BLASTX 2.0.11 [Jan-20-2000] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi:15987770 (30,828 letters) Database: genpept 635,529 sequences; 197,985,706 total letters Score E Sequences producing significant alignments: (bits) Value gb|AAD22153.1|AF061282_6 (AF061282) polyprotein [Sorghum bicolor] 625 0.0 dbj|BAA95869.1| (AP002071) Similar to Sorghum bicolor 22 kDa kaf... 617 0.0 gb|AAD27547.1|AF111709_1 (AF111709) polyprotein [Oryza sativa su... 622 0.0 emb|CAA73042.1| (Y12432) polyprotein [Ananas comosus] 639 0.0 gb|AAD20658.1| (AC006570) putative retroelement pol polyprotein ... 628 0.0 gb|AAD22158.1|AF061282_11 (AF061282) polyprotein [Sorghum bicolor] 567 0.0 gb|AAD22339.1|AC006955_25 (AC006955) putative retroelement pol p... 629 0.0 gb|AAF67363.1| (AF262041) Hypothetical protein T32B20.f [Arabido... 561 0.0 gb|AAD38284.1|AC007789_10 (AC007789) putative polyprotein [Oryza... 613 0.0 gb|AAF18642.1|AC006228_13 (AC006228) F5J5.15 [Arabidopsis thaliana] 443 0.0 dbj|BAA81778.1| (AP000364) Similar to Transposon MAGGY gag and p... 610 e-172 emb|CAB78181.1| (AL161517) putative reverse-transcriptase-like p... 609 e-172 emb|CAB40024.1| (AL049523) putative reverse-transcriptase-like p... 609 e-172 gb|AAC26240.1| (AF077407) contains similarity to reverse transcr... 600 e-169 emb|CAB46045.1| (Z97342) retrotransposon like protein [Arabidops... 386 e-164 emb|CAB80961.1| (AL161545) retrotransposon like protein [Arabido... 386 e-164 dbj|BAA89559.1| (AP001072) Similar to polyprotein. (AF061282) [O... 575 e-162 gb|AAC69377.1| (AC005398) putative retroelement pol polyprotein ... 572 e-161 gb|AAD17358.1| (AF128395) contains similarity to reverse transcr... 471 e-147 gb|AAD37020.1|AC007730_2 (AC007730) putative retroelement pol po... 516 e-144 dbj|BAA78625.1| (AB028236) Pol (reverse transcriptase-RNase H-in... 326 e-142 dbj|BAA90795.1| (AP001168) Similar to 22 kDa kafirin cluster; Ty... 475 e-137 gb|AAD17356.1| (AF128395) contains similarity to retrovirus-rela... 350 e-126 emb|CAB77942.1| (AL161507) putative reverse transcriptase [Arabi... 350 e-126 dbj|BAA90794.1| (AP001168) Similar to 22 kDa kafirin cluster; Ty... 454 e-125 gb|AAD25146.1|AC006420_1 (AC006420) putative retroelement pol po... 257 e-115 gb|AAD13304.1| (AF119040) polyprotein [Lycopersicon esculentum] 407 e-111 gb|AAA35339.1| (M38526) Tf1 protein [Schizosaccharomyces pombe] 253 e-110 emb|CAB11682.1| (Z98978) retrotransposable element tf2 155 kd pr... 255 e-109 emb|CAA93236.1| (Z69240) retrotransposon Tf2p [Schizosaccharomyc... 255 e-109 emb|CAB83007.1| (AL162531) retrotransposble element; tf2 type tr... 255 e-109 emb|CAB57422.1| (AL121764) retrotransposable element tf2 155 kd ... 255 e-109 emb|CAB42363.1| (AL049769) retrotransposable element tf2 155 kd ... 255 e-109 emb|CAB60245.1| (AL023518) TF2 type transposable element [Schizo... 255 e-109 gb|AAA91215.1| (L10324) protease, reverse transcriptase, RNAse H... 255 e-109 emb|CAB58169.1| (AL035248) tf2-type transposon [Schizosaccharomy... 255 e-109 emb|CAB61532.1| (AL021815) retrotransposable element; tf2-type t... 252 e-108 emb|CAB64236.1| (AL035675) retrotransposable element; tf2-type t... 252 e-108 gb|AAD15321.1| (AC005142) putative reverse transcriptase [Arabid... 398 e-108 emb|CAB77850.1| (AL161497) putative reverse transcriptase [Arabi... 398 e-108 gb|AAF79348.1|AC007887_7 (AC007887) F15O4.13 [Arabidopsis thaliana] 397 e-108 dbj|BAA89466.1| (AB033235) gag-pol polyprotein [Oryza sativa] 390 e-106 gb|AAG12877.1|AC069473_8 (AC069473) gypsy/Ty-3 retroelement poly... 376 e-101 gb|AAG13508.1|AC068924_13 (AC068924) putative gag-pol polyprotei... 368 3e-099 gb|AAF18613.1|AC005171_1 (AC005171) putative retroelement integr... 362 1e-097 gb|AAF13073.1|AC011621_1 (AC011621) putative retroelement pol po... 356 8e-096 dbj|BAA75235.1| (AB014746) polyprotein [Hordeum vulgare] 342 1e-091 gb|AAC33526.2| (AF030881) pol polyprotein [Takifugu rubripes] 341 2e-091 dbj|BAA75236.1| (AB014750) polyprotein [Nicotiana tabacum] 337 4e-090 dbj|BAA75238.1| (AB014753) polyprotein [Morus bombycis] 336 1e-089 gb|AAA33420.1| (L35053) endonuclease [Pyricularia grisea] 333 9e-089 dbj|BAA75237.1| (AB014751) polyprotein [Ipomoea nil] 324 4e-086 gb|AAD24647.1|AC006220_3 (AC006220) putative retroelement pol po... 316 1e-083 gb|AAF79797.1|AC020646_20 (AC020646) T32E20.30 [Arabidopsis thal... 311 3e-082 gb|AAD39272.1|AC007203_4 (AC007203) Similar to retrotransposon p... 309 1e-081 emb|CAA77891.1| (Z11866) Reverse Transcriptase [Cladosporium ful... 307 6e-081 gb|AAF21678.1|AF051915_2 (AF051915) pol polyprotein [Cladosporiu... 307 6e-081 gb|AAC26251.1| (AF077408) contains similarity to reverse transcr... 224 1e-078 emb|CAB80807.1| (AL161498) putative transposon protein [Arabidop... 224 1e-078 emb|CAA80824.1| (Z24451) pol protein [Drosophila ananassae] 299 1e-078 gb|AAA88791.1| (L34658) pol polyprotein [Fusarium oxysporum] 298 3e-078 gb|AAF36671.1|AF222049_2 (AF222049) pol protein [Drosophila mela... 297 4e-078 gb|AAD39271.1|AC007203_3 (AC007203) Similar to reverse-transcri... 297 4e-078 dbj|BAA92703.1| (AB036885) reverse transcriptase [Tricholoma mag... 293 6e-077 gb|AAF48838.2| (AE003508) CG15054 gene product [Drosophila melan... 292 2e-076 emb|CAA25702.1| (X01472) ORF 2, pot. reverse transcriptase [Dros... 288 3e-075 dbj|BAA89272.1| (AB025309) Pol [Alternaria alternata] 287 5e-075 gb|AAC28743.1| (U60529) pol-like protein [Ceratitis capitata] 282 2e-073 gb|AAC33318.1| (AF056940) pol polyprotein [Drosophila virilis] 280 5e-073 emb|CAB57796.1| (X03431) ORF2 [Drosophila melanogaster] 278 2e-072 emb|CAA08807.1| (AJ009736) Pol protein [Drosophila melanogaster] 277 4e-072 dbj|BAA92704.1| (AB036886) reverse transcriptase [Tricholoma bak... 277 7e-072 gb|AAD27902.1|AC006267_7 (AC006267) putative polyprotein [Arabid... 268 2e-069 emb|CAB81146.1| (AL161510) putative polyprotein [Arabidopsis tha... 268 2e-069 gb|AAA50456.1| (U15406) gag, pol and env protein precursor [Caen... 268 3e-069 emb|CAA04050.1| (AJ000387) protease [Drosophila melanogaster] 267 5e-069 gb|AAF48015.1| (AE003485) CG2485 gene product [Drosophila melano... 266 1e-068 gb|AAA92249.1| (M32662) ORF B (bases 1850-5560) first start codo... 265 3e-068 emb|CAA86713.1| (Z46728) YI9910.15, incomplete TY3-2 orfB, len: ... 262 2e-067 gb|AAA35184.1| (M23367) has homology to retroviral pol genes; OR... 262 2e-067 gb|AAA98435.1| (M34549) POL3 [Saccharomyces cerevisiae] 261 4e-067 emb|CAA97117.1| (Z72895) TY3B [Saccharomyces cerevisiae] 261 4e-067 emb|CAA97115.1| (Z72894) TY3B [Saccharomyces cerevisiae] 261 4e-067 gb|AAG13423.1|AC051634_4 (AC051634) putative plant disease resis... 256 9e-066 gb|AAA21442.1| (M77661) putative pol polyprotein [Pyricularia gr... 254 4e-065 gb|AAB50148.1| (U89994) reverse transcriptase polyprotein [Droso... 253 8e-065 dbj|BAA77816.1| (AB027513) polyprotein [Tricholoma matsutake] 253 8e-065 emb|CAB39733.1| (AJ133521) protease, reverse transcriptase, ribo... 251 3e-064 emb|CAA65152.1| (X95908) orf [Drosophila melanogaster] 250 5e-064 emb|CAA27371.1| (X03734) reverse transcriptase-like enzyme (930 ... 249 1e-063 gb|AAA28600.1| (M38438) reverse transcriptase endonuclease [Dros... 248 3e-063 gb|AAA70219.1| (M12927) unknown protein [Drosophila melanogaster] 246 1e-062 gb|AAC82604.1| (AF033821) Prgag-pol [Drosophila melanogaster] 246 1e-062 emb|CAA51084.1| (X72390) ORF2 [Drosophila subobscura] 246 1e-062 gb|AAA28035.1| (L23646) homology with S. pombe protease; putativ... 243 8e-062 dbj|BAB01983.1| (AP002459) retroelement pol polyprotein-like [Ar... 241 3e-061 gb|AAF24529.1|AC007534_10 (AC007534) F7F22.15 [Arabidopsis thali... 240 1e-060 dbj|BAB10790.1| (AB028613) retroelement pol polyprotein-like [Ar... 238 2e-060 dbj|BAA92706.1| (AB036888) reverse transcriptase [Tricholoma sej... 233 9e-059 gb|AAG13430.1|AC051634_11 (AC051634) putative plant disease resi... 232 2e-058 gb|AAF24531.1|AC007534_12 (AC007534) F7F22.17 [Arabidopsis thali... 231 4e-058 emb|CAA27750.1| (X04132) ORF 4 (RNA2) [Drosophila melanogaster] 230 6e-058 dbj|BAA92424.1| (AB039862) pol (reverse transcriptase-RNase H) [... 228 4e-057 dbj|BAA92425.1| (AB039863) pol (reverse transcriptase-RNase H) [... 227 5e-057 dbj|BAB02630.1| (AP002054) retroelement pol polyprotein-like [Ar... 226 2e-056 emb|CAA32198.1| (X14037) polyprotein [Drosophila melanogaster] 224 5e-056 dbj|BAA22787.1| (AB007466) reverse transcriptase-like protein [V... 223 1e-055 dbj|BAA92705.1| (AB036887) reverse transcriptase [Tricholoma por... 217 5e-054 gb|AAC47271.1| (U09586) protease, reverse transcriptase and RNas... 212 2e-052 gb|AAD04177.1| (AF110183) putative integrase [Oryza sativa] 209 5e-052 dbj|BAA24352.1| (AB000279) Pol-like peptide [Alternaria alternata] 206 9e-051 dbj|BAB08213.2| (AP002539) Similar to Arabidopsis thaliana chrom... 206 1e-050 dbj|BAA96774.2| (AP002521) Similar to Arabidopsis thaliana chrom... 206 1e-050 dbj|BAB02140.1| (AP000411) contains similarity to reverse transc... 203 1e-049 gb|AAF00146.1|AF149813_2 (AF149813) retrotransposon del1-46 homo... 199 1e-048 gb|AAD17351.1| (AF128395) contains similarity to retrovirus-rela... 198 3e-048 emb|CAB77944.1| (AL161508) putative polyprotein [Arabidopsis tha... 198 3e-048 gb|AAF79809.1|AC020646_32 (AC020646) T32E20.9 [Arabidopsis thali... 196 1e-047 gb|AAG12922.1|AC022456_7 (AC022456) polyprotein, putative; 77260... 193 9e-047 dbj|BAA92707.1| (AB036889) reverse transcriptase [Tricholoma ful... 192 2e-046 emb|CAA81643.1| (Z27119) blastopia polyprotein [Drosophila melan... 187 6e-045 gb|AAF79618.1|AC027665_19 (AC027665) F5M15.26 [Arabidopsis thali... 185 3e-044 emb|CAA65970.1| (X97304) ORF V [Strawberry vein banding virus] 183 1e-043 emb|CAA39967.1| (X56645) ORF 2 [Drosophila virilis] 176 1e-041 gb|AAC69378.1| (AC005398) putative retroelement pol polyprotein ... 176 1e-041 gb|AAB42240.1| (U88169) similar to retrovirus-related POL polypr... 175 2e-041 emb|CAA12930.1| (AJ228325) reverse transcriptase [Ginkgo biloba] 175 3e-041 gb|AAC28237.1| (AF076274) contains similarity to reverse trancri... 175 3e-041 emb|CAB77891.1| (AL161499) putative transposon protein [Arabidop... 175 3e-041 emb|CAB06047.1| (Z83760) COS41.3 [Ciona intestinalis] 174 6e-041 gb|AAC48336.1| (AF017040) Pol [Dictyostelium discoideum] 174 6e-041 gb|AAC39021.1| (AF049230) Pol [Dictyostelium discoideum] 174 6e-041 gb|AAB71256.1| (AF026205) contains similarity to Pfam domains PF... 173 8e-041 gb|AAF18651.1|AC006570_1 (AC006570) putative retroelement pol po... 173 1e-040 gb|AAD27571.1|AF114171_12 (AF114171) polyprotein [Sorghum bicolor] 168 3e-039 gb|AAD19359.1| (AF098806) polyprotein [Sorghum bicolor] 168 3e-039 gb|AAD19780.1| (AC006528) putative retroelement pol polyprotein ... 165 2e-038 gb|AAD19756.1| (AC006413) putative Ty3-gypsy-like retroelement p... 163 9e-038 gb|AAD11615.1| (AF049110) prpol [Zea mays] 157 9e-036 gb|AAD22283.1|AC006920_7 (AC006920) putative retroelement pol po... 155 3e-035 gb|AAA62375.1| (M90542) reverse transcriptase [Cauliflower mosai... 154 5e-035 emb|CAA23460.1| (V00141) reading frame (V) [Cauliflower mosaic v... 153 1e-034 emb|CAA55974.1| (X79465) ORF V [Cauliflower mosaic virus] 153 1e-034 gb|AAD37341.1|AF140604_5 (AF140604) reverse transcriptase [Cauli... 152 3e-034 gb|AAD15474.1| (AC006067) putative retroelement pol polyprotein ... 151 5e-034 gb|AAA21736.1| (M90543) reverse transcriptase [Cauliflower mosai... 150 7e-034 gb|AAA46358.1| (M90541) reverse transcriptase [Cauliflower mosai... 149 2e-033 gb|AAA46350.1| (M10376) ORF5; putative [Cauliflower mosaic virus] 149 2e-033 dbj|BAA84805.1| (AP000559) Similar to ORF3 protein - rice tungro... 146 2e-032 dbj|BAA84458.1| (AB030283) GAG-POL precursor [Oryza sativa] 146 2e-032 dbj|BAA92689.1| (AB032718) protease and reverse transcriptase-li... 145 4e-032 emb|CAA29527.1| (X06166) ORF V (AA 1-666) [Figwort mosaic virus] 145 4e-032 dbj|BAB03352.1| (AP002486) Similar to Oryza sativa gypsy-type re... 140 8e-031 gb|AAG15480.1| (AF259976) polyprotein [Oryza sativa subsp. indica] 140 1e-030 dbj|BAA95881.1| (AP002071) Similar to Lycopersicon esculentum ha... 133 1e-028 dbj|BAB02143.1| (AP000411) retroelement pol polyprotein-like [Ar... 129 1e-027 gb|AAF08289.1|AF190123_3 (AF190123) polyprotein [tobacco vein-cl... 127 7e-027 gb|AAC02594.1| (AF045643) contains similarity to the retroviral ... 126 2e-026 dbj|BAA89659.1| (D10032) gag-pol precursor polyprotein [Baboon e... 125 2e-026 gb|AAA46810.1| (M26927) pol polyprotein [Gibbon ape leukemia virus] 125 4e-026 gb|AAB03094.1| (M65026) ORF3 [Rice tungro bacilliform virus] 122 2e-025 emb|CAA40997.1| (X57924) ORF P194 [Rice tungro bacilliform virus] 122 2e-025 emb|CAB38566.1| (X51929) polyprotein [Felis silvestris] 122 2e-025 gb|AAD30194.1|AF113831_3 (AF113831) polyprotein P194 [Rice tungr... 122 2e-025 gb|AAD30198.1|AF113832_3 (AF113832) polyprotein P194 [Rice tungr... 122 2e-025 gb|AAC27711.1| (AF076470) polyprotein [Rice tungro bacilliform v... 122 3e-025 dbj|BAA01607.1| (D10774) 194K polypeptide [Rice tungro bacillifo... 122 3e-025 gb|AAD30190.1|AF113830_3 (AF113830) polyprotein P194 [Rice tungr... 122 3e-025 emb|CAB53448.1| (AJ243730) polymerase polyprotein [Boulengerula ... 120 1e-024 emb|CAB42622.1| (AJ238747) putative polyprotein (aspartic protei... 119 2e-024 dbj|BAA92417.1| (AP001366) Similar to Sorghum bicolor Gypsy-Ty3 ... 118 3e-024 gb|AAC80264.1| (U60065) pol polyprotein [Gibbon ape leukemia virus] 118 3e-024 gb|AAC47491.1| (U29471) polypeptide [Nasonia vitripennis] 118 3e-024 gb|AAF15098.1| (AF151794) pol protein [Phascolarctos cinereus] 116 2e-023 gb|AAC47493.1| (U29472) polyprotein [Nasonia vitripennis] 115 2e-023 gb|AAC47494.1| (U29473) polyprotein [Nasonia vitripennis] 115 3e-023 emb|CAB53446.1| (AJ243732) polymerase polyprotein [Bitis arietans] 114 5e-023 gb|AAC47492.1| (U29470) polyprotein [Nasonia vitripennis] 114 7e-023 emb|CAB53471.1| (AJ243733) polymerase polyprotein [Lampetra fluv... 111 4e-022 dbj|BAA99536.1| (AP002484) putative gypsy-type retrotransposon R... 107 7e-021 emb|CAB38458.1| (AL035631) BACN32G13.a [Drosophila melanogaster] 107 9e-021 gb|AAF71196.1| (AF182203) pol protein integrase region [Pinus br... 106 1e-020 gb|AAD27548.1|AF111709_2 (AF111709) polyprotein [Oryza sativa su... 106 2e-020 dbj|BAA85207.1| (AP000570) ESTs C26347(C12145),AU078074(C12145) ... 105 4e-020 dbj|BAA84632.1| (AP000492) ESTs C26347(C12145),AU078074(C12145) ... 105 4e-020 gb|AAC31805.1| (AF053745) pol polyprotein [Mus dunni endogenous ... 104 5e-020 gb|AAC82568.1| (AF033811) Pr180 [Moloney murine leukemia virus] 104 6e-020 gb|AAB64160.1| (AF010170) Pol [synthetic construct] 104 6e-020 gb|AAC98548.1| (AF019230) pol polypeptide [Murine leukemia virus] 104 8e-020 gb|AAA93092.1| (M18247) gag-pol precursor polyprotein gPr80 [Fel... 103 1e-019 gb|AAC31801.1| (AF052723) gag-pol precursor polyprotein gPr80 [F... 102 2e-019 gb|AAA92679.1| (U13766) gag-pol polyprotein [Murine leukemia virus] 101 4e-019 gb|AAF71149.1| (AF152539) pol protein integrase region [Abies alba] 101 4e-019 gb|AAA79247.1| (M87550) reverse transcriptase [Murine leukemia v... 101 7e-019 gb|AAF71147.1| (AF152537) pol protein integrase region [Abies alba] 101 7e-019 gb|AAA46477.1| (M93134) pol protein [Friend murine leukemia virus] 101 7e-019 emb|CAA77477.1| (Z11128) RNA-dependent DNA polymerase [Friend mu... 101 7e-019 dbj|BAA22064.1| (D88386) gag-pol polyprotein (precursor protein)... 101 7e-019 gb|AAD55051.1| (AF169256) putative gag-pol polyprotein [Murine l... 101 7e-019 gb|AAC46707.1| (U23171) Contains similarity to Pfam domain: PF00... 101 7e-019 gb|AAF71195.1| (AF182201) pol protein integrase region [Pinus br... 100 9e-019 gb|AAB03091.1| (J01998) gag-pol polyprotein (tag amber codon at ... 100 9e-019 gb|AAB06450.1| (U63133) Gag-Pol polyprotein [Mus musculus] 100 9e-019 gb|AAF71145.1| (AF152535) pol protein integrase region [Abies alba] 100 1e-018 gb|AAF71197.1| (AF182205) pol protein integrase region [Pinus br... 99 2e-018 gb|AAD34536.1| (AF136491) polymerase [Murine leukemia virus] 99 2e-018 gb|AAF71151.1| (AF152541) pol protein integrase region [Picea ab... 99 4e-018 gb|AAF71148.1| (AF152538) pol protein integrase region [Abies alba] 99 4e-018 gb|AAB86912.1| (U94692) Pol [Rauscher murine leukemia virus] 98 5e-018 emb|CAB65340.1| (AJ133817) viral polypeptide [porcine endogenous... 96 2e-017 emb|CAB65339.1| (AJ133816) viral polypeptide [porcine endogenous... 96 2e-017 emb|CAB65341.1| (AJ133818) viral polyprotein [porcine endogenous... 96 2e-017 emb|CAA76582.1| (Y17013) pol [porcine endogenous retrovirus] 96 2e-017 emb|CAB39348.1| (A66553) REVERSE TRANSCRIPTASE [porcine endogeno... 96 3e-017 gb|AAC59310.1| (AF014792) pol polyprotein [walleye epidermal hyp... 95 4e-017 gb|AAF71150.1| (AF152540) pol protein integrase region [Abies alba] 95 5e-017 gb|AAD23707.1|AC006918_6 (AC006918) putative retroelement pol po... 95 5e-017 gb|AAD30054.1| (AF133052) pol polyprotein [walleye epidermal hyp... 95 5e-017 gb|AAC59311.1| (AF014793) pol polyprotein [walleye epidermal hyp... 95 5e-017 gb|AAD30048.1|AF133051_3 (AF133051) pol polyprotein [walleye epi... 94 9e-017 emb|CAA11581.1| (AJ223851) pol gene [Feline foamy virus] 94 9e-017 emb|CAA70075.1| (Y08851) pol [Feline foamy virus] 94 9e-017 gb|AAF71153.1| (AF152543) pol protein integrase region [Picea ab... 94 9e-017 gb|AAC58531.1| (U85043) reverse transcriptase [feline syncytial ... 93 2e-016 gb|AAB38321.1| (U78765) FeSFV polymerase [feline syncytial virus] 93 2e-016 gb|AAF71152.1| (AF152542) pol protein integrase region [Picea ab... 92 3e-016 gb|AAC82611.1| (AF033822) Pr gag-pro-pol [Walleye dermal sarcoma... 91 8e-016 emb|CAB53450.1| (AJ243731) polymerase polyprotein [Crocodylus ni... 90 2e-015 gb|AAD25683.2|AC006194_1 (AC006194) putative retroelement pol po... 89 2e-015 gb|AAC47272.1| (U09586) integrase [Tribolium castaneum] 89 2e-015 dbj|BAB08227.1| (AB011483) MADS-box protein-like [Arabidopsis th... 87 1e-014 gb|AAA47796.1| (M74895) pol polyprotein [Simian foamy virus type 3] 87 2e-014 gb|AAA19978.1| (U04327) N-terminus uncertain [Simian foamy virus] 85 6e-014 gb|AAF64414.1|AF201902_2 (AF201902) Pol [equine foamy virus] 84 1e-013 dbj|BAA99310.1| (AP000397) orf764 [Beta vulgaris var. altissima] 84 1e-013 emb|CAB53560.1| (AJ006557) reverse transcriptase [Anopheles fune... 83 2e-013 gb|AAB68770.1| (U94514) pol polyprotein [bovine syncytial virus] 83 2e-013 gb|AAD23028.1|AC006585_23 (AC006585) putative MADS-box protein [... 83 2e-013 gb|AAA46122.1| (M54978) pol protein [Human spumaretrovirus] 82 5e-013 gb|AAB48112.1| (U21247) pro-pol protein [Human spumaretrovirus] 82 5e-013 emb|CAA68999.1| (Y07724) pol [Human foamy virus] 82 5e-013 emb|CAA68997.1| (Y07723) pol [Human foamy virus] 82 5e-013 emb|CAA69003.1| (Y07725) pol [Human foamy virus] 82 5e-013 gb|AAD03367.1| (AC005957) putative retroelement pol polyprotein ... 81 9e-013 gb|AAC27145.1| (AC004512) Contains similarity to gb|L46397 MADS ... 76 2e-011 dbj|BAB00646.1| (AP002804) EST C72786(E2258) corresponds to a re... 74 1e-010 dbj|BAA87844.1| (AP000815) EST C72786(E2258) corresponds to a re... 74 1e-010 emb|CAB16834.1| (Z99708) putative MADS-box protein [Arabidopsis ... 73 2e-010 emb|CAB80325.1| (AL161589) putative MADS-box protein [Arabidopsi... 73 2e-010 emb|CAA67548.1| (X99085) integrase [Ascobolus immersus] 71 7e-010 emb|CAA73304.1| (Y12776) MADS-box protein [Arabidopsis thaliana] 71 1e-009 gb|AAF81311.1|AC061957_7 (AC061957) Contains strong similarity (... 71 1e-009 dbj|BAA92690.1| (AB032718) pol polyprotein [Bombyx mori] 70 2e-009 gb|AAG12954.1|AC036106_6 (AC036106) SRF-type transcription facto... 68 6e-009 gb|AAC16767.1| (AF038601) pol protein [Sus scrofa] 66 2e-008 gb|AAD20432.1| (AC006446) putative retroelement pol polyprotein ... 65 4e-008 gb|AAF69808.1| (AF180924) pol protein [Picea abies] 62 4e-007 gb|AAC26702.1| (AC004077) MADS-box protein (AGL29) [Arabidopsis ... 62 4e-007 gb|AAF69810.1| (AF180926) pol protein [Picea abies] 61 6e-007 emb|CAA61544.1| (X89270) pol protein [Human T-cell lymphotropic ... 61 6e-007 emb|CAA56791.1| (X80830) integrase [Nicotiana tabacum] 61 1e-006 gb|AAG09919.1|AF112149_1 (AF112149) MADS box protein 2 [Zea mays] 58 7e-006 gb|AAC24320.1| (U95609) MADS-box protein [Ceratopteris richardii] 58 7e-006 dbj|BAA25245.1| (D89670) transcription factor [Ceratopteris rich... 58 7e-006 emb|CAA71739.1| (Y10750) DEFH125 protein [Antirrhinum majus] 58 7e-006 gb|AAF58872.1| (AE003831) Mef2 gene product [Drosophila melanoga... 57 2e-005 emb|CAA58508.1| (X83527) myocyte enhancer-binding factor 2 [Dros... 57 2e-005 gb|AAF06817.1|U19493_1 (U19493) MADS domain transcription factor... 57 2e-005 gb|AAA20463.1| (U07422) myocyte-specific enhancer factor 2 [Dros... 57 2e-005 gb|AAA19957.1| (U03292) MADS box gene [Drosophila melanogaster] 57 2e-005 gb|AAB03807.1| (U22681) AGL15 type 2 [Brassica napus] 56 3e-005 emb|CAB80459.1| (AL161592) MADS-box protein AGL17-like protein [... 56 3e-005 emb|CAB37534.1| (AL035538) MADS-box protein AGL17-like protein [... 56 3e-005 emb|CAA44979.1| (X63381) serum response factor-related protein [... 55 4e-005 emb|CAA48517.1| (X68505) myocyte-specific enhancer factor 2 (MEF... 55 4e-005 gb|AAB17196.1| (U49020) myocyte-specific enhancer factor 2A, C4 ... 55 4e-005 gb|AAG09811.1| (AF275345) MADS-box transcription factor jointles... 55 4e-005 emb|CAA48635.1| (X68675) fbp6 [Petunia x hybrida] 55 4e-005 gb|AAA68001.1| (L33973) agamous protein [Petunia integrifolia] 55 4e-005 gb|AAF18375.1|AF158542_1 (AF158542) MADS-box transcription facto... 55 5e-005 emb|CAB61037.1| (Z79758) Similarity to C.elegans MEF-2 protein (... 55 5e-005 gb|AAA79337.1| (U36199) CeMEF-2 [Caenorhabditis elegans] 55 5e-005 gb|AAA79336.1| (U36198) CeMef-2 [Caenorhabditis elegans] 55 5e-005 gb|AAC05226.1| (U66569) myocyte enhancer factor 2C MEF2C [Danio ... 55 5e-005 gb|AAF26803.1|AC016829_27 (AC016829) putative SRF-type transcrip... 55 5e-005 gb|AAF18374.1|AF158541_1 (AF158541) MADS-box transcription facto... 55 5e-005 dbj|BAA33568.1| (AB012885) MEF2C [Cyprinus carpio] 55 5e-005 dbj|BAA08722.1| (D49970) As-MEF2 [Halocynthia roretzi] 55 6e-005 emb|CAA64269.1| (X94576) ORF III [Dioscorea alata bacilliform vi... 55 6e-005 gb|AAC05225.1| (U66568) myocyte enhancer factor 2A MEF2A [Danio ... 55 6e-005 gb|AAA74030.1| (U30823) myocyte enhancer factor-2A [Mus musculus... 55 6e-005 dbj|BAA33567.1| (AB012884) MEF2A [Cyprinus carpio] 55 6e-005 emb|CAB43712.1| (AJ010072) MEF2A protein [Gallus gallus] 55 6e-005 gb|AAB17195.1| (U49020) myocyte-specific enhancer factor 2A, C9 ... 55 6e-005 gb|AAC24319.1| (U95608) MADS-box protein [Ceratopteris richardii] 55 6e-005 emb|CAA69276.1| (Y08014) homeotic protein [Ceratopteris richardii] 55 6e-005 emb|CAA76175.1| (Y16312) serum response factor-related protein [... 55 6e-005 emb|CAB44452.2| (AJ132212) putative MADS domain transcription fa... 54 8e-005 gb|AAD15533.1| (AC006217) putative retroelement pol polyprotein ... 54 8e-005 emb|CAA79530.1| (Z19123) SRF-related protein [Xenopus laevis] 53 1e-004 gb|AAC24493.1| (U91416) CMADS2 [Ceratopteris richardii] 53 1e-004 gb|AAC15419.1| (AF042068) MADS-box protein NMH 7 [Medicago sativa] 53 1e-004 emb|CAB68129.1| (AL137080) MADS-box transcription factor-like pr... 53 1e-004 gb|AAF04972.1|AF091458_1 (AF091458) MADS box transcription facto... 53 1e-004 emb|CAB56800.1| (AJ011675) MADS box protein, MADS28 [Oryza sativa] 53 1e-004 emb|CAA48725.1| (X68831) globosa [Antirrhinum majus] 53 1e-004 gb|AAD25638.1|AC007210_3 (AC007210) putative MADS-box protein AN... 53 1e-004 emb|CAB09793.1| (Z97057) ANR1 , MADS-box protein [Arabidopsis th... 53 1e-004 gb|AAB25838.1| (S57212) myocyte enhancer-binding factor 2, MEF2 ... 53 1e-004 gb|AAA59578.1| (L08895) enhancer binding factor 2C [Homo sapiens] 53 1e-004 gb|AAB52709.1| (L37526) MADS box protein [Oryza sativa] 53 1e-004 gb|AAF16766.1|AC010155_19 (AC010155) F3M18.10 [Arabidopsis thali... 53 2e-004 gb|AAD02250.1| (AF043255) MADS box protein 26 [Cucumis sativus] 53 2e-004 gb|AAD51903.1| (AF115814) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51902.1| (AF115813) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51901.1| (AF115812) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51900.1| (AF115811) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51899.1| (AF115810) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51898.1| (AF115809) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51895.1| (AF115806) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51894.1| (AF115805) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51893.1| (AF115804) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51892.1| (AF115803) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51891.1| (AF115802) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51890.1| (AF115801) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51889.1| (AF115800) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51888.1| (AF115799) floral homeotic protein AP3 [Arabidops... 53 2e-004 gb|AAD51887.1| (AF115798) floral homeotic protein AP3 [Arabidops... 53 2e-004 emb|CAB81799.1| (AL132971) floral homeotic protein APETALA3 (AP3... 53 2e-004 dbj|BAA04665.1| (D21125) APETALA3 [Arabidopsis thaliana] 53 2e-004 gb|AAA32740.1| (M86357) APETELA3 [Arabidopsis thaliana] 53 2e-004 emb|CAB97355.1| (AJ249147) MADS-box protein 9 [Hordeum vulgare] 53 2e-004 emb|CAA86585.1| (Z46612) agamous [Panax ginseng] 53 2e-004 gb|AAF28894.1|AF124814_1 (AF124814) APETALA3 [Brassica napus] 53 2e-004 gb|AAB08879.1| (U67455) homeotic protein boi2AP3 [Brassica olera... 53 2e-004 emb|CAA56656.1| (X80489) SLM2 [Silene latifolia] 53 2e-004 gb|AAA33731.1| (M91190) transcription factor [Petunia x hybrida] 53 2e-004 emb|CAA02244.1| (A36587) unnamed protein product [Petunia x hybr... 53 2e-004 gb|AAC05227.1| (U66570) myocyte enhancer factor 2D MEF2D [Danio ... 53 2e-004 gb|AAA65654.1| (U22665) AGL15 [Brassica napus] 53 2e-004 gb|AAB08877.1| (U67453) homeotic protein boi1AP3 [Brassica olera... 53 2e-004 gb|AAC49817.1| (U78892) MADS box protein [Oryza sativa] 53 2e-004 emb|CAB42988.1| (AJ239057) farinelli protein [Antirrhinum majus] 53 2e-004 emb|CAA48142.1| (X67959) NTGLOBOSA [Nicotiana tabacum] 52 3e-004 dbj|BAA90963.1| (AK000132) unnamed protein product [Homo sapiens] 52 3e-004 gb|AAD15571.1| (AC006340) putative MADS-box protein AGL17 [Arabi... 52 3e-004 dbj|BAA81880.1| (AB003322) MADS box-like protein [Oryza sativa] 52 3e-004 gb|AAD51896.1| (AF115807) floral homeotic protein AP3 [Arabidops... 52 3e-004 gb|AAD01743.1| (AF022378) agamous-like putative transcription fa... 52 3e-004 emb|CAA66388.1| (X97801) putative transcription factor [Cucumis ... 52 3e-004 gb|AAD22494.2|AF134115_1 (AF134115) PISTILLATA protein homolog H... 52 3e-004 gb|AAA99964.1| (L37528) MADS box protein [Oryza sativa] 52 3e-004 emb|CAA05282.1| (AJ002238) qMEF2D protein [Coturnix japonica] 52 4e-004 gb|AAB94006.1| (AF008652) MADS transcriptional factor; STMADS11 ... 52 4e-004 gb|AAB29973.1| (S68893) myocyte-specific enhancer-binding factor... 52 4e-004 gb|AAA93194.1| (L16794) transcription factor [Homo sapiens] 52 4e-004 emb|CAA79531.1| (Z19124) SRF-related protein [Xenopus laevis] 52 4e-004 emb|CAA06531.1| (AJ005425) MEF2D protein [Rattus norvegicus] 52 4e-004 emb|CAA77892.1| (Z11866) env homologue [Cladosporium fulvum] 52 4e-004 gb|AAB29974.1| (S68895) myocyte-specific enhancer-binding factor... 52 4e-004 gb|AAD38119.1| (AF103903) AGAMOUS homolog [Liquidambar styraciflua] 52 4e-004 emb|CAA08800.1| (AJ009722) MADS-box protein, GAGA1 [Gerbera hybr... 52 4e-004 gb|AAB86982.1| (AC002126) XMEF2 [Homo sapiens] 52 5e-004 emb|CAA48515.1| (X68502) myocyte-specific enhancer factor 2 (XM... 52 5e-004 emb|CAA44978.1| (X63380) serum response factor-related protein [... 52 5e-004 gb|AAA39757.1| (M19005) pol protein [Mus musculus] 52 5e-004 gb|AAC78283.1| (AF029976) MADS box protein [Eucalyptus grandis] 52 5e-004 gb|AAB81103.1| (L81162) homologue; putative [Zea mays] 52 5e-004 emb|CAC07356.1| (AX006357) FBP15 [Petunia x hybrida] 52 5e-004 emb|CAA56655.1| (X80488) SLM1 [Silene latifolia] 52 5e-004 gb|AAC08528.1| (AF035438) CUM1 [Cucumis sativus] 52 5e-004 gb|AAD01744.1| (AF022379) agamous-like putative transcription fa... 52 5e-004 emb|CAA08801.1| (AJ009723) MADS-box protein, GAGA2 [Gerbera hybr... 52 5e-004 dbj|BAA97222.1| (AB025623) MADS box transcription factor-like [A... 51 7e-004 gb|AAF79890.1|AC026479_2 (AC026479) Contains similarity to MADS-... 51 7e-004 gb|AAB48660.1| (L41727) MADS-box protein [Medicago sativa] 51 7e-004 gb|AAF45363.1| (AE003176) CG12555 gene product [Drosophila melan... 51 7e-004 gb|AAC06237.1| (AF052570) AGAMOUS homolog [Populus balsamifera s... 51 7e-004 gb|AAB50180.1| (U31994) MADS box protein [Oryza sativa] 51 7e-004 emb|CAA75241.1| (Y15008) M79 protein [Oryza sativa] 51 7e-004 emb|CAA57073.1| (X81199) ZMM1 [Zea mays] 51 7e-004 gb|AAA85871.1| (U31522) MADS box protein [Zea mays] 51 7e-004 gb|AAF27155.1|AC016529_18 (AC016529) putative SRF-type transcrip... 51 0.001 dbj|BAA81881.1| (AB003323) MADS box-like protein [Oryza sativa] 51 0.001 emb|CAA08804.1| (AJ009726) MADS-box protein, GGLO1 [Gerbera hybr... 51 0.001 emb|CAA56504.1| (X80206) ZAG2 [Zea mays] 51 0.001 gb|AAA85870.1| (U31521) MADS box protein [Zea mays] 51 0.001 emb|CAB44455.1| (AJ132215) putative MADS domain transcription fa... 51 0.001 gb|AAD19872.1| (AF077760) MADS box protein [Oryza sativa] 50 0.001 emb|CAB44459.1| (AJ132219) putative MADS domain transcription fa... 50 0.001 emb|CAA49567.1| (X69946) GP (green petal) [Petunia x hybrida] 50 0.001 dbj|BAB10332.1| (AB026633) MADS box transcription factors-like p... 50 0.001 gb|AAB51377.1| (U91964) MADS-box protein [Medicago sativa] 50 0.001 emb|CAB44448.1| (AJ132208) putative MADS domain transcription fa... 50 0.001 gb|AAF28863.1|AF120097_1 (AF120097) DEF/GLO-like protein [Pinus ... 50 0.001 gb|AAF16765.1|AC010155_18 (AC010155) F3M18.11 [Arabidopsis thali... 50 0.001 emb|CAA64266.1| (X94575) ORF III [Dioscorea alata bacilliform vi... 50 0.001 gb|AAF73941.1|AF230712_1 (AF230712) MADS box containing protein ... 50 0.001 gb|AAD21741.1| (AC006931) floral homeodomain transcription facto... 50 0.001 emb|CAB78898.1| (AL161549) floral homeotic protein agamous [Arab... 50 0.001 emb|CAA16753.1| (AL021711) floral homeotic protein agamous [Arab... 50 0.001 gb|AAA80306.1| (U28484) MADS box regulatory protein [Rumex acetosa] 50 0.001 emb|CAA61480.1| (X89107) MADS box regulatory protein [Rumex acet... 50 0.001 emb|CAA57311.1| (X81651) floral binding protein number 7 [Petuni... 50 0.001 emb|CAA51417.1| (X72912) pMADS3 [Petunia x hybrida] 50 0.001 gb|AAA17033.1| (L23925) NAG1 [Nicotiana tabacum] 50 0.001 gb|AAC06238.1| (AF052571) AGAMOUS homolog [Populus balsamifera s... 50 0.001 gb|AAA32735.1| (M55553) transcription factor [Arabidopsis thaliana] 50 0.001 emb|CAA37642.1| (X53579) agamous gene product (AA 1-285) [Arabid... 50 0.001 emb|CAA43170.1| (X60758) TDR5 [Lycopersicon esculentum] 50 0.002 emb|CAA43010.1| (X60480) TDR5 [Lycopersicon esculentum] 50 0.002 gb|AAC49816.1| (U78891) MADS box protein [Oryza sativa] 50 0.002 gb|AAC08529.1| (AF035439) CUM10 [Cucumis sativus] 50 0.002 emb|CAA04325.1| (AJ000763) MADS-box protein [Malus domestica] 50 0.002 gb|AAD01742.1| (AF022377) agamous-like putative transcription fa... 50 0.002 emb|CAB97350.1| (AJ249142) MADS-box protein 1-2 [Hordeum vulgare] 50 0.002 emb|CAB97349.1| (AJ249141) MADS box protein 1 [Hordeum vulgare] 50 0.002 dbj|BAA90743.1| (AB025643) MADS-box protein [Rosa rugosa] 50 0.002 dbj|BAA85630.1| (AB022665) GpMADS3 [Gnetum parvifolium] 50 0.002 gb|AAA32985.1| (M99415) BAG1 [Brassica napus] 50 0.002 gb|AAA34197.1| (L26295) TAG1 [Lycopersicon esculentum] 50 0.002 emb|CAB44449.1| (AJ132209) putative MADS domain transcription fa... 49 0.003 gb|AAC97157.1| (U69482) AGAMOUS-like MADS-box transcriptional fa... 49 0.003 gb|AAD09342.1| (AF023615) MADS box protein [Pinus radiata] 49 0.003 gb|AAD01266.1| (AF006210) MADS box transcription factor [Pinus r... 49 0.003 gb|AAC97158.1| (U69483) AGAMOUS-like MADS-box transcriptional fa... 49 0.003 gb|AAC97146.1| (U46582) AGAMOUS-like MADS-box transcription fact... 49 0.003 emb|CAA55867.1| (X79280) DAL2 protein [Picea abies] 49 0.003 gb|AAD03486.1| (AF027376) MADS1 [Corylus avellana] 49 0.003 emb|CAB95649.1| (AJ252071) MADS box protein [Betula pendula] 49 0.003 emb|CAB88295.1| (AL353032) shatterproof 1 (SHP1)/ agamous-like 1... 49 0.003 gb|AAA32730.1| (M55550) transcription factor [Arabidopsis thaliana] 49 0.003 emb|CAA86024.1| (Z37968) BOAP1 [Brassica oleracea] 49 0.003 emb|CAA65288.1| (X96428) MADS-box protein [Nicotiana tabacum] 49 0.004 emb|CAB95648.1| (AJ252070) MADS box protein [Betula pendula] 49 0.004 gb|AAB94005.1| (AF008651) MADS transcriptional factor; STMADS16 ... 49 0.004 gb|AAD00025.1| (U43372) AGAMOUS protein [Rosa hybrid cultivar] 49 0.004 dbj|BAA90744.1| (AB025644) MADS-box protein [Rosa rugosa] 49 0.004 dbj|BAA90746.1| (AB025646) MADS-box protein [Rosa rugosa] 49 0.004 gb|AAC06173.1| (AC003680) MADS-box protein (AGL6) [Arabidopsis t... 49 0.004 gb|AAA79328.1| (M55554) transcription factor [Arabidopsis thaliana] 49 0.004 gb|AAB50187.1| (U49734) MADS box transcription factor SbMADS1 [S... 49 0.004 gb|AAF22455.1| (AF060880) MADS box protein [Paulownia kawakamii] 48 0.005 gb|AAF66690.1|AF144623_1 (AF144623) MADS-box transcription facto... 48 0.005 dbj|BAA97510.1| (AB026633) MADS box transcription factor-like [A... 48 0.005 gb|AAA80304.1| (U28482) MADS box regulatory protein [Rumex acetosa] 48 0.005 emb|CAA61484.1| (X89113) MADS box regulatory protein [Rumex acet... 48 0.005 gb|AAB25101.1| (S53900) promotes sex organ development=ple [Anti... 48 0.005 gb|AAB80808.1| (U90346) putative MADS box transcription factor P... 48 0.006 dbj|BAB11255.1| (AB010074) MADS box transcription factor-like pr... 48 0.006 emb|CAA47846.1| (X67511) deficiens analogue [Solanum tuberosum] 48 0.006 emb|CAA47845.1| (X67508) deficiens analogue [Solanum tuberosum] 48 0.006 emb|CAB44457.1| (AJ132217) putative MADS domain transcription fa... 48 0.006 dbj|BAA33458.1| (AB007505) MADS box transcription factor [Tritic... 48 0.006 gb|AAF21900.1|AF109153_1 (AF109153) MADS box transcription facto... 48 0.006 gb|AAC49080.1| (U20182) MADS-box protein AGL11 [Arabidopsis thal... 48 0.006 emb|CAB78119.1| (AL161516) MADS-box protein AGL11 [Arabidopsis t... 48 0.006 emb|CAB39620.1| (AL049481) MADS-box protein AGL11 [Arabidopsis t... 48 0.006 gb|AAB64250.1| (U78782) MADS box protein [Oryza sativa] 48 0.006 gb|AAD09207.1| (U42400) putative MADS-box family transcription f... 48 0.006 gb|AAB00078.1| (L46397) MADS box protein [Zea mays] 48 0.006 emb|CAA70822.1| (Y09611) MADS-box family transcription factor [P... 48 0.006 gb|AAB08875.1| (U67451) homeotic protein boi1AP1 [Brassica olera... 48 0.006 dbj|BAA94287.1| (AB031035) pMADS4 [Petunia x hybrida] 48 0.006 gb|AAC97159.1| (U69484) AGAMOUS-like MADS-box transcriptional fa... 48 0.006 gb|AAG09136.1|AF150932_1 (AF150932) MADS-domain protein PPM1 [Ph... 48 0.008 gb|AAG09135.1|AF150931_1 (AF150931) MADS-domain protein PPM1 [Ph... 48 0.008 emb|CAA70485.1| (Y09302) putative MADS-domain transcription fact... 48 0.008 gb|AAF73933.1|AF230704_1 (AF230704) MADS box transcription facto... 48 0.008 gb|AAF13261.1|AF198175_1 (AF198175) MADS box protein DOMADS2 [De... 48 0.008 gb|AAD22365.1|AC006592_22 (AC006592) putative MADS-box protein [... 48 0.008 emb|CAB79250.1| (AL161558) putative MADS Box / AGL protein [Arab... 48 0.008 emb|CAA19810.1| (AL031018) putative MADS Box / AGL protein [Arab... 48 0.008 emb|CAA08802.1| (AJ009724) MADs-box protein, GDEF1 [Gerbera hybr... 48 0.008 gb|AAD38370.1| (AF141966) MADS-box protein FDRMADS1 [Oryza sativa] 48 0.008 gb|AAB41525.1| (U25695) transcription factor SaMADS B [Sinapis a... 48 0.008 gb|AAA02933.1| (L18924) homologue of Arabidopsis gene AGAMOUS [Z... 48 0.008 gb|AAD22493.2|AF134114_1 (AF134114) PISTILLATA protein homolog H... 48 0.008 gb|AAC05723.1| (L37527) MADS box protein [Oryza sativa] 48 0.008 emb|CAA36268.1| (X52023) deficiens [Antirrhinum majus] 47 0.011 emb|CAA44629.1| (X62810) DEF A protein [Antirrhinum majus] 47 0.011 gb|AAB53193.1| (U32109) MADS box protein [Oryza sativa] 47 0.011 gb|AAC83170.1| (U78948) MADS-box protein 2 [Malus x domestica] 47 0.011 emb|CAA69916.1| (Y08626) MADS D [Sinapis alba] 47 0.011 gb|AAC00586.1| (AC002396) AGL9 [Arabidopsis thaliana] 47 0.011 gb|AAB67832.1| (AF015552) AGL9 [Arabidopsis thaliana] 47 0.011 gb|AAB58907.1| (U76726) MADS-box protein [Pinus radiata] 47 0.011 emb|CAA56864.1| (X80902) dal1 [Picea abies] 47 0.011 gb|AAC84133.1| (AF101420) MADS box protein [Cichorium intybus] 47 0.014 gb|AAF66998.1| (AF139665) FDRMADS7 [Oryza sativa] 47 0.014 emb|CAA64742.1| (X95468) MADS-box gene [Antirrhinum majus] 47 0.014 gb|AAD45814.1|AF168468_1 (AF168468) agamous protein [Fragaria x ... 47 0.014 dbj|BAA90745.1| (AB025645) MADS-box protein [Rosa rugosa] 47 0.014 gb|AAB00079.1| (L46398) MADS box protein [Zea mays] 47 0.014 emb|CAA57233.1| (X81480) Saap1 [Sinapis alba] 47 0.014 gb|AAD51422.1|U78949_1 (U78949) MADS-box protein 3 [Malus x dome... 47 0.014 emb|CAA04323.1| (AJ000761) MADS-box protein [Malus domestica] 47 0.014 gb|AAA97403.1| (U33473) AGL8 [Arabidopsis thaliana] 47 0.014 dbj|BAB10640.1| (AB008269) floral homeotic protein AGL8 [Arabido... 