<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 05:58:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345877" ref_strand="+" ref_description="SGN-U345877        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | brix domain-containing protein, contains Pfam domain, PF04427: Brix domain | chr4:677054-679229 REVERSE | Aliases: F11O4.6, F11O4_6(evalue: 5e-31, score=132) genbank/nr: putative(evalue: 2e-35, score=153)">
      <seq>agttgtgaccttccacaaccagcgtgatttcatattttttcgccatcatcgctacatttttgaaaccaaagagagcaaacagaaagaatcaaaaggtaaaaaaagcaaggatgagaagaacccacaagaaaggacaattgcccgtctgcaggagtgtgggcctcgatttactctcaaattaatcagtctccagcatggtacttttgatactaagggtggggaatatgaatgggttcacaagccggagatggatacaagtcgacggagatttttcctgtgataatgttggatgtttctgctgctgggatttcaaggtctttgtacccaaaccatgttaaagaagaataccaactatctgaggctgaagttcactataaaagttttgatcttttctaattaactgctttttttgtaatggactatctcttatagtaatctattaaagtagaaagatgggttttaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="4741" stop="2709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4441" g_stop="4391" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4390" i_stop="4287" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4286" g_stop="4187" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="151" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4186" i_stop="3453" i_length="734">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3452" g_stop="3363" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="241" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3362" i_stop="3230" i_length="133">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3229" g_stop="3009" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="462" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="487"/>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U345877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4441" e_stop="4391"/>
          <exon e_start="4286" e_stop="4187"/>
          <exon e_start="3452" e_stop="3363"/>
          <exon e_start="3229" e_stop="3009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCGGTATGCCCTCATTAAACCTTGTGTTTTCCGCTTCTGTTTCTAAATTTGAATAGTAGGACTCTTACTAACATGTTCTGCTGATGTACTTGTTCGCTTTTGTGAAGCTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAAAAGGTAAAAAAAGCAAGGATGAGAAGAACCCACAAGAAAGGACAATTGCCCGTCTGCAGGTTTGTGGTTCTGATTCTACTGCATTGATTTTAGGAATACAGGGTTATTTTCAAGATATTTAAGAGTCTTTTCAAACCCTTGAATGAAGCGGGTTGCGTCTTATGGGGTTGTTGCTAGTTAAGGGAGGATAACTCTTTGATGTTGGATTGGAAAGGAAGGAACAAAACTATTTTCATGTAATACTGAATTTCTGCTGTTGTTAGACAAGCCTAGTTGTCTATCTGGAACCTCTGAGAAAAATTCAGCTCTAAATGAAAAAACTTAATGGGAGTGGAAAACAACACAGCTCAAAGAAATTTGCATGGGCACAAAATTGTTCACCTTTTGCATTAGTATGTCTACTCATAGCTTGTGCAGCTAAAGACCTATACACAGCCTATTAAAGCTTTGATCCAACAAGAAGGATTTCTAGTTGCTGAATCGAAGTGAAACAGATACAATTAACTTGGAACCACAATTGAATATCCGTGAAACAGCTTTGCAATTAGCTACCAGTAGAATCCCAAGACAAAATCTCATGTTTTTTCTTTCCATTTGGGGTGAGGGTGTGAACTAATTTCATCTCTTATTTTGTCTTCGTTTTGTCCTTCCTATCTACGAGAGCTGTCATTATATTTGTCCCTAGTAATCAATCAGTTACATTTTGGATGAATGAAAATAGTTTCGATGGTGCCCATAGCTGTTGTTTTTTTGTGCATGCCAGCTTGACTTTTTGGTGTTTTCCGACTTACAGGAGTGTGGGCCTCGATTTACTCTCAAATTAATCAGTCTCCAGCATGGTACTTTTGATACTAAGGGTGGGGAATATGAATGGGTTCACAAGGTAATTCATGTGAAAAAAAGATGTCGTTTGTATATACTTTTCAACTGAGCTTATGCTTTTCCATACTTTAAATGGATTCTGAACTTGTTTGTCATTGGTGATAAATTCTCTGATCCATCCTGTTTTGTTTCAGCCGGAGATGGATACAAGTCGACGGAGATTTTTCCTGTGATAATGTTGGATGTTTCTGCTGCTGGGATTTCAAGGTCTTTGTACCCAAACCATGTTAAAGAAGAATACCAACTATCTGAGGCTGAAGTTCACTATAAAAGTTTTGATCTTTTCTAATTAACTGCTTTTTTTGTAATGGACTATCTCTTATAGTAATCTATTAAAGTAGAAAGATGGGTTTTA</genome_strand>
        <mrna_strand>AGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCG........................................................................................................CTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAAAAGGTAAAAAAAGCAAGGATGAGAAGAACCCACAAGAAAGGACAATTGCCCGTCTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGGGCCTCGATTTACTCTCAAATTAATCAGTCTCCAGCATGGTACTTTTGATACTAAGGGTGGGGAATATGAATGGGTTCACAAG.....................................................................................................................................CCGGAGATGGATACAAGTCGACGGAGATTTTTCCTGTGATAATGTTGGATGTTTCTGCTGCTGGGATTTCAAGGTCTTTGTACCCAAACCATGTTAAAGAAGAATACCAACTATCTGAGGCTGAAGTTCACTATAAAAGTTTTGATCTTTTCTAATTAACTGCTTTTTTTGTAATGGACTATCTCTTATAGTAATCTATTAAAGTAGAAAGATGGGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319679" ref_strand="+" ref_description="SGN-U319679        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | brix domain-containing protein, contains Pfam domain, PF04427: Brix domain | chr4:677054-679229 REVERSE | Aliases: F11O4.6, F11O4_6(evalue: 3e-88, score=321) genbank/nr: putative(evalue: 2e-116, score=421)">
      <seq>gccgtttagcttcactacaaaaccttcttccattttgctcttctccattagctccgccgccgacatcctctgcactacactttctatggggagaaaacggaacttgagcgaagatggtggcggggaagacgaagaagagaggccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagctgtacatgctaagttgaagcagcagaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgagaaaaaagcacttgagctaggggaggagcctccagcgaagatggtaccccgtacgattgagaatacaagggaatcagatgagactgtctgtttacctgatgatgaagagctatttgctggcaacgatgttgatgagtttagtgcagttctgaagaacgagcgtagtccaaaaatattgattacaacatcccgttataactctacaagaggaccagcatttatttccgatcttatttctgtgattcctaatgctcattactataaacgaggaacatatgacctgaaaaagatcgtccaatatgcaaatgagaaggaatttacttctgttattgtagtccacaccaatcgccgtgagccagatgctcttcttgtcattggtttacctgatggacctactgctcatttcaagctctcaaagctcatgctacggaaggatatcaagaatcatggaaagccaactagtcacaagcctgagctggttttgaccaacttcacaacacgtttgggtcatcgagttgggaggatgatacagtcactttttccacaagatcccgaatttcgtggacgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9387" stop="4142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9087" g_stop="8757" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="412" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.441" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="508" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="592" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6510" g_stop="6441" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="662" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6440" i_stop="6302" i_length="139">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6301" g_stop="6219" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="745" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6218" i_stop="4793" i_length="1426">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4792" g_stop="4713" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="825" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4712" i_stop="4490" i_length="223">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4489" g_stop="4442" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="873" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U319679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9087" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6441"/>
          <exon e_start="6301" e_stop="6219"/>
          <exon e_start="4792" e_stop="4713"/>
          <exon e_start="4489" e_stop="4442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTTAGCTTCACTACAAAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAGGTCATATTCTTGAACACATAGCTTTTTTTGATTCCTCTAAAAATAGCTATGGATTGTGTTCTTGCATTCATTCACCTTTCCAGTTTCTTTGTTGGTCTGAATTGCCAGCTTGATCATTTTTTTCATTTTCTTTCTTTAGATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAGGTTCGATAGTTCTCCTTCTAAATAGATCTTTCTCCCCCACCTTCACTGAAAAAATGCAGGGAAAGAAAAGGAACGTAGTAAGGGAACTTACAACTTATGCTGTTGTCTAATTGCTTCTGGTTGATGCATTTTACACTAAACATTACAGTTTTATTAATTCCTGCAAAAAGAATCAAATGAGAATGAGCTTGTCTTGAAGTCAGCTGAGTTGTATGAATTAAATCAACAGTCGAAGTTATTTGGTTCTCTTAGAAATTACTAATGTTTTCAAATAGATGATGTTGTGTCTGACTTTTTTGTGGAAATTTCATCCTATTGCATTGCCTCGTGCCATATTAACAATTAGTTTGGTTTTCCTCTACATTTTTTGTGAGTGATTTGCACGTATGTCATGCTGTCTTTGTACTATGATAATCAATCAGGTATCAAGAAGTTGTATTATGCAGGACAAGATTAAGTGCTACTCCCTACATTTCAAATTAATTGAAAATCAGTGAAATGTTGATGTGTTCCAACAAGGGAGTGAAGGTTAGGCTGCTAAAATTGAGATGTGAATGCTAAGATGGATGTACCGACATACGAGATTATATAAGATAAAAAATGATCACATTCGCCACAAAGTGCAAACAGCACACATTGAGGATACGATGAAAGAAAATCGTTTTGAGATGATTTGGTCATGTGCTGCGTTGACACCAGATACACCACAGTAAGTGAAGGTGATAAAATAGAAGAGATGGACCTAAACTTAAACGGAAGAAAGTTGTCTACAAAGACCTATGGTATCTTGAAATGAATGCTGAATTTGTGAAAGATATAACACAACAGTAGAGAAATATTTATATAGGTGAATATAAATTAATTGAGAATATATATTCTTTCCTTGGGGCCAACGCTTAGGACCATCTGCAGCCTTTGAACCTCGAGGATAATGGACTAAAATATGACCTCAACTAATAGCTTTCATGACTTGGTTCAAGTGACGAAGGTTGAGTGACTTGTGAGTTGTGACTTAGGTCAGAAGTTCAAGTCGCACGCCAATTCTAACCAAGCCTGGTACTTAAGTGGAGAAGGATGGAAAAACATACTTTAGTGTCAGCGGAATCACTAGGACATGCTCATTTTATTTTTTTGATACTAGACATGCTCATTTTAGCAAAAGTGAAAAAGTCTGTCTGGGATTATTTTTAAAAGGAGTCCACTTGAGAAGGTGAAAGCTGTGCGTTCTCTTCTTGGAGAGAGAAGCCTAATTTATTGCAAGTTAACCACCATTCAGAAAATTCCTTTTTCATAATGGTTCTAATGCTAATGCTGCTGTGTGTATCTATGTATAACTCAGCATAAGATGTTGTAAGTTAAAGCAATCAATCAATGAGGTTAATATGAATAGTAGATATTCAAGTAACGACTCCTTTTTTGCTTGCAGAATCATGGAAAGCCAACTAGTCACAAGCCTGAGCTGGTTTTGACCAACTTCACAACACGTTTGGGTCATCGAGTTGGGAGGTAGAGCCACTATGATTTTGCTGGATTACTGTAATTCTTGTAATTATTTCCAGCGACCAAGTATCTGAGACATTTTATACATTAATAAAAGTTGACACCATTTACTGATGGAGAGATAGAAATAAGATGAAAATCTATCTTTAACTTATAGCTCCTCTTTGAGAAACTTATGTTACAAGTGATTATCTAAGATAATAAATGTCTGCTGATTTTGTTCATGCAGGATGATACAGTCACTTTTTCCACAAGATCCCGAATTTCGTGGACGTCG</genome_strand>
        <mrna_strand>GCCGTTTAGCTTCACTACAAAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAG...........................................................................................................................................ATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATGGAAAGCCAACTAGTCACAAGCCTGAGCTGGTTTTGACCAACTTCACAACACGTTTGGGTCATCGAGTTGGGAG...............................................................................................................................................................................................................................GATGATACAGTCACTTTTTCCACAAGATCCCGAATTTCGTGGACGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336898" ref_strand="+" ref_description="SGN-U336898        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | brix domain-containing protein, contains Pfam domain, PF04427: Brix domain | chr4:677054-679229 REVERSE | Aliases: F11O4.6, F11O4_6(evalue: 2e-69, score=259) genbank/nr: putative(evalue: 9e-97, score=357)">
      <seq>gagctccgccgccgccctttaaagaattacactttctatggggagaaaacggaacttccccgaagatggtggcggggaagacgaagaagagaggccgatgaaagagagaagggtgaaagagaagcaggagggaagagaaagtatgcggccttcaatgattaagaacaaggagaaaagagcagctgtacatgctaagttgaagcagcagaagaaggttgagaagaggaagaaggttaaagctcgtgaagctgctgaaaaaaaagcacttgagctaggggaggagcctccagcgaaaatggtaccccgtacgattgagaatacaagggaatcaaatgagactgtctgtttacctgatgatgaaaagctatttgctggcaacgatgttgatgagtttagtgcagttctgaagaacgagcgtagtccaaaaatattgattacaacatcccgttataactctacaagaggaccggcatttatttccgatcttatttctgtgattcctaaggctcattactataaacgaggaacatttgacttgaaaaagatcgtccaatatgcaaatgagaaggattttacttctgttattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="9316" stop="6167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9039" g_stop="8757" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7113" g_stop="7033" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="364" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.441" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6919" g_stop="6824" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="460" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6731" g_stop="6648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="544" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6510" g_stop="6467" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="588" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U336898" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9039" e_stop="8757"/>
          <exon e_start="7113" e_stop="7033"/>
          <exon e_start="6919" e_stop="6824"/>
          <exon e_start="6731" e_stop="6648"/>
          <exon e_start="6510" e_stop="6467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAGGTAAAGCGTCTACTGAAATTTACAATTTTTACGGATTTGGGGTTTAGGGTTGATTTTGTGAATTGACATAATGGGGTTGTTTATTTGTGGGAATTGATTGATGGGTCGATGTGTTTTTTGTTCAAATTTAAAAAATATCTGGTTCTTAGGGTGTAGTGTTTTGATTCTTGATTGTGAGGTTGGGCATTGTGGGATTGTTTCTTAATGCTACTTAATTAATGGTTAGATGATGTTTTGGATTGTTTAACAAATAACAACAACATATGGTTGTATTTAATTACCAGTAGCAAATCATTGCAATTCAAGCTGCCAACACAGCATGCTTGGTTCTTAGATGGATCACACAGTGTACTAGAGCTCTAACATGTCTCTATTGCTCAGTACTTATAGCTAAGTAAAACTTTTCTAATGCTAGGTTGGGATCTAACAATAGTTATGTAGGCTAACTCTTTGGCCATACTTTCGACATGTCTACTCTTATTCACAAATACTCTATTGTTCCTTTTAATATACAGCCCATACACACATTTGGCCAAAATATTTTTTAAAGATTTGAGCTTGCTGCGAATTCCCTTTCCCATGTTGAATACTCCCTTGTAGAGAATGGGCCCAATCTGAAAATGGAAAGGCGTGCTGCTGGATCCACATAAGCAATTTGTTCCACAGGTATATGGAGAATGGGCGTTGCACAAATAAGTGCTCAATAGATTCTTCCTTACTCTGGCAAAATACACATATTTTAGGTACATCCAGACCCCATTTAGTTAGTCTATCTGTTGTTGCCAACTTCCTATGCAGCATGAGCCACATAATAAAGCACGCTTTAGGTCTGGCTCCATTTTGAACACAAGGCATTTCCATCCTATTCTGGGTTGGTCCACTACAGAAATAAGTATATTTTGTCTGATCAAGCTCCCCTTCCTGTTATCTCTTTGTTGCATTTGATCAACTATATTTGTCCGCCCGTAATCTTTCTGGTCATCCAGCTCGCTTGACTATGGGGAGTCCATGGAGTCTGGGAAGGTGATGCAGCCCTACTCCTATCTTACCTTCAGAACGTAAGTTTAAGTATGTGGAGCAAATACAGTAGCAAAGAAACCATGTTGAAAACAATTAAGAAGAGAACAAGTAGCGACAACAAATAACACGATAACTGATGCAAACGGGAACTAAACAAATGCTTTACTGCCTATCAATTAAAAACCAAACCGCAGAGCAAAAAGTTAAAAATCTTACCTGTTAAGCAACTCAGTCATTTGGCCCATAAAGTATTCATGATACTAAAGAGTCTCCCCATAACATTGCTCATGCATATCCCATGGAGAATGGTACAAACCCAGTTCCAGACTATCATGGGAATTAATTAATGGGTGGATGTTGTTTTTTGCCGTCACGTCTAAAATTTGAAAATATTTGGTTCTTAGGGTGTAATGTTTTGATTATTGATTATGCAGTTGAACATTTTGGGATTGTTTGTTAAGGGTATTTAGTTAATGGGTGAATGATATTTTTGTGAACTGGCTGCCTAAATTTCCAATATCCAGTTCTTAGGGTTTAAGGTTTTTGATTGTTGATTGTCTGATTGAGCATTTTAGTTCCTTTTTCCAAACTGCTTAACGGGTCGATGCTCTTTTTGTGAACAGCCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAGGTTTTCGATTATTCTTGTTTGATTCTTCAAGTTAATAGTGAAATATATGTAGTTTTATCACTGGAGGTTTGGCCATTAAATATTCTGGTGTTCCTCCTGATTTGTGTTTGAAGCTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACAGTAAGCTTGTATAATTTGTGCTTCCCTATTGCTTTGATTATTGTTGACTTTGAATTTAATTCCACAAATAATTTCGTTATTCCATTCTTCAGAGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAGGTTCTTTCTTGCCTTCTCTTTTCTCATTCCTTTTATGTTTCTTGGTGATATGAATGAATGCCCTCATATTATTCAAATTCAAGGAGTTTTTCCATTGTACTAGTTCGAAATGTTCATTGCTTTTCTAACTTTTGCAGATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGT</genome_strand>
        <mrna_strand>GAGCTCCGCCGCCGCCCTTTAAAGAATTACACTTTCTATGGGGAGAAAACGGAACTTCCCCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAAAAAAAAGCACTTGAGCTAGGGGAGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAGCGAAAATGGTACCCCGTACGATTGAGAATACAAGGGAATCAAATGAGACTGTCTGTTTACCTGATGATGAAAAG.................................................................................................................CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACA............................................................................................AGAGGACCGGCATTTATTTCCGATCTTATTTCTGTGATTCCTAAGGCTCATTACTATAAACGAGGAACATTTGACTTGAAAAAG.........................................................................................................................................ATCGTCCAATATGCAAATGAGAAGGATTTTACTTCTGTTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317454" ref_strand="+" ref_description="SGN-U317454        Tomato 200607 #1 [21 ESTs aligned] arabidopsis/peptide: | Symbol: None | xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative, similar to cellulase (xyloglucan endo-transglycosylase) GI:311835 from (Tropaeolum majus) | chr2:15479724-15481760 REVERSE | Aliases: T1J8.5, T1J8_5(evalue: 7e-104, score=374) genbank/nr: gi|42795464|gb|AAS46242.1| xyloglucan endotransglucosylase-hydrolase XTH6 [Lycopersicon esculentum] (evalue: 9e-148, score=526)">
      <seq>actcactcaacaccaaagtaccattaaaacaactttttggattttatatccaaacaattattatggaattccttctttatttacttttatttttcttactcaattcaagattaatcaattctcaaggtcccccttcacctggctactatcctagttctagggcacaatctataggatttaaccaaggttttagaaacctttggggtcctcaacatcaatcattggaccaaagtaccttaactatatggcttgataaaaattcaggaggaagtggttttaaatctctaaagaattatcgttccggttattttgggagtagtattaagctacaacctggttttactgctggaattattacttctttttatctttcaaataatcaagattatccggggaaccatgatgaaattgatattgaatttcttggaacaacaccaaacaagccatatactttacaaacaaatgtgtatataagaggaagtggagatggaaatattattggaagagaaatgaaatttcatctttggtttgatccaacaaaagattatcacaattatgcaatcctttgggaccccaatgagatcatattttttgtcgatgatgtccctattagaagataccctaaaaaaaatgatgcaacatttccacaaagacctatgtatgtctatggttcaatttgggatgcatcatcttgggcaacggaggaaggacgaattaaagcggattatcgataccaaccttttatcggaaaatatagtaataatttcaaggttgaaggttgcgcggcctacgagagtccctcttgtcgtcgagcgccttctagctctccttcggggggtggagggttgagtcgacaacagatagaggctatgttgtgggtgcataggaactataaggtgtacgattattgtagggatcctaggagggaccatactcacacacctgagtgttagtgtgtgaacgatcgtaaaataaaaaaaatattaaattgtatcgaatttatcgtttgaatataagggggaaaaaaagtagccttgagatggtcccatttgccattaattgttgcaaaaagttgttgaagcgtccaaggtgttcctttttttttttgattgaaatttatataaatgtattaaaaatgtttgatttaagtttcatgggagaaaaaaaagagtcaagaatattgaagaattatagaagatatatcttgccctattttctcatgaattgcttttaattgtaatttttatttgatcaaagtgtgtatttgtttctttatttgtgattgttgaagaaaaaaatatatatatattatattagccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="17269" stop="14127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16969" g_stop="16706" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16266" g_stop="16163" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="368" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16076" g_stop="15859" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="586" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15169" g_stop="14428" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="1327" r_length="741" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1328" polyA_stop="1337"/>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U317454" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1328</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16969" e_stop="16706"/>
          <exon e_start="16266" e_stop="16163"/>
          <exon e_start="16076" e_stop="15859"/>
          <exon e_start="15169" e_stop="14428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAGGTCTCACTTCTTCTCTTTCTTTTTTTATTTTTTTAGAAGTACGTTTAACGTCCCTCAAAATCTATAGATATGCTCTAAGACATTACTATCATGGCTACTATCAACCCGAGCCCTATGTAGTTGCTTGCTTAGAATTCTCGAAGGAATTAATGTGTATACATTGATGTTATATTGTTATCAGTTTGTGATAATAACATATAATTATGATATCAATTAAAGGTGGAGTGAGAATTTTTATTCTAAAATATAAATTTGTAGCTTTCTCTCTTACTCCGTCTTTATTATCAATTAATGCTATTATAGATACTTTTTTTTTATTTATGTAATTGTGATGTTTGTATCAATTTGCATCGTCGTATCACATTGGTTACATTTTTTCACTTTTCTTTATTACACATTTGTTTTTCTTTTTTAATTTATTCTATGTATTTGAATGCAGGAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTATGTGAGTATTTAATTTAATTTGATTTATTATTACAAAAAAAAAACATTTTTAGTTTTATTGATATATTATTAATATTTATTTTGTAGCTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCATGTTAGTATATTTTTTTTAAAAACTTCTTCTTTTTTTTTGCTTATGGTCTATTTTTTTTAGTCTTTTTCATAAATAGTTTAGTGTTAAAAAAATATGTTCAAAAGTAGAAATTTTTTAACGTACAGATACGTTGATAGTGTTACGAATTTCAAACTTAAGCAGTAAAACAATTTAAAATATTTTAATAATTATTGAAATTCATGACAGCGTTATACGAAATTCAAATTTGTAAAAAAAAAAAATACATAACAATGTTTTAGATTTTAAATTCTAACAATTAATTGAATTTGTGTTTATTGTTTGATTAGAAATATGAAAGTAACATTTCCAAATTGAGTGTAAAAGCTATTTTAGTACTATAGAAGATCACTCACTTTTTTATATTATATGTTAATACCAATATAGAAATTTGTGATTAATTCATAAGTGATTTTGACGGTGTAAAAATTTGTATATTTAATTCTAAATATAAATTTTAAAAATGTCACAACCATGGGGTCATGATATAATTATGCTATTTTTGTCAAAAAGCATTATTTTTCATAAATGTAACCAATATGACCCCATGTCCAAAAACAACAATAACAACTACTCTACTACTACTTTTTGTTTTTTGTTTTTTTTTTTCCTCTTGTGTGTCTTTGCTATTATTATTATTATTATTTATTTATTTGAATATGACTTTGTAGATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAGATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGGAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCCTTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGTAATTTTTATTTGATCAAAGTGTGTATTTGTTTCTTTATTTGTGATTGTTGAAGAAAAAAATATATATATATTATATTAGCCAAAAGAAA</genome_strand>
