This directory contains genome assembly and annotation files for 13 Tomato accessions. The ".fasta" files are the genome assemblies while the ".gff" files are the annotations. The prefix of each file is the accession code.

These resources are pre-releases (beta) to the community. Please see our release statement for further information

Each file has its own version number. Assembly versions are denoted with the "MASx.x" syntax, while annotation versions are denoted with the "x.x_gene_models" syntax.

Assemblies and annotations are available for the following accessions:

Brandywine (SLL)
M82 (SLL)
Floradade (SLL)
EA00371 (SLL)
LYC1410 (SLL)
EA00990 (SLL)
PI303721 (SLL)
PI169588 (SLL)
BGV006865 (SLC)
BGV007989 (SLC)
BGV007931 (SLC)
PAS014479 (SP)
BGV006775 (SP)

SLL SLC - S. lyc. var. cerasiforme
SP - S. pimpinellifolium

This large dataset is being made available for research under Toronto , which outlines rules for pre-publication data sharing, under which we, the authors, reserve the right to publish the first analyses of the data, which includes descriptions of whole chromosome or genome-level analyses of genes, variants, gene families, repetitive elements, and comparisons with other organisms

For further information, please contact Zach B. Lippman (lippman@cshl.edu) or Michael C. Schatz (mschatz@cs.jhu.edu)