There are 3 different datasets of proteins for an unigene build.

+ Proteins predicted by longest6frame (a SGN script that translate the sequence in the 6 ORF and get the longest)

+ Proteins predicted by estscan (http://www.ch.embnet.org/software/ESTScan2.html)

+ Proteins preferred (for each unigene, compare both methods and get the longest protein)

For each dataset, exists two files (cds and protein).

Also is provided a version of the preferred protein dataset with annotations compatibles with ProteinPilot program.



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Report:
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Files:

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Version 3:
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	* cds sequences:
		- cds fasta file: tomato_species_cds_predicted_by_estscan.v3.fasta
		- number of sequences: 15185
		- total bases: 8624949
		- average sequences length: 567
		- maximum sequence length: 2790
		- minimum sequence length: 51
	* protein sequences:
		- protein fasta file: tomato_species_protein_predicted_by_estscan.v3.fasta
		- number of sequences: 15185
		- total aminoacids: 2874983
		- average sequences length: 189
		- maximum sequence length: 930
		- minimum sequence length: 17

	* cds sequences:
		- cds fasta file: tomato_species_cds_predicted_by_longest6frame.v3.fasta
		- number of sequences: 16913
		- total bases: 7785630
		- average sequences length: 460
		- maximum sequence length: 2388
		- minimum sequence length: 36
	* protein sequences:
		- protein fasta file: tomato_species_protein_predicted_by_longest6frame.v3.fasta
		- number of sequences: 16913
		- total aminoacids: 2589487
		- average sequences length: 153
		- maximum sequence length: 796
		- minimum sequence length: 11

	* cds sequences:
		- cds fasta file: tomato_species_cds_predicted_by_preferred.v3.fasta
		- number of sequences: 16046
		- total bases: 9029244
		- average sequences length: 562
		- maximum sequence length: 2790
		- minimum sequence length: 36
	* protein sequences:
		- protein fasta file: tomato_species_protein_predicted_by_preferred.v3.fasta
		- number of sequences: 16046
		- total aminoacids: 3007795
		- average sequences length: 187
		- maximum sequence length: 930
		- minimum sequence length: 11


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Version 2:
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	* cds sequences:
		- cds fasta file: Coffea_canephora_cds_predicted_by_estscan.v2.fasta
		- number of sequences: 12126
		- total bases: 7029897
		- average sequences length: 579
		- maximum sequence length: 2775
		- minimum sequence length: 51
	* protein sequences:
		- protein fasta file: Coffea_canephora_protein_predicted_by_estscan.v2.fasta
		- number of sequences: 12126
		- total aminoacids: 2343299
		- average sequences length: 193
		- maximum sequence length: 925
		- minimum sequence length: 17

	* cds sequences:
		- cds fasta file: Coffea_canephora_cds_predicted_by_longest6frame.v2.fasta
		- number of sequences: 16105
		- total bases: 7807119
		- average sequences length: 484
		- maximum sequence length: 2541
		- minimum sequence length: 51
	* protein sequences:
		- protein fasta file: Coffea_canephora_protein_predicted_by_longest6frame.v2.fasta
		- number of sequences: 16105
		- total aminoacids: 2597012
		- average sequences length: 161
		- maximum sequence length: 847
		- minimum sequence length: 17

	* cds sequences:
		- cds fasta file: Coffea_canephora_cds_predicted_by_preferred.v2.fasta
		- number of sequences: 15721
		- total bases: 8118714
		- average sequences length: 516
		- maximum sequence length: 2775
		- minimum sequence length: 54
	* protein sequences:
		- protein fasta file: Coffea_canephora_protein_predicted_by_preferred.v2.fasta
		- number of sequences: 15721
		- total aminoacids: 2703941
		- average sequences length: 171
		- maximum sequence length: 925
		- minimum sequence length: 17


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Version 1:
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	* cds sequences:
		- cds fasta file: Coffea_canephora_cds_predicted_by_estscan.v1.fasta
		- number of sequences: 12531
		- total bases: 6968484
		- average sequences length: 556
		- maximum sequence length: 2628
		- minimum sequence length: 51
	* protein sequences:
		- protein fasta file: Coffea_canephora_protein_predicted_by_estscan.v1.fasta
		- number of sequences: 12531
		- total aminoacids: 2311318
		- average sequences length: 184
		- maximum sequence length: 875
		- minimum sequence length: 15

	* cds sequences:
		- cds fasta file: Coffea_canephora_cds_predicted_by_preferred.fasta
		- number of sequences: 12507
		- total bases: 6958710
		- average sequences length: 556
		- maximum sequence length: 2628
		- minimum sequence length: 51
	* protein sequences:
		- protein fasta file: Coffea_canephora_protein_predicted_by_preferred.fasta
		- number of sequences: 12507
		- total aminoacids: 2308044
		- average sequences length: 184
		- maximum sequence length: 875
		- minimum sequence length: 15

	NOTE: There are not any cds/protein sequences for longest6frame method.

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