47 0.014 emb|CAA43172.1| (X60760) TDR8 [Lycopersicon esculentum] 46 0.018 >gb|AAD22153.1|AF061282_6 (AF061282) polyprotein [Sorghum bicolor] Length = 1484 Score = 625 bits (1595), Expect(2) = 0.0 Identities = 336/665 (50%), Positives = 427/665 (63%) Frame = +3 Query: 66 SCLVTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEG 245 S ++ G + I +++ DVI G+ W+ + ++C + V L P +G Sbjct: 445 SASLSLRGVDFPISPMVMRTSGIDVILGLDWMKQHATNINCKERVVVLTTP-------KG 497 Query: 246 DYTSTPVHIIYFLRAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLDVFPTDLPGM 425 + S V + L AK + L DD +V EF DVFP +LPGM Sbjct: 498 ERISVDVTMQAPLAAK----------VNQLTDDVDP-----QNLVVDEFPDVFPDELPGM 542 Query: 426 PPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLF 605 PPDRDI+F I+L PGT PI+ Y M KGF RPS+SPWG+PV+F Sbjct: 543 PPDRDIEFIIELLPGTAPIAKRPYRMGVKELEELKKQIKELQDKGFIRPSSSPWGAPVIF 602 Query: 606 VKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRA 785 V KKDGS RMC+DY+ LN+V +KNKYPLP ID+LFDQL+GAC FSKID SGYHQLKIR Sbjct: 603 VDKKDGSQRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLRGACVFSKIDLRSGYHQLKIRN 662 Query: 786 TDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKS 965 +D+PKTAF TRY YE+ VMSFGLTNAPA FM +MN + YLD FV++FIDDILV+SK+ Sbjct: 663 SDIPKTAFTTRYGLYEYTVMSFGLTNAPAYFMYMMNKVFMEYLDKFVVVFIDDILVFSKT 722 Query: 966 NKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWE 1145 +EH HLR+VL+ LRE KLYAK SKCEFWL+ VSFLGHVVS + VDP K++ V +W+ Sbjct: 723 KEEHAEHLRLVLQKLREHKLYAKRSKCEFWLEEVSFLGHVVSNGGIAVDPSKVKDVLNWK 782 Query: 1146 RPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLT 1325 PT+V+ +RSF+GLA YYRRF++GFS +A +T L +++ VWSD+C+ SF++ LT Sbjct: 783 PPTDVSEIRSFLGLAGYYRRFIEGFSKLAKPMTALLEKNAKFVWSDKCQASFEEFKKRLT 842 Query: 1326 TAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAV 1505 TAP+L LP K+F +YCDAS GLG LM+E V+AYASRQL+ HE NYPTHDLELAAV Sbjct: 843 TAPVLVLPDLSKSFSIYCDASRLGLGCVLMQEGRVVAYASRQLRKHELNYPTHDLELAAV 902 Query: 1506 VFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKAN 1685 V ALK W+HYL G K ++YTDH+SL+Y+FTQ LNLRQRRW+EL+KDYD+ + YHP KAN Sbjct: 903 VHALKIWRHYLIGHKSDIYTDHKSLKYIFTQTDLNLRQRRWLELIKDYDLEVHYHPGKAN 962 Query: 1686 VVADALSRKAGSMESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLD 1865 VVADALSRK + E A + L E L N M + E +E + + Sbjct: 963 VVADALSRKKYANELQATPE--SEELCAEFAYL-NLGMVVNATE-------IEITPTLEE 1012 Query: 1866 KIKGKQFNDEKLIMFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSF 2045 +I Q DEKL +LGKA ID+ GVL +C+P V I TIL E H Sbjct: 1013 EIVKGQLEDEKLKEIAQNVVLGKAPGFRIDDNGVLWFGKRICVPEVKAIRDTILREAHES 1072 Query: 2046 KVCLH 2060 +H Sbjct: 1073 AYSIH 1077 Score = 459 bits (1168), Expect(2) = 0.0 Identities = 218/409 (53%), Positives = 286/409 (69%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+TKMY DL+Q +WW +KRD+ E+VA C CQ+VK EHQ P G LQ M IP++KW Sbjct: 1075 SIHPGSTKMYLDLRQKYWWYGLKRDVAEYVALCDTCQRVKAEHQRPAGLLQPMKIPEWKW 1134 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 E++ MDF+VG P+T YDSIWVIVDRLTK AHFIPVK +Y+ ++ A+LY+ ++ LHGV Sbjct: 1135 EEVGMDFIVGLPRTQRGYDSIWVIVDRLTKVAHFIPVKTSYSGDRLAELYMERIVCLHGV 1194 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SDR T+FTS FWK +H+ LGT+++ T +HP TDGQ+ER Q+LEDMLRAC +++ Sbjct: 1195 PKKIVSDRGTQFTSHFWKAVHDSLGTKLNFSTAYHPQTDGQTERINQILEDMLRACALQY 1254 Query: 2594 AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESL 2773 WD LP AEFSYNNSYQ S+ MAPFEALYGR+CR+P+ W E + +GTD+LR + Sbjct: 1255 GTSWDKSLPYAEFSYNNSYQQSLKMAPFEALYGRKCRTPLFWNQTGETQVFGTDVLRHAE 1314 Query: 2774 DKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYI 2953 +V+ I++ AQSR+K Y + R+ F G+ V LKVSPM+ V F +GKL PRY+ Sbjct: 1315 QQVRTIRDNLRVAQSRQKSYADTRRRELAFEVGDYVYLKVSPMRSVKRFNMKGKLVPRYV 1374 Query: 2954 GPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLSYEE 3133 GPFKVL+R GEVAY L LP LSGVH VF+VS LK + + + + +L+YEE Sbjct: 1375 GPFKVLERRGEVAYRLELPESLSGVHDVFHVSQLKKCLRVPEEQLPLEELSVKGDLTYEE 1434 Query: 3134 EPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLF 3280 PV IL+ RSR I KVQW E+TWE+E D+++ Y +LF Sbjct: 1435 YPVKILETAERVTRSRVIRMCKVQWNRHSEAEATWEREDDLRKSYSYLF 1483 >dbj|BAA95869.1| (AP002071) Similar to Sorghum bicolor 22 kDa kafirin cluster; polyprotein. (AF061282) [Oryza sativa] Length = 1524 Score = 617 bits (1574), Expect(2) = 0.0 Identities = 322/652 (49%), Positives = 426/652 (64%), Gaps = 2/652 (0%) Frame = +3 Query: 105 DLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYTSTP-VHIIYF 281 +L++LE D DVI GM WL+ + ++DC ++T+ L + ++ P V + Sbjct: 474 NLILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGEEVTFQSLVPRKPGVSLNQA 533 Query: 282 LRAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLDVFPTDLPGMPPDRDIDFCIDL 461 ++ V+ ++ TT+ +E + IVRE+ +VFP DL MPP RDI+F IDL Sbjct: 534 AGEEQEVA----------VEKTTK--KLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDL 581 Query: 462 EPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCI 641 PGT PI Y M KG+ RPS SPWG+PV+FV+KKD + RMC+ Sbjct: 582 VPGTAPIHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCV 641 Query: 642 DYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRY 821 DY+ LN+V +KNKYPLP ID+LFDQL+GA FSKID SGYHQL+IR D+PKTAF TRY Sbjct: 642 DYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRY 701 Query: 822 RHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVL 1001 +E VMSFGLTNAPA FM+LMN + +LD FV++FIDDIL+YSKS +EHE HLR+VL Sbjct: 702 GLFECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVL 761 Query: 1002 EMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFV 1181 E L+E +LYAKFSKC+FWL V FLGH+V+ V VDP +E V W P VT VRSF+ Sbjct: 762 EKLKEHQLYAKFSKCDFWLKEVQFLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFL 821 Query: 1182 GLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGK 1361 GLA YYRRF++ FS +A +T L K+ +WS EC SF +L L +AP+L LP + K Sbjct: 822 GLAGYYRRFIENFSKIAKPMTQLLKKEEKFIWSAECNRSFVELKRRLVSAPVLILPDQTK 881 Query: 1362 NFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLY 1541 +F VYCDAS GLG LM++ V++YASRQL+ HE NYPTHDLELAAVV ALK W+HYL Sbjct: 882 DFQVYCDASRQGLGCVLMQDGKVVSYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLI 941 Query: 1542 GVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGS 1721 G +CEVYTDH+SL+Y+FTQ LNLRQRRW+EL+KDYD+ I YHP KANVVADALSRK+ Sbjct: 942 GNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMGIHYHPGKANVVADALSRKSYC 1001 Query: 1722 MESLAHSQVSRRPLAREVQTLANDLMRLEVN-EKGGFLAYVEERSSFLDKIKGKQFNDEK 1898 + L EVQ DL L + + GF+A +E + + +++++ Q +D + Sbjct: 1002 NVAWVEQ------LCCEVQ---RDLEHLNLGIVEHGFVAALEAQPTLVEQVRIAQASDPE 1052 Query: 1899 LIMFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 + +GKA + DE G + + +C+P ++ ILTE H + +H Sbjct: 1053 IAELKKNMRVGKARGFVEDEQGTIWMGERLCVPENKELKDLILTEAHQTQYSIH 1106 Score = 462 bits (1176), Expect(2) = 0.0 Identities = 214/412 (51%), Positives = 295/412 (70%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+TKMY+DLK+ FWW M+R+I EFVA C CQ+VK EHQ P G LQ + IP++KW Sbjct: 1104 SIHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWKW 1163 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 E+I MDF+ G P+T +DSIWV+VDRLTK AHFIPV TY+ +K A+LY++ ++ LHGV Sbjct: 1164 EEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAHFIPVHTTYSGKKLAELYLARIMCLHGV 1223 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SDR ++FTS FW+ L EELGTR++ T +HP TDGQ+ER Q+LEDMLRAC ++F Sbjct: 1224 PKKIVSDRGSQFTSKFWQKLQEELGTRLNFSTAYHPQTDGQTERVNQILEDMLRACALDF 1283 Query: 2594 AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESL 2773 G WD LP AEFSYNNSYQ+S+ MAPFEALYGRRCR+P+ W E + +GT++L E+ Sbjct: 1284 GGAWDKSLPYAEFSYNNSYQASLQMAPFEALYGRRCRTPLFWDQTGERQLFGTEVLNEAE 1343 Query: 2774 DKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYI 2953 +KV+ ++E+ AQSR+K Y + R+ F G+ V L+V+P++GV F +GKL+PR++ Sbjct: 1344 EKVRAVRERLRIAQSRQKSYADNRRRELAFETGDYVYLRVTPLRGVHRFQTKGKLAPRFV 1403 Query: 2954 GPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLSYEE 3133 GP+++L+R GEVAY+L LP + G+H VF+VS LK D + + E+L+Y E Sbjct: 1404 GPYRILERRGEVAYQLELPSNMLGIHNVFHVSQLKKCLRVPEEQASPDQIEIQEDLTYVE 1463 Query: 3134 EPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLFTDS 3289 +P IL+ K R++ I KVQW + EE+TWE+E +++ +PHLF S Sbjct: 1464 KPTRILETSERKTRNKVIRFCKVQWSHHSEEEATWEREDELKATHPHLFASS 1515 >gb|AAD27547.1|AF111709_1 (AF111709) polyprotein [Oryza sativa subsp. indica] Length = 1521 Score = 622 bits (1586), Expect(2) = 0.0 Identities = 331/665 (49%), Positives = 431/665 (64%), Gaps = 7/665 (1%) Frame = +3 Query: 66 SCLVTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEG 245 S L+ S +L++LE D DVI GM WL+ ++DC +TVTL Sbjct: 458 SVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTN---------- 507 Query: 246 DYTSTPVHIIYFLRAKKMVSKGCLAFL----AHLIDDTTQ--IPSIESVSIVREFLDVFP 407 + T VH K +VS A L A + DT + + +E + IV E+ +VFP Sbjct: 508 EKGETVVH-------KSLVSPKQGASLNQIEAEIPVDTMEKNLRKLEDIPIVCEYPEVFP 560 Query: 408 TDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPW 587 DL MPP R+I+F IDL PGT PI Y MA KG+ RPS SPW Sbjct: 561 EDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPSTSPW 620 Query: 588 GSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYH 767 G+PV+FV+KKD + RMC+DY+ LN+V +KNKYPLP ID+LFDQL+GA FSKID SGYH Sbjct: 621 GAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYH 680 Query: 768 QLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDI 947 QL+IR D+PKTAF TRY YE VMSFGLTNAPA FM+LMN + +LD FV++FIDDI Sbjct: 681 QLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDI 740 Query: 948 LVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIE 1127 L+YSKS +EHE HLR+VLE L+E +LYAKFSKC+FWL V FLGHV++ V VDP +E Sbjct: 741 LIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAVDPSNVE 800 Query: 1128 VVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQK 1307 V W P V+ +RSF+GLA YYRRF++ FS +A +T L K+ W+ EC++SF++ Sbjct: 801 SVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTQLLKKDEKFKWTTECDKSFEE 860 Query: 1308 LNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHD 1487 L L +AP+L LP K+F VYCDAS GLG LM+E V+AYASRQL+ HE NYPTHD Sbjct: 861 LKKKLVSAPVLILPDPTKDFQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHD 920 Query: 1488 LELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILY 1667 LELAAVV ALK W+HYL G +CEVYTDH+SL+Y+FTQ LNLRQRRW+EL+KDYD++I Y Sbjct: 921 LELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHY 980 Query: 1668 HPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQTLANDLMRLEVN-EKGGFLAYVE 1844 HP KANVVADALSRK + + + + L + L V + GF+A +E Sbjct: 981 HPGKANVVADALSRK---------NYCTALCVEGMCEELRQEFEHLNVGIVEHGFVAALE 1031 Query: 1845 ERSSFLDKIKGKQFNDEKLIMFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTI 2024 R + +D+++ Q ND ++ +GKA + + DE G + + +C+P ++ I Sbjct: 1032 ARPTLVDQVRAAQVNDPEIAELKKNMRVGKARDFLEDEHGTIWMGERLCVPDDKELKDLI 1091 Query: 2025 LTEVHSFKVCLH 2060 LTE H + +H Sbjct: 1092 LTEAHQTQYSIH 1103 Score = 457 bits (1164), Expect(2) = 0.0 Identities = 211/412 (51%), Positives = 296/412 (71%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+TKMY+DLK+ FWW M+R+I EFVA C CQ+VK EHQ P G LQ + IP++KW Sbjct: 1101 SIHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIPEWKW 1160 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 E+I MDF+ G P+T +DSIWV+VDRLTK AHFIPV+ TY ++ A+LY++ ++ LHGV Sbjct: 1161 EEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAHFIPVQTTYTGKRLAELYLARIMCLHGV 1220 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SDR ++FTS FW+ L EE+GTR++ T +HP TDGQ+ER Q+LEDMLRAC ++F Sbjct: 1221 PRKIVSDRGSQFTSKFWQKLQEEMGTRLNFSTAYHPQTDGQTERVNQILEDMLRACALDF 1280 Query: 2594 AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESL 2773 G WD LP AEFSYNNSYQ+S+ MAPF+ALYGR+CR+P+ W E + +GT++L E+ Sbjct: 1281 GGAWDKSLPYAEFSYNNSYQASLQMAPFKALYGRKCRTPLFWDQTGERQLFGTEVLAEAE 1340 Query: 2774 DKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYI 2953 +KV+ I+E+ AQSR+K Y + R+ F G+ V L+V+P++GV F +GKL+PR++ Sbjct: 1341 EKVRIIRERLRIAQSRQKSYADNRRRELTFEAGDYVYLRVTPLRGVHRFQTKGKLAPRFV 1400 Query: 2954 GPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLSYEE 3133 GP+K+L+R GEVAY+L LP + G+H VF+VS LK + + + E+L+Y E Sbjct: 1401 GPYKILERRGEVAYQLELPSNMIGIHDVFHVSQLKKCLRVPEEQADSEHIDIQEDLTYVE 1460 Query: 3134 EPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLFTDS 3289 +PV ILD + R++ +VQW + EE+TWE+E +++ +PHLFT S Sbjct: 1461 KPVRILDTSERRTRNKVTRFCRVQWSHHSEEEATWEREDELKAAHPHLFTSS 1512 >emb|CAA73042.1| (Y12432) polyprotein [Ananas comosus] Length = 871 Score = 639 bits (1630), Expect(2) = 0.0 Identities = 317/543 (58%), Positives = 395/543 (72%) Frame = +3 Query: 432 DRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVK 611 DR+I+F IDL PGT PIS Y MAP KGF RPS SPWG+PVLFVK Sbjct: 2 DREIEFVIDLVPGTTPISKAPYRMAPAELRELRAQLQDLLDKGFIRPSVSPWGAPVLFVK 61 Query: 612 KKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATD 791 KKDGS R+C+DY++LNKV +KNKYPLP ID+LFDQLQG+C +SKID SGYHQLKI+ D Sbjct: 62 KKDGSLRLCVDYRELNKVTIKNKYPLPRIDDLFDQLQGSCVYSKIDLQSGYHQLKIKPED 121 Query: 792 VPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNK 971 V KTAF TRY HYEF VM FGLTNAP AFM LMN + KPYLD FV++FIDDILVYS+S+ Sbjct: 122 VSKTAFRTRYGHYEFAVMPFGLTNAPTAFMDLMNRVFKPYLDRFVVVFIDDILVYSRSDA 181 Query: 972 EHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERP 1151 +HE HLRIVL++LREK+LY K KCEFWL V+FLGH++S + VDP KIE +K W R Sbjct: 182 DHEEHLRIVLQVLREKELYVKLKKCEFWLREVAFLGHLISGSGIAVDPKKIEAIKDWPRL 241 Query: 1152 TNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTA 1331 T+VT +RSF+GLA YYRRFV+ F+ +++ LT LT + V +W+D CE SFQ+L LTTA Sbjct: 242 TSVTEIRSFLGLAGYYRRFVERFAKLSTPLTRLTHKGVKFIWNDACERSFQELKQRLTTA 301 Query: 1332 PILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVF 1511 PIL LPV G ++VY DAS GLG LM++ VIAYASRQLK +E+NYPTHDLELAAVVF Sbjct: 302 PILTLPVAGAGYVVYSDASLNGLGCVLMQDDKVIAYASRQLKEYEKNYPTHDLELAAVVF 361 Query: 1512 ALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVV 1691 ALK W+HYLYG +CEVYTDH+SL+Y+FTQK LNLRQRRW+ELLKDYD+TILYHP KANVV Sbjct: 362 ALKLWRHYLYGERCEVYTDHKSLKYLFTQKELNLRQRRWLELLKDYDLTILYHPGKANVV 421 Query: 1692 ADALSRKAGSMESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKI 1871 ADALSRK SME+LA V++ L +++ L +++ + + L + + + LD+I Sbjct: 422 ADALSRK--SMENLAMHVVTQPRLIEQMKRLELEIVTPDTPMR---LMTLVVQPTLLDRI 476 Query: 1872 KGKQFNDEKLIMFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKV 2051 K KQ +D +L K + G + +D G++ +G +C+P I + IL E H Sbjct: 477 KEKQASDVELQKIKGKMVDGCTGDFTLDGDGLMRFRGRICVPADSGIKEDILQEAHRAPY 536 Query: 2052 CLH 2060 +H Sbjct: 537 AIH 539 Score = 435 bits (1107), Expect(2) = 0.0 Identities = 198/333 (59%), Positives = 258/333 (77%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 HPG TKMY+DLK +WW +K+D+ EFVA+C CQ+VK EH++P G LQ +PIP +KWEK Sbjct: 539 HPGGTKMYKDLKLLYWWPGIKKDVGEFVAKCLTCQQVKAEHRVPAGKLQSLPIPVWKWEK 598 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 I MDFV G P++ +D+IWVIVDRLTKSAHFIP+ T+ E+ A++Y+ E++RLHGVP Sbjct: 599 ITMDFVTGLPRSQAGHDAIWVIVDRLTKSAHFIPIHTTWTGERLAQVYLDEIVRLHGVPT 658 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I+SDR T+F S FW++L + LGTR+D T FHP +DGQSERTIQ LEDMLRACV++F G Sbjct: 659 SIVSDRDTRFVSHFWRSLQDALGTRLDFSTAFHPQSDGQSERTIQTLEDMLRACVIDFQG 718 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDK 2779 W LP+AEF+YNNSYQ+SI MAPFEALYGR+CRSP+ W + E G D+L+E+ K Sbjct: 719 GWSQHLPMAEFAYNNSYQASIKMAPFEALYGRKCRSPLHWSEVGESLALGPDVLQEAEVK 778 Query: 2780 VKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGP 2959 V+ +E+ L AQSR++ Y ++ RD EF G+ V LKVSP +G+ FG RGKLSPR+IGP Sbjct: 779 VRIARERLLTAQSRQRSYADRRRRDLEFQVGDHVFLKVSPTRGIKRFGIRGKLSPRFIGP 838 Query: 2960 FKVLKRVGEVAYELALPPGLSGVHPVFYVSMLK 3058 +++L+RVG VAY LALPP LSGVH VF+VS+++ Sbjct: 839 YEILERVGPVAYRLALPPNLSGVHNVFHVSVVR 871 >gb|AAD20658.1| (AC006570) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1611 Score = 628 bits (1603), Expect(2) = 0.0 Identities = 339/666 (50%), Positives = 430/666 (63%), Gaps = 1/666 (0%) Frame = +3 Query: 63 RSCLVTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWE 242 R V G N DL+I+ + DVI GM WL A +DC+ + + L ++ Sbjct: 522 RGISVVVNGVNMPADLIIVPLKKHDVILGMDWLGKYKAHIDCHRGRIQFERDEGM-LKFQ 580 Query: 243 GDYTSTPVHIIYFLRAKKMVSKGCLAFLAHLID-DTTQIPSIESVSIVREFLDVFPTDLP 419 G T++ +I ++A++M+ KGC A+LA + + ++ + IV EF DVF + Sbjct: 581 GIRTTSGSLVISAIQAERMLGKGCEAYLATITTKEVGASAELKDIPIVNEFSDVFAA-VS 639 Query: 420 GMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPV 599 G+PPDR F I+LEPGT PIS Y MAP KGF RPS+SPWG+PV Sbjct: 640 GVPPDRSDPFTIELEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSPWGAPV 699 Query: 600 LFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKI 779 LFVKKKDGSFR+CIDY+ LNKV VKNKYPLP ID L DQL GA FSKID +SGYHQ+ I Sbjct: 700 LFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPI 759 Query: 780 RATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYS 959 TDV KTAF TRY H+EF+VM FGLTNAPAAFM +MNG+ + +LD FVI+FI+DILVYS Sbjct: 760 EPTDVRKTAFRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYS 819 Query: 960 KSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKS 1139 KS + H+ HLR VLE LRE +L+AK SKC FW V FLGHV+S V VDP KI +K Sbjct: 820 KSWEAHQEHLRAVLERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKE 879 Query: 1140 WERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTL 1319 W RP N T +RSF+GLA YYRRFV F+S+A LT LT + WSDECE+SF +L + Sbjct: 880 WPRPRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAM 939 Query: 1320 LTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELA 1499 LT AP+L LP EG+ + VY DAS GLG LM++ +VIAYASRQL+ HE+NYPTHDLE+A Sbjct: 940 LTNAPVLVLPEEGEPYTVYTDASIVGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMA 999 Query: 1500 AVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEK 1679 AVVF LK W+ YLYG K ++YTDH+SL+Y+FTQ LNLRQRRWMEL+ DY++ I YHP K Sbjct: 1000 AVVFFLKIWRSYLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGK 1059 Query: 1680 ANVVADALSRKAGSMESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSF 1859 AN VADALSR+ +E+ SQV L + TL + + EV G A +++ Sbjct: 1060 ANQVADALSRRRSEVEA-ERSQVD---LVNMMGTLHVNALSKEVEPLGLGAA---DQADL 1112 Query: 1860 LDKIKGKQFNDEKLIMFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVH 2039 L +I+ Q DE++ + E G + V G VC+P + + IL E H Sbjct: 1113 LSRIRLAQERDEEIKGWAQ----NNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAH 1168 Query: 2040 SFKVCLH 2060 K +H Sbjct: 1169 QSKFSIH 1175 Score = 418 bits (1062), Expect(2) = 0.0 Identities = 203/413 (49%), Positives = 278/413 (67%), Gaps = 1/413 (0%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+ KMYRDLK+++ W MK+D+ +VA+CP CQ VK EHQ+P G LQ +PIP++KW Sbjct: 1173 SIHPGSNKMYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKW 1232 Query: 2234 EKIAMDFVVGFPKTI-GKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHG 2410 + I MDFV G P I K++++WV+VDRLTKSAHF+ + AE A+ YI E++RLHG Sbjct: 1233 DHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIVRLHG 1292 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 +P+ I+SDR T+FTS FWK + LGTRV+L T +HP TD QSERTIQ LEDMLRACV++ Sbjct: 1293 IPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDMLRACVLD 1352 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRES 2770 + G+W+ +L L EF+YNNS+Q+SI M+P+EALYGR CR+P+ W E R +G ++ E+ Sbjct: 1353 WGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDET 1412 Query: 2771 LDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRY 2950 +++K ++ K AQ R+K Y ++ ++ EF G+ V LK KG F R KLSPRY Sbjct: 1413 TERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRY 1472 Query: 2951 IGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLSYE 3130 +GP+KV++RVG VAY+L LPP L+ H VF+VS L+ D + L EN++ E Sbjct: 1473 VGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSDQEESVEDIPPGLKENMTVE 1532 Query: 3131 EEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLFTDSG 3292 PV I+DR R + +KV W R EE TWE E M+ +P F + G Sbjct: 1533 AWPVRIMDRMTKGTRGKARDLLKVLWNCRGREEYTWETENKMKANFPEWFKEMG 1586 >gb|AAD22158.1|AF061282_11 (AF061282) polyprotein [Sorghum bicolor] Length = 924 Score = 567 bits (1446), Expect(2) = 0.0 Identities = 290/502 (57%), Positives = 360/502 (70%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 KG+ RPSASPWGSPVLFVKKKDGS RMCIDY+ LN V VKNKYPLP ID+L DQL+ A Sbjct: 19 KGYIRPSASPWGSPVLFVKKKDGSMRMCIDYRNLNAVTVKNKYPLPRIDDLLDQLKDAKF 78 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 FSKID SGYHQ+KIR+ DVPKTAF TRY YEF V+SFGLTNAPA FM++MN + L Sbjct: 79 FSKIDLRSGYHQMKIRSEDVPKTAFVTRYGQYEFTVVSFGLTNAPAYFMNMMNKVFMEEL 138 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 D FV++FIDDILVYS S +EHE HLR+VLE LR+ +LYAKFSKCEFWL+ V+FLGHV++ Sbjct: 139 DKFVVVFIDDILVYSASAEEHEQHLRVVLEKLRQNQLYAKFSKCEFWLEEVAFLGHVLTA 198 Query: 1095 D*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSV 1274 + V VDP KIE VK WE+P N T +RSF+GLA YYRRF++ FS +A +TNL K++ Sbjct: 199 EGVAVDPAKIEAVKEWEQPRNATDIRSFLGLAGYYRRFIENFSKIAKPMTNLLKKTNEFE 258 Query: 1275 WSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQL 1454 W+ ECE+SFQ L LTT P+L LP K+F+VYCDAS GLG LM+ VIAYAS QL Sbjct: 259 WTPECEQSFQTLKQKLTTTPVLALPDIEKDFVVYCDASKQGLGCVLMQSGKVIAYASLQL 318 Query: 1455 KVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWME 1634 K HE+ YPTHDLELAAVV ALK W+HYL G KC++YTDH+SL+Y FTQ+ LN+RQRRW+E Sbjct: 319 KDHEQRYPTHDLELAAVVHALKIWRHYLIGNKCDIYTDHKSLKYFFTQEDLNMRQRRWLE 378 Query: 1635 LLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQTLANDLMRLEVN 1814 L+KDY++ I YHP KANVVADALSRK S HS +S + E+ DL +LE+ Sbjct: 379 LIKDYNLEIHYHPGKANVVADALSRK-----SYCHS-LSMEAIPPELCQEMGDL-QLEIV 431 Query: 1815 EKGGFLAYVEERSSFLDKIKGKQFNDEKLIMFPYKELLGKANEAIIDEGGVL*VKGGVCI 1994 K G L+ + + D+I+ Q ++ + GK E +DE G K +C+ Sbjct: 432 PK-GLLSELRIQYDLEDRIRRAQRGCPEIQEVHERMEGGKCPEFRVDERGTYWCKNRICV 490 Query: 1995 PRVDDITKTILTEVHSFKVCLH 2060 P + + + IL+E H + C+H Sbjct: 491 PSDEPLREEILSEAHDSRYCIH 512 Score = 443 bits (1128), Expect(2) = 0.0 Identities = 209/413 (50%), Positives = 283/413 (67%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 HPG+TKMY DL++ FWW M++DI VA+C C +VK EHQ P G L+ + +P++KWE Sbjct: 512 HPGSTKMYADLRKVFWWKDMRKDIAGHVARCDTCNRVKAEHQRPAGLLKPLDVPEWKWEG 571 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 I+MDF+VG P++ +DSIWVIVDRLTK AHFIPVK Y E+ A LY+ ++RLHG P Sbjct: 572 ISMDFIVGLPRSPKGHDSIWVIVDRLTKVAHFIPVKTVYRTEQLADLYVDHILRLHGAPT 631 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 IISDR ++ S FW++LH+ +GTR+D T +HP TDGQ+ER QVLEDMLRACV+++ Sbjct: 632 SIISDRGPQWVSRFWQSLHKAIGTRLDYSTAYHPQTDGQTERVNQVLEDMLRACVLKYGS 691 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDK 2779 W+ L AEFSYNNSYQ+SI M+PFEALYGR+CR+P+ W E +G D ++E+ + Sbjct: 692 DWEKSLSHAEFSYNNSYQASIQMSPFEALYGRKCRTPLIWSQVGERAFFGPDKIKEAEEG 751 Query: 2780 VKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGP 2959 V ++E AQSR+K Y + RD EF G+ V LKVSP++G F +GKL+PR++GP Sbjct: 752 VAQVRENLRIAQSRQKSYADNRRRDLEFYVGDHVYLKVSPLRGTFRFHVKGKLAPRFVGP 811 Query: 2960 FKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLSYEEEP 3139 +++ KR+G++AY L LP +SGVHPVF+VS L+ + +++ L E L Y E P Sbjct: 812 YRISKRIGKLAYRLELPEEMSGVHPVFHVSQLRKCLKLPEEEVPIETLDLQETLEYREYP 871 Query: 3140 VAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLFTDSGTP 3298 V ILDR + RS KV W N E+TWEKE+++Q RYP+LF TP Sbjct: 872 VRILDRATKETRSSTFPMCKVLWSNHTEREATWEKESELQLRYPYLFERYVTP 924 >gb|AAD22339.1|AC006955_25 (AC006955) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1411 Score = 629 bits (1606), Expect(2) = 0.0 Identities = 333/662 (50%), Positives = 432/662 (64%), Gaps = 3/662 (0%) Frame = +3 Query: 75 VTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYT 254 + G + DL+I + +DVI GM WL LDC+ V+ +P LV++G Sbjct: 384 IQIAGESMPADLIISPVELYDVILGMDWLDHYRVHLDCHRGRVSFERPEGR-LVYQGVRP 442 Query: 255 STPVHIIYFLRAKKMVSKGCLAFLAHL-IDDTTQIPSIESVSIVREFLDVFPTDLPGMPP 431 ++ +I ++AKKM+ KGC A+L + + ++ ++ + +++EF DVF + L G+PP Sbjct: 443 TSGSLVISAVQAKKMIEKGCEAYLVTISMPESLGQVAVSDIRVIQEFEDVFQS-LQGLPP 501 Query: 432 DRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVK 611 R F I+LEPGT P+S Y MAP KGF RPS SPWG+PVLFVK Sbjct: 502 SRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLEDLLGKGFIRPSTSPWGAPVLFVK 561 Query: 612 KKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATD 791 KKDGSFR+CIDY+ LN V VKNKYPLP ID L DQL+GA FSKID +SGYHQ+ I D Sbjct: 562 KKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEAD 621 Query: 792 VPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNK 971 V KTAF TRY H+EF+VM F LTNAPAAFM LMN + + +LD FVI+FIDDILVYSKS + Sbjct: 622 VRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPE 681 Query: 972 EHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERP 1151 EHE HLR V+E LRE+KL+AK SKC FW + FLGH+VS + V VDP KIE ++ W RP Sbjct: 682 EHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRP 741 Query: 1152 TNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTA 1331 TN T +RSF+ L YYRRFVKGF+S+A +T LT + VP VWS ECEE F L +LT+ Sbjct: 742 TNATEIRSFLRLTGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTST 801 Query: 1332 PILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVF 1511 P+L LP G+ ++VY DAS GLG LM+ VIAYASRQL+ HE NYPTHDLE+A V+F Sbjct: 802 PVLALPEHGQPYMVYTDASRVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAVVIF 861 Query: 1512 ALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVV 1691 ALK W+ YLYG K +V+TDH+SL+Y+F Q LNLRQ RWMEL+ DYD+ I YHP KANVV Sbjct: 862 ALKIWRSYLYGGKVQVFTDHKSLKYIFNQPELNLRQMRWMELVADYDLEIAYHPGKANVV 921 Query: 1692 ADALSRKAGSMESLAHSQVSRRPLAREVQTLANDL--MRLEVNEKGGFLAYVEERSSFLD 1865 ADALSRK +V P + V+ L +++ +RL V + +R+ L Sbjct: 922 ADALSRK----------RVGAAP-GQSVEALVSEIGALRLCVVAREPLGLEAVDRADLLT 970 Query: 1866 KIKGKQFNDEKLIMFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSF 2045 + + Q DE LI E +E G + V G VC+P+ +++ + IL+E H+ Sbjct: 971 RARLAQEKDEGLIAASKAE----GSEYQFAANGTIFVYGRVCVPKDEELRREILSEAHAS 1026 Query: 2046 KVCLH 2060 +H Sbjct: 1027 MFSIH 1031 Score = 362 bits (919), Expect(2) = 0.0 Identities = 183/409 (44%), Positives = 257/409 (62%), Gaps = 1/409 (0%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPGATKMYRDLK+++ W MKRD+ +VA+C CQ VK EHQ+P Sbjct: 1029 SIHPGATKMYRDLKRYYQWVGMKRDVANWVAECDVCQLVKAEHQVP-------------- 1074 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 D+IWVI+DRLTKSAHF+ ++ T A AK Y+SE+++LHGV Sbjct: 1075 ------------------DAIWVIMDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGV 1116 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P+ I+SDR +KFT FW+ ++GT+V + T +HP TDGQSERTIQ LEDMLR CV+++ Sbjct: 1117 PVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDW 1176 Query: 2594 AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESL 2773 GHW L L EF+YNNSYQ+SI MAPFEALYGR C +P+ W E +G D ++E+ Sbjct: 1177 GGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTPLRWTQVEERSIYGADYVQETT 1236 Query: 2774 DKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYI 2953 ++++ ++ AQ+R++ Y ++ R+ EF G++V LK++ ++G KLSPRY+ Sbjct: 1237 ERIRVLKLNMKEAQARQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSILETKLSPRYM 1296 Query: 2954 GPFKVLKRVGEVAYELALPPGLSGVHPVFYVSML-KTYHGDGNYIIRWDSVLLDENLSYE 3130 GPF++++RVG VAY L LP + H VF+V ML K H D +++ L N++ E Sbjct: 1297 GPFRIVERVGPVAYRLELPDVMRAFHKVFHVLMLRKCLHKDDEVLVKIPED-LQPNMTLE 1355 Query: 3131 EEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLF 3280 PV +L+R + +LR ++I IKV W V E TWE EA M+ R+ F Sbjct: 1356 ARPVRVLERRIKELRRKKIPLIKVLWDCDGVTEETWEPEARMKARFKKWF 1405 >gb|AAF67363.1| (AF262041) Hypothetical protein T32B20.f [Arabidopsis thaliana] Length = 1504 Score = 561 bits (1431), Expect(2) = 0.0 Identities = 314/662 (47%), Positives = 405/662 (60%), Gaps = 2/662 (0%) Frame = +3 Query: 75 VTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYT 254 + G + L+I + +DVI GM WL LDC+ V+ +P LV++G Sbjct: 505 IQIAGESMPAHLIISPVELYDVILGMDWLDHYRVHLDCHHGRVSFERPEGR-LVYQGVRP 563 Query: 255 STPVHIIYFLRAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLDVFPTDLPGMPPD 434 ++ +I ++A+KM+ KGC A+L I ESV +PP Sbjct: 564 TSGSLVISAVQAEKMIEKGCEAYLV-------MISMPESVG-------------QELPPS 603 Query: 435 RDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKK 614 R F I+LEPGT P+S Y M P KGF R + SPW + VLFVKK Sbjct: 604 RSDPFTIELEPGTAPLSKAPYRMVPVEMAELKKQLEDLLGKGFIRLNTSPWRTSVLFVKK 663 Query: 615 KDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDV 794 KDGSFR+CIDY++LN+V VKNKYPLP ID L DQL+GA FSKID +SGYHQ+ I DV Sbjct: 664 KDGSFRLCIDYRELNRVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADV 723 Query: 795 PKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKE 974 KTAF TRY H+EF+VM FGLTNAPAAFM LMN + + +LD FVI+FIDDILVYSKS +E Sbjct: 724 RKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEE 783 Query: 975 HE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPT 1154 H+ HLR V+E LRE+KL+AK SKC FW + FLGH+VS + V VDP KIE ++ W RPT Sbjct: 784 HDVHLRRVMEKLREEKLFAKLSKCSFWQRKMGFLGHIVSVEGVSVDPEKIEAIRDWPRPT 843 Query: 1155 NVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAP 1334 N T +RSF+GLA YYRRFVKGF+S+A +T LT + VP VWS ECEE F +LLT+ P Sbjct: 844 NATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFV---SLLTSTP 900 Query: 1335 ILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFA 1514 +L LP G+ ++VY DAS GLG LM+ VIAYASRQL+ HE NYPTHDLE+AA Sbjct: 901 VLALPEHGEPYMVYTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAA---- 956 Query: 1515 LKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVA 1694 V+TDH+SL+Y+FTQ LNLRQRRWMEL+ DYD+ I YHP KAN+VA Sbjct: 957 --------------VFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPSKANMVA 1002 Query: 1695 DALSRKAGSMESLAHSQVSRRPLAREVQTLANDL--MRLEVNEKGGFLAYVEERSSFLDK 1868 DALS K V P + V+ L +++ +RL + +R+ L + Sbjct: 1003 DALSCKL----------VGAAP-GQSVEALVSEIGALRLCAVAREPLGLEAVDRADLLTR 1051 Query: 1869 IKGKQFNDEKLIMFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFK 2048 ++ Q DE LI E +E G + V G VC+P+ +++ + IL+E H+ Sbjct: 1052 VRLAQEKDEGLIAASKAE----GSEYQFAANGTILVHGRVCVPKDEELRREILSEAHASM 1107 Query: 2049 VCLH 2060 +H Sbjct: 1108 FSIH 1111 Score = 339 bits (861), Expect(2) = 0.0 Identities = 180/409 (44%), Positives = 253/409 (61%), Gaps = 1/409 (0%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPGATKMYRDLK+++ W MKRD+ +VA+C CQ VK EHQ+PG LQ +PIP +KW Sbjct: 1109 SIHPGATKMYRDLKRYYQWVGMKRDVANWVAECDVCQLVKAEHQVPGSMLQSLPIPDWKW 1168 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 + I MDFVVG P + K D+IWVIVDRLTKSA+F+ ++ T A AK Y+SE+++LHGV Sbjct: 1169 DFITMDFVVGLPVSRTK-DAIWVIVDRLTKSAYFLAIRKTDGATVLAKKYVSEIVKLHGV 1227 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P+ I+SDR KFTS FW+ E+ T+V + T +HP TDGQSERTIQ LEDMLR CV+++ Sbjct: 1228 PVSIVSDRDFKFTSAFWRAFQAEMDTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDW 1287 Query: 2594 AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESL 2773 GHW L L + + Q ++ + P + E +G D ++E+ Sbjct: 1288 GGHWADHLSLVDV-VREAMQDTVMLDP-----------------SGERSIYGADYVQETT 1329 Query: 2774 DKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYI 2953 ++++ ++ AQ R + Y ++ R+ EF G+ V LK++ ++G KLSPRYI Sbjct: 1330 ERIRVLKLNMKEAQDRHRSYADKRKRELEFEVGDGVYLKMAMLRGPNRSISEIKLSPRYI 1389 Query: 2954 GPFKVLKRVGEVAYELALPPGLSGVHPVFYVSML-KTYHGDGNYIIRWDSVLLDENLSYE 3130 GPF++++RVG VAY L LP + VF+VSML K H D + + L N++ E Sbjct: 1390 GPFRIVERVGPVAYRLELPDVMRAFRKVFHVSMLRKCLHKDDEVLAKIPED-LQPNMTLE 1448 Query: 3131 EEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLF 3280 V +L+R + +LR ++I IKV W V E TWE EA M+ R+ F Sbjct: 1449 ARLVRVLERRIKELRRKKIPLIKVLWDCDGVTEETWEPEARMKARFKKWF 1498 >gb|AAD38284.1|AC007789_10 (AC007789) putative polyprotein [Oryza sativa] Length = 1220 Score = 613 bits (1563), Expect(2) = 0.0 Identities = 317/652 (48%), Positives = 423/652 (64%), Gaps = 1/652 (0%) Frame = +3 Query: 105 DLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYTSTPVHIIYFL 284 +L++LE D DVI GM WL+ ++DC TVTL +V++ + Sbjct: 471 NLILLESKDLDVILGMDWLTKFKGVIDCANCTVTLINEKGETVVYKS-----------LV 519 Query: 285 RAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLDVFPTDLPGMPPDRDIDFCIDLE 464 K+ VS + ++ + +E + IV E+ +VFP DL MPP R+I+F IDL Sbjct: 520 SPKQGVSLNQIEVEIPVVTEEKNSRKLEEIPIVCEYPEVFPEDLTTMPPKREIEFRIDLA 579 Query: 465 PGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCID 644 PGT PI Y MA KG+ RPS SPWG+PV+FV+KKD + RMC+D Sbjct: 580 PGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVD 639 Query: 645 YKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYR 824 Y+ LN+V +KNKYPLP ID+LFDQL+GA FSKID SGYHQL+IR D+PKTAF T+Y Sbjct: 640 YRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTQYG 699 Query: 825 HYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLE 1004 YE VMSFGLTNAPA FM+LMN + +LD FV++FIDDIL+YSK +EHE HLR+VLE Sbjct: 700 LYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKLEEEHEQHLRLVLE 759 Query: 1005 MLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVG 1184 L+E +LYAKFSKC+FWL V FLGH+++ V VD +E V W P V+ +RSF+G Sbjct: 760 KLKEHQLYAKFSKCDFWLSEVKFLGHIITAQGVAVDSSNVESVTKWTPPKTVSQIRSFLG 819 Query: 1185 LASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKN 1364 LA YYRRF++ FS +A +T L K+ W+ EC++SF++L L +AP+L LP + K+ Sbjct: 820 LAGYYRRFIENFSRIARPMTQLLKKDEKFKWTAECDKSFEELKKKLVSAPVLILPDQMKD 879 Query: 1365 FIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYG 1544 F VYCDAS GLG LM+E V+AYASRQL+ HE NYPTHDLELA VV ALK W+HYL G Sbjct: 880 FQVYCDASRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAVVVHALKIWRHYLIG 939 Query: 1545 VKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSM 1724 +CEVYTDH+SL+Y+FTQ LNLRQRRW+EL+KDYD++I YHP KANVVADALSRK+ Sbjct: 940 NRCEVYTDHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVADALSRKSYC- 998 Query: 1725 ESLAHSQVSRRPLAREVQTLANDLMRLEVN-EKGGFLAYVEERSSFLDKIKGKQFNDEKL 1901 + + + E+Q +L RL V + F+A +E R + +D+ + Q ND ++ Sbjct: 999 -----NALCTEDMCEELQ---QELERLNVGIVEHRFVAALEARPTLVDQFRAAQVNDPEI 1050 Query: 1902 IMFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 + +GKA + + DE + + +C+P ++ ILTE H + +H Sbjct: 1051 VELKKNMRVGKARDFLEDEHRTIWMGERLCVPDDKELKDLILTEAHQTQYSIH 1103 Score = 152 bits (381), Expect(2) = 0.0 Identities = 67/114 (58%), Positives = 85/114 (73%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+TKMY+DLK+ FWW M+R+I EFVA C CQ+VK EHQ P G Q + IPK+KW Sbjct: 1101 SIHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPVGLFQPLQIPKWKW 1160 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEV 2395 E+I MDF+ G P+T +DSIWV+VDRLTK AHFIPV TY +K A+L ++ + Sbjct: 1161 EEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAHFIPVHTTYTGKKLAELCLARI 1214 >gb|AAF18642.1|AC006228_13 (AC006228) F5J5.15 [Arabidopsis thaliana] Length = 1617 Score = 443 bits (1126), Expect(2) = 0.0 Identities = 278/652 (42%), Positives = 356/652 (53%), Gaps = 6/652 (0%) Frame = +3 Query: 105 DLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYTSTPVHIIYFL 284 DL+I +V +D I GM WL LDC+ V+ +P E D L Sbjct: 491 DLIINPVVLYDAILGMDWLDHYRVHLDCHRGRVSFERPEGRSAGRENDREG--------L 542 Query: 285 RAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLDVFPTDLPGMPPDRDIDFCIDLE 464 R +P + + +V+EF DVF + L G+PP R F I+LE Sbjct: 543 RG---------------------LP-VSDIWVVQEFEDVFQS-LQGLPPSRSDPFTIELE 579 Query: 465 PGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCID 644 GT P+S Y M P KGF RPS S WG+P Sbjct: 580 LGTAPLSKTPYRMVPAEIAELKKQLEDLLGKGFIRPSTSRWGAP---------------- 623 Query: 645 YKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYR 824 LN+V +KNKYPLP ID L DQL+GA FSKID + GYHQ I DV KTAF TRY Sbjct: 624 --GLNRVTLKNKYPLPRIDELLDQLRGATCFSKIDLTPGYHQFPIAEADVRKTAFRTRYG 681 Query: 825 HYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLE 1004 H+EF+VM FGLTNAP A M LMN + + +LD FVI+FIDDILVY KS +EHE HLR V+E Sbjct: 682 HFEFVVMPFGLTNAPTALMRLMNSVFQEFLDEFVIIFIDDILVYFKSPEEHEVHLRRVME 741 Query: 1005 MLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVG 1184 LRE+KL+AK KC FW + FLGH+VS + V+VDP +IE ++ W +PTN T +RSF+G Sbjct: 742 KLREQKLFAKLGKCSFWQREMDFLGHIVSAEGVLVDPEQIEAIRDWPKPTNATEIRSFLG 801 Query: 1185 LASYYRRF----VKGFS-SVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLP 1349 LA YYRRF +G+S V + + ++S V DE T+ I Sbjct: 802 LAGYYRRFEGVCEEGYSFCVVTGVRGGFRESEGDV--DE-----------YTSVSI---- 844 Query: 1350 VEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWK 1529 + ++VY DAS GLG LM+ VI YASRQL+ HE NYPTHDLE+AA++FALK W Sbjct: 845 ARAEPYMVYTDASRVGLGCVLMQRGKVIVYASRQLRKHEGNYPTHDLEMAAIIFALKIWG 904 Query: 1530 HYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSR 1709 YLYG K +V+TDH+SL+ +FTQ LNLRQRRWMEL+ DYD+ I YHP K NVVADALSR Sbjct: 905 SYLYGGKVQVFTDHKSLKDIFTQPELNLRQRRWMELVADYDLEIAYHPGKTNVVADALSR 964 Query: 1710 KAGSMESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFN 1889 K +V P + V+ L V+E G V R Sbjct: 965 K----------RVGAAP-GQSVEAL--------VSEIGALRLCVVARE------------ 993 Query: 1890 DEKLIMFPYK-ELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 P K E + +A G + V VC+P+ +++ + IL+E H+ +H Sbjct: 994 -------PLKLEAVDRA------ANGTILVHERVCLPKDEELRREILSEAHASMFSIH 1038 Score = 298 bits (755), Expect(2) = 0.0 Identities = 164/414 (39%), Positives = 229/414 (54%), Gaps = 1/414 (0%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPGATKMYRDLK+H+ W MKRD+ +V +C CQ VK EHQ+PGG LQ +PI + W Sbjct: 1036 SIHPGATKMYRDLKRHYQWVGMKRDVANWVTECDVCQLVKAEHQVPGGLLQSLPISE--W 1093 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 +K T A +P K Y+SE+++LHGV Sbjct: 1094 KK--------------------------TDGAAVLPKK-----------YVSEIVKLHGV 1116 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P+ I+S R +KFTS FW+ E+GT+V + T +HP TDGQSERTIQ LEDML+ CV+++ Sbjct: 1117 PVSILSHRDSKFTSAFWRAFQVEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLQMCVLDW 1176 Query: 2594 AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESL 2773 GHW L L +F+YNNSYQ+SI MAPFEALYGR CR+ + W E +G D ++E+ Sbjct: 1177 GGHWADHLSLVKFAYNNSYQASIGMAPFEALYGRPCRTLLCWTQVGEKSIYGADYVQETT 1236 Query: 2774 DKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYI 2953 ++++ ++ AQ R++ Y ++ R+ EF G + I Sbjct: 1237 ERIRVLKLNMKEAQDRQRSYADKRRRELEFEVGTEC-----------------------I 1273 Query: 2954 GPFKVLKRVGEVAYELALPPGLSGVHPVFYVSML-KTYHGDGNYIIRWDSVLLDENLSYE 3130 + +RVG VAY L LP + H VF+VSML K H D + + L N++ E Sbjct: 1274 SRWPYCERVGPVAYRLELPDVMRAFHNVFHVSMLRKCLHKDDEVLAKIPED-LQPNMTLE 1332 Query: 3131 EEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLFTDSGT 3295 PV +L+R + ++R ++I IKV W V E TWE EA ++ R+ F T Sbjct: 1333 ARPVRVLERRIKEVRRKKIPMIKVLWDCDGVTEETWEPEARIKARFKKWFEKQST 1387 >dbj|BAA81778.1| (AP000364) Similar to Transposon MAGGY gag and pol gene homologues. (L35053) [Oryza sativa] Length = 1491 Score = 610 bits (1556), Expect = e-172 Identities = 303/537 (56%), Positives = 377/537 (69%) Frame = +3 Query: 105 DLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYTSTPVHIIYFL 284 +L++L DVI GM WL+ + ++DC + VTL P W D +T Sbjct: 624 NLMVLMPQTLDVILGMDWLTKHRGVIDCRRREVTLTTP------WGSDMRAT------MD 671 Query: 285 RAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLDVFPTDLPGMPPDRDIDFCIDLE 464 + ++ + F T +P + + +V+ F DVFP DLPGMPPDRDI+F IDL Sbjct: 672 QDPRLTERAGGIF--------TMLPQ-KGIPVVQRFPDVFPEDLPGMPPDRDIEFLIDLI 722 Query: 465 PGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCID 644 PGT PIS Y M KGF RPS+SPWG+PVLFVKKKDGS RMC+D Sbjct: 723 PGTAPISKRPYRMPVNELEELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVD 782 Query: 645 YKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYR 824 Y+ LN+V +KNKYPLP ID+LFDQL+GA FSKID SGYHQLKIR D+PKTAF TRY Sbjct: 783 YRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDIPKTAFSTRYG 842 Query: 825 HYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLE 1004 YEF V+SFGLTNAPA FM+LMN + YLD FV++FIDDIL+YS+ +EH HLR+VLE Sbjct: 843 LYEFTVLSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSRDEEEHAEHLRLVLE 902 Query: 1005 MLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVG 1184 LR+ KLYAKFSKCEFWL V+FLGHV+S V VDP K+E V W+ P +VT +RSF+G Sbjct: 903 KLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIRSFLG 962 Query: 1185 LASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKN 1364 LA YYRRF +G S +A + L K+ VWS++C+ESF++L LT+APIL LP K+ Sbjct: 963 LAGYYRRFTEGLSKIARPMRQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIRKD 1022 Query: 1365 FIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYG 1544 F++YCDAS GLG LM++ V+AYASR+L+ HE NYPTHDLELAAVV ALK W+HYL G Sbjct: 1023 FVIYCDASRQGLGGVLMQDGKVVAYASRKLRPHEENYPTHDLELAAVVHALKIWRHYLIG 1082 Query: 1545 VKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKA 1715 C++YTDH+SL+Y+FTQ LNLRQRRW+EL+KDYD+ + YH KANVVADALSRK+ Sbjct: 1083 NHCDIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDLEVHYHLGKANVVADALSRKS 1139 Score = 270 bits (684), Expect = 5e-070 Identities = 132/284 (46%), Positives = 182/284 (63%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+TKMY+DLK +WW MKRD+ E+VA C CQKVK E+Q P Sbjct: 1172 SLHPGSTKMYQDLKDGYWWPNMKRDVAEYVALCDVCQKVKAEYQRPA------------- 1218 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 DRLTK+A FIPVK Y++ K +LY++ ++ LHG+ Sbjct: 1219 -------------------------DRLTKTARFIPVKTNYSSAKLVELYMTRIVCLHGI 1253 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P IISDR T+FTS FW+ +HE LG+ + T +HP TDGQ+ERT QVLEDMLRAC ++F Sbjct: 1254 PKRIISDRGTQFTSHFWEKVHEALGSYLAFSTAYHPQTDGQTERTNQVLEDMLRACALDF 1313 Query: 2594 AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESL 2773 + W+ LP EFSYNNS+Q+++ M+P EAL+GRRCR+P+ W + E +G D+++E+ Sbjct: 1314 SKDWERCLPYTEFSYNNSFQANLKMSPNEALFGRRCRTPLMWSETGERAVFGPDIIQEAE 1373 Query: 2774 DKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMK 2905 +KV+ I+++ AQSR+K Y + R+ EF EG+ V LKVSPM+ Sbjct: 1374 EKVRLIRDRLKVAQSRQKSYTDTRRRNLEFKEGDYVYLKVSPMR 1417 >emb|CAB78181.1| (AL161517) putative reverse-transcriptase-like protein [Arabidopsis thaliana] Length = 1240 Score = 609 bits (1554), Expect = e-172 Identities = 315/582 (54%), Positives = 399/582 (68%), Gaps = 14/582 (2%) Frame = +3 Query: 75 VTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYT 254 + G + DL+I + +DVI GM WL LD + V +P LV++G Sbjct: 358 IQIAGESMPADLIISPVELYDVILGMDWLDYYRVHLDWHRGRVFFERPEGR-LVYQGVRP 416 Query: 255 STPVHIIYFLRAKKMVSKGCLAFLAHL-IDDTTQIPSIESVSIVREFLDVFPTDLPGMPP 431 + +I ++A+KM+ KGC A+L + + ++ ++ + +V+EF DVF + L G+PP Sbjct: 417 ISGSLVISAVQAEKMIEKGCEAYLVTISMPESVGQVAVSDIRVVQEFQDVFQS-LQGLPP 475 Query: 432 DRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVK 611 + F I+LEPGT P+S Y MAP KGF RPS SPWG+PVLFVK Sbjct: 476 SQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKGFIRPSTSPWGAPVLFVK 535 Query: 612 KKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATD 791 KKDGSFR+CIDY++LN+V VKN+YPLP ID L DQL+GA FSKID +SGYHQ+ I D Sbjct: 536 KKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEAD 595 Query: 792 VPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNK 971 V KTAF TRY H+EF+VM FGLTNAPA FM LMN + + +LD FVI+FIDDILVYSKS + Sbjct: 596 VRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPE 655 Query: 972 EHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERP 1151 E E HLR V+E LRE+KL+AK SKC FW + FLGH+VS + V VDP KIE ++ W RP Sbjct: 656 EQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRP 715 Query: 1152 TNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTA 1331 TN T +RSF+G A YYRRFVKGF+S+A +T LT + VP VWS ECEE F L +LT+ Sbjct: 716 TNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTST 775 Query: 1332 PILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVF 1511 P+L LP G+ ++VY DAS GLG LM+ VIAYASRQL HE NYPTHDLE+AAV+F Sbjct: 776 PVLALPEHGQPYMVYTDASRVGLGCVLMQHGKVIAYASRQLMKHEGNYPTHDLEMAAVIF 835 Query: 1512 ALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVV 1691 ALK W+ YLYG K +V+TDH+SL+Y+FTQ LNLRQRRWMEL+ DYD+ I YHP KANVV Sbjct: 836 ALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPGKANVV 895 Query: 1692 ADALSRK-------------AGSMESLAHSQVSRRPLAREVQTLANDLMRLEVNEK 1820 DALSRK + +L V+R PL E A+ L R+ + +K Sbjct: 896 VDALSRKRVGAALGQSVEVLVSEIGALRLCAVAREPLGLEAVDRADLLTRVRLAQK 951 Score = 142 bits (354), Expect = 3e-031 Identities = 74/145 (51%), Positives = 99/145 (68%), Gaps = 2/145 (1%) Frame = +2 Query: 2069 ATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEKIAM 2248 ATKMYRDLK+++ W MK D+ +VA+C CQ VK EHQ+ GG LQ +PIP++KW+ I M Sbjct: 958 ATKMYRDLKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITM 1017 Query: 2249 DFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPI- 2425 D VVG + K D+IWVIVDRLTKSAHF+ ++ T A AK ++SE+++LHGVPL + Sbjct: 1018 DLVVGLRVSRTK-DAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMK 1076 Query: 2426 -ISDRCTKFTSMFWKTLHEELGTRVDL 2503 DR + + L E+G RV L Sbjct: 1077 EAQDRQRSYADKRRRELEFEVGDRVYL 1103 Score = 114 bits (283), Expect = 5e-023 Identities = 64/157 (40%), Positives = 93/157 (58%), Gaps = 1/157 (0%) Frame = +2 Query: 2810 AQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVLKRVGEV 2989 AQ R++ Y ++ R+ EF G++V LK++ ++G KLSPRY+GPFK+++RV V Sbjct: 1078 AQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFKIVERVEPV 1137 Query: 2990 AYELALPPGLSGVHPVFYVSML-KTYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVP 3166 AY L LP + H VF+VSML K H D + + L N++ E PV +L+R + Sbjct: 1138 AYRLELPDVMRAFHKVFHVSMLRKCLHKDDEALAKIPED-LQPNMTLEARPVRVLERRIK 1196 Query: 3167 KLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLF 3280 +LR ++I IKV W V E TWE EA M+ R+ F Sbjct: 1197 ELRQKKIPLIKVLWDCDGVTEETWEPEARMKARFKKWF 1234 >emb|CAB40024.1| (AL049523) putative reverse-transcriptase-like protein [Arabidopsis thaliana] Length = 1240 Score = 609 bits (1554), Expect = e-172 Identities = 315/582 (54%), Positives = 399/582 (68%), Gaps = 14/582 (2%) Frame = +3 Query: 75 VTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYT 254 + G + DL+I + +DVI GM WL LD + V +P LV++G Sbjct: 358 IQIAGESMPADLIISPVELYDVILGMDWLDYYRVHLDWHRGRVFFERPEGR-LVYQGVRP 416 Query: 255 STPVHIIYFLRAKKMVSKGCLAFLAHL-IDDTTQIPSIESVSIVREFLDVFPTDLPGMPP 431 + +I ++A+KM+ KGC A+L + + ++ ++ + +V+EF DVF + L G+PP Sbjct: 417 ISGSLVISAVQAEKMIEKGCEAYLVTISMPESVGQVAVSDIRVVQEFQDVFQS-LQGLPP 475 Query: 432 DRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVK 611 + F I+LEPGT P+S Y MAP KGF RPS SPWG+PVLFVK Sbjct: 476 SQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKGFIRPSTSPWGAPVLFVK 535 Query: 612 KKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATD 791 KKDGSFR+CIDY++LN+V VKN+YPLP ID L DQL+GA FSKID +SGYHQ+ I D Sbjct: 536 KKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEAD 595 Query: 792 VPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNK 971 V KTAF TRY H+EF+VM FGLTNAPA FM LMN + + +LD FVI+FIDDILVYSKS + Sbjct: 596 VRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPE 655 Query: 972 EHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERP 1151 E E HLR V+E LRE+KL+AK SKC FW + FLGH+VS + V VDP KIE ++ W RP Sbjct: 656 EQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRP 715 Query: 1152 TNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTA 1331 TN T +RSF+G A YYRRFVKGF+S+A +T LT + VP VWS ECEE F L +LT+ Sbjct: 716 TNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTST 775 Query: 1332 PILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVF 1511 P+L LP G+ ++VY DAS GLG LM+ VIAYASRQL HE NYPTHDLE+AAV+F Sbjct: 776 PVLALPEHGQPYMVYTDASRVGLGCVLMQHGKVIAYASRQLMKHEGNYPTHDLEMAAVIF 835 Query: 1512 ALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVV 1691 ALK W+ YLYG K +V+TDH+SL+Y+FTQ LNLRQRRWMEL+ DYD+ I YHP KANVV Sbjct: 836 ALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPGKANVV 895 Query: 1692 ADALSRK-------------AGSMESLAHSQVSRRPLAREVQTLANDLMRLEVNEK 1820 DALSRK + +L V+R PL E A+ L R+ + +K Sbjct: 896 VDALSRKRVGAALGQSVEVLVSEIGALRLCAVAREPLGLEAVDRADLLTRVRLAQK 951 Score = 142 bits (354), Expect = 3e-031 Identities = 74/145 (51%), Positives = 99/145 (68%), Gaps = 2/145 (1%) Frame = +2 Query: 2069 ATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEKIAM 2248 ATKMYRDLK+++ W MK D+ +VA+C CQ VK EHQ+ GG LQ +PIP++KW+ I M Sbjct: 958 ATKMYRDLKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITM 1017 Query: 2249 DFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPI- 2425 D VVG + K D+IWVIVDRLTKSAHF+ ++ T A AK ++SE+++LHGVPL + Sbjct: 1018 DLVVGLRVSRTK-DAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMK 1076 Query: 2426 -ISDRCTKFTSMFWKTLHEELGTRVDL 2503 DR + + L E+G RV L Sbjct: 1077 EAQDRQRSYADKRRRELEFEVGDRVYL 1103 Score = 114 bits (283), Expect = 5e-023 Identities = 64/157 (40%), Positives = 93/157 (58%), Gaps = 1/157 (0%) Frame = +2 Query: 2810 AQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVLKRVGEV 2989 AQ R++ Y ++ R+ EF G++V LK++ ++G KLSPRY+GPFK+++RV V Sbjct: 1078 AQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFKIVERVEPV 1137 Query: 2990 AYELALPPGLSGVHPVFYVSML-KTYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVP 3166 AY L LP + H VF+VSML K H D + + L N++ E PV +L+R + Sbjct: 1138 AYRLELPDVMRAFHKVFHVSMLRKCLHKDDEALAKIPED-LQPNMTLEARPVRVLERRIK 1196 Query: 3167 KLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLF 3280 +LR ++I IKV W V E TWE EA M+ R+ F Sbjct: 1197 ELRQKKIPLIKVLWDCDGVTEETWEPEARMKARFKKWF 1234 >gb|AAC26240.1| (AF077407) contains similarity to reverse transcriptases (PFam: rvt.hmm, score: 116.22) [Arabidopsis thaliana] Length = 1322 Score = 600 bits (1530), Expect = e-169 Identities = 310/568 (54%), Positives = 390/568 (68%), Gaps = 7/568 (1%) Frame = +3 Query: 75 VTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYT 254 + G + DL+I + +DVI GM WL LDC+ V+ +P LV++G Sbjct: 390 IQIAGESMPADLIISLVELYDVILGMDWLDHYRVHLDCHRGRVSFERPEGR-LVYQGVRP 448 Query: 255 STPVHIIYFLRAKKMVSKGCLAFLAHL-IDDTTQIPSIESVSIVREFLDVFPTDLPGMPP 431 ++ +I L+A+KM+ KGC A+L + + ++ ++ + +V+EF DVF + L +PP Sbjct: 449 TSGSLVISALQAEKMIEKGCEAYLMTISMPESVGQVAVSDIRVVQEFEDVFQS-LQELPP 507 Query: 432 DRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVK 611 R F I+LEPGT +S Y MAP K F RPS SPW +P+LF+K Sbjct: 508 SRSDPFTIELEPGTASLSKAPYRMAPAEMAELKKQLEDFLGKRFIRPSTSPWRAPMLFMK 567 Query: 612 KKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATD 791 KKDGSFR+CIDY+ LN+V VKNKYPLP ID L DQL+GA FSKID +S YHQ+ I D Sbjct: 568 KKDGSFRLCIDYRGLNQVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSDYHQIPIAEAD 627 Query: 792 VPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNK 971 V KTAF TRY H+EF+VM FGLTNAPAAFM LMN + + +LD FVI+FIDDILVYSKS + Sbjct: 628 VRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPE 687 Query: 972 EHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERP 1151 EHE HLR V E LRE+KL+AK SKC FW + FLGH+VS + V VDP KIE ++ W RP Sbjct: 688 EHEVHLRRVKEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRP 747 Query: 1152 TNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTA 1331 TN +RSF+GLA YYRRFVKGF+S+A +T LT + VP VWS ECEE F L +LT+ Sbjct: 748 TNAVEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTST 807 Query: 1332 PILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVF 1511 P+L LP G+ + VY DAS GLG LM+ VIAYASRQL+ HE NYPTHDLE+AAV+F Sbjct: 808 PVLALPEHGEPYSVYTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIF 867 Query: 1512 ALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVV 1691 ALK W+ YLYG K +V+TDH+SL+Y+FTQ LNLRQRRWMEL+ DYD+ I YHP KANV+ Sbjct: 868 ALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPGKANVI 927 Query: 1692 ADALSRK------AGSMESLAHSQVSRRPLAREVQ 1778 DALSRK S+E+L + R L R Q Sbjct: 928 VDALSRKRVGAAPGQSVEALVRATKMYRDLKRYYQ 962 Score = 331 bits (839), Expect = 3e-088 Identities = 177/404 (43%), Positives = 243/404 (59%), Gaps = 1/404 (0%) Frame = +2 Query: 2069 ATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEKIAM 2248 ATKMYRDLK+++ W MKRD+ +VA+C CQ VK EHQ+PGG LQ +PIP++KW+ I M Sbjct: 950 ATKMYRDLKRYYQWVGMKRDVANWVAECDVCQLVKAEHQVPGGVLQSLPIPEWKWDFITM 1009 Query: 2249 DFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPII 2428 DFVVG P + K D+IWVIVDRLTKSAHF+ ++ R G Sbjct: 1010 DFVVGLPVSRTK-DAIWVIVDRLTKSAHFLAIRKN---------------RWSG------ 1047 Query: 2429 SDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWD 2608 E+GT+V + T +HP DGQSERTIQ LEDMLR CV+++ G W Sbjct: 1048 ---------------GAEMGTKVQMSTAYHPQRDGQSERTIQTLEDMLRMCVLDWGGRWA 1092 Query: 2609 SFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKC 2788 L EF+YNNSYQ SI M PFE LYGR CR+P+ W E +G D ++E+L++++ Sbjct: 1093 DHFSLVEFAYNNSYQMSIGMTPFETLYGRPCRTPLCWTQVGERSIYGADYVQETLERIRV 1152 Query: 2789 IQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKV 2968 ++ AQ RK+ Y ++ R+ EF G++V LK++ ++G KLSPRY+GPF++ Sbjct: 1153 LKLNMKEAQDRKRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRI 1212 Query: 2969 LKRVGEVAYELALPPGLSGVHPVFYVSML-KTYHGDGNYIIRWDSVLLDENLSYEEEPVA 3145 ++RVG VAY L L + H VF++SML K H D + + L N++ E PV Sbjct: 1213 VERVGPVAYRLELLDVMRAFHKVFHLSMLRKCLHKDDEVLAKIPED-LQPNMTLETRPVR 1271 Query: 3146 ILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLF 3280 +L+R + +LR ++I IKV W V E TWE EA M+ R+ F Sbjct: 1272 VLERRIKELRRKKIPLIKVLWDCDGVTEETWEPEARMKARFKTWF 1316 >emb|CAB46045.1| (Z97342) retrotransposon like protein [Arabidopsis thaliana] Length = 687 Score = 386 bits (980), Expect(2) = e-164 Identities = 194/413 (46%), Positives = 269/413 (64%), Gaps = 1/413 (0%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+ KMYRDLK+++ W MK+D+ +VA K EHQ+P G LQ +PIP++KW Sbjct: 265 SIHPGSNKMYRDLKRYYHWVGMKKDVARWVA--------KEEHQVPSGMLQNLPIPEWKW 316 Query: 2234 EKIAMDFVVGFPKTI-GKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHG 2410 + I MDFV G P I K++++WV+VDRLTKSAHF+ + AE A+ YI E++RLHG Sbjct: 317 DHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDAAEIIAEKYIDEIVRLHG 376 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 +P+ I+SDR T+FTS FWK + LGTRV+L T +HP TDGQSERTIQ LEDMLRACV++ Sbjct: 377 IPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLD 436 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRES 2770 + G+W+ +L L EF+YNNS+Q+SI M+P+EALYGR R+P+ W E R +G ++ E+ Sbjct: 437 WGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRAGRTPLCWTPVGERRLFGPAVVDET 496 Query: 2771 LDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRY 2950 K+K ++ K AQ R+K Y ++ ++ EF G+ V LK KG F R KL PRY Sbjct: 497 TKKMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLRPRY 556 Query: 2951 IGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLSYE 3130 +GP+KV++RVG VAY+L LPP L H VF+VS L+ + + L EN++ E Sbjct: 557 VGPYKVIERVGAVAYKLDLPPKLDAFHNVFHVSQLRKCLSEQEESMEDVPPGLKENMTVE 616 Query: 3131 EEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLFTDSG 3292 PV I+D+ R + + +K+ W EE TWE E M+ +P F + G Sbjct: 617 AWPVRIMDQMKKGTRGKSMDLLKILWNCGGREEYTWETETKMKANFPEWFKEMG 670 Score = 222 bits (560), Expect(2) = e-164 Identities = 120/278 (43%), Positives = 169/278 (60%) Frame = +3 Query: 1227 VASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGA 1406 +A +T LT + WS+ECE SF +L +LT AP+L LP EG+ + VY DAS GLG Sbjct: 1 MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGC 60 Query: 1407 ALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQY 1586 L+++ +VIAYASRQL+ HE+NYPT+DLE+AAVVFALK W+ YLYG K +++TDH+SL+Y Sbjct: 61 VLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKSLKY 120 Query: 1587 VFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLA 1766 +FTQ LNLRQRRW++L+ DYD+ I YHP KAN V DALSR + ++ ++ ++ L Sbjct: 121 IFTQPELNLRQRRWIKLVADYDLNIAYHPGKANQVVDALSR----LRTVVEAERNQVNLV 176 Query: 1767 REVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLIMFPYKELLGKANEA 1946 + TL + + EV G ++ L +I+ Q DE++ + E Sbjct: 177 NMMGTLHLNALSKEVEPLG---LRAANQADLLSRIRSAQERDEEIKGWAQ----NNKTEY 229 Query: 1947 IIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 G + V G VC P + + IL E H K +H Sbjct: 230 QSSNNGTIVVNGRVCGPNDKALKEEILKEAHQSKFSIH 267 >emb|CAB80961.1| (AL161545) retrotransposon like protein [Arabidopsis thaliana] Length = 687 Score = 386 bits (980), Expect(2) = e-164 Identities = 194/413 (46%), Positives = 269/413 (64%), Gaps = 1/413 (0%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+ KMYRDLK+++ W MK+D+ +VA K EHQ+P G LQ +PIP++KW Sbjct: 265 SIHPGSNKMYRDLKRYYHWVGMKKDVARWVA--------KEEHQVPSGMLQNLPIPEWKW 316 Query: 2234 EKIAMDFVVGFPKTI-GKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHG 2410 + I MDFV G P I K++++WV+VDRLTKSAHF+ + AE A+ YI E++RLHG Sbjct: 317 DHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDAAEIIAEKYIDEIVRLHG 376 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 +P+ I+SDR T+FTS FWK + LGTRV+L T +HP TDGQSERTIQ LEDMLRACV++ Sbjct: 377 IPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLD 436 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRES 2770 + G+W+ +L L EF+YNNS+Q+SI M+P+EALYGR R+P+ W E R +G ++ E+ Sbjct: 437 WGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRAGRTPLCWTPVGERRLFGPAVVDET 496 Query: 2771 LDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRY 2950 K+K ++ K AQ R+K Y ++ ++ EF G+ V LK KG F R KL PRY Sbjct: 497 TKKMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLRPRY 556 Query: 2951 IGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLSYE 3130 +GP+KV++RVG VAY+L LPP L H VF+VS L+ + + L EN++ E Sbjct: 557 VGPYKVIERVGAVAYKLDLPPKLDAFHNVFHVSQLRKCLSEQEESMEDVPPGLKENMTVE 616 Query: 3131 EEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLFTDSG 3292 PV I+D+ R + + +K+ W EE TWE E M+ +P F + G Sbjct: 617 AWPVRIMDQMKKGTRGKSMDLLKILWNCGGREEYTWETETKMKANFPEWFKEMG 670 Score = 222 bits (560), Expect(2) = e-164 Identities = 120/278 (43%), Positives = 169/278 (60%) Frame = +3 Query: 1227 VASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGA 1406 +A +T LT + WS+ECE SF +L +LT AP+L LP EG+ + VY DAS GLG Sbjct: 1 MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGC 60 Query: 1407 ALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQY 1586 L+++ +VIAYASRQL+ HE+NYPT+DLE+AAVVFALK W+ YLYG K +++TDH+SL+Y Sbjct: 61 VLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKSLKY 120 Query: 1587 VFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLA 1766 +FTQ LNLRQRRW++L+ DYD+ I YHP KAN V DALSR + ++ ++ ++ L Sbjct: 121 IFTQPELNLRQRRWIKLVADYDLNIAYHPGKANQVVDALSR----LRTVVEAERNQVNLV 176 Query: 1767 REVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLIMFPYKELLGKANEA 1946 + TL + + EV G ++ L +I+ Q DE++ + E Sbjct: 177 NMMGTLHLNALSKEVEPLG---LRAANQADLLSRIRSAQERDEEIKGWAQ----NNKTEY 229 Query: 1947 IIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 G + V G VC P + + IL E H K +H Sbjct: 230 QSSNNGTIVVNGRVCGPNDKALKEEILKEAHQSKFSIH 267 >dbj|BAA89559.1| (AP001072) Similar to polyprotein. (AF061282) [Oryza sativa] Length = 1021 Score = 575 bits (1467), Expect = e-162 Identities = 287/537 (53%), Positives = 364/537 (67%) Frame = +3 Query: 105 DLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYTSTPVHIIYFL 284 +L++LE D DVI GM WL+ + ++ C ++T+ L + ++ P + Sbjct: 413 NLILLESKDLDVILGMDWLTRHRGVIHCVSRTIKLTNAKGEVVTFQSPVPQKPGISLNQA 472 Query: 285 RAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLDVFPTDLPGMPPDRDIDFCIDLE 464 + V K +E + IVRE+ +VFP DL MPP RDI+F IDL Sbjct: 473 TGEVAVEKTS--------------KKLEDIPIVREYPEVFPDDLTTMPPKRDIEFWIDLA 518 Query: 465 PGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCID 644 GT PI Y M KG+ RPS SPWG+PV+FV+KKD + RMC+D Sbjct: 519 LGTAPIHKRPYRMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVD 578 Query: 645 YKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYR 824 Y+ LN+V +KNKYPLP ID+LFDQL+GA FSKID SGYHQL+IR D+PKTAF Y Sbjct: 579 YRALNEVTIKNKYPLPRIDDLFDQLKGATMFSKIDLRSGYHQLRIREEDIPKTAFIIHYG 638 Query: 825 HYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLE 1004 +E VMSFGLTNAPA FM+LMN + +LD FV++FIDDIL+YSKS +EHE HLR+VLE Sbjct: 639 LFECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVMVFIDDILIYSKSKEEHEQHLRLVLE 698 Query: 1005 MLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVG 1184 L+E +LYAKFSKC+FWL V FLGH+V+ V VDP +E V W P VT VRSF+G Sbjct: 699 KLKEHQLYAKFSKCDFWLKEVQFLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLG 758 Query: 1185 LASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKN 1364 LA YYRRF++ FS +A +T L K+ +WS EC SF++L L +AP+L LP + K+ Sbjct: 759 LAGYYRRFIENFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKD 818 Query: 1365 FIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYG 1544 F VYCDAS GLG +M++ V+AYASRQL+ HE NYPTHDL+LAAVV ALK W+HYL G Sbjct: 819 FQVYCDASRQGLGCVVMQDGKVVAYASRQLRPHEGNYPTHDLKLAAVVHALKIWRHYLIG 878 Query: 1545 VKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKA 1715 +CEVYTDH+SL+Y+FTQ LNLRQRRW+EL+KDYD+ I Y+P KANVVADALSRK+ Sbjct: 879 NRCEVYTDHKSLKYIFTQADLNLRQRRWLELIKDYDMGIHYYPGKANVVADALSRKS 935 Score = 66.7 bits (160), Expect = 1e-008 Identities = 28/44 (63%), Positives = 33/44 (74%) Frame = +2 Query: 2072 TKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGAL 2203 TKMY+DLK+ FWW M+R+I EFVA C CQ+VK EHQ P G L Sbjct: 978 TKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLL 1021 >gb|AAC69377.1| (AC005398) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1328 Score = 572 bits (1459), Expect = e-161 Identities = 313/593 (52%), Positives = 389/593 (64%), Gaps = 16/593 (2%) Frame = +3 Query: 75 VTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYT 254 + G + DL+I + +DVI GM WL LDC+ V+ +P LV++G Sbjct: 366 IQIAGESMPADLIISPVELYDVILGMDWLDHYRVHLDCHRGRVSFERPEG-SLVYQGVRP 424 Query: 255 STPVHIIYFLRAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLDVFPTDLPGMPPD 434 ++ +I ++A+KM+ KGC A+L EF DVF + L G+PP Sbjct: 425 TSGSLVISAVQAEKMIEKGCEAYL--------------------EFEDVFQS-LQGLPPS 463 Query: 435 RDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKK 614 R F I+LEPGT P+S Y MAP + G+PVLFVKK Sbjct: 464 RSDPFTIELEPGTAPLSKAPYRMAPAEMAE------------LKKQLEDLLGAPVLFVKK 511 Query: 615 KDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDV 794 KDGSFR+CIDY+ LN V VKNKYPLP ID L DQL+GA FSKID +SGYH + I DV Sbjct: 512 KDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEADV 571 Query: 795 PKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKE 974 KTAF TRY H+EF+VM FGLTNAPAAFM LMN + + LD FVI+FIDDILVYSKS +E Sbjct: 572 RKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEE 631 Query: 975 HE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPT 1154 HE HLR V+E LRE+KL+AK SKC FW + FLGH+VS + V VDP KIE ++ W PT Sbjct: 632 HEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPT 691 Query: 1155 NVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAP 1334 N T +RSF+GLA YYRRFVKGF+S+A +T LT + VP VWS ECEE F L +LT+ P Sbjct: 692 NATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTP 751 Query: 1335 ILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFA 1514 +L LP G+ ++VY DAS GLG LM+ VIAYASRQL+ HE NYPTHDLE+AAV+FA Sbjct: 752 VLALPEHGEPYMVYTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFA 811 Query: 1515 LKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVA 1694 LK W+ YLYG +V+TDH+SL+Y+FTQ LNLRQR+WMEL+ DYD+ I YHP KANVVA Sbjct: 812 LKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPGKANVVA 871 Query: 1695 DALSRK------AGSMESLAHS-------QVSRRPLAREVQTLANDLMRLEV---NEKGG 1826 DALS K S+E+L V+R PL E A+ L R+ + ++G Sbjct: 872 DALSHKRVGAAPGQSVEALVSEIGALRLCAVAREPLGLEAVDRADLLTRVRLAQEKDEGL 931 Query: 1827 FLAYVEERS 1853 AY E S Sbjct: 932 IAAYKAEGS 940 Score = 365 bits (927), Expect = 2e-098 Identities = 183/385 (47%), Positives = 257/385 (66%), Gaps = 1/385 (0%) Frame = +2 Query: 2126 DIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEKIAMDFVVGFPKTIGKYDSIWVI 2305 D+ +VA+C CQ VK EHQ+PGG LQ +PIP++KW+ I +DFVVG P + K D+IWVI Sbjct: 942 DVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLPVSRTK-DAIWVI 1000 Query: 2306 VDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTKFTSMFWKTLHEEL 2485 VDRLTKSAHF+ ++ T A AK Y+SE+++LHGVP+ I+SDR +KFTS FW+ E+ Sbjct: 1001 VDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEM 1060 Query: 2486 GTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFLPLAEFSYNNSYQSSID 2665 GT+V + T +HP T GQSERTIQ LEDMLR CV+++ GHW L L EF+YNNSY +SI Sbjct: 1061 GTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASIG 1120 Query: 2666 MAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKCIQEKHLAAQSRKKKYVVQK 2845 MAPFEALY R CR+P+ E +G D ++E+ ++++ ++ AQ R++ Y ++ Sbjct: 1121 MAPFEALYERPCRTPLCLTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQRSYADKR 1180 Query: 2846 VRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVLKRVGEVAYELALPPGLSG 3025 R+ EF G++V LK++ ++G KLSPRY+GPF++++RVG VAY L LP + Sbjct: 1181 RRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERVGPVAYRLELPDVMRA 1240 Query: 3026 VHPVFYVSML-KTYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVPKLRSREIASIKV 3202 H VF+VSML K H D + + L N++ E PV +L+R + +LR ++I IKV Sbjct: 1241 FHKVFHVSMLRKCLHKDDEVLAKIPED-LQPNMTLEARPVRVLERRIKELRRKKIPLIKV 1299 Query: 3203 QWKNRPVEESTWEKEADMQERYPHLF 3280 W V + TWE EA M+ R+ F Sbjct: 1300 LWDCDGVTKETWEPEARMKARFKKWF 1325 >gb|AAD17358.1| (AF128395) contains similarity to reverse transcriptase (Pfam: PF00078, Score=137.6, E=2.3e-37, N=1) and CCHC-type zinc fingers (Pfam: PF00098, Score=18.3, E=0.024, N=2) [Arabidopsis thaliana] Length = 901 Score = 471 bits (1198), Expect(2) = e-147 Identities = 285/658 (43%), Positives = 359/658 (54%) Frame = +3 Query: 87 GSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYTSTPV 266 G + DL+I + +DVI M WL LDC+ V+ +P LV++G Sbjct: 283 GESMPADLIISPVELYDVILRMDWLDLYRVHLDCHCGRVSFERPEGR-LVYQG------- 334 Query: 267 HIIYFLRAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLDVFPTDLPGMPPDRDID 446 +KM+ KGC A+L I + ESV V G+PP R Sbjct: 335 -------VEKMIEKGCEAYLV-------TISTPESVGQVA-----------GLPPSRSDP 369 Query: 447 FCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGS 626 F I+LEPGT +S Y MAP KGF RPS SPWG PVLFVKKKD S Sbjct: 370 FMIELEPGTASLSKAPYRMAPAEMAKVKKQLDDLLGKGFIRPSTSPWGEPVLFVKKKDWS 429 Query: 627 FRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTA 806 FR+CIDY+ LN+V +K KYPLP I+ L DQL+GA FSKIDF+SGYHQ+ I V KTA Sbjct: 430 FRLCIDYRGLNQVTMKKKYPLPRINELLDQLRGATCFSKIDFTSGYHQIPIAEAYVRKTA 489 Query: 807 FWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*H 986 F TRY H+EF+VM FGLTNAPAAFM LMN + + +LD FVI+FIDDILVYSKS +EHE H Sbjct: 490 FKTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVH 549 Query: 987 LRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT* 1166 L V+E L E+KL+AK SKC FW + FLGH+ S V VDP KIE ++ W +PTN T Sbjct: 550 LMRVMEKLWEQKLFAKLSKCSFWQREMGFLGHIFSAKGVSVDPEKIEAIRDWPKPTNATE 609 Query: 1167 VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNL 1346 +RSF+GLA YYRRFVKGF+S+A ++ LT ++VP VWS +CEE F L +L + P+L Sbjct: 610 IRSFLGLAGYYRRFVKGFASMAQPMSKLTGKNVPFVWSLDCEEGFMSLKEMLMSTPVL-- 667 Query: 1347 PVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQW 1526 A W AL VIAY SRQL+ HE NYPTHDLE+ AV+FALK W Sbjct: 668 -----------IARAW---RALHGRGKVIAYGSRQLRKHEGNYPTHDLEMVAVIFALKIW 713 Query: 1527 KHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALS 1706 + YLYG K + I YHP KANVV DALS Sbjct: 714 RSYLYGGK----------------------------------VQIAYHPGKANVVTDALS 739 Query: 1707 RKAGSMESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQF 1886 RK A S + L E+ D +RL + ++ L +++ Q Sbjct: 740 RKRVG----AAPGQSVKALVSEI-----DALRLCAVAREPLGLEAVDQVDLLSRVRLAQE 790 Query: 1887 NDEKLIMFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 DE LI E E G + V G VC+P+ ++ + IL+E H+ +H Sbjct: 791 KDEGLIAASKAE----GFEYQFVANGTILVHGRVCVPKDKELRQEILSEAHASMFSIH 844 Score = 80.8 bits (196), Expect(2) = e-147 Identities = 34/59 (57%), Positives = 44/59 (73%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFK 2230 S HPGATKMYRDLK+++ W MKRD+ +V +C CQ VK EHQ+P LQ +PIP++K Sbjct: 842 SIHPGATKMYRDLKRYYQWVGMKRDVANWVEECDVCQLVKIEHQVPSSLLQSLPIPEWK 900 >gb|AAD37020.1|AC007730_2 (AC007730) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 949 Score = 516 bits (1315), Expect = e-144 Identities = 268/495 (54%), Positives = 336/495 (67%), Gaps = 1/495 (0%) Frame = +3 Query: 54 KVYRSCLVTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPL 233 ++ R V G N DL+I+ + DVI GM WL +DC+ + + + L Sbjct: 14 RLVRGISVVVNGVNMPADLIIVPLKKHDVILGMDWLGKYKGHIDCHRERIQFERDEGM-L 72 Query: 234 VWEGDYTSTPVHIIYFLRAKKMVSKGCLAFLAHLID-DTTQIPSIESVSIVREFLDVFPT 410 ++G T++ +I ++A++M+ KGC A+LA + + ++ + IV EF DVF Sbjct: 73 KFQGIRTTSGSLVISAIQAERMLGKGCEAYLATITTKEVGASAELKDILIVNEFSDVFAA 132 Query: 411 DLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWG 590 + G+PPDR F I+LEPGT PIS Y MAP +KGF RPS+SPWG Sbjct: 133 -VSGVPPDRSDPFTIELEPGTTPISKAPYRMAPAEMAELKKQLEELLAKGFIRPSSSPWG 191 Query: 591 SPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQ 770 +PVLFVKKKDGSFR+CIDY+ LNKV VKNKYPLP ID L DQL GA FSKID +SGYHQ Sbjct: 192 APVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQ 251 Query: 771 LKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDIL 950 + I TDV KTAF TRY H+EF+VM FGLTNAPAAFM +MNG+ + +LD FVI+FIDDIL Sbjct: 252 IPIEPTDVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDIL 311 Query: 951 VYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEV 1130 V+SKS + H+ HLR VLE LRE +L+AK SK FW V FLGHV+S V VDP KI Sbjct: 312 VHSKSWEAHQEHLRAVLERLREHELFAKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRS 371 Query: 1131 VKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKL 1310 +K W RP N T +RSF+GLA YYRRFV F+S+A LT LT + WSDECE+SF +L Sbjct: 372 IKEWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLEL 431 Query: 1311 NTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDL 1490 +L AP+L LP EG+ + VY DAS GLG LM++ +VIAYASRQL+ HE+NYPTHDL Sbjct: 432 KAMLINAPVLVLPEEGEPYTVYTDASIVGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDL 491 Query: 1491 ELAAVVFALKQWKHYL 1538 E+AAVVFALK W+ YL Sbjct: 492 EMAAVVFALKIWRSYL 507 Score = 388 bits (987), Expect(2) = e-107 Identities = 189/383 (49%), Positives = 262/383 (68%), Gaps = 1/383 (0%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+ KMYRDLK+++ W M++D+ +VA+CP CQ VK EHQ+P G LQ +PI ++KW Sbjct: 565 SIHPGSNKMYRDLKRYYHWVGMRKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPISEWKW 624 Query: 2234 EKIAMDFVVGFPKTI-GKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHG 2410 + I MDFV P I K++++WV+VDRLTKSAHF+ + AE A+ YI E++RLHG Sbjct: 625 DHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIMRLHG 684 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 +P+ I+SDR T+FTS FW + LGTRV+L T +HP TDGQSERTIQ LEDMLRACV++ Sbjct: 685 IPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLD 744 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRES 2770 + G+W+ +L L EF+YNNS+Q+SI M+P+EALYGR CR+P+ W E R +G ++ E+ Sbjct: 745 WGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDET 804 Query: 2771 LDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRY 2950 +++K ++ K AQ R+K Y ++ ++ EF G+ V LK KG F R KLSPRY Sbjct: 805 TERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRY 864 Query: 2951 IGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLSYE 3130 +GP+KV++RVG VAY+L LPP L+ H VF+VS L+ Y D + L EN++ E Sbjct: 865 VGPYKVIERVGAVAYKLDLPPKLNVFHNVFHVSQLRKYLSDQEESVEDIPPGLKENMTVE 924 Query: 3131 EEPVAILDREVPKLRSREIASIKV 3202 PV I+DR R + +KV Sbjct: 925 AWPVRIMDRMSKGTRGKSRDLLKV 948 Score = 28.6 bits (62), Expect(2) = e-107 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = +3 Query: 1926 LGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 L E G + V G VC+P + + IL E H K +H Sbjct: 523 LNNKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIH 567 >dbj|BAA78625.1| (AB028236) Pol (reverse transcriptase-RNase H-integrase) [Tricholoma nauseosum] Length = 1057 Score = 326 bits (828), Expect(2) = e-142 Identities = 201/560 (35%), Positives = 308/560 (54%), Gaps = 16/560 (2%) Frame = +3 Query: 381 VREFLDVFPTD-LPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSK 557 + EF DVF + +P + D I+L PG P S Y ++P + Sbjct: 62 LHEFEDVFSKESFDSLPARKPWDHAIELTPGATPSSCKVYPLSPEEQRQLDQFIDEHLAS 121 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 G RPS SP SP FVKKKDGS R DY++LN + VKN+YPLP I L +QL GA F Sbjct: 122 GRIRPSKSPMASPFFFVKKKDGSLRPVQDYRRLNNITVKNRYPLPLISELVNQLHGARYF 181 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKP-YL 914 +K+D GY+ ++I+ D K AF T +E LVM FGLTN+PA F ++MN I L Sbjct: 182 TKLDVRWGYNNVRIKEGDEWKAAFRTNRGLFELLVMFFGLTNSPATFQTMMNDIFHDLIL 241 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 + V +++DDIL++++ +EH R+VLE LR KLY KCEF + +LG ++S+ Sbjct: 242 EGVVCIYLDDILIFTRMVEEHRRITRLVLERLRRYKLYLHQDKCEFERTKIEYLGLIISE 301 Query: 1095 D*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSV 1274 V +DP K+ V +W PTN V+SF+G ++YRRF+K FS A L +LT + Sbjct: 302 GQVEMDPIKVNRVTAWPTPTNKKEVQSFLGFINFYRRFIKDFSHHARLLFDLTGKEAWR- 360 Query: 1275 WSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK------NVIA 1436 W + +E+F+KL ++T+APIL + + F V D+S + +GA L ++ + +A Sbjct: 361 WDNAQQEAFEKLKEMVTSAPILTFADDLRPFRVEADSSDFAMGAVLSQQSPEDQKWHPVA 420 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV--KCEVYTDHRSLQYVFTQKYLN 1610 + S+ L ERNY HD E+ A++ AL++W+H+L G K E++TDH++L+Y T K LN Sbjct: 421 FYSKSLSAVERNYEIHDKEMLAIMRALEEWRHFLEGAQHKVEIWTDHKNLEYFMTAKKLN 480 Query: 1611 LRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQTLAN 1790 RQ RW L +D ++ + P ++ DALSR+A + +Q + L Sbjct: 481 RRQARWSLYLSRFDFSLHHRPGRSMGKTDALSRRADHGDGSGDNQ--------NIVLLQP 532 Query: 1791 DLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFN-DEKLIMFPYKELLGKANEAI-----I 1952 DL + E G EER D E ++ KEL + ++ Sbjct: 533 DLFTIRALE--GIAPQGEERDILRDICHANCSGLHEDVVARAVKELRKGSTLSLRAAEWA 590 Query: 1953 DEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 ++ +L + + +P D+ + I+++ H ++ H Sbjct: 591 EKEDLLYFRDRIYVPNDPDLRRRIISQHHDSQIAGH 626 Score = 205 bits (517), Expect(2) = e-142 Identities = 132/402 (32%), Positives = 205/402 (50%), Gaps = 12/402 (2%) Frame = +2 Query: 2051 LSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFK 2230 ++ HPG K +++WW +M R I ++ C C K + P G L +P+P+ + Sbjct: 623 IAGHPGRWKTLELTSRNYWWPQMSRLIGQYCRTCDLCLCTKVPRRKPIGELHPLPVPESR 682 Query: 2231 WEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHG 2410 W+ +++DFVV P++ G +D++ VD + K AHFIP T +A A+LY+ V +LHG Sbjct: 683 WDVVSVDFVVELPESNG-FDAVMCTVDSVGKRAHFIPTHTTVSALGAARLYLHHVWKLHG 741 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 +P +SDR +F + F + L+ LG ++ T +HP TDGQ+ER Q LE +R V E Sbjct: 742 LPGAFLSDRGPQFMAEFTRELYRLLGIKLLASTAYHPQTDGQTERVNQELEQYIRLFVNE 801 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCR---SPIEWFDAFEVRPWGTDLL 2761 WD LPLAEF YNN +S PF GR R P + E T+ + Sbjct: 802 RQDDWDDLLPLAEFGYNNHVHASTQQTPFLLDTGRHPRMGFEPRQTPSHIETVNEFTERM 861 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLS 2941 R+SL++ + K A + Y + ++ G++V L S + KL+ Sbjct: 862 RDSLEEARAALAK--AKDDMARFYNQRHSPTPQYKVGDRVYLDSSDISTTR---PSKKLA 916 Query: 2942 PRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENL 3121 R++GPF ++K VG AY L LP +S +HPVF+V L D L Sbjct: 917 HRFLGPFPIVKCVGTHAYRLRLPASMSRLHPVFHVVKLLPAPPD----------LFPGRH 966 Query: 3122 SYEEEPVAILDREVPKLRSREIASIK---------VQWKNRPVEESTWEKEADM 3256 S+ P +++ E P+ + I + V WK EE++W +E+D+ Sbjct: 967 SHPPPPPTVIEGE-PQYEVKSILDSRLHRGKLQYLVHWKGYGYEENSWVEESDI 1019 >dbj|BAA90795.1| (AP001168) Similar to 22 kDa kafirin cluster; Ty3-Gypsy type (AF061282) [Oryza sativa] Length = 963 Score = 475 bits (1209), Expect(2) = e-137 Identities = 220/412 (53%), Positives = 297/412 (71%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+TKMY+DL++ FWW+ MKR+I E+VA C CQ+VK EHQ P G LQ + IP++KW Sbjct: 543 SIHPGSTKMYQDLRERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKW 602 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 E+I MDF+ G P+T +DSIWVIVDRLTK AHFIPVK TY+ + A+LY++ ++ LHGV Sbjct: 603 EEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGV 662 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SDR ++FTS FWK L EE+G++++ T +HP TDGQ+ER Q+LEDMLRAC ++F Sbjct: 663 PKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDF 722 Query: 2594 AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESL 2773 G WD LP AEFSYNNSYQ+S+ MAP+EALYGR+CR+P+ W E + +GTD+LRE+ Sbjct: 723 GGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAE 782 Query: 2774 DKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYI 2953 +KVK IQE+ AQSR K Y + RD F EG+ V L+V+P++GV F +GKL+PR++ Sbjct: 783 EKVKVIQERLRVAQSRHKSYADNRHRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFV 842 Query: 2954 GPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLSYEE 3133 GP+K+ R GEVAY+L LP L+GVH VF+VS LK + + + E+L+Y E Sbjct: 843 GPYKIASRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYVE 902 Query: 3134 EPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLFTDS 3289 +P+ IL+ + R+R I KVQW N EESTWE+E +++ +PHLF S Sbjct: 903 KPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLFASS 954 Score = 43.4 bits (100), Expect(2) = e-137 Identities = 35/122 (28%), Positives = 54/122 (43%), Gaps = 1/122 (0%) Frame = +3 Query: 1695 DALSRKAGSMESLAHSQVSRRPLAREVQTLANDLMRLEVNEKG-GFLAYVEERSSFLDKI 1871 DALSRK + R L E L + RL + G GF+A +E + + +D++ Sbjct: 432 DALSRKGYC------NATEGRQLPLE---LCKEFERLNLGIVGRGFVAALEAKPTLIDQV 482 Query: 1872 KGKQFNDEKLIMFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKV 2051 + Q ND + GKA + DE G + + +C+P D+ IL E H Sbjct: 483 REAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAILKEAHDTLY 542 Query: 2052 CLH 2060 +H Sbjct: 543 SIH 545 >gb|AAD17356.1| (AF128395) contains similarity to retrovirus-related polyproteins [Arabidopsis thaliana] Length = 611 Score = 350 bits (888), Expect(2) = e-126 Identities = 185/409 (45%), Positives = 258/409 (62%), Gaps = 1/409 (0%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPGATKMYRDLK+++ W MKRD+ +V +C CQ VK EHQ+ G LQ +PIP++KW Sbjct: 183 SIHPGATKMYRDLKRYYQWVGMKRDVGNWVEECDVCQLVKIEHQVSGSLLQSLPIPEWKW 242 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 + I MDFVVG P + K D+IWVIVDRLTKSAHF+ ++ T A AK Y+SE+++LHGV Sbjct: 243 DFITMDFVVGLPVSRTK-DAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGV 301 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P+ I+SDR +KFTS FW+ E+GT+V + T +HP TDGQSERTIQ LEDMLR CV+++ Sbjct: 302 PVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDW 361 Query: 2594 AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESL 2773 GHW L L EF+YNNSYQ+SI MAPFE LYGR CR+ + W E +G D ++E Sbjct: 362 RGHWADHLSLVEFAYNNSYQASIGMAPFEVLYGRPCRT-LCWTQVGERSIYGADYVQEIT 420 Query: 2774 DKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYI 2953 ++++ ++ AQ+R++ Y ++ ++ EF G+ V + G ++ Sbjct: 421 ERIRVLKLNMKEAQNRQRSYADKRRKELEFEVGDSV-------------SQDGHVA---- 463 Query: 2954 GPFKVLKRVGEVAYELALPPGLSGVHPVFYVSML-KTYHGDGNYIIRWDSVLLDENLSYE 3130 + +RVG VA+ L L + H VF+VSML K H D + + L N++ E Sbjct: 464 ---RSEQRVGPVAFRLELSDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPED-LQPNMTLE 519 Query: 3131 EEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLF 3280 PV +L+R + +LR ++I IKV V E TWE EA ++ R+ F Sbjct: 520 ARPVRVLERRIKELRRKKIPLIKVLRNCDGVTEETWEPEARLKARFKKWF 569 Score = 131 bits (326), Expect(2) = e-126 Identities = 85/216 (39%), Positives = 116/216 (53%), Gaps = 2/216 (0%) Frame = +3 Query: 1413 MKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVF 1592 M+ VIAY SRQLK HE NYPTHDLE+AAV +TDH+SL+Y+F Sbjct: 1 MQRGKVIAYGSRQLKKHEGNYPTHDLEMAAV------------------FTDHKSLKYIF 42 Query: 1593 TQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLARE 1772 TQ LNLR RRWM+L+ DYD+ I YHP KANVV DALSRK +V P + Sbjct: 43 TQLELNLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRK----------RVGAAP-GQS 91 Query: 1773 VQTLANDL--MRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLIMFPYKELLGKANEA 1946 V+TL ++ +RL + +++ L +++ Q DE LI E E Sbjct: 92 VETLVIEIGALRLCAVAREPLGLEAVDQTDLLSRVQLAQEKDEGLIAASKAE----GFEY 147 Query: 1947 IIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 G + V G VC+P+ ++ + IL+E H+ +H Sbjct: 148 QFAANGTILVHGRVCVPKDKELRQEILSEAHASMFSIH 185 >emb|CAB77942.1| (AL161507) putative reverse transcriptase [Arabidopsis thaliana] Length = 611 Score = 350 bits (888), Expect(2) = e-126 Identities = 185/409 (45%), Positives = 258/409 (62%), Gaps = 1/409 (0%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPGATKMYRDLK+++ W MKRD+ +V +C CQ VK EHQ+ G LQ +PIP++KW Sbjct: 183 SIHPGATKMYRDLKRYYQWVGMKRDVGNWVEECDVCQLVKIEHQVSGSLLQSLPIPEWKW 242 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 + I MDFVVG P + K D+IWVIVDRLTKSAHF+ ++ T A AK Y+SE+++LHGV Sbjct: 243 DFITMDFVVGLPVSRTK-DAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGV 301 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P+ I+SDR +KFTS FW+ E+GT+V + T +HP TDGQSERTIQ LEDMLR CV+++ Sbjct: 302 PVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDW 361 Query: 2594 AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESL 2773 GHW L L EF+YNNSYQ+SI MAPFE LYGR CR+ + W E +G D ++E Sbjct: 362 RGHWADHLSLVEFAYNNSYQASIGMAPFEVLYGRPCRT-LCWTQVGERSIYGADYVQEIT 420 Query: 2774 DKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYI 2953 ++++ ++ AQ+R++ Y ++ ++ EF G+ V + G ++ Sbjct: 421 ERIRVLKLNMKEAQNRQRSYADKRRKELEFEVGDSV-------------SQDGHVA---- 463 Query: 2954 GPFKVLKRVGEVAYELALPPGLSGVHPVFYVSML-KTYHGDGNYIIRWDSVLLDENLSYE 3130 + +RVG VA+ L L + H VF+VSML K H D + + L N++ E Sbjct: 464 ---RSEQRVGPVAFRLELSDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPED-LQPNMTLE 519 Query: 3131 EEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLF 3280 PV +L+R + +LR ++I IKV V E TWE EA ++ R+ F Sbjct: 520 ARPVRVLERRIKELRRKKIPLIKVLRNCDGVTEETWEPEARLKARFKKWF 569 Score = 131 bits (326), Expect(2) = e-126 Identities = 85/216 (39%), Positives = 116/216 (53%), Gaps = 2/216 (0%) Frame = +3 Query: 1413 MKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVF 1592 M+ VIAY SRQLK HE NYPTHDLE+AAV +TDH+SL+Y+F Sbjct: 1 MQRGKVIAYGSRQLKKHEGNYPTHDLEMAAV------------------FTDHKSLKYIF 42 Query: 1593 TQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLARE 1772 TQ LNLR RRWM+L+ DYD+ I YHP KANVV DALSRK +V P + Sbjct: 43 TQLELNLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRK----------RVGAAP-GQS 91 Query: 1773 VQTLANDL--MRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLIMFPYKELLGKANEA 1946 V+TL ++ +RL + +++ L +++ Q DE LI E E Sbjct: 92 VETLVIEIGALRLCAVAREPLGLEAVDQTDLLSRVQLAQEKDEGLIAASKAE----GFEY 147 Query: 1947 IIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 G + V G VC+P+ ++ + IL+E H+ +H Sbjct: 148 QFAANGTILVHGRVCVPKDKELRQEILSEAHASMFSIH 185 >dbj|BAA90794.1| (AP001168) Similar to 22 kDa kafirin cluster; Ty3-Gypsy type (AF061282) [Oryza sativa] Length = 607 Score = 454 bits (1155), Expect = e-125 Identities = 211/408 (51%), Positives = 289/408 (70%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+TKMY+D+K +FWW+ MKRD+ E+VA C CQ+VK EHQ P G LQ +PIP++KW Sbjct: 198 SIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLPIPEWKW 257 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 E+I MDF+ P+T YDSIWVIVDRLTKSAHF+PVK T++ +K A+LY++ V+ G Sbjct: 258 EEIGMDFITDLPRTPSGYDSIWVIVDRLTKSAHFVPVKTTFDGKKLAELYMTHVVCRFGC 317 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SDR T+FTS FWK LHE LGT ++ T +HPHTDGQ+ER Q+LEDMLRAC ++F Sbjct: 318 PKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPHTDGQTERVNQILEDMLRACALDF 377 Query: 2594 AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESL 2773 G WD LP AEFSYNNSYQ+SI M+P EA++GR+CR+P+ W + E +G D+L+ + Sbjct: 378 EGTWDRCLPYAEFSYNNSYQASIKMSPNEAMFGRKCRTPLCWNEVGEALVFGPDILKSAE 437 Query: 2774 DKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYI 2953 ++VK I+E+ AQSR+K Y + RD EF +G+ V L+VSP++G+ FG KL+PRYI Sbjct: 438 EQVKLIRERLKTAQSRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSSKLAPRYI 497 Query: 2954 GPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLSYEE 3133 GP+ + R GEVAY+L LP GL+ VH VF+VS LK + ++ L+ NL+Y+E Sbjct: 498 GPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELERNLTYKE 557 Query: 3134 EPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHL 3277 P+ +L+ + R + I KVQW N +E+TWE+E ++ +P L Sbjct: 558 RPIKVLEETERQTRRKTIKFYKVQWSNHSEDEATWEREDLLRAEFPEL 605 Score = 195 bits (491), Expect = 2e-047 Identities = 97/155 (62%), Positives = 120/155 (76%) Frame = +3 Query: 1320 LTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELA 1499 LTTAP+L LP K+F ++ DAS GLG LM+E+ V+AYASRQL+ HE NYPTHDLELA Sbjct: 5 LTTAPVLTLPDIRKDFEIFYDASRQGLGCVLMQERKVVAYASRQLRPHEVNYPTHDLELA 64 Query: 1500 AVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEK 1679 AVV ALK W+HYL G +CEVYTDH+SL+Y+FTQ LN+RQRRW+EL+KDYD+ I YHP K Sbjct: 65 AVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHYHPGK 124 Query: 1680 ANVVADALSRKAGSMESLAHSQVSRRPLAREVQTL 1784 ANVVADALS KA ++A + + L RE++ L Sbjct: 125 ANVVADALSHKAYC--NIAQIRPDQDRLCRELEKL 157 >gb|AAD25146.1|AC006420_1 (AC006420) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 899 Score = 257 bits (650), Expect(2) = e-115 Identities = 171/428 (39%), Positives = 220/428 (50%), Gaps = 3/428 (0%) Frame = +3 Query: 777 IRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVY 956 + TDV KTAF TRY H+EF+VM FGLTNAPAAFM +MNG+ + +LD FVI+FIDDILVY Sbjct: 283 LEPTDVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVY 342 Query: 957 SKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVK 1136 SKS + H+ HLR VLE LRE +L+AK SKC FW Sbjct: 343 SKSWEAHQEHLRAVLERLREHELFAKLSKCSFW--------------------------- 375 Query: 1137 SWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNT 1316 R K F + + LTN +P EE + T Sbjct: 376 --------------------QRSCEKSFLELKAMLTNAPVLVLP-------EEG--EPYT 406 Query: 1317 LLTTAPILNLP---VEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHD 1487 + T A I+ L ++ + I Y W EKN YPTHD Sbjct: 407 VYTDASIVGLGCVLMQKGSVIAYASRQLW------KHEKN---------------YPTHD 445 Query: 1488 LELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILY 1667 LE+AAVVFALK W+ YLYG K ++YTDH+SL+Y+F Q LNLRQRRWMEL+ DYD+ I Y Sbjct: 446 LEMAAVVFALKIWRSYLYGAKVQIYTDHKSLKYIFIQPELNLRQRRWMELVADYDLDIAY 505 Query: 1668 HPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEE 1847 HP KAN VADALSR+ +E+ SQV L + TL + + EV G A + Sbjct: 506 HPGKANQVADALSRRRSEVEA-ERSQVD---LVNMMGTLHVNALSKEVESLGLGAA---D 558 Query: 1848 RSSFLDKIKGKQFNDEKLIMFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTIL 2027 ++ L +I+ Q DE++ + L E G + V G VC+P + + IL Sbjct: 559 QADLLSRIRLAQERDEEIKGW----ALNNKTEYQTSNNGTIVVNGRVCVPNDRALKEEIL 614 Query: 2028 TEVHSFKVCLH 2060 E H K +H Sbjct: 615 REAHQSKFSIH 625 Score = 184 bits (463), Expect(2) = e-115 Identities = 124/367 (33%), Positives = 173/367 (46%), Gaps = 3/367 (0%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+ KMYRDLK+++ W Sbjct: 623 SIHPGSNKMYRDLKRYYHW----------------------------------------- 641 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVI---VDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 VG K + + WV +L K+ H +P + N Sbjct: 642 --------VGMKKDVAR----WVAKCPTCQLVKAEHQVPSGLLQN--------------- 674 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 LPI + T F + LGTRV+L T +HP TDGQSERTIQ LEDMLRACV Sbjct: 675 ----LPIPEWKWDHITMDF--AFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACV 728 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLR 2764 +++ G+W+ +L LA LYGR CR+P+ W E R +G ++ Sbjct: 729 LDWGGNWEKYLTLA-------------------LYGRACRTPLCWTPVGERRLFGPTIVD 769 Query: 2765 ESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSP 2944 E+ +++K ++ K A R+K Y ++ ++ EF G+ V LK KG F R KLSP Sbjct: 770 ETTERMKFLKIKLKEAHDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSP 829 Query: 2945 RYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLS 3124 RY+GP+KV++RVG VAY+L LPP L+ H VF+VS L+ D + L EN++ Sbjct: 830 RYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSDQEESVEDVPPGLKENMT 889 Query: 3125 YEEEPVAILD 3154 E PV I+D Sbjct: 890 VEAWPVRIMD 899 >gb|AAD13304.1| (AF119040) polyprotein [Lycopersicon esculentum] Length = 1542 Score = 407 bits (1034), Expect = e-111 Identities = 211/473 (44%), Positives = 301/473 (63%), Gaps = 5/473 (1%) Frame = +3 Query: 294 KMVSKGCLAFLAHLI----DDTTQIPSIESVSIVREFLDVFPTDLPG-MPPDRDIDFCID 458 K + KG LA L+ D ++P + +++++ DV P +LP +PP RDID I+ Sbjct: 547 KGLKKGDETILAALVEIKPDVKMEVPDCVA-ELLKQYADVMPPELPKKLPPRRDIDHKIE 605 Query: 459 LEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMC 638 L PGT + Y MAP G +PS +P+G+PVLF KK+DG+ RMC Sbjct: 606 LLPGTVAPAQAPYRMAPKELVELRKQLNELLDAGLIQPSKAPYGAPVLFQKKQDGTMRMC 665 Query: 639 IDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTR 818 +DY+ LNK +KNKY +P + +L D+L AC F+K+D +GY Q++I D PKT TR Sbjct: 666 VDYRALNKATIKNKYSVPLVQDLMDRLSKACWFTKLDLRAGYWQVRIAEGDEPKTTCVTR 725 Query: 819 YRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIV 998 Y YEFLVM FGLTNAPA F +LMN +L YLD FV++++DDI++YS++ +EH HL +V Sbjct: 726 YGSYEFLVMPFGLTNAPATFCNLMNNVLFDYLDDFVVVYLDDIVIYSRTLEEHVNHLSLV 785 Query: 999 LEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSF 1178 L LR+ LY K KCEF + FLGH+VSK+ V +DP K++ + W+ P +V +RSF Sbjct: 786 LSQLRKYTLYVKMEKCEFAQQEIKFLGHLVSKNQVRMDPKKVQAIVDWQAPRHVKDLRSF 845 Query: 1179 VGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEG 1358 +GLA+YYR+F+ G+S A+ LT+L K+ VWS++CE++FQ L + + PIL LP Sbjct: 846 LGLANYYRKFIAGYSKKAASLTDLLKKDAKWVWSEQCEKAFQNLKNAIASEPILKLPDFE 905 Query: 1359 KNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYL 1538 F V+ DAS +G L++E + +A+ SR+L E+ Y TH+ E+ AVV L+ W+ YL Sbjct: 906 LPFEVHTDASDKAIGGVLVQEGHPVAFESRKLNDAEQRYSTHEKEMVAVVHCLQVWRVYL 965 Query: 1539 YGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRK 1712 G + V TD+ + + TQK L+ +Q RW E L +YD + P K N VADALSRK Sbjct: 966 LGTRFVVRTDNVANTFFKTQKKLSPKQARWQEFLAEYDFMWEHKPGKHNQVADALSRK 1023 Score = 249 bits (629), Expect = 1e-063 Identities = 151/399 (37%), Positives = 217/399 (53%), Gaps = 7/399 (1%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 HPG +M L + ++W +M+ DI +V C CQ K E + G LQ +PIP+ W Sbjct: 1106 HPGVERMLALLSRVYFWPKMEDDIEAYVKTCHVCQVDKTERKKEAGLLQPLPIPERPWLS 1165 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 ++MDF+ GFPK GK SI V+VDR +K + FI ++E A+L+ VI+ GVP Sbjct: 1166 VSMDFISGFPKVDGKA-SIMVVVDRFSKYSVFIAAPELCSSEVAAELFYKHVIKYFGVPA 1224 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I+SDR T+FT FW L +GT + T HP TDGQ+ER +LE+ LR V Sbjct: 1225 DIVSDRDTRFTGRFWTALFNMMGTELKFSTANHPQTDGQTERINHLLEEYLRHYVTASQR 1284 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVR--PWGTDLLRESL 2773 +W L A+F YN S+ +M+PFE + G++ +P++ + P + R+ L Sbjct: 1285 NWVELLDTAQFCYNLHKSSATEMSPFEIVLGKQPMTPLDVAKSKNQGKCPAAYRVARDRL 1344 Query: 2774 DKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPM--KGVMWFGKRGKLSPR 2947 + + Q+ AQ R KKY Q R EF G++VLLK++P K ++ + L P+ Sbjct: 1345 EMLSEAQDSLRKAQQRMKKYADQHRRSVEFSVGDKVLLKLTPQIWKQIVSKTRHRGLIPK 1404 Query: 2948 YIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENL-- 3121 Y GPF+V+KRVGEVAY L LP L +HP F+VS LK Y D + R S ++ Sbjct: 1405 YDGPFEVVKRVGEVAYRLKLPERLK-IHPTFHVSFLKPYFADEDDPDRNRSKRAPPSVPT 1463 Query: 3122 SYEEEPVAILDREVPKLRSREI-ASIKVQWKNRPVEESTWEKEADM 3256 Y+ E ILD V + V WK + ++ WEK D+ Sbjct: 1464 QYDAEIEKILDHRVLGTSKKNTKTEFLVHWKGKSAADAVWEKAKDL 1509 >gb|AAA35339.1| (M38526) Tf1 protein [Schizosaccharomyces pombe] Length = 1330 Score = 253 bits (639), Expect(2) = e-110 Identities = 169/577 (29%), Positives = 282/577 (48%), Gaps = 15/577 (2%) Frame = +3 Query: 330 HLIDDTTQIPSI----ESVSIVREFLDVFP-TDLPGMP-PDRDIDFCIDLEPGTRPISIP 491 H + ++ +I E I +EF D+ T+ +P P + ++F ++L + I Sbjct: 354 HTLSQMNKVSNIVKEPELPDIYKEFKDITADTNTEKLPKPIKGLEFEVELTQENYRLPIR 413 Query: 492 SYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNV 671 +Y + P G R S + PV+FV KK+G+ RM +DYK LNK Sbjct: 414 NYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVK 473 Query: 672 KNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSF 851 N YPLP I+ L ++QG+ F+K+D S YH +++R D K AF +E+LVM + Sbjct: 474 PNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPY 533 Query: 852 GLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 G++ APA F +N IL + V+ ++DDIL++SKS EH H++ VL+ L+ L Sbjct: 534 GISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLII 593 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 +KCEF V F+G+ +S+ I+ V W++P N +R F+G +Y R+F+ Sbjct: 594 NQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 653 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASY 1391 S + L L K+ V W+ ++ + + L + P+L K ++ DAS Sbjct: 654 PKTSQLTHPLNKLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASD 713 Query: 1392 WGLGAALMKEKN-----VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV--K 1550 +GA L ++ + + Y S ++ + NY D E+ A++ +LK W+HYL Sbjct: 714 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEP 773 Query: 1551 CEVYTDHRSLQYVFTQKY--LNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSM 1724 ++ TDHR+L T + N R RW L+D++ I Y P AN +ADALSR Sbjct: 774 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR----- 828 Query: 1725 ESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLI 1904 + E + + D +N F+ + F +++ + ND KL+ Sbjct: 829 ------------IVDETEPIPKDSEDNSIN----FVNQISITDDFKNQVVTEYTNDTKLL 872 Query: 1905 MFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 E + +G ++ K + +P +T+TI+ + H +H Sbjct: 873 NLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIH 924 Score = 172 bits (431), Expect(2) = e-110 Identities = 107/340 (31%), Positives = 174/340 (50%), Gaps = 3/340 (0%) Frame = +2 Query: 2045 QGLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPK 2224 +G HPG + + + F W +++ I E+V C CQ K + P G L +P P+ Sbjct: 919 EGKLIHPGIELLTNTILRRFTWKGLRKQIQEYVQNCHTCQINKSRNHKPYGPLHPIPPPE 978 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE ++MDF+ P++ G Y+++ V+VDR +K A +P + AE+ A+++ VI Sbjct: 979 RPWESLSMDFITALPESSG-YNALLVVVDRFSKMAILLPCTKSITAEQTARMFDQRVIAY 1037 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 G P II+D FTS WK + + + P TDGQ+ERT Q +E +LR Sbjct: 1038 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1097 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYG-RRCRSPIEWFDAFEVRPWGTDLL 2761 W + L + SYNN+ S+ M PFE ++ SP+E +F + + Sbjct: 1098 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLE-LPSFSDKT--DENS 1154 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQKVRDF-EFMEGEQVLLKVSPMKGVMWFGKRGKL 2938 +E++ + ++E + KKY K+++ EF G+ V++K + + K KL Sbjct: 1155 QETIQVFQTVKEHLNTNNIKMKKYFDMKIQETEEFQPGDLVMVKRTK---TGFLHKSNKL 1211 Query: 2939 SPRYIGPFKVLKRVGEVAYELALPPGLSGVHP-VFYVSMLKTY 3064 +P + GPF VL++ G YEL LP + + P F+VS L+ Y Sbjct: 1212 APSFAGPFYVLQKSGPNNYELDLPDSIKHMFPSTFHVSHLEKY 1254 >emb|CAB11682.1| (Z98978) retrotransposable element tf2 155 kd protein [Schizosaccharomyces pombe] Length = 1333 Score = 255 bits (645), Expect(2) = e-109 Identities = 170/577 (29%), Positives = 283/577 (48%), Gaps = 15/577 (2%) Frame = +3 Query: 330 HLIDDTTQIPSI----ESVSIVREFLDVFP-TDLPGMP-PDRDIDFCIDLEPGTRPISIP 491 H + ++ +I E I +EF D+ T+ +P P + ++F ++L + I Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416 Query: 492 SYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNV 671 +Y + P G R S + PV+FV KK+G+ RM +DYK LNK Sbjct: 417 NYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVK 476 Query: 672 KNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSF 851 N YPLP I+ L ++QG+ F+K+D S YH +++R D K AF +E+LVM + Sbjct: 477 PNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPY 536 Query: 852 GLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 G++ APA F +N IL + V+ ++DDIL++SKS EH H++ VL+ L+ L Sbjct: 537 GISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLII 596 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 +KCEF V F+G+ +S+ I+ V W++P N +R F+G +Y R+F+ Sbjct: 597 NQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASY 1391 S + L NL K+ V W+ ++ + + L + P+L K ++ DAS Sbjct: 657 PKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASD 716 Query: 1392 WGLGAALMKEKN-----VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV--K 1550 +GA L ++ + + Y S ++ + NY D E+ A++ +LK W+HYL Sbjct: 717 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEP 776 Query: 1551 CEVYTDHRSLQYVFTQKY--LNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSM 1724 ++ TDHR+L T + N R RW L+D++ I Y P AN +ADALSR Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR----- 831 Query: 1725 ESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLI 1904 + E + + D +N F+ + F +++ + ND KL+ Sbjct: 832 ------------IVDETEPIPKDSEDNSIN----FVNQISITDDFKNQVVTEYTNDTKLL 875 Query: 1905 MFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 E + +G ++ K + +P +T+TI+ + H +H Sbjct: 876 NLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIH 927 Score = 169 bits (423), Expect(2) = e-109 Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 3/340 (0%) Frame = +2 Query: 2045 QGLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPK 2224 +G HPG + + + F W +++ I E+V C CQ K + P G LQ +P + Sbjct: 922 EGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSE 981 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE ++MDF+ P++ G Y++++V+VDR +K A +P + AE+ A+++ VI Sbjct: 982 RPWESLSMDFITALPESSG-YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY 1040 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 G P II+D FTS WK + + + P TDGQ+ERT Q +E +LR Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYG-RRCRSPIEWFDAFEVRPWGTDLL 2761 W + L + SYNN+ S+ M PFE ++ SP+E +F + + Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLE-LPSFSDKT--DENS 1157 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQKVRDF-EFMEGEQVLLKVSPMKGVMWFGKRGKL 2938 +E++ + ++E + KKY K+++ EF G+ V++K + + K KL Sbjct: 1158 QETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK---TGFLHKSNKL 1214 Query: 2939 SPRYIGPFKVLKRVGEVAYELALPPGLSGV-HPVFYVSMLKTY 3064 +P + GPF VL++ G YEL LP + + F+VS L+ Y Sbjct: 1215 APSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257 >emb|CAA93236.1| (Z69240) retrotransposon Tf2p [Schizosaccharomyces pombe] Length = 1333 Score = 255 bits (645), Expect(2) = e-109 Identities = 170/577 (29%), Positives = 283/577 (48%), Gaps = 15/577 (2%) Frame = +3 Query: 330 HLIDDTTQIPSI----ESVSIVREFLDVFP-TDLPGMP-PDRDIDFCIDLEPGTRPISIP 491 H + ++ +I E I +EF D+ T+ +P P + ++F ++L + I Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416 Query: 492 SYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNV 671 +Y + P G R S + PV+FV KK+G+ RM +DYK LNK Sbjct: 417 NYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVK 476 Query: 672 KNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSF 851 N YPLP I+ L ++QG+ F+K+D S YH +++R D K AF +E+LVM + Sbjct: 477 PNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPY 536 Query: 852 GLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 G++ APA F +N IL + V+ ++DDIL++SKS EH H++ VL+ L+ L Sbjct: 537 GISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLII 596 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 +KCEF V F+G+ +S+ I+ V W++P N +R F+G +Y R+F+ Sbjct: 597 NQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASY 1391 S + L NL K+ V W+ ++ + + L + P+L K ++ DAS Sbjct: 657 PKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASD 716 Query: 1392 WGLGAALMKEKN-----VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV--K 1550 +GA L ++ + + Y S ++ + NY D E+ A++ +LK W+HYL Sbjct: 717 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEP 776 Query: 1551 CEVYTDHRSLQYVFTQKY--LNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSM 1724 ++ TDHR+L T + N R RW L+D++ I Y P AN +ADALSR Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR----- 831 Query: 1725 ESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLI 1904 + E + + D +N F+ + F +++ + ND KL+ Sbjct: 832 ------------IVDETEPIPKDSEDNSIN----FVNQISITDDFKNQVVTEYTNDTKLL 875 Query: 1905 MFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 E + +G ++ K + +P +T+TI+ + H +H Sbjct: 876 NLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIH 927 Score = 169 bits (423), Expect(2) = e-109 Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 3/340 (0%) Frame = +2 Query: 2045 QGLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPK 2224 +G HPG + + + F W +++ I E+V C CQ K + P G LQ +P + Sbjct: 922 EGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSE 981 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE ++MDF+ P++ G Y++++V+VDR +K A +P + AE+ A+++ VI Sbjct: 982 RPWESLSMDFITALPESSG-YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY 1040 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 G P II+D FTS WK + + + P TDGQ+ERT Q +E +LR Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYG-RRCRSPIEWFDAFEVRPWGTDLL 2761 W + L + SYNN+ S+ M PFE ++ SP+E +F + + Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLE-LPSFSDKT--DENS 1157 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQKVRDF-EFMEGEQVLLKVSPMKGVMWFGKRGKL 2938 +E++ + ++E + KKY K+++ EF G+ V++K + + K KL Sbjct: 1158 QETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK---TGFLHKSNKL 1214 Query: 2939 SPRYIGPFKVLKRVGEVAYELALPPGLSGV-HPVFYVSMLKTY 3064 +P + GPF VL++ G YEL LP + + F+VS L+ Y Sbjct: 1215 APSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257 >emb|CAB83007.1| (AL162531) retrotransposble element; tf2 type transposon [Schizosaccharomyces pombe] Length = 1333 Score = 255 bits (645), Expect(2) = e-109 Identities = 170/577 (29%), Positives = 283/577 (48%), Gaps = 15/577 (2%) Frame = +3 Query: 330 HLIDDTTQIPSI----ESVSIVREFLDVFP-TDLPGMP-PDRDIDFCIDLEPGTRPISIP 491 H + ++ +I E I +EF D+ T+ +P P + ++F ++L + I Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416 Query: 492 SYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNV 671 +Y + P G R S + PV+FV KK+G+ RM +DYK LNK Sbjct: 417 NYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVK 476 Query: 672 KNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSF 851 N YPLP I+ L ++QG+ F+K+D S YH +++R D K AF +E+LVM + Sbjct: 477 PNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPY 536 Query: 852 GLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 G++ APA F +N IL + V+ ++DDIL++SKS EH H++ VL+ L+ L Sbjct: 537 GISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLII 596 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 +KCEF V F+G+ +S+ I+ V W++P N +R F+G +Y R+F+ Sbjct: 597 NQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASY 1391 S + L NL K+ V W+ ++ + + L + P+L K ++ DAS Sbjct: 657 PKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASD 716 Query: 1392 WGLGAALMKEKN-----VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV--K 1550 +GA L ++ + + Y S ++ + NY D E+ A++ +LK W+HYL Sbjct: 717 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEP 776 Query: 1551 CEVYTDHRSLQYVFTQKY--LNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSM 1724 ++ TDHR+L T + N R RW L+D++ I Y P AN +ADALSR Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR----- 831 Query: 1725 ESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLI 1904 + E + + D +N F+ + F +++ + ND KL+ Sbjct: 832 ------------IVDETEPIPKDSEDNSIN----FVNQISITDDFKNQVVTEYTNDTKLL 875 Query: 1905 MFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 E + +G ++ K + +P +T+TI+ + H +H Sbjct: 876 NLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIH 927 Score = 169 bits (423), Expect(2) = e-109 Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 3/340 (0%) Frame = +2 Query: 2045 QGLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPK 2224 +G HPG + + + F W +++ I E+V C CQ K + P G LQ +P + Sbjct: 922 EGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSE 981 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE ++MDF+ P++ G Y++++V+VDR +K A +P + AE+ A+++ VI Sbjct: 982 RPWESLSMDFITALPESSG-YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY 1040 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 G P II+D FTS WK + + + P TDGQ+ERT Q +E +LR Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYG-RRCRSPIEWFDAFEVRPWGTDLL 2761 W + L + SYNN+ S+ M PFE ++ SP+E +F + + Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLE-LPSFSDKT--DENS 1157 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQKVRDF-EFMEGEQVLLKVSPMKGVMWFGKRGKL 2938 +E++ + ++E + KKY K+++ EF G+ V++K + + K KL Sbjct: 1158 QETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK---TGFLHKSNKL 1214 Query: 2939 SPRYIGPFKVLKRVGEVAYELALPPGLSGV-HPVFYVSMLKTY 3064 +P + GPF VL++ G YEL LP + + F+VS L+ Y Sbjct: 1215 APSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257 >emb|CAB57422.1| (AL121764) retrotransposable element tf2 155 kd protein [Schizosaccharomyces pombe] Length = 1333 Score = 255 bits (645), Expect(2) = e-109 Identities = 170/577 (29%), Positives = 283/577 (48%), Gaps = 15/577 (2%) Frame = +3 Query: 330 HLIDDTTQIPSI----ESVSIVREFLDVFP-TDLPGMP-PDRDIDFCIDLEPGTRPISIP 491 H + ++ +I E I +EF D+ T+ +P P + ++F ++L + I Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416 Query: 492 SYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNV 671 +Y + P G R S + PV+FV KK+G+ RM +DYK LNK Sbjct: 417 NYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVK 476 Query: 672 KNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSF 851 N YPLP I+ L ++QG+ F+K+D S YH +++R D K AF +E+LVM + Sbjct: 477 PNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPY 536 Query: 852 GLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 G++ APA F +N IL + V+ ++DDIL++SKS EH H++ VL+ L+ L Sbjct: 537 GISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLII 596 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 +KCEF V F+G+ +S+ I+ V W++P N +R F+G +Y R+F+ Sbjct: 597 NQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASY 1391 S + L NL K+ V W+ ++ + + L + P+L K ++ DAS Sbjct: 657 PKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASD 716 Query: 1392 WGLGAALMKEKN-----VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV--K 1550 +GA L ++ + + Y S ++ + NY D E+ A++ +LK W+HYL Sbjct: 717 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEP 776 Query: 1551 CEVYTDHRSLQYVFTQKY--LNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSM 1724 ++ TDHR+L T + N R RW L+D++ I Y P AN +ADALSR Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR----- 831 Query: 1725 ESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLI 1904 + E + + D +N F+ + F +++ + ND KL+ Sbjct: 832 ------------IVDETEPIPKDSEDNSIN----FVNQISITDDFKNQVVTEYTNDTKLL 875 Query: 1905 MFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 E + +G ++ K + +P +T+TI+ + H +H Sbjct: 876 NLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIH 927 Score = 169 bits (423), Expect(2) = e-109 Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 3/340 (0%) Frame = +2 Query: 2045 QGLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPK 2224 +G HPG + + + F W +++ I E+V C CQ K + P G LQ +P + Sbjct: 922 EGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSE 981 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE ++MDF+ P++ G Y++++V+VDR +K A +P + AE+ A+++ VI Sbjct: 982 RPWESLSMDFITALPESSG-YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY 1040 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 G P II+D FTS WK + + + P TDGQ+ERT Q +E +LR Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYG-RRCRSPIEWFDAFEVRPWGTDLL 2761 W + L + SYNN+ S+ M PFE ++ SP+E +F + + Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLE-LPSFSDKT--DENS 1157 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQKVRDF-EFMEGEQVLLKVSPMKGVMWFGKRGKL 2938 +E++ + ++E + KKY K+++ EF G+ V++K + + K KL Sbjct: 1158 QETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK---TGFLHKSNKL 1214 Query: 2939 SPRYIGPFKVLKRVGEVAYELALPPGLSGV-HPVFYVSMLKTY 3064 +P + GPF VL++ G YEL LP + + F+VS L+ Y Sbjct: 1215 APSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257 >emb|CAB42363.1| (AL049769) retrotransposable element tf2 155 kd protein [Schizosaccharomyces pombe] Length = 1333 Score = 255 bits (645), Expect(2) = e-109 Identities = 170/577 (29%), Positives = 283/577 (48%), Gaps = 15/577 (2%) Frame = +3 Query: 330 HLIDDTTQIPSI----ESVSIVREFLDVFP-TDLPGMP-PDRDIDFCIDLEPGTRPISIP 491 H + ++ +I E I +EF D+ T+ +P P + ++F ++L + I Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416 Query: 492 SYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNV 671 +Y + P G R S + PV+FV KK+G+ RM +DYK LNK Sbjct: 417 NYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVK 476 Query: 672 KNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSF 851 N YPLP I+ L ++QG+ F+K+D S YH +++R D K AF +E+LVM + Sbjct: 477 PNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPY 536 Query: 852 GLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 G++ APA F +N IL + V+ ++DDIL++SKS EH H++ VL+ L+ L Sbjct: 537 GISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLII 596 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 +KCEF V F+G+ +S+ I+ V W++P N +R F+G +Y R+F+ Sbjct: 597 NQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASY 1391 S + L NL K+ V W+ ++ + + L + P+L K ++ DAS Sbjct: 657 PKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASD 716 Query: 1392 WGLGAALMKEKN-----VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV--K 1550 +GA L ++ + + Y S ++ + NY D E+ A++ +LK W+HYL Sbjct: 717 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEP 776 Query: 1551 CEVYTDHRSLQYVFTQKY--LNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSM 1724 ++ TDHR+L T + N R RW L+D++ I Y P AN +ADALSR Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR----- 831 Query: 1725 ESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLI 1904 + E + + D +N F+ + F +++ + ND KL+ Sbjct: 832 ------------IVDETEPIPKDSEDNSIN----FVNQISITDDFKNQVVTEYTNDTKLL 875 Query: 1905 MFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 E + +G ++ K + +P +T+TI+ + H +H Sbjct: 876 NLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIH 927 Score = 169 bits (423), Expect(2) = e-109 Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 3/340 (0%) Frame = +2 Query: 2045 QGLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPK 2224 +G HPG + + + F W +++ I E+V C CQ K + P G LQ +P + Sbjct: 922 EGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSE 981 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE ++MDF+ P++ G Y++++V+VDR +K A +P + AE+ A+++ VI Sbjct: 982 RPWESLSMDFITALPESSG-YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY 1040 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 G P II+D FTS WK + + + P TDGQ+ERT Q +E +LR Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYG-RRCRSPIEWFDAFEVRPWGTDLL 2761 W + L + SYNN+ S+ M PFE ++ SP+E +F + + Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLE-LPSFSDKT--DENS 1157 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQKVRDF-EFMEGEQVLLKVSPMKGVMWFGKRGKL 2938 +E++ + ++E + KKY K+++ EF G+ V++K + + K KL Sbjct: 1158 QETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK---TGFLHKSNKL 1214 Query: 2939 SPRYIGPFKVLKRVGEVAYELALPPGLSGV-HPVFYVSMLKTY 3064 +P + GPF VL++ G YEL LP + + F+VS L+ Y Sbjct: 1215 APSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257 >emb|CAB60245.1| (AL023518) TF2 type transposable element [Schizosaccharomyces pombe] Length = 1333 Score = 255 bits (645), Expect(2) = e-109 Identities = 170/577 (29%), Positives = 283/577 (48%), Gaps = 15/577 (2%) Frame = +3 Query: 330 HLIDDTTQIPSI----ESVSIVREFLDVFP-TDLPGMP-PDRDIDFCIDLEPGTRPISIP 491 H + ++ +I E I +EF D+ T+ +P P + ++F ++L + I Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416 Query: 492 SYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNV 671 +Y + P G R S + PV+FV KK+G+ RM +DYK LNK Sbjct: 417 NYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVK 476 Query: 672 KNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSF 851 N YPLP I+ L ++QG+ F+K+D S YH +++R D K AF +E+LVM + Sbjct: 477 PNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPY 536 Query: 852 GLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 G++ APA F +N IL + V+ ++DDIL++SKS EH H++ VL+ L+ L Sbjct: 537 GISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLII 596 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 +KCEF V F+G+ +S+ I+ V W++P N +R F+G +Y R+F+ Sbjct: 597 NQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASY 1391 S + L NL K+ V W+ ++ + + L + P+L K ++ DAS Sbjct: 657 PKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASD 716 Query: 1392 WGLGAALMKEKN-----VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV--K 1550 +GA L ++ + + Y S ++ + NY D E+ A++ +LK W+HYL Sbjct: 717 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEP 776 Query: 1551 CEVYTDHRSLQYVFTQKY--LNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSM 1724 ++ TDHR+L T + N R RW L+D++ I Y P AN +ADALSR Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR----- 831 Query: 1725 ESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLI 1904 + E + + D +N F+ + F +++ + ND KL+ Sbjct: 832 ------------IVDETEPIPKDSEDNSIN----FVNQISITDDFKNQVVTEYTNDTKLL 875 Query: 1905 MFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 E + +G ++ K + +P +T+TI+ + H +H Sbjct: 876 NLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIH 927 Score = 169 bits (423), Expect(2) = e-109 Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 3/340 (0%) Frame = +2 Query: 2045 QGLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPK 2224 +G HPG + + + F W +++ I E+V C CQ K + P G LQ +P + Sbjct: 922 EGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSE 981 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE ++MDF+ P++ G Y++++V+VDR +K A +P + AE+ A+++ VI Sbjct: 982 RPWESLSMDFITALPESSG-YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY 1040 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 G P II+D FTS WK + + + P TDGQ+ERT Q +E +LR Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYG-RRCRSPIEWFDAFEVRPWGTDLL 2761 W + L + SYNN+ S+ M PFE ++ SP+E +F + + Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLE-LPSFSDKT--DENS 1157 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQKVRDF-EFMEGEQVLLKVSPMKGVMWFGKRGKL 2938 +E++ + ++E + KKY K+++ EF G+ V++K + + K KL Sbjct: 1158 QETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK---TGFLHKSNKL 1214 Query: 2939 SPRYIGPFKVLKRVGEVAYELALPPGLSGV-HPVFYVSMLKTY 3064 +P + GPF VL++ G YEL LP + + F+VS L+ Y Sbjct: 1215 APSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257 >gb|AAA91215.1| (L10324) protease, reverse transcriptase, RNAse H, integrase protein [Schizosaccharomyces pombe] Length = 1333 Score = 255 bits (645), Expect(2) = e-109 Identities = 170/577 (29%), Positives = 283/577 (48%), Gaps = 15/577 (2%) Frame = +3 Query: 330 HLIDDTTQIPSI----ESVSIVREFLDVFP-TDLPGMP-PDRDIDFCIDLEPGTRPISIP 491 H + ++ +I E I +EF D+ T+ +P P + ++F ++L + I Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416 Query: 492 SYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNV 671 +Y + P G R S + PV+FV KK+G+ RM +DYK LNK Sbjct: 417 NYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVK 476 Query: 672 KNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSF 851 N YPLP I+ L ++QG+ F+K+D S YH +++R D K AF +E+LVM + Sbjct: 477 PNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPY 536 Query: 852 GLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 G++ APA F +N IL + V+ ++DDIL++SKS EH H++ VL+ L+ L Sbjct: 537 GISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLII 596 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 +KCEF V F+G+ +S+ I+ V W++P N +R F+G +Y R+F+ Sbjct: 597 NQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASY 1391 S + L NL K+ V W+ ++ + + L + P+L K ++ DAS Sbjct: 657 PKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASD 716 Query: 1392 WGLGAALMKEKN-----VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV--K 1550 +GA L ++ + + Y S ++ + NY D E+ A++ +LK W+HYL Sbjct: 717 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEP 776 Query: 1551 CEVYTDHRSLQYVFTQKY--LNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSM 1724 ++ TDHR+L T + N R RW L+D++ I Y P AN +ADALSR Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR----- 831 Query: 1725 ESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLI 1904 + E + + D +N F+ + F +++ + ND KL+ Sbjct: 832 ------------IVDETEPIPKDSEDNSIN----FVNQISITDDFKNQVVTEYTNDTKLL 875 Query: 1905 MFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 E + +G ++ K + +P +T+TI+ + H +H Sbjct: 876 NLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIH 927 Score = 169 bits (423), Expect(2) = e-109 Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 3/340 (0%) Frame = +2 Query: 2045 QGLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPK 2224 +G HPG + + + F W +++ I E+V C CQ K + P G LQ +P + Sbjct: 922 EGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSE 981 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE ++MDF+ P++ G Y++++V+VDR +K A +P + AE+ A+++ VI Sbjct: 982 RPWESLSMDFITALPESSG-YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY 1040 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 G P II+D FTS WK + + + P TDGQ+ERT Q +E +LR Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYG-RRCRSPIEWFDAFEVRPWGTDLL 2761 W + L + SYNN+ S+ M PFE ++ SP+E +F + + Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLE-LPSFSDKT--DENS 1157 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQKVRDF-EFMEGEQVLLKVSPMKGVMWFGKRGKL 2938 +E++ + ++E + KKY K+++ EF G+ V++K + + K KL Sbjct: 1158 QETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK---TGFLHKSNKL 1214 Query: 2939 SPRYIGPFKVLKRVGEVAYELALPPGLSGV-HPVFYVSMLKTY 3064 +P + GPF VL++ G YEL LP + + F+VS L+ Y Sbjct: 1215 APSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257 >emb|CAB58169.1| (AL035248) tf2-type transposon [Schizosaccharomyces pombe] Length = 1214 Score = 255 bits (645), Expect(2) = e-109 Identities = 170/577 (29%), Positives = 283/577 (48%), Gaps = 15/577 (2%) Frame = +3 Query: 330 HLIDDTTQIPSI----ESVSIVREFLDVFP-TDLPGMP-PDRDIDFCIDLEPGTRPISIP 491 H + ++ +I E I +EF D+ T+ +P P + ++F ++L + I Sbjct: 238 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 297 Query: 492 SYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNV 671 +Y + P G R S + PV+FV KK+G+ RM +DYK LNK Sbjct: 298 NYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVK 357 Query: 672 KNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSF 851 N YPLP I+ L ++QG+ F+K+D S YH +++R D K AF +E+LVM + Sbjct: 358 PNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPY 417 Query: 852 GLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 G++ APA F +N IL + V+ ++DDIL++SKS EH H++ VL+ L+ L Sbjct: 418 GISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLII 477 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 +KCEF V F+G+ +S+ I+ V W++P N +R F+G +Y R+F+ Sbjct: 478 NQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 537 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASY 1391 S + L NL K+ V W+ ++ + + L + P+L K ++ DAS Sbjct: 538 PKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASD 597 Query: 1392 WGLGAALMKEKN-----VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV--K 1550 +GA L ++ + + Y S ++ + NY D E+ A++ +LK W+HYL Sbjct: 598 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEP 657 Query: 1551 CEVYTDHRSLQYVFTQKY--LNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSM 1724 ++ TDHR+L T + N R RW L+D++ I Y P AN +ADALSR Sbjct: 658 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR----- 712 Query: 1725 ESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLI 1904 + E + + D +N F+ + F +++ + ND KL+ Sbjct: 713 ------------IVDETEPIPKDSEDNSIN----FVNQISITDDFKNQVVTEYTNDTKLL 756 Query: 1905 MFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 E + +G ++ K + +P +T+TI+ + H +H Sbjct: 757 NLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIH 808 Score = 169 bits (423), Expect(2) = e-109 Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 3/340 (0%) Frame = +2 Query: 2045 QGLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPK 2224 +G HPG + + + F W +++ I E+V C CQ K + P G LQ +P + Sbjct: 803 EGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSE 862 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE ++MDF+ P++ G Y++++V+VDR +K A +P + AE+ A+++ VI Sbjct: 863 RPWESLSMDFITALPESSG-YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY 921 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 G P II+D FTS WK + + + P TDGQ+ERT Q +E +LR Sbjct: 922 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 981 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYG-RRCRSPIEWFDAFEVRPWGTDLL 2761 W + L + SYNN+ S+ M PFE ++ SP+E +F + + Sbjct: 982 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLE-LPSFSDKT--DENS 1038 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQKVRDF-EFMEGEQVLLKVSPMKGVMWFGKRGKL 2938 +E++ + ++E + KKY K+++ EF G+ V++K + + K KL Sbjct: 1039 QETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK---TGFLHKSNKL 1095 Query: 2939 SPRYIGPFKVLKRVGEVAYELALPPGLSGV-HPVFYVSMLKTY 3064 +P + GPF VL++ G YEL LP + + F+VS L+ Y Sbjct: 1096 APSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1138 >emb|CAB61532.1| (AL021815) retrotransposable element; tf2-type transposon [Schizosaccharomyces pombe] Length = 1333 Score = 252 bits (638), Expect(2) = e-108 Identities = 169/577 (29%), Positives = 283/577 (48%), Gaps = 15/577 (2%) Frame = +3 Query: 330 HLIDDTTQIPSI----ESVSIVREFLDVFP-TDLPGMP-PDRDIDFCIDLEPGTRPISIP 491 H + ++ +I E I +EF D+ T+ +P P + ++F ++L + I Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416 Query: 492 SYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNV 671 +Y + P G R S + PV+FV KK+G+ RM +DYK LNK Sbjct: 417 NYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVK 476 Query: 672 KNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSF 851 N YPLP I+ L ++QG+ F+K+D S YH +++R D K AF +E+LVM + Sbjct: 477 PNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPY 536 Query: 852 GLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 G++ APA F +N IL + V+ ++D+IL++SKS EH H++ VL+ L+ L Sbjct: 537 GISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLII 596 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 +KCEF V F+G+ +S+ I+ V W++P N +R F+G +Y R+F+ Sbjct: 597 NQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASY 1391 S + L NL K+ V W+ ++ + + L + P+L K ++ DAS Sbjct: 657 PKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASD 716 Query: 1392 WGLGAALMKEKN-----VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV--K 1550 +GA L ++ + + Y S ++ + NY D E+ A++ +LK W+HYL Sbjct: 717 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEP 776 Query: 1551 CEVYTDHRSLQYVFTQKY--LNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSM 1724 ++ TDHR+L T + N R RW L+D++ I Y P AN +ADALSR Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR----- 831 Query: 1725 ESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLI 1904 + E + + D +N F+ + F +++ + ND KL+ Sbjct: 832 ------------IVDETEPIPKDSEDNSIN----FVNQISITDDFKNQVVTEYTNDTKLL 875 Query: 1905 MFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 E + +G ++ K + +P +T+TI+ + H +H Sbjct: 876 NLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIH 927 Score = 169 bits (423), Expect(2) = e-108 Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 3/340 (0%) Frame = +2 Query: 2045 QGLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPK 2224 +G HPG + + + F W +++ I E+V C CQ K + P G LQ +P + Sbjct: 922 EGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSE 981 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE ++MDF+ P++ G Y++++V+VDR +K A +P + AE+ A+++ VI Sbjct: 982 RPWESLSMDFITALPESSG-YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY 1040 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 G P II+D FTS WK + + + P TDGQ+ERT Q +E +LR Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYG-RRCRSPIEWFDAFEVRPWGTDLL 2761 W + L + SYNN+ S+ M PFE ++ SP+E +F + + Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLE-LPSFSDKT--DENS 1157 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQKVRDF-EFMEGEQVLLKVSPMKGVMWFGKRGKL 2938 +E++ + ++E + KKY K+++ EF G+ V++K + + K KL Sbjct: 1158 QETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK---TGFLHKSNKL 1214 Query: 2939 SPRYIGPFKVLKRVGEVAYELALPPGLSGV-HPVFYVSMLKTY 3064 +P + GPF VL++ G YEL LP + + F+VS L+ Y Sbjct: 1215 APSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257 >emb|CAB64236.1| (AL035675) retrotransposable element; tf2-type transposon [Schizosaccharomyces pombe] Length = 1333 Score = 252 bits (638), Expect(2) = e-108 Identities = 169/577 (29%), Positives = 283/577 (48%), Gaps = 15/577 (2%) Frame = +3 Query: 330 HLIDDTTQIPSI----ESVSIVREFLDVFP-TDLPGMP-PDRDIDFCIDLEPGTRPISIP 491 H + ++ +I E I +EF D+ T+ +P P + ++F ++L + I Sbjct: 357 HTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIR 416 Query: 492 SYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNV 671 +Y + P G R S + PV+FV KK+G+ RM +DYK LNK Sbjct: 417 NYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVK 476 Query: 672 KNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSF 851 N YPLP I+ L ++QG+ F+K+D S YH +++R D K AF +E+LVM + Sbjct: 477 PNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPY 536 Query: 852 GLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 G++ APA F +N IL + V+ ++D+IL++SKS EH H++ VL+ L+ L Sbjct: 537 GISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLII 596 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 +KCEF V F+G+ +S+ I+ V W++P N +R F+G +Y R+F+ Sbjct: 597 NQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFI 656 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASY 1391 S + L NL K+ V W+ ++ + + L + P+L K ++ DAS Sbjct: 657 PKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASD 716 Query: 1392 WGLGAALMKEKN-----VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV--K 1550 +GA L ++ + + Y S ++ + NY D E+ A++ +LK W+HYL Sbjct: 717 VAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEP 776 Query: 1551 CEVYTDHRSLQYVFTQKY--LNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSM 1724 ++ TDHR+L T + N R RW L+D++ I Y P AN +ADALSR Sbjct: 777 FKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR----- 831 Query: 1725 ESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLI 1904 + E + + D +N F+ + F +++ + ND KL+ Sbjct: 832 ------------IVDETEPIPKDSEDNSIN----FVNQISITDDFKNQVVTEYTNDTKLL 875 Query: 1905 MFPYKELLGKANEAIIDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 E + +G ++ K + +P +T+TI+ + H +H Sbjct: 876 NLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIH 927 Score = 169 bits (423), Expect(2) = e-108 Identities = 106/340 (31%), Positives = 174/340 (51%), Gaps = 3/340 (0%) Frame = +2 Query: 2045 QGLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPK 2224 +G HPG + + + F W +++ I E+V C CQ K + P G LQ +P + Sbjct: 922 EGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSE 981 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE ++MDF+ P++ G Y++++V+VDR +K A +P + AE+ A+++ VI Sbjct: 982 RPWESLSMDFITALPESSG-YNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAY 1040 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 G P II+D FTS WK + + + P TDGQ+ERT Q +E +LR Sbjct: 1041 FGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVC 1100 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYG-RRCRSPIEWFDAFEVRPWGTDLL 2761 W + L + SYNN+ S+ M PFE ++ SP+E +F + + Sbjct: 1101 STHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLE-LPSFSDKT--DENS 1157 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQKVRDF-EFMEGEQVLLKVSPMKGVMWFGKRGKL 2938 +E++ + ++E + KKY K+++ EF G+ V++K + + K KL Sbjct: 1158 QETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTK---TGFLHKSNKL 1214 Query: 2939 SPRYIGPFKVLKRVGEVAYELALPPGLSGV-HPVFYVSMLKTY 3064 +P + GPF VL++ G YEL LP + + F+VS L+ Y Sbjct: 1215 APSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257 >gb|AAD15321.1| (AC005142) putative reverse transcriptase [Arabidopsis thaliana] Length = 839 Score = 398 bits (1011), Expect = e-108 Identities = 190/294 (64%), Positives = 230/294 (77%) Frame = +3 Query: 789 DVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSN 968 DV KTAF TRY H+EF+VM FGLTNAPAAFM LMN + + +LD FVI+FIDDILVYSKS Sbjct: 520 DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSP 579 Query: 969 KEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWER 1148 +EHE HLR V+E LRE+KL+AK SKC FW + FLGH+VS + V VDP KIE ++ W R Sbjct: 580 EEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPR 639 Query: 1149 PTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTT 1328 PTN T +RSF+GLA YYRRF+KGF+S+A +T LT + VP VWS ECEE F L +LT+ Sbjct: 640 PTNATEIRSFLGLAGYYRRFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTS 699 Query: 1329 APILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVV 1508 P+L LP G+ ++VY DAS GLG ALM+ VIAYASRQL+ HE NYPTHDLE+AAV+ Sbjct: 700 TPVLALPEHGEPYMVYTDASGVGLGCALMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVI 759 Query: 1509 FALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYH 1670 FALK W+ YLYG K +V+TDH+SL+Y+FTQ LNLRQRRWMEL+ DYD+ I YH Sbjct: 760 FALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYH 813 Score = 52.3 bits (123), Expect = 3e-004 Identities = 43/145 (29%), Positives = 64/145 (43%), Gaps = 1/145 (0%) Frame = +3 Query: 75 VTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDY- 251 + G + DL+I + +DVI GM WL LDC+ V+ +P EG Sbjct: 377 IQIAGESLPADLIISHVELYDVILGMDWLDHYRVHLDCHRGRVSFERP-------EGSAG 429 Query: 252 TSTPVHIIYFLRAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLDVFPTDLPGMPP 431 + L + + C Q+ ++ + +V+EF VF + L G+PP Sbjct: 430 RENDREGLRGLPGDDIYAGVC-----------GQV-AVSDIRVVQEFQYVFQS-LQGLPP 476 Query: 432 DRDIDFCIDLEPGTRPISIPSYTMAP 509 R F I+LEP T P+S Y MAP Sbjct: 477 SRSDPFTIELEPKTAPLSKAPYRMAP 502 Score = 40.2 bits (92), Expect = 1.4 Identities = 16/24 (66%), Positives = 20/24 (82%) Frame = +2 Query: 2480 ELGTRVDLCTEFHPHTDGQSERTI 2551 E+GT+V + T +HP TDGQSERTI Sbjct: 816 EMGTKVQMSTTYHPQTDGQSERTI 839 >emb|CAB77850.1| (AL161497) putative reverse transcriptase [Arabidopsis thaliana] Length = 839 Score = 398 bits (1011), Expect = e-108 Identities = 190/294 (64%), Positives = 230/294 (77%) Frame = +3 Query: 789 DVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSN 968 DV KTAF TRY H+EF+VM FGLTNAPAAFM LMN + + +LD FVI+FIDDILVYSKS Sbjct: 520 DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSP 579 Query: 969 KEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWER 1148 +EHE HLR V+E LRE+KL+AK SKC FW + FLGH+VS + V VDP KIE ++ W R Sbjct: 580 EEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPR 639 Query: 1149 PTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTT 1328 PTN T +RSF+GLA YYRRF+KGF+S+A +T LT + VP VWS ECEE F L +LT+ Sbjct: 640 PTNATEIRSFLGLAGYYRRFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTS 699 Query: 1329 APILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVV 1508 P+L LP G+ ++VY DAS GLG ALM+ VIAYASRQL+ HE NYPTHDLE+AAV+ Sbjct: 700 TPVLALPEHGEPYMVYTDASGVGLGCALMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVI 759 Query: 1509 FALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYH 1670 FALK W+ YLYG K +V+TDH+SL+Y+FTQ LNLRQRRWMEL+ DYD+ I YH Sbjct: 760 FALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYH 813 Score = 52.3 bits (123), Expect = 3e-004 Identities = 43/145 (29%), Positives = 64/145 (43%), Gaps = 1/145 (0%) Frame = +3 Query: 75 VTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDY- 251 + G + DL+I + +DVI GM WL LDC+ V+ +P EG Sbjct: 377 IQIAGESLPADLIISHVELYDVILGMDWLDHYRVHLDCHRGRVSFERP-------EGSAG 429 Query: 252 TSTPVHIIYFLRAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLDVFPTDLPGMPP 431 + L + + C Q+ ++ + +V+EF VF + L G+PP Sbjct: 430 RENDREGLRGLPGDDIYAGVC-----------GQV-AVSDIRVVQEFQYVFQS-LQGLPP 476 Query: 432 DRDIDFCIDLEPGTRPISIPSYTMAP 509 R F I+LEP T P+S Y MAP Sbjct: 477 SRSDPFTIELEPKTAPLSKAPYRMAP 502 Score = 40.2 bits (92), Expect = 1.4 Identities = 16/24 (66%), Positives = 20/24 (82%) Frame = +2 Query: 2480 ELGTRVDLCTEFHPHTDGQSERTI 2551 E+GT+V + T +HP TDGQSERTI Sbjct: 816 EMGTKVQMSTTYHPQTDGQSERTI 839 >gb|AAF79348.1|AC007887_7 (AC007887) F15O4.13 [Arabidopsis thaliana] Length = 1887 Score = 397 bits (1009), Expect = e-108 Identities = 208/452 (46%), Positives = 291/452 (64%), Gaps = 1/452 (0%) Frame = +3 Query: 378 IVREFLDVFPTDLP-GMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXS 554 +++++ DVFP + P G+PP R I+ ID PG + P+Y P Sbjct: 876 LLQDYTDVFPEENPVGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVTELME 935 Query: 555 KGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +G R S SP PVL V KKDGS+RMC+D + +N + VK ++P+P +D++ D+L G+ Sbjct: 936 RGHIRESMSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSSI 995 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 FSK+D SGYHQ++++ D KTAF T YE+LVM FGLTNAP+ FM LMN +L+ ++ Sbjct: 996 FSKVDLKSGYHQIRMKEGDEWKTAFKTIQGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFI 1055 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 FVI++ DDILVYSKS +EH HL++VLE+LR++KLYA KC F D + FLG VVS Sbjct: 1056 GRFVIVYFDDILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTDNLVFLGFVVST 1115 Query: 1095 D*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSV 1274 D V VD K++ ++ W P +V VRSF GLA +YRRFVK FS++A+ LT + K++V Sbjct: 1116 DGVKVDEEKVKAIREWPSPKSVGEVRSFHGLAGFYRRFVKDFSTLAAPLTEVIKKNVGFK 1175 Query: 1275 WSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQL 1454 W E++FQ L LT AP+L+LP K F + CDAS G+G LM++K IAY S +L Sbjct: 1176 WEQAQEDAFQALKEKLTHAPVLSLPDFLKTFEIECDASGVGIGVVLMQDKKPIAYFSEKL 1235 Query: 1455 KVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWME 1634 NYPT+D EL A+V AL+ +HYL+ + ++TDH SL+++ Q+ LN R RW+E Sbjct: 1236 GGATLNYPTYDKELYALVRALQTGQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHARWVE 1295 Query: 1635 LLKDYDITILYHPEKANVVADALSRKAGSMESL 1733 ++ + I Y K NVVADALSR+ + SL Sbjct: 1296 FIETFPYVIKYKKGKDNVVADALSRRYVLLSSL 1328 Score = 216 bits (544), Expect = 1e-053 Identities = 124/320 (38%), Positives = 178/320 (54%), Gaps = 9/320 (2%) Frame = +2 Query: 2048 GLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKF 2227 GL H G +K + ++ HF W MKRD+ +CP C++ K + Q P G +PIP Sbjct: 1395 GLMGHFGVSKTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQ-PHGLYTPLPIPSH 1453 Query: 2228 KWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLH 2407 W I+MDFVVG P+T DSI+V+VDR +K AHFIP T +A A L+ EV+RLH Sbjct: 1454 PWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAIHIANLFFREVVRLH 1513 Query: 2408 GVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVV 2587 G+P I+SDR TKF S FWKTL +LGT++ T HP TDGQ+E + L +LRA + Sbjct: 1514 GMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIK 1573 Query: 2588 EFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRE 2767 + W+ LP EF+YN+S S+ +PF+ +YG +P++ P + + Sbjct: 1574 KNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPL----PLSERVSLD 1629 Query: 2768 SLDKVKCIQEKHLAAQSRKKKYVVQKVRDF---------EFMEGEQVLLKVSPMKGVMWF 2920 K + +Q+ H + KK + +K + + E + E L+ + K Sbjct: 1630 GKKKAELVQQIH----EQAKKNIEEKTKQYAKHANKSRKEVIFNEGDLVWIHLRKERFPK 1685 Query: 2921 GKRGKLSPRYIGPFKVLKRVGEVAYELAL 3007 ++ KL R GPFKVLKR+ AY L L Sbjct: 1686 ERKSKLMSRIDGPFKVLKRINNNAYSLDL 1714 >dbj|BAA89466.1| (AB033235) gag-pol polyprotein [Oryza sativa] Length = 1587 Score = 390 bits (992), Expect = e-106 Identities = 196/466 (42%), Positives = 290/466 (62%), Gaps = 1/466 (0%) Frame = +3 Query: 336 IDDTTQIPSIESVSIVREFLDVFPTDLP-GMPPDRDIDFCIDLEPGTRPISIPSYTMAPT 512 I+DT ++++E+ D+FP ++P G+PP R I+ IDL PG + Y P Sbjct: 698 IEDTPISLRPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPE 757 Query: 513 XXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLP 692 KG+ R S SP PVL V KKDGS+RMC+D + +N + ++ ++P+P Sbjct: 758 ETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIP 817 Query: 693 HIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPA 872 +D++ D+L G+ FSKID SGYHQ++++ D KTAF T++ YE+LVM FGLTNAP+ Sbjct: 818 RLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPS 877 Query: 873 AFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEF 1052 FM LMN +L+ ++ FV+++ DDIL+YS+S ++H HLR V + LR+ +L+ KC F Sbjct: 878 TFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTF 937 Query: 1053 WLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVA 1232 D VSFLG+VV+ + VD K+E + SW PT +T VRSF+GLA +YRRFVK FS++A Sbjct: 938 CTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIA 997 Query: 1233 SQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAAL 1412 + L LTK++V W+ +F L LT AP+L LP K F + CDAS GLG L Sbjct: 998 APLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVL 1057 Query: 1413 MKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVF 1592 ++E +AY S +L NY T+D EL A+V L+ W+HYL+ + +++DH SL+++ Sbjct: 1058 LQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIR 1117 Query: 1593 TQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESL 1733 +Q N R +W+E ++ + I + K NV+ADALSR+ + L Sbjct: 1118 SQAKHNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQL 1164 Score = 232 bits (586), Expect = 2e-058 Identities = 140/342 (40%), Positives = 193/342 (55%), Gaps = 10/342 (2%) Frame = +2 Query: 2048 GLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKF 2227 GL H G KM L HF+W + +RD+ FVA+C CQK K P G +P+P Sbjct: 1232 GLMGHFGVKKMEDILADHFFWPKKRRDVERFVARCTTCQKAK-SRLNPHGLYMPLPVPSV 1290 Query: 2228 KWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLH 2407 WE I+MDFV+G P+T DSI+V+VDR +K AHFIP + +A A L+ E++RLH Sbjct: 1291 PWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLH 1350 Query: 2408 GVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVV 2587 GVP I+SDR TKF S FW+TL +LGT++ T HP TDGQ+E + L MLRA + Sbjct: 1351 GVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLK 1410 Query: 2588 EFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEW----------FDAFEV 2737 + W+ LP EF+YN S S+ PFE +YG R+PI+ FDA Sbjct: 1411 KNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYR 1470 Query: 2738 RPWGTDLLRESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMW 2917 L + + ++ + K+ A S+ KK+V F G+ V L + K Sbjct: 1471 AELMLKLHETTKENIERMNIKYKLAGSKGKKHVA-------FEPGDLVWLHL--RKDRFP 1521 Query: 2918 FGKRGKLSPRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGD 3073 ++ KL PR GPFKVL+++ + AY+L LP GV P F ++ LK Y G+ Sbjct: 1522 NLRKSKLLPRADGPFKVLQKINDNAYKLELPADF-GVSPTFNIADLKPYLGE 1572 >gb|AAG12877.1|AC069473_8 (AC069473) gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana] Length = 1499 Score = 376 bits (954), Expect = e-101 Identities = 203/472 (43%), Positives = 290/472 (61%), Gaps = 3/472 (0%) Frame = +3 Query: 378 IVREFLDVF--PTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXX 551 ++ E+ D+F PT LP P + I L G+ P++ Y + Sbjct: 568 VLNEYPDIFIEPTALP--PFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLL 625 Query: 552 SKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGAC 731 + G + S+SP+ SPV+ VKKKDG++R+C+DY++LN + VK+ +P+P I++L D+L GA Sbjct: 626 TNGTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAV 685 Query: 732 TFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPY 911 FSKID +GYHQ+++ D+ KTAF T H+E+LVM FGLTNAPA F LMN I KP+ Sbjct: 686 IFSKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPF 745 Query: 912 LDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 L FV++F DDILVYS S +EH HL+ V E++R KL+AK SKC F + V +LGH +S Sbjct: 746 LRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFIS 805 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + DP KI+ VK W +PT + +R F+GLA YYRRFV+ F +A L LTK Sbjct: 806 AQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDA-F 864 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQ 1451 W+ +++F+ L L AP+L+LP+ K F+V DA G+GA LM+E + +AY SRQ Sbjct: 865 EWTAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISRQ 924 Query: 1452 LKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWM 1631 LK + + ++ EL AV+FA+++W+HYL + TD RSL+Y+ Q+ Q++W+ Sbjct: 925 LKGKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWL 984 Query: 1632 ELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQT-LAND 1793 L ++D I Y K NVVADALSR GS V L +++Q AND Sbjct: 985 PKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQAGYAND 1039 Score = 256 bits (648), Expect = 9e-066 Identities = 145/408 (35%), Positives = 224/408 (54%), Gaps = 1/408 (0%) Frame = +2 Query: 2048 GLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKF 2227 G+ H G ++ +K F+W M +DI ++ C CQ+ K + G LQ +PIP Sbjct: 1092 GVGGHSGRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPIPDT 1151 Query: 2228 KWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLH 2407 W +++MDF+ G P + GK I V+VDRL+K+AHFI + Y+A A Y+ V +LH Sbjct: 1152 IWSEVSMDFIEGLPVSGGK-TVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLH 1210 Query: 2408 GVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVV 2587 G P I+SDR FTS FW+ G + L + +HP +DGQ+E + LE LR Sbjct: 1211 GCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCH 1270 Query: 2588 EFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRE 2767 + W +L LAE+ YN +Y SS M PFE +YG+ + + L+E Sbjct: 1271 DRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQE 1330 Query: 2768 SLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMK-GVMWFGKRGKLSP 2944 D + ++ + AQ R K++ Q + EF G+ V +K+ P + + KLSP Sbjct: 1331 REDMLLFLKFHLMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSP 1390 Query: 2945 RYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLS 3124 +Y GP+K++ R GEVAY+LAL P S VHPVF+VS LK G+ + + SV+ D Sbjct: 1391 KYFGPYKIIDRCGEVAYKLAL-PSYSQVHPVFHVSQLKVLVGNVSTTVHLPSVMQD---V 1446 Query: 3125 YEEEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYP 3271 +E+ P +++R++ + + + + V+W N P+EE+TWE D+Q+ +P Sbjct: 1447 FEKVPEKVVERKMVNRQGKAVTKVLVKWSNEPLEEATWEFLFDLQKTFP 1495 >gb|AAG13508.1|AC068924_13 (AC068924) putative gag-pol polyprotein; 99986-95160 [Oryza sativa] Length = 1608 Score = 368 bits (934), Expect = 3e-099 Identities = 216/563 (38%), Positives = 310/563 (54%), Gaps = 7/563 (1%) Frame = +3 Query: 48 CEKVYRSCLVTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAI-LDCNAKTVTLAKPGT 224 C+ +C G + D +L + +D I GM WL + +D K + G Sbjct: 493 CDSFLPNCSWWSQGHSFTSDFRLLPLGSYDAILGMDWLEQFSPMQVDWVHKWIAFQHHGQ 552 Query: 225 YPLVWEGDYTSTPVHIIYFLRAKKMVSKGCLAFLAHL-IDDT---TQIPSIESVSIVREF 392 + + I + + M KG + L HL + +T T +P I I+ EF Sbjct: 553 AVQLQGIHPQLSTCFPISNDQLQGMSKKGAVMCLVHLNVAETLTATTVPEIVQ-PILNEF 611 Query: 393 LDVF--PTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFT 566 ++F PT+LP P R+ D I L G +P+++ Y P G Sbjct: 612 QEIFSEPTELP---PKRNCDHHIPLVEGAKPVNLRPYRYKPALKDEIERQVAEMLRSGVI 668 Query: 567 RPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKI 746 +PS+SP+ SP L VKKKDG++R+CIDY+QLN V VK+KYP+P ID L D+L G+ FSK+ Sbjct: 669 QPSSSPFSSPALLVKKKDGTWRLCIDYRQLNDVTVKSKYPVPVIDELLDELAGSKWFSKL 728 Query: 747 DFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFV 926 D +GYHQ+++ D KTAF T HYE+ VMSFGLT APA F+S MN L P L F Sbjct: 729 DLRAGYHQIRMAEGDEYKTAFQTHSGHYEYKVMSFGLTGAPATFLSAMNETLSPVLRKFA 788 Query: 927 ILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VM 1106 ++F DDIL+YS + + H H+R VL++L + K SKC F +S+LGHV+ V Sbjct: 789 LVFFDDILIYSPTLELHLQHVRTVLQLLSAHQWKVKLSKCSFAQQEISYLGHVIGAAGVA 848 Query: 1107 VDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDE 1286 DP KI+ V SW +PT + +R F+GLA YYR+FV+ F ++ LT L K+ +P W+ E Sbjct: 849 TDPAKIQDVVSWPQPTTIKKLRGFLGLAGYYRKFVRHFGLISKPLTQLLKKGIPFKWTPE 908 Query: 1287 CEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHE 1466 E +FQ+L L AP+L LP K+F + DAS G+GA L +EK+ IAY SR L Sbjct: 909 IESAFQQLKQALVAAPVLALPDFSKHFTIETDASDVGIGAVLSQEKHPIAYLSRALGPKT 968 Query: 1467 RNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKD 1646 R T++ E A++ A++ W+ YL + + TDH SL ++ Q+ Q++ L Sbjct: 969 RGLSTYEKEYMAIILAVEHWRPYLQQGEFIILTDHHSLMHLTEQRLHTPWQQKAFTKLLG 1028 Query: 1647 YDITILYHPEKANVVADALSRKAGSMESLA 1736 I Y +N ADALSR+ + +A Sbjct: 1029 LQYKICYRKGVSNAAADALSRRESPISEVA 1058 Score = 236 bits (597), Expect = 8e-060 Identities = 147/407 (36%), Positives = 221/407 (54%), Gaps = 7/407 (1%) Frame = +2 Query: 2051 LSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFK 2230 L H G YR +K F W MK+ I E + C C + K + G LQ +P+P Sbjct: 1132 LGGHSGFPVTYRKVKSLFAWPGMKKLIKEQLQSCQVCLQAKPDRARYPGLLQPLPVPAGA 1191 Query: 2231 WEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHG 2410 W+ I++DF+ G P++ Y+ I V+VD+ +K +HFIP+ +NA A+ ++ + +LHG Sbjct: 1192 WQTISLDFIEGLPRS-SHYNCILVVVDKFSKYSHFIPLSHPFNAGGVAQEFMKNIYKLHG 1250 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 +P IISDR FTS FW L + GT + + + +HP +DGQ+ER Q LE LR C V Sbjct: 1251 LPRAIISDRDKIFTSQFWDQLFSKFGTDLHMSSAYHPQSDGQTERVNQCLEIYLR-CFVH 1309 Query: 2591 FAGH-WDSFLPLAEFSYNNSYQSSIDMAPFEALYG---RRCRSPIEWFDAFEVRPWGTDL 2758 A H W S+L LAEF YN S+ S+++ PFE LYG ++ ++ W T+ Sbjct: 1310 AAPHKWSSWLYLAEFWYNTSFHSTLNKTPFEVLYGYTPSHFGIGLDDCQIADLHEWHTE- 1368 Query: 2759 LRESLDKVKCIQEKHLAAQSRKKKYVVQKVRDF-EFMEGEQVLLKVSPMKGVMWFGKRG- 2932 R+ + + + ++HL ++ K+ K R F +F G+ V LK+ P + +R Sbjct: 1369 -RKFMQQ---LLQQHLNRAQQQMKHQADKKRSFRQFAVGDWVYLKLQPYVQT-FVAQRAC 1423 Query: 2933 -KLSPRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLL 3109 KL+ RY GPF+V+ RVG VAY + L P S +HPVF+VS LK G + L Sbjct: 1424 HKLAFRYYGPFQVMSRVGTVAYHIQL-PATSSIHPVFHVSQLKAAVGFSKKV----QDEL 1478 Query: 3110 DENLSYEEEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYP 3271 +L + P LD+ + K +R + + W + ESTWE D+ R+P Sbjct: 1479 PTSLGALQVPFQFLDKRLVKKGNRSVLQLLTHWYHSSPSESTWEDMEDLFARFP 1532 >gb|AAF18613.1|AC005171_1 (AC005171) putative retroelement integrase [Arabidopsis thaliana] Length = 1215 Score = 362 bits (919), Expect = 1e-097 Identities = 199/470 (42%), Positives = 284/470 (60%), Gaps = 1/470 (0%) Frame = +3 Query: 324 LAHLIDDTTQIPSIESVSIVREFLDVFPTDLP-GMPPDRDIDFCIDLEPGTRPISIPSYT 500 L L + +PS E S+++++ DVFP D P G+PP R I+ ID PG + P+Y Sbjct: 394 LTSLTNFAPVLPS-EMTSLLQDYKDVFPEDNPKGLPPIRGIEHQIDFVPGASLPNRPAYR 452 Query: 501 MAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNK 680 P ++KDGS+RMC D + +N V VK Sbjct: 453 TNPVETKE--------------------------LQRQKDGSWRMCFDCRAINNVTVKYC 486 Query: 681 YPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLT 860 +P+P +D++ D+L G+ FSKID SGYHQ+++ D KTAF T++ YE+LVM FGLT Sbjct: 487 HPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEGDEWKTAFKTKHGLYEWLVMPFGLT 546 Query: 861 NAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFS 1040 +AP+ FM LMN +L+ ++ +FVI++ DDILVYS+S +EH HL VL +LR+++LYA Sbjct: 547 HAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSESLREHIEHLDSVLNVLRKEELYANLK 606 Query: 1041 KCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGF 1220 KC F D + FLG VVS D V VD K++ ++ W P V VRSF GLA +YRRF K F Sbjct: 607 KCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFHGLAGFYRRFFKDF 666 Query: 1221 SSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGL 1400 S++ + LT + K+ V W EE+FQ L LT AP+L L K F + CDAS G+ Sbjct: 667 STIVAPLTEVMKKDVGFKWEKAQEEAFQSLKDKLTNAPVLILSEFLKTFEIECDASGIGI 726 Query: 1401 GAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSL 1580 GA LM+++ +IA+ S +L NYPT+D EL A+V AL++W+HYL+ ++TDH SL Sbjct: 727 GAVLMQDQKLIAFFSEKLGGATLNYPTYDKELYALVRALQRWQHYLWPKVFVIHTDHESL 786 Query: 1581 QYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESL 1733 +++ Q+ LN R RW+E ++ + I Y K NVVADALS++ + +L Sbjct: 787 KHLKGQQKLNKRHARWVEFIETFAYVIKYKKGKDNVVADALSQRYTLLSTL 837 Score = 67.9 bits (163), Expect = 6e-009 Identities = 36/86 (41%), Positives = 49/86 (56%) Frame = +2 Query: 2048 GLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKF 2227 GL H G K + +HF W MK D+ +C C++ K + Q P G +PIPK Sbjct: 904 GLMGHFGIAKTLEVMTEHFRWPHMKCDVKRICGRCNTCKQAKSKIQ-PNGLYTPLPIPKH 962 Query: 2228 KWEKIAMDFVVGFPKTIGKYDSIWVI 2305 W I+MDFV+G P+T GK DSI+V+ Sbjct: 963 PWNDISMDFVMGLPRT-GK-DSIFVV 986 Score = 41.0 bits (94), Expect = 0.79 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 28/184 (15%) Frame = +2 Query: 2669 APFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKCIQEKHLAA----QSRKKKYV 2836 +PF+ +YG +PI FD + P + + K + +Q+ H A + + K Y Sbjct: 988 SPFQIVYGF---NPISPFDLIPL-PLSERVSIDGKKKAELVQQIHENARRNIEEKTKLYA 1043 Query: 2837 VQKV---RDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVLKRVGEVAYELAL 3007 Q R+ F G+ V + + K ++ KL PR GPFK++KR+ + AY+L L Sbjct: 1044 KQANKGRREQIFEVGDMVWIHLR--KERFPAQRKSKLMPRIDGPFKIIKRINDNAYQLDL 1101 Query: 3008 P--------PGLSGVHPVFYVSMLKTYH----------GDGNYIIRWDSVLLDENLSYEE 3133 P G + S+ H +G ++ D ++ +E L E+ Sbjct: 1102 QDEPDLRSNPFQEGGDDMIMDSINDMEHEPELERELVAEEGAKLVAEDELVAEEKLVVED 1161 Query: 3134 ---EPVAILDREVPKLRSREIASIKVQWKNRP 3220 P + R KL + IA + ++RP Sbjct: 1162 VLVTPAVPMTRSRAKLFDQAIAGMLNHIRDRP 1193 >gb|AAF13073.1|AC011621_1 (AC011621) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1661 Score = 356 bits (904), Expect = 8e-096 Identities = 205/552 (37%), Positives = 301/552 (54%), Gaps = 9/552 (1%) Frame = +3 Query: 105 DLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVW-----EGDYTSTPVH 269 D + ++ D D++ G +WL+ + + A L W + D + Sbjct: 586 DYYLFDLGDLDLVLGFSWLA---GLGETRANWRDLRISWQIGRTWVSLYGDPDLCRGQIS 642 Query: 270 IIYFLRAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLD----VFPTDLPGMPPDR 437 + R K L LA L + Q ++ LD VF T +PP R Sbjct: 643 MRSMERVIKYTGTAYLLELASLFESKKQEEQTALQPAIQRLLDQYQGVFQTPQL-LPPVR 701 Query: 438 DIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKK 617 + + I L+ G+ P++I Y + + RPS SP+ SPVL VKKK Sbjct: 702 NREHAITLQEGSSPVNIRPYRYSFAQKNEIEKLVREMLNAQIIRPSVSPYSSPVLLVKKK 761 Query: 618 DGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVP 797 DG +R C+DY+ LN+ + +KYP+P I+ L D+L+GA FSK+D SGY Q++++ +DV Sbjct: 762 DGGWRFCVDYRALNEATIPDKYPIPVIEELLDELKGATVFSKLDLKSGYFQIRMKLSDVE 821 Query: 798 KTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEH 977 KTAF T HYEFLVM FGLTNAP+ F S+MN + +PYL FV++F DDILVYS K H Sbjct: 822 KTAFKTHEGHYEFLVMPFGLTNAPSTFQSVMNDLFRPYLRKFVLVFFDDILVYSPDMKTH 881 Query: 978 E*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTN 1157 HL VL++L + YA F KC F +S+LGH++S+ V DP K+E + W P + Sbjct: 882 LKHLETVLQLLHLHQFYANFKKCTFGSTRISYLGHIISEQGVATDPEKVEAMLQWPLPKS 941 Query: 1158 VT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPI 1337 VT +R F+G YYRRFVK + +A L + K++ W++ +FQ L ++ P+ Sbjct: 942 VTELRGFLGFTGYYRRFVKNYGQIARPLRDQLKKN-SFDWNEAATSAFQALKAAVSALPV 1000 Query: 1338 LNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFAL 1517 L LP + F V DAS G+GA L + K +IA+ S+ R ++ EL A+V A+ Sbjct: 1001 LVLPDFQQEFTVETDASGMGIGAVLSQNKRLIAFLSQAFSSQGRIRSVYERELLAIVKAV 1060 Query: 1518 KQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVAD 1697 +WKHYL + + TD RSL+++ QK ++ Q+RW L I Y P N VAD Sbjct: 1061 TKWKHYLSSKEFIIKTDQRSLRHLLEQKSVSTIQQRWASKLSGLKYRIEYKPGVDNKVAD 1120 Query: 1698 ALSRKAGSMESLAHSQVSRRP 1760 ALSR+ + E+L+ ++ P Sbjct: 1121 ALSRRPPT-EALSQLTITGPP 1140 Score = 240 bits (607), Expect = 6e-061 Identities = 142/404 (35%), Positives = 216/404 (53%), Gaps = 1/404 (0%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H GA K ++ L +W +++D+V ++ C CQ+ KY P G L +PIP+ W Sbjct: 1211 HEGALKTFKRLTSEVYWRGLRKDVVNYIKGCQICQENKYSTLSPAGLLSPLPIPQQIWSD 1270 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 +++DFV G P + +++ I V+VDRL+K +HFIP+K + A+ + +I +V++LHG P Sbjct: 1271 VSLDFVEGLPSS-NRFNCILVVVDRLSKYSHFIPLKHPFTAKTVVEAFIRDVVKLHGFPN 1329 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 ++SDR F S FW L + GT + T +HP TDGQ+E + LE LR Sbjct: 1330 TLVSDRDRIFLSGFWSELFKLQGTGLQKSTAYHPQTDGQTEVVNRCLESYLRCFAGRRPT 1389 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDK 2779 W +LP AE+ YN SY S+ PF+A+YGR + + D +LL++ Sbjct: 1390 SWFQWLPWAEYWYNTSYHSATKTTPFQAVYGREPPVLLRYGDIPTNNANVEELLKDRDGM 1449 Query: 2780 VKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMK-GVMWFGKRGKLSPRYIG 2956 + ++E AQ++ KK + RD F E V LK+ P + + K KLS RY G Sbjct: 1450 LVELRENLEIAQAQMKKAADKSRRDVAFEIDEWVYLKLRPYRQSSVAHRKNEKLSQRYFG 1509 Query: 2957 PFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLSYEEE 3136 PFKVL R+G+VAY+L LP S +HPVF+VS LK ++ + +L L + Sbjct: 1510 PFKVLHRIGQVAYKLQLPEH-STIHPVFHVSQLKR-AVPPSFTPQELPKILSPTLEWNTG 1567 Query: 3137 PVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYP 3271 P +LD + + + + VQW ESTWE + ++YP Sbjct: 1568 PEKLLD--IRQSNTNSGPEVLVQWSGLSTLESTWEPLLTLVQQYP 1610 >dbj|BAA75235.1| (AB014746) polyprotein [Hordeum vulgare] Length = 265 Score = 342 bits (868), Expect = 1e-091 Identities = 163/265 (61%), Positives = 203/265 (76%) Frame = +3 Query: 912 LDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 LD FV++FIDDILVYS+S ++H+ HLR+VL LRE +LYAK SKCEFWL V FLGHV+S Sbjct: 1 LDKFVVVFIDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 60 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 V+VDP + V W++P VT +RSF+GLA YYRRF++ FS A +T L K+ Sbjct: 61 AKGVVVDPETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENFSKTARPMTQLLKKEEKF 120 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQ 1451 VWS +CE++FQ L L ++P+L LP K+F+VYCDAS GLG LM++ +V+AYASRQ Sbjct: 121 VWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASCQGLGCVLMQDGHVVAYASRQ 180 Query: 1452 LKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWM 1631 L HE NYPTHDLELAAVV ALK W+HYL G +CE+YTDH+SL+Y+FTQ L LRQRRW+ Sbjct: 181 LWPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLKLRQRRWL 240 Query: 1632 ELLKDYDITILYHPEKANVVADALS 1706 EL+KDYD+ I YHP KANVVADALS Sbjct: 241 ELIKDYDVGIHYHPGKANVVADALS 265 >gb|AAC33526.2| (AF030881) pol polyprotein [Takifugu rubripes] Length = 1187 Score = 341 bits (866), Expect = 2e-091 Identities = 189/445 (42%), Positives = 264/445 (58%), Gaps = 9/445 (2%) Frame = +3 Query: 378 IVREFLDVFPTDLP-GMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXS 554 I + VF D +PP D IDL PG + Y ++ + Sbjct: 243 IYNDLAPVFSKDNALSLPPHWPYDCPIDLLPGAPYPTGRLYNLSIPEKEVMRNYITESLA 302 Query: 555 KGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 G RPS+SP + FV K+DG R CID+++LN + VKNKYPLP + + F+ L A Sbjct: 303 SGIIRPSSSPLAAGFFFVAKEDGGLRPCIDFRKLNNITVKNKYPLPLMSSTFEPLTHARV 362 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 F+K+D + YH ++IR D KTAF T H+E+LVM FGL+NAPA F L+N +L+ + Sbjct: 363 FTKLDLRNAYHLVQIRKGDEWKTAFNTHLGHFEYLVMPFGLSNAPAVFQELVNDVLRDMI 422 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 ++FV++++DDIL++S++ +EH H+R+VL+ L E +L+ K KC F V +LG++V + Sbjct: 423 NVFVVVYLDDILIFSRTMEEHHQHVRLVLQRLLENRLFIKAEKCIFHSASVGYLGYIVEE 482 Query: 1095 D*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSV 1274 V DP KI+ V W RPT+ T +R F+G A + RRF+KGFS VA+ L+ LT S P Sbjct: 483 GRVRADPAKIQAVVEWPRPTDRTQLRRFLGFAGFIRRFIKGFSQVAAPLSALTSTSRPFA 542 Query: 1275 WSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNV------IA 1436 W+ E E +F L TTAP+L P + FIV DAS G+GA L + A Sbjct: 543 WTPEAETAFSALKDRFTTAPVLAHPDPARQFIVEVDASDAGIGAVLSQRSEADQKIHPCA 602 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCE--VYTDHRSLQYVFTQKYLN 1610 Y SR+ ERNY + EL AV AL +WKH+L G K V++DH++L YV T K LN Sbjct: 603 YFSRRFDPAERNYDVGNRELLAVYGALVEWKHWLEGAKHPFLVWSDHKNLTYVRTAKRLN 662 Query: 1611 LRQRRWMELLKDYDITILYHPEKANVVADALSRK 1712 RQ RW L +D T+ + P N+ ADALSR+ Sbjct: 663 PRQGRW-ALFSRFDFTLTFRPGSKNIRADALSRQ 695 Score = 195 bits (490), Expect = 3e-047 Identities = 111/335 (33%), Positives = 173/335 (51%), Gaps = 2/335 (0%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 HPG + +++ FWW ++ D+ EFV C C + K H+ P G L +P+P W Sbjct: 768 HPGVRRTAEFVQRRFWWPNLQEDVREFVGACTVCARSKASHRSPAGLLHPLPVPSRPWSH 827 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 +A+DFV G P + G D+I IVDR +K HF+ + +A + A+L +S V+RLHG+PL Sbjct: 828 VALDFVTGLPVSQGN-DTILTIVDRFSKGVHFVALPKLPSAAETAELLVSHVVRLHGIPL 886 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 ++SDR +FTS W+ + +G V L + +HP ++GQ+ER Q +E LR Sbjct: 887 DVVSDRGPQFTSRVWQAFCKGIGATVSLSSGYHPQSNGQAERANQAMEAALRCVTTSNPA 946 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVR-PWGTDLLRESLD 2776 W FLP E+S N S+ M+PF+ G + P+ E+ P LR Sbjct: 947 SWSKFLPWVEYSLNAMESSATGMSPFQCFLG--YQPPLFPQQELEIAVPSTRAHLRRCRR 1004 Query: 2777 KVKCIQEKHLAAQSRKKKYVVQKVRDF-EFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYI 2953 K ++ L A + ++ ++ R + G++V L + KL+PR I Sbjct: 1005 IWKTARKAILRATEQSRRSANRRRRPAPAYRPGQKVWLLARDLPLQTSQTSSRKLNPRDI 1064 Query: 2954 GPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTY 3064 GP+ + + A L LP L VHPVF+VS++K + Sbjct: 1065 GPYTICSIINPSAVHLDLPAALK-VHPVFHVSLIKPF 1100 >dbj|BAA75236.1| (AB014750) polyprotein [Nicotiana tabacum] Length = 265 Score = 337 bits (856), Expect = 4e-090 Identities = 161/265 (60%), Positives = 203/265 (75%) Frame = +3 Query: 912 LDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 LD FV++FID+IL+YS+S ++H+ HLR+VL LRE +LYAK SKCEFWL V FLGHV+S Sbjct: 1 LDEFVVVFIDNILIYSQSKEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 60 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 V VDP + V W++P VT VRSF+GLA YYRRF++ FS +A +T L K+ Sbjct: 61 AKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEKF 120 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQ 1451 VWS +CE++FQ L L ++P+L LP K+F+VYCDAS GLG LM++ +V+AYASRQ Sbjct: 121 VWSPQCEKAFQTLKEKLVSSPVLILPDTHKDFMVYCDASRQGLGCVLMQDGHVVAYASRQ 180 Query: 1452 LKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWM 1631 L+ HE NYPTHDLELAAVV ALK W+HYL G +CE+ TDH+SL+Y+FTQ LNLRQRRW+ Sbjct: 181 LRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEISTDHKSLKYIFTQSDLNLRQRRWL 240 Query: 1632 ELLKDYDITILYHPEKANVVADALS 1706 EL+KDYD+ I HP KANVVADALS Sbjct: 241 ELIKDYDVGIHNHPGKANVVADALS 265 >dbj|BAA75238.1| (AB014753) polyprotein [Morus bombycis] Length = 265 Score = 336 bits (852), Expect = 1e-089 Identities = 159/265 (60%), Positives = 202/265 (76%) Frame = +3 Query: 912 LDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 LD FV++FIDDIL+YS+S ++H+ HLR+VL LRE +LYAK SKCEFWL V FLGHV+S Sbjct: 1 LDEFVVVFIDDILIYSQSEEDHQQHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 60 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 V VDP + V W++P VT VR+F+GLA YYRRF++ FS +A +T L K+ Sbjct: 61 AKGVAVDPETVTAVTDWKQPKTVTQVRNFLGLAGYYRRFIENFSKIARPMTQLLKKEEKF 120 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQ 1451 VWS +CE++FQ L ++P+ LP K+F+VYCDAS GLG LM++ +V+AYASRQ Sbjct: 121 VWSPQCEKAFQTLKEKPVSSPVFILPDTRKDFMVYCDASRQGLGCVLMQDGHVVAYASRQ 180 Query: 1452 LKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWM 1631 L+ HE NYPTHDLELAAVV ALK W+HYL +CE+YTDH+SL+Y+FTQ LNLRQRRW+ Sbjct: 181 LRPHEGNYPTHDLELAAVVHALKIWRHYLIENRCEIYTDHKSLKYIFTQSDLNLRQRRWL 240 Query: 1632 ELLKDYDITILYHPEKANVVADALS 1706 EL+KDYD+ I +HP KANVVADALS Sbjct: 241 ELIKDYDVGIHHHPGKANVVADALS 265 >gb|AAA33420.1| (L35053) endonuclease [Pyricularia grisea] Length = 1199 Score = 333 bits (844), Expect = 9e-089 Identities = 182/448 (40%), Positives = 261/448 (57%), Gaps = 9/448 (2%) Frame = +3 Query: 381 VREFLDVF-PTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSK 557 +REF DVF P + +PP R D I L G P P Y M+ K Sbjct: 209 IREFADVFSPQEAEKLPPHRPSDHHIPLIEGKTPPFGPLYAMSREELIALKEWLTAELKK 268 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 GF RPS+S SPVLFVKK+ G R C+DY+ LN + VK++YPLP + + L G F Sbjct: 269 GFIRPSSSSVASPVLFVKKQGGGLRFCVDYRALNNITVKDRYPLPLVRETLNNLAGMKFF 328 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLD 917 SKID S ++ ++I+ + TAF TR+ YE LVM FGLT APA F +N L+ YLD Sbjct: 329 SKIDIVSAFNNIRIKKGEEYLTAFRTRFGLYESLVMPFGLTGAPATFQRYINDSLREYLD 388 Query: 918 LFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD 1097 +F ++DDIL+YS++ EHE HL++VLE LR+ LYA +KCEF++ FLG +V + Sbjct: 389 VFCTAYLDDILIYSRTRTEHEEHLKLVLEALRKAGLYANAAKCEFFVTETKFLGLLVGVE 448 Query: 1098 *VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVW 1277 V +DP KI V W+ P +T V++F+G ++YRRF++ FS + + LT LTK+ V W Sbjct: 449 GVKMDPEKITAVLDWQTPKKLTDVQAFLGFGNFYRRFIRDFSKIVAPLTRLTKKDVAFEW 508 Query: 1278 SDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE------KNVIAY 1439 + CE +F+ L T AP+L K+ I+ DAS + + A ++ + +A+ Sbjct: 509 NSACETAFRLLKRKFTEAPVLAHFDWEKDVILETDASDY-VSAGILSQYGDDGILRPVAF 567 Query: 1440 ASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVK--CEVYTDHRSLQYVFTQKYLNL 1613 S++ E NY +D EL A++ ++W+ L G ++ TDHR+L+Y T K LN Sbjct: 568 FSKKHTATECNYEIYDKELLAIIRCFEEWRPELEGTSSPVQIITDHRNLEYFTTTKMLNR 627 Query: 1614 RQRRWMELLKDYDITILYHPEKANVVADALSRKAGSM 1724 RQ RW E L ++ I Y P K DAL+R++ M Sbjct: 628 RQARWAEFLSRFNFRITYRPGKQGAKPDALTRRSEDM 664 Score = 192 bits (483), Expect = 2e-046 Identities = 116/333 (34%), Positives = 173/333 (51%), Gaps = 4/333 (1%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 HPG K Y L + ++W M + +V +C C+++ + G L+ +P P+ W+ Sbjct: 780 HPGKAKTYDLLSREYYWPGMLHYVSLWVKKCQTCRRINPSREGHQGLLRPLPTPERSWQH 839 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 ++MDF+ P++ G +D+I V+VDRLTK HF+P K T NAE A LY+ V +LHG+PL Sbjct: 840 LSMDFITHLPQSNG-HDAILVVVDRLTKMRHFVPCKGTCNAEDTANLYLHHVWKLHGLPL 898 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I+SDR T+F S FWK L L L T HP TDGQ+ER LE LRA V Sbjct: 899 TIVSDRGTQFVSKFWKHLTTRLKIDSLLSTAHHPETDGQTERFNASLEQYLRAYVAYLQD 958 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDK 2779 W+S+LPLAEF+ N+ + +PF A YG R E + P D + + Sbjct: 959 DWESWLPLAEFTANSHKSETTGTSPFYATYGFHPRMGFEPVPLNQPLPAQRDAEKLAARM 1018 Query: 2780 VKCIQEKHLAAQSRKKKYVVQKVRD----FEFMEGEQVLLKVSPMKGVMWFGKRGKLSPR 2947 +++ + + +Y Q R G+ V L + + + KL + Sbjct: 1019 EAILEQARAEMTAAQARYEEQANRHRTPARRLTVGQYVWLDA---RNIQTARPQKKLDWK 1075 Query: 2948 YIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLK 3058 +GPF++ + + AY L LP + VHPVF ++ LK Sbjct: 1076 NLGPFRISEVISPYAYRLDLPSSMR-VHPVFNINRLK 1111 >dbj|BAA75237.1| (AB014751) polyprotein [Ipomoea nil] Length = 265 Score = 324 bits (821), Expect = 4e-086 Identities = 155/265 (58%), Positives = 201/265 (75%) Frame = +3 Query: 912 LDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 LD FV++FIDDIL+YS+S ++H+ HLR+VL LRE +LYAK SKCEFWL V FLGHV+S Sbjct: 1 LDEFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 60 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 V VDP + V ++P VT +RSF+G+A YYRRF++ FS +A +T L K+ Sbjct: 61 AKGVAVDPETVTAVTDGKQPKTVTQIRSFLGVAGYYRRFIENFSEIARPMTQLLKKEEEF 120 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQ 1451 VWS +CE++FQ L L ++P+L LP K+F+V+CDA GLG LM++ +V+AYASRQ Sbjct: 121 VWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVHCDALRQGLGCVLMQDGHVVAYASRQ 180 Query: 1452 LKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWM 1631 L+ HE NYPTHDLE AAVV ALK +H+L G +CE+YTDH+SL+Y+FTQ LNLRQRRW+ Sbjct: 181 LRPHEGNYPTHDLESAAVVHALKIRRHHLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWL 240 Query: 1632 ELLKDYDITILYHPEKANVVADALS 1706 EL+KDYD+ I +HP KANVVADALS Sbjct: 241 ELIKDYDVGIHHHPGKANVVADALS 265 >gb|AAD24647.1|AC006220_3 (AC006220) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 