  V  V  *  F  *  H  S  I  L  I  L  V  N  C  H  L  W  N  S  F  V  F  F  F  G  N  L  I  D  E  I  *  V  C  L  L  L  E  N </first_frame>
            <second_frame>  C  S  Q  H  N  S  L  L  P  W  L  P  N  P  L  G  Y  P  A  S  V  C  Y  *  K  T  C  L  I  L  Q  L  R :   R  I  Q  N  L  I  W  I  L  K  M  M  *  R  R  N  V  P  S  M  A  G  S  S  I  S  M  W  T   : R  I  P  L  V  T  C  T  C  G  L  I  V  L  K  L  H  L  V  L  N  K  P  C  T  R  D  G  L  L  A  G  R  F  Q  P  S  T  C :   N  R  M  N  M  M  P  S  S  K  V  Q  A  R  W  E  P  S  K  M  S  E  D  C  *  F  V  Y  C  N  C  N  S  A  A  D  F  V  I  *  V  G  I  P  K  T  R  *  S  S  L  Y  P  D  R  *  G  Y  R  L  C  N  F  D  T  V  F  S  F  *  S  T  V  T  Y  G  I  H  L  Y  F  F  L  A  T  *  L  M  R  F  K  C  V  C  Y  W  K   </second_frame>
            <third_frame>   A  P  N  T  T  H  C  F  H  G  S  R  T  H  W  D  T  Q  R  V  F  V  I  K  K  H  V  *  S  C  N  *   : D  G  S  R  I  *  F  G  Y  *  R  *  C  K  G  G  M  F  Q  V  W  Q  G  Q  A  Y  P  C  G  Q  :  E  Y  L  W  L  R  V  L  A  V  *  *  C  *  S  C  I  S  C  S  T  S  H  A  Q  E  M  V  C  W  Q  V  D  F  S  H  L  L   : A  T  V  *  I  *  C  Q  V  Q  R  Y  R  L  D  G  S  H  L  K  C  L  K  T  A  D  L  F  I  V  I  A  I  V  Q  L  I  L  *  F  K  L  G  Y  Q  R  L  V  K  V  P  Y  T  R  T  D  E  V  I  G  C  V  I  L  T  Q  Y  S  H  F  S  Q  L  S  L  M  E  F  I  C  I  F  F  W  Q  L  D  *  *  D  L  S  V  F  A  I  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54420" stop="54518"/>
                    <exon start="54639" stop="54727"/>
                    <exon start="54912" stop="55026"/>
                    <exon start="55586" stop="55627"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLPTQLIASMAPEPIGIPSECLLLKNMFDPATETDPEFDLDIKDDVKEECSKYGRVKHIHVDKNTSGYVYLRFDSVEAASRAQQAMHKRWFAGRSISAIYLQPYEYDAKFKGTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="62282" PGL_stop="63339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62282" e_stop="63339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="62282" e_stop="63339" e_length="1058"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62282" stop="62792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62593" stop="63101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62716" stop="63339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252340" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTACTCCGGCCAAACTCGGGAGTATAAAGTGGAAACCCGGTTTAGGGAGTCGGGTTTTAGGGTCGGGTGATTACGATGGAGTGGTTATGGAGTATGACCTAGAGAAAAAAATGCCCGTTTTCGAGCGTGATGAGCATGGTGGTAGACGGGTTTGGAGCATTGACTATTGTCAGTCGGATCCGGTTTTGGGTGCATCCGGATCCGATGACGGAACCATGCAAATGTGGGACCCGCGGTGCGGTGACAGTGGCAAGTGTTTAGCTATGGTACAACCTACCAAAGGGTATAGTACACCCGTGTGTTGCGTCGAATTTAATCCGTTCAAAGGTCCAATCGTAGCCGTTGGATGCGCTGACCGGAGGGTCTACGCGTATGATATGAGGAAAATGCTTGACCCACTCTTTGTCCTGGATGGACATGAGAAAGCAGTTACTTACATTAGATTTGTTGATGAACGTACTATTATTTCTTCGAGCATAGATGGTTGTTTAAAAATGTGGAATGCGGAGGACCAGAAGGTCCTTCGCACCTACAAGGGGCATAGTAATAGTAGGAGGTTTGTAGGGTTATCGGTATGGAAACCGGGTGGATTAATTTGTTGTGGCTCAGAAAATAATCAAGTTTTTGTATACGATAAAAGATGGGGTGAACCAATATGGATGTATGGACGCGAACCAAGACATGAGCATGGGTTCGTTAGTAGCGTATGTTGGCAACAAAAGGACGAAAATCAATGCACACTCGTAGCTGGAGATTCAGATGGTGTTTTACGAGTTTTTAATGGCAAGAGGAAATGACTATATATATATATTCACTCAAAATCCAGTAAAAGACGAAGTATCGGCAAAATGTGTAATATTATTTCATGAGAAGTCAATCGTGGCCAATACAACAAGGTAACACATTTTCTTTTTTCTTTTTCAATTATTCTTCTAATTAATACAGGAGTTAGAGGAATTGTTCACCATTTACATTTGTCTGAAATAGATAGATAGAGGATATGATTCGATAGAAAAATATCTGAAGAAATTTAAATTGCAAATGCTATATAGTTT</gDNA_template>
            <first_frame> F  V  L  R  P  N  S  G  V  *  S  G  N  P  V  *  G  V  G  F  *  G  R  V  I  T  M  E  W  L  W  S  M  T  *  R  K  K  C  P  F  S  S  V  M  S  M  V  V  D  G  F  G  A  L  T  I  V  S  R  I  R  F  W  V  H  P  D  P  M  T  E  P  C  K  C  G  T  R  G  A  V  T  V  A  S  V  *  L  W  Y  N  L  P  K  G  I  V  H  P  C  V  A  S  N  L  I  R  S  K  V  Q  S  *  P  L  D  A  L  T  G  G  S  T  R  M  I  *  G  K  C  L  T  H  S  L  S  W  M  D  M  R  K  Q  L  L  T  L  D  L  L  M  N  V  L  L  F  L  R  A  *  M  V  V  *  K  C  G  M  R  R  T  R  R  S  F  A  P  T  R  G  I  V  I  V  G  G  L  *  G  Y  R  Y  G  N  R  V  D  *  F  V  V  A  Q  K  I  I  K  F  L  Y  T  I  K  D  G  V  N  Q  Y  G  C  M  D  A  N  Q  D  M  S  M  G  S  L  V  A  Y  V  G  N  K  R  T  K  I  N  A  H  S  *  L  E  I  Q  M  V  F  Y  E  F  L  M  A  R  G  N  D  Y  I  Y  I  F  T  Q  N  P  V  K  D  E  V  S  A  K  C  V  I  L  F  H  E  K  S  I  V  A  N  T  T  R  *  H  I  F  F  F  L  F  Q  L  F  F  *  L  I  Q  E  L  E  E  L  F  T  I  Y  I  C  L  K  *  I  D  R  G  Y  D  S  I  E  K  Y  L  K  K  F  K  L  Q  M  L  Y  S   </first_frame>
            <second_frame>  L  Y  S  G  Q  T  R  E  Y  K  V  E  T  R  F  R  E  S  G  F  R  V  G  *  L  R  W  S  G  Y  G  V  *  P  R  E  K  N  A  R  F  R  A  *  *  A  W  W  *  T  G  L  E  H  *  L  L  S  V  G  S  G  F  G  C  I  R  I  R  *  R  N  H  A  N  V  G  P  A  V  R  *  Q  W  Q  V  F  S  Y  G  T  T  Y  Q  R  V  *  Y  T  R  V  L  R  R  I  *  S  V  Q  R  S  N  R  S  R  W  M  R  *  P  E  G  L  R  V  *  Y  E  E  N  A  *  P  T  L  C  P  G  W  T  *  E  S  S  Y  L  H  *  I  C  *  *  T  Y  Y  Y  F  F  E  H  R  W  L  F  K  N  V  E  C  G  G  P  E  G  P  S  H  L  Q  G  A  *  *  *  *  E  V  C  R  V  I  G  M  E  T  G  W  I  N  L  L  W  L  R  K  *  S  S  F  C  I  R  *  K  M  G  *  T  N  M  D  V  W  T  R  T  K  T  *  A  W  V  R  *  *  R  M  L  A  T  K  G  R  K  S  M  H  T  R  S  W  R  F  R  W  C  F  T  S  F  *  W  Q  E  E  M  T  I  Y  I  Y  S  L  K  I  Q  *  K  T  K  Y  R  Q  N  V  *  Y  Y  F  M  R  S  Q  S  W  P  I  Q  Q  G  N  T  F  S  F  F  F  F  N  Y  S  S  N  *  Y  R  S  *  R  N  C  S  P  F  T  F  V  *  N  R  *  I  E  D  M  I  R  *  K  N  I  *  R  N  L  N  C  K  C  Y  I  V  </second_frame>
            <third_frame>   C  T  P  A  K  L  G  S  I  K  W  K  P  G  L  G  S  R  V  L  G  S  G  D  Y  D  G  V  V  M  E  Y  D  L  E  K  K  M  P  V  F  E  R  D  E  H  G  G  R  R  V  W  S  I  D  Y  C  Q  S  D  P  V  L  G  A  S  G  S  D  D  G  T  M  Q  M  W  D  P  R  C  G  D  S  G  K  C  L  A  M  V  Q  P  T  K  G  Y  S  T  P  V  C  C  V  E  F  N  P  F  K  G  P  I  V  A  V  G  C  A  D  R  R  V  Y  A  Y  D  M  R  K  M  L  D  P  L  F  V  L  D  G  H  E  K  A  V  T  Y  I  R  F  V  D  E  R  T  I  I  S  S  S  I  D  G  C  L  K  M  W  N  A  E  D  Q  K  V  L  R  T  Y  K  G  H  S  N  S  R  R  F  V  G  L  S  V  W  K  P  G  G  L  I  C  C  G  S  E  N  N  Q  V  F  V  Y  D  K  R  W  G  E  P  I  W  M  Y  G  R  E  P  R  H  E  H  G  F  V  S  S  V  C  W  Q  Q  K  D  E  N  Q  C  T  L  V  A  G  D  S  D  G  V  L  R  V  F  N  G  K  R  K  *  L  Y  I  Y  I  H  S  K  S  S  K  R  R  S  I  G  K  M  C  N  I  I  S  *  E  V  N  R  G  Q  Y  N  K  V  T  H  F  L  F  S  F  S  I  I  L  L  I  N  T  G  V  R  G  I  V  H  H  L  H  L  S  E  I  D  R  *  R  I  *  F  D  R  K  I  S  E  E  I  *  I  A  N  A  I  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62284" stop="63081"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTPAKLGSIKWKPGLGSRVLGSGDYDGVVMEYDLEKKMPVFERDEHGGRRVWSIDYCQSDPVLGASGSDDGTMQMWDPRCGDSGKCLAMVQPTKGYSTPVCCVEFNPFKGPIVAVGCADRRVYAYDMRKMLDPLFVLDGHEKAVTYIRFVDERTIISSSIDGCLKMWNAEDQKVLRTYKGHSNSRRFVGLSVWKPGGLICCGSENNQVFVYDKRWGEPIWMYGREPRHEHGFVSSVCWQQKDENQCTLVAGDSDGVLRVFNGKRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="77758" PGL_stop="66516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77758" e_stop="77456"/>
            <exon e_start="75808" e_stop="75761"/>
            <exon e_start="74174" e_stop="74109"/>
            <exon e_start="73676" e_stop="73624"/>
            <exon e_start="72732" e_stop="72667"/>
            <exon e_start="71660" e_stop="71586"/>
            <exon e_start="69950" e_stop="69876"/>
            <exon e_start="69604" e_stop="69526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77758" e_stop="77456" e_length="303"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77455" i_stop="75809" i_length="1647"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75808" e_stop="75761" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.909" acc_prob="0.982">
            <gDNA_intron_boundary i_start="75760" i_stop="74175" i_length="1586"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74174" e_stop="74109" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.987">
            <gDNA_intron_boundary i_start="74108" i_stop="73677" i_length="432"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73676" e_stop="73624" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="73623" i_stop="72733" i_length="891"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72732" e_stop="72667" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.978">
            <gDNA_intron_boundary i_start="72666" i_stop="71661" i_length="1006"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71660" e_stop="71586" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="71585" i_stop="69951" i_length="1635"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69950" e_stop="69876" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.758" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69875" i_stop="69605" i_length="271"/>
          </intron>
          <exon e_serial="8" e_score="0.975">
