<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 12:04:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C11HBa0107K14-z60Yc/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-p4n3EO/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-p4n3EO/sgn_marker_seqs" ref_id="SGN-M9212" ref_strand="+" ref_description="SGN-M9212 C2_At5g65495 [cosii_markers]">
      <seq>caagatcgtaacactattccaaatttcccaatcaaaatgtgttacggcggtcaacgattaccgtcaaaagacgacttaaccgacccgacccgacggacccgaactttaccggcggcgaacgagaacgcagtggtggttgaaaatcttcgggaccggttagctgagacggaggcgcggctggaacgagctagggctcgggaagcggagctgagccggcagctggaagagatgaagaggtacgtctgcgttatggaaattctggaatgttacctcaagcgccgatacagggaacagcaagttagaaccctagcagtggtaaattcgaagtaaagatgatttttatgtggttaaaatggattattagggtttcgtgatttatgtaatcatgtgtgttgtaattgtatattcttcagtgtgatatagaattgttaatctattgaacttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-z60Yc/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="16410" stop="15361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16110" g_stop="15664" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="494"/>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-M9212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M9212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16110" e_stop="15664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAA</genome_strand>
        <mrna_strand>CAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-p4n3EO/sgn_marker_seqs" ref_id="SGN-M121-F" ref_strand="+" ref_description="SGN-M121-F TG523-F [rflp_markers_forward]">
      <seq>aaaacatggaagaggaggatttcagtcctgtagatgttgatttcaatcttgtaaagaatttcctggattcgttttcttctcaagatggacttccaggacctgcttctaacttgcttggacttatgggtctacagctaccaccagatgctagcaaagggaaataaccatattatacacaaacttgtttcctcattcttcttttccttgcctttttctaaacggcaatctttacaatactatgtattacgtatgttttaacttcaaacggagaaaaaaggaggaggtggatttatgtggtattttccatttttgaccatcaaataatttatatattgataaattatgtaaaaaatattataagttgacgaaatttatcatgaccaggaagtgaagtagtaggttttggttgtgactttttgacttagaacatcaaatttggaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-z60Yc/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="+" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="29370" stop="30414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29670" g_stop="30114" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="+" ref_id="SGN-M121-F" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M121-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29670" e_stop="30114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATGGAAGAGGAGGATTTCAGTCCTGTAGATGTTGATTTCAATCTTGTAAAGAATTTCCTGGATTCGTTTTCTTCTCAAGATGGACTTCCAGGACCTGCTTCTAACTTGCTTGGACTTATGGGTCTACAGCTACCACCAGATGCTAGCAAAGGGAAATAACCATATTATACACAAACTTGTTTCCTCATTCTTCTTTTCCTTGCCTTTTTCTAAACGGCAATCTTTACAATACTATGTATTACGTATGTTTTAACTTCAAACGGAGAAAAAAGGAGGAGGTGGATTTATGTGGTATTTTTCATTTTTGACCATCAAATAATTTATATATTGATAAATTATGTAAAAAATATTATAAGTTGACGAAATTTATCATGACCAGGAAGTGAAGTAGTAGGTTTTGGTTGTGACTTTTTGACTTAGAACATCAAATTTGGAATAAT</genome_strand>
        <mrna_strand>AAAACATGGAAGAGGAGGATTTCAGTCCTGTAGATGTTGATTTCAATCTTGTAAAGAATTTCCTGGATTCGTTTTCTTCTCAAGATGGACTTCCAGGACCTGCTTCTAACTTGCTTGGACTTATGGGTCTACAGCTACCACCAGATGCTAGCAAAGGGAAATAACCATATTATACACAAACTTGTTTCCTCATTCTTCTTTTCCTTGCCTTTTTCTAAACGGCAATCTTTACAATACTATGTATTACGTATGTTTTAACTTCAAACGGAGAAAAAAGGAGGAGGTGGATTTATGTGGTATTTTCCATTTTTGACCATCAAATAATTTATATATTGATAAATTATGTAAAAAATATTATAAGTTGACGAAATTTATCATGACCAGGAAGTGAAGTAGTAGGTTTTGGTTGTGACTTTTTGACTTAGAACATCAAATTTGGAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-p4n3EO/sgn_marker_seqs" ref_id="SGN-M121-R" ref_strand="+" ref_description="SGN-M121-R TG523-R [rflp_markers_reverse]">
      <seq>tgctgcaaatgaagataaaagaccacattcacaaaactcacttttaacctgaaaggagaaaaaacatgaaggaaatactaaccaggaaccaactcagattcatctgttccagcgatacaatgaggaggattaggtggctcaggcacatcaggatgatgcgaatcacgaagtgcataaataggccatttcttctcacagaacacttttgcaagtttaactgactcatcaaccattgctgaaatttgtctatttggtgtcaccggagcctatagcaaaacaaatggcacaaaatcacaatctaactgatatatgaggaataagaatcacatgaattgcttagcgaaactaacgagttatccactatagtcacaaaaatagtcgaaaaacaaacattagaacaacatacgaatagaaagagagagagaacaaaacaactcaaaaaagataacatagattgaatgaagctccttactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-z60Yc/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="32283" stop="31209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31983" g_stop="31509" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-M121-R" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M121-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31983" e_stop="31509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCAAATGATGATAAAAGACCACATTCACAAAACTCACTTTTAACCTGAAAGGAGAAAAAACATGAAGGAAATACTAACCAGGAACCAACTCAGATTCATCTGTTCCAGCGATACAATGAGGAGGATTAGGTGGCTCAGGCACATCAGGATGATGCGAATCACGAAGTGCATAAATAGGCCATTTCTTCTCACAGAACACTTTTGCAAGTTTAACTGACTCATCAACCATTGCTGAAATTTGTCTATTTGGTGTCACCGGAGCCTATAGCAAAACAAATGGCACAAAATCACAATCTAACTGATATATGAGGAATAAGAATCACATGAATTGCTTAGCGAAACTAACGAGTTATCCACTATAGTCACAAAAATAGTCGAAAAACAAACATTAGAACAACATACTAATAGAAAGAGAGAGAGAACAAAACAACTCAAAAAAGATAACATAGATTGAATGAAGCTCCTTACTGG</genome_strand>
