SW perc perc perc query position in query matching repeat position in repeat score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID 344 11.8 0.0 2.9 C11HBa0054I23.2 3351 3420 (163324) + Unknown00037 Unknown 4491 4558 (281) 1 * 352 6.9 1.4 0.0 C11HBa0054I23.2 3359 3430 (163314) + Copia00181 Copia 1801 1873 (363) 2 348 7.5 2.4 4.8 C11HBa0054I23.2 3371 3454 (163290) + Gypsy00019 Gypsy 597 678 (6239) 3 * 263 10.7 0.0 1.8 C11HBa0054I23.2 6300 6356 (160388) + GYCUME1_LTR Unknown 351 406 (2240) 4 229 14.0 0.0 0.0 C11HBa0054I23.2 6318 6367 (160377) + Gypsy00046 Gypsy 4129 4178 (6893) 5 * 2547 2.9 6.0 0.0 C11HBa0054I23.2 13881 14195 (152549) C Copia00037 Copia (2208) 2876 2543 6 258 3.6 7.0 1.8 C11HBa0054I23.2 16113 16169 (150575) C MuSHAN_MT Unknown (889) 3813 3754 7 253 7.0 1.8 0.0 C11HBa0054I23.2 16124 16180 (150564) + Copia00112 Copia 7613 7670 (1217) 8 * 251 32.0 5.6 5.6 C11HBa0054I23.2 16678 16839 (149905) + TS2 Unknown 489 650 (5) 9 236 24.4 0.0 3.7 C11HBa0054I23.2 17121 17201 (149543) + DT1 Unknown 185 262 (0) 10 723 18.1 0.7 0.0 C11HBa0054I23.2 37000 37137 (129607) C SINE_SO Unknown (48) 141 3 11 404 29.6 7.5 2.8 C11HBa0054I23.2 37847 38058 (128686) C Copia00079 Copia (1343) 2837 2616 12 823 24.3 1.1 0.5 C11HBa0054I23.2 38499 38688 (128056) C Copia00079 Copia (3981) 199 9 13 733 14.4 4.0 2.7 C11HBa0054I23.2 42771 42920 (123824) + Unknown00046 Unknown 1897 2048 (7996) 14 242 24.1 2.5 2.5 C11HBa0054I23.2 42940 43020 (123724) + Gypsy00058 Gypsy 3576 3656 (4034) 15 304 25.0 0.0 0.0 C11HBa0054I23.2 48973 49036 (117708) C Unknown00049 Unknown (7243) 1788 1725 16 616 16.9 2.8 0.8 C11HBa0054I23.2 49055 49178 (117566) C TS2 Unknown (0) 2058 543 17 1027 18.8 3.4 0.0 C11HBa0054I23.2 64597 64803 (101941) + Unknown00034 Unknown 3820 4033 (5044) 18 266 10.3 5.1 1.7 C11HBa0054I23.2 67985 68043 (98701) C Unknown00035 Unknown (2802) 79 19 19 255 12.4 3.0 1.5 C11HBa0054I23.2 68815 68832 (97912) + GYCUME1_LTR Unknown 323 375 (2271) 20 301 9.2 0.0 2.2 C11HBa0054I23.2 68833 68921 (97823) C Gypsy00019 Gypsy (6234) 683 597 21 285 7.2 0.0 0.0 C11HBa0054I23.2 68851 68933 (97811) C STOWAWAY50_OS Unknown (43) 131 49 22 * 255 12.4 3.0 1.5 C11HBa0054I23.2 68922 68945 (97799) + GYCUME1_LTR Unknown 376 447 (2199) 20 * 238 13.4 2.9 1.5 C11HBa0054I23.2 80348 80415 (86329) + Copia00112 Copia 7623 7691 (1196) 23 251 17.2 0.0 0.0 C11HBa0054I23.2 83577 83634 (83110) C Gypsy00042 Gypsy (1495) 6003 5946 24 1275 20.1 3.8 1.9 C11HBa0054I23.2 89355 89669 (77075) + Gypsy00049 Gypsy 218 538 (13992) 25 * 1841 18.0 4.3 4.7 C11HBa0054I23.2 89592 90103 (76641) C Copia00145 Copia (1) 12418 11909 26 506 24.1 8.4 7.7 C11HBa0054I23.2 89857 90143 (76601) + Unknown00019 Unknown 3834 4122 (10511) 27 * 249 31.7 5.1 7.5 C11HBa0054I23.2 89915 90384 (76360) + Gypsy00049 Gypsy 766 1224 (13306) 28 * 372 34.3 1.1 2.8 C11HBa0054I23.2 90693 90872 (75872) + Gypsy00049 Gypsy 1535 1711 (12819) 