There are 3 different datasets of proteins for an unigene build. + Proteins predicted by longest6frame (a SGN script that translate the sequence in the 6 ORF and get the longest) + Proteins predicted by estscan (http://www.ch.embnet.org/software/ESTScan2.html) + Proteins preferred (for each unigene, compare both methods and get the longest protein) For each dataset, exists two files (cds and protein). Also is provided a version of the preferred protein dataset with annotations compatibles with ProteinPilot program. ---------------------------------------- Report: ---------------------------------------- Files: ---------------------------------------- Version 1: ---------------------------------------- * cds sequences: - cds fasta file: Nicotiana_benthamiana_cds_predicted_by_estscan.v1.fasta - number of sequences: 6114 - total bases: 1917900 - average sequences length: 313 - maximum sequence length: 5742 - minimum sequence length: 51 * protein sequences: - protein fasta file: Nicotiana_benthamiana_protein_predicted_by_estscan.v1.fasta - number of sequences: 6114 - total aminoacids: 639300 - average sequences length: 104 - maximum sequence length: 1914 - minimum sequence length: 17 * cds sequences: - cds fasta file: Nicotiana_benthamiana_cds_predicted_by_longest6frame.v1.fasta - number of sequences: 6860 - total bases: 1895475 - average sequences length: 276 - maximum sequence length: 4710 - minimum sequence length: 66 * protein sequences: - protein fasta file: Nicotiana_benthamiana_protein_predicted_by_longest6frame.v1.fasta - number of sequences: 6860 - total aminoacids: 628295 - average sequences length: 91 - maximum sequence length: 1570 - minimum sequence length: 22 * cds sequences: - cds fasta file: Nicotiana_benthamiana_cds_predicted_by_preferred.v1.fasta - number of sequences: 6300 - total bases: 2015961 - average sequences length: 319 - maximum sequence length: 5742 - minimum sequence length: 75 * protein sequences: - protein fasta file: Nicotiana_benthamiana_protein_predicted_by_preferred.v1.fasta - number of sequences: 6300 - total aminoacids: 670984 - average sequences length: 106 - maximum sequence length: 1914 - minimum sequence length: 24 ----------------------------------------