            <gDNA_exon_boundary e_start="69604" e_stop="69526" e_length="79"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77758" stop="77456"/>
              <exon start="75808" stop="75792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77757" stop="77456"/>
              <exon start="75808" stop="75761"/>
              <exon start="74174" stop="74109"/>
              <exon start="73676" stop="73624"/>
              <exon start="72732" stop="72667"/>
              <exon start="71660" stop="71586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77551" stop="77456"/>
              <exon start="75808" stop="75761"/>
              <exon start="74174" stop="74109"/>
              <exon start="73676" stop="73624"/>
              <exon start="72732" stop="72667"/>
              <exon start="71660" stop="71586"/>
              <exon start="69950" stop="69876"/>
              <exon start="69604" stop="69526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAGCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCG : GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG : ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG : GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT : GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG : GAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAG : GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG : GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAGGTATGTAT</gDNA_template>
            <first_frame> *  S  Q  I  Y  G  L  Q  K  L  T  Y  K  H  Q  C  T  M  Y  N  I  S  V  L  K  N  C  K  T  S  L  L  V  L  P  F  L  H  F  T  N  T  P  K  T  V  Q  S  T  I  F  *  N  Q  N  *  K  P  K  Q  L  I  S  L  F  F  S  S  D  F  Y  G  S  G  N  F  C  I  K  R  W  G  Q  R  *  E  L  F  S  G  C  L  H  L  S  P  V  E  *  F  S  :  E  L  *  F  N  *  H  L  F  V  G  W  R  T  H  W  :  T  E  N  F  L  L  V  E  S  M  Q  V  *  L  A  A  I  F  R  *  Q  E  :  E  S  L  I  G  L  M  T  K  M  P  *  H  C  V  *  D  M :   *  S  L  K  *  L  V  G  N  Q  E  L  Y  Y  F  T  T  S  *  V  Q  R :   N  V  I  I  L  D  R  L  P  F  L  A  F  M  F  P  L  L  *  M  Q  K  L  G  R :   E  L  R  V  M  S  E  Q  V  L  V  C  F  *  T  L  M  R  G  S  I  P  *  Y  R :   Q  L  K  N  E  F  L  C  I  L  K  Y  Q  *  K  M  G  N  S  F  K  C  *  G  M  Y </first_frame>
            <second_frame>  R  A  K  S  M  D  Y  K  S  *  R  T  N  I  N  A  Q  C  T  I  Y  L  Y  *  K  I  A  K  R  L  S  W  F  Y  H  F  F  T  L  Q  I  L  P  K  Q  S  N  R  Q  F  S  K  I  K  I  E  N  Q  N  N  *  F  L  Y  F  S  V  Q  I  S  T  E  V  E  I  F  A  L  K  D  G  D  N  D  E  N  C  F  R  A  A  Y  T  C  H  L  W  N  D  S  R :   S  F  N  S  I  S  I  Y  S  *  D  G  G  L  T  G :   Q  R  I  F  F  W  W  K  A  C  K  F  S  W  Q  Q  F  S  V  S  K  R :   N  L  *  L  A  S  *  Q  R  C  H  S  T  A  C  R  I   : C  E  A  *  N  N  *  L  E  T  K  N  C  I  I  S  Q  L  L  E  C  R   : G  M  *  L  S  *  I  D  C  H  S  S  P  S  C  F  H  C  C  R  C  K  N  W  E   : G  S  *  E  *  C  Q  N  K  F  W  Y  V  S  E  P  *  *  E  E  V  S  H  D  T   : G  N  *  K  T  N  F  C  V  F  S  N  T  S  R  K  W  G  T  H  S  S  V  K  V  C   </second_frame>
            <third_frame>   E  P  N  L  W  T  T  K  V  D  V  Q  T  S  M  H  N  V  Q  Y  I  C  I  E  K  L  Q  N  V  S  L  G  S  T  I  S  S  L  Y  K  Y  S  Q  N  S  P  I  D  N  F  L  K  S  K  L  K  T  K  T  T  N  F  S  I  F  Q  F  R  F  L  R  K  W  K  F  L  H  *  K  M  G  T  T  M  R  I  V  F  G  L  L  T  L  V  T  C  G  M  I  L   : G  A  L  I  Q  L  A  F  I  R  R  M  E  D  S  L   : D  R  E  F  S  F  G  G  K  H  A  S  L  A  G  S  N  F  P  L  A  R   : G  I  S  N  W  P  H  D  K  D  A  I  A  L  R  V  G  Y  :  V  K  P  E  I  I  S  W  K  P  R  I  V  L  F  H  N  F  L  S  A  E  :  E  C  D  Y  L  R  S  I  A  I  P  R  L  H  V  S  T  V  V  D  A  K  T  G  K  :  G  V  K  S  D  V  R  T  S  S  G  M  F  L  N  P  D  E  R  K  Y  P  M  I  Q  :  A  I  E  K  R  I  S  V  Y  S  Q  I  P  V  E  N  G  E  L  I  Q  V  L  R  Y  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77522" stop="77456"/>
                    <exon start="75808" stop="75761"/>
                    <exon start="74174" stop="74109"/>
                    <exon start="73676" stop="73624"/>
                    <exon start="72732" stop="72667"/>
                    <exon start="71660" stop="71586"/>
                    <exon start="69950" stop="69876"/>
                    <exon start="69604" stop="69527"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGTTMRIVFGLLTLVTCGMILGALIQLAFIRRMEDSLDREFSFGGKHASLAGSNFPLARGISNWPHDKDAIALRVGYVKPEIISWKPRIVLFHNFLSAEECDYLRSIAIPRLHVSTVVDAKTGKGVKSDVRTSSGMFLNPDERKYPMIQAIEKRISVYSQIPVENGELIQVLRYV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77756" stop="77523"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPNLWTTKVDVQTSMHNVQYICIEKLQNVSLGSTISSLYKYSQNSPIDNFLKSKLKTKTTNFSIFQFRFLRKWKFLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77758" e_stop="77456"/>
            <exon e_start="75808" e_stop="75761"/>
            <exon e_start="74174" e_stop="74109"/>
            <exon e_start="73676" e_stop="73624"/>
            <exon e_start="72732" e_stop="72667"/>
            <exon e_start="71660" e_stop="71586"/>
            <exon e_start="69950" e_stop="69876"/>
            <exon e_start="69604" e_stop="69534"/>
            <exon e_start="69440" e_stop="69389"/>
            <exon e_start="69287" e_stop="69198"/>
            <exon e_start="67713" e_stop="67621"/>
            <exon e_start="66725" e_stop="66516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.491" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.886"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77758" e_stop="77456" e_length="303"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77455" i_stop="75809" i_length="1647"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75808" e_stop="75761" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.909" acc_prob="0.982">
            <gDNA_intron_boundary i_start="75760" i_stop="74175" i_length="1586"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74174" e_stop="74109" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.987">
            <gDNA_intron_boundary i_start="74108" i_stop="73677" i_length="432"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73676" e_stop="73624" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="73623" i_stop="72733" i_length="891"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72732" e_stop="72667" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.978">
            <gDNA_intron_boundary i_start="72666" i_stop="71661" i_length="1006"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="71660" e_stop="71586" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="71585" i_stop="69951" i_length="1635"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69950" e_stop="69876" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.758" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69875" i_stop="69605" i_length="271"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69604" e_stop="69534" e_length="71"/>
          </exon>
          <intron i_serial="8" don_prob="0.803" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69533" i_stop="69441" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69440" e_stop="69389" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69388" i_stop="69288" i_length="101"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="69287" e_stop="69198" e_length="90"/>
          </exon>
          <intron i_serial="10" don_prob="0.971" acc_prob="0.960">
            <gDNA_intron_boundary i_start="69197" i_stop="67714" i_length="1484"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67713" e_stop="67621" e_length="93"/>
          </exon>
          <intron i_serial="11" don_prob="0.491" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67620" i_stop="66726" i_length="895"/>
          </intron>
          <exon e_serial="12" e_score="0.886">
            <gDNA_exon_boundary e_start="66725" e_stop="66516" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77758" stop="77456"/>
              <exon start="75808" stop="75792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77757" stop="77456"/>
              <exon start="75808" stop="75761"/>
              <exon start="74174" stop="74109"/>
              <exon start="73676" stop="73624"/>
              <exon start="72732" stop="72667"/>
              <exon start="71660" stop="71586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77480" stop="77456"/>
              <exon start="75808" stop="75761"/>
              <exon start="74174" stop="74109"/>
              <exon start="73676" stop="73624"/>
              <exon start="72732" stop="72667"/>
              <exon start="71660" stop="71586"/>
              <exon start="69950" stop="69876"/>
              <exon start="69604" stop="69534"/>
              <exon start="69440" stop="69389"/>
              <exon start="69287" stop="69198"/>
              <exon start="67713" stop="67621"/>