        <mrna_strand>ACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATTCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCCGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT......................................................................................CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAAATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGAAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCC-TTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGTAATTTTTATTTGATCAAAGTGTGTATTTGTTTCTTTATTTGTGATTGTTGAAGAAAAAAATATATATATATTATATTAGCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321999" ref_strand="+" ref_description="SGN-U321999        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | SNF7 family protein, contains Pfam domain, PF03357: SNF7 family | chr5:7681308-7682906 FORWARD | Aliases: MRN17.18, MRN17_18(evalue: 4e-85, score=311) genbank/nr: gi|15237175|ref|NP_197686.1| expressed protein [Arabidopsis thaliana] gi|10177242|dbj|BAB10616.1| contains similarity to unknown protein~emb|CAB89315.1~gene_id:MRN17.18 [Arabidopsis thaliana] gi|15451068|gb|AAK96805.1| Unknown protein [Arabidopsis thaliana] gi|22136128|gb|AAM91142.1| unknown protein [Arabidopsis thaliana](evalue: 3e-83, score=311)">
      <seq>aaataatattctttttggatcagaaaataattgaaattcgcgataaagaaaaattgttgttttgatcttccattgaagggttcattgatttctgagctttttggttcaaagggttttttcagaaaatggagaaagtaatgaatatattgaagccgaaaccgaatcctcaacagattttgagggattggcaacgtcggctacggcaagagtgtcggaatattgaacgtcaaattcgagatatacaaagggaggagaagaatgtacagaaagcaattaaagaagcagcaaagagaaatgatatgggttctgccaaggcacttgctaaagagattgtgagatctaaaaagactgtgaaccgattatacgagaataaggcgcagttgaattcaatatccatgcaccttggagaaagtgttgccattgctcgcacagtggggcatttgtctaagagcgctgaagtcatgaagctcgtcaataatcttattaaggctccagaagtggctatgacaatgcaggagtttagtaaagaaatgaccaaggctggtgtcatggaagaaatggtcaatgatgcggtggacagtgccctggattcagaagacatggaagaggaaattgaagaagaagttgacaaggtcctgactgcaattgctggtgaaactactgcacaattacctgaagcagtccgaaaggagaagttaaagcaacccgcccaggcagtggaggatgcagaggatgacgaagaagatctagaagaactaagggcacgtcttgctaaagttagatcctaagtgatttttaaaattgactcgcgctgcctctaaggcttcgatgtaaaatatgttgtgtgtgaaacaaagacctcttctatggtctgacgagttgcatcttctatctggaagagaggatattgaagtaccttctatatcttagaatcaatactcatgatttcttgtattgattatcaatgtgagttgtgatctttttctctttgagcatgcttttcattgtatggtaactgaaaatctatgctaacaacatttcttgctatttagaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="35891" stop="42781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36191" g_stop="36427" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36428" i_stop="36725" i_length="298">
            <donor d_prob="0.770" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36726" g_stop="36802" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="314" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36803" i_stop="38384" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38385" g_stop="38487" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="417" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38488" i_stop="40246" i_length="1759">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40247" g_stop="40368" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="539" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40369" i_stop="41867" i_length="1499">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41868" g_stop="42059" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="731" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42060" i_stop="42155" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42156" g_stop="42475" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="1051" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1053" polyA_stop="1081"/>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U321999" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1051</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36191" e_stop="36427"/>
          <exon e_start="36726" e_stop="36802"/>
          <exon e_start="38385" e_stop="38487"/>
          <exon e_start="40247" e_stop="40368"/>
          <exon e_start="41868" e_stop="42059"/>
          <exon e_start="42156" e_stop="42475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATATTCTTTTTGGATCAGAAAATAATTGAAATTCGCGATAAAGAAAAATTGTTGTTTTGATCTTCCATTGAAGGGTTCATTGATTTCTGAGCTTTTTGGTTCAAAGGGTTTTTTCAGAAAATGGAGAAAGTAATGAATATATTGAAGCCGAAACCGAATCCTCAACAGATTTTGAGGGATTGGCAACGTCGGCTCCGGCAAGAGTGTCGGAATATTGAACGTCAAATTCGAGGTGAATTGTATTTCTGTTAAATTGTTTGTAGTCAGGAAGGAAATGGGGGTTTTTGGGTTATTGTAAAAATTTGATTTTTATGTTGGGCTTTTTGAATTTTTCCTGTTTTGGGGTTTGTGGATTTTTCTTTAAGCCGAGGGTGTATTGGAAATAGCCTTTGTACATTTGAGCTAGGGTAAGGTTTACGTACGCTCTACACTTCCCGAGACACCACTTTGTGGGACTACAGTGTGTATGTTTTTTTTTTTTTTTGAATTGTTCTATTTTGGGTTTTGTGAATTTTCTGGATTTTGATTAGATATACAAAGGGAGGAGAAGAATGTACAGAAAGCAATTAAAGAAGCAGCAAAGAGAAATGATATGGGTTCTGCCAAGGTGACTTACTGCTCCTTTTAGATTGTTTATCTTGCTGTTTTGCTGTCGTTGTTTCCATCGTATCCTTTGTTGATCACATTTTTGAGCCGAGAGTGTATTGCAAACAACCTCTCTGTCCTAGAAAGGTGGCCATACCCCACTCGTGGATTATATTGGATATTTTGTTGTAGTTGAACTTCTTAGATTGAAAAACCAATCACATTTTTAGTTTTTGGTGGTGATGAATGCTTTTTTGTTGCCTGCTGATTCTTATAATCTTACTTTACAAGGGAGATATACTGAGAAATAGTTGTTGCTCGGGCTCTCTGAAATTGTTGTTGCACCCGTGTCGGATTCTCCAAAAGGCATGACTCTTGGATTATCCGATACACACCTGTCAACAGTTTTTATGAGTTCGAGCAACATAGGTCCAAAGTAAGTTCATAGAAATTGTGCCACTTTGGAGCTAGGAGAAGAAAAATATTGAATTTTCCTATAGTTAGATTATATATGTGATTAAATTACCTAAAGCATGGATCTTTAAGTTGTTTCTACTCTTTATGCCACTTTTTTCGCACTGGTTTCTTGCAAACTTGTGCTCATGGCTTATTGTTCTTGTTTATTATACTAGTTATTAGGTTCAATATGTTATTCTCATGCCTTCTAACAATAGTGAGATGATATTGGGAAGTTTTCTGAGTATGTAGAATATGCGGGAAACTATTAACTTCCAATGTGTTATTTCTCATAGTTGCTTGTTCATATTTTCAGAATTTAGGCATTTGCTAAAAGACCTGTGAGATCAATAAAAAAGGTTTTTAATTGCTTTACCTAGCCCCCTCTCCCTGTCATGCTTTAAATCTCGGTCTATAACACAGTTAAATTGAGAAATAGTCAATAGACTGAACTTGATGTTTGAAAATTTGTTATTTCAGATCAGGCAATGAAGAGGCATTTTTTTTTTATTGAACCAAGGTTATTTCATTAAATTAGAGGTATCTCCTGTATACAGGAAGTATACCAAAAAATCATGAGAACCTACACAACAATATGGTTCTCTACAAACTGTATCCAATTCCAATCTTCTACACAAATAGGGACCACATGGGCACACAAAAACTAAAACAAAGAACTGTTCCACTAGGGTACAACGCCATTTACTACTTCATGAAATGCTCTCCTATTCCTCTCCTCAAAACGATCCACATCAATGCAAGTGGAGTTATGTCTCATGTCCCGTGTCTTGTATTTTAAATGTTGCGAAATGAGAAAGAGAAGAAGGATGAATGCGCTGCTTTGAAGGCACTTTCTTCATCTGTCACAGTGTGCTTGACCATTGAGATGTTTTGCATATAACACTTGGCGTATTAGAACATCTATTTTGGGCCATTGATAGAGTTTCAGGTGGTTTAGAAACCAATATGCTTTTTCAGAAACTTCTAAGGAATGCCTATTTTAATAGTTAGATTAGTACTCATCCAAGATTTCTTCTAGTGTGTATGTTGCATTCAGTCTGATATTATACATTTTTATGAGACATGATTTATTGGTTTTTGGCATCCCATTGCTTATTCATATTGGAGTGTTGATGTTTTTGTCACAGGCACTTGCTAAAGAGATTGTGAGATCTAAAAAGACTGTGAACCGATTATACGAGAATAAGGCGCAGTTGAATTCAATATCCATGCACCTTGGAGAAAGTGTTGGTATGATCAAAGTCTTGCTTCTCCTGTTGTATATATGTATATGCTGTAGTATATTCAGGATTCTGCATTTGGTCCCCTAAGTTCTTGTTGATGAGCAAACTGTCTTTAGAACAATATGCATCCATTGAGAAGGTAGCACCATTATTTCTTGACAGGGATTAAGGATATCTATCTCATGTTGTATAATGAATAATTTTAAAAGTTCTCTTTCTTGGACAATGTATCAGTTGCTGGCGTGCAAATGCAATGTCTTATTTAAGGGAGTTTCAAGAGTGTCATCATATACAAGTCACATCAAATGTCTTGCTGATTTTGTTCGATTGTTGAATAGGTAGTTTGAACTTTGAAGAGTCATAATGTGTAATTATATAGATGTTCAAAATGCAGAAGTAGGATTTCATATTTTTCTTTATGATTTCGATTTCTTTAATAAGAGGTGAAAGTTATCACTTTATGCTGGTCAACCAGATGTTATTGTGGTGAAACTGACAAAATTCTGCGTTATTTATGACCGAAAAATCTGAAGGGAGCAACCCTTTGGGCCAACCGCAGCCTATGGAATTCAGGATGATGGGGCACCCCTCTACCCTTCTCCACTCAAATATTGAACTTAGTTCGCTTGGCGCAAGGTTCAAACTTGTAACCTAAGATACAAGTGCCTCAACCTTTGCCATCTGAGATAATCCCTGGAAGCAATACAATTCTTTCTGTTGAATTGATTCTGTGTAATAGTAGGAACATTCTACATATGACTGGCTGTCCCAAATACATTGATATCGGAACTTGTAAAGGAACCTCTTCCTAATAATAATAAGGTATCACCCAAGTGTGTCCTGGTGGTCAATGAAGTAGGAGGAGAAACATGACGTCTCAAGTTCAAATCCCTGCGGAATAAAAAACACTATGTGTTTTCTTCCATCTGTCTAAACCTTGGTGGACAGAATTACCTGGTACCTATTGCTGCTGGTGGGAGCTAGCAAATATCCCATGCAATTAGTCGAGGTGCATGTAAGCTGGCTTGGACGCCATGGTTATCAAAATTAACATGAGCTGCCATTACCTTGACTTTCATGATGGATGGTGACTGTACCAATCTTGATCTTAAGTGGAACTGGATCATGTGTTTACTCTAGTAGTTGGTTGTACTGATTGGCGAGGACTTCCTAAAGAAAAAGGAAAAGGAATCATTCTTATTTTTTCATATAGGAGAATTTCTTCTTTCAATGATACAGCCTACTGTAGTTGCAGAACTGATGTATGCTCCTTATATTTAGAAAAAATGCGTACTATGAAAAAAGCATCTTTAGCCTATGACAGTTTTTAATGATCAATTAGTTATGAACTTTTAGCCCCTGTTGCGTTATTAAGTTTATGGGAAACCAACTTTATTTTCTATATCTGAACTCCATGAAAAATTGCAATCATCTTTTCATGTCTGATAGGAGAACTTTTTTCTTCCTACTACCATATAATGAATTTATTCCAGAATTGTTTTTGTTTGCTATATGCTGTAACAGATTCTTAGTTAACAAGTTATTGCATATGTATATTAAGTTGGTGCTAGATTGTCTTACATTTTGAAATATTTGATAGCATGTTGGCGTGTCAACTGCTTTATACAGAATACCTATGTAGCTTGATTTTTTCTGTTTAGGAAAATAAACTGTATTATGAAGCCGGCCTCTTGCTTTCTACTTTAATGTTAGGTTATGTGTTGGCTTCTTCAAGTGTCCCATTGAACTTCTAATTGGTTTTGCAGCCATTGCTCGCACAGTGGGGCATTTGTCTAAGAGCGCTGAAGTCATGAAGCTCGTCAATAATCTTATGAAGGCTCCAGAAGTGGCTATGACAATGCAGGAGTTTAGTAAAGAAATGACCAAGGTATATCAGTTTGGTTTTAGCTTTTTGAGCTTCAATGAAGTTCTTGAGCTTTCCTCCTGGTTGGATGTTGCTATGGCTCTCTTATGCACTTTACTTTATCTTAAAAGTAATTCTGAAGTTCAATCTATGCAACAAGGTTTCCAACCATACAAGAATGTTTTTCAGTCTCAAGGTTTGCTAAAAATTACGATAAAGAAGTTTGACCACATATATAGTTAATAACTAAGCACGAGATAACAAAAGTTGCCCACAAAATTCCTTTCCTTCTGGCGGGCTAGCACCGTGTGTTGTGCCAAAGTTTCAAGCCAAGTGTTCGCGCTGTGTTGATGTTGCTAGCACACTTTGATTTTTGTGTCCCATTATGTTGCATTGCTTCAGAAGCCTCCCCAGCTTGTTGCATCTATGTCCAACACGGCGCGTTGGGCACTATTTACCAGCTTGTTTTTCTCCGAGTTGTTCAACACAATCCTCCAGCTTCCAAATATGGTATTCTTTGCATGAATCTTTGAGTGACTTGTTGAATACCCCTTCTAGTTGTATCCAAAATTCTTTAAGCTTCTTGATCTGCAATCCTTGGACGCTCTTGGCCTTTTAATGAGTTAGCAGTTCTTTGGACTCTTCAAATTCTTCCATAACTAGTCTTTAGGTATGAGCGTTGAACGTGTACCCCACATCATGAGTATACATTTTTTTTTATAATTGTGGTGTATGAGCCAGCTTGCGTGCACTGAGCACACAATTTTAGAAAATCGTATAGAAGAGTTGATCAATGTATTTGAGTCATAAATAAAAATTAAAGATAAGAGTGAGCTTCTAAAAAAGATGAATGTTTGATCTCATTTAGTTAGCTAAAAGAAATCCTGCCCTATGTAAGTCCTCACATGCCGTATCATGATTTTTAAGGACTTTTGTGGGGATATCTTATGGGAATTGATTTTATTGCTATGACCTAGTACTGAAAATAATCAAGTAACACAAAAATACTTCTATCACAATTCTTCAAAGATTTGTCAAATAAACACAAACTGAGACATTTACCCTACAGCTCCTAGGATGGCCCTAAAGTGTTTTTGGGAGGAGGCCGGGGGGGGGGGGGGATGGCCAATGGGCATCTCTGTGTGCATATAGATACAAAATTTAATGGGAAAAAGGTCAAATTTGTTCCTCTTCTATCTGAAAAGGATCAATTTTATCCTCTTCTATGCGAAGAAGATCCATTTGGTGATGTGCACTCACTTGGCATGCCACATTACCCCCAAACCATTTTACTTCATTTCCTCCGCTGCTTCTTCCACCACTAGAGCCACCTCCCCTCAACCACCATTGCCACCATCAACAACACCGTTTTCACTGTAGAGTGGACCAAAAGGGGAGTCTGTGGCTTGTCACATCATCCCCCCTCCCTCTTCTTCTTCTCTCTCTCTCTGTCACACACACACACACACACGCAAACACACTTTTTTTTAATCTGGAAATTACCCTTTCTCTTGTTATTGCAGGCTGGTGTCATGGAAGAAATGGTCAATGATGCGGTGGACAGTGCCCTGGATTCAGAAGACATGGAAGAGGAAATTGAAGAAGAAGTTGACAAGGTCCTGACTGCAATTGCTGGTGAAACTACTGCACAATTACCTGAAGCAGTCCGAAAGGAGAAGTTAAAGCAACCCGCCCAGGCAGTGGAGGATGCAGAGGTATGTTCCTTTCATCTGTGATTTATTGTATAGAATGATCCTTTCTGTGATCAAGCAAACTGAATTGATTAACGTTTGATTTGTTCTTTCTTGCAGGATGACGAAGAAGATCTAGAAGAACTAAGGGCACGTCTTGCTAAAGTTAGATCCTAAGTGATTTTTAAAATTGACTCGCGCTGCCTCTAAGGCTTCGATGTAAAATATGTTGTGTGTGAAACAAAGACCTCTTCTATGGTCTGACGAGTTGCATCTTCTATCTGGAAGAGAGGATATTGAAGTACCTTCTATATCTTAGAATCAATACTCATGATTTCTTGTATTGATTATCAATGTGAGTTGTGATCTTTTTCTCTTTGAGCATGCTTTTCATTGTATGGTAACTGAAAATCTATGCTAACAACATTTCTTGCTATTTA</genome_strand>
        <mrna_strand>AAATAATATTCTTTTTGGATCAGAAAATAATTGAAATTCGCGATAAAGAAAAATTGTTGTTTTGATCTTCCATTGAAGGGTTCATTGATTTCTGAGCTTTTTGGTTCAAAGGGTTTTTTCAGAAAATGGAGAAAGTAATGAATATATTGAAGCCGAAACCGAATCCTCAACAGATTTTGAGGGATTGGCAACGTCGGCTACGGCAAGAGTGTCGGAATATTGAACGTCAAATTCGAG..........................................................................................................................................................................................................................................................................................................ATATACAAAGGGAGGAGAAGAATGTACAGAAAGCAATTAAAGAAGCAGCAAAGAGAAATGATATGGGTTCTGCCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTGCTAAAGAGATTGTGAGATCTAAAAAGACTGTGAACCGATTATACGAGAATAAGGCGCAGTTGAATTCAATATCCATGCACCTTGGAGAAAGTGTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGCTCGCACAGTGGGGCATTTGTCTAAGAGCGCTGAAGTCATGAAGCTCGTCAATAATCTTATTAAGGCTCCAGAAGTGGCTATGACAATGCAGGAGTTTAGTAAAGAAATGACCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGTCATGGAAGAAATGGTCAATGATGCGGTGGACAGTGCCCTGGATTCAGAAGACATGGAAGAGGAAATTGAAGAAGAAGTTGACAAGGTCCTGACTGCAATTGCTGGTGAAACTACTGCACAATTACCTGAAGCAGTCCGAAAGGAGAAGTTAAAGCAACCCGCCCAGGCAGTGGAGGATGCAGAG................................................................................................GATGACGAAGAAGATCTAGAAGAACTAAGGGCACGTCTTGCTAAAGTTAGATCCTAAGTGATTTTTAAAATTGACTCGCGCTGCCTCTAAGGCTTCGATGTAAAATATGTTGTGTGTGAAACAAAGACCTCTTCTATGGTCTGACGAGTTGCATCTTCTATCTGGAAGAGAGGATATTGAAGTACCTTCTATATCTTAGAATCAATACTCATGATTTCTTGTATTGATTATCAATGTGAGTTGTGATCTTTTTCTCTTTGAGCATGCTTTTCATTGTATGGTAACTGAAAATCTATGCTAACAACATTTCTTGCTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="48006" stop="47069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47706" g_stop="47369" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47706" e_stop="47369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTTAACATGTAGCAACAACAAGTACTATATCATTAACAATTATCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318949" ref_strand="+" ref_description="SGN-U318949        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: SCPL48 | serine carboxypeptidase III, putative, similar to serine carboxypeptidase III from Oryza sativa SP:P37891, Matricaria chamomilla GI:6960455, Hordeum vulgare SP:P21529, Triticum aestivum SP:P11515; contains Pfam profile PF0450 serine carboxypeptidase | chr3:16477275-16479952 FORWARD | Aliases: F14D17.80, SCPL48(evalue: 1e-99, score=359) genbank/nr: gi|6960455|gb|AAD42963.2| serine carboxypeptidase precursor [Matricaria chamomilla](evalue: 1e-100, score=369)">
      <seq>ggatcccccgggctgcaggaaaaatgtcttcttcatcttcattattccctcttctctttgttgctatatttcttgttttatgttcccaaattgccctttcattatcacccaattttttcttacaatctcataatgatattattagtccaaagaaacttcaattaacaatgggtgaaaaattgattaggcaacttaatttgttccctaaacatgacattaatattgtttcttcaaaggacaataattatgaaaataaattatttgagaagaaattggatttatcttatcttggtgattctggtgccactgtccaagacttaggtcatcatgctggttattttcctcttataaacactaaatctgcaaggatgttctattttttctttgaatcaaggagtaacaagaatgatccagtagtgatatggttaacaggaggtccaggatgtagcagtgaattggcattattttatgaaaatggaccttttaaaatatcaaaaaatatgtctcttgtctggaatgattttggttgggacaaggtgtcaaaccttatatacgttgatcaaccaactggaactggtttcagttatacttctgatgaaagtgacattcgacacaatgagactggtgtaagcaatgacctttatgatttcctacaggccttcttcaatgctcatcctgagtatgtaaataatgatttctacattactggagaatcatatgctggacattatattcctgcatttgcttctagagttcatcaaggaaacataaagaaagaaggaattcacataaacctcaagggatttgctataggtaatggcctcaccaacccagaaatccagtataaagcttacaccgactattctttggatatgaaaattgatcaatcaaaccgactacgattatataaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="51515" stop="54896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51815" g_stop="52162" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="367" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52163" i_stop="52872" i_length="710">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52873" g_stop="53041" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="536" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53042" i_stop="54028" i_length="987">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54029" g_stop="54148" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="656" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54149" i_stop="54249" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54250" g_stop="54393" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="800" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54394" i_stop="54484" i_length="91">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54485" g_stop="54596" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="801" r_stop="913" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U318949" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51815" e_stop="52162"/>
          <exon e_start="52873" e_stop="53041"/>
          <exon e_start="54029" e_stop="54148"/>
          <exon e_start="54250" e_stop="54393"/>
          <exon e_start="54485" e_stop="54596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTCTTCTTCATCTTCATTATTCCCTCTTCTCTTTGTTGCTATATTTCTTGTTTTATGTTCCCAAATTGCCCTTTCATTATCACCCAATTTTTTCTTACAATCTCATAATGATATTATTAGTCCAAAGAAACTTCAATTAACAATGGGTGAAAAATTGATTAGGCAACTTAATTTGTTCCCTAAACATGACATTAATATTGTTTCTTCAAAGGACAATAATTATGAAAATAAATTATTTGAGAAGAAATTGGATTTATCTTATCTTGGTGATTCTGGTGCCACTGTCCAAGACTTAGGTCATCATGCTGGTTATTTTCCTCTTATAAACACTAAATCTGCAAGGTTTGATTATTTATCTTACATAATTATATATTATTGACTTTATTTATTAGAACAACGGTAAAATTCTTATCATGTATATAGTTACGAGTTTGGACCGTGAAATTAGCGGTTATTAGATTATATTCCTCGAAATGCGATCTTTTTTTATGAACCTTGTGTGAGTGTGTAATATTTCGTACTCCGAACTATCCCTTTTTCTTTTTTGGTTTAAAAGTAGGAGCCTTGAAGCAATGATATAAATTGTTTCTCGCTTGACCTATAGGTTATTGGTTTGAGTCATGTTGCGTCAAGATAGACTGATTAAATTACGTCCTTGTGGGATGCGGTCATTTCCCAGACCTTGTTACGGACAATATTTCATGCATTTTATTTGTTCTTTTTTTTAAAAGAAGAATCTTGAAAGAACGATCTAAGTAATTAGTATATTCCTATTAAAGTAGGATAATTAAATTACATCTCCTTATGACGATGTAATTCTTTTTTGAACCCAATATGAATGTGAAATACTTCCTCTACTAAGCAATCTTTTTTTTTTTTTGCTTCGAAAGGAGAGTCTAAGAGTACATATTAAAGTTATCTTTGTCTGACCATTAATATACAACTTACATTAAATACTCTTGAGGCATAGTCTTTCTTCAAATCTACATAAATACGAGATACTTCATGTACCAGACTATTCTTTTTAATTAATGTAATTTATTTTGTTGTAGGATGTTCTATTTTTTCTTTGAATCAAGGAGTAACAAGAATGATCCAGTAGTGATATGGTTAACAGGAGGTCCAGGATGTAGCAGTGAATTGGCATTATTTTATGAAAATGGACCTTTTAAAATATCAAAAAATATGTCTCTTGTCTGGAATGATTTTGGTTGGGACAAGGTAATTTTTTTGGATTTTTCCTAAATTAATACATGATTTTATTATCAACAAATTCATTTCAATTTTTTTTTTGAATATCATGATTATTTTATTCGCAACTTGTTAATTATTGATTGAATTTTTTTTCTTCCATTCATGTAAAGTCATTTTTTTTTATAGCTGAGAAATTCGTTTGTAATCCGCTTTTTAATCAATCACACCTTTCATGCGAAGTCAATTTTTTTTCACCAACTAACTAATCTTCTTTGACTGTTTTTGCTATTCATTAGTTGTGACTTAAATTAGAAAGAAAAAAATTTCAAAAATCTTGAAATCTAAAGTAGTTCAACTATTGTTATTGACTTATATGGTTTTTTTTTTTTTTTTTATATATATATAGTGCTCTATTTTCATTTAATTGTCTCCACAAAAATTAAAAAGCAAATGCTTTTTTGTCAAAGAATCCTTTTTTTAATGGTCAAGAATAAATAGTCTTGAATTAATCATAAAGTTATCTCTAAAAACAGAAAATGACATCGTATACTTAGAAGACTAAATTTTATATTTTATGTGTTAATATATCCTCTCAATTTCTTTATATATTTGAACTTAACCAAAAATCTAGCGATAGATTTGAGCTTTGCAACTCGTAAAGACAGAACGCTTTAGGTATAAAATTGTCTTTTATTAAAAAACAACCACTCCGTTTTAAAAACGATTCATTAATTAGGAATAAGAAGGATTTTTTGACGGAAAGCCTTTGAGCAATAACAAAATTATCTCTGTATGATTTATAAATTTCATGCTCAAACGATGAAATGAATCACTAAATGTTTGGATAGGTTAGCCTGCATTACACCCATTCACTATTTGTACTAACTACATTTTTTAAAAAAAGAAAAAGGATTTTACTCATAAAATAGTTGGTATAAAGAATTTTTACACTATCAACGTTCAAAAGTTAAACTCGGAAAATAATATTTCCATTTACTTGTTGCGAATCGACAGGTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAGGTTTGTTCCCTTCACCTCTTCTCGGTATTTCTCAGACTCCACTTGTGAGATTACACCAGTATGTAATCCGTAAAAATACGATGTATTTTACGATATGACAGGCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAGGTACTTTCTTTCCTATAACAAGTCGTTTTTTCGGGGTTTTTTTCGACTTGTTTTGGTTGGACAATATATATTTACATGCTACTTTGATCAGGGATTTGCTATAGGTAATGGCCTCACCAACCCAGAAATCCAGTATAAAGCTTACACCGACTATTCTTTGGATATG-AAATTGATCAATCAAACCGACTACGATTATATAAATC</genome_strand>
        <mrna_strand>AAAAATGTCTTCTTCATCTTCATTATTCCCTCTTCTCTTTGTTGCTATATTTCTTGTTTTATGTTCCCAAATTGCCCTTTCATTATCACCCAATTTTTTCTTACAATCTCATAATGATATTATTAGTCCAAAGAAACTTCAATTAACAATGGGTGAAAAATTGATTAGGCAACTTAATTTGTTCCCTAAACATGACATTAATATTGTTTCTTCAAAGGACAATAATTATGAAAATAAATTATTTGAGAAGAAATTGGATTTATCTTATCTTGGTGATTCTGGTGCCACTGTCCAAGACTTAGGTCATCATGCTGGTTATTTTCCTCTTATAAACACTAAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTCTATTTTTTCTTTGAATCAAGGAGTAACAAGAATGATCCAGTAGTGATATGGTTAACAGGAGGTCCAGGATGTAGCAGTGAATTGGCATTATTTTATGAAAATGGACCTTTTAAAATATCAAAAAATATGTCTCTTGTCTGGAATGATTTTGGTTGGGACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAG.....................................................................................................GCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAG...........................................................................................GGATTTGCTATAGGTAATGGCCTCACCAACCCAGAAATCCAGTATAAAGCTTACACCGACTATTCTTTGGATATGAAAATTGATCAATCAAACCGACTACGATTATATAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336672" ref_strand="+" ref_description="SGN-U336672        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: SCPL49 | serine carboxypeptidase III, putative, similar to serine carboxypeptidase III from Oryza sativa SP:P37891, Matricaria chamomilla GI:6960455, Hordeum vulgare SP:P21529, Triticum aestivum SP:P11515; contains Pfam profile PF0450 serine carboxypeptidase | chr3:3235296-3238089 REVERSE | Aliases: F13M14.32, SCPL49(evalue: 4e-22, score=102) genbank/nr: gi|100571|pir||A35275 carboxypeptidase C (EC 3.4.16.5) - barley(evalue: 9e-22, score=107)">