        <mrna_strand>TGCTGCAAATGAAGATAAAAGACCACATTCACAAAACTCACTTTTAACCTGAAAGGAGAAAAAACATGAAGGAAATACTAACCAGGAACCAACTCAGATTCATCTGTTCCAGCGATACAATGAGGAGGATTAGGTGGCTCAGGCACATCAGGATGATGCGAATCACGAAGTGCATAAATAGGCCATTTCTTCTCACAGAACACTTTTGCAAGTTTAACTGACTCATCAACCATTGCTGAAATTTGTCTATTTGGTGTCACCGGAGCCTATAGCAAAACAAATGGCACAAAATCACAATCTAACTGATATATGAGGAATAAGAATCACATGAATTGCTTAGCGAAACTAACGAGTTATCCACTATAGTCACAAAAATAGTCGAAAAACAAACATTAGAACAACATACGAATAGAAAGAGAGAGAGAACAAAACAACTCAAAAAAGATAACATAGATTGAATGAAGCTCCTTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-p4n3EO/sgn_marker_seqs" ref_id="SGN-M1256" ref_strand="+" ref_description="SGN-M1256 SSR583 [est_by_read_no_qc_info]">
      <seq>ttggatcaaccatcactttaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggtatgcatctaatggaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgatcctcctcctcaagatgatgatagttctgatacttctctcaaattggggctaccttactcaggctgaagagatcaaaagcaaggtgtggctatttttgtatgttattagaagaaggagaaaaaaaaaagtaactactaattattataattaattaatgtctgattaatgtaaaagctaaccccaaaaatttcatattatggatgtaattggtgtattaatctcatgtattcgtctcccattagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-z60Yc/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="93933" stop="91107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93633" g_stop="93607" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93606" i_stop="93529" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93528" g_stop="93464" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="92" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93463" i_stop="93262" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93261" g_stop="93162" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="192" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93161" i_stop="93025" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93024" g_stop="92983" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="234" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92982" i_stop="92877" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92876" g_stop="92835" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="276" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92834" i_stop="92559" i_length="276">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92558" g_stop="92359" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="476" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92358" i_stop="91603" i_length="756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91602" g_stop="91407" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="673" r_length="197" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-M1256" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93633" e_stop="93607"/>
          <exon e_start="93528" e_stop="93464"/>
          <exon e_start="93261" e_stop="93162"/>
          <exon e_start="93024" e_stop="92983"/>
          <exon e_start="92876" e_stop="92835"/>
          <exon e_start="92558" e_stop="92359"/>
          <exon e_start="91602" e_stop="91407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTATGTATGTAATTGGTGTATTAATCTCATGTATTCGTCTCCCA-TAGTT</genome_strand>
        <mrna_strand>TTGGATCAACCATCACTTTAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTATGGATGTAATTGGTGTATTAATCTCATGTATTCGTCTCCCATTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-p4n3EO/sgn_marker_seqs" ref_id="SGN-M737" ref_strand="+" ref_description="SGN-M737 SSR64 [est_by_read_no_qc_info]">
      <seq>ttggatcaaccatcactttaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggtatgcatctaatggaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgatcctcctcctcaagatgatgatagttctgatacttctctcaaattggggctaccttactcaggctgaagagatcaaaagcaaggtgtggctatttttgtatgttattagaagaaggagaaaaaaaaaagtaactactaattattataattaattaatgtctgattaatgtaaaagctaaccccaaaaatttcatattatggatgtaattggtgtattaatctcatgtattcgtctcccattagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-z60Yc/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="93933" stop="91107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93633" g_stop="93607" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93606" i_stop="93529" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93528" g_stop="93464" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="92" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93463" i_stop="93262" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