              <exon start="66725" stop="66516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699584" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAGCCAAATCTATGGACTACAAAAGTTGACGTACAAACATCAATGCACAATGTACAATATATCTGTATTGAAAAATTGCAAAACGTCTCTCTTGGTTCTACCATTTCTTCACTTTACAAATACTCCCAAAACAGTCCAATCGACAATTTTCTAAAATCAAAATTGAAAACCAAAACAACTAATTTCTCTATTTTTCAGTTCAGATTTCTACGGAAGTGGAAATTTTTGCATTAAAAGATGGGGACAACGATGAGAATTGTTTTCGGGCTGCTTACACTTGTCACCTGTGGAATGATTCTCG : GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG : ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG : GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT : GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG : GAATGTGATTATCTTAGATCGATTGCCATTCCTCGCCTTCATGTTTCCACTGTTGTAGATGCAAAAACTGGGAAG : GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG : GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAG : GTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGT : TTTAATGTGAAGCGTGGAGGTCAAAGAATAGCTACAATGCTCATGTATTTGAGCGACAATGTGGAGGGGGGAGAAACATACTTTCCTATG : GCTGGCACTGGTAAATGTAGCTGTGGCGGCAAAATGATCCAAGGGTTATGTGTAAAACCTACGAAAGGAGATGCTGTTCTTTTTTGGAGTATG : GGGCTTGATGGACAATCTGACCCTGATAGTCTACATGGAGGATGTGAAGTACTCTCAGGAGAGAAATGGTCAGCTACTAAATGGATGAGGCAAAGAACTGTATCCTAAATTCCTCATACATTTCTTCTTCTTTTTTCTTTTTTTTTTCGTTCTATCTATATTGTATCTTGATAGGAAAAAAAAAGGAGTTACATGACTTTTGTAAAATTA</gDNA_template>
            <first_frame> *  S  Q  I  Y  G  L  Q  K  L  T  Y  K  H  Q  C  T  M  Y  N  I  S  V  L  K  N  C  K  T  S  L  L  V  L  P  F  L  H  F  T  N  T  P  K  T  V  Q  S  T  I  F  *  N  Q  N  *  K  P  K  Q  L  I  S  L  F  F  S  S  D  F  Y  G  S  G  N  F  C  I  K  R  W  G  Q  R  *  E  L  F  S  G  C  L  H  L  S  P  V  E  *  F  S  :  E  L  *  F  N  *  H  L  F  V  G  W  R  T  H  W  :  T  E  N  F  L  L  V  E  S  M  Q  V  *  L  A  A  I  F  R  *  Q  E  :  E  S  L  I  G  L  M  T  K  M  P  *  H  C  V  *  D  M :   *  S  L  K  *  L  V  G  N  Q  E  L  Y  Y  F  T  T  S  *  V  Q  R :   N  V  I  I  L  D  R  L  P  F  L  A  F  M  F  P  L  L  *  M  Q  K  L  G  R :   E  L  R  V  M  S  E  Q  V  L  V  C  F  *  T  L  M  R  G  S  I  P  *  Y  R :   Q  L  K  N  E  F  L  C  I  L  K  Y  Q  *  K  M  G  N  S  F  K  C  *   : G  M  K  R  I  S  S  I  E  P  I  M  T  I  S  L  I  V :   L  M  *  S  V  E  V  K  E  *  L  Q  C  S  C  I  *  A  T  M  W  R  G  E  K  H  T  F  L  W :   L  A  L  V  N  V  A  V  A  A  K  *  S  K  G  Y  V  *  N  L  R  K  E  M  L  F  F  F  G  V  W :   G  L  M  D  N  L  T  L  I  V  Y  M  E  D  V  K  Y  S  Q  E  R  N  G  Q  L  L  N  G  *  G  K  E  L  Y  P  K  F  L  I  H  F  F  F  F  F  L  F  F  F  V  L  S  I  L  Y  L  D  R  K  K  K  G  V  T  *  L  L  *  N   </first_frame>
            <second_frame>  R  A  K  S  M  D  Y  K  S  *  R  T  N  I  N  A  Q  C  T  I  Y  L  Y  *  K  I  A  K  R  L  S  W  F  Y  H  F  F  T  L  Q  I  L  P  K  Q  S  N  R  Q  F  S  K  I  K  I  E  N  Q  N  N  *  F  L  Y  F  S  V  Q  I  S  T  E  V  E  I  F  A  L  K  D  G  D  N  D  E  N  C  F  R  A  A  Y  T  C  H  L  W  N  D  S  R :   S  F  N  S  I  S  I  Y  S  *  D  G  G  L  T  G :   Q  R  I  F  F  W  W  K  A  C  K  F  S  W  Q  Q  F  S  V  S  K  R :   N  L  *  L  A  S  *  Q  R  C  H  S  T  A  C  R  I   : C  E  A  *  N  N  *  L  E  T  K  N  C  I  I  S  Q  L  L  E  C  R   : G  M  *  L  S  *  I  D  C  H  S  S  P  S  C  F  H  C  C  R  C  K  N  W  E   : G  S  *  E  *  C  Q  N  K  F  W  Y  V  S  E  P  *  *  E  E  V  S  H  D  T   : G  N  *  K  T  N  F  C  V  F  S  N  T  S  R  K  W  G  T  H  S  S  V  K  :  V  *  K  E  S  V  L  *  S  P  S  *  L  F  L  *  *   : F  *  C  E  A  W  R  S  K  N  S  Y  N  A  H  V  F  E  R  Q  C  G  G  G  R  N  I  L  S  Y   : G  W  H  W  *  M  *  L  W  R  Q  N  D  P  R  V  M  C  K  T  Y  E  R  R  C  C  S  F  L  E  Y   : G  A  *  W  T  I  *  P  *  *  S  T  W  R  M  *  S  T  L  R  R  E  M  V  S  Y  *  M  D  E  A  K  N  C  I  L  N  S  S  Y  I  S  S  S  F  F  F  F  F  S  F  Y  L  Y  C  I  L  I  G  K  K  K  E  L  H  D  F  C  K  I  </second_frame>
            <third_frame>   E  P  N  L  W  T  T  K  V  D  V  Q  T  S  M  H  N  V  Q  Y  I  C  I  E  K  L  Q  N  V  S  L  G  S  T  I  S  S  L  Y  K  Y  S  Q  N  S  P  I  D  N  F  L  K  S  K  L  K  T  K  T  T  N  F  S  I  F  Q  F  R  F  L  R  K  W  K  F  L  H  *  K  M  G  T  T  M  R  I  V  F  G  L  L  T  L  V  T  C  G  M  I  L   : G  A  L  I  Q  L  A  F  I  R  R  M  E  D  S  L   : D  R  E  F  S  F  G  G  K  H  A  S  L  A  G  S  N  F  P  L  A  R   : G  I  S  N  W  P  H  D  K  D  A  I  A  L  R  V  G  Y  :  V  K  P  E  I  I  S  W  K  P  R  I  V  L  F  H  N  F  L  S  A  E  :  E  C  D  Y  L  R  S  I  A  I  P  R  L  H  V  S  T  V  V  D  A  K  T  G  K  :  G  V  K  S  D  V  R  T  S  S  G  M  F  L  N  P  D  E  R  K  Y  P  M  I  Q  :  A  I  E  K  R  I  S  V  Y  S  Q  I  P  V  E  N  G  E  L  I  Q  V  L  R :   Y  E  K  N  Q  F  Y  R  A  H  H  D  Y  F  S  D  S  :  F  N  V  K  R  G  G  Q  R  I  A  T  M  L  M  Y  L  S  D  N  V  E  G  G  E  T  Y  F  P  M  :  A  G  T  G  K  C  S  C  G  G  K  M  I  Q  G  L  C  V  K  P  T  K  G  D  A  V  L  F  W  S  M  :  G  L  D  G  Q  S  D  P  D  S  L  H  G  G  C  E  V  L  S  G  E  K  W  S  A  T  K  W  M  R  Q  R  T  V  S  *  I  P  H  T  F  L  L  L  F  S  F  F  F  R  S  I  Y  I  V  S  *  *  E  K  K  R  S  Y  M  T  F  V  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77522" stop="77456"/>
                    <exon start="75808" stop="75761"/>
                    <exon start="74174" stop="74109"/>
                    <exon start="73676" stop="73624"/>
                    <exon start="72732" stop="72667"/>
                    <exon start="71660" stop="71586"/>
                    <exon start="69950" stop="69876"/>
                    <exon start="69604" stop="69534"/>
                    <exon start="69440" stop="69389"/>
                    <exon start="69287" stop="69198"/>
                    <exon start="67713" stop="67621"/>
                    <exon start="66725" stop="66618"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGTTMRIVFGLLTLVTCGMILGALIQLAFIRRMEDSLDREFSFGGKHASLAGSNFPLARGISNWPHDKDAIALRVGYVKPEIISWKPRIVLFHNFLSAEECDYLRSIAIPRLHVSTVVDAKTGKGVKSDVRTSSGMFLNPDERKYPMIQAIEKRISVYSQIPVENGELIQVLRYEKNQFYRAHHDYFSDSFNVKRGGQRIATMLMYLSDNVEGGETYFPMAGTGKCSCGGKMIQGLCVKPTKGDAVLFWSMGLDGQSDPDSLHGGCEVLSGEKWSATKWMRQRTVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77756" stop="77523"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPNLWTTKVDVQTSMHNVQYICIEKLQNVSLGSTISSLYKYSQNSPIDNFLKSKLKTKTTNFSIFQFRFLRKWKFLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="77468" e_stop="77456"/>
            <exon e_start="77399" e_stop="77125"/>
            <exon e_start="75808" e_stop="75761"/>
            <exon e_start="74174" e_stop="74109"/>
            <exon e_start="73676" e_stop="73624"/>
            <exon e_start="72732" e_stop="72667"/>
            <exon e_start="69950" e_stop="69876"/>
            <exon e_start="69604" e_stop="69534"/>
            <exon e_start="69440" e_stop="69389"/>
            <exon e_start="69287" e_stop="69282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.000" e_score="0.692"/>
          <exon-intron don_prob="0.965" acc_prob="0.998" e_score="0.982"/>
          <exon-intron don_prob="0.909" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.692">
            <gDNA_exon_boundary e_start="77468" e_stop="77456" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77455" i_stop="77400" i_length="56"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="77399" e_stop="77125" e_length="275"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77124" i_stop="75809" i_length="1316"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75808" e_stop="75761" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="0.982">
            <gDNA_intron_boundary i_start="75760" i_stop="74175" i_length="1586"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74174" e_stop="74109" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.987">
            <gDNA_intron_boundary i_start="74108" i_stop="73677" i_length="432"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73676" e_stop="73624" e_length="53"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.994">
            <gDNA_intron_boundary i_start="73623" i_stop="72733" i_length="891"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72732" e_stop="72667" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.985">
            <gDNA_intron_boundary i_start="72666" i_stop="69951" i_length="2716"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69950" e_stop="69876" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.758" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69875" i_stop="69605" i_length="271"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69604" e_stop="69534" e_length="71"/>
          </exon>
          <intron i_serial="8" don_prob="0.803" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69533" i_stop="69441" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="69440" e_stop="69389" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69388" i_stop="69288" i_length="101"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="69287" e_stop="69282" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77468" stop="77456"/>
              <exon start="77399" stop="77125"/>
              <exon start="75808" stop="75761"/>
              <exon start="74174" stop="74109"/>
              <exon start="73676" stop="73624"/>