      <seq>tttttttttttttttttttttttttttgaaaaaagaacgaggattttactcataaaatagttggtataaaaaatttttacaccatcattgttcagaagttaaacgaaatataacgtgtcccttttacttgttgccaatcgacaggtgtcaaaccttatataccgggatgaaccaactggaactggtttcagttatccttctgatgaaagtgacattcgacacaatgagactggtgtaagcaatgacctttatgatttcctacaggtttgttcccttcaccccttgtcggtatttctcagaatccacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="53092" stop="54492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53392" g_stop="53412" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53413" i_stop="53904" i_length="492">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53905" g_stop="54192" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="308" r_length="287" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U336672" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53392" e_stop="53412"/>
          <exon e_start="53905" e_stop="54192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTTTTTTTTTATATATATATAGTGCTCTATTTTCATTTAATTGTCTCCACAAAAATTAAAAAGCAAATGCTTTTTTGTCAAAGAATCCTTTTTTTAATGGTCAAGAATAAATAGTCTTGAATTAATCATAAAGTTATCTCTAAAAACAGAAAATGACATCGTATACTTAGAAGACTAAATTTTATATTTTATGTGTTAATATATCCTCTCAATTTCTTTATATATTTGAACTTAACCAAAAATCTAGCGATAGATTTGAGCTTTGCAACTCGTAAAGACAGAACGCTTTAGGTATAAAATTGTCTTTTATTAAAAAACAACCACTCCGTTTTAAAAACGATTCATTAATTAGGAATAAGAAGGATTTTTTGACGGAAAGCCTTTGAGCAATAACAAAATTATCTCTGTATGATTTATAAATTTCATGCTCAAACGATGAAATGAATCACTAAATGTTTGGATAGGTTAGCCTGCATTACACCCATTCACTATTTGTACTAACTACATTTTTTAAAAAAAGAAAAAGGATTTTACTCATAAAATAGTTGGTATAAAGAATTTTTACACTATCAACGTTCAAAAGTTAAACTCGGAAAATAATATTTCCATT-TACTTGTTGCGAATCGACAGGTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAGGTTTGTTCCCTTCACCTCTTCTCGGTATTTCTCAGACTCCACTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTGAAAAAAGAACGAGGATTTTACTCATAAAATAGTTGGTATAAAAAATTTTTACACCATCATTGTTCAGAAGTTAAAC--GAAATATAACGTGTCCCTTTTACTTGTTGCCAATCGACAGGTGTCAAACCTTATATACCGGGATGAACCAACTGGAACTGGTTTCAGTTATCCTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAGGTTTGTTCCCTTCACCCCTTGTCGGTATTTCTCAGAATCCACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327929" ref_strand="+" ref_description="SGN-U327929        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:11983841-11984790 FORWARD | Aliases: None(evalue: 3e-31, score=131) genbank/nr: gi|52354279|gb|AAU44460.1| hypothetical protein AT2G28105 [Arabidopsis thaliana] >gi|61742618|gb|AAX55130.1| hypothetical protein At2g28105 [Arabidopsis thaliana] >gi|30683763|ref|NP_850112.1| expressed protein [Arabidopsis thaliana] (evalue: 2e-29, score=131)">
      <seq>atcaatctttcaccttccactgtacaattttcttgaacaaactgaatattctgaacaagaaaaactccatcaatgaatccagaaagctccaataacaacagccaaacaaaccctagaaaaagaccattagtagaagaacctaacaatgacaaacaaccaataacactaaattccatggtggtagccattgatcacaacaatctcttttacacagtttgttctatatgtgaaaagactctacctgacccttctccaaatacccatatccccaattcttcttcatcatcatcttcaatacccttttgcagaaattgcaacttcaactctgcttcttctggttccaaacgcctctttcgtgttcttatgtctatagctactgagaaaagagtggttgtggtgataatgtttgatagggcagctagggttttatttggttgttctgctgatgagttctttgattttgccaagactcacccttttgctgctgcagctgccggtaatgctttggagggagagatgttgaagatcaccttgtccaaaccaaagaatggaaatgcacgacatctacgagtggtatctgtttttccattgcggacaggttttcagcctgtgatcaagaccttgagggaacaatatcgagcaagatgcggttcatagctattgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="59866" stop="56673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59566" g_stop="59195" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59194" i_stop="59077" i_length="118">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59076" g_stop="58956" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="484" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58955" i_stop="57156" i_length="1800">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57155" g_stop="56973" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="667" r_length="183" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U327929" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59566" e_stop="59195"/>
          <exon e_start="59076" e_stop="58956"/>
          <exon e_start="57155" e_stop="56973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATCTTTCTCCTTCCACTGTACCATTTTCTTGAACAAACTGAATATTCTGAACAAGAAAAACTCCATCAATGAATCCAGAAAGCTCCAATAACAACAGCCAAACGAACCCTAGAAAAAGACCATTAGTAGAAGAACCTAGCAATGACAAACAACCAATAACACTAAATTCCATGGTGGTAGCCATTGATCACAACAATCTCTTTTACACAGTTTGTTCTATATGTGAAAAGACTCTACCTGACCCTTCTCCAAATACCCAAATCCCCAATTCTTCTTCTTCTTCTTCATCATCATCTTCAATACCCTTTTGCAAAAATTGCAACTTTAACTCTGCTTCTTCTGGTTCCAAACGCCTCTTTCGTGTTCTTGTATGTGAATTATTCTTTTTCTTTTCGTGTTGTTATCTGCAATGGTGATGCTTTTTTTGTTGGTTTTTGTCAAAGATTTGATTTTTTTTTGTGGGTGATTTTGGGTTTTTTTTTGCAGATGTCGATAGCTACTGAGAAAAGAGTGGTTGTGGTGATAATGTTTGATAGGGCAGCTAGGGTTTTGTTTGGTTGTTCTGCTGATGAGTTCTTTGATTTTGCCAAGACTCACCCTTTTGCTGGTAACTTTGATTAATCTCCCTTTTTATCTTTTAAAGTTGCACTGATGCATCATTTAGGAGATGTGTGAGAGGCTGGTTATAGCGGTTTTTAGGAGAGGTAGAAATAGGCTTAAGAAGAACTAGGGAGGTGATTAGATAGAATATAACACATATTTTGCTTACTACGACATGACCCTACACAAGGAGCGGTAGAAGTAGTCTTAAGAAGAACTAGGGAGGTGATTAGATAGAATATAACACATTTTACTTACTACGACATGACCCTACACAAGGAGAGGTAGAAGTAGGCTTAAGAAGAACTAGGGAGGTGATTAGAAAGAAGTAAGAACATGACACATAGTTTGCTTACTACGACATGACCCTACACAAGGAGAGCTGGAGAGGTAGAAGTAGGCGTAAGAAGAACTAGGGAGGTGATTATAAAGAACATGACACATAGTTTGCTTACTCCAACATGACCCTACACAAGGAGAGGTGGAAGTAGGATTAAGAAGGACTAGGGAGGTGATAAGAGAGAACATGACGCATATTTTGCTTACTACGGCATGACCCTACAAAGGAAGGTATGAAAGGCGAGAATTAGGTTAGAAGGGTAGTGAGTAGTCGAGAGATTTTCTATAGTAGGTTTTAGACGAGGTGAAAGTATGTTTTAGAAGAACTGAGAAAGGTGATTAGACAAAACGTGACATATTTTTAGCTTATTGAAGATTTGGGAAGGTATGGAGGTCAAGTATTAGGCTAGAAGGGTAAGTAATCGAGTGTTGTCGTACTTTTATGTTGTTGAGAAATGGGCTAGTCTACTCTCCTCATTTAGTAGTATTAGTTAGTATACCCAATGGGATTTTGCATTGGTATGTTGTTGTTACTACTTCCTGTTGTTTATTTTGTATTGTTTCTCTTGCTATTTTGTTATCCTTGTTTTCTTTTCAATCTGGCTTTGATTTCACTTCTCTTAAGTGGGGAGGGTCTATCGGAAACAACCTCTCTACCTCACAAACAAGGTAGGGGTAAGATCTGCATACATCCTATCCTCCCCAGACTACACTTGTGGGTATGTGGTTTTACTTTTTATAATTGCATTTTTCCAGTTTGAAGTTTACAGTGGCAATTTCACTTATGCTTGAAACAAGTCAACGGTATTGTTTGCAGGATATTTTTGGCTGCTAAATGAGATGCTGTAGAGAGTATACTAAACATAATATGAAAGTCAGTTCCTAGCCCATTATAGTGAAATGCTGTTAGAGACAAGTTTGACTGTAGTAGTAAATGAAATCACACTTTTTATACTTCCCTCTGTCATCAACAAGAGTTATAAATTTTTCTTTCCTTTAGGAATTCTATGAAACAAAAAAAAATGAAAGAAGTAGGAGATAATGGGGTAATGTTTCTGTAGGAATTGAAAATTCTAATGTAACTTACTCCCTCTGTCCCAATTTATGGGATAACTCTTTTTATTTGGAGATGTCCCGAGATGGTTGACACTTGACGCTATTTTATTGCCACACGACTTTCTTGACTTTCAAGTTTTCTAATTTATTAATCTTATTCAAGTTTCATGTTTTTGTTGAAATGTTTCTCCATCTAACTATACTCCAACAATCATTTTATTATTTTCTTCTACTATTTCTAAATGTAATATATAAGTTCAATTAGTATCTTAACATTCTCATATTAAATGGAACAGAGAGTATTTGGTCATGGTCCATAAAAAATTTTCCAAGAATCTTATAATTGCATCTTATAGTGTTTTGCTGGGCCATATGAAGAGGATTCTGACTTTTTGAGAATTCTTTTATGCAGCTGCAGCTGCCGGTAATGCTTTGGAGGGAGAGATGTTGAAGATCACCTTGTCCAAACCAAAGAATGGAAATGCACGACATCTACGAGTGGTATCAGTTTTTCCATTGCGGACAGGTTTTCAGCCTGTGATCAAGACCTTGAGGGAACTATATCGAGCAAGAGGCGGTTCATAGCTATTGCATT</genome_strand>
        <mrna_strand>ATCAATCTTTCACCTTCCACTGTACAATTTTCTTGAACAAACTGAATATTCTGAACAAGAAAAACTCCATCAATGAATCCAGAAAGCTCCAATAACAACAGCCAAACAAACCCTAGAAAAAGACCATTAGTAGAAGAACCTAACAATGACAAACAACCAATAACACTAAATTCCATGGTGGTAGCCATTGATCACAACAATCTCTTTTACACAGTTTGTTCTATATGTGAAAAGACTCTACCTGACCCTTCTCCAAATACCCATATCCCCAA---------TTCTTCTTCATCATCATCTTCAATACCCTTTTGCAGAAATTGCAACTTCAACTCTGCTTCTTCTGGTTCCAAACGCCTCTTTCGTGTTCTT......................................................................................................................ATGTCTATAGCTACTGAGAAAAGAGTGGTTGTGGTGATAATGTTTGATAGGGCAGCTAGGGTTTTATTTGGTTGTTCTGCTGATGAGTTCTTTGATTTTGCCAAGACTCACCCTTTTGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGCTGCCGGTAATGCTTTGGAGGGAGAGATGTTGAAGATCACCTTGTCCAAACCAAAGAATGGAAATGCACGACATCTACGAGTGGTATCTGTTTTTCCATTGCGGACAGGTTTTCAGCCTGTGATCAAGACCTTGAGGGAACAATATCGAGCAAGATGCGGTTCATAGCTATTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327844" ref_strand="+" ref_description="SGN-U327844        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G48120.1 | Symbol: None | calcineurin-like phosphoesterase family protein, contains Pfam profile: PF00149 calcineurin-like phosphoesterase | chr1:17777357-17783293 REVERSE | Aliases: F21D18.16, F21D18_16 (evalue: 2e-17, score=86.3) genbank/nr: mutator(evalue: 3e-22, score=108)">
      <seq>gtagtttttcaattttccaatattcttgaaaacccttctatttttctaattttttaaagtttttaaaagtcttttttttataaggcgggtatgaatttatttttaatttatttaattaattttatacttttatatgatattttggatatattcaatcttttgatacttatattaatgttaatattttttttattttttgtgtatagatatgcattcctcaaatgtatacgtacatcctggtccagtagagcatgatgtattaaaaattcaagttcatcatcgttccgaaggaatttggaatggtagtataaaagaagagaaatgttgcttatatacgcgtcgtggtgatatttaactttggcaacatttaaaatatcatccattacattctcgcatcgttcaatattttgaaaattgtagatttaaaggaattcttgatgttggatgtgtgccgtatgactccggatttatttctgctttaattgaaaggtggcgtccggaaactcatacttttcacatgcgaactgacgaggctaccataactttacaagatattgaaattttattcggaatggtagtagatggtagtcctataattttaaatggagctgattctttaaggattataggtagacaagaaatgatttttcaattaacaggatggttacccgatactagttgtttttctggtgttagtagattgtcaacatataaattgattgagtatatcgaaggtttggaagttattaacgataactcaactgagcatgaagttcaacaaagatttagattatatttattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="73030" stop="100594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73330" g_stop="74140" g_length="811"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="803" r_length="803" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U327844" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73330" e_stop="74140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTTTTCAATTTTCCAACATTCTTAAAAGCGTTTCTATTTTTCTAATTTTCTAAAGTTTTTAAAAGCCTTTTCTTTATAAGGTGAGTTTGAATTTATTTTATTTTTAATTTATTTAATTAATTTTATACTTTTTTATATGATATTGTGGATATATTCAATCTACTGATACTTATATTAATGTTAATATTTCTTTTTATTTTTTGTGTATCGATATGCATCCGTCAAATGTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTTAAGTTCATCATCGTTCCGAAGGAATTCGGAATGATAGCATAAAAGAAGAGAGGTCTTGCTTATATACGTGTCGTGGTGATATTGAATTTTGGCAACATATAAAATATCATCCATTACATTCTCGCATCCGTCAATATTTTGAAAATTGTGGATTAAAAGGAATTCTTGATGTAGGATGTGTGCCGTATGACTCCAGATTAATTTCTGCTTTAATTGAAAGGTGACGTCCAGAAACACACATTTTTCACATGCGAACTGGCGAGACTACCATAATTTTACAAGATGTTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAGGGATTATAGGTAGACAAGAAATGATATTTGAATTAACAGGATGGTTACCCGATACTGGTTGTTTTTCTGGTGTTAGTAGATTGTTAACATATAAATTGATTGATTATATTGAAGGTTTAGATGGTATTAATGATCACTCAACAGAGCATGAAGTGCAACATTGATTTAGATTATATTCATTAT</genome_strand>
        <mrna_strand>GTAGTTTTTCAATTTTCCAATATTCTTGAAAACCCTTCTATTTTTCTAATTTTTTAAAGTTTTTAAAAGTCTTTTTTTTATAAGGCGGGTATGAATTTA---T-TT-TTAATTTATTTAATTAATTTTATAC--TTTTATATGATATTTTGGATATATTCAATCTTTTGATACTTATATTAATGTTAATATTT-TTTTTATTTTTTGTGTATAGATATGCATTCCTCAAATGTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTCAAGTTCATCATCGTTCCGAAGGAATTTGGAATGGTAGTATAAAAGAAGAGAAATGTTGCTTATATACGCGTCGTGGTGATATTTAACTTTGGCAACATTTAAAATATCATCCATTACATTCTCGCATCGTTCAATATTTTGAAAATTGTAGATTTAAAGGAATTCTTGATGTTGGATGTGTGCCGTATGACTCCGGATTTATTTCTGCTTTAATTGAAAGGTGGCGTCCGGAAACTCATACTTTTCACATGCGAACTGACGAGGCTACCATAACTTTACAAGATATTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAAGGATTATAGGTAGACAAGAAATGATTTTTCAATTAACAGGATGGTTACCCGATACTAGTTGTTTTTCTGGTGTTAGTAGATTGTCAACATATAAATTGATTGAGTATATCGAAGGTTTGGAAGTTATTAACGATAACTCAACTGAGCATGAAGTTCAACAAAGATTTAGATTATATTTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="83928" stop="84819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84228" g_stop="84519" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84228" e_stop="84519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTCCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCGGCAGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACC-G----GCCA-GACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="84293" stop="85446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84593" g_stop="85146" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84593" e_stop="85146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGTCCATCTGATACTAGGGCAGTAACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTCGCTTATCTTAGTGGGTTGTCCGATCAGGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTCGAAATTGAAACCTCCAGTCATCAAGGGTGCGGAATCTGAGGATGCTTATGATTTTCTGGTTGACTATCATGAGCTACTACATAATATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="84920" stop="86924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85220" g_stop="85392" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85393" i_stop="86132" i_length="740">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86133" g_stop="86660" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85220" e_stop="85392"/>
          <exon e_start="86133" e_stop="86660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCAGTTACTGCATATGAGGCTAAGTTTTGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAAGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTCCAAGAAGTGGTAGACTTTGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGACTTCACCATGGCAACTACATCAAAAAGGTTTTGAAAGGGAGGTGATTTTAATGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGAGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATCGGACACATTAAGAGGTATTGTCCAAAATAGAGTTACAGACCTCCAAATGTTAGAGGTAGAGGTGGTTATGGAAGAGGTCGTCATTCTGGAGGACGCGGTGGTCGAAGTAATGGTGGTCACCAAAACGGTCGGGGTGATGGGAAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAAACAAACGAAAGGGCCCATTGTTACGCTTTCCCTGGGTGGTCAGAAGCGGAGACATCAGATGCTGTCATCGCAGGCTTTCGGTTTGTGATTGTATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCTTCATTTGCTAATGGTCTAAATTTACCTTGTGAATTACTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAAGTATATAGGTCTTGTTTGGTGAATTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGACTTTGATGTAATTTTGGGTATGACTTGGCTTTCACTGAATTTTGCAATCTTGGATGGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTCCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTGGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGTAGATCTTCCTGGTATGCCACCAGATAGGGATATCGATTCCTGTATTGATCTTGAACCGGAAACTCGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCACGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAGGGCTTCATTAGACCAAGTGCATCGCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="86943" stop="85602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86643" g_stop="85908" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86643" e_stop="85908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTTTCCGGTTCAAGATCAATACAGGAATCGATATCCCTATCTGGTGGCATACCAGGAAGATCTACAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCCAAACACCCTTTACTAACCATTTTCTTAGCACGAAGGAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACCATCCAAGATTGCAAAATTCAGTGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATACAATCACAAACCGAAA</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="86540" stop="85614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86240" g_stop="85910" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86240" e_stop="85910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACCATCCAAGATTGCAAAATTCAGTGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATACAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="87012" stop="85754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86712" g_stop="86054" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86712" e_stop="86054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTTTCCGGTTCAAGATCAATACAGGAATCGATATCCCTATCTGGTGGCATACCAGGAAGATCTACAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCCAAACACCCTTTACTAACCATTTTCTTAGCACGAAGGAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACCATCCAAGATTGCAAAATTCAGTGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="87532" stop="86220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87232" g_stop="86520" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87232" e_stop="86520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCCGTAGTAGCTAGCTAACCCAACAAAGCTTCTTATTTCTAACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCAGGTTCCTCCTTGCTCTTTGAGTAAACCAGTATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCACATACCTCGTTCGAAAAGCAGTCTTTGGCACATACGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATGTTAGAGAAGACACAAGCACCTTGTAACTGGTCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="89013" stop="88236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88713" g_stop="88537" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88713" e_stop="88537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGTGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAGCACTTGAATCGTTCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318979" ref_strand="+" ref_description="SGN-U318979        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-64, score=244) genbank/nr: Integrase,(evalue: 0, score=853)">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcaacgtttgagaagttgagatacaagattggaatgcgccgtctccaagatatcaagtaaagttttcatcagggggagtgaaatacgcgttgtactcttttccttaactatggttttgtcccaagttgggttttcctggtaaggtttttaatgaggcagcaaataaagcgtattatgtatatctatgtactttcttttacatagatatccaagggggagtgttgtaaaataattgtagtgtaaaataattgtagtgtcatgtggaatatgacatcactaatgaccttgtatgcattaatgtatggctataaatagccactatatgaaacatataaacacacactttgaaatgatatattttttaatattttttttttttttggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="97089" stop="53084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96789" g_stop="95007" g_length="1783"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1781" r_length="1781" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95006" i_stop="94951" i_length="56">
            <donor d_prob="0.000" d_score="0.69"/>
            <acceptor a_prob="0.000" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94950" g_stop="94898" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1782" r_stop="1830" r_length="49" r_score="0.736"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94897" i_stop="94801" i_length="97">
            <donor d_prob="0.000" d_score="0.74"/>
            <acceptor a_prob="0.328" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94800" g_stop="94762" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1831" r_stop="1866" r_length="36" r_score="0.538"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94761" i_stop="94399" i_length="363">
            <donor d_prob="0.900" d_score="0.54"/>
            <acceptor a_prob="0.998" a_score="0.48"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94398" g_stop="94270" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1867" r_stop="1990" r_length="124" r_score="0.535"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U318979" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>2004</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96789" e_stop="95007"/>
          <exon e_start="94950" e_stop="94898"/>
          <exon e_start="94800" e_stop="94762"/>