780 Score = 316 bits (800), Expect = 1e-083 Identities = 178/467 (38%), Positives = 258/467 (55%), Gaps = 2/467 (0%) Frame = +3 Query: 378 IVREFLDVF--PTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXX 551 +V EF D+F PTDLP P D I+L + P++ Y Sbjct: 10 VVTEFPDIFVEPTDLP--PFRAPHDHKIELLEDSNPVNQRPYRYVVHQKNEIDKIVDDML 67 Query: 552 SKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGAC 731 + G + S+SP+ SPV+ VKKKDG++R+C+DY++LN + VK+++P+P I++L D+L G+ Sbjct: 68 ASGTIQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGSN 127 Query: 732 TFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPY 911 +SKID +GYHQ+++ D+ KTAF T HYE+LVM FGLTNAPA+F SLMN KP+ Sbjct: 128 VYSKIDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMNSFFKPF 187 Query: 912 LDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 L FV++F DDIL+YS S +EH+ HL V E++R L+AK SKC F + V +LGH +S Sbjct: 188 LRKFVLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLFAKMSKCAFAVPRVEYLGHFIS 247 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + DP KI+ V+ W P N+ + F+GL YYRRF Sbjct: 248 GEGIATDPAKIKAVQDWPVPVNLKQLCGFLGLTGYYRRF--------------------- 286 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQ 1451 F+V DA G+GA LM+E + +A+ SRQ Sbjct: 287 -------------------------------FVVEMDACGHGIGAVLMQEGHPLAFISRQ 315 Query: 1452 LKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWM 1631 LK + + ++ EL AV+F +++W+HYL + TD RSL+Y+ Q+ Q++W+ Sbjct: 316 LKGKQLHLSIYEKELLAVIFVVRKWRHYLISSHFIIKTDQRSLKYLLEQRLNTPIQQQWL 375 Query: 1632 ELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQ 1778 L ++D I Y K N+VADALSR GS V L +E+Q Sbjct: 376 PKLLEFDYEIQYKQGKENLVADALSRVEGSEVLHMALSVVECDLLKEIQ 424 Score = 98.7 bits (242), Expect = 4e-018 Identities = 49/127 (38%), Positives = 73/127 (56%) Frame = +2 Query: 2048 GLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKF 2227 G+ H G ++ +K F+W M +DI F+ C CQ+ K ++ G LQ +PIP Sbjct: 483 GMGGHSGKEVTHQRVKGLFYWKSMVKDIQAFIRSCGTCQQCKSDNAASPGLLQPLPIPDR 542 Query: 2228 KWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLH 2407 W ++MDF+ G P + GK I V+VDRL+K+AHFI + Y+A A+ Y+ V +LH Sbjct: 543 IWSDVSMDFIDGLPLSNGK-TVIMVVVDRLSKAAHFIALAHPYSAMTVAQAYLDNVFKLH 601 Query: 2408 GVPLPII 2428 G P I+ Sbjct: 602 GCPSSIV 608 Score = 74.5 bits (180), Expect = 7e-011 Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 4/152 (2%) Frame = +2 Query: 2666 MAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKCIQEKHLAAQSRKKKYVVQK 2845 M P+EA+YG+ + + ++E + ++ + AQ R K+ Q Sbjct: 625 MTPYEAVYGQPPPLHLPYLPGESKVAVVARSMQERESMILFLKFHLMRAQHRMKQLADQH 684 Query: 2846 VRDFEFMEGEQVLLKVSPMKGV-MWFGKRGKLSPRYIGPFKVLKRVGEVAYELALPPGLS 3022 + + EF G+ V +K+ P + + KLSP+Y GP+KV+ R GEVAY+L LP S Sbjct: 685 ITEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGEVAYKLQLPAN-S 743 Query: 3023 GVHPVFYVSMLKTYHG---DGNYIIRWDSVLLDENL 3121 VHPVF+VS L+ G +++R + L ENL Sbjct: 744 QVHPVFHVSQLRVLVGTVTTSTHLLRCYLMSLRENL 779 >gb|AAF79797.1|AC020646_20 (AC020646) T32E20.30 [Arabidopsis thaliana] Length = 1397 Score = 311 bits (789), Expect = 3e-082 Identities = 173/441 (39%), Positives = 249/441 (56%), Gaps = 3/441 (0%) Frame = +3 Query: 411 DLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWG 590 +L G+PP + + I L PGTR IS+ Y G R S SP+ Sbjct: 506 NLKGLPPIKGNEHAISLLPGTRAISVRPYRYPHAHKEAMEGLVSEMLDNGIIRASKSPFS 565 Query: 591 SPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQ 770 SPVL VKKKD S+R C+DY+ LN+ + NK+P+P ID L D+L GA FSK+D +GYHQ Sbjct: 566 SPVLLVKKKDQSWRFCVDYRALNRATIPNKFPIPMIDQLLDELHGAIIFSKLDLRAGYHQ 625 Query: 771 LKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDIL 950 ++++ D+ KT F T H+EFLVM FGL+NAPA F S MN +L+P+L FV++F DDIL Sbjct: 626 IRMKVEDIEKTTFRTHDGHFEFLVMPFGLSNAPATFQSSMNDMLRPFLRKFVLVFFDDIL 685 Query: 951 VYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEV 1130 +YS++ +EHE HL +VL++L E + YA K H+ V DP K Sbjct: 686 IYSRNEQEHEEHLAMVLKVLEEHQFYANRKKPY----------HITQG--VSTDPTKTVA 733 Query: 1131 VKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKL 1310 + W P +V +R F+GL YYRRF+KG+ ++A LT L K+ VWS+ +E+F L Sbjct: 734 MTKWVTPQSVKELRGFLGLTGYYRRFLKGYGTLARPLTELLKKD-SFVWSESAQEAFDAL 792 Query: 1311 NTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDL 1490 ++TAP+L LP GK GL + QLK P ++ Sbjct: 793 KRAMSTAPVLALPDFGK---------VHGL------------TSKEQLK------PVYER 825 Query: 1491 ELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYH 1670 EL A+V ++++WKHYL G + ++TD +SL+++ Q+ +++ ++W+ L Y+ ILY Sbjct: 826 ELMAIVLSIQKWKHYLMGRRFVLHTDQKSLKFLQEQREVSMDYQKWLTKLLHYEFDILYK 885 Query: 1671 PEKANVVADALSR---KAGSMESL 1733 N AD LSR GS S+ Sbjct: 886 LGVDNKAADGLSRMVQPTGSFSSM 909 Score = 248 bits (626), Expect = 3e-063 Identities = 153/409 (37%), Positives = 219/409 (53%), Gaps = 3/409 (0%) Frame = +2 Query: 2051 LSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFK 2230 L H G K + ++Q F W M +DI +FVA+C CQ+ KY P G LQ +PIP Sbjct: 986 LGGHSGVLKTMKRIQQSFHWEGMMKDIQKFVAKCEMCQRQKYSTLSPAGLLQPLPIPTQV 1045 Query: 2231 WEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHG 2410 WE I++DFV G P DRL+K HFI +K +NA A+++I EV++LHG Sbjct: 1046 WEDISLDFVEGLP-------------DRLSKYGHFIGLKHPFNAVDVARIFIHEVVKLHG 1092 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 P I+SDR F S FWK + GT++ T FHP TDGQ+E + LE LR Sbjct: 1093 FPASIVSDRDNTFLSSFWKDCFKLSGTKLKYSTAFHPQTDGQTEVLNRTLETYLRCFASA 1152 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRES 2770 W +LP AE YN+S+ ++I PF+ LYGR PI F+A + + L + Sbjct: 1153 HPKTWFQYLPRAELWYNSSFHTTIKTTPFKVLYGRD-PPPIMRFEANSTKNCELEGLLKQ 1211 Query: 2771 LDKVKCIQEKHLA-AQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKR--GKLS 2941 D + ++HL AQ K + R+ EF +V LK+ P + KR KL+ Sbjct: 1212 RDLMLADIKEHLVNAQQLMKNNDDKHRREVEFDTRNRVFLKLRPYRQNS-VTKRVCQKLA 1270 Query: 2942 PRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENL 3121 +Y GPF++++R+G+VAY L LP G S +H VF+VS LK GD + +I VL +N Sbjct: 1271 AKYFGPFEIMERIGKVAYRLKLPEG-SKIHLVFHVSQLKQVLGDHHQVIPLPEVLTADN- 1328 Query: 3122 SYEEEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYPHL 3277 + P A+L+ + + V W+ PV E TWE D+++++P L Sbjct: 1329 EFVVVPEAVLE---TRYNEDGLLEALVHWQGLPVHEDTWEIAKDLKKQFPGL 1377 >gb|AAD39272.1|AC007203_4 (AC007203) Similar to retrotransposon polyprotein [Arabidopsis thaliana] Length = 1264 Score = 309 bits (783), Expect = 1e-081 Identities = 172/454 (37%), Positives = 248/454 (53%), Gaps = 3/454 (0%) Frame = +3 Query: 348 TQIPSIESVSIVREFLDVFPTDLP---GMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXX 518 + + ++E + +V L FPT +PP R ++ I L+PG I + SY Sbjct: 338 SSLATMEMLPVVEVVLSEFPTIFDIHIELPPFRGLEHSISLKPGVSSIIVRSYRYPHATN 397 Query: 519 XXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHI 698 G RP+ P +K+P+P I Sbjct: 398 VVLEKMVEVMLVTGIIRPTTIP------------------------------DKFPIPVI 427 Query: 699 DNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAF 878 + L D+L GA FSKID SGYHQ++++ D+ KTAF T HYEFLVMSFGLTNAPA F Sbjct: 428 ELLLDELHGAMIFSKIDLCSGYHQIRMKPEDIEKTAFHTLEGHYEFLVMSFGLTNAPATF 487 Query: 879 MSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWL 1058 S MN I K L FV++F D IL+YS S + H HLR VL++L + KLY KC F + Sbjct: 488 QSSMNRISKKLLRKFVLVFFDHILIYSPSVESHVKHLREVLQLLADNKLYENMKKCSFGV 547 Query: 1059 D*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQ 1238 V +LGH++S + V+ D K E + +W+ P+N+ +R F+GL YY +FV+G+ S+A Sbjct: 548 QQVEYLGHIISAEGVVTDSTKTEAMHNWQVPSNLKQLRGFLGLTGYYIKFVRGYGSIAKT 607 Query: 1239 LTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK 1418 LT L K+ +W +++F+++ + AP+L P K F + D G+GA LM+ Sbjct: 608 LTELLKRD-KFLWLTMTQDAFEQVKQAMILAPVLGFPDFDKVFFLETDVFGTGVGAVLMQ 666 Query: 1419 EKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQ 1598 EK I Y S L E+ ++ EL A+V + +WKHYL G K +V+TD RSL+++ Q Sbjct: 667 EKRRITYFSHDLTPREQLKSAYERELMAIVMDVLKWKHYLIGRKFKVHTDQRSLKFLLEQ 726 Query: 1599 KYLNLRQRRWMELLKDYDITILYHPEKANVVADALSR 1709 K +N+ +RW+ L D+ I+Y P AN AD LSR Sbjct: 727 KEVNMEYQRWLTRLLGCDMDIVYKPGVANKAADGLSR 763 Score = 167 bits (419), Expect = 6e-039 Identities = 110/347 (31%), Positives = 184/347 (52%), Gaps = 3/347 (0%) Frame = +2 Query: 2231 WEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHG 2410 WE I++DF+ G P T G + I V+VDRL+K+ +F+ +K + A A ++SEV++L+G Sbjct: 847 WEDISVDFIEGLP-TSGGVNVILVVVDRLSKAVYFLGLKHLFKAIDVANKFVSEVVKLYG 905 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 P I+SDR F WK + + GT++ T + P TDGQ+E + LE LR Sbjct: 906 FPKSIVSDRDRIFLGAVWKDMFKLSGTQLKHSTSYRPQTDGQTEVLNRCLETYLRCFTSS 965 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDL-LRE 2767 W +L EFS+N +Y S++ +PF+ +YGR S + F+ W ++ L+E Sbjct: 966 HPRAWHKYLAWVEFSFNTAYHSALKTSPFKVVYGRDPPSLVR-FELGSTDNWDLEVQLKE 1024 Query: 2768 SLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKR-GKLSP 2944 ++ I+ AQ K+ K RD F G+ V LK+ P + + KL+ Sbjct: 1025 RDLMLEHIRANLQRAQEIMKRNADMKRRDVVFAVGDWVHLKLQPYRQRTVVRRPCYKLAA 1084 Query: 2945 RYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWD-SVLLDENL 3121 ++ GPF++++R+G VAY + LP S +H VF VS LK G+ + + L+++ Sbjct: 1085 KFFGPFEIVERIGNVAYRINLPAS-SKIHNVFNVSQLKKVFGEQQVVQATNPPKLVEDEF 1143 Query: 3122 SYEEEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYP 3271 + E+ I+D ++E V+W++R V E++W + + +P Sbjct: 1144 LFPEK---IVDISFTDKGNKEFL---VKWQDRGVSENSWMPYKEFVQVFP 1187 >emb|CAA77891.1| (Z11866) Reverse Transcriptase [Cladosporium fulvum] Length = 1045 Score = 307 bits (777), Expect = 6e-081 Identities = 193/542 (35%), Positives = 299/542 (54%), Gaps = 30/542 (5%) Frame = +3 Query: 102 IDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKP----GTYPLVWEGDYTSTP-- 263 I L + +M D++ GM WL + ++D +T + P W+ Sbjct: 172 ITLDVTDMASHDIVLGMPWLRKHNPVIDWRRGVLTFRECECVIDIQPAQWQRSLADEARK 231 Query: 264 ----VHIIYFLRAKKMVSKGCLAFLA---HLI--DDTTQIPS----IESVSIVREFLD-- 398 + + R ++ S G + H + D + PS I +SI +E+ Sbjct: 232 QLNRIQLAPTRRTEEPPSTGTDTGVGPPGHEVTGSDGSNAPSKDTNISELSIPKEYRKWS 291 Query: 399 -VFPTDL--PGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTR 569 +F + +P + D I+++PG P P Y M+ +KG+ R Sbjct: 292 RLFEEERGKDALPKHQPWDHKINIQPGKEPPWGPLYQMSEKELQTLREWLKEKLAKGWIR 351 Query: 570 PSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKID 749 S S G+P +FV K +G R+ DY++LN++ +KN+YPLP+I+ D+L G+ ++KID Sbjct: 352 RSTSSAGTPCMFVPKANGKLRLVQDYRKLNEITIKNRYPLPNIEEAQDRLTGSDWYTKID 411 Query: 750 FSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVI 929 ++ +++ + KTAF TRY YEFLVM GLTNAPA+ L+N L+ LD+ V+ Sbjct: 412 LRDAFYAIRMAEGEEWKTAFRTRYGLYEFLVMPMGLTNAPASCQDLVNETLRDLLDVCVV 471 Query: 930 LFIDDILVYSK-SNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VM 1106 ++DDILVY+K S +EH ++ V E L + KCEF V FLG ++S + Sbjct: 472 AYMDDILVYTKGSLQEHTKQVQDVFERLTKSGFKTAPEKCEFHKKEVKFLGFIISTTGIT 531 Query: 1107 VDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDE 1286 +DP K + ++ W P V V+SF+GLA+Y R+F+K +S A+ +T LT++ V W E Sbjct: 532 IDPAKTQSIREWPEPKTVKDVQSFLGLANYNRKFIKDYSKTAAPMTMLTRKDVNWKWGKE 591 Query: 1287 CEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK----EKNVIAYASRQL 1454 E+F++L +AP L L K + DAS +GA L + +++ +AY SR++ Sbjct: 592 QTEAFKRLKEQCASAPTLRLFDGSKEVHIETDASDMAIGACLTQTHDGKRHPVAYYSRKM 651 Query: 1455 KVHERNYPTHDLELAAVVFALKQWKHYLYG-VKCEVYTDHRSLQYVFTQKYLNLRQRRWM 1631 E+NY HD EL A+V A++ W+ Y+ G K + +DH++L Y T K L RQ RW Sbjct: 652 TTAEQNYDIHDKELLAIVAAMQHWRVYVEGPPKLTILSDHKNLTYFTTTKELTRRQARWS 711 Query: 1632 ELLKDYDITILYHPEKANVVADALSRKAGSME 1727 ELL Y I Y P N ADALSR++ ME Sbjct: 712 ELLGQYKFEIKYTPGTENGPADALSRRSDYME 743 Score = 152 bits (381), Expect = 2e-034 Identities = 81/217 (37%), Positives = 118/217 (54%), Gaps = 5/217 (2%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 HPG +K +++ F + +M+ ++ ++ +C +CQ+ K G LQ P W++ Sbjct: 811 HPGTSKTVDLIQRSFSFPQMRLKVLRYIKKCVHCQQNKAARHAKYGHLQFRTPPTKPWDE 870 Query: 2240 IAMDFVVGFPKTIGK-----YDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 + MDF+ P++ + YD I V+VDRLTK AHFIP Y AE+ L + +IR Sbjct: 871 VTMDFITKLPRSKDRVTGQAYDMILVMVDRLTKYAHFIPASEIYTAEQLGYLVLDRLIRY 930 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 HG P I+DR FTS +WKTL +G + L T +HP TDGQ+ERT Q LE LR + Sbjct: 931 HGFPEVFITDRDKLFTSNYWKTLMGTIGIKHKLSTAYHPETDGQTERTNQTLEQYLRHYI 990 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSP 2710 +W S LP+A+ + NN + PF R P Sbjct: 991 NYAQDNWVSLLPMAQIALNNHKSETTSTTPFMRTLARTLTYP 1032 >gb|AAF21678.1|AF051915_2 (AF051915) pol polyprotein [Cladosporium fulvum] Length = 1243 Score = 307 bits (777), Expect = 6e-081 Identities = 193/542 (35%), Positives = 299/542 (54%), Gaps = 30/542 (5%) Frame = +3 Query: 102 IDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKP----GTYPLVWEGDYTSTP-- 263 I L + +M D++ GM WL + ++D +T + P W+ Sbjct: 172 ITLDVTDMASHDIVLGMPWLRKHNPVIDWRRGVLTFRECECVIDIQPAQWQRSLADEARK 231 Query: 264 ----VHIIYFLRAKKMVSKGCLAFLA---HLI--DDTTQIPS----IESVSIVREFLD-- 398 + + R ++ S G + H + D + PS I +SI +E+ Sbjct: 232 QLNRIQLAPTRRTEEPPSTGTDTGVGPPGHEVTGSDGSNAPSKDTNISELSIPKEYRKWS 291 Query: 399 -VFPTDL--PGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTR 569 +F + +P + D I+++PG P P Y M+ +KG+ R Sbjct: 292 RLFEEERGKDALPKHQPWDHKINIQPGKEPPWGPLYQMSEKELQTLREWLKEKLAKGWIR 351 Query: 570 PSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKID 749 S S G+P +FV K +G R+ DY++LN++ +KN+YPLP+I+ D+L G+ ++KID Sbjct: 352 RSTSSAGTPCMFVPKANGKLRLVQDYRKLNEITIKNRYPLPNIEEAQDRLTGSDWYTKID 411 Query: 750 FSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVI 929 ++ +++ + KTAF TRY YEFLVM GLTNAPA+ L+N L+ LD+ V+ Sbjct: 412 LRDAFYAIRMAEGEEWKTAFRTRYGLYEFLVMPMGLTNAPASCQDLVNETLRDLLDVCVV 471 Query: 930 LFIDDILVYSK-SNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VM 1106 ++DDILVY+K S +EH ++ V E L + KCEF V FLG ++S + Sbjct: 472 AYMDDILVYTKGSLQEHTKQVQDVFERLTKSGFKTAPEKCEFHKKEVKFLGFIISTTGIT 531 Query: 1107 VDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDE 1286 +DP K + ++ W P V V+SF+GLA+Y R+F+K +S A+ +T LT++ V W E Sbjct: 532 IDPAKTQSIREWPEPKTVKDVQSFLGLANYNRKFIKDYSKTAAPMTMLTRKDVNWKWGKE 591 Query: 1287 CEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK----EKNVIAYASRQL 1454 E+F++L +AP L L K + DAS +GA L + +++ +AY SR++ Sbjct: 592 QTEAFKRLKEQCASAPTLRLFDGSKEVHIETDASDMAIGACLTQTHDGKRHPVAYYSRKM 651 Query: 1455 KVHERNYPTHDLELAAVVFALKQWKHYLYG-VKCEVYTDHRSLQYVFTQKYLNLRQRRWM 1631 E+NY HD EL A+V A++ W+ Y+ G K + +DH++L Y T K L RQ RW Sbjct: 652 TTAEQNYDIHDKELLAIVAAMQHWRVYVEGPPKLTILSDHKNLTYFTTTKELTRRQARWS 711 Query: 1632 ELLKDYDITILYHPEKANVVADALSRKAGSME 1727 ELL Y I Y P N ADALSR++ ME Sbjct: 712 ELLGQYKFEIKYTPGTENGPADALSRRSDYME 743 Score = 189 bits (474), Expect = 2e-045 Identities = 128/403 (31%), Positives = 199/403 (48%), Gaps = 13/403 (3%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 HPG +K +++ F + +M+ ++ ++ +C +CQ+ K G LQ P W++ Sbjct: 811 HPGTSKTVDLIQRSFSFPQMRLKVLRYIKKCVHCQQNKAARHAKYGHLQFRTPPTKPWDE 870 Query: 2240 IAMDFVVGFPKTIGK-----YDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 + MDF+ P++ + YD I V+VDRLTK AHFIP Y AE+ L + +IR Sbjct: 871 VTMDFITKLPRSKDRVTGQAYDMILVMVDRLTKYAHFIPASEIYTAEQLGYLVLDRLIRY 930 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 HG P I+DR FTS +WKTL +G + L T +HP TDGQ+ERT Q LE LR + Sbjct: 931 HGFPEVFITDRDKLFTSNYWKTLMGTIGIKHKLSTAYHPETDGQTERTNQTLEQYLRHYI 990 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLR 2764 +W S LP+A+ + NN + PF A +G+ P Sbjct: 991 NYAQDNWVSLLPMAQIALNNHKSETTSTTPFYANFGKD--------PNLSGTPGSHPQAE 1042 Query: 2765 ESLDKVKCIQEKHLAAQSR---KKKYVVQKVRDFEFM-----EGEQVLLKVSPMKGVMWF 2920 ++ + ++E H A+ ++ + Q+ +D M EG++V L +K Sbjct: 1043 RAIVTTETLKEVHKEARKAIEDAQQRLSQRRQDERKMAPLLKEGDKVYLLTKNLKTRR-- 1100 Query: 2921 GKRGKLSPRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDS 3100 + KL +GPF + K VG V Y L LPP + +HPVF++S L+ + Sbjct: 1101 -QTKKLDHVKVGPFFIDKVVGPVNYRLRLPPD-AKIHPVFHISKLEPADAE--------- 1149 Query: 3101 VLLDENLSYEEEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERY 3268 S+ EP A + EV K+ ++ V+WK E+TWE ++ Y Sbjct: 1150 --TPCQESFHFEPEAENEFEVEKILDKKGQRYLVKWKGYDESENTWEPRINLANCY 1203 >gb|AAC26251.1| (AF077408) contains similarity to reverse transcriptase (Pfam: rvt.hmm, score: 33.26) [Arabidopsis thaliana] Length = 973 Score = 224 bits (566), Expect(2) = 1e-078 Identities = 126/269 (46%), Positives = 167/269 (61%) Frame = +3 Query: 1254 KQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVI 1433 K S S W CE++F +L +LT AP+L LP EG+ + VY DAS GL LM++ +VI Sbjct: 368 KLSKCSFWQRSCEKNFLELKAMLTNAPVLVLPEEGEPYTVYTDASVVGLECVLMQKGSVI 427 Query: 1434 AYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNL 1613 AYASRQL+ HE+NYPTHDLE+AAVVFALK W+ YLYG K ++YTDH+SL+Y+FTQ LNL Sbjct: 428 AYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLYGAKVQIYTDHKSLKYIFTQPELNL 487 Query: 1614 RQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQTLAND 1793 RQRRWMEL+ DYD+ I YH KAN VADALSR+ +E+ SQV L + TL + Sbjct: 488 RQRRWMELVADYDLDIAYHAGKANQVADALSRRRSEVEA-ERSQVD---LVNMMGTLHVN 543 Query: 1794 LMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLIMFPYKELLGKANEAIIDEGGVL* 1973 + EV G A ++++ L +I+ Q DE++ + L E G + Sbjct: 544 ALSKEVEPLGLGAA---DQANLLSRIRLAQERDEEIKGW----ALNNKTEYQTSNNGTIV 596 Query: 1974 VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 V G VC+P + + IL E H K +H Sbjct: 597 VNGRVCVPNNRALKEEILREAHQSKFSIH 625 Score = 203 bits (510), Expect = 1e-049 Identities = 111/278 (39%), Positives = 156/278 (55%) Frame = +2 Query: 2459 FWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFLPLAEFSY 2638 FWK + LGTRV+L T +HP TDGQSERTIQ LEDMLRAC +++ G+W+ +L LA Sbjct: 690 FWKAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACALDWGGNWEKYLRLA---- 745 Query: 2639 NNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKCIQEKHLAAQS 2818 LYGR CR+P+ W E R +G ++ E+ +++K ++ K AQ Sbjct: 746 ---------------LYGRACRTPLCWTPVGERRLFGPIIVDETTERMKFLKIKLKEAQD 790 Query: 2819 RKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVLKRVGEVAYE 2998 R+K Y ++ ++ EF + V LK KG F R KLSPRY+GP+KV++RVG VAY+ Sbjct: 791 RQKSYANKRRKELEFQVEDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYK 850 Query: 2999 LALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVPKLRS 3178 L LPP L+ H VF+VS L+ + + L EN++ E PV I+DR R Sbjct: 851 LDLPPKLNAFHNVFHVSQLRKCLSNQEESVEDVPPGLKENMTVEAWPVQIMDRMTKGTRG 910 Query: 3179 REIASIKVQWKNRPVEESTWEKEADMQERYPHLFTDSG 3292 + +KV W E+ TWE E M+ + F + G Sbjct: 911 KSRDLLKVLWNCGGREQYTWETENKMKANFSEWFKEMG 948 Score = 132 bits (329), Expect = 2e-028 Identities = 62/90 (68%), Positives = 73/90 (80%) Frame = +3 Query: 786 TDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKS 965 TDV KTAF TRY H+EF+VM FGLTNAP AFM +MNG+ + +LD FVI+FIDDILVYSKS Sbjct: 286 TDVRKTAFLTRYGHFEFVVMPFGLTNAPTAFMKMMNGVFRDFLDEFVIIFIDDILVYSKS 345 Query: 966 NKEHE*HLRIVLEMLREKKLYAKFSKCEFW 1055 + H+ HLR VLE LRE +L+AK SKC FW Sbjct: 346 WEAHQEHLRAVLEQLREHELFAKLSKCSFW 375 Score = 97.1 bits (238), Expect(2) = 1e-078 Identities = 41/76 (53%), Positives = 56/76 (72%), Gaps = 1/76 (1%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+ K+YRDLK+++ W MK+D+ +VA+CP CQ VK EHQ+P G LQ +PIP++KW Sbjct: 623 SIHPGSNKIYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKW 682 Query: 2234 EKIAMDFV-VGFPKTIG 2281 + I MDF F K +G Sbjct: 683 DHITMDFFWKAFQKALG 699 >emb|CAB80807.1| (AL161498) putative transposon protein [Arabidopsis thaliana] Length = 973 Score = 224 bits (566), Expect(2) = 1e-078 Identities = 126/269 (46%), Positives = 167/269 (61%) Frame = +3 Query: 1254 KQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVI 1433 K S S W CE++F +L +LT AP+L LP EG+ + VY DAS GL LM++ +VI Sbjct: 368 KLSKCSFWQRSCEKNFLELKAMLTNAPVLVLPEEGEPYTVYTDASVVGLECVLMQKGSVI 427 Query: 1434 AYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNL 1613 AYASRQL+ HE+NYPTHDLE+AAVVFALK W+ YLYG K ++YTDH+SL+Y+FTQ LNL Sbjct: 428 AYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLYGAKVQIYTDHKSLKYIFTQPELNL 487 Query: 1614 RQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQTLAND 1793 RQRRWMEL+ DYD+ I YH KAN VADALSR+ +E+ SQV L + TL + Sbjct: 488 RQRRWMELVADYDLDIAYHAGKANQVADALSRRRSEVEA-ERSQVD---LVNMMGTLHVN 543 Query: 1794 LMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDEKLIMFPYKELLGKANEAIIDEGGVL* 1973 + EV G A ++++ L +I+ Q DE++ + L E G + Sbjct: 544 ALSKEVEPLGLGAA---DQANLLSRIRLAQERDEEIKGW----ALNNKTEYQTSNNGTIV 596 Query: 1974 VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 V G VC+P + + IL E H K +H Sbjct: 597 VNGRVCVPNNRALKEEILREAHQSKFSIH 625 Score = 203 bits (510), Expect = 1e-049 Identities = 111/278 (39%), Positives = 156/278 (55%) Frame = +2 Query: 2459 FWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFLPLAEFSY 2638 FWK + LGTRV+L T +HP TDGQSERTIQ LEDMLRAC +++ G+W+ +L LA Sbjct: 690 FWKAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACALDWGGNWEKYLRLA---- 745 Query: 2639 NNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKCIQEKHLAAQS 2818 LYGR CR+P+ W E R +G ++ E+ +++K ++ K AQ Sbjct: 746 ---------------LYGRACRTPLCWTPVGERRLFGPIIVDETTERMKFLKIKLKEAQD 790 Query: 2819 RKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVLKRVGEVAYE 2998 R+K Y ++ ++ EF + V LK KG F R KLSPRY+GP+KV++RVG VAY+ Sbjct: 791 RQKSYANKRRKELEFQVEDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYK 850 Query: 2999 LALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVPKLRS 3178 L LPP L+ H VF+VS L+ + + L EN++ E PV I+DR R Sbjct: 851 LDLPPKLNAFHNVFHVSQLRKCLSNQEESVEDVPPGLKENMTVEAWPVQIMDRMTKGTRG 910 Query: 3179 REIASIKVQWKNRPVEESTWEKEADMQERYPHLFTDSG 3292 + +KV W E+ TWE E M+ + F + G Sbjct: 911 KSRDLLKVLWNCGGREQYTWETENKMKANFSEWFKEMG 948 Score = 132 bits (329), Expect = 2e-028 Identities = 62/90 (68%), Positives = 73/90 (80%) Frame = +3 Query: 786 TDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKS 965 TDV KTAF TRY H+EF+VM FGLTNAP AFM +MNG+ + +LD FVI+FIDDILVYSKS Sbjct: 286 TDVRKTAFLTRYGHFEFVVMPFGLTNAPTAFMKMMNGVFRDFLDEFVIIFIDDILVYSKS 345 Query: 966 NKEHE*HLRIVLEMLREKKLYAKFSKCEFW 1055 + H+ HLR VLE LRE +L+AK SKC FW Sbjct: 346 WEAHQEHLRAVLEQLREHELFAKLSKCSFW 375 Score = 97.1 bits (238), Expect(2) = 1e-078 Identities = 41/76 (53%), Positives = 56/76 (72%), Gaps = 1/76 (1%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+ K+YRDLK+++ W MK+D+ +VA+CP CQ VK EHQ+P G LQ +PIP++KW Sbjct: 623 SIHPGSNKIYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPIPEWKW 682 Query: 2234 EKIAMDFV-VGFPKTIG 2281 + I MDF F K +G Sbjct: 683 DHITMDFFWKAFQKALG 699 >emb|CAA80824.1| (Z24451) pol protein [Drosophila ananassae] Length = 1040 Score = 299 bits (758), Expect = 1e-078 Identities = 175/527 (33%), Positives = 291/527 (55%), Gaps = 9/527 (1%) Frame = +3 Query: 129 DFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYTSTPVHIIYFLRA-KKMVS 305 D+DV+ G L+ I++ T+TL TYPL+ D S Y + +K + Sbjct: 53 DYDVLIGRKLLNKAQGIINYKTHTITLFDK-TYPLI---DTDSNKGQFFYTQDSYEKPIP 108 Query: 306 KGC--LAFLAHLIDDTTQIPSIESVSIVREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRP 479 K + F +D + + ++ +F D+ + + I ++ + P Sbjct: 109 KSDKKIDFSPFRLDHLNPEETYKLKHLLNKFKDLQYFEGERLTFTNTIKHVLNTTHNS-P 167 Query: 480 ISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGS-----FRMCID 644 I Y +A T +G R S SP+ SP V KK + +R+ ID Sbjct: 168 IYSKQYPLAQTHENEVENQVQEMLEQGLIRESNSPYNSPTWVVPKKPDASGKAKYRVVID 227 Query: 645 YKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYR 824 Y++LN++ + +++P+P++D + +L F+ ID + G+HQ+++ + + KTAF T+ Sbjct: 228 YRKLNEITIPDRFPIPNMDEILGKLGKCQYFTTIDLARGFHQIEMDSESIQKTAFSTKRG 287 Query: 825 HYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLE 1004 HYE++ M FGL NAPA F MN IL+P ++ ++++DD++++S S EH L++V E Sbjct: 288 HYEYVRMPFGLRNAPATFQRCMNNILRPLINKHCLVYLDDMIIFSTSLDEHLNSLQLVFE 347 Query: 1005 MLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVG 1184 L E L + KCEF +FLGH+V+ D + +P K+E + S+ PT V +R+F+G Sbjct: 348 KLSESNLKLQLDKCEFLKKEATFLGHIVTPDGIKPNPLKVEAIASYPIPTKVKEIRAFLG 407 Query: 1185 LASYYRRFVKGFSSVASQLTNLTKQSVP-SVWSDECEESFQKLNTLLTTAPILNLPVEGK 1361 + YYR+F+ ++ +A +T K+ + + E E+F+KL TL+T+ PIL LP K Sbjct: 408 MTGYYRKFIPSYADIAKPMTRYLKKGAKIDINNHEYVEAFEKLKTLITSEPILQLPNFEK 467 Query: 1362 NFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLY 1541 F++ DAS LGA L ++ + I++ SR L HE NY T + EL A+V+A K ++HYL Sbjct: 468 KFVLTTDASNLALGAVLSQDNHPISFISRTLNDHELNYSTIEKELLAIVWATKTFRHYLL 527 Query: 1542 GVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSR 1709 G ++ +DH+ L+++ K N + +RW L ++D I Y K N +ADALSR Sbjct: 528 GRHFQIASDHQPLRWLHNLKEPNAKLQRWRIRLAEFDFHIEYIKGKQNSIADALSR 583 >gb|AAA88791.1| (L34658) pol polyprotein [Fusarium oxysporum] Length = 1295 Score = 298 bits (754), Expect = 3e-078 Identities = 162/430 (37%), Positives = 256/430 (58%), Gaps = 8/430 (1%) Frame = +3 Query: 423 MPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVL 602 +P D D I L+ G P P Y ++ KG+ RPS S G PV+ Sbjct: 303 LPQHTDYDIEIVLKDGKNPKFFPIYNLSQDELGTLREWINDMIRKGYIRPSKSSAGFPVM 362 Query: 603 FVKKKDGS-FRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKI 779 FV K + + R+ +DY+QLN++ K++ LP I L D+L G F+ +D S Y+ ++I Sbjct: 363 FVPKPNSNKLRLVVDYRQLNEITEKDRTSLPLITELKDRLFGKKWFTALDLKSAYNLIRI 422 Query: 780 RATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYS 959 + D KTAF T+Y +E+LVM FGLTNAPA F ++ +L+ YLD+FV+ ++DDIL++S Sbjct: 423 KEADEWKTAFRTKYGLFEYLVMPFGLTNAPAVFQRMITNVLREYLDIFVVCYLDDILIFS 482 Query: 960 KSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKS 1139 + +EH H+ VL+ L++ + + +K F V++LGH +S + + +D KI V Sbjct: 483 DTEEEHTEHVHKVLKALQDANMLVEPTKSHFHQSQVTYLGHEISHNEIRMDRRKIAAVAE 542 Query: 1140 WERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTL 1319 W+ PT+V +SF+G A+YYRRF+K FS A LT +TK+ W+D+ +E+F+KL + Sbjct: 543 WKVPTSVKETQSFLGFANYYRRFIKDFSKTAIPLTEITKKDKQFQWNDKAQEAFEKLKSA 602 Query: 1320 LTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK-----NVIAYASRQLKVHERNYPTH 1484 +T+ P+L + + + DAS + LG + + + IA+ S ++ E NYP + Sbjct: 603 ITSEPVLVMFDPDRQVELETDASDFALGGQIGQRDDNGVLHPIAFYSHKMHGAELNYPIY 662 Query: 1485 DLELAAVVFALKQWKHYLYGVK--CEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDIT 1658 D E A+V K+++HYL G K +V+TDH+++ Y T + LN RQ R+ E L ++D T Sbjct: 663 DKEFLAIVNCFKEFRHYLRGSKHPVKVFTDHKNIAYFATTQELNRRQLRYAEYLCEFDFT 722 Query: 1659 ILYHPEKANVVADALSRK 1712 I + N ADA+SR+ Sbjct: 723 IAHCKGTDNGRADAISRR 740 Score = 189 bits (476), Expect = 1e-045 Identities = 126/397 (31%), Positives = 200/397 (49%), Gaps = 9/397 (2%) Frame = +2 Query: 2051 LSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFK 2230 L H G TK + L++ + K + + + QC C K K + P G LQ +P+ + Sbjct: 876 LHGHQGVTKTMKRLQELGYRHFKKGQVEKVIKQCDLCAKTKAQRHKPYGQLQPLPVAQRP 935 Query: 2231 WEKIAMDFVVGFP-----KTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEV 2395 W+ I MDF+ P T YDSI VIVDRLTK ++++P + +AE+ + ++ + Sbjct: 936 WDSITMDFITKLPLSEEPSTGIFYDSIMVIVDRLTKFSYYLPYREATDAEELSYVFYRHI 995 Query: 2396 IRLHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLR 2575 + +HG+P I+SDR F + FW++L LG L T F P DGQ+ER QVLE LR Sbjct: 996 VSIHGLPTEILSDRGPTFAATFWQSLMARLGLNHRLTTAFRPQVDGQTERMNQVLEQYLR 1055 Query: 2576 ACVVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTD 2755 + W LP+A+ +YN +Y S + P A +G +P + +A + Sbjct: 1056 CYINYEQNDWVEKLPIAQLAYNTAYNESTKLTPAYANFG---FTPNAYHNARPEKSINPA 1112 Query: 2756 LLRESLDKVKCIQ----EKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFG 2923 + +S D + E + K Y ++++ F EG+ V L K + Sbjct: 1113 AIIKSEDMQDLHEYLKTELEFVRKRMKNYYDPKRLKGPTFSEGDMVYLAT---KNIKTDR 1169 Query: 2924 KRGKLSPRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYIIRWDSV 3103 KL ++IGP+KVL+++ E Y+L LPP + +HP+F+VS+L++ + Sbjct: 1170 PSHKLDYKFIGPYKVLQKISENNYKLDLPPKVR-LHPIFHVSLLESAADTIQVKTGNEPR 1228 Query: 3104 LLDENLSYEEEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWE 3241 + YE E + R+ K+ + IK WKN P E+TWE Sbjct: 1229 EISGPEVYEAEAI----RDTRKINGQREYLIK--WKNYPENENTWE 1268 >gb|AAF36671.1|AF222049_2 (AF222049) pol protein [Drosophila melanogaster] Length = 1037 Score = 297 bits (753), Expect = 4e-078 Identities = 161/399 (40%), Positives = 242/399 (60%), Gaps = 8/399 (2%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKK-----DGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 +G R S SP+ SP+ V+KK +R+ +DY++LNK +++++P+P+ID +FD+L Sbjct: 158 QGIIRHSKSPYNSPLWVVQKKMDQSNKQKWRLVVDYRKLNKETIEDRFPIPNIDEIFDKL 217 Query: 720 QGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGI 899 FS +D + G++Q+++ DV KTAF T HYEFL M FGL NAP+ F LMN I Sbjct: 218 GDCKIFSTLDLAKGFYQIEMDNKDVHKTAFSTTSGHYEFLRMPFGLRNAPSTFQRLMNNI 277 Query: 900 LKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG 1079 L PY F I+++DDIL++SK+ EH HL + L + L + KCEF + + FLG Sbjct: 278 LSPYTGQFCIVYMDDILIFSKNIGEHVNHLSCIFSCLSKANLKLQSDKCEFAREEIEFLG 337 Query: 1080 HVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTN-LTK 1256 H ++ + + KI+ + PTN ++SF+G+ Y RR++K +S +A L L K Sbjct: 338 HTINSEGLKPSQKKIDAICKINLPTNQKQIKSFLGITGYLRRYIKDYSKIAQPLIKYLKK 397 Query: 1257 QSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIA 1436 S + E+FQKL L+T+ PI+ P K F + DAS + LGA LM++ VI+ Sbjct: 398 NSKINTHDQXYVEAFQKLKILITSDPIVVYPDFNKQFTIVTDASNYALGAVLMQDNKVIS 457 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLR 1616 YASR LK HE NY T + EL A+ ++ K +K+Y+YG K + TDHR L ++ K NL+ Sbjct: 458 YASRSLKNHELNYSTIEKELLAIYWSTKFFKYYIYGRKFIIKTDHRPLVWLNNLKEPNLK 517 Query: 1617 QRRWMELLKDYDITILYHPEKANVVADALSR--KAGSMESLAHSQVS 1751 +RW L ++D I + K N +AD LSR KA + E ++Q + Sbjct: 518 LQRWKVQLNEFDFDITFIKGKENALADGLSRIVKASTEEYDKNAQTN 564 >gb|AAD39271.1|AC007203_3 (AC007203) Similar to reverse-transcriptases [Arabidopsis thaliana] Length = 748 Score = 297 bits (753), Expect = 4e-078 Identities = 152/340 (44%), Positives = 216/340 (62%), Gaps = 1/340 (0%) Frame = +2 Query: 2249 DFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPII 2428 +FVV P + D+IWVIVDRLTKSAHF+ ++ T A K Y+SE+++LHGVP+ I+ Sbjct: 410 EFVV-IPFARAELDAIWVIVDRLTKSAHFLAIRKTDGAAVLTKKYVSEIVKLHGVPVSIV 468 Query: 2429 SDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWD 2608 SDR +KFTS FW+ E+GT+V + T +HP TDGQSERTIQ LEDMLR CV+++ GHW Sbjct: 469 SDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDWGGHWA 528 Query: 2609 SFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKC 2788 L L EF+YNN+YQ+SI M PFE LYGR CR+ + W E +G + ++E+ +++ Sbjct: 529 DQLSLIEFAYNNNYQASIGMTPFEVLYGRPCRTQLCWTQVGERSIYGANYVQETTERIGV 588 Query: 2789 IQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKV 2968 ++ Q R + Y ++ R+ EF GE+V LK++ ++G KLSPRY+GPF++ Sbjct: 589 LKLNMKEVQDRHRSYADKRRRELEFEVGERVYLKMAMLRGPNRSISETKLSPRYMGPFRI 648 Query: 2969 LKRVGEVAYELALPPGLSGVHPVFYVSML-KTYHGDGNYIIRWDSVLLDENLSYEEEPVA 3145 ++RV VAY L L + H VF+VSML K H D + + L N++ E P Sbjct: 649 VERVVPVAYRLELTDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPED-LQPNMTLEARPGR 707 Query: 3146 ILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERY 3268 +L+R + +LR ++I IKV W V E TWE E M+ R+ Sbjct: 708 VLERRIKELRRKKIPLIKVLWDCDGVTEETWEPEVRMKARF 748 Score = 70.6 bits (170), Expect = 1e-009 Identities = 33/62 (53%), Positives = 42/62 (67%) Frame = +3 Query: 696 IDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAA 875 ID L DQL+GA FSKID +SGYHQ+ I D+ KTAF TRY H+EF+V+ F A Sbjct: 365 IDELLDQLRGATCFSKIDLTSGYHQIPIAEADIRKTAFRTRYGHFEFVVIPFARAELDAI 424 Query: 876 FM 881 ++ Sbjct: 425 WV 426 Score = 47.3 bits (110), Expect = 0.011 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Frame = +3 Query: 282 LRAKKMVSKGCLAFLAHL-IDDTTQIPSIESVSIVREFLDVFPTDLPGMPPDRDIDFCID 458 + A+KM+ KGC A+L + + ++ ++ ++ +V+EF DVF + L G+PP F I Sbjct: 286 VEAEKMIEKGCEAYLMTISMPESVGQVAVSNIRVVQEFEDVFQS-LQGLPPSWSDPFTIV 344 Query: 459 LEPGTRPIS 485 LEPGT +S Sbjct: 345 LEPGTALLS 353 >dbj|BAA92703.1| (AB036885) reverse transcriptase [Tricholoma magnivelare] Length = 393 Score = 293 bits (743), Expect = 6e-077 Identities = 160/385 (41%), Positives = 238/385 (61%), Gaps = 9/385 (2%) Frame = +3 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 G RPS SP SP FVKKKDGS DY++LN + VKN YPLP I L +QL+GA F Sbjct: 1 GRIRPSKSPMASPFFFVKKKDGSLSPVQDYRRLNDITVKNHYPLPLISELVNQLRGAQYF 60 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKP-YL 914 +K+D GY+ ++I+ D K AF T +E LVM FGLTN+PA F ++MN I L Sbjct: 61 TKLDVHWGYNNVRIKEGDEWKAAFCTNCGLFEPLVMFFGLTNSPATFQTMMNNIFHDLIL 120 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 + V +++DDIL+++ + KEH R+VLE LR+ KLY + KCEF + +LG ++S+ Sbjct: 121 EGVVCIYLDDILIFTCTIKEHRRITRLVLERLRQYKLYLRQDKCEFEKTKIEYLGLIISE 180 Query: 1095 D*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSV 1274 V +DP K+ V +W PTN V+ F+G ++Y RF+K FS A L +LT + Sbjct: 181 GQVEMDPVKVNGVTAWPMPTNKKEVQPFLGFINFYWRFIKDFSHHARPLFDLTGKEAWR- 239 Query: 1275 WSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK------NVIA 1436 W + + +F+KL ++T+APIL + + F V D+S + +GA L ++ + + Sbjct: 240 WDNAQQGAFEKLKEMVTSAPILTFADDSRPFHVEADSSDFAMGAVLSQQSPEDQKWHPVV 299 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV--KCEVYTDHRSLQYVFTQKYLN 1610 + S+ L ERNY HD E+ A++ AL++W+H+L G K E++ DH++L+Y T K LN Sbjct: 300 FYSKSLSAVERNYEIHDKEILAIMGALEEWRHFLEGAQHKVEIWMDHKNLEYFMTAKKLN 359 Query: 1611 LRQRRWMELLKDYDITILYHPEKANVVADALSRK 1712 Q RW L +D ++ +HP ++ DALSR+ Sbjct: 360 RHQARWSLYLSRFDFSLHHHPGRSMGKTDALSRR 393 >gb|AAF48838.2| (AE003508) CG15054 gene product [Drosophila melanogaster] Length = 681 Score = 292 bits (739), Expect = 2e-076 Identities = 160/418 (38%), Positives = 245/418 (58%), Gaps = 7/418 (1%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKK-----DGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 +G R S SP+ SP+ V+KK +R+ +DY++LNK +++++P+P+ID +FD+L Sbjct: 82 QGIIRHSKSPYNSPLWVVQKKMDQSNKQKWRLVVDYRKLNKETIEDRFPIPNIDEIFDKL 141 Query: 720 QGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGI 899 FS +D + G++Q+++ DV KTAF T HYEFL M FGL NAP+ F LMN I Sbjct: 142 GDCKIFSTLDLAKGFYQIEMDNKDVHKTAFSTTSGHYEFLRMPFGLRNAPSTFQRLMNNI 201 Query: 900 LKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG 1079 L PY F I+++DDIL++SK+ EH HL + L + L + KCEF + + FLG Sbjct: 202 LSPYTGQFCIVYMDDILIFSKNIGEHVNHLSCIFSCLSKANLKLQSDKCEFAREEIEFLG 261 Query: 1080 HVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTN-LTK 1256 H ++ + + KI+ + PTN ++SF+G+ Y RR++K +S +A L L K Sbjct: 262 HTINSEGLKPSQKKIDAICKINLPTNQKQIKSFLGITGYLRRYIKDYSKIAQPLIKYLKK 321 Query: 1257 QSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIA 1436 S + E E+FQKL L+T+ PI+ P K F + DAS + LGA LM++ VI+ Sbjct: 322 NSKINTHDQEYVEAFQKLKILITSDPIVVYPDFNKQFTIVTDASNYALGAVLMQDNKVIS 381 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLR 1616 YASR LK HE NY T + EL A+ ++ K +K+Y+YG K + TDHR L ++ K NL+ Sbjct: 382 YASRSLKNHELNYSTIEKELLAIYWSTKFFKYYIYGRKFIIKTDHRPLVWLNNLKEPNLK 441 Query: 1617 QRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLARE-VQTLAND 1793 +RW L ++D I + E N+ L E +++ +++ + AND Sbjct: 442 LQRWKVQLNEFDFDITFIKEINNLDIFMLENTNTLPEVTPKTKIINEDFSKDLIHIFAND 501 Query: 1794 LMRLE 1808 + LE Sbjct: 502 IDDLE 506 >emb|CAA25702.1| (X01472) ORF 2, pot. reverse transcriptase [Drosophila melanogaster] Length = 1058 Score = 288 bits (729), Expect = 3e-075 Identities = 153/386 (39%), Positives = 238/386 (61%), Gaps = 6/386 (1%) Frame = +3 Query: 552 SKGFTRPSASPWGSPVLFV-KKKDGS----FRMCIDYKQLNKVNVKNKYPLPHIDNLFDQ 716 ++G R S SP+ SP+ V KK+D S FR+ IDY++LN++ V +++P+P++D + + Sbjct: 232 NQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGK 291 Query: 717 LQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNG 896 L F+ ID + G+HQ+++ V KTAF T++ HYE+L M FGL NAPA F MN Sbjct: 292 LGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMND 351 Query: 897 ILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFL 1076 IL+P L+ ++++DDI+V+S S EH L +V E L + L + KCEF +FL Sbjct: 352 ILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFL 411 Query: 1077 GHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTK 1256 GHV++ D + +P KIE ++ + PT +++F+GL YYR+F+ F+ +A +T K Sbjct: 412 GHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLK 471 Query: 1257 QSVP-SVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVI 1433 +++ + E + +F+KL L++ PIL +P K F + DAS LGA L ++ + + Sbjct: 472 KNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPL 531 Query: 1434 AYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNL 1613 +Y SR L HE NY T + EL A+V+A K ++HYL G E+ +DH+ L +++ K N Sbjct: 532 SYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNS 591 Query: 1614 RQRRWMELLKDYDITILYHPEKANVVADALSR 1709 + RW L ++D I Y K N VADALSR Sbjct: 592 KLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623 >dbj|BAA89272.1| (AB025309) Pol [Alternaria alternata] Length = 1265 Score = 287 bits (727), Expect = 5e-075 Identities = 169/443 (38%), Positives = 257/443 (57%), Gaps = 12/443 (2%) Frame = +3 Query: 384 REFLDVF-PTDLPGMPPDRD--IDFCIDLE-PGTRPISIPSYTMAPTXXXXXXXXXXXXX 551 +E+ +F P +PP R +D I+LE ++P P Y+M+ Sbjct: 225 QEYYGLFDPKAAEKLPPHRGPGVDHSIELELKDSQPPWGPLYSMSRGELLVLRKELTSLL 284 Query: 552 SKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGAC 731 KGF R S+SP +PVLF KK G R+CIDY+ LN + K++YPLP I + L A Sbjct: 285 EKGFIRVSSSPAAAPVLFAKKPGGGLRLCIDYRALNAITKKDRYPLPLIRETLNNLSKAK 344 Query: 732 TFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPY 911 F+K+D + +H++++ D KTAF TR+ +E+LV FG+ N+P+ F +N L+ + Sbjct: 345 WFTKLDVIAAFHKIRVAEGDEWKTAFRTRFGLFEWLVTPFGMANSPSTFQRYINWTLREF 404 Query: 912 LDLFVILFIDDILVYSK-SNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVV 1088 LD F ++DD+L+Y+ S K+H+ H+R VL L++ L KCEF + +LG ++ Sbjct: 405 LDDFCSAYLDDVLIYTDGSLKQHQEHVRKVLRKLQDAGLQVDIKKCEFEVKSTKYLGFII 464 Query: 1089 -SKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSV 1265 + + +DP K+ ++ WE P V VRSF+G A++YR+F+K FS +A+ LT LT V Sbjct: 465 KAGKGISMDPAKVAAIREWEAPQTVKGVRSFLGFANFYRKFIKNFSQLAAPLTRLT-GDV 523 Query: 1266 PSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK--EKNVI-- 1433 W E + +F KL + + P L + ++ D+S + +G L + + V+ Sbjct: 524 SFRWGPEEQSAFDKLKEIFVSEPTLASFDPERETVLETDSSGFAVGGVLSQYGDDGVLRP 583 Query: 1434 -AYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV-KCEVYTDHRSLQYVFTQKYL 1607 AY SR+ HE NY HD EL AVV L++W L V + +V TDH++L+Y + L Sbjct: 584 CAYFSRKNNAHECNYEIHDKELLAVVRCLEEWDSELRSVERFKVITDHKNLEYFMKPRML 643 Query: 1608 NLRQRRWMELLKDYDITILYHPEKANVVADALSRK 1712 N RQ RW LL Y++ +LY P K NV ADALSR+ Sbjct: 644 NERQIRWSLLLGRYNMELLYRPGKQNVRADALSRR 678 Score = 134 bits (334), Expect = 6e-029 Identities = 96/333 (28%), Positives = 155/333 (45%), Gaps = 13/333 (3%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 HPG Y+ L + ++W M + I +V C C + K + G L+ +PIP W++ Sbjct: 828 HPGREVTYKILARDYFWPGMTQTIRRYVRNCSTCGRSKSWREGKQGLLKPLPIPAQIWKE 887 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 I+MDFV G P++ G ++ VI DRL+K F+P+ + + +I V+ H +P Sbjct: 888 ISMDFVEGLPESEGM-TNLMVITDRLSKGTIFVPLP-NIKTDTVVQKFIERVVAYHWLPD 945 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I SDR +F S+ W L E L L T +HP TDG +ER V E +R+ Sbjct: 946 AITSDRGRQFVSVLWTKLCELLKINRRLSTAYHPQTDGATERMNSVWETYIRSFTNWAQN 1005 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPF-------------EALYGRRCRSPIEWFDAFEVR 2740 W P+A+ + N +S M+PF E G R + E + Sbjct: 1006 DWALLCPMAQIAINGRTATSTSMSPFFLQHGYEVNPLQIEPEVGSRASNQTEGLSDVQKA 1065 Query: 2741 PWGTDLLRESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWF 2920 L+++++ + + Q R+ ++ ++F G++V LK+ Sbjct: 1066 QVIASKLQQAIELAQASMAESQQEQERQANKTRREAQNFRV--GDKVWLKLDQQYST--- 1120 Query: 2921 GKRGKLSPRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLK 3058 G+ K + V++ V + EL PP G HPVF+V LK Sbjct: 1121 GRSSKKLDWKNAKYTVIRVVDSHSVELDTPP---GPHPVFHVDRLK 1163 >gb|AAC28743.1| (U60529) pol-like protein [Ceratitis capitata] Length = 1060 Score = 282 bits (713), Expect = 2e-073 Identities = 149/384 (38%), Positives = 236/384 (60%), Gaps = 18/384 (4%) Frame = +3 Query: 558 GFTRPSASPWGSPVLFVKKKDGS-----FRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQ 722 G RPS SP+ SPV V KK S +R+ IDY++LN V + ++YP+P I+ + L Sbjct: 222 GIIRPSRSPYNSPVWIVDKKPDSLGNKQYRLVIDYRKLNSVTIADRYPIPEINEVLSHLG 281 Query: 723 GACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGIL 902 FS ID SG+HQ+ ++ +D+ KTAF YEF + FGL NAP+ F ++ IL Sbjct: 282 SNTFFSVIDLKSGFHQIPLKNSDIEKTAFSINNEKYEFTRLPFGLKNAPSIFQRTLDDIL 341 Query: 903 KPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGH 1082 + Y+ ++IDDI+++S++ KEH HL+ + L + + + KC+F+ V FLG Sbjct: 342 RDYIGQCCYVYIDDIIIFSRNEKEHSTHLKNIFTTLEKANMKVQLDKCKFFEKEVEFLGF 401 Query: 1083 VVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTK-- 1256 +V+ + + +P KIE ++++ P N+ +RSF+GL+ YYRRFVK ++ +A LT L + Sbjct: 402 IVTPEGIKTNPSKIEAIQNFPIPRNLKELRSFLGLSGYYRRFVKDYAKLAKPLTALLRGE 461 Query: 1257 -------QSVPS--VWSDECEESFQKL-NTLLTTAPILNLPVEGKNFIVYCDASYWGLGA 1406 QS + DE + +K+ N L++ +L P K+F + DAS + +GA Sbjct: 462 EGRVSKSQSARAHITLGDEALAALEKIKNVLISRDVMLTYPNLNKDFELTTDASNYAIGA 521 Query: 1407 ALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYG-VKCEVYTDHRSLQ 1583 L +E I + SR L E NY ++ E+ A+++ALK ++YLYG K +++TDH+ L Sbjct: 522 VLSQEDRPITFISRTLTKTEENYAANEKEMLAIIWALKSLRNYLYGSAKVKIFTDHQPLT 581 Query: 1584 YVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSR 1709 Y + K N + +RW +L++Y+ + Y P K NVVAD LSR Sbjct: 582 YALSNKNNNSKMKRWKAILEEYNYELKYKPGKTNVVADGLSR 623 Score = 57.8 bits (137), Expect = 7e-006 Identities = 66/297 (22%), Positives = 119/297 (39%), Gaps = 5/297 (1%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H AT+ + ++F++ +M I + + QC C + KYE L+ P+P + Sbjct: 763 HRSATENKAQILENFYFPQMNSKINKIIKQCKICLENKYERHPSKLVLKATPVPNYPGHI 822 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 + +D + I VD+ +K A VK A + KL + +++ G+P Sbjct: 823 VHIDIYHTNNRV------ILTAVDKFSKYAQARIVK--SRATEDIKLPLQDLLTSFGIPE 874 Query: 2420 PIISDRCTKF-TSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFA 2596 I+ D +S L + + + +GQ ER L +++R E Sbjct: 875 KIVIDNEKSLNSSSIVFMLENQYSIEIFKTPPYTSSVNGQVERFHSTLTEIMRCTKAENT 934 Query: 2597 -GHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESL 2773 ++ L + YN+S S+ P E +GR S + ++ L Sbjct: 935 HNSFEELLNRSICKYNHSIHSTTKKKPIEIFFGRSVYSDPSLLE------------KDRL 982 Query: 2774 DKVKCI---QEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSP 2944 D +K I QEK L ++K+ V + + + +K++ G KL+P Sbjct: 983 DNIKKIVNKQEKDLTFHNKKRTEVK------AYSSNDIIYVKINKRIG-------NKLTP 1029 Query: 2945 RY 2950 RY Sbjct: 1030 RY 1031 >gb|AAC33318.1| (AF056940) pol polyprotein [Drosophila virilis] Length = 1188 Score = 280 bits (710), Expect = 5e-073 Identities = 155/459 (33%), Positives = 254/459 (54%), Gaps = 5/459 (1%) Frame = +3 Query: 582 PWGSPVLFVKKKDGSF-----RMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKI 746 P G PV+ V K++ +F R+ IDY+ N++ + +KYP+P +D + D+L F+ I Sbjct: 358 PNGLPVIIVPKRNDAFGKPKFRLVIDYRHFNELTINDKYPIPIMDEILDKLGKCQYFTTI 417 Query: 747 DFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFV 926 D + G+HQ+++ +PKTAF T++ HYE+ M FGL NAPA F MN +L+ + Sbjct: 418 DLAKGFHQIQMDPGSIPKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLIFKDC 477 Query: 927 ILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VM 1106 ++ +DDI+++S S +EH L+ V + LRE L + KCEF FLGH+++ + + Sbjct: 478 LVHLDDIIIFSTSLEEHILSLQKVFKKLREANLKLQLDKCEFMRKETEFLGHIITTEGIK 537 Query: 1107 VDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDE 1286 +P KI+ + + P ++SF+GL +YR+F+ F+++ LT K S ++ + Sbjct: 538 PNPNKIQAIVKFPIPKTPKEIKSFLGLCGFYRKFIPNFANIVKPLTLKLKGSKINIKDRD 597 Query: 1287 CEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHE 1466 E +F+KL L+T+ PIL P K F + DAS +GA L +E I YASR L HE Sbjct: 598 YELAFEKLKVLITSDPILIYPNFEKPFSLTTDASNMAIGAVLSQEHKPICYASRTLNEHE 657 Query: 1467 RNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKD 1646 NY T + EL A+V+A K ++ YL+G + ++ +DHR L ++ K N++ +RW L + Sbjct: 658 LNYSTIEKELLAIVWATKYFRSYLFGRQFQILSDHRPLVWLNNMKEPNMKLQRWKIKLNE 717 Query: 1647 YDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGG 1826 +D I Y P K N VADALSR + L +S R Q ++ +++ Sbjct: 718 FDFQIKYVPGKENYVADALSRIQLNENFLGEDTISTRATIHSAQEDNSNHLQITERPLNY 777 Query: 1827 FLAYVEERSSFLDKIKGKQFNDEKLIMFPYKELLGKANEAIIDE 1958 + +E ++ K + + I YK++ + +I E Sbjct: 778 YNRQIEFEKGTENETKVTNYFHKTNIKITYKDMTNTHAKELIKE 821 >emb|CAB57796.1| (X03431) ORF2 [Drosophila melanogaster] Length = 1059 Score = 278 bits (704), Expect = 2e-072 Identities = 153/426 (35%), Positives = 243/426 (56%), Gaps = 6/426 (1%) Frame = +3 Query: 477 PISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGS-----FRMCI 641 PI Y +A T ++G R S SP+ SP V KK + +R+ I Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265 Query: 642 DYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRY 821 DY++LN++ + ++YP+P++D + +L F+ ID + G+HQ+++ + KTAF T+ Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325 Query: 822 RHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVL 1001 HYE+L M FGL NAPA F MN IL+P L+ ++++DDI+++S S EH +++V Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385 Query: 1002 EMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFV 1181 L + L + KCEF +FLGH+V+ D + +P K++ + S+ PT +R+F+ Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFL 445 Query: 1182 GLASYYRRFVKGFSSVASQLTN-LTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEG 1358 GL YYR+F+ ++ +A +T+ L K++ E E+F+KL L+ PIL LP Sbjct: 446 GLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFE 505 Query: 1359 KNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYL 1538 K F++ DAS LGA L + + I++ SR L HE NY + EL A+V+A K ++HYL Sbjct: 506 KKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYL 565 Query: 1539 YGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAG 1718 G + + +DH+ L+++ K + RW L +Y I Y K N VADALSR Sbjct: 566 LGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRI-- 623 Query: 1719 SMESLAHSQVSR 1754 +E HS+ ++ Sbjct: 624 KIEENHHSEATQ 635 >emb|CAA08807.1| (AJ009736) Pol protein [Drosophila melanogaster] Length = 1150 Score = 277 bits (702), Expect = 4e-072 Identities = 154/398 (38%), Positives = 235/398 (58%), Gaps = 15/398 (3%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKK-DGS----FRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 +G R S SP+ SP+ V KK D S FR+ +DY+ LN++ V +K+P+P +D + D+L Sbjct: 306 QGIVRKSKSPYCSPIWVVPKKADASGKQKFRLVVDYRNLNEITVNDKFPIPRMDEILDKL 365 Query: 720 QGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGI 899 F+ ID + G+HQ+++ + KTAF T++ HYE+ M FGL NAPA F MN + Sbjct: 366 GRCQYFTTIDLAKGFHQIQMDENSIAKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNL 425 Query: 900 LKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG 1079 L+ + ++++DDI+VYS +EH L+ V E LR+ L + KCEF FLG Sbjct: 426 LEDLIYKDCLVYLDDIIVYSTPLEEHILSLKKVFEKLRDANLKLQLDKCEFMKKETEFLG 485 Query: 1080 HVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLT-NLTK 1256 H+V+ + + +P K + + ++ P ++SF+GL +YR+F+ F+ + +T L K Sbjct: 486 HIVTTNGIKPNPNKTKAITNFPLPKTPKQIKSFLGLCGFYRKFIPNFAKIVKPMTLKLKK 545 Query: 1257 QSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIA 1436 ++ E ESF+KL L+T+ PIL P K F + DAS +GA L + + Sbjct: 546 GAIIDTKCKEYIESFEKLKVLITSDPILIYPDFSKPFSLTTDASNVAIGAVLSQNHKPVC 605 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLR 1616 YASR L HE NY T + EL A+V+A K ++ YL+G EV +DH+ L ++ K N++ Sbjct: 606 YASRTLNEHEINYATIEKELLAIVWATKYFRSYLFGRPFEVLSDHKPLVWLNNIKEPNMK 665 Query: 1617 QRRWMELLKDYDITILYHPEKANVVADALSRK---------AGSMESLAHSQV 1748 +RW L ++D I Y P K N VADALSR A S ++ HS + Sbjct: 666 LQRWKIKLNEFDYKIKYLPGKENHVADALSRTKIEVMVGEVANSADATIHSAI 718 >dbj|BAA92704.1| (AB036886) reverse transcriptase [Tricholoma bakamatsutake] Length = 434 Score = 277 bits (700), Expect = 7e-072 Identities = 162/423 (38%), Positives = 239/423 (56%), Gaps = 9/423 (2%) Frame = +3 Query: 444 DFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDG 623 D I+++ G P Y ++ KG+ RPS SP SPV FV KKD Sbjct: 4 DHAIEMKLGFVPKKSKVYPLSLKEQEEVDAFLNEQLRKGYIRPSKSPQTSPVFFVPKKDH 63 Query: 624 SFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKT 803 RMC DY+ LN VKN +PLP I + D++ A F+K+D GY ++I+ D K Sbjct: 64 RKRMCTDYRYLNNWTVKNAHPLPLISEIIDKVGKAKVFTKLDLCWGYDNVRIKKGDGWKA 123 Query: 804 AFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDL-FVILFIDDILVYSKSNKEHE 980 AF R +E LVM FG+TN+P F ++MN I K +D VI+FIDDIL++ + + HE Sbjct: 124 AFAMRRGSFELLVMFFGMTNSPPTFQNMMNDIFKDVIDKGVVIIFIDDILIFMEDEENHE 183 Query: 981 *HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNV 1160 ++ VL+ L E L+ K KC F + FLG + D + +DP K++ + W PT + Sbjct: 184 AIVQEVLKRLAENDLFIKPEKCVFGASEIEFLGLKIGPDGIKMDPIKVQAIFDWPVPTRI 243 Query: 1161 T*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPIL 1340 T V++F+GLA++YR FV FS +A L NL ++ V W ++ + +F++L PIL Sbjct: 244 TEVQAFLGLANFYRCFVHNFSKIAVPLHNLMQKGVVWRWGEQQQTAFEELKRKFVEEPIL 303 Query: 1341 NLPVE-GKNFIVYCDASYWGLGAALM-----KEKNVIAYASRQLKVHERNYPTHDLELAA 1502 +PV+ + V DAS + GA L + + AY S+ L ERNY HD E+ Sbjct: 304 -VPVDFTRPLQVESDASDFATGAVLSMLCEDDKWHPCAYLSKGLNDVERNYDVHDKEMLG 362 Query: 1503 VVFALKQWKHYLYGV--KCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPE 1676 ++ AL+ W+HYL G + E++TDH++LQY + K LN RQ RW L +++ ++ Sbjct: 363 IIRALEAWRHYLEGCTHQIEIWTDHQNLQYFMSAKKLNHRQARWALFLLRFNLHSVHKAG 422 Query: 1677 KANVVADALSRK 1712 ADALSR+ Sbjct: 423 SLMRKADALSRR 434 >gb|AAD27902.1|AC006267_7 (AC006267) putative polyprotein [Arabidopsis thaliana] Length = 1054 Score = 268 bits (679), Expect = 2e-069 Identities = 141/348 (40%), Positives = 207/348 (58%) Frame = +3 Query: 642 DYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRY 821 D + +N + VK ++P+P +D+ D+L G+ FSKID SGYHQ +++ D KTA T+ Sbjct: 527 DCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQ 586 Query: 822 RHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVL 1001 R YE+LVM FGLTNAP FM LMN +L+ ++ +FVI++ DDILVYSK+ + H HL++VL Sbjct: 587 RLYEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVL 646 Query: 1002 EMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFV 1181 ++LR++KLYA KC F D + FLG VVS D + VD K++ ++ W P NV Sbjct: 647 DLLRKEKLYANLKKCTFCTDNLVFLGFVVSADGIKVDEEKVKAIREWPNPKNV------- 699 Query: 1182 GLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGK 1361 +++ + W D E +FQ L LT + + LP K Sbjct: 700 -----------------------SEKDIGFKWEDAQENAFQALKEKLTNSSVPILPNFMK 736 Query: 1362 NFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLY 1541 +F + CDAS G+GA LM++ IAY S +L NYPT+D EL A+V AL+ W+HYL+ Sbjct: 737 SFEIECDASGLGIGAVLMQDHKPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLW 796 Query: 1542 GVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKAN 1685 K ++TDH SL+++ Q+ LN R RW+E ++ + I Y +A+ Sbjct: 797 PKKFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKREAH 844 Score = 46.1 bits (107), Expect = 0.024 Identities = 41/118 (34%), Positives = 62/118 (51%), Gaps = 5/118 (4%) Frame = +2 Query: 2654 SSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVK----CIQEKHLAAQSR 2821 S+ +PFE +YG + SP++ P R SLD K Q +L A+++ Sbjct: 852 SATKFSPFEIVYGFKPTSPLDLIPL----PLSE---RSSLDGKKKDDLVQQVLNLEARTK 904 Query: 2822 K-KKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVLKRVGEVAYE 2998 + KKY + ++ F EG+QV + + + + KL PR GPFKVLKR+ AY+ Sbjct: 905 QYKKYANKGRKEVIFNEGDQVWVHLRKKRFPEV--RSSKLMPRIDGPFKVLKRINNNAYK 962 Query: 2999 LAL 3007 L L Sbjct: 963 LDL 965 >emb|CAB81146.1| (AL161510) putative polyprotein [Arabidopsis thaliana] Length = 1054 Score = 268 bits (679), Expect = 2e-069 Identities = 141/348 (40%), Positives = 207/348 (58%) Frame = +3 Query: 642 DYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRY 821 D + +N + VK ++P+P +D+ D+L G+ FSKID SGYHQ +++ D KTA T+ Sbjct: 527 DCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQ 586 Query: 822 RHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVL 1001 R YE+LVM FGLTNAP FM LMN +L+ ++ +FVI++ DDILVYSK+ + H HL++VL Sbjct: 587 RLYEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVL 646 Query: 1002 EMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFV 1181 ++LR++KLYA KC F D + FLG VVS D + VD K++ ++ W P NV Sbjct: 647 DLLRKEKLYANLKKCTFCTDNLVFLGFVVSADGIKVDEEKVKAIREWPNPKNV------- 699 Query: 1182 GLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGK 1361 +++ + W D E +FQ L LT + + LP K Sbjct: 700 -----------------------SEKDIGFKWEDAQENAFQALKEKLTNSSVPILPNFMK 736 Query: 1362 NFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLY 1541 +F + CDAS G+GA LM++ IAY S +L NYPT+D EL A+V AL+ W+HYL+ Sbjct: 737 SFEIECDASGLGIGAVLMQDHKPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLW 796 Query: 1542 GVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKAN 1685 K ++TDH SL+++ Q+ LN R RW+E ++ + I Y +A+ Sbjct: 797 PKKFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKREAH 844 Score = 46.1 bits (107), Expect = 0.024 Identities = 41/118 (34%), Positives = 62/118 (51%), Gaps = 5/118 (4%) Frame = +2 Query: 2654 SSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVK----CIQEKHLAAQSR 2821 S+ +PFE +YG + SP++ P R SLD K Q +L A+++ Sbjct: 852 SATKFSPFEIVYGFKPTSPLDLIPL----PLSE---RSSLDGKKKDDLVQQVLNLEARTK 904 Query: 2822 K-KKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVLKRVGEVAYE 2998 + KKY + ++ F EG+QV + + + + KL PR GPFKVLKR+ AY+ Sbjct: 905 QYKKYANKGRKEVIFNEGDQVWVHLRKKRFPEV--RSSKLMPRIDGPFKVLKRINNNAYK 962 Query: 2999 LAL 3007 L L Sbjct: 963 LDL 965 >gb|AAA50456.1| (U15406) gag, pol and env protein precursor [Caenorhabditis elegans] Length = 2272 Score = 268 bits (677), Expect = 3e-069 Identities = 167/501 (33%), Positives = 261/501 (51%), Gaps = 12/501 (2%) Frame = +3 Query: 378 IVREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSK 557 ++ +F DVF + + + I+L+ G PI + ++ Sbjct: 995 VIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQ 1054 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 R S SPW SPV+ VKKKDGS RMCIDY+++NKV N +PLP+I+ L G + Sbjct: 1055 KVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLY 1114 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLD 917 + D +G+ Q+ + TAF +E+ V+ FGL +PA F M I+ L Sbjct: 1115 TVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLG 1174 Query: 918 LFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD 1097 + +++DD+L+ SK ++H ++ L +R+ + + SKC V +LGH V+ D Sbjct: 1175 VCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLD 1234 Query: 1098 *VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVW 1277 V K + +K + RPTNV ++SF+GL YYR+F+ F+ +AS LT+L V +W Sbjct: 1235 GVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIW 1294 Query: 1278 SDECEESFQKLNTLLTTAPILNLP-VEG-----KNFIVYCDASYWGLGAALMKE-----K 1424 E E +FQ+L L+ P+L P VE + F++Y DAS G+GA L +E + Sbjct: 1295 EKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQ 1354 Query: 1425 NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKY 1604 + IA+AS+ L E Y DLE A++FAL+++K +YG V+TDH+ L + Sbjct: 1355 HPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSP 1414 Query: 1605 LNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSR-RPLAREVQT 1781 L R RW + ++D+ I+Y KAN VADALSR L Q + +QT Sbjct: 1415 LADRLWRWSIEILEFDVKIVYLAGKANAVADALSRGGCPPNELEEEQTKELTSIVNAIQT 1474 Query: 1782 LANDLMRLEVNEKGGFLAYVEERSSFLDKIKGK 1880 D++ + S +L+++KG+ Sbjct: 1475 ELPDIL---------------DSSCWLERLKGE 1492 Score = 58.6 bits (139), Expect = 4e-006 Identities = 76/307 (24%), Positives = 135/307 (43%), Gaps = 16/307 (5%) Frame = +2 Query: 2051 LSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGAL--QRMPIPK 2224 L+ H G KM+R + + F+W +M+ + V C C +H +L RM P Sbjct: 1563 LAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCAN-DHSKLTSSLTPYRMTFP- 1620 Query: 2225 FKWEKIAMDFV-VGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISE-VI 2398 E +A D + VG +Y I I+D TK +P+ AE K ++ I Sbjct: 1621 --LEIVACDLMDVGLSVQGNRY--ILTIIDLFTKYGTAVPIP-DKKAETVLKAFVERWAI 1675 Query: 2399 RLHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRA 2578 +PL +++D+ +F + + L ++ +G ER + + +++ Sbjct: 1676 GEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKK 1735 Query: 2579 CVVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWF--DAFEVRPWGT 2752 WD + A ++YNN + P ++GR P+E DA + Sbjct: 1736 -KTAVPMEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEMSGEDAVGINYADM 1794 Query: 2753 D----LLRESLDKVKCIQEKHLAAQSRK------KKYVVQKVRDFEFMEGEQVLLKVSPM 2902 D LL + L KV+ I ++H + +KY +K R + G +VLL++ Sbjct: 1795 DEYKHLLTQELLKVQKIAKEHAMREQESYKSLFDQKYASKKHRFPQ--PGSRVLLEIPSE 1852 Query: 2903 KGVMWFGKRGKLSPRYIGPFKVL 2971 K + KL ++ GP++V+ Sbjct: 1853 K---LGAQCPKLVNKWSGPYRVI 1872 >emb|CAA04050.1| (AJ000387) protease [Drosophila melanogaster] Length = 1217 Score = 267 bits (676), Expect = 5e-069 Identities = 163/502 (32%), Positives = 265/502 (52%), Gaps = 9/502 (1%) Frame = +3 Query: 375 SIVREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXS 554 ++ ++F D+F + I I T PI SY Sbjct: 283 TLCKQFRDIFYNPETPLTFTNKITHSIPTIDNT-PIHTKSYRYPFVHKTEVKKQIESMLD 341 Query: 555 KGFTRPSASPWGSPVLFVKKK-DGS----FRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 + R S SPW +PV V KK DG+ +R+ IDY++LN + ++YP+P+I+++ D + Sbjct: 342 QQIIRSSHSPWSAPVWVVPKKLDGTGNRKWRLVIDYRKLNDKTISDRYPIPNINDILDSI 401 Query: 720 QGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGI 899 A FS +D +SG+HQ+++ D+ KTAF HYEF M FGL NAPA F +M+ + Sbjct: 402 GKAKYFSTLDLTSGFHQIEMNPKDIAKTAFTVEGGHYEFTRMPFGLKNAPATFQRVMDSV 461 Query: 900 LKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG 1079 L + ++DDI+++S S ++H +++V E LR + SK EF + FLG Sbjct: 462 LGDLNGTICLFYLDDIIIFSPSLQKHLLDIKMVFEKLRAANFKLQPSKSEFLRKEIEFLG 521 Query: 1080 HVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQ 1259 H+V++D V +P KI +K + PTN ++SF+GL YYR+F++ F+ + +T K Sbjct: 522 HIVTQDGVKPNPNKISAIKKFPCPTNRRAIKSFLGLLGYYRKFIRDFARITKPMTKQLKG 581 Query: 1260 SVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAAL----MKEKN 1427 + ++F++ TLL+ PIL P K FI+ DAS + LGA L ++ Sbjct: 582 KRQVTTDKDFVDAFEQCKTLLSNDPILIHPDFEKPFILTTDASNFALGAVLSQGSLQNDR 641 Query: 1428 VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYL 1607 + +ASR L E NY T + E+ A+++A+K ++ Y+YGVK + TDH+ L ++ K Sbjct: 642 PVCFASRTLSDTEVNYSTIEKEMLAIIWAVKYFRPYIYGVKFTIVTDHKPLIWLMNFKEP 701 Query: 1608 NLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQTLA 1787 N + RW L +Y+ I++ NV+ADALSR ++ V P + + Sbjct: 702 NSKIIRWRLQLMEYNFEIIHKKGSQNVIADALSRADPNLNYNETLTVKPCPTSEKPINEF 761 Query: 1788 NDLMRLEVNEKGGFLAYVEERSSFLDKIKGK 1880 N + LE++ + + + F KI+ K Sbjct: 762 NTQLILEIDTNTSY----QTTTPFKQKIRKK 788 Score = 51.2 bits (120), Expect = 7e-004 Identities = 49/214 (22%), Positives = 90/214 (41%), Gaps = 7/214 (3%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S H G + + LK+ ++ MK I E + C C K+KY+ Q + P Sbjct: 868 SNHRGIDETFLHLKRETYFPNMKNKISELIRNCETCLKLKYDRQPQNIVFETPETPSKPL 927 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSA--HFIPVKVTYNAEK*AKLYISEVIRLH 2407 + I +D TI ++ I+D+ +K A + IP + N K K + S+ Sbjct: 928 DIIHIDIY-----TINNNFNL-TIIDKFSKFAAVYPIPNRNGINCIKAIKNFFSQ----F 977 Query: 2408 GVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVV 2587 G+P +I D+ +F + ++ + + + + ++ ER L ++ R + Sbjct: 978 GLPKKLIHDQGVEFCNDIFRKFCSQYNILLHVTSFQQSSSNSPVERLHSSLTEIYRIILD 1037 Query: 2588 EFAGH-----WDSFLPLAEFSYNNSYQSSIDMAPFEALYGR 2695 H + + +YNN+ S+ PFE GR Sbjct: 1038 TRKKHKLPTDHEEIMSETVITYNNAIHSTTKHTPFELFNGR 1078 >gb|AAF48015.1| (AE003485) CG2485 gene product [Drosophila melanogaster] Length = 1062 Score = 266 bits (672), Expect = 1e-068 Identities = 161/418 (38%), Positives = 240/418 (56%), Gaps = 24/418 (5%) Frame = +3 Query: 567 RPSASPWGSPVLFVKKK-DGS----FRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGAC 731 R S SPW +PV V KK D S +R+ +D++QLN +K++YP+P+I+ + D+L A Sbjct: 216 RHSHSPWSAPVFLVPKKLDASNKKKWRLVVDFRQLNDKTIKDRYPMPNINEILDKLGRAQ 275 Query: 732 TFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPY 911 FS +D +SGYHQ+++ D KTAF H+EF+ M FGL+NAPA F +M+ +L + Sbjct: 276 YFSALDLASGYHQIEVEPKDRSKTAFSAVGGHFEFIRMPFGLSNAPATFQRVMDNVLAEF 335 Query: 912 LDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 F ++++DDI+V+S S +EH HL + + L L + K EF + +LGH+V+ Sbjct: 336 NGKFCLIYLDDIIVFSTSLQEHINHLSSIFKKLTLANLKLQPDKSEFLKKELEYLGHIVT 395 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + V +P KIE +K++ P ++SF+GL YYRRF++ F+ + LT K Sbjct: 396 EKGVKPNPKKIETIKAFPMPKTRKEIKSFLGLLGYYRRFIRDFAKITKPLTQQLKGKSDV 455 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK----EKNVIAY 1439 D ++F+ TLL PIL P K+FI+ DAS +GA L + IAY Sbjct: 456 TIDDNYIKTFEFCKTLLCNDPILQYPDFTKSFILTTDASNVAIGAVLSQGTVGNDRPIAY 515 Query: 1440 ASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQ 1619 ASR L E +Y T EL A+V+A+K ++ YL+G K + TDH+ L ++ K N Sbjct: 516 ASRTLSESETHYATIKKELLAIVWAVKYFRPYLFGNKFLLVTDHKPLVWLKNLKEPNSML 575 Query: 1620 RRWMELLKDYDITILYHPEKANVVADALSR--------KAGSMESLAHSQVSRRPLAR-- 1769 RW L +YD ++Y NVVADALSR +A + S S RP+ Sbjct: 576 VRWKLQLLEYDCEVIYKKGSQNVVADALSRIVVELNTNEARPITSDTEILTSNRPINEFA 635 Query: 1770 -----EVQTLANDLMRLEVNEK 1820 ++ ANDL+ K Sbjct: 636 IQIILKIADCANDLLETPFKNK 657 Score = 57.8 bits (137), Expect = 7e-006 Identities = 65/299 (21%), Positives = 125/299 (41%), Gaps = 17/299 (5%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 + H G + +K+ ++ +K + + + +C CQ +KY+ Q Q P Sbjct: 741 NNHRGIDETVSHIKRQIYFPCLKERVSQLINKCDICQTLKYDRQPQKPIFQLTETPNKPL 800 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSA--HFIPVKVTYNAEK*AKLYISEVIRLH 2407 + + +D KT I I+D+ +K A + IP + + N K ++ + H Sbjct: 801 DIVHIDLYSINNKT------ILTIIDKFSKFAEGYTIPSRDSINITK----HMMFFFKTH 850 Query: 2408 GVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRAC-- 2581 G+P I+ D+ +F + +K L + + + + ++ ER L ++ R Sbjct: 851 GIPKTIVCDQGPEFAGIIFKELCNQYNITLHVTSFQQSSSNAPVERLHSSLTEIYRIIFE 910 Query: 2582 ---VVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGT 2752 ++ D L +YNN+ SS + P+E GR T Sbjct: 911 KKKALKLNLDHDCILTETFITYNNAIHSSTKLTPYEVFTGR------------------T 952 Query: 2753 DLLRESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVL-------LKVSPMKGV 2911 + ++ K Q+ +S K V+ +FE + ++L L ++ +G Sbjct: 953 HIFEQNY-KAVSQQDYMRELESYKNNLYVEVKEEFESQKLNKILKLNEDRVLPIAVQEGD 1011 Query: 2912 MWFGK---RGKLSPRY 2950 F K R KL+PR+ Sbjct: 1012 TVFRKENRRNKLTPRF 1027 >gb|AAA92249.1| (M32662) ORF B (bases 1850-5560) first start codon at 2306 [Autographa californica nucleopolyhedrovirus] Length = 1084 Score = 265 bits (669), Expect = 3e-068 Identities = 142/385 (36%), Positives = 227/385 (58%), Gaps = 9/385 (2%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKK-DGS----FRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 +G RPS S W SP+ V KK D S +R+ +D+++LN+ + +KYP+P+I ++ D+L Sbjct: 164 QGIIRPSDSAWSSPIWVVPKKIDASGKQKWRLVVDFRKLNEKTIDDKYPIPNISDVLDKL 223 Query: 720 QGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGI 899 F+ +D +SG++Q+++ D+ KTAF + H+EFL M GL N+P+ F +M+ + Sbjct: 224 GKCQYFTTLDLASGFYQVEMDPQDISKTAFNVEHGHFEFLRMPMGLKNSPSTFQRVMDNV 283 Query: 900 LKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG 1079 L+ + ++++DDI+VYS S +EH +L V + LRE + K EF ++LG Sbjct: 284 LRGLQNNICLVYLDDIIVYSTSLQEHLENLERVFQRLRESNFKIQMDKSEFLKLETAYLG 343 Query: 1080 HVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQ 1259 H++S+D + +P KI ++ + P ++ F+GL YYR+F+ F+ + LT K+ Sbjct: 344 HIISRDGIKPNPDKISAIQKYLIPKTPKEIKQFLGLLGYYRKFIPDFARLTKPLTQCLKK 403 Query: 1260 SVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK----EKN 1427 S E +F+ TLLT PIL P + F + DAS + +GA L + Sbjct: 404 GSKVTLSPEYVNAFEHCKTLLTNDPILQYPDFTREFNLTTDASNFAIGAVLSQGPIGSDK 463 Query: 1428 VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYL 1607 + YASR L E NY T + EL A+V+A K ++ YL+G K ++ TDH+ LQ++ K Sbjct: 464 PVCYASRTLNESELNYSTIEKELLAIVWATKYFRPYLFGRKFKILTDHKPLQWMMNLKDP 523 Query: 1608 NLRQRRWMELLKDYDITILYHPEKANVVADALSR 1709 N R RW L +YD +++Y K+N ADALSR Sbjct: 524 NSRMTRWRLRLSEYDFSVVYKKGKSNTNADALSR 557 Score = 59.3 bits (141), Expect = 2e-006 Identities = 74/301 (24%), Positives = 133/301 (43%), Gaps = 20/301 (6%) Frame = +2 Query: 2048 GLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKF 2227 G + H G + Y L + ++W RMK I +F+ +C C + KY+ +P Sbjct: 740 GKTNHRGINECYLALSKRYYWPRMKDQITKFINECTICGQAKYDRNPIRPQFNIVPPATK 799 Query: 2228 KWEKIAMD-FVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVI-- 2398 E + MD F V K I +D TK Y+ + I + + Sbjct: 800 PLETVHMDLFTVQNEKYI-------TFIDVFTKYGQ------AYHLRDGTAISILQALLR 846 Query: 2399 --RLHGVPLPIISDRCTKFTSMFWK---TLHEELGTRVDLCTEFHPHTDGQSERTIQVLE 2563 HG+P+ I++D T+F++ + +H+ + + P +G ER + Sbjct: 847 FCTHHGLPITIVTDNGTEFSNQLFSEFVRIHKIIHHKT---LPHSPSDNGNIERFHSTIL 903 Query: 2564 DMLRACVVEFAGHWD----SFLPLAEFSYNNSYQSSIDMAPFEALYGR-RCRSPIEWFDA 2728 + +R ++ H D + +P A YN+S S PF+ L G R P++ D Sbjct: 904 EHIRILKLQ---HKDEPIVNLMPYAIIGYNSSIHSFTKCRPFDLLNGHFDPRDPLD-IDL 959 Query: 2729 FE--VRPWGTDLLRESLDKVKCIQEKHLA-----AQSRKKKYVVQKVRDFEFMEGEQVLL 2887 E ++ + + ++ + I E LA +SR K + + E++ +QV + Sbjct: 960 TEHILQQYAQNHRQQMKQVYEIINETSLANRTALIESRNK----TRESEVEYIPQQQVFI 1015 Query: 2888 KVSPMKGVMWFGKRGKLSPRY 2950 K +P+ R K++PRY Sbjct: 1016 K-NPL------ASRQKVAPRY 1029 >emb|CAA86713.1| (Z46728) YI9910.15, incomplete TY3-2 orfB, len: >1099, CAI: 0.13 [Saccharomyces cerevisiae] Length = 1099 Score = 262 bits (662), Expect = 2e-067 Identities = 157/444 (35%), Positives = 241/444 (53%), Gaps = 8/444 (1%) Frame = +3 Query: 378 IVREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSK 557 I+R L P D+ +P DI+ ++PG R + Y + Sbjct: 316 IIRNDLPPRPADINNIPVKHDIE----IKPGARLPRLQPYHVTEKNEQEINKIVQKLLDN 371 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 F PS SP SPV+ V KKDG+FR+C+DY+ LNK + + +PLP IDNL ++ A F Sbjct: 372 KFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIF 431 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLD 917 + +D SGYHQ+ + D KTAF T YE+ VM FGL NAP+ F M + D Sbjct: 432 TTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYM---ADTFRD 488 Query: 918 L-FVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 L FV +++DDIL++S+S +EH HL VLE L+ + L K KC+F + FLG+ + Sbjct: 489 LRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGI 548 Query: 1095 D*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSV 1274 + +K ++ + P V + F+G+ +YYRRF+ S +A + S Sbjct: 549 QKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDK--SQ 606 Query: 1275 WSDECEESFQKLNTLLTTAPILNLPVEGK-NFIVYCDASYWGLGAALMKEKN------VI 1433 W+++ +++ +KL L +P+L +P K N+ + DAS G+GA L + N V+ Sbjct: 607 WTEKQDKAIEKLKAALCNSPVL-VPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVV 665 Query: 1434 AYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNL 1613 Y S+ L+ ++NYP +LEL ++ AL +++ L+G + TDH SL + + Sbjct: 666 GYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPAR 725 Query: 1614 RQRRWMELLKDYDITILYHPEKANVVADALSR 1709 R +RW++ L YD T+ Y NVVADA+SR Sbjct: 726 RVQRWLDDLATYDFTLEYLAGPKNVVADAISR 757 Score = 145 bits (363), Expect = 2e-032 Identities = 76/217 (35%), Positives = 115/217 (52%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G T + ++W +++ I++++ C CQ +K G LQ +PI + +W Sbjct: 861 HFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLD 920 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 I+MDFV G P T + I V+VDR +K AHFI + T +A + L + HG P Sbjct: 921 ISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPR 980 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I SDR + T+ ++ L + LG + + + HP TDGQSERTIQ L +LRA V Sbjct: 981 TITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQ 1040 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSP 2710 +W +LP EF YN++ ++ +PFE G +P Sbjct: 1041 NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTP 1077 >gb|AAA35184.1| (M23367) has homology to retroviral pol genes; ORF2 TYB3-2 (5' end of coding region not precisely determined) [Saccharomyces cerevisiae] Length = 1221 Score = 262 bits (662), Expect = 2e-067 Identities = 157/444 (35%), Positives = 241/444 (53%), Gaps = 8/444 (1%) Frame = +3 Query: 378 IVREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSK 557 I+R L P D+ +P DI+ ++PG R + Y + Sbjct: 316 IIRNDLPPRPADINNIPVKHDIE----IKPGARLPRLQPYHVTEKNEQEINKIVQKLLDN 371 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 F PS SP SPV+ V KKDG+FR+C+DY+ LNK + + +PLP IDNL ++ A F Sbjct: 372 KFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIF 431 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLD 917 + +D SGYHQ+ + D KTAF T YE+ VM FGL NAP+ F M + D Sbjct: 432 TTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYM---ADTFRD 488 Query: 918 L-FVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 L FV +++DDIL++S+S +EH HL VLE L+ + L K KC+F + FLG+ + Sbjct: 489 LRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGI 548 Query: 1095 D*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSV 1274 + +K ++ + P V + F+G+ +YYRRF+ S +A + S Sbjct: 549 QKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDK--SQ 606 Query: 1275 WSDECEESFQKLNTLLTTAPILNLPVEGK-NFIVYCDASYWGLGAALMKEKN------VI 1433 W+++ +++ +KL L +P+L +P K N+ + DAS G+GA L + N V+ Sbjct: 607 WTEKQDKAIEKLKAALCNSPVL-VPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVV 665 Query: 1434 AYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNL 1613 Y S+ L+ ++NYP +LEL ++ AL +++ L+G + TDH SL + + Sbjct: 666 GYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPAR 725 Query: 1614 RQRRWMELLKDYDITILYHPEKANVVADALSR 1709 R +RW++ L YD T+ Y NVVADA+SR Sbjct: 726 RVQRWLDDLATYDFTLEYLAGPKNVVADAISR 757 Score = 162 bits (405), Expect = 3e-037 Identities = 110/336 (32%), Positives = 168/336 (49%), Gaps = 6/336 (1%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G T + ++W +++ I++++ C CQ +K G LQ +PI + +W Sbjct: 861 HFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLD 920 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 I+MDFV G P T + I V+VDR +K AHFI + T +A + L + HG P Sbjct: 921 ISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPR 980 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I SDR + T+ ++ L + LG + + + HP TDGQSERTIQ L +LRA V Sbjct: 981 TITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQ 1040 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSP-IEWFDAFEVRPWGTDLLRESLD 2776 +W +LP EF YN++ ++ +PFE G +P I+ D R + L + L Sbjct: 1041 NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHL- 1099 Query: 2777 KVKCIQEKHLA--AQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRG---KLS 2941 K IQ K AQ + Q+ + G+ VL+ + K+G K+ Sbjct: 1100 KALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVHRDA------YFKKGAYMKVQ 1153 Query: 2942 PRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYH 3067 Y+GPF+V+K++ + AYEL L H V V LK+ + Sbjct: 1154 QIYVGPFRVVKKINDNAYELDL-NSHKKKHRVINVQFLKSLY 1194 >gb|AAA98435.1| (M34549) POL3 [Saccharomyces cerevisiae] Length = 1270 Score = 261 bits (659), Expect = 4e-067 Identities = 157/444 (35%), Positives = 240/444 (53%), Gaps = 8/444 (1%) Frame = +3 Query: 378 IVREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSK 557 I+R L P D+ +P DI+ ++PG R + Y + Sbjct: 290 IIRNDLPPRPADINNIPVKHDIE----IKPGARLPRLQPYHVTEKNEQEINKIVQKLLDN 345 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 F PS SP SPV+ V KKDG+FR+C+DY+ LNK + + +PLP IDNL ++ A F Sbjct: 346 KFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIF 405 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLD 917 + +D SGYHQ+ + D KTAF T YE+ VM FGL NAP+ F M + D Sbjct: 406 TTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYM---ADTFRD 462 Query: 918 L-FVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 L FV +++DDIL++S+S +EH HL VLE L+ + L K KC+F + FLG+ + Sbjct: 463 LRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGI 522 Query: 1095 D*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSV 1274 + +K ++ + P V + F+G+ +YYRRF+ S +A + S Sbjct: 523 QKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDK--SQ 580 Query: 1275 WSDECEESFQKLNTLLTTAPILNLPVEGK-NFIVYCDASYWGLGAALMKEKN------VI 1433 W+++ +++ KL L +P+L +P K N+ + DAS G+GA L + N V+ Sbjct: 581 WTEKQDKAIDKLKDALCNSPVL-VPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVV 639 Query: 1434 AYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNL 1613 Y S+ L+ ++NYP +LEL ++ AL +++ L+G + TDH SL + + Sbjct: 640 GYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPAR 699 Query: 1614 RQRRWMELLKDYDITILYHPEKANVVADALSR 1709 R +RW++ L YD T+ Y NVVADA+SR Sbjct: 700 RVQRWLDDLATYDFTLEYLAGPKNVVADAISR 731 Score = 160 bits (401), Expect = 8e-037 Identities = 109/335 (32%), Positives = 166/335 (49%), Gaps = 6/335 (1%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G T + ++W +++ I++++ C CQ +K G LQ +PI + +W Sbjct: 835 HFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLD 894 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 I+MDFV G P T + I V+VDR +K AHFI + T +A + L + HG P Sbjct: 895 ISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPR 954 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I SDR + T+ ++ L + LG + + + HP TDGQSERTIQ L +LRA Sbjct: 955 TITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQ 1014 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSP-IEWFDAFEVRPWGTDLLRESLD 2776 +W +LP EF YN++ ++ +PFE G +P I+ D R + L + L Sbjct: 1015 NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHL- 1073 Query: 2777 KVKCIQEKHLA--AQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRG---KLS 2941 K IQ K AQ + Q+ + G+ VL+ + K+G K+ Sbjct: 1074 KALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVHRDA------YFKKGAYMKVQ 1127 Query: 2942 PRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTY 3064 Y+GPF+V+K++ + AYEL L H V V LK + Sbjct: 1128 QIYVGPFRVVKKINDNAYELDL-NSHKKKHRVINVQFLKKF 1167 >emb|CAA97117.1| (Z72895) TY3B [Saccharomyces cerevisiae] Length = 1547 Score = 261 bits (659), Expect = 4e-067 Identities = 157/444 (35%), Positives = 240/444 (53%), Gaps = 8/444 (1%) Frame = +3 Query: 378 IVREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSK 557 I+R L P D+ +P DI+ ++PG R + Y + Sbjct: 567 IIRNDLPPRPADINNIPVKHDIE----IKPGARLPRLQPYHVTEKNEQEINKIVQKLLDN 622 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 F PS SP SPV+ V KKDG+FR+C+DY+ LNK + + +PLP IDNL ++ A F Sbjct: 623 KFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIF 682 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLD 917 + +D SGYHQ+ + D KTAF T YE+ VM FGL NAP+ F M + D Sbjct: 683 TTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYM---ADTFRD 739 Query: 918 L-FVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 L FV +++DDIL++S+S +EH HL VLE L+ + L K KC+F + FLG+ + Sbjct: 740 LRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGI 799 Query: 1095 D*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSV 1274 + +K ++ + P V + F+G+ +YYRRF+ S +A + S Sbjct: 800 QKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDK--SQ 857 Query: 1275 WSDECEESFQKLNTLLTTAPILNLPVEGK-NFIVYCDASYWGLGAALMKEKN------VI 1433 W+++ +++ KL L +P+L +P K N+ + DAS G+GA L + N V+ Sbjct: 858 WTEKQDKAIDKLKDALCNSPVL-VPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVV 916 Query: 1434 AYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNL 1613 Y S+ L+ ++NYP +LEL ++ AL +++ L+G + TDH SL + + Sbjct: 917 GYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPAR 976 Query: 1614 RQRRWMELLKDYDITILYHPEKANVVADALSR 1709 R +RW++ L YD T+ Y NVVADA+SR Sbjct: 977 RVQRWLDDLATYDFTLEYLAGPKNVVADAISR 1008 Score = 160 bits (401), Expect = 8e-037 Identities = 109/335 (32%), Positives = 166/335 (49%), Gaps = 6/335 (1%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G T + ++W +++ I++++ C CQ +K G LQ +PI + +W Sbjct: 1112 HFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLD 1171 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 I+MDFV G P T + I V+VDR +K AHFI + T +A + L + HG P Sbjct: 1172 ISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPR 1231 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I SDR + T+ ++ L + LG + + + HP TDGQSERTIQ L +LRA Sbjct: 1232 TITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQ 1291 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSP-IEWFDAFEVRPWGTDLLRESLD 2776 +W +LP EF YN++ ++ +PFE G +P I+ D R + L + L Sbjct: 1292 NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHL- 1350 Query: 2777 KVKCIQEKHLA--AQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRG---KLS 2941 K IQ K AQ + Q+ + G+ VL+ + K+G K+ Sbjct: 1351 KALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVHRDA------YFKKGAYMKVQ 1404 Query: 2942 PRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTY 3064 Y+GPF+V+K++ + AYEL L H V V LK + Sbjct: 1405 QIYVGPFRVVKKINDNAYELDL-NSHKKKHRVINVQFLKKF 1444 >emb|CAA97115.1| (Z72894) TY3B [Saccharomyces cerevisiae] Length = 1547 Score = 261 bits (659), Expect = 4e-067 Identities = 157/444 (35%), Positives = 240/444 (53%), Gaps = 8/444 (1%) Frame = +3 Query: 378 IVREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSK 557 I+R L P D+ +P DI+ ++PG R + Y + Sbjct: 567 IIRNDLPPRPADINNIPVKHDIE----IKPGARLPRLQPYHVTEKNEQEINKIVQKLLDN 622 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 F PS SP SPV+ V KKDG+FR+C+DY+ LNK + + +PLP IDNL ++ A F Sbjct: 623 KFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIF 682 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLD 917 + +D SGYHQ+ + D KTAF T YE+ VM FGL NAP+ F M + D Sbjct: 683 TTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYM---ADTFRD 739 Query: 918 L-FVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 L FV +++DDIL++S+S +EH HL VLE L+ + L K KC+F + FLG+ + Sbjct: 740 LRFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGI 799 Query: 1095 D*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSV 1274 + +K ++ + P V + F+G+ +YYRRF+ S +A + S Sbjct: 800 QKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPIQLFICDK--SQ 857 Query: 1275 WSDECEESFQKLNTLLTTAPILNLPVEGK-NFIVYCDASYWGLGAALMKEKN------VI 1433 W+++ +++ KL L +P+L +P K N+ + DAS G+GA L + N V+ Sbjct: 858 WTEKQDKAIDKLKDALCNSPVL-VPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVV 916 Query: 1434 AYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNL 1613 Y S+ L+ ++NYP +LEL ++ AL +++ L+G + TDH SL + + Sbjct: 917 GYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPAR 976 Query: 1614 RQRRWMELLKDYDITILYHPEKANVVADALSR 1709 R +RW++ L YD T+ Y NVVADA+SR Sbjct: 977 RVQRWLDDLATYDFTLEYLAGPKNVVADAISR 1008 Score = 160 bits (401), Expect = 8e-037 Identities = 109/335 (32%), Positives = 166/335 (49%), Gaps = 6/335 (1%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G T + ++W +++ I++++ C CQ +K G LQ +PI + +W Sbjct: 1112 HFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLD 1171 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 I+MDFV G P T + I V+VDR +K AHFI + T +A + L + HG P Sbjct: 1172 ISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPR 1231 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I SDR + T+ ++ L + LG + + + HP TDGQSERTIQ L +LRA Sbjct: 1232 TITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQ 1291 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSP-IEWFDAFEVRPWGTDLLRESLD 2776 +W +LP EF YN++ ++ +PFE G +P I+ D R + L + L Sbjct: 1292 NWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTPAIKSDDEVNARSFTAVELAKHL- 1350 Query: 2777 KVKCIQEKHLA--AQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRG---KLS 2941 K IQ K AQ + Q+ + G+ VL+ + K+G K+ Sbjct: 1351 KALTIQTKEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVHRDA------YFKKGAYMKVQ 1404 Query: 2942 PRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTY 3064 Y+GPF+V+K++ + AYEL L H V V LK + Sbjct: 1405 QIYVGPFRVVKKINDNAYELDL-NSHKKKHRVINVQFLKKF 1444 >gb|AAG13423.1|AC051634_4 (AC051634) putative plant disease resistance polyprotein; 64427-67186 [Oryza sativa] Length = 894 Score = 256 bits (648), Expect = 9e-066 Identities = 148/417 (35%), Positives = 229/417 (54%) Frame = +3 Query: 105 DLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYTSTPVHIIYFL 284 D+ ++ + D I GM WL + + C+ TL ++G + S + + Sbjct: 466 DMRVVTLGVHDAILGMDWLE-QWGEMSCHWANKTLK------FQYQGSWIS-----LQGV 513 Query: 285 RAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLDVFPTDLPGMPPDRDIDFCIDLE 464 + + S+ + H+I + Q ++ +F DVF D +PP R D I L Sbjct: 514 QDAAVPSEIAADDVQHVIPSSVQ-------QLLTDFDDVFH-DPKCLPPHRVFDHAIFLV 565 Query: 465 PGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCID 644 P P++ Y +P G PS SP+ SPVL VKKKDGS+R C+D Sbjct: 566 PDATPVNCRPYRYSPLQKDEIEKQVKEMIDAGLITPSMSPYASPVLLVKKKDGSWRFCVD 625 Query: 645 YKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYR 824 Y++LN + +K+K+P+P +D L D+L G FSK+D +GYHQ+++ TD KTAF T + Sbjct: 626 YRRLNALTIKSKFPMPVVDELLDELSGTKFFSKLDLKAGYHQIRMVETDEAKTAFKTHHG 