              <exon start="72732" stop="72667"/>
              <exon start="69950" stop="69876"/>
              <exon start="69604" stop="69534"/>
              <exon start="69440" stop="69389"/>
              <exon start="69287" stop="69282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATGATTCTCG : CGTTTTTTTTTTTAATTTTTTGATTTGTCTCCTCCGGCATTTGCCGTTTCGATCATAGTAATCATCAGTGGTGTTGATTACTTGATTGGATTGGAGTTAATCTGGACTAATTAAAAACCCCATGTGGAAAAAAAGGGAAAAAATTTAAATGGTGATACATATGTGTGTTTGTTTTGGAAATGGAGGTTTAAACTTTAAAGATTGAATCTTTAGGGGTGGGGTGGTGGAGGGGGTACATGGGGTTTGATCTGTGATGATCATTCTTGATTAGGATG : GAGCTTTAATTCAATTAGCATTTATTCGTAGGATGGAGGACTCACTGG : ACAGAGAATTTTCTTTTGGTGGAAAGCATGCAAGTTTAGCTGGCAGCAATTTTCCGTTAGCAAGAG : GAATCTCTAATTGGCCTCATGACAAAGATGCCATAGCACTGCGTGTAGGATAT : GTGAAGCCTGAAATAATTAGTTGGAAACCAAGAATTGTATTATTTCACAACTTCTTGAGTGCAGAG : GGAGTTAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAACCCTGATGAGAGGAAGTATCCCATGATACAG : GCAATTGAAAAACGAATTTCTGTGTATTCTCAAATACCAGTAGAAAATGGGGAACTCATTCAAGTGTTAAG : GTATGAAAAGAATCAGTTCTATAGAGCCCATCATGACTATTTCTCTGATAGT : TTTAAT</gDNA_template>
            <first_frame> G  M  I  L   : A  F  F  F  L  I  F  *  F  V  S  S  G  I  C  R  F  D  H  S  N  H  Q  W  C  *  L  L  D  W  I  G  V  N  L  D  *  L  K  T  P  C  G  K  K  G  K  K  F  K  W  *  Y  I  C  V  F  V  L  E  M  E  V  *  T  L  K  I  E  S  L  G  V  G  W  W  R  G  Y  M  G  F  D  L  *  *  S  F  L  I  R  M  :  E  L  *  F  N  *  H  L  F  V  G  W  R  T  H  W  :  T  E  N  F  L  L  V  E  S  M  Q  V  *  L  A  A  I  F  R  *  Q  E  :  E  S  L  I  G  L  M  T  K  M  P  *  H  C  V  *  D  M :   *  S  L  K  *  L  V  G  N  Q  E  L  Y  Y  F  T  T  S  *  V  Q  R :   E  L  R  V  M  S  E  Q  V  L  V  C  F  *  T  L  M  R  G  S  I  P  *  Y  R :   Q  L  K  N  E  F  L  C  I  L  K  Y  Q  *  K  M  G  N  S  F  K  C  *   : G  M  K  R  I  S  S  I  E  P  I  M  T  I  S  L  I  V :   L   </first_frame>
            <second_frame>  E  *  F  S  :  R  F  F  F  *  F  F  D  L  S  P  P  A  F  A  V  S  I  I  V  I  I  S  G  V  D  Y  L  I  G  L  E  L  I  W  T  N  *  K  P  H  V  E  K  K  G  K  N  L  N  G  D  T  Y  V  C  L  F  W  K  W  R  F  K  L  *  R  L  N  L  *  G  W  G  G  G  G  G  T  W  G  L  I  C  D  D  H  S  *  L  G  W :   S  F  N  S  I  S  I  Y  S  *  D  G  G  L  T  G :   Q  R  I  F  F  W  W  K  A  C  K  F  S  W  Q  Q  F  S  V  S  K  R :   N  L  *  L  A  S  *  Q  R  C  H  S  T  A  C  R  I   : C  E  A  *  N  N  *  L  E  T  K  N  C  I  I  S  Q  L  L  E  C  R   : G  S  *  E  *  C  Q  N  K  F  W  Y  V  S  E  P  *  *  E  E  V  S  H  D  T   : G  N  *  K  T  N  F  C  V  F  S  N  T  S  R  K  W  G  T  H  S  S  V  K  :  V  *  K  E  S  V  L  *  S  P  S  *  L  F  L  *  *   : F  *  </second_frame>
            <third_frame>   N  D  S  R :   V  F  F  F  N  F  L  I  C  L  L  R  H  L  P  F  R  S  *  *  S  S  V  V  L  I  T  *  L  D  W  S  *  S  G  L  I  K  N  P  M  W  K  K  R  E  K  I  *  M  V  I  H  M  C  V  C  F  G  N  G  G  L  N  F  K  D  *  I  F  R  G  G  V  V  E  G  V  H  G  V  *  S  V  M  I  I  L  D  *  D   : G  A  L  I  Q  L  A  F  I  R  R  M  E  D  S  L   : D  R  E  F  S  F  G  G  K  H  A  S  L  A  G  S  N  F  P  L  A  R   : G  I  S  N  W  P  H  D  K  D  A  I  A  L  R  V  G  Y  :  V  K  P  E  I  I  S  W  K  P  R  I  V  L  F  H  N  F  L  S  A  E  :  G  V  K  S  D  V  R  T  S  S  G  M  F  L  N  P  D  E  R  K  Y  P  M  I  Q  :  A  I  E  K  R  I  S  V  Y  S  Q  I  P  V  E  N  G  E  L  I  Q  V  L  R :   Y  E  K  N  Q  F  Y  R  A  H  H  D  Y  F  S  D  S  :  F  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77128" stop="77125"/>
                    <exon start="75808" stop="75761"/>
                    <exon start="74174" stop="74109"/>
                    <exon start="73676" stop="73624"/>
                    <exon start="72732" stop="72667"/>
                    <exon start="69950" stop="69876"/>
                    <exon start="69604" stop="69534"/>
                    <exon start="69440" stop="69389"/>
                    <exon start="69287" stop="69282"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGALIQLAFIRRMEDSLDREFSFGGKHASLAGSNFPLARGISNWPHDKDAIALRVGYVKPEIISWKPRIVLFHNFLSAEGVKSDVRTSSGMFLNPDERKYPMIQAIEKRISVYSQIPVENGELIQVLRYEKNQFYRAHHDYFSDSFN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="86935" PGL_stop="91784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86935" e_stop="87090"/>
            <exon e_start="88586" e_stop="88672"/>
            <exon e_start="90012" e_stop="90103"/>
            <exon e_start="90263" e_stop="90371"/>
            <exon e_start="90454" e_stop="90489"/>
            <exon e_start="91299" e_stop="91385"/>
            <exon e_start="91466" e_stop="91784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.934" e_score="0.942"/>
          <exon-intron don_prob="0.983" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.855" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.465" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="86935" e_stop="87090" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.934">
            <gDNA_intron_boundary i_start="87091" i_stop="88585" i_length="1495"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88586" e_stop="88672" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.802">
            <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90012" e_stop="90103" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.799" acc_prob="0.855">
            <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90263" e_stop="90371" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.945">
            <gDNA_intron_boundary i_start="90372" i_stop="90453" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90454" e_stop="90489" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90490" i_stop="91298" i_length="809"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91299" e_stop="91385" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.465">
            <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="91466" e_stop="91784" e_length="319"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86935" stop="87090"/>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86973" stop="87090"/>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86991" stop="87090"/>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87006" stop="87090"/>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87022" stop="87090"/>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87026" stop="87090"/>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87027" stop="87090"/>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87037" stop="87090"/>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87048" stop="87090"/>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88605" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88623" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90275" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90321" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90358" stop="90371"/>
              <exon start="90454" stop="90489"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCCAAATCTTAGAAAACACAAACTAGTAAAGAAAAAAATACAAGACTGTACAGAAAATAGAGTATATAGAAATAATAGGAATAGGAACAAAAAATCCCCCAACTCCAAAGAAGAAGAAGGAGGAGTTGTTTGTACCTTGGATCTCCAGCCATG : ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG : GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG : ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT : GTATGTGAGCTAGACTTAATTTTCAATTTTCACAAG : GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG : GATTCTTTGGTTGAGGCTGCCAAAGAAGAGGCAAGTTCTCTTAGTAACATCATTGCACAGGCTACTAAATGAGAGTATGCAGGCAGCGTTCAAGTGTTTTGAGTGCATTTATGTTTTTCAGCTGTAATCCAAACATTATTTCTTCTTTCAATGTTTTCGTTTAACTTTGTAGTTATAAATAGGAATTTCTTTGTAGTAATGAGTTTTCTTCTCAACCTAAGCGTGGTGTTTACTTCACTCTGTTGCCTAAAAACTGCTGGTCATATATATAGTACTTGTTCCTCTGGTGGAGCTAGCTTATAACGCATCTCTCAAAACC</gDNA_template>
            <first_frame> K  S  K  S  *  K  T  Q  T  S  K  E  K  N  T  R  L  Y  R  K  *  S  I  *  K  *  *  E  *  E  Q  K  I  P  Q  L  Q  R  R  R  R  R  S  C  L  Y  L  G  S  P  A  M  :  I  H  F  V  L  L  I  S  R  Q  G  K  V  R  L  T  K  W  Y  S  P  Y  S  Q  K  E  R  T  K  :  V  I  R  E  L  S  G  M  I  L  T  R  G  P  K  L  C  N  F  V  E  W  R  G  Y  K  V  V  Y  K  R :   Y  A  S  L  Y  F  C  M  C  I  D  Q  E  D  N  E  L  E  V  L  E  I  I  H  H  F  V  E  I  L  D  R  Y  F  G  S  :  V  C  E  L  D  L  I  F  N  F  H  K  :  A  Y  Y  I  L  D  E  L  V  I  A  G  E  L  Q  E  S  S  K  K  T  V  A  R  L  I  A  A  Q  :  D  S  L  V  E  A  A  K  E  E  A  S  S  L  S  N  I  I  A  Q  A  T  K  *  E  Y  A  G  S  V  Q  V  F  *  V  H  L  C  F  S  A  V  I  Q  T  L  F  L  L  S  M  F  S  F  N  F  V  V  I  N  R  N  F  F  V  V  M  S  F  L  L  N  L  S  V  V  F  T  S  L  C  C  L  K  T  A  G  H  I  Y  S  T  C  S  S  G  G  A  S  L  *  R  I  S  Q  N  </first_frame>