          <exon e_start="94398" e_stop="94270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATTTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATAGAAGAATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAGGGTATCAAGCCAGTGGGGTACAAATGGATTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGACATTGATTATATGGAGACATATTCTCTAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATCTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGATGTTGTCACAGCCTATCTATATGGTTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAGTCTCTGTATGGATTGAAAAAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTATAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTCGGGGTCTGAATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTTTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATACATTAAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAACTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATGTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAATAGGCTATTTGTTTACATGTGGAGACACAACAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGAAAGTCGAGAGTGCGTCT-GTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAATAAAATGGTGAGATAGAATTTCAACAAATTCGTTCAAGTGATAATCTTAATGATTTATTCACTAAGGCATTGCCAACATCAACGTTTGAGAAATTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGAGTTTTTCCTGGTAAGGTTTTTAACGAGGCAACATTCAAAGCGTATTATG-AGATATGTGTACTCTTTTTCCTTCATTAGGTTTTTTCCCACTGGATTTTTCCTAGTAAGGTTTTAACGAGGCACATAATCTATAAACATCCAAGGGGGAGTGTTGTAAATCCATTGTATATGTGGATGATCCATTAGAGTTATCCAACAATTAATTGGATTCATGTATTAGTGTTTCCAATGTGATAAGATATCAAGGTGATATGAACCTTGATGATAACTATGTAAATTTCAAGGTGACCT-TTGACTATGATATCTCAACACTATAAATAGAGATATCATTCACCATTGTATGATATACTTGAATAAGAAAATTATCTCCTCTATCTTATACTTCTTGTTTTTTTCTTCTTATATTCTGAGCTTTCTTTACAACATTGTGTAATTTATGGTCAAAATGAAAAATCTAGAATAATCCATACATGTCTTAATTTTTGTTTTGGGCTCATAAGGATATTATTATAATTTTTTTATAATGAAGAGTTTCTATTAATTGAACAAACAATAATGAATGTTAAGCCTGTTTTTACATACTTTTGAAAGAAAATTTTGAATTAATTAAAATAAAATATTTTTGAATAGTTAATATTTATTTATTTATTTTTATATTAATGTATTTTATTTTTTCTATTATATAGAAGAGTGAATGAAGCACGACCAGGGGCAAAAATGTAATTTAGTCTAACAAAAATCTATTAAGAAAAGATAATAAATATTTCTAGAAATCTCTTTCTTTATATAAAGTGAATAATGATCAAGAATAAAAA</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCAAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTG-GGTTTTCCTGGTAAGGTTTTTAATGAGGCAGCAAATAAAGCGTATTATGTATATCTATGTACT-TTCTT-TTACA-TAG........................................................ATATCCAAGGGGGAGTGTTGTAAAATAATTG--TA-GTGTAAAAT-AATTGTA.................................................................................................GTGTCATGTGGAATATGACATCACTA-A-T-GACCTTG-T...........................................................................................................................................................................................................................................................................................................................................................................ATGCATTAATGTATGGCTATAAATAGCCACTATATGAAACA-TATAA-ACACA-C-ACTTTGAAATGAT-ATATTTTTTAATATTTTTTTTTTTTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339612" ref_strand="+" ref_description="SGN-U339612        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: Integrase,(evalue: 9e-34, score=146)">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="98845" stop="97865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98532" g_stop="98165" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U339612" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98532" e_stop="98165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCACAGTAAACAAAAGGTTTACTAATTTTAATG-TTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="101555" stop="100505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101255" g_stop="100798" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101255" e_stop="100798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCAAATACAAAATTAAATTACAATACACA-GAAAAAAATATTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAATAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACTTTGAACTTTGATAGAAGAATCATATATACCCCTAAATA-ATTTTTT--ATAAATATTAGAAGTAATATATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATACGAGCCACTTTAATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAAACCCTTTTCCCTTTTATTTAAAATGAAATAA</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="102042" stop="102978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102342" g_stop="102678" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102342" e_stop="102678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCGAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCCCAATACCATACTCATTTGGGAATCATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCTGTACGTGACACTCCGATCCCCTAAATCTACGTGTCAG-TTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335077" ref_strand="+" ref_description="SGN-U335077        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aataaagaaaatagaaagaacaagagagagaggaagaatcgaacgagaagggagaaacaaagcttggagaaaaatttgcttgcttgatcactaatcttcggtggaggtaggttatggttttcatgctttcatagtaaactcttaatagagaatgatatgtattggtagtattgtaaaccctgctatatgcttaattgtatgcatgcatgaacgtgattatataattgtgattatattaagcatgatgaagttattgaatcccaaatcttgataaaaatctaatctcttattaatgatgatgccttggtatagaagaaggcttgatgaataaaagtaatgggattgatgatgccttggtatagagaaggcctgatgatttacagaatgatattagtggatcggagtgtcacgtaccgacacatgcaggggatcgggtgtcacgaaccgacacgtagaattaggggatcgggtgtcacgaactggcacgtagaattaggggatcgggtgtcacgaaccggcacgtagattaggggatcaggtgtcacgaaccgacacgtagaattaggggatcgggtgtcacgaaccgacacgtagaattaggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="110755" stop="102375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103338" g_stop="103022" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103021" i_stop="102972" i_length="50">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.521" a_score="0.98"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102971" g_stop="102675" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="605" r_length="293" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U335077" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103338" e_stop="103022"/>
          <exon e_start="102971" e_stop="102675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAAAATAGAAAGAACAAGAGAGAGAGGGAGAATCGAACGAGAAGGGAGAAACAAAGCTTGGAGAAAAATTTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTGTTTCATGCTTTCATGAGTAAACTCTTAATAGTGATTGATATGTATTGGTAGTATTGTAAACCCTACTATATGCTTAATGGTATG-TTGCATGAATATGATTATGTGATTGTGA-TAAAATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTGTAGAAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAGAAGGCTTGATGGTTTACAGAATGATATTAGTGGATCGG-GTGTCACGAACCGGCACGTAGAATTAAGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGAGTGTCATGAACCGACTCGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGAT</genome_strand>
        <mrna_strand>AATAAAGAAAATAGAAAGAACAAGAGAGAGAGGAAGAATCGAACGAGAAGGGAGAAACAAAGCTTGGAGAAAAATTTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGG-T-TTTCATGCTTTCAT-AGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATATGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAA-AAA-TCTAATCT-C-TTATTAATGATGATGCCTTGGTATAG..................................................AAGAAGGCTTGATGAATAAAAGTAATGGGATTGATGATGCCTTGGTATAGAGAAGGCCTGATGATTTACAGAATGATATTAGTGGATCGGAGTGTCACGTACCGACACAT-G---CAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGGCACGTAGAATTAGGGGATCGGGTGTCACGAACCGGCACGTAG-ATTAGGGGATCAGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="104209" stop="104986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104509" g_stop="104685" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104509" e_stop="104685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="105689" stop="107001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105989" g_stop="106701" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105989" e_stop="106701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACGAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGGTACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="106209" stop="107467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106509" g_stop="107167" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106509" e_stop="107167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGGTACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTTTAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATATAGAAGTCAATATCCCTATCCGATGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="108305" stop="106261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108005" g_stop="107833" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107832" i_stop="107089" i_length="744">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.084" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107088" g_stop="106561" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108005" e_stop="107833"/>
          <exon e_start="107088" e_stop="106561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTTGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCTACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACATCGACATCAAAAAGTCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAAGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGGGGCATATGATCGACTCCAAAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAGAAATTGTCCCAGACCAAGTTACAGACCCCCAATAACTAGAGGTAGAGGTGGTCATGGTAGAGACCGTTTTTCTGGAGGGCGTGGTGGTCGAGGTAATAGTGGTCACCAAAACGACAGAGGTAATGGGCAAACTGGAGCCACTACATCACAGCATGGTAGGGGCAATGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTTGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATCCGTGTCTCTACTCCGCTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGACGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCATCGGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTAAAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="106278" stop="107635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106578" g_stop="107335" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106578" e_stop="107335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTTTAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATATAGAAGTCAATATCCCTATCCGATGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCAGCGGAGTAGAGACACGGATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="106887" stop="108046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107188" g_stop="107746" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107188" e_stop="107746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGGATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGCTGTGATGTAGTGGCTCCAGTTTGCCCATTACCTCTGTCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGTCTCTACCATGACCACCTCTACCTCTAGTTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="106892" stop="108928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107192" g_stop="108628" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107192" e_stop="108628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGCTGTGATGTAGTGGCTCCAGTTTGCCCATTACCTCTGTCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGTCTCTACCATGACCACCTCTACCTCTAGTTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGACTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTAGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCAAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGATGGTGCCTCTATTGGTTGACACTCGACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCTGGAGCCTGAGGTGCTGGTGCAGAGAACACTAGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTCGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCTCTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="108932" stop="107779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108632" g_stop="108079" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108632" e_stop="108079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGAGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACGAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCTAGTGTTCTCTGCACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTCGAGTGTCAACCAATAGAGGCACCATCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="+" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="107967" stop="109000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108267" g_stop="108699" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108267" e_stop="108699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCTGGAGCCTGAGGTGCTGGTGCAGAGAACACTAGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTCGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCTCTGCCCTAGTATCAGATGGGCTAGGTGCTTGTCCTCTCCCTCTAGAGGACGTCCTCCCACGACCTCTTCCACGGCCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0249E07-l3oFl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C11HBa0249E07.1" temp_strand="-" temp_description="C11HBa0249E07.1  AC220059.1 htgs_phase:3 submitted_to_sgn_as:gi|170933589|gb|AC220059.1| sequenced_by:ivf-caas upload_account_name:china11 Solanum lycopersicum chromosome 11 clone C11HBa0249E07, complete sequence">
        <position start="109291" stop="108406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108991" g_stop="108706" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0249E07.1" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0249E07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108991" e_stop="108706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCAACTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACGTCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>33</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4441" PGL_stop="3009"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4441" e_stop="4391"/>
            <exon e_start="4286" e_stop="4187"/>
            <exon e_start="3452" e_stop="3363"/>
            <exon e_start="3229" e_stop="3009"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4441" e_stop="4391" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.951">
            <gDNA_intron_boundary i_start="4390" i_stop="4287" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4286" e_stop="4187" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.988">
            <gDNA_intron_boundary i_start="4186" i_stop="3453" i_length="734"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3452" e_stop="3363" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.975">
            <gDNA_intron_boundary i_start="3362" i_stop="3230" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3229" e_stop="3009" e_length="221"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4441" stop="4391"/>
              <exon start="4286" stop="4187"/>
              <exon start="3452" stop="3363"/>
              <exon start="3229" stop="3009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTGTGACCTTCCACAACCAGCGTGATTTCATATTTTTTCGCCATCATCG : CTACATTTTTGAAACCAAAGAGAGCAAACAGAAAGAATCAAAAGGTAAAAAAAGCAAGGATGAGAAGAACCCACAAGAAAGGACAATTGCCCGTCTGCAG : GAGTGTGGGCCTCGATTTACTCTCAAATTAATCAGTCTCCAGCATGGTACTTTTGATACTAAGGGTGGGGAATATGAATGGGTTCACAAG : CCGGAGATGGATACAAGTCGACGGAGATTTTTCCTGTGATAATGTTGGATGTTTCTGCTGCTGGGATTTCAAGGTCTTTGTACCCAAACCATGTTAAAGAAGAATACCAACTATCTGAGGCTGAAGTTCACTATAAAAGTTTTGATCTTTTCTAATTAACTGCTTTTTTTGTAATGGACTATCTCTTATAGTAATCTATTAAAGTAGAAAGATGGGTTTTA</gDNA_template>
            <first_frame> S  C  D  L  P  Q  P  A  *  F  H  I  F  S  P  S  S  :  L  H  F  *  N  Q  R  E  Q  T  E  R  I  K  R  *  K  K  Q  G  *  E  E  P  T  R  K  D  N  C  P  S  A   : G  V  W  A  S  I  Y  S  Q  I  N  Q  S  P  A  W  Y  F  *  Y  *  G  W  G  I  *  M  G  S  Q   : A  G  D  G  Y  K  S  T  E  I  F  P  V  I  M  L  D  V  S  A  A  G  I  S  R  S  L  Y  P  N  H  V  K  E  E  Y  Q  L  S  E  A  E  V  H  Y  K  S  F  D  L  F  *  L  T  A  F  F  V  M  D  Y  L  L  *  *  S  I  K  V  E  R  W  V  L </first_frame>
            <second_frame>  V  V  T  F  H  N  Q  R  D  F  I  F  F  R  H  H  R :   Y  I  F  E  T  K  E  S  K  Q  K  E  S  K  G  K  K  S  K  D  E  K  N  P  Q  E  R  T  I  A  R  L  Q  :  E  C  G  P  R  F  T  L  K  L  I  S  L  Q  H  G  T  F  D  T  K  G  G  E  Y  E  W  V  H  K  :  P  E  M  D  T  S  R  R  R  F  F  L  *  *  C  W  M  F  L  L  L  G  F  Q  G  L  C  T  Q  T  M  L  K  K  N  T  N  Y  L  R  L  K  F  T  I  K  V  L  I  F  S  N  *  L  L  F  L  *  W  T  I  S  Y  S  N  L  L  K  *  K  D  G  F   </second_frame>
            <third_frame>   L  *  P  S  T  T  S  V  I  S  Y  F  F  A  I  I   : A  T  F  L  K  P  K  R  A  N  R  K  N  Q  K  V  K  K  A  R  M  R  R  T  H  K  K  G  Q  L  P  V  C  R :   S  V  G  L  D  L  L  S  N  *  S  V  S  S  M  V  L  L  I  L  R  V  G  N  M  N  G  F  T  S :   R  R  W  I  Q  V  D  G  D  F  S  C  D  N  V  G  C  F  C  C  W  D  F  K  V  F  V  P  K  P  C  *  R  R  I  P  T  I  *  G  *  S  S  L  *  K  F  *  S  F  L  I  N  C  F  F  C  N  G  L  S  L  I  V  I  Y  *  S  R  K  M  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4440" stop="4391"/>
                    <exon start="4286" stop="4187"/>
                    <exon start="3452" stop="3363"/>
                    <exon start="3229" stop="3191"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVTFHNQRDFIFFRHHRYIFETKESKQKESKGKKSKDEKNPQERTIARLQECGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9087" PGL_stop="4442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9087" e_stop="8757"/>
            <exon e_start="7113" e_stop="7033"/>
            <exon e_start="6919" e_stop="6824"/>
            <exon e_start="6731" e_stop="6648"/>
            <exon e_start="6510" e_stop="6441"/>
            <exon e_start="6301" e_stop="6219"/>
            <exon e_start="4792" e_stop="4713"/>
            <exon e_start="4489" e_stop="4442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.441" e_score="1.000"/>
          <exon-intron don_prob="0.697" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9087" e_stop="8757" e_length="331"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.991">
            <gDNA_intron_boundary i_start="8756" i_stop="7114" i_length="1643"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7113" e_stop="7033" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.441">
            <gDNA_intron_boundary i_start="7032" i_stop="6920" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6919" e_stop="6824" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.697" acc_prob="0.967">
            <gDNA_intron_boundary i_start="6823" i_stop="6732" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6731" e_stop="6648" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6647" i_stop="6511" i_length="137"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6510" e_stop="6441" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.848" acc_prob="0.985">
            <gDNA_intron_boundary i_start="6440" i_stop="6302" i_length="139"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6301" e_stop="6219" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.973" acc_prob="0.995">
            <gDNA_intron_boundary i_start="6218" i_stop="4793" i_length="1426"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4792" e_stop="4713" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4712" i_stop="4490" i_length="223"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4489" e_stop="4442" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9087" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6441"/>
              <exon start="6301" stop="6219"/>
              <exon start="4792" stop="4713"/>
              <exon start="4489" stop="4442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9039" stop="8757"/>
              <exon start="7113" stop="7033"/>
              <exon start="6919" stop="6824"/>
              <exon start="6731" stop="6648"/>
              <exon start="6510" stop="6467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336898" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGTTTAGCTTCACTACAAAACCTTCTTCCATTTTGCTCTTCTCCATTAGCTCCGCCGCCGACATCCTCTGCACTACACTTTCTATGGGGAGAAAACGGAACTTGAGCGAAGATGGTGGCGGGGAAGACGAAGAAGAGAGGCCGATGAAAGAGAGAAGGGTGAAAGAGAAGCAGGAGGGAAGAGAAAGTATGCGGCCTTCAATGATTAAGAACAAGGAGAAAAGAGCAGCTGTACATGCTAAGTTGAAGCAGCAGAAGAAGGTTGAGAAGAGGAAGAAGGTTAAAGCTCGTGAAGCTGCTGAGAAAAAAGCACTTGAGCTAGGGGAGGAG : CCTCCAGCGAAGATGGTACCCCGTACGATTGAGAATACAAGGGAATCAGATGAGACTGTCTGTTTACCTGATGATGAAGAG : CTATTTGCTGGCAACGATGTTGATGAGTTTAGTGCAGTTCTGAAGAACGAGCGTAGTCCAAAAATATTGATTACAACATCCCGTTATAACTCTACA : AGAGGACCAGCATTTATTTCCGATCTTATTTCTGTGATTCCTAATGCTCATTACTATAAACGAGGAACATATGACCTGAAAAAG : ATCGTCCAATATGCAAATGAGAAGGAATTTACTTCTGTTATTGTAGTCCACACCAATCGCCGTGAGCCAG : ATGCTCTTCTTGTCATTGGTTTACCTGATGGACCTACTGCTCATTTCAAGCTCTCAAAGCTCATGCTACGGAAGGATATCAAG : AATCATGGAAAGCCAACTAGTCACAAGCCTGAGCTGGTTTTGACCAACTTCACAACACGTTTGGGTCATCGAGTTGGGAG : GATGATACAGTCACTTTTTCCACAAGATCCCGAATTTCGTGGACGTCG</gDNA_template>
            <first_frame> A  V  *  L  H  Y  K  T  F  F  H  F  A  L  L  H  *  L  R  R  R  H  P  L  H  Y  T  F  Y  G  E  K  T  E  L  E  R  R  W  W  R  G  R  R  R  R  E  A  D  E  R  E  K  G  E  R  E  A  G  G  K  R  K  Y  A  A  F  N  D  *  E  Q  G  E  K  S  S  C  T  C  *  V  E  A  A  E  E  G  *  E  E  E  E  G  *  S  S  *  S  C  *  E  K  S  T  *  A  R  G  G   : A  S  S  E  D  G  T  P  Y  D  *  E  Y  K  G  I  R  *  D  C  L  F  T  *  *  *  R   : A  I  C  W  Q  R  C  *  *  V  *  C  S  S  E  E  R  A  *  S  K  N  I  D  Y  N  I  P  L  *  L  Y   : K  R  T  S  I  Y  F  R  S  Y  F  C  D  S  *  C  S  L  L  *  T  R  N  I  *  P  E  K   : D  R  P  I  C  K  *  E  G  I  Y  F  C  Y  C  S  P  H  Q  S  P  *  A  R :   C  S  S  C  H  W  F  T  *  W  T  Y  C  S  F  Q  A  L  K  A  H  A  T  E  G  Y  Q   : E  S  W  K  A  N  *  S  Q  A  *  A  G  F  D  Q  L  H  N  T  F  G  S  S  S  W  E  :  D  D  T  V  T  F  S  T  R  S  R  I  S  W  T  S </first_frame>