93261" g_stop="93162" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="192" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93161" i_stop="93025" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93024" g_stop="92983" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="234" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92982" i_stop="92877" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92876" g_stop="92835" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="276" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92834" i_stop="92559" i_length="276">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92558" g_stop="92359" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="476" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92358" i_stop="91603" i_length="756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91602" g_stop="91407" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="673" r_length="197" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-M737" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93633" e_stop="93607"/>
          <exon e_start="93528" e_stop="93464"/>
          <exon e_start="93261" e_stop="93162"/>
          <exon e_start="93024" e_stop="92983"/>
          <exon e_start="92876" e_stop="92835"/>
          <exon e_start="92558" e_stop="92359"/>
          <exon e_start="91602" e_stop="91407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTATGTATGTAATTGGTGTATTAATCTCATGTATTCGTCTCCCA-TAGTT</genome_strand>
        <mrna_strand>TTGGATCAACCATCACTTTAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTATGGATGTAATTGGTGTATTAATCTCATGTATTCGTCTCCCATTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-p4n3EO/sgn_marker_seqs" ref_id="SGN-M1256-2" ref_strand="+" ref_description="SGN-M1256-2 SSR583-2 [est_by_read]">
      <seq>aaaaattggatcaaccatcactttaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggtatgcatctaatggaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgatcctcctcctcaagatgatgatagttctgatacttctctcaaattggggctaccttactcaggctgaagagatcaaaagcaaggtgtggctatttttgtatgttattagaagaaggagaaaaaaaaaagtaactactaattattataattaattaatgtctgattaatgtaaaagctaaccccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-z60Yc/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="93938" stop="91164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93638" g_stop="93607" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93606" i_stop="93529" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93528" g_stop="93464" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="97" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93463" i_stop="93262" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93261" g_stop="93162" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="197" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93161" i_stop="93025" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93024" g_stop="92983" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="239" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92982" i_stop="92877" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92876" g_stop="92835" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="281" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92834" i_stop="92559" i_length="276">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92558" g_stop="92359" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="481" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92358" i_stop="91603" i_length="756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91602" g_stop="91464" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="620" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-M1256-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1256-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93638" e_stop="93607"/>
          <exon e_start="93528" e_stop="93464"/>
          <exon e_start="93261" e_stop="93162"/>
          <exon e_start="93024" e_stop="92983"/>
          <exon e_start="92876" e_stop="92835"/>
          <exon e_start="92558" e_stop="92359"/>
          <exon e_start="91602" e_stop="91464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAA</genome_strand>
        <mrna_strand>AAAAATTGGATCAACCATCACTTTAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-p4n3EO/sgn_marker_seqs" ref_id="SGN-M1319" ref_strand="+" ref_description="SGN-M1319 P39 [est_clones]">
      <seq>aaaaattggatcaaccatcactttaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggtatgcatctaatggaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgatcctcctcctcaagatgatgatagttctgatacttctctcaaattggggctaccttactcaggctgaagagatcaaaagcaaggtgtggctatttttgtatgttattagaagaaggagaaaaaaaaaagtaactactaattattataattaattaatgtctgattaatgtaaaagctaaccccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-z60Yc/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="93938" stop="91164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93638" g_stop="93607" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93606" i_stop="93529" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93528" g_stop="93464" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="97" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93463" i_stop="93262" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93261" g_stop="93162" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="197" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93161" i_stop="93025" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93024" g_stop="92983" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="239" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92982" i_stop="92877" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92876" g_stop="92835" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="281" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92834" i_stop="92559" i_length="276">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92558" g_stop="92359" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="481" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92358" i_stop="91603" i_length="756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91602" g_stop="91464" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="620" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-M1319" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93638" e_stop="93607"/>
          <exon e_start="93528" e_stop="93464"/>
          <exon e_start="93261" e_stop="93162"/>
          <exon e_start="93024" e_stop="92983"/>
          <exon e_start="92876" e_stop="92835"/>
          <exon e_start="92558" e_stop="92359"/>
          <exon e_start="91602" e_stop="91464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAA</genome_strand>
        <mrna_strand>AAAAATTGGATCAACCATCACTTTAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-p4n3EO/sgn_marker_seqs" ref_id="SGN-M737-2" ref_strand="+" ref_description="SGN-M737-2 SSR64-2 [est_by_read]">
      <seq>aaaaattggatcaaccatcactttaacttcagcttgtagaaaatagcaactactccagattaagcaaggaaatttccgaaaaaagtcatcgattaaggcaaatgaggggagaagaacttcaaggactaaatattgaagagttgcaacaattggagagatctcttgaaactggattgagccgcgtcatagagagaaagggtgataaaataatgagagagatcaaccaactccaacaaaagggtatgcatctaatggaagaaaatgaaaaattaaggcaacaggtgatggagatatctaataataataataataataataatggatatagagaggcaggagtagtaatatttgaaccagaaaatggatttaataataataataatgaagatggccaatcatctgaatcagtaacaaatccatgtaactcaattgatcctcctcctcaagatgatgatagttctgatacttctctcaaattggggctaccttactcaggctgaagagatcaaaagcaaggtgtggctatttttgtatgttattagaagaaggagaaaaaaaaaagtaactactaattattataattaattaatgtctgattaatgtaaaagctaaccccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C11HBa0107K14-z60Yc/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C11HBa0107K14.1" temp_strand="-" temp_description="C11HBa0107K14.1  AC212435.1 htgs_phase:2 submitted_to_sgn_as:C11HBa0107K14 sequenced_by:ivf-caas upload_account_name:china11">
        <position start="93938" stop="91164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93638" g_stop="93607" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93606" i_stop="93529" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93528" g_stop="93464" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="97" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93463" i_stop="93262" i_length="202">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93261" g_stop="93162" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="197" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93161" i_stop="93025" i_length="137">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93024" g_stop="92983" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="239" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92982" i_stop="92877" i_length="106">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92876" g_stop="92835" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="281" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92834" i_stop="92559" i_length="276">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92558" g_stop="92359" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="481" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92358" i_stop="91603" i_length="756">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="91602" g_stop="91464" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="620" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C11HBa0107K14.1" gen_strand="-" ref_id="SGN-M737-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C11HBa0107K14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M737-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93638" e_stop="93607"/>