            <second_frame>  N  P  N  L  R  K  H  K  L  V  K  K  K  I  Q  D  C  T  E  N  R  V  Y  R  N  N  R  N  R  N  K  K  S  P  N  S  K  E  E  E  G  G  V  V  C  T  L  D  L  Q  P  * :   F  I  L  F  C  S  L  A  D  R  E  R  *  G  *  P  S  G  I  H  H  I  H  K  K  R  E  P  R :   *  S  V  N  *  V  V  *  F  S  L  E  D  R  S  F  A  I  L  S  S  G  E  D  T  K  S  F  I  K   : D  M  Q  A  C  I  S  V  C  A  *  T  K  R  T  M  S  W  R  S  W  K  S  Y  T  I  L  L  R  F  W  T  D  T  L  E  V :   Y  V  S  *  T  *  F  S  I  F  T  R :   H  T  I  Y  W  T  N  L  *  L  L  V  N  S  K  N  Q  A  R  K  Q  L  H  V  *  L  L  H  R :   I  L  W  L  R  L  P  K  K  R  Q  V  L  L  V  T  S  L  H  R  L  L  N  E  S  M  Q  A  A  F  K  C  F  E  C  I  Y  V  F  Q  L  *  S  K  H  Y  F  F  F  Q  C  F  R  L  T  L  *  L  *  I  G  I  S  L  *  *  *  V  F  F  S  T  *  A  W  C  L  L  H  S  V  A  *  K  L  L  V  I  Y  I  V  L  V  P  L  V  E  L  A  Y  N  A  S  L  K  T </second_frame>
            <third_frame>   I  Q  I  L  E  N  T  N  *  *  R  K  K  Y  K  T  V  Q  K  I  E  Y  I  E  I  I  G  I  G  T  K  N  P  P  T  P  K  K  K  K  E  E  L  F  V  P  W  I  S  S  H   : D  S  F  C  S  A  H  *  P  T  G  K  G  E  A  N  Q  V  V  F  T  I  F  T  K  R  E  N  Q   : G  N  P  *  I  K  W  Y  D  S  H  S  R  T  E  A  L  Q  F  C  R  V  E  R  I  Q  S  R  L  *  K  :  I  C  K  P  V  F  L  Y  V  H  R  P  R  G  Q  *  V  G  G  P  G  N  H  T  P  F  C  *  D  S  G  P  I  L  W  K   : C  M  *  A  R  L  N  F  Q  F  S  Q   : G  I  L  Y  I  G  R  T  C  D  C  W  *  T  P  R  I  K  Q  E  N  S  C  T  S  N  C  C  T   : G  F  F  G  *  G  C  Q  R  R  G  K  F  S  *  *  H  H  C  T  G  Y  *  M  R  V  C  R  Q  R  S  S  V  L  S  A  F  M  F  F  S  C  N  P  N  I  I  S  S  F  N  V  F  V  *  L  C  S  Y  K  *  E  F  L  C  S  N  E  F  S  S  Q  P  K  R  G  V  Y  F  T  L  L  P  K  N  C  W  S  Y  I  *  Y  L  F  L  W  W  S  *  L  I  T  H  L  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87022" stop="87090"/>
                    <exon start="88586" stop="88672"/>
                    <exon start="90012" stop="90103"/>
                    <exon start="90263" stop="90371"/>
                    <exon start="90454" stop="90489"/>
                    <exon start="91299" stop="91385"/>
                    <exon start="91466" stop="91537"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQKIPQLQRRRRRSCLYLGSPAMIHFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGMILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELVIAGELQESSKKTVARLIAAQDSLVEAAKEEASSLSNIIAQATK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91568" stop="91768"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHLCFSAVIQTLFLLSMFSFNFVVINRNFFVVMSFLLNLSVVFTSLCCLKTAGHIYSTCSSGGASL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88586" e_stop="88672"/>
            <exon e_start="90012" e_stop="90103"/>
            <exon e_start="90263" e_stop="90371"/>
            <exon e_start="91299" e_stop="91385"/>
            <exon e_start="91466" e_stop="91478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.855" e_score="0.989"/>
          <exon-intron don_prob="0.902" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.465" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88586" e_stop="88672" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.802">
            <gDNA_intron_boundary i_start="88673" i_stop="90011" i_length="1339"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="90012" e_stop="90103" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.799" acc_prob="0.855">
            <gDNA_intron_boundary i_start="90104" i_stop="90262" i_length="159"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90263" e_stop="90371" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90372" i_stop="91298" i_length="927"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91299" e_stop="91385" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.465">
            <gDNA_intron_boundary i_start="91386" i_stop="91465" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91466" e_stop="91478" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88586" stop="88672"/>
              <exon start="90012" stop="90103"/>
              <exon start="90263" stop="90371"/>
              <exon start="91299" stop="91385"/>
              <exon start="91466" stop="91478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCATTTTGTTCTGCTCATTAGCCGACAGGGAAAGGTGAGGCTAACCAAGTGGTATTCACCATATTCACAAAAAGAGAGAACCAAG : GTAATCCGTGAATTAAGTGGTATGATTCTCACTCGAGGACCGAAGCTTTGCAATTTTGTCGAGTGGAGAGGATACAAAGTCGTTTATAAAAG : ATATGCAAGCCTGTATTTCTGTATGTGCATAGACCAAGAGGACAATGAGTTGGAGGTCCTGGAAATCATACACCATTTTGTTGAGATTCTGGACCGATACTTTGGAAGT : GCATACTATATATTGGACGAACTTGTGATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTTGCACGTCTAATTGCTGCACAG : GATTCTTTGGTTG</gDNA_template>
            <first_frame> I  H  F  V  L  L  I  S  R  Q  G  K  V  R  L  T  K  W  Y  S  P  Y  S  Q  K  E  R  T  K  :  V  I  R  E  L  S  G  M  I  L  T  R  G  P  K  L  C  N  F  V  E  W  R  G  Y  K  V  V  Y  K  R :   Y  A  S  L  Y  F  C  M  C  I  D  Q  E  D  N  E  L  E  V  L  E  I  I  H  H  F  V  E  I  L  D  R  Y  F  G  S  :  A  Y  Y  I  L  D  E  L  V  I  A  G  E  L  Q  E  S  S  K  K  T  V  A  R  L  I  A  A  Q  :  D  S  L  V  </first_frame>
            <second_frame>  F  I  L  F  C  S  L  A  D  R  E  R  *  G  *  P  S  G  I  H  H  I  H  K  K  R  E  P  R :   *  S  V  N  *  V  V  *  F  S  L  E  D  R  S  F  A  I  L  S  S  G  E  D  T  K  S  F  I  K   : D  M  Q  A  C  I  S  V  C  A  *  T  K  R  T  M  S  W  R  S  W  K  S  Y  T  I  L  L  R  F  W  T  D  T  L  E  V :   H  T  I  Y  W  T  N  L  *  L  L  V  N  S  K  N  Q  A  R  K  Q  L  H  V  *  L  L  H  R :   I  L  W  L </second_frame>
            <third_frame>   S  F  C  S  A  H  *  P  T  G  K  G  E  A  N  Q  V  V  F  T  I  F  T  K  R  E  N  Q   : G  N  P  *  I  K  W  Y  D  S  H  S  R  T  E  A  L  Q  F  C  R  V  E  R  I  Q  S  R  L  *  K  :  I  C  K  P  V  F  L  Y  V  H  R  P  R  G  Q  *  V  G  G  P  G  N  H  T  P  F  C  *  D  S  G  P  I  L  W  K   : C  I  L  Y  I  G  R  T  C  D  C  W  *  T  P  R  I  K  Q  E  N  S  C  T  S  N  C  C  T   : G  F  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88586" stop="88672"/>
                    <exon start="90012" stop="90103"/>
                    <exon start="90263" stop="90371"/>
                    <exon start="91299" stop="91385"/>
                    <exon start="91466" stop="91477"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGMILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHFVEILDRYFGSAYYILDELVIAGELQESSKKTVARLIAAQDSLV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="107807" PGL_stop="101611"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107807" e_stop="107110"/>
            <exon e_start="107012" e_stop="106799"/>
            <exon e_start="106690" e_stop="106406"/>
            <exon e_start="106322" e_stop="106263"/>
            <exon e_start="106154" e_stop="106024"/>
            <exon e_start="105695" e_stop="105581"/>
            <exon e_start="105358" e_stop="105210"/>
            <exon e_start="102017" e_stop="101611"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.345" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.937" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107807" e_stop="107110" e_length="698"/>
          </exon>
          <intron i_serial="1" don_prob="0.345" acc_prob="0.956">
            <gDNA_intron_boundary i_start="107109" i_stop="107013" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107012" e_stop="106799" e_length="214"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106798" i_stop="106691" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="106690" e_stop="106406" e_length="285"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.937">
            <gDNA_intron_boundary i_start="106405" i_stop="106323" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106322" e_stop="106263" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.920">
            <gDNA_intron_boundary i_start="106262" i_stop="106155" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106154" e_stop="106024" e_length="131"/>
          </exon>
          <intron i_serial="5" don_prob="0.947" acc_prob="0.799">
            <gDNA_intron_boundary i_start="106023" i_stop="105696" i_length="328"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105695" e_stop="105581" e_length="115"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105580" i_stop="105359" i_length="222"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="105358" e_stop="105210" e_length="149"/>
          </exon>
          <intron i_serial="7" don_prob="0.953" acc_prob="0.994">
            <gDNA_intron_boundary i_start="105209" i_stop="102018" i_length="3192"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="102017" e_stop="101611" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107807" stop="107110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107807" stop="107193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107807" stop="107194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107465" stop="107110"/>
              <exon start="107012" stop="106799"/>
              <exon start="106690" stop="106441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106499" stop="106406"/>
              <exon start="106322" stop="106263"/>
              <exon start="106154" stop="106024"/>
              <exon start="105695" stop="105581"/>
              <exon start="105358" stop="105210"/>
              <exon start="102017" stop="101628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106463" stop="106406"/>