            <second_frame>  P  F  S  F  T  T  K  P  S  S  I  L  L  F  S  I  S  S  A  A  D  I  L  C  T  T  L  S  M  G  R  K  R  N  L  S  E  D  G  G  G  E  D  E  E  E  R  P  M  K  E  R  R  V  K  E  K  Q  E  G  R  E  S  M  R  P  S  M  I  K  N  K  E  K  R  A  A  V  H  A  K  L  K  Q  Q  K  K  V  E  K  R  K  K  V  K  A  R  E  A  A  E  K  K  A  L  E  L  G  E  E  :  P  P  A  K  M  V  P  R  T  I  E  N  T  R  E  S  D  E  T  V  C  L  P  D  D  E  E  :  L  F  A  G  N  D  V  D  E  F  S  A  V  L  K  N  E  R  S  P  K  I  L  I  T  T  S  R  Y  N  S  T  :  R  G  P  A  F  I  S  D  L  I  S  V  I  P  N  A  H  Y  Y  K  R  G  T  Y  D  L  K  K  :  I  V  Q  Y  A  N  E  K  E  F  T  S  V  I  V  V  H  T  N  R  R  E  P   : D  A  L  L  V  I  G  L  P  D  G  P  T  A  H  F  K  L  S  K  L  M  L  R  K  D  I  K  :  N  H  G  K  P  T  S  H  K  P  E  L  V  L  T  N  F  T  T  R  L  G  H  R  V  G  R :   M  I  Q  S  L  F  P  Q  D  P  E  F  R  G  R   </second_frame>
            <third_frame>   R  L  A  S  L  Q  N  L  L  P  F  C  S  S  P  L  A  P  P  P  T  S  S  A  L  H  F  L  W  G  E  N  G  T  *  A  K  M  V  A  G  K  T  K  K  R  G  R  *  K  R  E  G  *  K  R  S  R  R  E  E  K  V  C  G  L  Q  *  L  R  T  R  R  K  E  Q  L  Y  M  L  S  *  S  S  R  R  R  L  R  R  G  R  R  L  K  L  V  K  L  L  R  K  K  H  L  S  *  G  R  S :   L  Q  R  R  W  Y  P  V  R  L  R  I  Q  G  N  Q  M  R  L  S  V  Y  L  M  M  K  S :   Y  L  L  A  T  M  L  M  S  L  V  Q  F  *  R  T  S  V  V  Q  K  Y  *  L  Q  H  P  V  I  T  L  Q :   E  D  Q  H  L  F  P  I  L  F  L  *  F  L  M  L  I  T  I  N  E  E  H  M  T  *  K  R :   S  S  N  M  Q  M  R  R  N  L  L  L  L  L  *  S  T  P  I  A  V  S  Q  :  M  L  F  L  S  L  V  Y  L  M  D  L  L  L  I  S  S  S  Q  S  S  C  Y  G  R  I  S  R :   I  M  E  S  Q  L  V  T  S  L  S  W  F  *  P  T  S  Q  H  V  W  V  I  E  L  G   : G  *  Y  S  H  F  F  H  K  I  P  N  F  V  D  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9086" stop="8757"/>
                    <exon start="7113" stop="7033"/>
                    <exon start="6919" stop="6824"/>
                    <exon start="6731" stop="6648"/>
                    <exon start="6510" stop="6441"/>
                    <exon start="6301" stop="6219"/>
                    <exon start="4792" stop="4713"/>
                    <exon start="4489" stop="4444"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFSFTTKPSSILLFSISSAADILCTTLSMGRKRNLSEDGGGEDEEERPMKERRVKEKQEGRESMRPSMIKNKEKRAAVHAKLKQQKKVEKRKKVKAREAAEKKALELGEEPPAKMVPRTIENTRESDETVCLPDDEELFAGNDVDEFSAVLKNERSPKILITTSRYNSTRGPAFISDLISVIPNAHYYKRGTYDLKKIVQYANEKEFTSVIVVHTNRREPDALLVIGLPDGPTAHFKLSKLMLRKDIKNHGKPTSHKPELVLTNFTTRLGHRVGRMIQSLFPQDPEFRGR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="16969" PGL_stop="14428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16969" e_stop="16706"/>
            <exon e_start="16266" e_stop="16163"/>
            <exon e_start="16076" e_stop="15859"/>
            <exon e_start="15169" e_stop="14428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.992" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.986" e_score="0.990"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="16969" e_stop="16706" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.992">
            <gDNA_intron_boundary i_start="16705" i_stop="16267" i_length="439"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="16266" e_stop="16163" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="16162" i_stop="16077" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16076" e_stop="15859" e_length="218"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="15858" i_stop="15170" i_length="689"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="15169" e_stop="14428" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16969" stop="16706"/>
              <exon start="16266" stop="16163"/>
              <exon start="16076" stop="15859"/>
              <exon start="15169" stop="14428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317454" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTCACTCAACACCAAAGTACCATTAAAACAACTTTTTGGATTTTATATCCAAACAATTATTATGGAATTCCTTCTTTATTTACTTTTATTTTTCTTACTCAATTCAAGATTAATCAATGCTCAAGGTCCCCCTTCACCTGGCTACTATCCTAGTTCTAGGGCACAATCTATAGGATTTAACCAAGGTTTTAGAAACCTTTGGGGTCCTCAACATCAATCATTGGACCAAAGTACCTTAACTATATGGCTTGATAAAAATTCAG : GAGGAAGTGGTTTTAAATCTCTAAAGAATTATCGTTCTGGTTATTTTGGGAGTAGTATTAAGCTACAACCTGGTTTTACTGCTGGAATTATTACTTCTTTTTAT : CTTTCAAATAATCAAGATTATCCGGGGAACCATGATGAAATTGATATTGAATTTCTTGGAACAACACCAAACAAGCCATATACTTTACAAACAAATGTGTATATAAGAGGAAGTGGAGATGGAAATATTATTGGAAGAGAAATGAAATTTCATCTTTGGTTTGATCCAACAAAAGATTATCACAATTATGCAATCCTTTGGGACCCCAATGAGATCAT : ATTTTTTGTCGATGATGTCCCTATTAGAAGATACCCTAAAAAAAATGATGCAACATTTCCACAAAGACCTATGTATGTCTATGGTTCAATTTGGGATGCATCATCTTGGGCAACGGAGGAAGGACGAATTAAAGCGGATTATCGATACCAACCTTTTATCGGAAAATATAGTAATAATTTCAAGGTTGAAGGTTGCGCGGCCTACGAGAGTCCCTCTTGTCGTCGAGCGCCTTCTAGCTCTCCTTCGGGGGGTGGAGGGTTGAGTCGACAACAGATAGAGGCTATGTTGTGGGTGCATAGGAACTATAAGGTGTACGATTATTGTAGGGATCCTAGGAGGGACCATACTCACACACCTGAGTGTTAGTGTGTGAACGATCGTAAAATAAAAAAGATATTAAATTGTATCGAATTTATCGTTTGAATATAAGGGGGGAAAAAAGTAGCCTTGAGATGGTCCCATTTGCCATTAATTGTTGCAAAAAGTTGTTGAAGCGTCCAAGGTGTTCCTTTTTTTTTTTTGATTGAAATTTATATAAATGTATTAAAAATGTTTGATTTAAGTTTCATGGGAGAAAAAAAAGAGTCAAGAATATTGAAGAATTATAGAAGATATATCTTGCCCTATTTTCTCATGAATTGCTTTTAATTGTAATTTTTATTTGATCAAAGTGTGTATTTGTTTCTTTATTTGTGATTGTTGAAGAAAAAAATATATATATATTATATTAGCCAAAAGAAA</gDNA_template>
            <first_frame> T  H  S  T  P  K  Y  H  *  N  N  F  L  D  F  I  S  K  Q  L  L  W  N  S  F  F  I  Y  F  Y  F  S  Y  S  I  Q  D  *  S  M  L  K  V  P  L  H  L  A  T  I  L  V  L  G  H  N  L  *  D  L  T  K  V  L  E  T  F  G  V  L  N  I  N  H  W  T  K  V  P  *  L  Y  G  L  I  K  I  Q  :  E  E  V  V  L  N  L  *  R  I  I  V  L  V  I  L  G  V  V  L  S  Y  N  L  V  L  L  L  E  L  L  L  L  F  I :   F  Q  I  I  K  I  I  R  G  T  M  M  K  L  I  L  N  F  L  E  Q  H  Q  T  S  H  I  L  Y  K  Q  M  C  I  *  E  E  V  E  M  E  I  L  L  E  E  K  *  N  F  I  F  G  L  I  Q  Q  K  I  I  T  I  M  Q  S  F  G  T  P  M  R  S   : Y  F  L  S  M  M  S  L  L  E  D  T  L  K  K  M  M  Q  H  F  H  K  D  L  C  M  S  M  V  Q  F  G  M  H  H  L  G  Q  R  R  K  D  E  L  K  R  I  I  D  T  N  L  L  S  E  N  I  V  I  I  S  R  L  K  V  A  R  P  T  R  V  P  L  V  V  E  R  L  L  A  L  L  R  G  V  E  G  *  V  D  N  R  *  R  L  C  C  G  C  I  G  T  I  R  C  T  I  I  V  G  I  L  G  G  T  I  L  T  H  L  S  V  S  V  *  T  I  V  K  *  K  R  Y  *  I  V  S  N  L  S  F  E  Y  K  G  G  K  K  *  P  *  D  G  P  I  C  H  *  L  L  Q  K  V  V  E  A  S  K  V  F  L  F  F  F  *  L  K  F  I  *  M  Y  *  K  C  L  I  *  V  S  W  E  K  K  K  S  Q  E  Y  *  R  I  I  E  D  I  S  C  P  I  F  S  *  I  A  F  N  C  N  F  Y  L  I  K  V  C  I  C  F  F  I  C  D  C  *  R  K  K  Y  I  Y  I  I  L  A  K  R   </first_frame>
            <second_frame>  L  T  Q  H  Q  S  T  I  K  T  T  F  W  I  L  Y  P  N  N  Y  Y  G  I  P  S  L  F  T  F  I  F  L  T  Q  F  K  I  N  Q  C  S  R  S  P  F  T  W  L  L  S  *  F  *  G  T  I  Y  R  I  *  P  R  F  *  K  P  L  G  S  S  T  S  I  I  G  P  K  Y  L  N  Y  M  A  *  *  K  F  R :   R  K  W  F  *  I  S  K  E  L  S  F  W  L  F  W  E  *  Y  *  A  T  T  W  F  Y  C  W  N  Y  Y  F  F  L   : S  F  K  *  S  R  L  S  G  E  P  *  *  N  *  Y  *  I  S  W  N  N  T  K  Q  A  I  Y  F  T  N  K  C  V  Y  K  R  K  W  R  W  K  Y  Y  W  K  R  N  E  I  S  S  L  V  *  S  N  K  R  L  S  Q  L  C  N  P  L  G  P  Q  *  D  H  :  I  F  C  R  *  C  P  Y  *  K  I  P  *  K  K  *  C  N  I  S  T  K  T  Y  V  C  L  W  F  N  L  G  C  I  I  L  G  N  G  G  R  T  N  *  S  G  L  S  I  P  T  F  Y  R  K  I  *  *  *  F  Q  G  *  R  L  R  G  L  R  E  S  L  L  S  S  S  A  F  *  L  S  F  G  G  W  R  V  E  S  T  T  D  R  G  Y  V  V  G  A  *  E  L  *  G  V  R  L  L  *  G  S  *  E  G  P  Y  S  H  T  *  V  L  V  C  E  R  S  *  N  K  K  D  I  K  L  Y  R  I  Y  R  L  N  I  R  G  E  K  S  S  L  E  M  V  P  F  A  I  N  C  C  K  K  L  L  K  R  P  R  C  S  F  F  F  F  D  *  N  L  Y  K  C  I  K  N  V  *  F  K  F  H  G  R  K  K  R  V  K  N  I  E  E  L  *  K  I  Y  L  A  L  F  S  H  E  L  L  L  I  V  I  F  I  *  S  K  C  V  F  V  S  L  F  V  I  V  E  E  K  N  I  Y  I  L  Y  *  P  K  E  </second_frame>
            <third_frame>   S  L  N  T  K  V  P  L  K  Q  L  F  G  F  Y  I  Q  T  I  I  M  E  F  L  L  Y  L  L  L  F  F  L  L  N  S  R  L  I  N  A  Q  G  P  P  S  P  G  Y  Y  P  S  S  R  A  Q  S  I  G  F  N  Q  G  F  R  N  L  W  G  P  Q  H  Q  S  L  D  Q  S  T  L  T  I  W  L  D  K  N  S   : G  G  S  G  F  K  S  L  K  N  Y  R  S  G  Y  F  G  S  S  I  K  L  Q  P  G  F  T  A  G  I  I  T  S  F  Y  :  L  S  N  N  Q  D  Y  P  G  N  H  D  E  I  D  I  E  F  L  G  T  T  P  N  K  P  Y  T  L  Q  T  N  V  Y  I  R  G  S  G  D  G  N  I  I  G  R  E  M  K  F  H  L  W  F  D  P  T  K  D  Y  H  N  Y  A  I  L  W  D  P  N  E  I  I :   F  F  V  D  D  V  P  I  R  R  Y  P  K  K  N  D  A  T  F  P  Q  R  P  M  Y  V  Y  G  S  I  W  D  A  S  S  W  A  T  E  E  G  R  I  K  A  D  Y  R  Y  Q  P  F  I  G  K  Y  S  N  N  F  K  V  E  G  C  A  A  Y  E  S  P  S  C  R  R  A  P  S  S  S  P  S  G  G  G  G  L  S  R  Q  Q  I  E  A  M  L  W  V  H  R  N  Y  K  V  Y  D  Y  C  R  D  P  R  R  D  H  T  H  T  P  E  C  *  C  V  N  D  R  K  I  K  K  I  L  N  C  I  E  F  I  V  *  I  *  G  G  K  K  V  A  L  R  W  S  H  L  P  L  I  V  A  K  S  C  *  S  V  Q  G  V  P  F  F  F  L  I  E  I  Y  I  N  V  L  K  M  F  D  L  S  F  M  G  E  K  K  E  S  R  I  L  K  N  Y  R  R  Y  I  L  P  Y  F  L  M  N  C  F  *  L  *  F  L  F  D  Q  S  V  Y  L  F  L  Y  L  *  L  L  K  K  K  I  Y  I  Y  Y  I  S  Q  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16967" stop="16706"/>
                    <exon start="16266" stop="16163"/>
                    <exon start="16076" stop="15859"/>
                    <exon start="15169" stop="14803"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLNTKVPLKQLFGFYIQTIIMEFLLYLLLFFLLNSRLINAQGPPSPGYYPSSRAQSIGFNQGFRNLWGPQHQSLDQSTLTIWLDKNSGGSGFKSLKNYRSGYFGSSIKLQPGFTAGIITSFYLSNNQDYPGNHDEIDIEFLGTTPNKPYTLQTNVYIRGSGDGNIIGREMKFHLWFDPTKDYHNYAILWDPNEIIFFVDDVPIRRYPKKNDATFPQRPMYVYGSIWDASSWATEEGRIKADYRYQPFIGKYSNNFKVEGCAAYESPSCRRAPSSSPSGGGGLSRQQIEAMLWVHRNYKVYDYCRDPRRDHTHTPEC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="36191" PGL_stop="42475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36191" e_stop="36427"/>
            <exon e_start="36726" e_stop="36802"/>
            <exon e_start="38385" e_stop="38487"/>
            <exon e_start="40247" e_stop="40368"/>
            <exon e_start="41868" e_stop="42059"/>
            <exon e_start="42156" e_stop="42475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.770" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="1.000" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="36191" e_stop="36427" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.770" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36428" i_stop="36725" i_length="298"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36726" e_stop="36802" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36803" i_stop="38384" i_length="1582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38385" e_stop="38487" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="38488" i_stop="40246" i_length="1759"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="40247" e_stop="40368" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.938" acc_prob="1.000">
            <gDNA_intron_boundary i_start="40369" i_stop="41867" i_length="1499"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41868" e_stop="42059" e_length="192"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42060" i_stop="42155" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42156" e_stop="42475" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36191" stop="36427"/>
              <exon start="36726" stop="36802"/>
              <exon start="38385" stop="38487"/>
              <exon start="40247" stop="40368"/>
              <exon start="41868" stop="42059"/>
              <exon start="42156" stop="42475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATAATATTCTTTTTGGATCAGAAAATAATTGAAATTCGCGATAAAGAAAAATTGTTGTTTTGATCTTCCATTGAAGGGTTCATTGATTTCTGAGCTTTTTGGTTCAAAGGGTTTTTTCAGAAAATGGAGAAAGTAATGAATATATTGAAGCCGAAACCGAATCCTCAACAGATTTTGAGGGATTGGCAACGTCGGCTCCGGCAAGAGTGTCGGAATATTGAACGTCAAATTCGAG : ATATACAAAGGGAGGAGAAGAATGTACAGAAAGCAATTAAAGAAGCAGCAAAGAGAAATGATATGGGTTCTGCCAAG : GCACTTGCTAAAGAGATTGTGAGATCTAAAAAGACTGTGAACCGATTATACGAGAATAAGGCGCAGTTGAATTCAATATCCATGCACCTTGGAGAAAGTGTTG : CCATTGCTCGCACAGTGGGGCATTTGTCTAAGAGCGCTGAAGTCATGAAGCTCGTCAATAATCTTATGAAGGCTCCAGAAGTGGCTATGACAATGCAGGAGTTTAGTAAAGAAATGACCAAG : GCTGGTGTCATGGAAGAAATGGTCAATGATGCGGTGGACAGTGCCCTGGATTCAGAAGACATGGAAGAGGAAATTGAAGAAGAAGTTGACAAGGTCCTGACTGCAATTGCTGGTGAAACTACTGCACAATTACCTGAAGCAGTCCGAAAGGAGAAGTTAAAGCAACCCGCCCAGGCAGTGGAGGATGCAGAG : GATGACGAAGAAGATCTAGAAGAACTAAGGGCACGTCTTGCTAAAGTTAGATCCTAAGTGATTTTTAAAATTGACTCGCGCTGCCTCTAAGGCTTCGATGTAAAATATGTTGTGTGTGAAACAAAGACCTCTTCTATGGTCTGACGAGTTGCATCTTCTATCTGGAAGAGAGGATATTGAAGTACCTTCTATATCTTAGAATCAATACTCATGATTTCTTGTATTGATTATCAATGTGAGTTGTGATCTTTTTCTCTTTGAGCATGCTTTTCATTGTATGGTAACTGAAAATCTATGCTAACAACATTTCTTGCTATTTA</gDNA_template>
            <first_frame> K  *  Y  S  F  W  I  R  K  *  L  K  F  A  I  K  K  N  C  C  F  D  L  P  L  K  G  S  L  I  S  E  L  F  G  S  K  G  F  F  R  K  W  R  K  *  *  I  Y  *  S  R  N  R  I  L  N  R  F  *  G  I  G  N  V  G  S  G  K  S  V  G  I  L  N  V  K  F  E  :  I  Y  K  G  R  R  R  M  Y  R  K  Q  L  K  K  Q  Q  R  E  M  I  W  V  L  P  R :   H  L  L  K  R  L  *  D  L  K  R  L  *  T  D  Y  T  R  I  R  R  S  *  I  Q  Y  P  C  T  L  E  K  V  L  :  P  L  L  A  Q  W  G  I  C  L  R  A  L  K  S  *  S  S  S  I  I  L  *  R  L  Q  K  W  L  *  Q  C  R  S  L  V  K  K  *  P  R :   L  V  S  W  K  K  W  S  M  M  R  W  T  V  P  W  I  Q  K  T  W  K  R  K  L  K  K  K  L  T  R  S  *  L  Q  L  L  V  K  L  L  H  N  Y  L  K  Q  S  E  R  R  S  *  S  N  P  P  R  Q  W  R  M  Q  R :   M  T  K  K  I  *  K  N  *  G  H  V  L  L  K  L  D  P  K  *  F  L  K  L  T  R  A  A  S  K  A  S  M  *  N  M  L  C  V  K  Q  R  P  L  L  W  S  D  E  L  H  L  L  S  G  R  E  D  I  E  V  P  S  I  S  *  N  Q  Y  S  *  F  L  V  L  I  I  N  V  S  C  D  L  F  L  F  E  H  A  F  H  C  M  V  T  E  N  L  C  *  Q  H  F  L  L  F  </first_frame>
            <second_frame>  N  N  I  L  F  G  S  E  N  N  *  N  S  R  *  R  K  I  V  V  L  I  F  H  *  R  V  H  *  F  L  S  F  L  V  Q  R  V  F  S  E  N  G  E  S  N  E  Y  I  E  A  E  T  E  S  S  T  D  F  E  G  L  A  T  S  A  P  A  R  V  S  E  Y  *  T  S  N  S  R :   Y  T  K  G  G  E  E  C  T  E  S  N  *  R  S  S  K  E  K  *  Y  G  F  C  Q   : G  T  C  *  R  D  C  E  I  *  K  D  C  E  P  I  I  R  E  *  G  A  V  E  F  N  I  H  A  P  W  R  K  C  C :   H  C  S  H  S  G  A  F  V  *  E  R  *  S  H  E  A  R  Q  *  S  Y  E  G  S  R  S  G  Y  D  N  A  G  V  *  *  R  N  D  Q   : G  W  C  H  G  R  N  G  Q  *  C  G  G  Q  C  P  G  F  R  R  H  G  R  G  N  *  R  R  S  *  Q  G  P  D  C  N  C  W  *  N  Y  C  T  I  T  *  S  S  P  K  G  E  V  K  A  T  R  P  G  S  G  G  C  R   : G  *  R  R  R  S  R  R  T  K  G  T  S  C  *  S  *  I  L  S  D  F  *  N  *  L  A  L  P  L  R  L  R  C  K  I  C  C  V  *  N  K  D  L  F  Y  G  L  T  S  C  I  F  Y  L  E  E  R  I  L  K  Y  L  L  Y  L  R  I  N  T  H  D  F  L  Y  *  L  S  M  *  V  V  I  F  F  S  L  S  M  L  F  I  V  W  *  L  K  I  Y  A  N  N  I  S  C  Y  L </second_frame>
            <third_frame>   I  I  F  F  L  D  Q  K  I  I  E  I  R  D  K  E  K  L  L  F  *  S  S  I  E  G  F  I  D  F  *  A  F  W  F  K  G  F  F  Q  K  M  E  K  V  M  N  I  L  K  P  K  P  N  P  Q  Q  I  L  R  D  W  Q  R  R  L  R  Q  E  C  R  N  I  E  R  Q  I  R   : D  I  Q  R  E  E  K  N  V  Q  K  A  I  K  E  A  A  K  R  N  D  M  G  S  A  K  :  A  L  A  K  E  I  V  R  S  K  K  T  V  N  R  L  Y  E  N  K  A  Q  L  N  S  I  S  M  H  L  G  E  S  V   : A  I  A  R  T  V  G  H  L  S  K  S  A  E  V  M  K  L  V  N  N  L  M  K  A  P  E  V  A  M  T  M  Q  E  F  S  K  E  M  T  K  :  A  G  V  M  E  E  M  V  N  D  A  V  D  S  A  L  D  S  E  D  M  E  E  E  I  E  E  E  V  D  K  V  L  T  A  I  A  G  E  T  T  A  Q  L  P  E  A  V  R  K  E  K  L  K  Q  P  A  Q  A  V  E  D  A  E  :  D  D  E  E  D  L  E  E  L  R  A  R  L  A  K  V  R  S  *  V  I  F  K  I  D  S  R  C  L  *  G  F  D  V  K  Y  V  V  C  E  T  K  T  S  S  M  V  *  R  V  A  S  S  I  W  K  R  G  Y  *  S  T  F  Y  I  L  E  S  I  L  M  I  S  C  I  D  Y  Q  C  E  L  *  S  F  S  L  *  A  C  F  S  L  Y  G  N  *  K  S  M  L  T  T  F  L  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36286" stop="36427"/>
                    <exon start="36726" stop="36802"/>
                    <exon start="38385" stop="38487"/>
                    <exon start="40247" stop="40368"/>
                    <exon start="41868" stop="42059"/>
                    <exon start="42156" stop="42212"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFWFKGFFQKMEKVMNILKPKPNPQQILRDWQRRLRQECRNIERQIRDIQREEKNVQKAIKEAAKRNDMGSAKALAKEIVRSKKTVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEVAMTMQEFSKEMTKAGVMEEMVNDAVDSALDSEDMEEEIEEEVDKVLTAIAGETTAQLPEAVRKEKLKQPAQAVEDAEDDEEDLEELRARLAKVRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="47706" PGL_stop="47369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47706" e_stop="47369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="47706" e_stop="47369" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47706" stop="47369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTTAACATGTAGCAACAACAAGTACTATATCATTAACAATTATCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  *  H  V  A  T  T  S  T  I  S  L  T  I  I  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  Q  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  D   </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  V  L  Y  H  *  Q  L  S  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  L  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="51815" PGL_stop="54596"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51815" e_stop="52162"/>
            <exon e_start="52873" e_stop="53041"/>
            <exon e_start="54029" e_stop="54148"/>
            <exon e_start="54250" e_stop="54393"/>
            <exon e_start="54485" e_stop="54596"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51815" e_stop="52162" e_length="348"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.985">
            <gDNA_intron_boundary i_start="52163" i_stop="52872" i_length="710"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52873" e_stop="53041" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.937" acc_prob="0.750">
            <gDNA_intron_boundary i_start="53042" i_stop="54028" i_length="987"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54029" e_stop="54148" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.939">
            <gDNA_intron_boundary i_start="54149" i_stop="54249" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54250" e_stop="54393" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54394" i_stop="54484" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="54485" e_stop="54596" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51815" stop="52162"/>
              <exon start="52873" stop="53041"/>
              <exon start="54029" stop="54148"/>
              <exon start="54250" stop="54393"/>