          <exon e_start="93528" e_stop="93464"/>
          <exon e_start="93261" e_stop="93162"/>
          <exon e_start="93024" e_stop="92983"/>
          <exon e_start="92876" e_stop="92835"/>
          <exon e_start="92558" e_stop="92359"/>
          <exon e_start="91602" e_stop="91464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGGATCAACCATCACTTGAACTTCAGGTAATTAATTCATTTATTTAATCCTTAATTACATTTTAATTAGTTTTTAAACAAATATTTTGTTTATTTTGTTTGCAGCTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAGGTATATTTATAGTTACATTTGAAATCGACTATATGTATTCTCACTGTTCTTTTTAGTTCAATTCATAATATCCATCATCACATACGTCAAACAAAAGTAAAAGAGAGACAAGTTAATTTATATATATATATATATATATATAAAAAATTACGATAATAATAATAATATTAGAAGTTCTCTAACAAGTAGCATCGATTAACAGGCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAGGTCGGGATTTAACTTATATATATTGACATTATAAAATATATTTTATGTTATTAGTGTAATTTAATATGTCGTAACAAGTTATAATCGATTTTTCCCCTTTTTAATATCTTACACAACTTACGTTATCCATGTATCAGGGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAGGTTAGGAACAATATCGTTTAAGTGATCTGGTAGTGTATAATTTTTGTATCGCAATTTTACTTGGTTTTCATCGACGCTGATAATTGTTATTGTGAAAAATCAACAGGGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAGGTATGCAAATTTTTTAACGAATGAGATAAAAATTGATTATTTTACTATAATTTTAGATAGCCGGTGATTACTGAAATCTCCGAGACATCAGGTTGAAATTTCAATAAAATCTATGAATTTGTAGATGATTTTTTCCTATTTCCGAAATCTCCGAAAAACTTAAGCTTTTTAAAATTAACTTTTTTATGGATACACTTGGAGTATCTAAATTATTCAAGACTTCAATAATTATGTTATTAAATGTTATCGTTGATATATATTTTTAATTTTTTTTAGGTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGGGTTAGTACTTTAATTCTTTCTTCTTCTTTTTTCCGGTCTCGTTTCGATCTCGTTTCGTATGAAAGATAAAAGAAATTATTAATTTCAATTTTAATTTTGTGAAGAAATAATCTATTTTGAATTGTTGTGTTGTTTGTTTTTAATACTGAAGGCGGAATAATGATTTTTAGAGAACTTATCCTAGAATTATTTTGAGATAACTTATTTTCCGTTCAAACGAATTGTGGTCGTGAAAAAATATTCGTTTATCAATACACTATTGGTAAATTGTATATCAAGTATCTACCTTCTGAAGGTGTTGCATACATATTACCCTTTTTAAACTTTACTTCGGTATCATGTTATTGTATATTGTTTATGTAAAGGGACAACAAAAGTTAGGGGCTAATCGAGTTCAGTAATTTTGACTCAAATATGATATTTGTGGGTTAAATTTTTTTATGAATATTTTATTATCGAAAGTAGAAGTCTTTGTACGGATTTGAATGAACCAAATATCTTTAGTTCATATCTTTGTATTGGTATTTAGAATACTCATAAATATGTACATTTTTTTTTTAATTCAAAACCTCGTTACTAACCCTTGATGTTGTTATCTTAAAATTTAGAACGTATACGTAATATTTAAATTTCAACTCTGTTCTATAGGTTCACCTTCATGTTCTAAATTTATAACCCATAATACATAAATTTAAAATTCTGAGTCCGTTTCTGATATTATATTTTTTTTCATCTTATTTGTTTTTTAAATGTCAGGCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAA</genome_strand>
        <mrna_strand>AAAAATTGGATCAACCATCACTTTAACTTCAG..............................................................................CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG..........................................................................................................................................................................................................GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG.........................................................................................................................................GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG..........................................................................................................GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG....................................................................................................................................................................................................................................................................................GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="16110" PGL_stop="15664"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16110" e_stop="15664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16110" e_stop="15664" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16110" stop="15664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9212" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGATCGTAACACTATTCCAAATTTCCCAATCAAAATGTGTTACGGCGGTCAACGATTACCGTCAAAAGACGACTTAACCGACCCGACCCGACGGACCCGAACTTTACCGGCGGCGAACGAGAACGCAGTGGTGGTTGAAAATCTTCGGGACCGGTTAGCTGAGACGGAGGCGCGGCTGGAACGAGCTAGGGCTCGGGAAGCGGAGCTGAGCCGGCAGCTGGAAGAGATGAAGAGGTACGTCTGCGTTATGGAAATTCTGGAATGTTACCTCAAGCGCCGATACAGGGAACAGCAAGTTAGAACCCTAGCAGTGGTAAATTCGAAGTAAAGATGATTTTTATGTGGTTAAAATGGATTATTAGGGTTTCGTGATTTATGTAATCATGTGTGTTGTAATTGTATATTCTTCAGTGTGATATAGAATTGTTAATCTATTGAACTTGAA</gDNA_template>
            <first_frame> Q  D  R  N  T  I  P  N  F  P  I  K  M  C  Y  G  G  Q  R  L  P  S  K  D  D  L  T  D  P  T  R  R  T  R  T  L  P  A  A  N  E  N  A  V  V  V  E  N  L  R  D  R  L  A  E  T  E  A  R  L  E  R  A  R  A  R  E  A  E  L  S  R  Q  L  E  E  M  K  R  Y  V  C  V  M  E  I  L  E  C  Y  L  K  R  R  Y  R  E  Q  Q  V  R  T  L  A  V  V  N  S  K  *  R  *  F  L  C  G  *  N  G  L  L  G  F  R  D  L  C  N  H  V  C  C  N  C  I  F  F  S  V  I  *  N  C  *  S  I  E  L  E </first_frame>