              <exon start="106322" stop="106263"/>
              <exon start="106154" stop="106024"/>
              <exon start="105695" stop="105581"/>
              <exon start="105358" stop="105210"/>
              <exon start="102017" stop="101882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106131" stop="106024"/>
              <exon start="105695" stop="105581"/>
              <exon start="105358" stop="105210"/>
              <exon start="102017" stop="101671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106070" stop="106024"/>
              <exon start="105695" stop="105581"/>
              <exon start="105358" stop="105210"/>
              <exon start="102017" stop="101611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105682" stop="105581"/>
              <exon start="105358" stop="105210"/>
              <exon start="102017" stop="101734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105318" stop="105210"/>
              <exon start="102017" stop="101621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGAGAAGTGTCCTGATGCAAGTTCATTGGCTGAGAATTATGTTAGATGAAGGTCATACCCTTGGTTCAAGTTTAACTTTGACCAACAAACTGCAAATGGCTGTTTCTTTGCGTGCTACCAATCGCTGGTTATTAACTGGAACACCAACTCCAAACACCCCCAGTAGCCAGCTTTCTCATCTGCAACCCTTGCTTAAGTTTCTCCATGATGAAACTTATGGACAGAATCAGAAAGCCTGGGAAGCTGGTATTCTCAAGCCATTCGAAGCAGAGATGGAAGAGGGTCGGTCACGTTTGCTACAGTTACTTCACAGGTGCATGATCAGTGCCAGGAAAAAAGATTTGCAGAATATTCCTCCTTGCATCAAGAAAGTAACACTCTTAAATTTTACTGAAGAACATGCAAGAACTTATAATGAATTGGTAGAAACCGTGCGGAGAAACATACTAATGGCAGACTGGAATGATCCTTCTCATGTTGAGAGTTTACTGAACCCTAAACAATGGAAATTCCGAAGTACAACCATCAGAAATGTAAGACTTTCGTGCTGTGTAGCAGGACATATCAGAGTAACAGAGGCAGGTGATGATATTCAAGAAACTATGGATATCTTAGTTGAGGATGGTCTGGATCCCACTTCAGAGGAGTATGGTCTGATAAAATATCACATTTTATTTGGTGGAAACTGCATGAG : GTGTAAAGCATGGTGCCGTCTACCAGTGATTACACCTTGTAAACATCTATTATGCCTTGACTGTGTTTCTTTAGATAGCGAGAAGTGTACAATTTCTGGCTGTGGTAACTTGTATGAGATGCAAAGTCCTGAAACACTGGCCCGTCCTGAAAATCCAAATCCAAAGTGGCCCGTTCCAAAGGATCTGATTGAGTTGCAACCATCTTATAAACAG : GATGACTGGAATCCCGATTGGCAATCAACATCTAGCAGTAAAGTTGCTTATCTTGTTGGTAGATTAAAGGAAATAAAGGAAGCTAATAGGATGATTATTATCTCTAACGAGGACAAAATTGTTGAGACTAGTGTATCTCATGTACATACTAGGATAAACAATTTCAGCATGTTTTCATCGCAGCAGTATTTGGTTGGGCCAGCAAATGATTTCTGCAATATAAATCCACAGAAAGTTATCATATTTTCTCAGTTTCTGGAGCACATACATGTAATTGAACAGCAG : TTAGCAATTGCTGGTATCAGTTTTGCCAGTTTGTATAGTCCAATGCCTTCCATTAGCAAG : GTGAAAGCACTGTTAACATTTCAGCATGATGTTGACTGCATGGCTCTTTTAATGGACGGAAGTGCAGCTTTAGGTCTTGATCTGAGCTTTGTGACACATGTTTATTTAATGGAGCCAATTTGGGACAAAAG : TATGGAGGAACAGGTGATCAGTCGTGCTCATCGGATGGGTGCTACACGTCCTATTCTCGTGGAAACACTGGCGATGAGTGGCACAATTGAGGAGCAAATGATGAAGTTCTTACAG : GAGGCTGATGAAGGTAGGAGGTTGTTGAAGGAAGAATATGGTAAACTGGGTCATGATGGAGCACGAGCACCACGCACATTACATGATTTCGCTGAAAGCAATTATCTCACTCGCCTTAACTTTGTTCGGACTAGTTCCAAGGCATGAAG : GTGGACGATTCCATTGTTTTGATGAACTGGCACTGCAGGGTCTCGTCAATCGCTGACTCTGGCAATCTATTCTGCCTTGCTGAGTTGTGCCAAGAGGCCCAAGACTATTTATGCTAGATAGTTGCTGCTTCTTTGATTATTGTTGCCCACCGGTGGAATCATTTTTATTCTTGCGGCATTGCAGAATTCAGGCATTCGGATGTGGCAACCTGATGATCTTCAAAGTCTGGCTTAGAATTGGTTGTAGATATTTATACATTTATTCTTCTTAGTCAGAGAAATTTCCCTAGTGTAGTATATCCTTGTCTTTTCCTTTTTTTGCATCTCTCTAAGGAGAAAATACAGTTGTAGTGGCTGCTTCGAAAATAAGATATGGACCATTTTTACTGAATTTTGATCTGGAACGA</gDNA_template>
            <first_frame> K  K  R  S  V  L  M  Q  V  H  W  L  R  I  M  L  D  E  G  H  T  L  G  S  S  L  T  L  T  N  K  L  Q  M  A  V  S  L  R  A  T  N  R  W  L  L  T  G  T  P  T  P  N  T  P  S  S  Q  L  S  H  L  Q  P  L  L  K  F  L  H  D  E  T  Y  G  Q  N  Q  K  A  W  E  A  G  I  L  K  P  F  E  A  E  M  E  E  G  R  S  R  L  L  Q  L  L  H  R  C  M  I  S  A  R  K  K  D  L  Q  N  I  P  P  C  I  K  K  V  T  L  L  N  F  T  E  E  H  A  R  T  Y  N  E  L  V  E  T  V  R  R  N  I  L  M  A  D  W  N  D  P  S  H  V  E  S  L  L  N  P  K  Q  W  K  F  R  S  T  T  I  R  N  V  R  L  S  C  C  V  A  G  H  I  R  V  T  E  A  G  D  D  I  Q  E  T  M  D  I  L  V  E  D  G  L  D  P  T  S  E  E  Y  G  L  I  K  Y  H  I  L  F  G  G  N  C  M  R :   C  K  A  W  C  R  L  P  V  I  T  P  C  K  H  L  L  C  L  D  C  V  S  L  D  S  E  K  C  T  I  S  G  C  G  N  L  Y  E  M  Q  S  P  E  T  L  A  R  P  E  N  P  N  P  K  W  P  V  P  K  D  L  I  E  L  Q  P  S  Y  K  Q  :  D  D  W  N  P  D  W  Q  S  T  S  S  S  K  V  A  Y  L  V  G  R  L  K  E  I  K  E  A  N  R  M  I  I  I  S  N  E  D  K  I  V  E  T  S  V  S  H  V  H  T  R  I  N  N  F  S  M  F  S  S  Q  Q  Y  L  V  G  P  A  N  D  F  C  N  I  N  P  Q  K  V  I  I  F  S  Q  F  L  E  H  I  H  V  I  E  Q  Q  :  L  A  I  A  G  I  S  F  A  S  L  Y  S  P  M  P  S  I  S  K  :  V  K  A  L  L  T  F  Q  H  D  V  D  C  M  A  L  L  M  D  G  S  A  A  L  G  L  D  L  S  F  V  T  H  V  Y  L  M  E  P  I  W  D  K  S :   M  E  E  Q  V  I  S  R  A  H  R  M  G  A  T  R  P  I  L  V  E  T  L  A  M  S  G  T  I  E  E  Q  M  M  K  F  L  Q  :  E  A  D  E  G  R  R  L  L  K  E  E  Y  G  K  L  G  H  D  G  A  R  A  P  R  T  L  H  D  F  A  E  S  N  Y  L  T  R  L  N  F  V  R  T  S  S  K  A  *  R :   W  T  I  P  L  F  *  *  T  G  T  A  G  S  R  Q  S  L  T  L  A  I  Y  S  A  L  L  S  C  A  K  R  P  K  T  I  Y  A  R  *  L  L  L  L  *  L  L  L  P  T  G  G  I  I  F  I  L  A  A  L  Q  N  S  G  I  R  M  W  Q  P  D  D  L  Q  S  L  A  *  N  W  L  *  I  F  I  H  L  F  F  L  V  R  E  I  S  L  V  *  Y  I  L  V  F  S  F  F  C  I  S  L  R  R  K  Y  S  C  S  G  C  F  E  N  K  I  W  T  I  F  T  E  F  *  S  G  T  </first_frame>
            <second_frame>  K  R  E  V  S  *  C  K  F  I  G  *  E  L  C  *  M  K  V  I  P  L  V  Q  V  *  L  *  P  T  N  C  K  W  L  F  L  C  V  L  P  I  A  G  Y  *  L  E  H  Q  L  Q  T  P  P  V  A  S  F  L  I  C  N  P  C  L  S  F  S  M  M  K  L  M  D  R  I  R  K  P  G  K  L  V  F  S  S  H  S  K  Q  R  W  K  R  V  G  H  V  C  Y  S  Y  F  T  G  A  *  S  V  P  G  K  K  I  C  R  I  F  L  L  A  S  R  K  *  H  S  *  I  L  L  K  N  M  Q  E  L  I  M  N  W  *  K  P  C  G  E  T  Y  *  W  Q  T  G  M  I  L  L  M  L  R  V  Y  *  T  L  N  N  G  N  S  E  V  Q  P  S  E  M  *  D  F  R  A  V  *  Q  D  I  S  E  *  Q  R  Q  V  M  I  F  K  K  L  W  I  S  *  L  R  M  V  W  I  P  L  Q  R  S  M  V  *  *  N  I  T  F  Y  L  V  E  T  A  *   : G  V  K  H  G  A  V  Y  Q  *  L  H  L  V  N  I  Y  Y  A  L  T  V  F  L  *  I  A  R  S  V  Q  F  L  A  V  V  T  C  M  R  C  K  V  L  K  H  W  P  V  L  K  I  Q  I  Q  S  G  P  F  Q  R  I  *  L  S  C  N  H  L  I  N  R :   M  T  G  I  P  I  G  N  Q  H  L  A  V  K  L  L  I  L  L  V  D  *  R  K  *  R  K  L  I  G  *  L  L  S  L  T  R  T  K  L  L  R  L  V  Y  L  M  Y  I  L  G  *  T  I  S  A  C  F  H  R  S  S  I  W  L  G  Q  Q  M  I  S  A  I  *  I  H  R  K  L  S  Y  F  L  S  F  W  S  T  Y  M  *  L  N  S  S :   *  Q  L  L  V  S  V  L  P  V  C  I  V  Q  C  L  P  L  A  R :   *  K  H  C  *  H  F  S  M  M  L  T  A  W  L  F  *  W  T  E  V  Q  L  *  V  L  I  *  A  L  *  H  M  F  I  *  W  S  Q  F  G  T  K   : V  W  R  N  R  *  S  V  V  L  I  G  W  V  L  H  V  L  F  S  W  K  H  W  R  *  V  A  Q  L  R  S  K  *  *  S  S  Y  R :   R  L  M  K  V  G  G  C  *  R  K  N  M  V  N  W  V  M  M  E  H  E  H  H  A  H  Y  M  I  S  L  K  A  I  I  S  L  A  L  T  L  F  G  L  V  P  R  H  E   : G  G  R  F  H  C  F  D  E  L  A  L  Q  G  L  V  N  R  *  L  W  Q  S  I  L  P  C  *  V  V  P  R  G  P  R  L  F  M  L  D  S  C  C  F  F  D  Y  C  C  P  P  V  E  S  F  L  F  L  R  H  C  R  I  Q  A  F  G  C  G  N  L  M  I  F  K  V  W  L  R  I  G  C  R  Y  L  Y  I  Y  S  S  *  S  E  K  F  P  *  C  S  I  S  L  S  F  P  F  F  A  S  L  *  G  E  N  T  V  V  V  A  A  S  K  I  R  Y  G  P  F  L  L  N  F  D  L  E  R </second_frame>
            <third_frame>   K  E  K  C  P  D  A  S  S  L  A  E  N  Y  V  R  *  R  S  Y  P  W  F  K  F  N  F  D  Q  Q  T  A  N  G  C  F  F  A  C  Y  Q  S  L  V  I  N  W  N  T  N  S  K  H  P  Q  *  P  A  F  S  S  A  T  L  A  *  V  S  P  *  *  N  L  W  T  E  S  E  S  L  G  S  W  Y  S  Q  A  I  R  S  R  D  G  R  G  S  V  T  F  A  T  V  T  S  Q  V  H  D  Q  C  Q  E  K  R  F  A  E  Y  S  S  L  H  Q  E  S  N  T  L  K  F  Y  *  R  T  C  K  N  L  *  *  I  G  R  N  R  A  E  K  H  T  N  G  R  L  E  *  S  F  S  C  *  E  F  T  E  P  *  T  M  E  I  P  K  Y  N  H  Q  K  C  K  T  F  V  L  C  S  R  T  Y  Q  S  N  R  G  R  *  *  Y  S  R  N  Y  G  Y  L  S  *  G  W  S  G  S  H  F  R  G  V  W  S  D  K  I  S  H  F  I  W  W  K  L  H  E  :  V  *  S  M  V  P  S  T  S  D  Y  T  L  *  T  S  I  M  P  *  L  C  F  F  R  *  R  E  V  Y  N  F  W  L  W  *  L  V  *  D  A  K  S  *  N  T  G  P  S  *  K  S  K  S  K  V  A  R  S  K  G  S  D  *  V  A  T  I  L  *  T   : G  *  L  E  S  R  L  A  I  N  I  *  Q  *  S  C  L  S  C  W  *  I  K  G  N  K  G  S  *  *  D  D  Y  Y  L  *  R  G  Q  N  C  *  D  *  C  I  S  C  T  Y  *  D  K  Q  F  Q  H  V  F  I  A  A  V  F  G  W  A  S  K  *  F  L  Q  Y  K  S  T  E  S  Y  H  I  F  S  V  S  G  A  H  T  C  N  *  T  A   : V  S  N  C  W  Y  Q  F  C  Q  F  V  *  S  N  A  F  H  *  Q   : G  E  S  T  V  N  I  S  A  *  C  *  L  H  G  S  F  N  G  R  K  C  S  F  R  S  *  S  E  L  C  D  T  C  L  F  N  G  A  N  L  G  Q  K  :  Y  G  G  T  G  D  Q  S  C  S  S  D  G  C  Y  T  S  Y  S  R  G  N  T  G  D  E  W  H  N  *  G  A  N  D  E  V  L  T   : G  G  *  *  R  *  E  V  V  E  G  R  I  W  *  T  G  S  *  W  S  T  S  T  T  H  I  T  *  F  R  *  K  Q  L  S  H  S  P  *  L  C  S  D  *  F  Q  G  M  K  :  V  D  D  S  I  V  L  M  N  W  H  C  R  V  S  S  I  A  D  S  G  N  L  F  C  L  A  E  L  C  Q  E  A  Q  D  Y  L  C  *  I  V  A  A  S  L  I  I  V  A  H  R  W  N  H  F  Y  S  C  G  I  A  E  F  R  H  S  D  V  A  T  *  *  S  S  K  S  G  L  E  L  V  V  D  I  Y  T  F  I  L  L  S  Q  R  N  F  P  S  V  V  Y  P  C  L  F  L  F  L  H  L  S  K  E  K  I  Q  L  *  W  L  L  R  K  *  D  M  D  H  F  Y  *  I  L  I  W  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107807" stop="107110"/>