              <exon start="54485" stop="54596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318949" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATGTCTTCTTCATCTTCATTATTCCCTCTTCTCTTTGTTGCTATATTTCTTGTTTTATGTTCCCAAATTGCCCTTTCATTATCACCCAATTTTTTCTTACAATCTCATAATGATATTATTAGTCCAAAGAAACTTCAATTAACAATGGGTGAAAAATTGATTAGGCAACTTAATTTGTTCCCTAAACATGACATTAATATTGTTTCTTCAAAGGACAATAATTATGAAAATAAATTATTTGAGAAGAAATTGGATTTATCTTATCTTGGTGATTCTGGTGCCACTGTCCAAGACTTAGGTCATCATGCTGGTTATTTTCCTCTTATAAACACTAAATCTGCAAG : GATGTTCTATTTTTTCTTTGAATCAAGGAGTAACAAGAATGATCCAGTAGTGATATGGTTAACAGGAGGTCCAGGATGTAGCAGTGAATTGGCATTATTTTATGAAAATGGACCTTTTAAAATATCAAAAAATATGTCTCTTGTCTGGAATGATTTTGGTTGGGACAAG : GTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAG : GCCTTCTTCAATGCTCATCCTGAGTATGTAAATAATGATTTCTACATTACTGGAGAATCATATGCTGGACATTATATTCCTGCATTTGCTTCTAGAGTTCATCAAGGAAACATAAAGAAAGAAGGAATTCACATAAACCTCAAG : GGATTTGCTATAGGTAATGGCCTCACCAACCCAGAAATCCAGTATAAAGCTTACACCGACTATTCTTTGGATATGAAATTGATCAATCAAACCGACTACGATTATATAAATC</gDNA_template>
            <first_frame> K  N  V  F  F  I  F  I  I  P  S  S  L  C  C  Y  I  S  C  F  M  F  P  N  C  P  F  I  I  T  Q  F  F  L  T  I  S  *  *  Y  Y  *  S  K  E  T  S  I  N  N  G  *  K  I  D  *  A  T  *  F  V  P  *  T  *  H  *  Y  C  F  F  K  G  Q  *  L  *  K  *  I  I  *  E  E  I  G  F  I  L  S  W  *  F  W  C  H  C  P  R  L  R  S  S  C  W  L  F  S  S  Y  K  H  *  I  C  K  :  D  V  L  F  F  L  *  I  K  E  *  Q  E  *  S  S  S  D  M  V  N  R  R  S  R  M  *  Q  *  I  G  I  I  L  *  K  W  T  F  *  N  I  K  K  Y  V  S  C  L  E  *  F  W  L  G  Q   : G  V  K  P  Y  I  R  *  S  T  N  W  N  W  F  Q  L  Y  F  *  *  K  *  H  S  T  Q  *  D  W  C  K  Q  *  P  L  *  F  P  T   : G  L  L  Q  C  S  S  *  V  C  K  *  *  F  L  H  Y  W  R  I  I  C  W  T  L  Y  S  C  I  C  F  *  S  S  S  R  K  H  K  E  R  R  N  S  H  K  P  Q   : G  I  C  Y  R  *  W  P  H  Q  P  R  N  P  V  *  S  L  H  R  L  F  F  G  Y  E  I  D  Q  S  N  R  L  R  L  Y  K   </first_frame>
            <second_frame>  K  M  S  S  S  S  S  L  F  P  L  L  F  V  A  I  F  L  V  L  C  S  Q  I  A  L  S  L  S  P  N  F  F  L  Q  S  H  N  D  I  I  S  P  K  K  L  Q  L  T  M  G  E  K  L  I  R  Q  L  N  L  F  P  K  H  D  I  N  I  V  S  S  K  D  N  N  Y  E  N  K  L  F  E  K  K  L  D  L  S  Y  L  G  D  S  G  A  T  V  Q  D  L  G  H  H  A  G  Y  F  P  L  I  N  T  K  S  A  R :   M  F  Y  F  F  F  E  S  R  S  N  K  N  D  P  V  V  I  W  L  T  G  G  P  G  C  S  S  E  L  A  L  F  Y  E  N  G  P  F  K  I  S  K  N  M  S  L  V  W  N  D  F  G  W  D  K  :  V  S  N  L  I  Y  V  D  Q  P  T  G  T  G  F  S  Y  T  S  D  E  S  D  I  R  H  N  E  T  G  V  S  N  D  L  Y  D  F  L  Q  :  A  F  F  N  A  H  P  E  Y  V  N  N  D  F  Y  I  T  G  E  S  Y  A  G  H  Y  I  P  A  F  A  S  R  V  H  Q  G  N  I  K  K  E  G  I  H  I  N  L  K  :  G  F  A  I  G  N  G  L  T  N  P  E  I  Q  Y  K  A  Y  T  D  Y  S  L  D  M  K  L  I  N  Q  T  D  Y  D  Y  I  N  </second_frame>
            <third_frame>   K  C  L  L  H  L  H  Y  S  L  F  S  L  L  L  Y  F  L  F  Y  V  P  K  L  P  F  H  Y  H  P  I  F  S  Y  N  L  I  M  I  L  L  V  Q  R  N  F  N  *  Q  W  V  K  N  *  L  G  N  L  I  C  S  L  N  M  T  L  I  L  F  L  Q  R  T  I  I  M  K  I  N  Y  L  R  R  N  W  I  Y  L  I  L  V  I  L  V  P  L  S  K  T  *  V  I  M  L  V  I  F  L  L  *  T  L  N  L  Q   : G  C  S  I  F  S  L  N  Q  G  V  T  R  M  I  Q  *  *  Y  G  *  Q  E  V  Q  D  V  A  V  N  W  H  Y  F  M  K  M  D  L  L  K  Y  Q  K  I  C  L  L  S  G  M  I  L  V  G  T  R :   C  Q  T  L  Y  T  L  I  N  Q  L  E  L  V  S  V  I  L  L  M  K  V  T  F  D  T  M  R  L  V  *  A  M  T  F  M  I  S  Y  R :   P  S  S  M  L  I  L  S  M  *  I  M  I  S  T  L  L  E  N  H  M  L  D  I  I  F  L  H  L  L  L  E  F  I  K  E  T  *  R  K  K  E  F  T  *  T  S  R :   D  L  L  *  V  M  A  S  P  T  Q  K  S  S  I  K  L  T  P  T  I  L  W  I  *  N  *  S  I  K  P  T  T  I  I  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51816" stop="52162"/>
                    <exon start="52873" stop="53041"/>
                    <exon start="54029" stop="54148"/>
                    <exon start="54250" stop="54393"/>
                    <exon start="54485" stop="54595"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSSSSSLFPLLFVAIFLVLCSQIALSLSPNFFLQSHNDIISPKKLQLTMGEKLIRQLNLFPKHDINIVSSKDNNYENKLFEKKLDLSYLGDSGATVQDLGHHAGYFPLINTKSARMFYFFFESRSNKNDPVVIWLTGGPGCSSELALFYENGPFKISKNMSLVWNDFGWDKVSNLIYVDQPTGTGFSYTSDESDIRHNETGVSNDLYDFLQAFFNAHPEYVNNDFYITGESYAGHYIPAFASRVHQGNIKKEGIHINLKGFAIGNGLTNPEIQYKAYTDYSLDMKLINQTDYDYIN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53392" e_stop="53412"/>
            <exon e_start="53905" e_stop="54192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.905"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="53392" e_stop="53412" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53413" i_stop="53904" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="0.903">
            <gDNA_exon_boundary e_start="53905" e_stop="54192" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53392" stop="53412"/>
              <exon start="53905" stop="54192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTTTTTTTTTTATAT : TTTTTTAAAAAAAGAAAAAGGATTTTACTCATAAAATAGTTGGTATAAAGAATTTTTACACTATCAACGTTCAAAAGTTAAACTCGGAAAATAATATTTCCATTTACTTGTTGCGAATCGACAGGTGTCAAACCTTATATACGTTGATCAACCAACTGGAACTGGTTTCAGTTATACTTCTGATGAAAGTGACATTCGACACAATGAGACTGGTGTAAGCAATGACCTTTATGATTTCCTACAGGTTTGTTCCCTTCACCTCTTCTCGGTATTTCTCAGACTCCACTT</gDNA_template>
            <first_frame> F  F  F  F  F  L  Y  :  F  F  K  K  R  K  R  I  L  L  I  K  *  L  V  *  R  I  F  T  L  S  T  F  K  S  *  T  R  K  I  I  F  P  F  T  C  C  E  S  T  G  V  K  P  Y  I  R  *  S  T  N  W  N  W  F  Q  L  Y  F  *  *  K  *  H  S  T  Q  *  D  W  C  K  Q  *  P  L  *  F  P  T  G  L  F  P  S  P  L  L  G  I  S  Q  T  P  L </first_frame>
            <second_frame>  F  F  F  F  F  Y  I :   F  L  K  K  E  K  G  F  Y  S  *  N  S  W  Y  K  E  F  L  H  Y  Q  R  S  K  V  K  L  G  K  *  Y  F  H  L  L  V  A  N  R  Q  V  S  N  L  I  Y  V  D  Q  P  T  G  T  G  F  S  Y  T  S  D  E  S  D  I  R  H  N  E  T  G  V  S  N  D  L  Y  D  F  L  Q  V  C  S  L  H  L  F  S  V  F  L  R  L  H   </second_frame>
            <third_frame>   F  F  F  F  F  I   : F  F  *  K  K  K  K  D  F  T  H  K  I  V  G  I  K  N  F  Y  T  I  N  V  Q  K  L  N  S  E  N  N  I  S  I  Y  L  L  R  I  D  R  C  Q  T  L  Y  T  L  I  N  Q  L  E  L  V  S  V  I  L  L  M  K  V  T  F  D  T  M  R  L  V  *  A  M  T  F  M  I  S  Y  R  F  V  P  F  T  S  S  R  Y  F  S  D  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53913" stop="54122"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKKDFTHKIVGIKNFYTINVQKLNSENNISIYLLRIDRCQTLYTLINQLELVSVILLMKVTFDTMRLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53999" stop="54190"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFHLLVANRQVSNLIYVDQPTGTGFSYTSDESDIRHNETGVSNDLYDFLQVCSLHLFSVFLRLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="59566" PGL_stop="56973"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59566" e_stop="59195"/>
            <exon e_start="59076" e_stop="58956"/>
            <exon e_start="57155" e_stop="56973"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="0.957"/>
          <exon-intron don_prob="0.994" acc_prob="0.947" e_score="0.983"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="59566" e_stop="59195" e_length="372"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59194" i_stop="59077" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="59076" e_stop="58956" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.947">
            <gDNA_intron_boundary i_start="58955" i_stop="57156" i_length="1800"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="57155" e_stop="56973" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59566" stop="59195"/>
              <exon start="59076" stop="58956"/>
              <exon start="57155" stop="56973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAATCTTTCTCCTTCCACTGTACCATTTTCTTGAACAAACTGAATATTCTGAACAAGAAAAACTCCATCAATGAATCCAGAAAGCTCCAATAACAACAGCCAAACGAACCCTAGAAAAAGACCATTAGTAGAAGAACCTAGCAATGACAAACAACCAATAACACTAAATTCCATGGTGGTAGCCATTGATCACAACAATCTCTTTTACACAGTTTGTTCTATATGTGAAAAGACTCTACCTGACCCTTCTCCAAATACCCAAATCCCCAATTCTTCTTCTTCTTCTTCATCATCATCTTCAATACCCTTTTGCAAAAATTGCAACTTTAACTCTGCTTCTTCTGGTTCCAAACGCCTCTTTCGTGTTCTT : ATGTCGATAGCTACTGAGAAAAGAGTGGTTGTGGTGATAATGTTTGATAGGGCAGCTAGGGTTTTGTTTGGTTGTTCTGCTGATGAGTTCTTTGATTTTGCCAAGACTCACCCTTTTGCTG : CTGCAGCTGCCGGTAATGCTTTGGAGGGAGAGATGTTGAAGATCACCTTGTCCAAACCAAAGAATGGAAATGCACGACATCTACGAGTGGTATCAGTTTTTCCATTGCGGACAGGTTTTCAGCCTGTGATCAAGACCTTGAGGGAACTATATCGAGCAAGAGGCGGTTCATAGCTATTGCATT</gDNA_template>
            <first_frame> I  N  L  S  P  S  T  V  P  F  S  *  T  N  *  I  F  *  T  R  K  T  P  S  M  N  P  E  S  S  N  N  N  S  Q  T  N  P  R  K  R  P  L  V  E  E  P  S  N  D  K  Q  P  I  T  L  N  S  M  V  V  A  I  D  H  N  N  L  F  Y  T  V  C  S  I  C  E  K  T  L  P  D  P  S  P  N  T  Q  I  P  N  S  S  S  S  S  S  S  S  S  S  I  P  F  C  K  N  C  N  F  N  S  A  S  S  G  S  K  R  L  F  R  V  L  :  M  S  I  A  T  E  K  R  V  V  V  V  I  M  F  D  R  A  A  R  V  L  F  G  C  S  A  D  E  F  F  D  F  A  K  T  H  P  F  A   : A  A  A  A  G  N  A  L  E  G  E  M  L  K  I  T  L  S  K  P  K  N  G  N  A  R  H  L  R  V  V  S  V  F  P  L  R  T  G  F  Q  P  V  I  K  T  L  R  E  L  Y  R  A  R  G  G  S  *  L  L  H  </first_frame>
            <second_frame>  S  I  F  L  L  P  L  Y  H  F  L  E  Q  T  E  Y  S  E  Q  E  K  L  H  Q  *  I  Q  K  A  P  I  T  T  A  K  R  T  L  E  K  D  H  *  *  K  N  L  A  M  T  N  N  Q  *  H  *  I  P  W  W  *  P  L  I  T  T  I  S  F  T  Q  F  V  L  Y  V  K  R  L  Y  L  T  L  L  Q  I  P  K  S  P  I  L  L  L  L  L  H  H  H  L  Q  Y  P  F  A  K  I  A  T  L  T  L  L  L  L  V  P  N  A  S  F  V  F  L :   C  R  *  L  L  R  K  E  W  L  W  *  *  C  L  I  G  Q  L  G  F  C  L  V  V  L  L  M  S  S  L  I  L  P  R  L  T  L  L  L  :  L  Q  L  P  V  M  L  W  R  E  R  C  *  R  S  P  C  P  N  Q  R  M  E  M  H  D  I  Y  E  W  Y  Q  F  F  H  C  G  Q  V  F  S  L  *  S  R  P  *  G  N  Y  I  E  Q  E  A  V  H  S  Y  C  I </second_frame>
            <third_frame>   Q  S  F  S  F  H  C  T  I  F  L  N  K  L  N  I  L  N  K  K  N  S  I  N  E  S  R  K  L  Q  *  Q  Q  P  N  E  P  *  K  K  T  I  S  R  R  T  *  Q  *  Q  T  T  N  N  T  K  F  H  G  G  S  H  *  S  Q  Q  S  L  L  H  S  L  F  Y  M  *  K  D  S  T  *  P  F  S  K  Y  P  N  P  Q  F  F  F  F  F  F  I  I  I  F  N  T  L  L  Q  K  L  Q  L  *  L  C  F  F  W  F  Q  T  P  L  S  C  S   : Y  V  D  S  Y  *  E  K  S  G  C  G  D  N  V  *  *  G  S  *  G  F  V  W  L  F  C  *  *  V  L  *  F  C  Q  D  S  P  F  C  C :   C  S  C  R  *  C  F  G  G  R  D  V  E  D  H  L  V  Q  T  K  E  W  K  C  T  T  S  T  S  G  I  S  F  S  I  A  D  R  F  S  A  C  D  Q  D  L  E  G  T  I  S  S  K  R  R  F  I  A  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59512" stop="59195"/>
                    <exon start="59076" stop="58956"/>
                    <exon start="57155" stop="56983"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRKTPSMNPESSNNNSQTNPRKRPLVEEPSNDKQPITLNSMVVAIDHNNLFYTVCSICEKTLPDPSPNTQIPNSSSSSSSSSSIPFCKNCNFNSASSGSKRLFRVLMSIATEKRVVVVIMFDRAARVLFGCSADEFFDFAKTHPFAAAAAGNALEGEMLKITLSKPKNGNARHLRVVSVFPLRTGFQPVIKTLRELYRARGGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="73330" PGL_stop="74140"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73330" e_stop="74140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="73330" e_stop="74140" e_length="811"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73330" stop="74140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGTTTTTCAATTTTCCAACATTCTTAAAAGCGTTTCTATTTTTCTAATTTTCTAAAGTTTTTAAAAGCCTTTTCTTTATAAGGTGAGTTTGAATTTATTTTATTTTTAATTTATTTAATTAATTTTATACTTTTTTATATGATATTGTGGATATATTCAATCTACTGATACTTATATTAATGTTAATATTTCTTTTTATTTTTTGTGTATCGATATGCATCCGTCAAATGTATACGTACATCCTGGTCCAGTAGAGCATGATGTATTAAAAATTTAAGTTCATCATCGTTCCGAAGGAATTCGGAATGATAGCATAAAAGAAGAGAGGTCTTGCTTATATACGTGTCGTGGTGATATTGAATTTTGGCAACATATAAAATATCATCCATTACATTCTCGCATCCGTCAATATTTTGAAAATTGTGGATTAAAAGGAATTCTTGATGTAGGATGTGTGCCGTATGACTCCAGATTAATTTCTGCTTTAATTGAAAGGTGACGTCCAGAAACACACATTTTTCACATGCGAACTGGCGAGACTACCATAATTTTACAAGATGTTGAAATTTTATTCGGAATGGTAGTAGATGGTAGTCCTATAATTTTAAATGGAGCTGATTCTTTAGGGATTATAGGTAGACAAGAAATGATATTTGAATTAACAGGATGGTTACCCGATACTGGTTGTTTTTCTGGTGTTAGTAGATTGTTAACATATAAATTGATTGATTATATTGAAGGTTTAGATGGTATTAATGATCACTCAACAGAGCATGAAGTGCAACATTGATTTAGATTATATTCATTAT</gDNA_template>
            <first_frame> V  V  F  Q  F  S  N  I  L  K  S  V  S  I  F  L  I  F  *  S  F  *  K  P  F  L  Y  K  V  S  L  N  L  F  Y  F  *  F  I  *  L  I  L  Y  F  F  I  *  Y  C  G  Y  I  Q  S  T  D  T  Y  I  N  V  N  I  S  F  Y  F  L  C  I  D  M  H  P  S  N  V  Y  V  H  P  G  P  V  E  H  D  V  L  K  I  *  V  H  H  R  S  E  G  I  R  N  D  S  I  K  E  E  R  S  C  L  Y  T  C  R  G  D  I  E  F  W  Q  H  I  K  Y  H  P  L  H  S  R  I  R  Q  Y  F  E  N  C  G  L  K  G  I  L  D  V  G  C  V  P  Y  D  S  R  L  I  S  A  L  I  E  R  *  R  P  E  T  H  I  F  H  M  R  T  G  E  T  T  I  I  L  Q  D  V  E  I  L  F  G  M  V  V  D  G  S  P  I  I  L  N  G  A  D  S  L  G  I  I  G  R  Q  E  M  I  F  E  L  T  G  W  L  P  D  T  G  C  F  S  G  V  S  R  L  L  T  Y  K  L  I  D  Y  I  E  G  L  D  G  I  N  D  H  S  T  E  H  E  V  Q  H  *  F  R  L  Y  S  L  </first_frame>
            <second_frame>  *  F  F  N  F  P  T  F  L  K  A  F  L  F  F  *  F  S  K  V  F  K  S  L  F  F  I  R  *  V  *  I  Y  F  I  F  N  L  F  N  *  F  Y  T  F  L  Y  D  I  V  D  I  F  N  L  L  I  L  I  L  M  L  I  F  L  F  I  F  C  V  S  I  C  I  R  Q  M  Y  T  Y  I  L  V  Q  *  S  M  M  Y  *  K  F  K  F  I  I  V  P  K  E  F  G  M  I  A  *  K  K  R  G  L  A  Y  I  R  V  V  V  I  L  N  F  G  N  I  *  N  I  I  H  Y  I  L  A  S  V  N  I  L  K  I  V  D  *  K  E  F  L  M  *  D  V  C  R  M  T  P  D  *  F  L  L  *  L  K  G  D  V  Q  K  H  T  F  F  T  C  E  L  A  R  L  P  *  F  Y  K  M  L  K  F  Y  S  E  W  *  *  M  V  V  L  *  F  *  M  E  L  I  L  *  G  L  *  V  D  K  K  *  Y  L  N  *  Q  D  G  Y  P  I  L  V  V  F  L  V  L  V  D  C  *  H  I  N  *  L  I  I  L  K  V  *  M  V  L  M  I  T  Q  Q  S  M  K  C  N  I  D  L  D  Y  I  H  Y </second_frame>
            <third_frame>   S  F  S  I  F  Q  H  S  *  K  R  F  Y  F  S  N  F  L  K  F  L  K  A  F  S  L  *  G  E  F  E  F  I  L  F  L  I  Y  L  I  N  F  I  L  F  Y  M  I  L  W  I  Y  S  I  Y  *  Y  L  Y  *  C  *  Y  F  F  L  F  F  V  Y  R  Y  A  S  V  K  C  I  R  T  S  W  S  S  R  A  *  C  I  K  N  L  S  S  S  S  F  R  R  N  S  E  *  *  H  K  R  R  E  V  L  L  I  Y  V  S  W  *  Y  *  I  L  A  T  Y  K  I  S  S  I  T  F  S  H  P  S  I  F  *  K  L  W  I  K  R  N  S  *  C  R  M  C  A  V  *  L  Q  I  N  F  C  F  N  *  K  V  T  S  R  N  T  H  F  S  H  A  N  W  R  D  Y  H  N  F  T  R  C  *  N  F  I  R  N  G  S  R  W  *  S  Y  N  F  K  W  S  *  F  F  R  D  Y  R  *  T  R  N  D  I  *  I  N  R  M  V  T  R  Y  W  L  F  F  W  C  *  *  I  V  N  I  *  I  D  *  L  Y  *  R  F  R  W  Y  *  *  S  L  N  R  A  *  S  A  T  L  I  *  I  I  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73831" stop="74121"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPETHIFHMRTGETTIILQDVEILFGMVVDGSPIILNGADSLGIIGRQEMIFELTGWLPDTGCFSGVSRLLTYKLIDYIEGLDGINDHSTEHEVQH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73609" stop="73830"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHHRSEGIRNDSIKEERSCLYTCRGDIEFWQHIKYHPLHSRIRQYFENCGLKGILDVGCVPYDSRLISALIER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="84228" PGL_stop="84519"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84228" e_stop="84519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="84228" e_stop="84519" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84228" stop="84519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCATTCTTTCTTCCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCGGCAGGACAGGGTGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  H  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  P  A  G  Q  G  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  S  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  H  R  Q  D  R  V  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  P  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  S  T  G  R  T  G  C  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84277" stop="84519"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSSVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQHRQDRVRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="84593" PGL_stop="85146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84593" e_stop="85146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="84593" e_stop="85146" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84593" stop="85146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGTCCATCTGATACTAGGGCAGTAACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAGCCTACCCCAGAGATGATAAATCAGGTGCTCGCTTATCTTAGTGGGTTGTCCGATCAGGGTCAAACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGCTCCGGAGGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTCGAAATTGAAACCTCCAGTCATCAAGGGTGCGGAATCTGAGGATGCTTATGATTTTCTGGTTGACTATCATGAGCTACTACATAATATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  S  I  *  Y  *  G  S  N  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  A  Y  P  R  D  D  K  S  G  A  R  L  S  *  W  V  V  R  S  G  S  N  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  C  G  S  P  H  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  H  Q  G  C  G  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  T  *  Y  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  S  K  L  K  P  P  V  I  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  Y  H  E  L  L  H  N  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  V  H  L  I  L  G  Q  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  M  N  K  C  R  M  R  D  C  H  P  S  L  P  Q  R  *  *  I  R  C  S  L  I  L  V  G  C  P  I  R  V  K  H  L  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  R  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  M  I  F  W  L  T  I  M  S  Y  Y  I  I  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84594" stop="85145"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGENEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQAPEVQHAATVAPRMDASLDIGTFPRLTTGPIMTNDQHELFSKFSKLKPPVIKGAESEDAYDFLVDYHELLHNMGIVERFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="85220" PGL_stop="86660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85220" e_stop="85392"/>
            <exon e_start="86133" e_stop="86660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.896"/>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="85220" e_stop="85392" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85393" i_stop="86132" i_length="740"/>
          </intron>
          <exon e_serial="2" e_score="0.905">
            <gDNA_exon_boundary e_start="86133" e_stop="86660" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85220" stop="85392"/>
              <exon start="86133" stop="86660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCAGTTACTGCATATGAGGCTAAGTTTTGTGCATTATCCCGGTATGCCACCCAACTGTGTTTCAGTCCACAAGAGCGGATTCGCCGTTTTGTGAAAGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACAGCGAAATCTTTCCAAG : AAATGGTTGACTTTGATGTAATTTTGGGTATGACTTGGCTTTCACTGAATTTTGCAATCTTGGATGGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTTTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTCCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTGGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGTAGATCTTCCTGGTATGCCACCAGATAGGGATATCGATTCCTGTATTGATCTTGAACCGGAAACTCGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCACGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAGGGCTTCATTAGACCAAGTGCATCGCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  S  Y  C  I  *  G  *  V  L  C  I  I  P  V  C  H  P  T  V  F  Q  S  T  R  A  D  S  P  F  C  E  R  V  E  I  R  V  A  D  F  S  L  T  G  S  G  Y  S  E  I  F  P  R :   N  G  *  L  *  C  N  F  G  Y  D  L  A  F  T  E  F  C  N  L  G  W  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  L  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  P  S  C  *  E  N  G  *  *  R  V  F  G  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  R  F  L  Y  *  S  *  T  G  N  S  P  H  F  Y  T  P  L  *  N  G  S  H  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  G  L  H  *  T  K  C  I  A  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  T  A  Y  E  A  K  F  C  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  L  G  M  T  W  L  S  L  N  F  A  I  L  D  G  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  V  D  L  P  G  M  P  P  D  R  D  I  D  S  C  I  D  L  E  P  E  T  R  P  I  F  I  P  P  Y  R  M  A  P  T  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  Q  L  L  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  C  V  S  V  H  K  S  G  F  A  V  L  *  K  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  R  L  Q  R  N  L  S  K  :  K  W  L  T  L  M  *  F  W  V  *  L  G  F  H  *  I  L  Q  S  W  M  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  F  G  R  V  T  T  L  P  I  R  C  V  S  S  P  S  F  V  L  R  K  W  L  V  K  G  V  W  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  S  F  W  M  C  S  L  *  I  F  L  V  C  H  Q  I  G  I  S  I  P  V  L  I  L  N  R  K  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  R  A  S  L  D  Q  V  H  R  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85221" stop="85392"/>