28 291 32.1 0.0 0.0 C11HBa0054I23.2 90786 90894 (75850) + Unknown00019 Unknown 4767 4875 (9758) 29 * 2408 21.8 5.2 0.5 C11HBa0054I23.2 91866 92437 (74307) + Gypsy00049 Gypsy 2702 3300 (11230) 30 1743 26.2 8.3 2.6 C11HBa0054I23.2 91867 92516 (74228) + Unknown00019 Unknown 5810 6496 (8137) 29 * 41993 20.0 0.9 0.7 C11HBa0054I23.2 92535 100444 (66300) + Gypsy00049 Gypsy 3448 11373 (3157) 31 12056 21.6 2.5 15.9 C11HBa0054I23.2 99445 104064 (62680) + Unknown00019 Unknown 10506 14504 (129) 32 * 14098 15.6 8.5 4.9 C11HBa0054I23.2 101163 104079 (62665) + Copia00149 Copia 5253 8274 (6209) 33 345 17.8 3.3 0.0 C11HBa0054I23.2 104074 104163 (62581) + Copia00112 Copia 7613 7705 (1182) 34 * 941 19.2 4.7 2.5 C11HBa0054I23.2 106987 107221 (59523) + Gypsy00049 Gypsy 218 457 (14073) 35 367 15.5 7.9 13.4 C11HBa0054I23.2 109539 109665 (57079) C Copia00039 Copia (3505) 1045 926 36 * 1348 10.8 0.0 1.9 C11HBa0054I23.2 109641 109848 (56896) C Copia00039 Copia (4084) 466 263 36 409 26.0 1.9 0.0 C11HBa0054I23.2 112809 112912 (53832) C SOD_SINE Unknown (53) 192 87 37 714 7.4 0.0 3.6 C11HBa0054I23.2 115491 115602 (51142) C Copia00172 Copia (6102) 525 418 38 323 25.3 0.0 1.1 C11HBa0054I23.2 116674 116761 (49983) C Copia00151 Copia (581) 10180 10094 39 1655 27.8 4.6 2.8 C11HBa0054I23.2 117501 118162 (48582) C TS2 Unknown (1) 654 5 40 689 30.7 7.9 3.2 C11HBa0054I23.2 120057 120551 (46193) C Unknown00057 Unknown (2635) 991 474 41 260 32.9 1.3 2.0 C11HBa0054I23.2 120455 120603 (46141) + Unknown00043 Unknown 5585 5732 (5592) 42 * 328 15.4 3.8 1.3 C11HBa0054I23.2 121653 121731 (45013) C Copia00143 Copia (5101) 203 123 43 298 28.8 0.9 0.9 C11HBa0054I23.2 121787 121891 (44853) C Copia00151 Copia (1088) 9673 9569 44 247 22.0 20.2 3.9 C11HBa0054I23.2 122321 122424 (44320) + Unknown00019 Unknown 7385 7505 (7128) 45 339 23.0 6.9 4.1 C11HBa0054I23.2 123667 123811 (42933) + Gypsy00049 Gypsy 256 404 (14126) 46 598 19.7 0.8 0.8 C11HBa0054I23.2 127003 127130 (39614) + Copia00039 Copia 264 391 (4159) 47 510 24.2 0.6 3.7 C11HBa0054I23.2 132774 132936 (33808) + Copia00151 Copia 8213 8370 (2391) 48 244 19.6 0.0 0.0 C11HBa0054I23.2 134247 134292 (32452) C DTPH1 Unknown (565) 255 210 49 643 30.7 10.7 2.3 C11HBa0054I23.2 140387 140696 (26048) + TS2 Unknown 1 336 (319) 50 381 30.9 10.6 0.0 C11HBa0054I23.2 140932 141054 (25690) + TS2 Unknown 512 647 (8) 50 529 22.9 0.4 3.3 C11HBa0054I23.2 144090 144251 (22493) + TS Unknown 57 2034 (2) 51 863 21.5 6.0 4.4 C11HBa0054I23.2 148348 148595 (18149) + TS2 Unknown 404 655 (0) 52 248 8.3 0.0 0.0 C11HBa0054I23.2 150301 150336 (16408) + Unknown00025 Unknown 1034 1069 (5239) 53 564 22.6 0.0 0.8 C11HBa0054I23.2 156782 156906 (9838) C Copia00172 Copia (1312) 5315 5192 54 492 27.9 1.0 3.5 C11HBa0054I23.2 159992 160188 (6556) C Unknown00043 Unknown (2445) 8879 8688 55 266 29.3 9.0 1.2 C11HBa0054I23.2 161244 161409 (5335) + RTE1_MT Unknown 2054 2232 (923) 56