                    <exon start="107012" stop="106799"/>
                    <exon start="106690" stop="106406"/>
                    <exon start="106322" stop="106263"/>
                    <exon start="106154" stop="106024"/>
                    <exon start="105695" stop="105581"/>
                    <exon start="105358" stop="105212"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1647</number_coding_nucleotides>
                  <number_encoded_amino_acids>549</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKRSVLMQVHWLRIMLDEGHTLGSSLTLTNKLQMAVSLRATNRWLLTGTPTPNTPSSQLSHLQPLLKFLHDETYGQNQKAWEAGILKPFEAEMEEGRSRLLQLLHRCMISARKKDLQNIPPCIKKVTLLNFTEEHARTYNELVETVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIRVTEAGDDIQETMDILVEDGLDPTSEEYGLIKYHILFGGNCMRCKAWCRLPVITPCKHLLCLDCVSLDSEKCTISGCGNLYEMQSPETLARPENPNPKWPVPKDLIELQPSYKQDDWNPDWQSTSSSKVAYLVGRLKEIKEANRMIIISNEDKIVETSVSHVHTRINNFSMFSSQQYLVGPANDFCNINPQKVIIFSQFLEHIHVIEQQLAIAGISFASLYSPMPSISKVKALLTFQHDVDCMALLMDGSAALGLDLSFVTHVYLMEPIWDKSMEEQVISRAHRMGATRPILVETLAMSGTIEEQMMKFLQEADEGRRLLKEEYGKLGHDGARAPRTLHDFAESNYLTRLNFVRTSSKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="111297" PGL_stop="109538"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111297" e_stop="110764"/>
            <exon e_start="109704" e_stop="109538"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111297" e_stop="110764" e_length="534"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="110763" i_stop="109705" i_length="1059"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="109704" e_stop="109538" e_length="167"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111297" stop="110764"/>
              <exon start="109704" stop="109538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACAGTTTCGAAACCCTAACTTCTCCATGAATTCTTAGCTCCGAAGCTTCAAATTCAGCGATGGAGGGTGATTATTCAATCCCAGACCACAAGCTATGTGGTTTCTTTCTTACAGCCGTTGAAATTTCGTCTCCGCCGCACTCCTCCGAGCTCCATAGCACCCTCCCTTTAAATTCACAGTGCTACATCGCCGGAGACGGTTCTAATATCCACTTTGTAACGGATAACGACGTTGAATTGTGTCCCATTGGTTCTCATACGGAAGAGGACCGGAATGATGTTGTTCCGATGAAGAAGCGGAGCAGAATTGGAATGGTGAATGGTAGTATAAGCGTGGTGCATCAGTTGCACAAACTTGTAATGCAAAAATGCTTGAAGATTGTTGCTAGGGTTCTTGAGGTTGTGGAGCGTGGCCATGATGAAGAAGTTAGGGCTGTTGTTCTTGTGGATGTGTACTTGCCTTTAGCTTTGTGGTCCGGTTGGCAGTTCCCCAAGTCTGGCCCTGTTGCTGCAGCACTTTTCCGGCATATCAG : TTGTGACTGGGATGCTTGGAGTTCTATGCTTCAGTCTGCTAAACTTGGTGTTGAAAAGGATTTTAGTATTTGGAATCTGTCCGACTGTCATGTTCTAGGATGCAAACTGCATTGCAGTGCATCTGACCCTTCCAAGAAAAAGCTCTTTGAGCTCCATGAAATTTTTA</gDNA_template>
            <first_frame> *  Q  F  R  N  P  N  F  S  M  N  S  *  L  R  S  F  K  F  S  D  G  G  *  L  F  N  P  R  P  Q  A  M  W  F  L  S  Y  S  R  *  N  F  V  S  A  A  L  L  R  A  P  *  H  P  P  F  K  F  T  V  L  H  R  R  R  R  F  *  Y  P  L  C  N  G  *  R  R  *  I  V  S  H  W  F  S  Y  G  R  G  P  E  *  C  C  S  D  E  E  A  E  Q  N  W  N  G  E  W  *  Y  K  R  G  A  S  V  A  Q  T  C  N  A  K  M  L  E  D  C  C  *  G  S  *  G  C  G  A  W  P  *  *  R  S  *  G  C  C  S  C  G  C  V  L  A  F  S  F  V  V  R  L  A  V  P  Q  V  W  P  C  C  C  S  T  F  P  A  Y  Q  :  L  *  L  G  C  L  E  F  Y  A  S  V  C  *  T  W  C  *  K  G  F  *  Y  L  E  S  V  R  L  S  C  S  R  M  Q  T  A  L  Q  C  I  *  P  F  Q  E  K  A  L  *  A  P  *  N  F   </first_frame>
            <second_frame>  D  S  F  E  T  L  T  S  P  *  I  L  S  S  E  A  S  N  S  A  M  E  G  D  Y  S  I  P  D  H  K  L  C  G  F  F  L  T  A  V  E  I  S  S  P  P  H  S  S  E  L  H  S  T  L  P  L  N  S  Q  C  Y  I  A  G  D  G  S  N  I  H  F  V  T  D  N  D  V  E  L  C  P  I  G  S  H  T  E  E  D  R  N  D  V  V  P  M  K  K  R  S  R  I  G  M  V  N  G  S  I  S  V  V  H  Q  L  H  K  L  V  M  Q  K  C  L  K  I  V  A  R  V  L  E  V  V  E  R  G  H  D  E  E  V  R  A  V  V  L  V  D  V  Y  L  P  L  A  L  W  S  G  W  Q  F  P  K  S  G  P  V  A  A  A  L  F  R  H  I  S :   C  D  W  D  A  W  S  S  M  L  Q  S  A  K  L  G  V  E  K  D  F  S  I  W  N  L  S  D  C  H  V  L  G  C  K  L  H  C  S  A  S  D  P  S  K  K  K  L  F  E  L  H  E  I  F  </second_frame>
            <third_frame>   T  V  S  K  P  *  L  L  H  E  F  L  A  P  K  L  Q  I  Q  R  W  R  V  I  I  Q  S  Q  T  T  S  Y  V  V  S  F  L  Q  P  L  K  F  R  L  R  R  T  P  P  S  S  I  A  P  S  L  *  I  H  S  A  T  S  P  E  T  V  L  I  S  T  L  *  R  I  T  T  L  N  C  V  P  L  V  L  I  R  K  R  T  G  M  M  L  F  R  *  R  S  G  A  E  L  E  W  *  M  V  V  *  A  W  C  I  S  C  T  N  L  *  C  K  N  A  *  R  L  L  L  G  F  L  R  L  W  S  V  A  M  M  K  K  L  G  L  L  F  L  W  M  C  T  C  L  *  L  C  G  P  V  G  S  S  P  S  L  A  L  L  L  Q  H  F  S  G  I  S   : V  V  T  G  M  L  G  V  L  C  F  S  L  L  N  L  V  L  K  R  I  L  V  F  G  I  C  P  T  V  M  F  *  D  A  N  C  I  A  V  H  L  T  L  P  R  K  S  S  L  S  S  M  K  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111266" stop="110764"/>
                    <exon start="109704" stop="109539"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSSEASNSAMEGDYSIPDHKLCGFFLTAVEISSPPHSSELHSTLPLNSQCYIAGDGSNIHFVTDNDVELCPIGSHTEEDRNDVVPMKKRSRIGMVNGSISVVHQLHKLVMQKCLKIVARVLEVVERGHDEEVRAVVLVDVYLPLALWSGWQFPKSGPVAAALFRHISCDWDAWSSMLQSAKLGVEKDFSIWNLSDCHVLGCKLHCSASDPSKKKLFELHEIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="118817" PGL_stop="119357"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118817" e_stop="119357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118817" e_stop="119357" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118817" stop="119357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118817" stop="119357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118818" stop="119357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271608" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTGTTGGACTTCATTAGCGGACACCAACTAATTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCTTCTTTTTGTGGATTGTTGCCTCAATATCTATATTATTATCTTTGCGTTGAGTGTTTAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCTTCAAGATTTGCTTTGTTATTGTTCTATCAAGTACCAAAACTTATGACTCTTTTGCAACACTGACTTAATATGTGTATATAGTAAATACTAAAACTGTAATATGTGTTAACTCTGTGCTTATATTTCTGTTAATGTTTGATATGTCTACACTCTTTTCATATTGTTATGACCTTGAAAAAGATCATCTTACAGCTTTCTCTAGAACCTGTATTCATTTTCTCCTAAAAGCTCAAAAGACAATCATAGGGCAGCAATCACTCTTAATTCAGTATGAAAAAAGTCTTGAAAACCTCAAAAAGTAGCACTTTCTGTATGCGTGTTGAGTAGTGATTTGTATCTTTTTTTTT</gDNA_template>
            <first_frame> W  C  W  T  S  L  A  D  T  N  *  L  G  I  E  Q  G  K  Y  P  S  I  *  S  S  F  L  V  I  I  S  F  F  F  L  W  I  V  A  S  I  S  I  L  L  S  L  R  *  V  F  N  L  A  *  K  E  M  Y  L  S  R  R  N  L  Q  D  L  L  C  Y  C  S  I  K  Y  Q  N  L  *  L  F  C  N  T  D  L  I  C  V  Y  S  K  Y  *  N  C  N  M  C  *  L  C  A  Y  I  S  V  N  V  *  Y  V  Y  T  L  F  I  L  L  *  P  *  K  R  S  S  Y  S  F  L  *  N  L  Y  S  F  S  P  K  S  S  K  D  N  H  R  A  A  I  T  L  N  S  V  *  K  K  S  *  K  P  Q  K  V  A  L  S  V  C  V  L  S  S  D  L  Y  L  F  F  </first_frame>
            <second_frame>  G  V  G  L  H  *  R  T  P  T  N  W  G  L  N  R  E  N  T  L  R  F  D  Q  V  F  W  *  S  F  P  S  S  F  C  G  L  L  P  Q  Y  L  Y  Y  Y  L  C  V  E  C  L  T  W  H  E  K  K  C  T  Y  Q  G  E  I  F  K  I  C  F  V  I  V  L  S  S  T  K  T  Y  D  S  F  A  T  L  T  *  Y  V  Y  I  V  N  T  K  T  V  I  C  V  N  S  V  L  I  F  L  L  M  F  D  M  S  T  L  F  S  Y  C  Y  D  L  E  K  D  H  L  T  A  F  S  R  T  C  I  H  F  L  L  K  A  Q  K  T  I  I  G  Q  Q  S  L  L  I  Q  Y  E  K  S  L  E  N  L  K  K  *  H  F  L  Y  A  C  *  V  V  I  C  I  F  F  F </second_frame>
            <third_frame>   V  L  D  F  I  S  G  H  Q  L  I  G  D  *  T  G  K  I  P  F  D  L  I  K  F  S  G  D  H  F  L  L  L  F  V  D  C  C  L  N  I  Y  I  I  I  F  A  L  S  V  *  L  G  M  K  R  N  V  L  I  K  E  K  S  S  R  F  A  L  L  L  F  Y  Q  V  P  K  L  M  T  L  L  Q  H  *  L  N  M  C  I  *  *  I  L  K  L  *  Y  V  L  T  L  C  L  Y  F  C  *  C  L  I  C  L  H  S  F  H  I  V  M  T  L  K  K  I  I  L  Q  L  S  L  E  P  V  F  I  F  S  *  K  L  K  R  Q  S  *  G  S  N  H  S  *  F  S  M  K  K  V  L  K  T  S  K  S  S  T  F  C  M  R  V  E  *  *  F  V  S  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119079" stop="119312"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVYIVNTKTVICVNSVLIFLLMFDMSTLFSYCYDLEKDHLTAFSRTCIHFLLKAQKTIIGQQSLLIQYEKSLENLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="121828" PGL_stop="122535"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121828" e_stop="122535"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="121828" e_stop="122535" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121828" stop="122535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332480" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTCTCAACAATTTCTATCATATATCATATTTTTATTTTATTTTCAGGATTGATTGCTTTCTATCGCTCACCTTCGTATCATTCTCCTTAATATTATATCTTTTGGTTTTGTAGGCCACTTACAATCTTTTTTTCTTTTTAGTTTATGTTCGTTTTATGAGAGATTTTCATTTCTACACATACGAGATTTGAAAAGACTAGGTGGTCAAAAAATCTTCATATTTCTACGCATACAAAAGATCTGAAAAGACCATATGGTCAAAATATCATAATTTCAACCTATACGAGATTTGAATATACCAAGTGGTCAAGAGATGTTCATTTCTACCCATACGAGATCGGCGGTCAAGATATCTTAATTCCCTATTGGTATAATATTGTTAATAGTAAAGAGAGAATTTTTATTTTATGATGGATCATCACAGGGACAATGAATTTGAATATCAAGAAATCGAGAAAACAAAGACATCATCAAAATTCAATAGATCAAGGACTATACACAGCCCGAGAAACTCGATTGAATTCCCCGAAAAGCCCTTGTATCTCTACCCTTCTCCTCATTCCATCGAACGTAATGGCTCCATTAAAAAGCTTCATTGCTCACCTTTAGGATCCATGGTTGGAAAAGTGAAAAAGCTGTATTCAATTTTCGATTCTCGTAAAGAAAATCCTCGATCCTCGATTCCAAAACCTCAAAGCAAGCATTC</gDNA_template>