                    <exon start="86133" stop="86659"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVTAYEAKFCALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVILGMTWLSLNFAILDGNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPVDLPGMPPDRDIDSCIDLEPETRPIFIPPYRMAPTELRELKAQLQELLSKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="87232" PGL_stop="85908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87232" e_stop="85908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="87232" e_stop="85908" e_length="1325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87232" stop="86520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86712" stop="86054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86643" stop="85908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86240" stop="85910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCCGTAGTAGCTAGCTAACCCAACAAAGCTTCTTATTTCTAACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCAGGTTCCTCCTTGCTCTTTGAGTAAACCAGTATATCATCAATGAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAAAGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCACATACCTCGTTCGAAAAGCAGTCTTTGGCACATACGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATGTTAGAGAAGACACAAGCACCTTGTAACTGGTCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGCGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGTGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGAGTTTCCGGTTCAAGATCAATACAGGAATCGATATCCCTATCTGGTGGCATACCAGGAAGATCTACAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCCAAACACCCTTTACTAACCATTTTCTTAGCACGAAGGAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACCATCCAAGATTGCAAAATTCAGTGAAAGCCAAGTCATACCCAAAATTACATCAAAGTCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAATTCACCAAACAAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGTAATTCACAAGGTAAATTTAGACCATTAGCAAATGAAGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATACAATCACAAACCGAAA</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  S  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  R  F  L  L  A  L  *  V  N  Q  Y  I  I  N  E  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  H  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  V  R  E  D  T  S  T  L  *  L  V  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  L  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  K  N  G  A  S  F  R  F  K  I  N  T  G  I  D  I  P  I  W  W  H  T  R  K  I  Y  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  Q  T  P  F  T  N  H  F  L  S  T  K  E  G  D  D  T  H  R  I  G  S  V  V  T  L  P  N  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  I  Q  *  K  P  S  H  T  Q  N  Y  I  K  V  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  I  H  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  Y  V  K  *  F  T  R  *  I  *  T  I  S  K  *  R  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  T  I  T  N  R   </first_frame>
            <second_frame>  N  P  L  T  N  R  P  *  *  L  A  N  P  T  K  L  L  I  S  N  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  G  S  S  L  L  F  E  *  T  S  I  S  S  M  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  K  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  T  Y  L  V  R  K  A  V  F  G  T  Y  V  A  R  I  F  N  *  *  *  P  D  L  K  S  M  L  E  K  T  Q  A  P  C  N  W  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  V  G  A  I  L  *  G  G  I  K  M  G  R  V  S  G  S  R  S  I  Q  E  S  I  S  L  S  G  G  I  P  G  R  S  T  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  Q  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  P  S  K  I  A  K  F  S  E  S  Q  V  I  P  K  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  G  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  I  Q  S  Q  T  E  </second_frame>
            <third_frame>   I  P  *  Q  I  G  R  S  S  *  L  T  Q  Q  S  F  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  Q  V  P  P  C  S  L  S  K  P  V  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  K  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  T  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  C  *  R  R  H  K  H  L  V  T  G  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  A  M  H  L  V  *  *  S  P  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  W  E  P  F  Y  K  G  V  *  K  W  G  E  F  P  V  Q  D  Q  Y  R  N  R  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  P  N  T  L  Y  *  P  F  S  *  H  E  G  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  K  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  H  P  R  L  Q  N  S  V  K  A  K  S  Y  P  K  L  H  Q  S  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  N  S  P  N  K  T  Y  I  L  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  V  I  H  K  V  N  L  D  H  *  Q  M  K  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  Y  N  H  K  P  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86527" stop="86243"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRGSHSIRGYKNGASFRFKINTGIDIPIWWHTRKIYREHIQKLTDHRNRLNRRYLGSVILEMCQESQTPFTNHFLSTKEGDDTHRIGSVVTLPN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86505" stop="86260"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIKMGRVSGSRSIQESISLSGGIPGRSTGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86968" stop="86729"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VNQYIINEYDHKEIQIWLKNPVHQAHESSRGIRKTKRHHYKFVMHIPRSKSSLWHIRCPYFQLMITGSQVNVREDTSTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="88713" PGL_stop="88537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88713" e_stop="88537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="88713" e_stop="88537" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88713" stop="88537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGTGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAGCACTTGAATCGTTCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  *  E  N  S  A  K  C  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  S  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  C  C  R  R  T  L  L  S  V  R  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  P  P  A  L  E  S  F  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  V  V  G  E  L  C  *  V  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  S  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="96789" PGL_stop="94270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96789" e_stop="95007"/>
            <exon e_start="94950" e_stop="94898"/>
            <exon e_start="94800" e_stop="94762"/>
            <exon e_start="94398" e_stop="94270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-intron don_prob="0.000" acc_prob="0.328" e_score="0.736"/>
          <exon-intron don_prob="0.900" acc_prob="0.998" e_score="0.538"/>
          <exon-only e_score="0.535"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="96789" e_stop="95007" e_length="1783"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95006" i_stop="94951" i_length="56"/>
          </intron>
          <exon e_serial="2" e_score="0.736">
            <gDNA_exon_boundary e_start="94950" e_stop="94898" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.328">
            <gDNA_intron_boundary i_start="94897" i_stop="94801" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.538">
            <gDNA_exon_boundary e_start="94800" e_stop="94762" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94761" i_stop="94399" i_length="363"/>
          </intron>
          <exon e_serial="4" e_score="0.535">
            <gDNA_exon_boundary e_start="94398" e_stop="94270" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96789" stop="95007"/>
              <exon start="94950" stop="94898"/>
              <exon start="94800" stop="94762"/>
              <exon start="94398" stop="94270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATTTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATAGAAGAATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAGGGTATCAAGCCAGTGGGGTACAAATGGATTTTTGTACGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGACATTGATTATATGGAGACATATTCTCTAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATCTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGATGTTGTCACAGCCTATCTATATGGTTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTGCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAGTCTCTGTATGGATTGAAAAAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTATAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTCGGGGTCTGAATTTGTAATAATAGTTGTGTATGTTGATGATTTGAACATCATTGGCACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTTTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATACATTAAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAACTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATGTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAATAGGCTATTTGTTTACATGTGGAGACACAACAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGAAAGTCGAGAGTGCGTCTGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGTTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAATAAAATGGTGAGATAGAATTTCAACAAATTCGTTCAAGTGATAATCTTAATGATTTATTCACTAAGGCATTGCCAACATCAACGTTTGAGAAATTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTGAGTTTTTCCTGGTAAGGTTTTTAACGAGGCAACATTCAAAGCGTATTATGAGATATGTGTACTCTTTTTCCTTCATTAG : ACATCCAAGGGGGAGTGTTGTAAATCCATTGTATATGTGGATGATCCATTAGA : GTGACCTTTGACTATGATATCTCAACACTATAAATAGAG : AAGAGTGAATGAAGCACGACCAGGGGCAAAAATGTAATTTAGTCTAACAAAAATCTATTAAGAAAAGATAATAAATATTTCTAGAAATCTCTTTCTTTATATAAAGTGAATAATGATCAAGAATAAAAA</gDNA_template>
            <first_frame> K  *  C  N  K  M  K  I  L  S  Q  N  L  F  T  N  V  D  R  E  M  I  G  Q  N  R  R  M  Q  F  K  L  N  W  L  H  *  K  N  V  K  F  L  D  R  *  S  E  H  L  R  V  S  S  Q  W  G  T  N  G  F  L  Y  E  K  E  M  R  K  V  K  S  *  D  I  R  P  D  S  L  L  K  V  F  L  K  D  L  T  L  I  I  W  R  H  I  L  *  W  *  M  Q  S  P  S  D  I  S  *  I  W  Q  F  M  K  N  L  K  C  V  *  W  M  L  S  Q  P  I  Y  M  V  H  W  T  T  T  F  S  *  K  F  L  K  H  S  K  C  L  K  H  T  K  I  Q  E  K  L  V  Q  *  S  F  R  S  L  C  M  D  *  K  N  Q  E  G  C  G  T  I  V  *  V  N  I  C  *  R  K  G  I  K  M  T  R  F  V  P  A  F  S  L  N  G  R  G  L  N  L  *  *  *  L  C  M  L  M  I  *  T  S  L  A  L  V  K  S  F  *  K  L  L  S  V  *  K  K  N  L  K  *  K  I  S  A  R  Q  N  F  V  L  V  Y  R  L  R  I  F  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  S  V  F  T  W  I  T  H  I  H  *  V  L  Q  W  W  *  D  R  L  T  S  I  Q  I  H  F  D  L  K  R  M  M  K  N  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  V  L  Q  *  V  Y  W  Q  D  S  V  P  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  M  F  E  G  P  W  T  W  V  Y  S  I  P  M  N  P  N  Q  N  *  L  V  T  Q  M  Q  G  I  Y  Q  I  R  I  K  L  D  H  K  *  A  I  C  L  H  V  E  T  Q  Q  Y  L  G  D  Q  *  S  K  H  W  *  P  L  L  Q  I  M  Q  K  *  *  P  S  M  K  K  V  E  S  A  S  V  E  I  N  D  P  S  Y  S  G  N  V  W  F  F  F  E  K  E  Y  T  N  H  N  V  R  R  *  C  C  M  Y  S  S  I  E  R  R  I  H  Q  R  R  P  D  K  A  Y  L  T  K  V  L  F  H  A  *  S  S  I  K  W  *  D  R  I  S  T  N  S  F  K  *  *  S  *  *  F  I  H  *  G  I  A  N  I  N  V  *  E  I  E  I  Q  D  W  N  A  P  S  P  R  Y  Q  V  K  F  S  S  G  G  A  K  Y  A  L  Y  S  F  P  *  L  W  F  C  P  K  L  S  F  S  W  *  G  F  *  R  G  N  I  Q  S  V  L  *  D  M  C  T  L  F  P  S  L   : D  I  Q  G  G  V  L  *  I  H  C  I  C  G  *  S  I  R  :  V  T  F  D  Y  D  I  S  T  L  *  I  E  :  K  S  E  *  S  T  T  R  G  K  N  V  I  *  S  N  K  N  L  L  R  K  D  N  K  Y  F  *  K  S  L  S  L  Y  K  V  N  N  D  Q  E  *  K </first_frame>
            <second_frame>  N  N  A  T  R  *  R  F  *  A  K  I  C  S  R  M  *  T  E  K  *  L  A  K  I  E  E  C  N  S  S  *  I  G  F  T  R  K  T  *  S  F  W  T  D  N  P  N  T  *  G  Y  Q  A  S  G  V  Q  M  D  F  C  T  K  K  K  *  E  R  *  S  H  E  I  *  G  P  T  R  C  S  R  F  F  S  K  T  *  H  *  L  Y  G  D  I  F  S  S  G  R  C  N  H  L  Q  I  S  H  K  S  G  S  S  *  K  T  *  N  A  S  N  G  C  C  H  S  L  S  I  W  F  I  G  P  Q  H  F  H  E  N  S  *  S  I  Q  S  A  *  S  I  Q  R  F  K  R  N  L  F  N  K  A  S  E  V  S  V  W  I  E  K  I  R  K  D  V  V  Q  S  S  E  *  I  F  V  K  E  R  V  *  K  *  P  D  L  S  L  H  F  H  *  T  V  G  V  *  I  C  N  N  S  C  V  C  *  *  F  E  H  H  W  H  S  *  R  A  F  R  S  C  *  V  S  E  K  R  I  *  N  E  R  S  R  Q  D  K  I  L  S  W  S  T  D  *  E  F  F  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  A  F  L  H  G  *  L  T  Y  I  K  Y  S  N  G  G  K  I  A  *  H  Q  Y  R  S  I  S  T  S  R  E  *  *  R  T  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  G  K  I  Q  F  L  P  N  K  K  T  L  E  W  C  *  T  H  T  S  I  C  S  R  D  H  G  H  G  F  I  L  F  Q  *  I  Q  I  R  T  D  W  L  R  R  C  R  V  F  I  R  S  A  *  S  S  I  T  N  R  L  F  V  Y  M  W  R  H  N  N  I  L  A  I  N  E  A  N  I  G  S  H  F  F  K  S  C  R  N  N  S  H  P  *  R  K  S  R  V  R  L  L  R  S  M  T  H  H  I  Q  E  M  C  G  F  S  L  K  K  N  I  P  T  T  M  Y  E  D  N  A  A  C  I  V  Q  L  K  G  G  Y  I  K  G  D  R  T  K  H  I  S  P  K  F  F  F  T  H  D  L  Q  *  N  G  E  I  E  F  Q  Q  I  R  S  S  D  N  L  N  D  L  F  T  K  A  L  P  T  S  T  F  E  K  L  R  Y  K  I  G  M  R  R  L  R  D  I  K  *  S  F  H  Q  G  E  R  N  T  R  C  T  L  F  L  N  Y  G  F  V  P  S  *  V  F  P  G  K  V  F  N  E  A  T  F  K  A  Y  Y  E  I  C  V  L  F  F  L  H  *  :  T  S  K  G  E  C  C  K  S  I  V  Y  V  D  D  P  L  E :   *  P  L  T  M  I  S  Q  H  Y  K  *  R :   R  V  N  E  A  R  P  G  A  K  M  *  F  S  L  T  K  I  Y  *  E  K  I  I  N  I  S  R  N  L  F  L  Y  I  K  *  I  M  I  K  N  K   </second_frame>
            <third_frame>   I  M  Q  Q  D  E  D  F  E  P  K  F  V  H  E  C  R  Q  R  N  D  W  P  K  *  K  N  A  I  Q  A  E  L  A  S  L  E  K  R  E  V  F  G  P  I  I  R  T  P  E  G  I  K  P  V  G  Y  K  W  I  F  V  R  K  R  N  E  K  G  E  V  M  R  Y  K  A  R  L  V  A  Q  G  F  S  Q  R  P  D  I  D  Y  M  E  T  Y  S  L  V  V  D  A  I  T  F  R  Y  L  I  N  L  A  V  H  E  K  L  E  M  R  L  M  D  V  V  T  A  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  E  A  F  K  V  P  E  A  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  G  L  K  K  S  G  R  M  W  Y  N  R  L  S  E  Y  L  L  K  K  G  Y  K  N  D  P  I  C  P  C  I  F  I  K  R  S  G  S  E  F  V  I  I  V  V  Y  V  D  D  L  N  I  I  G  T  R  K  E  L  L  E  A  V  E  C  L  K  K  E  F  E  M  K  D  L  G  K  T  K  F  C  L  G  L  Q  I  E  N  F  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  K  R  F  Y  M  D  N  S  H  T  L  S  T  P  M  V  V  R  S  L  D  I  N  T  D  P  F  R  P  Q  E  N  D  E  E  L  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  A  N  N  T  R  P  D  I  C  F  A  V  S  L  L  A  R  F  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  L  R  Y  V  R  G  T  M  D  M  G  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  G  Y  L  S  D  P  H  K  A  R  S  Q  I  G  Y  L  F  T  C  G  D  T  T  I  S  W  R  S  M  K  Q  T  L  V  A  T  S  S  N  H  A  E  I  I  A  I  H  E  E  S  R  E  C  V  C  *  D  Q  *  P  I  I  F  R  K  C  V  V  F  L  *  K  R  I  Y  Q  P  Q  C  T  K  I  M  L  H  V  *  F  N  *  K  E  D  T  S  K  E  T  G  Q  S  I  S  H  Q  S  S  F  S  R  M  I  F  N  K  M  V  R  *  N  F  N  K  F  V  Q  V  I  I  L  M  I  Y  S  L  R  H  C  Q  H  Q  R  L  R  N  *  D  T  R  L  E  C  A  V  S  E  I  S  S  K  V  F  I  R  G  S  E  I  R  V  V  L  F  S  L  T  M  V  L  S  Q  V  E  F  F  L  V  R  F  L  T  R  Q  H  S  K  R  I  M  R  Y  V  Y  S  F  S  F  I  R :   H  P  R  G  S  V  V  N  P  L  Y  M  W  M  I  H  *   : S  D  L  *  L  *  Y  L  N  T  I  N  R   : E  E  *  M  K  H  D  Q  G  Q  K  C  N  L  V  *  Q  K  S  I  K  K  R  *  *  I  F  L  E  I  S  F  F  I  *  S  E  *  *  S  R  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96712" stop="95465"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNAIQAELASLEKREVFGPIIRTPEGIKPVGYKWIFVRKRNEKGEVMRYKARLVAQGFSQRPDIDYMETYSLVVDAITFRYLINLAVHEKLEMRLMDVVTAYLYGSLDHNIFMKIPEAFKVPEAYKDSRETCSIKLQKSLYGLKKSGRMWYNRLSEYLLKKGYKNDPICPCIFIKRSGSEFVIIVVYVDDLNIIGTRKELLEAVECLKKEFEMKDLGKTKFCLGLQIENFSNGILVHQSTYTEKILKRFYMDNSHTLSTPMVVRSLDINTDPFRPQENDEELLGDETPYLSAIGALMYLANNTRPDICFAVSLLARFSSSPTKRHWNGVKHILRYVRGTMDMGLFYSNESKSELIGYADAGYLSDPHKARSQIGYLFTCGDTTISWRSMKQTLVATSSNHAEIIAIHEESRECVC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95194" stop="95007"/>
                    <exon start="94950" stop="94899"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTRLECAVSEISSKVFIRGSEIRVVLFSLTMVLSQVEFFLVRFLTRQHSKRIMRYVYSFSFIRHPRGSVVNPLYMWMIH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95489" stop="95289"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKSRVRLLRSMTHHIQEMCGFSLKKNIPTTMYEDNAACIVQLKGGYIKGDRTKHISPKFFFTHDLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="98532" PGL_stop="98165"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98532" e_stop="98165"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="98532" e_stop="98165" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98532" stop="98165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCACAGTAAACAAAAGGTTTACTAATTTTAATGTTTTATCATTTGGCATG</gDNA_template>
            <first_frame> L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  R  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  *  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  C  T  I  Q  V  *  V  Q  L  N  H  M  P  Q  *  T  K  G  L  L  I  L  M  F  Y  H  L  A   </first_frame>
            <second_frame>  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  G  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  R  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  H  S  K  Q  K  V  Y  *  F  *  C  F  I  I  W  H  </second_frame>