            <second_frame>  K  I  V  T  L  F  Q  I  S  Q  S  K  C  V  T  A  V  N  D  Y  R  Q  K  T  T  *  P  T  R  P  D  G  P  E  L  Y  R  R  R  T  R  T  Q  W  W  L  K  I  F  G  T  G  *  L  R  R  R  R  G  W  N  E  L  G  L  G  K  R  S  *  A  G  S  W  K  R  *  R  G  T  S  A  L  W  K  F  W  N  V  T  S  S  A  D  T  G  N  S  K  L  E  P  *  Q  W  *  I  R  S  K  D  D  F  Y  V  V  K  M  D  Y  *  G  F  V  I  Y  V  I  M  C  V  V  I  V  Y  S  S  V  *  Y  R  I  V  N  L  L  N  L   </second_frame>
            <third_frame>   R  S  *  H  Y  S  K  F  P  N  Q  N  V  L  R  R  S  T  I  T  V  K  R  R  L  N  R  P  D  P  T  D  P  N  F  T  G  G  E  R  E  R  S  G  G  *  K  S  S  G  P  V  S  *  D  G  G  A  A  G  T  S  *  G  S  G  S  G  A  E  P  A  A  G  R  D  E  E  V  R  L  R  Y  G  N  S  G  M  L  P  Q  A  P  I  Q  G  T  A  S  *  N  P  S  S  G  K  F  E  V  K  M  I  F  M  W  L  K  W  I  I  R  V  S  *  F  M  *  S  C  V  L  *  L  Y  I  L  Q  C  D  I  E  L  L  I  Y  *  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16110" stop="15781"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDRNTIPNFPIKMCYGGQRLPSKDDLTDPTRRTRTLPAANENAVVVENLRDRLAETEARLERARAREAELSRQLEEMKRYVCVMEILECYLKRRYREQQVRTLAVVNSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="29670" PGL_stop="30114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29670" e_stop="30114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="29670" e_stop="30114" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29670" stop="30114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M121-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACATGGAAGAGGAGGATTTCAGTCCTGTAGATGTTGATTTCAATCTTGTAAAGAATTTCCTGGATTCGTTTTCTTCTCAAGATGGACTTCCAGGACCTGCTTCTAACTTGCTTGGACTTATGGGTCTACAGCTACCACCAGATGCTAGCAAAGGGAAATAACCATATTATACACAAACTTGTTTCCTCATTCTTCTTTTCCTTGCCTTTTTCTAAACGGCAATCTTTACAATACTATGTATTACGTATGTTTTAACTTCAAACGGAGAAAAAAGGAGGAGGTGGATTTATGTGGTATTTTTCATTTTTGACCATCAAATAATTTATATATTGATAAATTATGTAAAAAATATTATAAGTTGACGAAATTTATCATGACCAGGAAGTGAAGTAGTAGGTTTTGGTTGTGACTTTTTGACTTAGAACATCAAATTTGGAATAAT</gDNA_template>
            <first_frame> K  T  W  K  R  R  I  S  V  L  *  M  L  I  S  I  L  *  R  I  S  W  I  R  F  L  L  K  M  D  F  Q  D  L  L  L  T  C  L  D  L  W  V  Y  S  Y  H  Q  M  L  A  K  G  N  N  H  I  I  H  K  L  V  S  S  F  F  F  S  L  P  F  S  K  R  Q  S  L  Q  Y  Y  V  L  R  M  F  *  L  Q  T  E  K  K  G  G  G  G  F  M  W  Y  F  S  F  L  T  I  K  *  F  I  Y  *  *  I  M  *  K  I  L  *  V  D  E  I  Y  H  D  Q  E  V  K  *  *  V  L  V  V  T  F  *  L  R  T  S  N  L  E  *  </first_frame>
            <second_frame>  K  H  G  R  G  G  F  Q  S  C  R  C  *  F  Q  S  C  K  E  F  P  G  F  V  F  F  S  R  W  T  S  R  T  C  F  *  L  A  W  T  Y  G  S  T  A  T  T  R  C  *  Q  R  E  I  T  I  L  Y  T  N  L  F  P  H  S  S  F  P  C  L  F  L  N  G  N  L  Y  N  T  M  Y  Y  V  C  F  N  F  K  R  R  K  K  E  E  V  D  L  C  G  I  F  H  F  *  P  S  N  N  L  Y  I  D  K  L  C  K  K  Y  Y  K  L  T  K  F  I  M  T  R  K  *  S  S  R  F  W  L  *  L  F  D  L  E  H  Q  I  W  N  N </second_frame>
            <third_frame>   N  M  E  E  E  D  F  S  P  V  D  V  D  F  N  L  V  K  N  F  L  D  S  F  S  S  Q  D  G  L  P  G  P  A  S  N  L  L  G  L  M  G  L  Q  L  P  P  D  A  S  K  G  K  *  P  Y  Y  T  Q  T  C  F  L  I  L  L  F  L  A  F  F  *  T  A  I  F  T  I  L  C  I  T  Y  V  L  T  S  N  G  E  K  R  R  R  W  I  Y  V  V  F  F  I  F  D  H  Q  I  I  Y  I  L  I  N  Y  V  K  N  I  I  S  *  R  N  L  S  *  P  G  S  E  V  V  G  F  G  C  D  F  L  T  *  N  I  K  F  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29724" stop="29927"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RISWIRFLLKMDFQDLLLTCLDLWVYSYHQMLAKGNNHIIHKLVSSFFFSLPFSKRQSLQYYVLRMF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="31983" PGL_stop="31509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31983" e_stop="31509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="31983" e_stop="31509" e_length="475"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31983" stop="31509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M121-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTGCAAATGATGATAAAAGACCACATTCACAAAACTCACTTTTAACCTGAAAGGAGAAAAAACATGAAGGAAATACTAACCAGGAACCAACTCAGATTCATCTGTTCCAGCGATACAATGAGGAGGATTAGGTGGCTCAGGCACATCAGGATGATGCGAATCACGAAGTGCATAAATAGGCCATTTCTTCTCACAGAACACTTTTGCAAGTTTAACTGACTCATCAACCATTGCTGAAATTTGTCTATTTGGTGTCACCGGAGCCTATAGCAAAACAAATGGCACAAAATCACAATCTAACTGATATATGAGGAATAAGAATCACATGAATTGCTTAGCGAAACTAACGAGTTATCCACTATAGTCACAAAAATAGTCGAAAAACAAACATTAGAACAACATACTAATAGAAAGAGAGAGAGAACAAAACAACTCAAAAAAGATAACATAGATTGAATGAAGCTCCTTACTGG</gDNA_template>