            <first_frame> I  S  Q  Q  F  L  S  Y  I  I  F  L  F  Y  F  Q  D  *  L  L  S  I  A  H  L  R  I  I  L  L  N  I  I  S  F  G  F  V  G  H  L  Q  S  F  F  L  F  S  L  C  S  F  Y  E  R  F  S  F  L  H  I  R  D  L  K  R  L  G  G  Q  K  I  F  I  F  L  R  I  Q  K  I  *  K  D  H  M  V  K  I  S  *  F  Q  P  I  R  D  L  N  I  P  S  G  Q  E  M  F  I  S  T  H  T  R  S  A  V  K  I  S  *  F  P  I  G  I  I  L  L  I  V  K  R  E  F  L  F  Y  D  G  S  S  Q  G  Q  *  I  *  I  S  R  N  R  E  N  K  D  I  I  K  I  Q  *  I  K  D  Y  T  Q  P  E  K  L  D  *  I  P  R  K  A  L  V  S  L  P  F  S  S  F  H  R  T  *  W  L  H  *  K  A  S  L  L  T  F  R  I  H  G  W  K  S  E  K  A  V  F  N  F  R  F  S  *  R  K  S  S  I  L  D  S  K  T  S  K  Q  A  F </first_frame>
            <second_frame>  S  L  N  N  F  Y  H  I  S  Y  F  Y  F  I  F  R  I  D  C  F  L  S  L  T  F  V  S  F  S  L  I  L  Y  L  L  V  L  *  A  T  Y  N  L  F  F  F  L  V  Y  V  R  F  M  R  D  F  H  F  Y  T  Y  E  I  *  K  D  *  V  V  K  K  S  S  Y  F  Y  A  Y  K  R  S  E  K  T  I  W  S  K  Y  H  N  F  N  L  Y  E  I  *  I  Y  Q  V  V  K  R  C  S  F  L  P  I  R  D  R  R  S  R  Y  L  N  S  L  L  V  *  Y  C  *  *  *  R  E  N  F  Y  F  M  M  D  H  H  R  D  N  E  F  E  Y  Q  E  I  E  K  T  K  T  S  S  K  F  N  R  S  R  T  I  H  S  P  R  N  S  I  E  F  P  E  K  P  L  Y  L  Y  P  S  P  H  S  I  E  R  N  G  S  I  K  K  L  H  C  S  P  L  G  S  M  V  G  K  V  K  K  L  Y  S  I  F  D  S  R  K  E  N  P  R  S  S  I  P  K  P  Q  S  K  H   </second_frame>
            <third_frame>   L  S  T  I  S  I  I  Y  H  I  F  I  L  F  S  G  L  I  A  F  Y  R  S  P  S  Y  H  S  P  *  Y  Y  I  F  W  F  C  R  P  L  T  I  F  F  S  F  *  F  M  F  V  L  *  E  I  F  I  S  T  H  T  R  F  E  K  T  R  W  S  K  N  L  H  I  S  T  H  T  K  D  L  K  R  P  Y  G  Q  N  I  I  I  S  T  Y  T  R  F  E  Y  T  K  W  S  R  D  V  H  F  Y  P  Y  E  I  G  G  Q  D  I  L  I  P  Y  W  Y  N  I  V  N  S  K  E  R  I  F  I  L  *  W  I  I  T  G  T  M  N  L  N  I  K  K  S  R  K  Q  R  H  H  Q  N  S  I  D  Q  G  L  Y  T  A  R  E  T  R  L  N  S  P  K  S  P  C  I  S  T  L  L  L  I  P  S  N  V  M  A  P  L  K  S  F  I  A  H  L  *  D  P  W  L  E  K  *  K  S  C  I  Q  F  S  I  L  V  K  K  I  L  D  P  R  F  Q  N  L  K  A  S  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122219" stop="122533"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RENFYFMMDHHRDNEFEYQEIEKTKTSSKFNRSRTIHSPRNSIEFPEKPLYLYPSPHSIERNGSIKKLHCSPLGSMVGKVKKLYSIFDSRKENPRSSIPKPQSKH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121989" stop="122240"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIFISTHTRFEKTRWSKNLHISTHTKDLKRPYGQNIIISTYTRFEYTKWSRDVHFYPYEIGGQDILIPYWYNIVNSKERIFIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="126308" PGL_stop="127358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126308" e_stop="127358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126308" e_stop="127358" e_length="1051"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126308" stop="126988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126308" stop="126927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126308" stop="126878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126308" stop="126832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126308" stop="126822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126663" stop="127358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCATTTAAGTGCTCTAGCTTAATATTGGCTGATCCATCATCAAATCATACAAGTAACAACAACTCTTCTTCCACAAAATTAGTCAATAGAGGGATCAAGAAAAAAGCGCTCAAGACATTTCCAGTTATAACATATAGTACTACTGAACCAAAACATCCGGGGCTCGACTCTGAATGTGTCATTTGCTTATCAGAGTTTGGAGTTGGAGACAAAATCAAAGTGCTACCTAAGTGCAACCATGGGTTCCATGTTCGATGTATTGATAAATGGCTCAATTCACACTCTTCTTGCCCTACTTGTAGGCACTCCCTCATTGACACTTGCGAAAAAATTGTTAATGGTGGCAATTCTTCTACTACTAATAATAATATTAGAGAGGCAGCAGTACAACAAGTTATAGTAAGGATTGAACCTCTCCAACGTGAAGGTGTGATATCCAATTAATTTACAATCAAAATTTGGTACAAAAAAATAGTAATATAGCTAGATTTTCCTTTAGTAAATCTCTTCTTTTTCCGAGCTCTGATTATGAAAGAAGGAACCTAGAAGAAGAATGTATCACACATACTCAATTAGGTTAGAAGCTTAGAGAGCTAGCATGTAGTTTCCAATGAGTTATCAAGTGTATATACAAGTTAAGGTGTATATTTTCCCTAAAGTTTAAAGTTATGGTATAAGTTCCTATCTTAGGGTAAATTGGATTTTGTATTTTAAATTAAATTAAGCGGGACCCGCTAATCAATCTAACTTTGAAATTGGAAAAAAAAATGGGAATAATTGTAGATGATGGGTTGATGATTAGGAATAAAGTGCTATCAATTTATTTTATTTTTATAAAAGGAATAAAGTAGAATGGTAGATGTTGAATATTTTATTTTTGGATGGTTAAATTTTTTATGAGGTTAAAAGTGTATATTTTTATGAATAACAAGAATTGTTTTTCAAAAGATAAAAAAGGAACCTTTTCCCCGAAAGGATTTTAAAGAAATATAAGTACTTAAAAACATTTTTTGTATTTTGAAAATTTATTAATTAAACGCAAAATTATTT</gDNA_template>
            <first_frame> C  I  *  V  L  *  L  N  I  G  *  S  I  I  K  S  Y  K  *  Q  Q  L  F  F  H  K  I  S  Q  *  R  D  Q  E  K  S  A  Q  D  I  S  S  Y  N  I  *  Y  Y  *  T  K  T  S  G  A  R  L  *  M  C  H  L  L  I  R  V  W  S  W  R  Q  N  Q  S  A  T  *  V  Q  P  W  V  P  C  S  M  Y  *  *  M  A  Q  F  T  L  F  L  P  Y  L  *  A  L  P  H  *  H  L  R  K  N  C  *  W  W  Q  F  F  Y  Y  *  *  *  Y  *  R  G  S  S  T  T  S  Y  S  K  D  *  T  S  P  T  *  R  C  D  I  Q  L  I  Y  N  Q  N  L  V  Q  K  N  S  N  I  A  R  F  S  F  S  K  S  L  L  F  P  S  S  D  Y  E  R  R  N  L  E  E  E  C  I  T  H  T  Q  L  G  *  K  L  R  E  L  A  C  S  F  Q  *  V  I  K  C  I  Y  K  L  R  C  I  F  S  L  K  F  K  V  M  V  *  V  P  I  L  G  *  I  G  F  C  I  L  N  *  I  K  R  D  P  L  I  N  L  T  L  K  L  E  K  K  M  G  I  I  V  D  D  G  L  M  I  R  N  K  V  L  S  I  Y  F  I  F  I  K  G  I  K  *  N  G  R  C  *  I  F  Y  F  W  M  V  K  F  F  M  R  L  K  V  Y  I  F  M  N  N  K  N  C  F  S  K  D  K  K  G  T  F  S  P  K  G  F  *  R  N  I  S  T  *  K  H  F  L  Y  F  E  N  L  L  I  K  R  K  I  I  </first_frame>
            <second_frame>  A  F  K  C  S  S  L  I  L  A  D  P  S  S  N  H  T  S  N  N  N  S  S  S  T  K  L  V  N  R  G  I  K  K  K  A  L  K  T  F  P  V  I  T  Y  S  T  T  E  P  K  H  P  G  L  D  S  E  C  V  I  C  L  S  E  F  G  V  G  D  K  I  K  V  L  P  K  C  N  H  G  F  H  V  R  C  I  D  K  W  L  N  S  H  S  S  C  P  T  C  R  H  S  L  I  D  T  C  E  K  I  V  N  G  G  N  S  S  T  T  N  N  N  I  R  E  A  A  V  Q  Q  V  I  V  R  I  E  P  L  Q  R  E  G  V  I  S  N  *  F  T  I  K  I  W  Y  K  K  I  V  I  *  L  D  F  P  L  V  N  L  F  F  F  R  A  L  I  M  K  E  G  T  *  K  K  N  V  S  H  I  L  N  *  V  R  S  L  E  S  *  H  V  V  S  N  E  L  S  S  V  Y  T  S  *  G  V  Y  F  P  *  S  L  K  L  W  Y  K  F  L  S  *  G  K  L  D  F  V  F  *  I  K  L  S  G  T  R  *  S  I  *  L  *  N  W  K  K  K  W  E  *  L  *  M  M  G  *  *  L  G  I  K  C  Y  Q  F  I  L  F  L  *  K  E  *  S  R  M  V  D  V  E  Y  F  I  F  G  W  L  N  F  L  *  G  *  K  C  I  F  L  *  I  T  R  I  V  F  Q  K  I  K  K  E  P  F  P  R  K  D  F  K  E  I  *  V  L  K  N  I  F  C  I  L  K  I  Y  *  L  N  A  K  L  F </second_frame>
            <third_frame>   H  L  S  A  L  A  *  Y  W  L  I  H  H  Q  I  I  Q  V  T  T  T  L  L  P  Q  N  *  S  I  E  G  S  R  K  K  R  S  R  H  F  Q  L  *  H  I  V  L  L  N  Q  N  I  R  G  S  T  L  N  V  S  F  A  Y  Q  S  L  E  L  E  T  K  S  K  C  Y  L  S  A  T  M  G  S  M  F  D  V  L  I  N  G  S  I  H  T  L  L  A  L  L  V  G  T  P  S  L  T  L  A  K  K  L  L  M  V  A  I  L  L  L  L  I  I  I  L  E  R  Q  Q  Y  N  K  L  *  *  G  L  N  L  S  N  V  K  V  *  Y  P  I  N  L  Q  S  K  F  G  T  K  K  *  *  Y  S  *  I  F  L  *  *  I  S  S  F  S  E  L  *  L  *  K  K  E  P  R  R  R  M  Y  H  T  Y  S  I  R  L  E  A  *  R  A  S  M  *  F  P  M  S  Y  Q  V  Y  I  Q  V  K  V  Y  I  F  P  K  V  *  S  Y  G  I  S  S  Y  L  R  V  N  W  I  L  Y  F  K  L  N  *  A  G  P  A  N  Q  S  N  F  E  I  G  K  K  N  G  N  N  C  R  *  W  V  D  D  *  E  *  S  A  I  N  L  F  Y  F  Y  K  R  N  K  V  E  W  *  M  L  N  I  L  F  L  D  G  *  I  F  Y  E  V  K  S  V  Y  F  Y  E  *  Q  E  L  F  F  K  R  *  K  R  N  L  F  P  E  R  I  L  K  K  Y  K  Y  L  K  T  F  F  V  F  *  K  F  I  N  *  T  Q  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0168B23.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126309" stop="126752"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFKCSSLILADPSSNHTSNNNSSSTKLVNRGIKKKALKTFPVITYSTTEPKHPGLDSECVICLSEFGVGDKIKVLPKCNHGFHVRCIDKWLNSHSSCPTCRHSLIDTCEKIVNGGNSSTTNNNIREAAVQQVIVRIEPLQREGVISN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 146 chains have been computed
$ 
$ memory statistics:
$ 229784 bytes spliced alignments in total
$ 87 spliced alignments have been stored
$ 2641 bytes was the average size of a spliced alignment
$ 29504 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1552 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 170 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 02:35:21
-->