            <third_frame>   M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  T  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  L  P  A  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  T  V  N  K  R  F  T  N  F  N  V  L  S  F  G  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98530" stop="98165"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVETANEGKVEYLYITTINVEKKIVHEKLPAFSSGLYYTSISTVESHATVNKRFTNFNVLSFGM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="101255" PGL_stop="100798"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101255" e_stop="100798"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="101255" e_stop="100798" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101255" stop="100798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCAAATACAAAATTAAATTACAATACACAGAAAAAAATATTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAATAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACTTTGAACTTTGATAGAAGAATCATATATACCCCTAAATAATTTTTTATAAATATTAGAAGTAATATATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATACGAGCCACTTTAATAACGAGGGGTATATCAGCTCTAAATGACAAAGTTGAGGGGTATATCAAACCCTTTTCCCTTTTATTTAAAATGAAATAA</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  Q  I  Q  N  *  I  T  I  H  R  K  K  Y  F  N  F  F  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  *  F  F  I  N  I  R  S  N  I  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  *  *  R  G  V  Y  Q  L  *  M  T  K  L  R  G  I  S  N  P  F  P  F  Y  L  K  *  N   </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  K  Y  K  I  K  L  Q  Y  T  E  K  N  I  L  I  F  F  L  *  T  K  E  *  K  K  K  I  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  L  *  T  L  I  E  E  S  Y  I  P  L  N  N  F  L  *  I  L  E  V  I  Y  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  V  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  T  S  H  F  N  N  E  G  Y  I  S  S  K  *  Q  S  *  G  V  Y  Q  T  L  F  P  F  I  *  N  E  I  </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  N  T  Q  K  K  I  F  *  F  F  F  F  K  L  R  N  E  R  K  K  *  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  F  E  L  *  *  K  N  H  I  Y  P  *  I  I  F  Y  K  Y  *  K  *  Y  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  S  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  R  A  T  L  I  T  R  G  I  S  A  L  N  D  K  V  E  G  Y  I  K  P  F  S  L  L  F  K  M  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="102342" PGL_stop="102678"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102342" e_stop="102678"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="102342" e_stop="102678" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102342" stop="102678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCGAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCCCAATACCATACTCATTTGGGAATCATGTTCGTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTAATTCTCTTGTGTCGGTACGTGACACTCCGATCCCTCATATTCATTATTCCTCTTGTGTCTGTACGTGACACTCCGATCCCCTAAATCTACGTGTCAGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  E  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  S  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  P  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  N  S  L  V  S  V  R  D  T  P  I  P  H  I  H  Y  S  S  C  V  C  T  *  H  S  D  P  L  N  L  R  V  S  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  A  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  P  I  P  Y  S  F  G  N  H  V  R  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  I  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  I  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  R  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  H  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  V  R  L  S  I  L  T  S  F  K  I  H  Y  L  *  F  S  C  V  G  T  *  H  S  D  P  S  Y  S  L  F  L  L  C  L  Y  V  T  L  R  S  P  K  S  T  C  Q  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="103338" PGL_stop="102675"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103338" e_stop="103022"/>
            <exon e_start="102971" e_stop="102675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.521" e_score="0.912"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="103338" e_stop="103022" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.521">
            <gDNA_intron_boundary i_start="103021" i_stop="102972" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="102971" e_stop="102675" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103338" stop="103022"/>
              <exon start="102971" stop="102675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAAGAAAATAGAAAGAACAAGAGAGAGAGGGAGAATCGAACGAGAAGGGAGAAACAAAGCTTGGAGAAAAATTTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTGTTTCATGCTTTCATGAGTAAACTCTTAATAGTGATTGATATGTATTGGTAGTATTGTAAACCCTACTATATGCTTAATGGTATGTTGCATGAATATGATTATGTGATTGTGATAAAATAAGCATGATGAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGCCTTGGTATAG : AAGAAGGCTTGATGAATTAAAGTAATGGGATTGATGATGCCTTGGTATAGAGAAGGCTTGATGGTTTACAGAATGATATTAGTGGATCGGGTGTCACGAACCGGCACGTAGAATTAAGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGAGTGTCATGAACCGACTCGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGAT</gDNA_template>
            <first_frame> N  K  E  N  R  K  N  K  R  E  R  E  N  R  T  R  R  E  K  Q  S  L  E  K  N  L  L  A  *  S  L  I  F  G  G  G  R  L  W  L  F  H  A  F  M  S  K  L  L  I  V  I  D  M  Y  W  *  Y  C  K  P  Y  Y  M  L  N  G  M  L  H  E  Y  D  Y  V  I  V  I  K  *  A  *  *  K  Y  *  I  P  N  L  E  K  K  L  *  Y  T  L  L  M  M  M  P  W  Y  R :   R  R  L  D  E  L  K  *  W  D  *  *  C  L  G  I  E  K  A  *  W  F  T  E  *  Y  *  W  I  G  C  H  E  P  A  R  R  I  K  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  S  V  M  N  R  L  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G   </first_frame>
            <second_frame>  I  K  K  I  E  R  T  R  E  R  G  R  I  E  R  E  G  R  N  K  A  W  R  K  I  C  L  L  D  H  *  S  S  V  E  V  G  Y  G  C  F  M  L  S  *  V  N  S  *  *  *  L  I  C  I  G  S  I  V  N  P  T  I  C  L  M  V  C  C  M  N  M  I  M  *  L  *  *  N  K  H  D  E  N  I  E  S  Q  I  L  K  R  N  F  N  I  H  Y  *  *  *  C  L  G  I   : E  E  G  L  M  N  *  S  N  G  I  D  D  A  L  V  *  R  R  L  D  G  L  Q  N  D  I  S  G  S  G  V  T  N  R  H  V  E  L  R  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  *  T  D  S  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  </second_frame>
            <third_frame>   *  R  K  *  K  E  Q  E  R  E  G  E  S  N  E  K  G  E  T  K  L  G  E  K  F  A  C  L  I  T  N  L  R  W  R  *  V  M  V  V  S  C  F  H  E  *  T  L  N  S  D  *  Y  V  L  V  V  L  *  T  L  L  Y  A  *  W  Y  V  A  *  I  *  L  C  D  C  D  K  I  S  M  M  K  I  L  N  P  K  S  *  K  E  T  L  I  Y  I  I  N  D  D  A  L  V  *  :  K  K  A  *  *  I  K  V  M  G  L  M  M  P  W  Y  R  E  G  L  M  V  Y  R  M  I  L  V  D  R  V  S  R  T  G  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  E  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="104509" PGL_stop="104685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104509" e_stop="104685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="104509" e_stop="104685" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104509" stop="104685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0249E07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="105989" PGL_stop="108699"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105989" e_stop="108699"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="105989" e_stop="108699" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105989" stop="106701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106509" stop="107167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106578" stop="107335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107188" stop="107746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107192" stop="108628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108267" stop="108699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACGAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAATCATCAATGCGGGGAAGAGGGTACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTTTAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATATAGAAGTCAATATCCCTATCCGATGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGACGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCAGCGGAGTAGAGACACGGATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCATTGCCCCTACCATGCTGTGATGTAGTGGCTCCAGTTTGCCCATTACCTCTGTCGTTTTGGTGACCACTATTACCTCGACCACCACGCCCTCCAGAAAAACGGTCTCTACCATGACCACCTCTACCTCTAGTTATTGGGGGTCTGTAACTTGGTCTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTTTGGAGTCGATCATATGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGACTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTAGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCAAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGATGGTGCCTCTATTGGTTGACACTCGACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCTGGAGCCTGAGGTGCTGGTGCAGAGAACACTAGGGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTCTGCACTCGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCTCTGCCCTAGTATCAGATGGGCTAGGTGCTTGTCCTCTCCCTCTAGAGGACGTCCTCCCACGACCTCTTCCACGGCCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  E  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  I  I  N  A  G  K  R  V  L  V  L  N  S  Y  F  I  Q  L  S  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  L  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  I  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  H  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  H  V  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  Q  R  S  R  D  T  D  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  K  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  I  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  V  V  L  V  T  T  I  T  S  T  T  T  P  S  R  K  T  V  S  T  M  T  T  S  T  S  S  Y  W  G  S  V  T  W  S  G  T  I  S  P  N  M  S  N  L  P  T  S  I  T  F  F  G  V  D  H  M  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  T  F  *  C  R  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  S  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  S  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  W  S  L  R  C  W  C  R  E  H  *  G  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  H  F  L  I  L  H  S  F  S  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  L  C  P  S  I  R  W  A  R  C  L  S  S  P  S  R  G  R  P  P  T  T  S  S  T  A  P  C  R  C  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  L  I  V  T  L  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  *  K  S  I  S  L  S  D  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  R  R  K  E  T  M  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  S  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  L  P  L  S  F  W  *  P  L  L  P  R  P  P  R  P  P  E  K  R  S  L  P  *  P  P  L  P  L  V  I  G  G  L  *  L  G  L  G  Q  F  L  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  I  I  C  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  R  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  Q  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  D  G  A  S  I  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  A  G  A  E  N  T  R  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  I  S  S  F  C  T  R  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  S  A  L  V  S  D  G  L  G  A  C  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  W  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  R  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  N  H  Q  C  G  E  E  G  T  C  S  *  *  L  L  Y  S  V  V  C  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  F  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  M  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  E  E  R  R  R  C  G  P  D  W  K  C  S  H  P  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  S  R  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  A  E  *  R  H  G  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  Q  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  H  C  P  Y  H  A  V  M  *  W  L  Q  F  A  H  Y  L  C  R  F  G  D  H  Y  Y  L  D  H  H  A  L  Q  K  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  C  N  L  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  R  S  Y  A  P  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  L  V  L  *  C  K  N  H  *  T  H  L  P  F  E  D  F  L  M  S  M  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  *  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  K  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  M  V  P  L  L  V  D  T  R  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  P  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  G  E  P  *  *  P  H  V  V  P  L  E  P  E  V  L  V  Q  R  T  L  G  V  S  G  P  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  S  L  *  R  T  S  S  H  D  L  F  H  G  P  L  P  L  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107420" stop="107674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSVVLVTTITSTTTPSRKTVSTMTTSTSSYWGSVTWSGTISPNMSNLPTSITFFGVDHMPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108452" stop="108697"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCLALIRQPAKISQNLIDHLWGRLGWHFLILHSFSFPILPFSYYLLSRWRSLCPSIRWARCLSSPSRGRPPTTSSTAPCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106253" stop="106492"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQAHERSRGIRKTKGHHYEFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108221" stop="108451"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIISILRFSTLEDWRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYLWSLRCWCREH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106761" stop="106961"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSISLSDGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLIIFLARRKETMRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108501" stop="108698"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGISSFCTRSVSPSSPSLITSSVGGGVSALVSDGLGACPLPLEDVLPRPLPRPLAAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106185" stop="106382"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="8"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107730" stop="107924"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRRLFDVDVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRQIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="108005" PGL_stop="106561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108005" e_stop="107833"/>
            <exon e_start="107088" e_stop="106561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.084" e_score="0.913"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="108005" e_stop="107833" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.084">
            <gDNA_intron_boundary i_start="107832" i_stop="107089" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="107088" e_stop="106561" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108005" stop="107833"/>
              <exon start="107088" stop="106561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGCTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTTGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGACGTGATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCGTCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCATCGGATAGGGATATTGACTTCTATATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTAAAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  L  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  R  D  S  G  Y  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  F  Q  S  G  P  H  R  L  L  S  S  C  *  E  N  D  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  I  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  K  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  I  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  C  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  V  S  F  L  R  A  K  K  M  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  S  D  R  D  I  D  F  Y  I  D  L  E  P  G  T  R  P  I  S  I  P  P  *  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  M  L  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  G  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  L  R  Q  N  P  S  K  :  K  W  M  I  L  T  *  F  W  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  R  K  *  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  I  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  K  E  W  L  P  R  S  *  E  S  *  K  H  N  F  K  S  Y  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108004" stop="107833"/>
                    <exon start="107088" stop="106712"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERICRFVKGLRSELRISALQIAATAKSFQEMDDFDVILGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIVSFLRAKKMISKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPSDRDIDFYIDLEPGTRPISIPP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="108632" PGL_stop="108079"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108632" e_stop="108079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="108632" e_stop="108079" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108632" stop="108079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGAGACTCCTCCACCGACTGAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAACTGAACGAGTGCAGAATGAGGAAATGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCCCTAGTGTTCTCTGCACCAGCACCTCAGGCTCCAGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCGGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTCGAGTGTCAACCAATAGAGGCACCATCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  R  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  N  *  T  S  A  E  *  G  N  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  V  *  S  G  P  D  T  P  S  V  L  C  T  S  T  S  G  S  R  G  T  T  C  G  Y  Y  G  S  P  H  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  G  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  R  V  S  T  N  R  G  T  I  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  E  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  T  E  R  V  Q  N  E  E  M  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  L  V  F  S  A  P  A  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  I  E  A  P  S  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  R  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  L  N  E  C  R  M  R  K  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  C  L  I  R  A  R  H  P  *  C  S  L  H  Q  H  L  R  L  Q  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  R  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  S  S  V  N  Q  *  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108631" stop="108080"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAETPPPTEEVIREGEDGETERVQNEEMPPQPTPEMINQVLAYLSGLSDQGQTPLVFSAPAPQAPEVQHAATMAPRMDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPIEAPSMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="108991" PGL_stop="108706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108991" e_stop="108706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="108991" e_stop="108706" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108991" stop="108706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCAACTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACGTCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  Q  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  S  A  R  Q  E  T  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  N  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  R  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  T  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  V  G  Q  T  R  N  N  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0249E07.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108942" stop="108706"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLTNFTLFRRWLELEQRLRQHQRRPDKKQLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 106 chains have been computed
$ 
$ memory statistics:
$ 221240 bytes spliced alignments in total
$ 33 spliced alignments have been stored
$ 6704 bytes was the average size of a spliced alignment
$ 32480 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1412 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 136 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 06:01:30
-->