            <first_frame> C  C  K  *  *  *  K  T  T  F  T  K  L  T  F  N  L  K  G  E  K  T  *  R  K  Y  *  P  G  T  N  S  D  S  S  V  P  A  I  Q  *  G  G  L  G  G  S  G  T  S  G  *  C  E  S  R  S  A  *  I  G  H  F  F  S  Q  N  T  F  A  S  L  T  D  S  S  T  I  A  E  I  C  L  F  G  V  T  G  A  Y  S  K  T  N  G  T  K  S  Q  S  N  *  Y  M  R  N  K  N  H  M  N  C  L  A  K  L  T  S  Y  P  L  *  S  Q  K  *  S  K  N  K  H  *  N  N  I  L  I  E  R  E  R  E  Q  N  N  S  K  K  I  T  *  I  E  *  S  S  L  L  </first_frame>
            <second_frame>  A  A  N  D  D  K  R  P  H  S  Q  N  S  L  L  T  *  K  E  K  K  H  E  G  N  T  N  Q  E  P  T  Q  I  H  L  F  Q  R  Y  N  E  E  D  *  V  A  Q  A  H  Q  D  D  A  N  H  E  V  H  K  *  A  I  S  S  H  R  T  L  L  Q  V  *  L  T  H  Q  P  L  L  K  F  V  Y  L  V  S  P  E  P  I  A  K  Q  M  A  Q  N  H  N  L  T  D  I  *  G  I  R  I  T  *  I  A  *  R  N  *  R  V  I  H  Y  S  H  K  N  S  R  K  T  N  I  R  T  T  Y  *  *  K  E  R  E  N  K  T  T  Q  K  R  *  H  R  L  N  E  A  P  Y  W </second_frame>
            <third_frame>   L  Q  M  M  I  K  D  H  I  H  K  T  H  F  *  P  E  R  R  K  N  M  K  E  I  L  T  R  N  Q  L  R  F  I  C  S  S  D  T  M  R  R  I  R  W  L  R  H  I  R  M  M  R  I  T  K  C  I  N  R  P  F  L  L  T  E  H  F  C  K  F  N  *  L  I  N  H  C  *  N  L  S  I  W  C  H  R  S  L  *  Q  N  K  W  H  K  I  T  I  *  L  I  Y  E  E  *  E  S  H  E  L  L  S  E  T  N  E  L  S  T  I  V  T  K  I  V  E  K  Q  T  L  E  Q  H  T  N  R  K  R  E  R  T  K  Q  L  K  K  D  N  I  D  *  M  K  L  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C11HBa0107K14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="93638" PGL_stop="91407"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93638" e_stop="93607"/>
            <exon e_start="93528" e_stop="93464"/>
            <exon e_start="93261" e_stop="93162"/>
            <exon e_start="93024" e_stop="92983"/>
            <exon e_start="92876" e_stop="92835"/>
            <exon e_start="92558" e_stop="92359"/>
            <exon e_start="91602" e_stop="91407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.969"/>
          <exon-intron don_prob="0.992" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="93638" e_stop="93607" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93606" i_stop="93529" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93528" e_stop="93464" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.541">
            <gDNA_intron_boundary i_start="93463" i_stop="93262" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93261" e_stop="93162" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="93161" i_stop="93025" i_length="137"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93024" e_stop="92983" e_length="42"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.994">
            <gDNA_intron_boundary i_start="92982" i_stop="92877" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="92876" e_stop="92835" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="92834" i_stop="92559" i_length="276"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92558" e_stop="92359" e_length="200"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="92358" i_stop="91603" i_length="756"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="91602" e_stop="91407" e_length="196"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93638" stop="93607"/>
              <exon start="93528" stop="93464"/>
              <exon start="93261" stop="93162"/>
              <exon start="93024" stop="92983"/>
              <exon start="92876" stop="92835"/>
              <exon start="92558" stop="92359"/>
              <exon start="91602" stop="91464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1256-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93638" stop="93607"/>
              <exon start="93528" stop="93464"/>
              <exon start="93261" stop="93162"/>
              <exon start="93024" stop="92983"/>
              <exon start="92876" stop="92835"/>
              <exon start="92558" stop="92359"/>
              <exon start="91602" stop="91464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93638" stop="93607"/>
              <exon start="93528" stop="93464"/>
              <exon start="93261" stop="93162"/>
              <exon start="93024" stop="92983"/>
              <exon start="92876" stop="92835"/>
              <exon start="92558" stop="92359"/>
              <exon start="91602" stop="91464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M737-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93633" stop="93607"/>
              <exon start="93528" stop="93464"/>
              <exon start="93261" stop="93162"/>
              <exon start="93024" stop="92983"/>
              <exon start="92876" stop="92835"/>
              <exon start="92558" stop="92359"/>
              <exon start="91602" stop="91407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93633" stop="93607"/>
              <exon start="93528" stop="93464"/>
              <exon start="93261" stop="93162"/>
              <exon start="93024" stop="92983"/>
              <exon start="92876" stop="92835"/>
              <exon start="92558" stop="92359"/>
              <exon start="91602" stop="91407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M737" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAATTGGATCAACCATCACTTGAACTTCAG : CTTGTAGAAAATAGCAACTACTCCAGATTAAGCAAGGAAATTTCCGAAAAAAGTCATCGATTAAG : GCAAATGAGGGGAGAAGAACTTCAAGGACTAAATATTGAAGAGTTGCAACAATTGGAGAGATCTCTTGAAACTGGATTGAGCCGCGTCATAGAGAGAAAG : GGTGATAAAATAATGAGAGAGATCAACCAACTCCAACAAAAG : GGTATGCATCTAATGGAAGAAAATGAAAAATTAAGGCAACAG : GTGATGGAGATATCTAATAATAATAATAATAATAATAATGGATATAGAGAGGCAGGAGTAGTAATATTTGAACCAGAAAATGGATTTAATAATAATAATAATGAAGATGGCCAATCATCTGAATCAGTAACAAATCCATGTAACTCAATTGATCCTCCTCCTCAAGATGATGATAGTTCTGATACTTCTCTCAAATTGGG : GCTACCTTACTCAGGCTGAAGAGATCAAAAGCAAGGTGTGGCTATTTTTGTATGTTATTAGAAGAAGGAGAAAAAAAAAAGTAACTACTAATTATTATAATTAATTAATGTCTGATTAATGTAAAAGCTAACCCCAAAAATTTCATATTATGTATGTAATTGGTGTATTAATCTCATGTATTCGTCTCCCATAGTT</gDNA_template>
            <first_frame> K  N  W  I  N  H  H  L  N  F  S :   L  *  K  I  A  T  T  P  D  *  A  R  K  F  P  K  K  V  I  D  *   : G  K  *  G  E  K  N  F  K  D  *  I  L  K  S  C  N  N  W  R  D  L  L  K  L  D  *  A  A  S  *  R  E  R :   V  I  K  *  *  E  R  S  T  N  S  N  K  R :   V  C  I  *  W  K  K  M  K  N  *  G  N  R :   *  W  R  Y  L  I  I  I  I  I  I  I  M  D  I  E  R  Q  E  *  *  Y  L  N  Q  K  M  D  L  I  I  I  I  M  K  M  A  N  H  L  N  Q  *  Q  I  H  V  T  Q  L  I  L  L  L  K  M  M  I  V  L  I  L  L  S  N  W   : G  Y  L  T  Q  A  E  E  I  K  S  K  V  W  L  F  L  Y  V  I  R  R  R  R  K  K  K  V  T  T  N  Y  Y  N  *  L  M  S  D  *  C  K  S  *  P  Q  K  F  H  I  M  Y  V  I  G  V  L  I  S  C  I  R  L  P  *   </first_frame>
            <second_frame>  K  I  G  S  T  I  T  *  T  S   : A  C  R  K  *  Q  L  L  Q  I  K  Q  G  N  F  R  K  K  S  S  I  K  :  A  N  E  G  R  R  T  S  R  T  K  Y  *  R  V  A  T  I  G  E  I  S  *  N  W  I  E  P  R  H  R  E  K   : G  *  *  N  N  E  R  D  Q  P  T  P  T  K   : G  Y  A  S  N  G  R  K  *  K  I  K  A  T   : G  D  G  D  I  *  *  *  *  *  *  *  *  W  I  *  R  G  R  S  S  N  I  *  T  R  K  W  I  *  *  *  *  *  *  R  W  P  I  I  *  I  S  N  K  S  M  *  L  N  *  S  S  S  S  R  *  *  *  F  *  Y  F  S  Q  I  G  :  A  T  L  L  R  L  K  R  S  K  A  R  C  G  Y  F  C  M  L  L  E  E  G  E  K  K  K  *  L  L  I  I  I  I  N  *  C  L  I  N  V  K  A  N  P  K  N  F  I  L  C  M  *  L  V  Y  *  S  H  V  F  V  S  H  S  </second_frame>
            <third_frame>   K  L  D  Q  P  S  L  E  L  Q  :  L  V  E  N  S  N  Y  S  R  L  S  K  E  I  S  E  K  S  H  R  L  R :   Q  M  R  G  E  E  L  Q  G  L  N  I  E  E  L  Q  Q  L  E  R  S  L  E  T  G  L  S  R  V  I  E  R  K  :  G  D  K  I  M  R  E  I  N  Q  L  Q  Q  K  :  G  M  H  L  M  E  E  N  E  K  L  R  Q  Q  :  V  M  E  I  S  N  N  N  N  N  N  N  N  G  Y  R  E  A  G  V  V  I  F  E  P  E  N  G  F  N  N  N  N  N  E  D  G  Q  S  S  E  S  V  T  N  P  C  N  S  I  D  P  P  P  Q  D  D  D  S  S  D  T  S  L  K  L  G :   L  P  Y  S  G  *  R  D  Q  K  Q  G  V  A  I  F  V  C  Y  *  K  K  E  K  K  K  S  N  Y  *  L  L  *  L  I  N  V  *  L  M  *  K  L  T  P  K  I  S  Y  Y  V  C  N  W  C  I  N  L  M  Y  S  S  P  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C11HBa0107K14.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93636" stop="93607"/>
                    <exon start="93528" stop="93464"/>
                    <exon start="93261" stop="93162"/>
                    <exon start="93024" stop="92983"/>
                    <exon start="92876" stop="92835"/>
                    <exon start="92558" stop="92359"/>
                    <exon start="91602" stop="91584"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEISNNNNNNNNGYREAGVVIFEPENGFNNNNNEDGQSSESVTNPCNSIDPPPQDDDSSDTSLKLGLPYSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 30 chains have been computed
$ 
$ memory statistics:
$ 17008 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2126 bytes was the average size of a spliced alignment
$ 9248 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2312 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 30 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 12:04:27
-->