685 Query: 825 HYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLE 1004 ++F VM FGLTNAP+ F LMN + P++ FV++F+D+ILVYS H HL+ V Sbjct: 686 QFQFRVMPFGLTNAPSTFQCLMNSVFAPFIRKFVLVFMDNILVYSPDLDSHLHHLQQVFV 745 Query: 1005 MLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVG 1184 +LR+ +L+AK SKC F + +LG+++S V DP K + +W PT+VT +R F+G Sbjct: 746 ILRQHQLFAKRSKCTFACTQLEYLGYIISDKGVSTDPEKTAAMLAWPVPTSVTELRGFLG 805 Query: 1185 LASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVE 1355 L YYR+FV+G+S +A L L K+ +W+D C QK +++ + +PV+ Sbjct: 806 LTGYYRKFVQGYSIIARPLILLLKKKA-FLWTD-CHA--QKFPNRISSRMCIKIPVQ 858 >gb|AAA21442.1| (M77661) putative pol polyprotein [Pyricularia grisea] Length = 1398 Score = 254 bits (642), Expect = 4e-065 Identities = 177/526 (33%), Positives = 278/526 (52%), Gaps = 36/526 (6%) Frame = +3 Query: 135 DVIFGMTWLSPNFAILDCNAKTVTLA--------KPGTYPLVWEGDYTSTPVHIIYFLRA 290 DVI G+ W++ LD K + + + T P+ + V + RA Sbjct: 221 DVILGLPWMTHRRISLDAARKKLVVGAARGMLVDESSTRPVSTKPTVVIGNVFLAACRRA 280 Query: 291 KKMVSKGCLAFLAHLIDDTTQI-----------PSIESVSIVREFLDVFP-TDLPGMPPD 434 K+ + + F + + + T I P + +F D+F T G+PP Sbjct: 281 KRHDGEQ-MEFASTSLREMTSILQLTATYEQALPQATLPPELAKFADLFDKTKASGLPPH 339 Query: 435 RD-IDFCIDL---EPGTRPISIP---SYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGS 593 R +D I L E G P ++P Y M KG+ R S+S + Sbjct: 340 RGHLDHHIRLQKDESGKTP-ALPWGRLYHMPREQLLELRRQIVDMMDKGWIRASSSSAAA 398 Query: 594 PVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQL 773 PVL V+K G +R+C+DY+ LN + ++++YPLP I L GA F+K+D + +H+L Sbjct: 399 PVLMVRKASGGWRLCVDYRALNSITMQDRYPLPLIKETIRSLTGARWFTKVDVRAAFHKL 458 Query: 774 KIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILV 953 +I D TAF TR+ +E+LV FGL APA F +NG+L L + ++DDIL+ Sbjct: 459 RIAEGDEHLTAFRTRFGLFEWLVCPFGLAGAPATFQRYVNGVLGDTLGDYASAYLDDILI 518 Query: 954 YSKSNK-EHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVV-SKD*VMVDPYKIE 1127 YS +K +H + VL+ L L K F + V +LG +V + + V DP KI+ Sbjct: 519 YSSGSKSDHWSKVTRVLDKLAAAGLNLDLDKSAFAVKEVKYLGFIVKAGEGVQADPEKIK 578 Query: 1128 VVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQK 1307 ++ WE PT + +R F+G A++YR F+ G+S++ + L LTK+ P W++E E +F+ Sbjct: 579 AIRDWEAPTRLRGLRGFLGFANFYRDFIDGYSTLTAPLLALTKKGTPFRWTEELEGAFEA 638 Query: 1308 LNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK-----NVIAYASRQLKVHERN 1472 L APIL + K+ + D S LG L ++ +A+ S +L +RN Sbjct: 639 LKHAFLQAPILAQWDDAKDTRMETDCSGAALGGCLSQKGTDGLWRPVAFHSAKLTDAQRN 698 Query: 1473 YPTHDLELAAVVFALKQWKHYLYGVKCE--VYTDHRSLQYVFTQKYLNLRQRRWMELLKD 1646 Y HD EL AV+ LK W L V+ + TDH++L+Y + ++ RQ RW E L Sbjct: 699 YTIHDKELLAVIACLKAWDAELRSVRRPFLILTDHKALEYFSKPREVSERQMRWAETLSK 758 Query: 1647 YDITILYHPEKANVVADALSRK 1712 ++ + + P + V DALSR+ Sbjct: 759 FNYNLRFRPGRLAGVPDALSRR 780 Score = 110 bits (272), Expect = 1e-021 Identities = 93/338 (27%), Positives = 148/338 (43%), Gaps = 9/338 (2%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G + L + + W M + FV C C++ K + G LQ +PIP W++ Sbjct: 908 HSGRDGTFAILARDYHWDGMAEHVRRFVRNCDICRRTKPSRRARQGLLQPLPIPDRFWKQ 967 Query: 2240 IAMDFVVGFP---KTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHG 2410 I++DF+ P + +Y + VI DRL+K + + AE A ++S R G Sbjct: 968 ISIDFMTDLPGNGEVTPRY--LMVITDRLSKYVQ-LEAMHSMKAEDCAARFLSSWWRFRG 1024 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 P IISDR + + FW L + G L T +HP TDG +ER Q ++ LRA + Sbjct: 1025 FPSQIISDRGSDWVGGFWTELCRQTGVEQLLSTSYHPETDGGTERANQEVQQYLRAYIAF 1084 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCR-----SPIEWFDAFEVRPWGTD 2755 G W L A+ + NN S +P + L G +P A + T Sbjct: 1085 DQGDWPDHLGAAQLALNNRNSSVTGTSPNKLLLGFDIEAVPNAAPPSKAPASSPKARATR 1144 Query: 2756 LLRESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFE-FMEGEQVLLKVSPMKGVMWFGKRG 2932 L + + Q Q R++ + R E F G++V L ++ + Sbjct: 1145 FLEHLREGSELAQAAIAYNQQRQEAGANESRRPAERFRVGDEVFLN---LRNIRTNRPCR 1201 Query: 2933 KLSPRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGD 3073 KL Y G ++V+ + L +P G+HP F+V +++ D Sbjct: 1202 KLDYIY-GKYRVVAVPTPLTVTLDVP---RGIHPTFHVELVERAASD 1244 >gb|AAB50148.1| (U89994) reverse transcriptase polyprotein [Drosophila melanogaster] Length = 1041 Score = 253 bits (640), Expect = 8e-065 Identities = 173/556 (31%), Positives = 283/556 (50%), Gaps = 31/556 (5%) Frame = +3 Query: 48 CEKVYRSCLVTFVGSNTHIDLVIL-EMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGT 224 C V + C + NT + IL + FD I G+ L A LD KT+ + Sbjct: 67 CNTVKQKCFIKLF--NTSVQFFILPSLSSFDAIIGLDLLKQGNATLDFKNKTLNI----- 119 Query: 225 YPLVWEGDYTSTPVHIIYFLRAKKMVSKGCLAFLAHLIDDTTQIPSIESV---------- 374 + V I FLR D+ +IE++ Sbjct: 120 ----------NNEVESIQFLRC-----------------DSVNFANIENIVVPNQISNKF 152 Query: 375 -SIVREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXX 551 +++R L VF +P + +I I E +PI Y Sbjct: 153 HTMLRNRLAVFAEPEEALPYNTNIVATIRTEDD-QPIYSKLYPYPMGVSDFVNKETHALL 211 Query: 552 SKGFTRPSASPWGSPVLFVKKK------DGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFD 713 G RPS+SP+ +PV V KK + R+ ID+++LN + +KYP+P++ + Sbjct: 212 KDGIIRPSSSPYNNPVWVVDKKGTDEEGNTKKRLVIDFRKLNLKTIDDKYPIPNVVWILS 271 Query: 714 QLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMN 893 L A F+ +D S +HQ+ + D KTAF YEF + FGL NAP+ F ++ Sbjct: 272 NLGKARFFTTLDLKSAFHQILLAEKDRAKTAFSVGNGKYEFCRLPFGLKNAPSIFQRAID 331 Query: 894 GILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSF 1073 +++ + +++DD++++S ++H + VL+ L + K F+ + V + Sbjct: 332 DVVRDRIGKSCYVYVDDVIIFSNGIEDHVNDVAWVLDRLSGANMRVSKEKSFFFKESVEY 391 Query: 1074 LGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLT 1253 LG +VS + P K+E ++ + +PTN+ VRSF+GLASYYR F+K F+S+A LT++ Sbjct: 392 LGFMVSSGGITTSPSKVEAIQKYNQPTNLFSVRSFLGLASYYRCFIKDFASIARPLTDIL 451 Query: 1254 K-----------QSVPSVWSDECEESFQKLNTLLTTAPILNL-PVEGKNFIVYCDASYWG 1397 K + +P + + +F+KL +L + ++ L P K F + DAS +G Sbjct: 452 KGENGKVSASQSKKIPISFDERQCSAFEKLKNVLVSENVMLLYPDYRKAFDLTTDASAFG 511 Query: 1398 LGAALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVK-CEVYTDHR 1574 LGA L ++ + SR L+ E N+ T++ EL A+V+ALK ++YLYGVK ++TDH+ Sbjct: 512 LGAVLSQDGKPVTMISRTLQDRELNFATNERELLAIVWALKSLRNYLYGVKNLNIFTDHQ 571 Query: 1575 SLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKA 1715 L Y + + N + +RW + +++ I Y P K VADALSR+A Sbjct: 572 PLTYAVSDRNPNAKIKRWKAFIDEHNAKIFYKPGKETYVADALSRQA 618 Score = 48.4 bits (113), Expect = 0.005 Identities = 68/297 (22%), Positives = 120/297 (39%), Gaps = 3/297 (1%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H A + + + Q++++ +M + FV+ C CQK KY+ L R PIP E Sbjct: 756 HRAAQENVKQILQYYFFPKMSQIAATFVSNCLVCQKAKYDRHPQKQILGRTPIPSHVGET 815 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 + +D + G+ + +D+ +K A P+ + + I +++ Sbjct: 816 LHIDIF-----STGR-NYFLTCIDKFSKFAIVQPIGSRTITD--LEPAIMQLMNFFPHSK 867 Query: 2420 PIISDRCTKFTSMFWKT-LHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFA 2596 I D S K+ L + H ++GQ ER L ++ R C+ + Sbjct: 868 TIFCDNEPSINSESIKSLLKNRFNVDIANAPPLHSTSNGQVERFHSTLLEIAR-CLKLDS 926 Query: 2597 GHWD--SFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRES 2770 G D + + A YN + S + P + ++ +P E L E Sbjct: 927 GMNDTVNLILQATIEYNKTVHSVTNRRPIDIIHS----TPPE-------------LANEI 969 Query: 2771 LDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRY 2950 ++ V QEK L +++ V ++ R FE GE V++K + G KL+PRY Sbjct: 970 VEMVNEAQEKQL-----RRENVTRRDRTFEV--GETVMVKQNNRLG-------NKLTPRY 1015 >dbj|BAA77816.1| (AB027513) polyprotein [Tricholoma matsutake] Length = 523 Score = 253 bits (640), Expect = 8e-065 Identities = 145/380 (38%), Positives = 220/380 (57%), Gaps = 8/380 (2%) Frame = +3 Query: 381 VREFLDVFPTD-LPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSK 557 + EF DVF + +P + D I+L PG P S Y ++P + Sbjct: 112 LHEFEDVFSKESFDSLPARKPWDHTIELTPGATPSSCKVYPLSPEEQWQLDQFIDEHLAS 171 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 G +PS SP SP FVK KDGS ++ DY++LN + VKN YPLP I L +QL GA F Sbjct: 172 GCIQPSKSPMASPFFFVKNKDGSLQLVQDYRRLNNITVKNCYPLPLISKLINQLHGAQYF 231 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKP-YL 914 +K+D GY+ ++I+ D K AF T +E LVM FGLTN+PA F ++MN I L Sbjct: 232 TKLDVHWGYNNVRIKEGDEWKAAFRTNRGLFEPLVMFFGLTNSPATFQTMMNNIFHDLIL 291 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 + V +++DDIL++++ +EH +R++LE LR KLY + KCEF + +LG ++S+ Sbjct: 292 EGIVCIYLDDILIFTRMVEEHHRIMRLILERLRWYKLYLRQDKCEFERTKIEYLGLIISE 351 Query: 1095 D*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSV 1274 V ++P K+ V +W PTN V+SF+G ++YR F+K FS A L +LT + Sbjct: 352 GQVEMNPIKVNGVTAWLTPTNKKEVQSFLGFINFYRCFIKDFSHHARPLFDLTGKEAWR- 410 Query: 1275 WSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK------NVIA 1436 W + +E+F+KL ++T+APIL + + F V D+S + +GA L ++ + + Sbjct: 411 WDNAQQEAFEKLKEMVTSAPILTFADDLRPFRVEADSSDFAMGAVLSQQSLEDQKWHPVV 470 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALK 1520 + S+ L ERNY HD E+ A+ L+ Sbjct: 471 FYSKSLSAVERNYEIHDKEMLAISMHLR 498 >emb|CAB39733.1| (AJ133521) protease, reverse transcriptase, ribonuclease H, integrase [Drosophila buzzatii] Length = 1147 Score = 251 bits (635), Expect = 3e-064 Identities = 148/444 (33%), Positives = 242/444 (54%), Gaps = 9/444 (2%) Frame = +3 Query: 471 TRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVK-KKDGSFRMCIDY 647 TRPI + P KG PS SP + +K+G +R+C+D+ Sbjct: 292 TRPIKQRYFPKNPKMQAEINKQVDELLVKGCIEPSKSPHTRTYSNGQGRKNGKWRLCVDF 351 Query: 648 KQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRH 827 +QLN ++K+ YPLP + ++ DQL+ A + +D GY Q+ + + P TAF + Sbjct: 352 RQLNSRSIKDAYPLPRVHHILDQLREARYITSLDLKDGYWQIPMEKSSRPLTAFTVPGKG 411 Query: 828 -YEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLE 1004 +++ VM FGL +APA F ++ ++ P + ++DDI+V ++ +EH +LR V Sbjct: 412 LFQWKVMPFGLHSAPATFQRALDQVIGPDMMPHAFAYLDDIIVIGRTRQEHMDNLREVFR 471 Query: 1005 MLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVG 1184 LR L KC+F+ + +LGH V+++ + DP K+ + + PTNV +R +VG Sbjct: 472 RLRAANLRINIDKCDFFKKELKYLGHKVTENGIRTDPEKVAAIAQLKPPTNVKELRQYVG 531 Query: 1185 LASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKN 1364 +AS+YRR+V F+S L L K+ V W++E + +F+ + LT +P+L P K Sbjct: 532 VASWYRRYVPDFASTVHPLNALLKKGVKWEWTEEHQRAFETVKAKLTESPVLACPDFSKP 591 Query: 1365 FIVYCDASYWGLGAALMKE----KNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKH 1532 F + DAS +GLGA L + + VI+YASR L ERNY + E A+++ +++ + Sbjct: 592 FCLQTDASNYGLGAILTQTSEEGERVISYASRTLNSAERNYSATEKECLAIIWGIRKLRP 651 Query: 1533 YLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRK 1712 YL G V TDH +L+++ + + + R RW L+ YD + Y K NVVADALSR+ Sbjct: 652 YLEGYHFIVITDHMALKWLNSIESPSGRIARWALELQQYDFEVRYRKGKQNVVADALSRQ 711 Query: 1713 AGSMESLAHSQVSRRP---LAREVQTLANDLMR 1802 ++ ++ P R +Q L D+ + Sbjct: 712 PLEEDACCLAKSRETPDGTACRWLQRLRQDMRK 744 Score = 91.7 bits (224), Expect = 5e-016 Identities = 61/223 (27%), Positives = 101/223 (44%), Gaps = 4/223 (1%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G+ K + ++W M RD+ +V +C CQ+ K G + +P+ W Sbjct: 799 HLGSRKTIARVAARYYWPGMYRDVRNYVQRCEVCQRYKPSQLQAAGQMLTQ-VPEEPWAT 857 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 + DFV P++ + V +DR +K +P++ + N K + ++ G P Sbjct: 858 VCADFVGPLPRSKHGNTMLLVFIDRFSKWTEMVPLR-SANTAALQKAFRERILARFGAPK 916 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 +I+D T+FTS +K +ELG R L + P + +ER + ++ M + +FAG Sbjct: 917 VLITDNGTQFTSRAFKNFLDELGVRHQLTAPYTPQ-ENPTERANRTVKTM----IAQFAG 971 Query: 2600 H----WDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDA 2728 WD LP + N+S +S GR R P FDA Sbjct: 972 SDQRCWDEALPELTLAVNSSVSASTGYTAAFITQGREPRLPKTMFDA 1018 >emb|CAA65152.1| (X95908) orf [Drosophila melanogaster] Length = 1494 Score = 250 bits (633), Expect = 5e-064 Identities = 145/431 (33%), Positives = 238/431 (54%), Gaps = 7/431 (1%) Frame = +3 Query: 417 PGMPPDR-DIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGS 593 P P R +I C+ +P S ++ T GF RPS S + S Sbjct: 698 PNEPTVRSEIQLCLK---NPKPFSCSPRRLSYTEKDRLQKLLDEYLENGFIRPSDSEYAS 754 Query: 594 PVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQL 773 P++ VKKK G RMC+D+++LNK+ +K+ YPLP ID+L D++ F+K+D +G+ + Sbjct: 755 PIVLVKKKTGDLRMCVDFRKLNKMTMKDNYPLPLIDDLLDRMNEKTVFTKLDLKNGFFHV 814 Query: 774 KIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL-DLFVILFIDDIL 950 ++ + T+F T YE+L M FGL NAP+ F +N I + + V++++DDIL Sbjct: 815 HVKKESIKYTSFVTPLGQYEWLRMPFGLKNAPSVFQRFVNKIFADMIRENKVVVYMDDIL 874 Query: 951 VYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEV 1130 + +++ EH L+ + + L E KL + KCEF + +LG +++KD +M + IE Sbjct: 875 LATENINEHLETLKEIFKRLVENKLELRIDKCEFMQSSIKYLGFIINKDGIMPNDKGIEA 934 Query: 1131 VKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKL 1310 +K++ P NV V+SF+GL SY+RRF+K FS +A L ++ K+ P + E F L Sbjct: 935 IKNFPIPNNVHTVQSFLGLCSYFRRFIKDFSRLAKPLHDILKKDKPFKFGSEEMICFNML 994 Query: 1311 NTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK-----NVIAYASRQLKVHERNY 1475 L +P+L + ++CDAS G GA LM++K + +++ S++ E Y Sbjct: 995 KDKLIQSPVLAIYNHKHETELHCDASSSGFGAVLMQKKEDQKWHPVSFFSKRTTDIESKY 1054 Query: 1476 PTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDI 1655 + +LE A+V++L++++ YL+ ++ TD SL ++K LN R RW + YD Sbjct: 1055 HSFELETLAIVYSLRRFRVYLHWRTFKIVTDCNSLILTLSKKELNPRIARWALEFQGYDF 1114 Query: 1656 TILYHPEKANVVADALSR 1709 I++ DALSR Sbjct: 1115 EIVHRAGSRMQHVDALSR 1132 Score = 71.0 bits (171), Expect = 7e-010 Identities = 72/278 (25%), Positives = 113/278 (39%), Gaps = 3/278 (1%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G KM + +++W+ +K+ ++ C C + G L +P +E Sbjct: 1211 HVGRDKMIEAIMKNYWFPNLKQKCSTHISNCLKCISFSPKTGKTEGFLHNIPKGNKPFEI 1270 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 I +D G I VIVD TK K T E L ++ R + P Sbjct: 1271 IHIDHY-GPVDLARPKKHILVIVDAFTKFVRLYATKTTNTKEVIQSL--NDYFRAYSRPK 1327 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 IISDR FTS + + +E + P +GQ ER + L M+ + G Sbjct: 1328 CIISDRGACFTSGDFDSFLKECNVKHIKIATGSPQANGQVERINRSLGPMISKLIEPDQG 1387 Query: 2600 -HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLD 2776 HWD L E++ NN+ SI P L+G + + I ++ G + L+ Sbjct: 1388 LHWDLVLEKVEYTLNNTLHRSIKQYPSIMLFGLQQKGQIMDELKEKIEEIGETIEERDLE 1447 Query: 2777 KVKCIQE-KHLAAQSRKKKYVVQK-VRDFEFMEGEQVLLKV 2893 ++ E AQ+ K+YV +K R F +G LK+ Sbjct: 1448 SIRNKGEASQKIAQAYNKEYVDKKRKRSGVFTKGTTSWLKI 1488 >emb|CAA27371.1| (X03734) reverse transcriptase-like enzyme (930 aa) [Drosophila melanogaster] Length = 930 Score = 249 bits (629), Expect = 1e-063 Identities = 137/385 (35%), Positives = 227/385 (58%), Gaps = 19/385 (4%) Frame = +3 Query: 558 GFTRPSASPWGSPVLFVKKK------DGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 G RPS SP+ SP V KK + + R+ ID+++LN+ + ++YP+P I + L Sbjct: 188 GIIRPSRSPYNSPTWVVDKKGTDASGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANL 247 Query: 720 QGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGI 899 A F+ +D SGYHQ+ + D KT+F YEF + FGL NA + F ++ + Sbjct: 248 GKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDV 307 Query: 900 LKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG 1079 L+ + +++DD++++S++ +H H+ VL+ L + + K F+ + V +LG Sbjct: 308 LREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLG 367 Query: 1080 HVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTK- 1256 +VSKD DP K++ ++ + P V VRSF+GLASYYR F+K F+++A +T++ K Sbjct: 368 FIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKG 427 Query: 1257 ----------QSVPSVWSDECEESFQKLNTLLTTAP-ILNLPVEGKNFIVYCDASYWGLG 1403 + +P +++ +FQ+L +L + IL PV K F + DAS G+G Sbjct: 428 ENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPVFKKPFDLTTDASASGIG 487 Query: 1404 AALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVK-CEVYTDHRSL 1580 A L +E I SR LK E+NY T++ EL A+V+AL + +++LYG + ++TDH+ L Sbjct: 488 AVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPL 547 Query: 1581 QYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRK 1712 + + N + +RW + ++ + Y P K N VADALSR+ Sbjct: 548 TFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQ 591 >gb|AAA28600.1| (M38438) reverse transcriptase endonuclease [Drosophila virilis] Length = 1009 Score = 248 bits (627), Expect = 3e-063 Identities = 136/385 (35%), Positives = 230/385 (59%), Gaps = 19/385 (4%) Frame = +3 Query: 558 GFTRPSASPWGSPVLFVKKK------DGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 G RPS SP+ SP V KK + R+ ID+++LN+ + ++YP+P I + L Sbjct: 182 GIIRPSRSPYNSPTWVVDKKGTDSYGNPKKRLVIDFRKLNEKTIPDRYPMPRIPMILANL 241 Query: 720 QGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGI 899 A F+ +D SGYHQ+ + D KT+F YEF + FGL NA + F ++ I Sbjct: 242 GKAKYFTTLDLKSGYHQIYLAEHDREKTSFSVSSGKYEFCRLPFGLRNASSIFQRAIDDI 301 Query: 900 LKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG 1079 L+ ++ +++DD++++SK+ EH H+ IVL+ L + + K F+ + + FLG Sbjct: 302 LREHIGKICFVYVDDVIIFSKNETEHLQHINIVLKCLIDANMRVGPEKTRFFKESIEFLG 361 Query: 1080 HVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTK- 1256 +V+KD DP K++ ++ + P NV VRSF+GLA+YYR F+K F+++A ++++ K Sbjct: 362 FIVTKDGATSDPKKVKAIQEFPEPKNVYSVRSFLGLANYYRVFIKDFAAIARPISDILKG 421 Query: 1257 ----------QSVPSVWSDECEESFQKLNTLLTTAPI-LNLPVEGKNFIVYCDASYWGLG 1403 + +P +++ ++F +L ++L + + L P K F + DAS G+G Sbjct: 422 ENGSVSRHVSKKIPVEFNEVQRDAFHRLRSILASEDVMLMYPNFQKPFDLTTDASASGIG 481 Query: 1404 AALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVK-CEVYTDHRSL 1580 A L + I SR LK E+NY T++ EL A+V+AL + +++LYG + ++TDH+ L Sbjct: 482 AVLSQGNRPITMISRALKQAEQNYATNERELLAIVWALGRLQNFLYGSREINIFTDHQPL 541 Query: 1581 QYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRK 1712 + + K N + +RW + ++ + Y P K N+VADALSR+ Sbjct: 542 TFAVSDKNTNSKIKRWKSYIDQHNAKMFYKPGKENLVADALSRQ 585 >gb|AAA70219.1| (M12927) unknown protein [Drosophila melanogaster] Length = 1010 Score = 246 bits (622), Expect = 1e-062 Identities = 136/385 (35%), Positives = 226/385 (58%), Gaps = 19/385 (4%) Frame = +3 Query: 558 GFTRPSASPWGSPVLFVKKK------DGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 G RPS SP+ SP V KK + + R+ ID+++LN+ + ++YP+P I + L Sbjct: 183 GIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANL 242 Query: 720 QGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGI 899 A F+ +D SGYHQ+ + D KT+F YEF + FGL NA + F ++ + Sbjct: 243 GKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDV 302 Query: 900 LKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG 1079 L+ + +++DD++++S++ +H H+ VL+ L + + K F+ + V +LG Sbjct: 303 LREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLG 362 Query: 1080 HVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTK- 1256 +VSKD DP K++ ++ + P V VRSF+GLASYYR F+K F+++A +T++ K Sbjct: 363 FIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKG 422 Query: 1257 ----------QSVPSVWSDECEESFQKLNTLLTTAP-ILNLPVEGKNFIVYCDASYWGLG 1403 + +P +++ +FQ+L +L + IL P K F + DAS G+G Sbjct: 423 ENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIG 482 Query: 1404 AALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVK-CEVYTDHRSL 1580 A L +E I SR LK E+NY T++ EL A+V+AL + +++LYG + ++TDH+ L Sbjct: 483 AVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPL 542 Query: 1581 QYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRK 1712 + + N + +RW + ++ + Y P K N VADALSR+ Sbjct: 543 TFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQ 586 >gb|AAC82604.1| (AF033821) Prgag-pol [Drosophila melanogaster] Length = 1463 Score = 246 bits (622), Expect = 1e-062 Identities = 136/385 (35%), Positives = 226/385 (58%), Gaps = 19/385 (4%) Frame = +3 Query: 558 GFTRPSASPWGSPVLFVKKK------DGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 G RPS SP+ SP V KK + + R+ ID+++LN+ + ++YP+P I + L Sbjct: 636 GIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANL 695 Query: 720 QGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGI 899 A F+ +D SGYHQ+ + D KT+F YEF + FGL NA + F ++ + Sbjct: 696 GKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDV 755 Query: 900 LKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG 1079 L+ + +++DD++++S++ +H H+ VL+ L + + K F+ + V +LG Sbjct: 756 LREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLG 815 Query: 1080 HVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTK- 1256 +VSKD DP K++ ++ + P V VRSF+GLASYYR F+K F+++A +T++ K Sbjct: 816 FIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKG 875 Query: 1257 ----------QSVPSVWSDECEESFQKLNTLLTTAP-ILNLPVEGKNFIVYCDASYWGLG 1403 + +P +++ +FQ+L +L + IL P K F + DAS G+G Sbjct: 876 ENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIG 935 Query: 1404 AALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVK-CEVYTDHRSL 1580 A L +E I SR LK E+NY T++ EL A+V+AL + +++LYG + ++TDH+ L Sbjct: 936 AVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPL 995 Query: 1581 QYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRK 1712 + + N + +RW + ++ + Y P K N VADALSR+ Sbjct: 996 TFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQ 1039 >emb|CAA51084.1| (X72390) ORF2 [Drosophila subobscura] Length = 1009 Score = 246 bits (622), Expect = 1e-062 Identities = 136/385 (35%), Positives = 229/385 (59%), Gaps = 19/385 (4%) Frame = +3 Query: 558 GFTRPSASPWGSPVLFVKKK------DGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 G RPS SP+ SP V KK + R+ ID+++LN+ + ++YP+P I + L Sbjct: 182 GIIRPSRSPYNSPTWVVDKKGTDPYGNPKKRLVIDFRKLNEKTIPDRYPMPSIPMILASL 241 Query: 720 QGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGI 899 A F+ +D SGYHQ+ + D KT+F YEF + FGL NA + F ++ I Sbjct: 242 GKAKYFTTLDLKSGYHQIYLAEHDREKTSFSVSSGKYEFCRLPFGLRNASSIFQRAIDDI 301 Query: 900 LKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG 1079 L+ ++ +++DD++++SK+ EH H+ IVL+ L + + K +F+ + + FLG Sbjct: 302 LREHIGKICFVYVDDVIIFSKNETEHVQHINIVLKCLLDANMRVGPEKTQFFKESIEFLG 361 Query: 1080 HVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTK- 1256 +V+K+ DP K++ ++ + P +V VRSF+GLASYYR F+K F+++A ++++ K Sbjct: 362 FIVTKNGATSDPKKVKAIQEFPEPKSVYSVRSFLGLASYYRVFIKDFAAIARPISDILKG 421 Query: 1257 ----------QSVPSVWSDECEESFQKLNTLLTTAPI-LNLPVEGKNFIVYCDASYWGLG 1403 + +P +++ E+F +L +L + + L P K F + DAS G+G Sbjct: 422 ENGSVSKHVSKKIPVEFNEVQREAFLRLRNILASEDVMLMYPDFQKPFDLTTDASASGIG 481 Query: 1404 AALMKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVK-CEVYTDHRSL 1580 A L + I SR LK E+NY T++ EL A+V+AL + +++LYG + ++TDH+ L Sbjct: 482 AVLSQGNRPITMISRALKQAEQNYATNERELLAIVWALGRLQNFLYGSREINIFTDHQPL 541 Query: 1581 QYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRK 1712 + K N + +RW + ++ + Y P K N+VADALSR+ Sbjct: 542 TFAVADKNTNSKIKRWKSYIDQHNAKMFYKPGKENLVADALSRQ 585 Score = 39.9 bits (91), Expect = 1.8 Identities = 44/210 (20%), Positives = 74/210 (34%), Gaps = 2/210 (0%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H A + + + +++++ M E VA C C K KY+ L PIP + E Sbjct: 724 HRAAQENIKQVLRNYYFPNMGNLAKEVVANCRVCTKAKYDRHPKKQELGETPIPSYTGEM 783 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 + +D K +D+ +K A P+ + L +++ L Sbjct: 784 LHIDIFATDKK------QFLTCIDKFSKFAIVQPILSRTIVDITGPLL--QIVNLFPATK 835 Query: 2420 PIISDRCTKFTS-MFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE-F 2593 I D F S L G + H ++GQ ER L ++ R ++ Sbjct: 836 TIFCDNEAAFNSETITSMLRNAYGICIVNAAPLHSTSNGQVERFHSTLTEIARCLKLDKK 895 Query: 2594 AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALY 2689 + A YN S S P E ++ Sbjct: 896 ISDTTELILKATIEYNKSLHSVTREKPIEVVH 927 >gb|AAA28035.1| (L23646) homology with S. pombe protease; putative [Caenorhabditis elegans] Length = 1745 Score = 243 bits (614), Expect = 8e-062 Identities = 160/501 (31%), Positives = 249/501 (48%), Gaps = 12/501 (2%) Frame = +3 Query: 378 IVREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSK 557 ++ +F DVF + + + I+L+ G PI + ++ Sbjct: 627 VIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQ 686 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 R S SPW SPV+ VKKKDGS RMCIDY+++NKV N +PLP+I+ L G + Sbjct: 687 KVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLY 746 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLD 917 + D +G+ Q+ + TAF +E+ V+ FGL +PA F M I+ L Sbjct: 747 TVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLG 806 Query: 918 LFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD 1097 + +++DD+L+ SK ++H ++ L +R+ + + SKC V +LGH V+ D Sbjct: 807 VCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLD 866 Query: 1098 *VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVW 1277 V SF+GL YYR+F+ F+ +AS LT+L V +W Sbjct: 867 GVETQ-------------------ESFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIW 907 Query: 1278 SDECEESFQKLNTLLTTAPILNLP-VEG-----KNFIVYCDASYWGLGAALMKE-----K 1424 E E +FQ+L L+ P+L P VE + F++Y DAS G+GA L +E + Sbjct: 908 EKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQ 967 Query: 1425 NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKY 1604 + IA+AS+ L E Y DLE A++FAL+++K +YG V+TDH+ L + Sbjct: 968 HPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGSP 1027 Query: 1605 LNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSR-RPLAREVQT 1781 L R RW + ++D+ I+Y KAN VADALSR L Q + +QT Sbjct: 1028 LADRLWRWSIEILEFDVKIVYLAGKANAVADALSRGGCPPNELEEEQTKELTSIVNAIQT 1087 Query: 1782 LANDLMRLEVNEKGGFLAYVEERSSFLDKIKGK 1880 D++ + S +L+++KG+ Sbjct: 1088 ELPDIL---------------DSSCWLERLKGE 1105 Score = 54.7 bits (129), Expect = 6e-005 Identities = 70/307 (22%), Positives = 131/307 (41%), Gaps = 5/307 (1%) Frame = +2 Query: 2051 LSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGAL--QRMPIPK 2224 L+ H G KM+R + + F+W +M+ + V C C +H +L RM P Sbjct: 1176 LAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCAN-DHSKLTSSLTPYRMTFP- 1233 Query: 2225 FKWEKIAMDFV-VGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISE-VI 2398 E +A D + VG +Y I I+D TK +P+ AE K ++ I Sbjct: 1234 --LEIVACDLMDVGLSVQGNRY--ILTIIDLFTKYGTAVPIP-DKKAETVLKAFVERWAI 1288 Query: 2399 RLHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRA 2578 +PL +++D+ +F + + L ++ +G ER + + +++ Sbjct: 1289 GEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKK 1348 Query: 2579 CVVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDL 2758 WD + A ++YNN + P ++GR P+ E+ +L Sbjct: 1349 -KTAVPMEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPL------EMSGEDAEL 1401 Query: 2759 LR-ESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGK 2935 L+ + + K ++E+ +KY +K R + G +VLL++ K + K Sbjct: 1402 LKVQKIAKEHAMREQESYKSLFDQKYASKKHRFPQ--PGSRVLLEIPSEK---LGAQCPK 1456 Query: 2936 LSPRYIGPFKVL 2971 L ++ GP++V+ Sbjct: 1457 LVNKWSGPYRVI 1468 >dbj|BAB01983.1| (AP002459) retroelement pol polyprotein-like [Arabidopsis thaliana] Length = 865 Score = 241 bits (609), Expect = 3e-061 Identities = 142/309 (45%), Positives = 186/309 (59%), Gaps = 4/309 (1%) Frame = +3 Query: 1101 VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWS 1280 V VD KIE +K W RPTN T +RSF+GLA YYRRFVKGF+S+A LT LT ++VP VWS Sbjct: 298 VSVDLEKIEAIKDWPRPTNATEIRSFLGLAGYYRRFVKGFASMAPPLTKLTGKNVPFVWS 357 Query: 1281 DECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKV 1460 ECEE F L +LT+ P+L LP G++++VY DAS GLG LM+ VIAYASRQL+ Sbjct: 358 PECEEGFVSLKEILTSTPVLALPEHGESYMVYTDASRVGLGCVLMQRGKVIAYASRQLRK 417 Query: 1461 HERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELL 1640 HE NYPTHDLE++A V+TDH+SL+Y+ TQ LNLRQRRWMEL+ Sbjct: 418 HEGNYPTHDLEMSA------------------VFTDHKSLKYIITQPELNLRQRRWMELV 459 Query: 1641 KDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQTLANDLMRLEV--- 1811 DYD+ I YH KA+VVADALSRK +V P + V+ L +++ L + Sbjct: 460 ADYDLEIAYHHGKASVVADALSRK----------RVGVAP-GQSVEALVSEIRALRLCAV 508 Query: 1812 -NEKGGFLAYVEERSSFLDKIKGKQFNDEKLIMFPYKELLGKANEAIIDEGGVL*VKGGV 1988 E G A +R L +++ Q DE LI E ++ G + V G V Sbjct: 509 AREPLGLEAV--DRVDLLSRVRLAQEKDEGLIAASKAE----GSKYQFAANGTILVHGRV 562 Query: 1989 CIPRVDDITKTIL 2027 C+ +++ + IL Sbjct: 563 CVLNDEELRREIL 575 Score = 235 bits (593), Expect = 2e-059 Identities = 119/276 (43%), Positives = 173/276 (62%), Gaps = 1/276 (0%) Frame = +2 Query: 2453 SMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFLPLAEF 2632 S FW+ E+GT+V + T +HP TDGQ ERTIQ LEDMLR CV+++ GHW L L EF Sbjct: 584 STFWRAFQAEMGTKVQMSTPYHPQTDGQFERTIQTLEDMLRMCVLDWGGHWADHLSLVEF 643 Query: 2633 SYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKCIQEKHLAA 2812 +YNNSYQ+ I MAPFEALYGR CR+P+ W E +G D ++E+ ++++ ++ A Sbjct: 644 AYNNSYQAGIGMAPFEALYGRPCRTPLCWTQVGERSIYGADYVQETTERIRVLKLNMKEA 703 Query: 2813 QSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVLKRVGEVA 2992 Q R+ Y ++ R+ EF G++V LK++ ++G KLS RY+GPF++++RVG VA Sbjct: 704 QDRQWSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSLRYMGPFRIVERVGPVA 763 Query: 2993 YELALPPGLSGVHPVFYVSML-KTYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVPK 3169 Y L LP + H VF+VSML K H D + + L N++ E V +L+R + + Sbjct: 764 YMLELPDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPED-LQPNMTLEARQVRVLERRIKE 822 Query: 3170 LRSREIASIKVQWKNRPVEESTWEKEADMQERYPHLF 3280 L+ ++I+ IKV W V E TW+ EA M+ R+ F Sbjct: 823 LQRKKISLIKVLWDCDGVTEETWQPEARMKARFKKWF 859 >gb|AAF24529.1|AC007534_10 (AC007534) F7F22.15 [Arabidopsis thaliana] Length = 1862 Score = 240 bits (605), Expect = 1e-060 Identities = 147/379 (38%), Positives = 209/379 (54%), Gaps = 22/379 (5%) Frame = +3 Query: 573 SASPWGSPVLFVKKKDGSF------------------RMCIDYKQLNKVNVKNKYPLPHI 698 S S W SPV V KKDG RMCIDY++LN + K+ +PLP I Sbjct: 990 SDSTWVSPVHCVPKKDGMIVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFI 1049 Query: 699 DNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAF 878 D + ++L + +D SG+ Q+ I D KT F Y + + M FGL NAPA F Sbjct: 1050 DQMLERLANHPYYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATF 1109 Query: 879 MSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWL 1058 M I + V +F+DD VY S +L VL E L + KC F + Sbjct: 1110 QRCMTSIFSDLIKEMVEVFMDDFSVYGPSFSSCLLNLGRVLTRCEETNLVLNWEKCHFMV 1169 Query: 1059 D*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQ 1238 LGH +S+ + VD K+EV+ + P V +RSF+G A +YRRF+K FS +A Sbjct: 1170 KEGIVLGHKISEKGIEVDKGKVEVMMQLQPPKTVKDIRSFLGHAGFYRRFIKDFSKIARP 1229 Query: 1239 LTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAAL-- 1412 LT L + + D+C +SFQ + L +AP++ P F + CDAS + +GA L Sbjct: 1230 LTRLLCKETEFKFDDDCLKSFQTIKDALVSAPVVRAPNWDYPFEIMCDASDYAVGAVLGQ 1289 Query: 1413 --MKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQY 1586 K+ +VI YASR L + Y T + EL AVVFA ++++ YL G K VYTDH +L++ Sbjct: 1290 KIDKKLHVIYYASRTLDDAQGRYATTEKELLAVVFAFEKFRSYLVGSKVTVYTDHAALRH 1349 Query: 1587 VFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSR 1709 ++ +K R RW+ LL+++D+ I+ N AD LSR Sbjct: 1350 LYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGAADHLSR 1390 Score = 102 bits (253), Expect = 2e-019 Identities = 87/291 (29%), Positives = 146/291 (49%), Gaps = 20/291 (6%) Frame = +2 Query: 2090 LKQHFWWSRMKRDIVEFVAQCPNCQK---VKYEHQMPGGALQRMPIPKFKWEKIAMDFVV 2260 L+ FWW M +D EFV++C +CQ+ + ++MP + + I ++ +DF+ Sbjct: 1518 LQAGFWWPTMFKDAQEFVSKCDSCQRKGNISRRNEMPQNPILEVEI----FDVWGIDFMG 1573 Query: 2261 GFPKTIG-KYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDR 2437 FP + G KY I V VD ++K I T +A+ KL+ + + GVP +ISD Sbjct: 1574 PFPSSYGNKY--ILVAVDYVSKWVEAI-ASPTNDAKVVLKLFKTIIFPRFGVPRVVISDG 1630 Query: 2438 CTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFL 2617 F + ++ L ++ G + + T ++P T GQ E + + ++ +L V W + L Sbjct: 1631 GKHFINKVFENLLKKHGVKHKVATPYNPQTSGQVEISNREIKTILEKTVGITRKDWSAKL 1690 Query: 2618 PLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRP-WGTDLLR---------- 2764 A ++Y ++++ I PF LYG+ C P+E E + W LL Sbjct: 1691 DDALWAYRTTFKTPIGTTPFNLLYGKSCHLPVE----LEYKAMWAVKLLNFDIKTAEEKR 1746 Query: 2765 ----ESLDKVKC-IQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKR 2929 LD+++ E + R K + +K+ +F G+QVLL S +K Sbjct: 1747 LIQLSDLDEIRLEAYESSKIYKERTKLFHDKKIITKDFQVGDQVLLFNSRLKLF-----P 1801 Query: 2930 GKLSPRYIGPF 2962 GKL R+ GPF Sbjct: 1802 GKLKSRWSGPF 1812 >dbj|BAB10790.1| (AB028613) retroelement pol polyprotein-like [Arabidopsis thaliana] Length = 1864 Score = 238 bits (602), Expect = 2e-060 Identities = 145/379 (38%), Positives = 212/379 (55%), Gaps = 22/379 (5%) Frame = +3 Query: 573 SASPWGSPVLFVKKKDG------------------SFRMCIDYKQLNKVNVKNKYPLPHI 698 S S W SPV +V KK G RMCIDY++LN + K+ +PLP I Sbjct: 991 SDSTWVSPVHYVPKKGGMTVVKNSKDELIPTRTTTGHRMCIDYRKLNAASRKDHFPLPFI 1050 Query: 699 DNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAF 878 D + ++L + +D SG+ Q+ I D KT F Y + + M FGL NAPA F Sbjct: 1051 DQMLERLANHPYYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATF 1110 Query: 879 MSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWL 1058 M I ++ V +F+DD VY S +L VL+ E L + KC F + Sbjct: 1111 QRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEKCHFMV 1170 Query: 1059 D*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQ 1238 LGH +S++ + VD K++V+ + P V +RSF+G A +YRRF+K FS +A Sbjct: 1171 REGIVLGHKISEEGIEVDKAKVDVMMQLQPPKTVKDIRSFLGHAGFYRRFIKDFSKLARP 1230 Query: 1239 LTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAAL-- 1412 LT L + + DEC +F+ + L TAPI+ P F + C+AS + +GA L Sbjct: 1231 LTRLLCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPFEIMCNASDYAVGAVLGQ 1290 Query: 1413 --MKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQY 1586 K+ +VI YASR + + Y T + EL AVVFA ++++ YL G K VYTDH +L++ Sbjct: 1291 RIDKKLHVIYYASRTMDDAQVRYATTEKELLAVVFAFEKFRSYLVGSKVTVYTDHAALRH 1350 Query: 1587 VFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSR 1709 ++ +K R RW+ LL+++D+ I+ N VAD LSR Sbjct: 1351 IYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGVADHLSR 1391 Score = 105 bits (259), Expect = 4e-020 Identities = 87/293 (29%), Positives = 148/293 (49%), Gaps = 20/293 (6%) Frame = +2 Query: 2090 LKQHFWWSRMKRDIVEFVAQCPNCQK---VKYEHQMPGGALQRMPIPKFKWEKIAMDFVV 2260 L+ FWW M +D EF+++C +CQ+ + ++MP + + I ++ +DF+ Sbjct: 1520 LQAGFWWPSMFKDAQEFISKCDSCQRRGNISRRNEMPQNPILEVEI----FDVWGIDFMG 1575 Query: 2261 GFPKTIG-KYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDR 2437 FP + G KY I V VD ++K I T +A KL+ + + GVP +ISD Sbjct: 1576 PFPSSYGNKY--ILVAVDYVSKWVEAI-ASPTNDARVVLKLFKTIIFPRFGVPRIMISDG 1632 Query: 2438 CTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFL 2617 F + ++ L ++ G + + T +HP T GQ E + + ++ +L V W + L Sbjct: 1633 GKHFINKVFENLLKKHGVKHKVATPYHPQTSGQVEISNREIKAILEKIVGSTRKDWSAKL 1692 Query: 2618 PLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRP-WGTDLLR---ESLDKVK 2785 A ++Y ++++ I PF LYG+ C P+E E + W LL ++ ++ + Sbjct: 1693 DDALWAYRTAFKTPIGTTPFNLLYGKSCHLPVE----LEYKAMWAVKLLNFDIKTAEEKR 1748 Query: 2786 CIQ------------EKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKR 2929 IQ E + R K + +K+ +F G+QVLL S ++ Sbjct: 1749 LIQLNDLNEIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQVLLFNSRLRLF-----P 1803 Query: 2930 GKLSPRYIGPFKV 2968 GKL R+ GPF V Sbjct: 1804 GKLKSRWSGPFSV 1816 >dbj|BAA92706.1| (AB036888) reverse transcriptase [Tricholoma sejunctum] Length = 327 Score = 233 bits (588), Expect = 9e-059 Identities = 127/318 (39%), Positives = 199/318 (61%), Gaps = 9/318 (2%) Frame = +3 Query: 675 NKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFG 854 N+Y LP I L +QL+GA F+K+D GY+ + ++ D K AF T + +E LVM FG Sbjct: 1 NRYSLPLILELVNQLRGAKYFTKLDVRWGYNNVCMKEGDEWKAAFRTNHGLFEPLVMFFG 60 Query: 855 LTNAPAAFMSLMNGILKPYL-DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 LTN+P+ F ++MN I + + V +++DDIL++SK+ +E +RIVLE LR+ KLY Sbjct: 61 LTNSPSTFQTMMNDIFHDLIMEGVVCIYLDDILIFSKTLEEQHQVMRIVLERLRKHKLYL 120 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 + KCEF + +LG ++S+ + +DP K+ V W T V+SF+G A++YRRF+ Sbjct: 121 QHDKCEFERTSIKYLGLIISEGKIRMDPVKVAGVAEWPTLTKKKEVQSFLGFANFYRRFI 180 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASY 1391 +GFS L TK+ W+ E +E+F +L +T++PIL + K F + D+S Sbjct: 181 EGFSHHTKPLFEPTKKDRKWSWNSEEQEAFNELKGCITSSPILRFANDLKAFRIEADSSD 240 Query: 1392 WGLGAALMKEK------NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV-- 1547 + +GA L ++ + +A+ S+ L V +RNY HD E+ V+ AL++W+H+L G Sbjct: 241 FVMGAVLSQQSTDDLKWHPVAFYSKSLNVVKRNYEIHDKEMLTVMRALEEWRHFLEGARH 300 Query: 1548 KCEVYTDHRSLQYVFTQKYLNLRQRRW 1628 K E++TDH++L+Y T K LN RQ W Sbjct: 301 KIEIWTDHKNLEYFMTAKKLNCRQAHW 327 >gb|AAG13430.1|AC051634_11 (AC051634) putative plant disease resistance polyprotein; 68876-72133 [Oryza sativa] Length = 921 Score = 232 bits (586), Expect = 2e-058 Identities = 146/407 (35%), Positives = 210/407 (50%), Gaps = 3/407 (0%) Frame = +2 Query: 2051 LSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFK 2230 L H G Y +K+ F W +K D+ FV QC CQ+ K+EH G L +PIPK Sbjct: 490 LGGHSGIAATYHQIKKLFAWPGLKLDVENFVKQCQVCQQAKHEHCRLPGLLAPLPIPKEA 549 Query: 2231 WEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHG 2410 W+ I+MDF+ G P++ G Y++I V+VDR TK A+FIP+ + A + A L V + HG Sbjct: 550 WQDISMDFIEGLPRSDG-YNAILVVVDRFTKYANFIPLCHPFTASQVAHLVDKTVFKTHG 608 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 +P I+SDR FTS FW TL T++ + T +HP DGQ+ER Q LE LR Sbjct: 609 IPRSIVSDRDRLFTSKFWTTLFATWDTQLQMSTAYHPQIDGQTERVNQCLEMYLRCMTQA 668 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRES 2770 W ++ LAEF YN +Y +S+ +P +AL+G P D+ E Sbjct: 669 NPKKWSHWIHLAEFWYNTNYHTSLGCSPHKALFGVDPHYSQVPDLTLATLPDVVDVQTER 728 Query: 2771 LDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGK-RGKLSPR 2947 + +Q++ AQ R K + D F G+ V LK+ P + KL+ + Sbjct: 729 QHLSEFLQQQLTRAQLRMKNKADKGRSDRVFAVGDAVFLKLQPYAQSSVVNRPYPKLAYK 788 Query: 2948 YIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGN--YIIRWDSVLLDENL 3121 + GPF VL+R+G AY L LP S VHPVF+VS LK D Y V+LD Sbjct: 789 FFGPFTVLERIGVAAYRLDLPAS-STVHPVFHVSQLKAQVPDHTPVYTSLPSPVVLD--- 844 Query: 3122 SYEEEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQERYP 3271 + + P AIL+R + K + + ++W P + +TWE ++ R+P Sbjct: 845 AADVVPEAILERRLVKRGNAAHVQVLLKWSLLPADHATWEDYHVVKTRFP 894 Score = 72.2 bits (174), Expect = 3e-010 Identities = 47/157 (29%), Positives = 78/157 (48%) Frame = +3 Query: 1278 SDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLK 1457 +D + +F +L T ++ P+L LP F + DA +GLGA L ++ + IAY S+ L Sbjct: 265 TDATQLAFDQLKTAMSNTPVLALPYFQLPFTLETDACAYGLGAVLSQQGHPIAYYSKTLG 324 Query: 1458 VHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMEL 1637 + ++ E A++ + +W+ YL + TDH+SL ++ + Q++ M Sbjct: 325 PVNQKLSIYEKEFLAIMMVVDKWRCYLQRGPFIIKTDHKSLCHLDDEILGTELQQKAMTK 384 Query: 1638 LKDYDITILYHPEKANVVADALSRKAGSMESLAHSQV 1748 L + Y N+VADALSR S + A S V Sbjct: 385 LMGLQYSFQYKRGVDNIVADALSRMPSSSQFCALSVV 421 >gb|AAF24531.1|AC007534_12 (AC007534) F7F22.17 [Arabidopsis thaliana] Length = 1799 Score = 231 bits (583), Expect = 4e-058 Identities = 134/360 (37%), Positives = 198/360 (54%), Gaps = 4/360 (1%) Frame = +3 Query: 630 RMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAF 809 RMCIDY++LN + K+ +PLP ID + ++L + +D +G+ Q+ I D KT F Sbjct: 1013 RMCIDYRKLNAASRKDHFPLPFIDQMLERLANHPYYCFLDGYNGFFQIPIHPNDQEKTTF 1072 Query: 810 WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HL 989 Y + + M FGL NAPA F M I ++ V +F+DD VY S +L Sbjct: 1073 TCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGPSFSSCLLNL 1132 Query: 990 RIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*V 1169 VL E L + KC F + LGH +S+ + VD K+EV+ + P V + Sbjct: 1133 GRVLTRCEETNLVLNWEKCHFMVKEGIVLGHKISEKGIEVDKGKVEVMMQLQPPKTVKDI 1192 Query: 1170 RSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLP 1349 RSF+G A +YRRF+K FS +A LT L + + D+C +SFQ + L +AP++ P Sbjct: 1193 RSFLGHAGFYRRFIKDFSKIARPLTRLLCKETEFKFDDDCLKSFQTIKDALVSAPVVRAP 1252 Query: 1350 VEGKNFIVYCDASYWGLGAAL----MKEKNVIAYASRQLKVHERNYPTHDLELAAVVFAL 1517 F + CDAS + +GA L K+ +VI YASR L + Y T + EL VVFA Sbjct: 1253 NWDYPFEIMCDASDYAVGAVLGQKIDKKLHVIYYASRTLDDAQGRYATTEKELLVVVFAF 1312 Query: 1518 KQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVAD 1697 ++++ YL G K VYTDH +L++++ +K R RW+ LL+++D+ I+ N AD Sbjct: 1313 EKFRSYLVGSKVTVYTDHAALRHLYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGAAD 1372 Query: 1698 ALSR 1709 LSR Sbjct: 1373 HLSR 1376 Score = 101 bits (248), Expect = 7e-019 Identities = 87/291 (29%), Positives = 145/291 (48%), Gaps = 20/291 (6%) Frame = +2 Query: 2090 LKQHFWWSRMKRDIVEFVAQCPNCQK---VKYEHQMPGGALQRMPIPKFKWEKIAMDFVV 2260 L+ FWW M +D EFV++C +CQ+ + ++MP + + I ++ +DF+ Sbjct: 1455 LQAGFWWPTMFKDAQEFVSKCDSCQRKGNISRRNEMPQNPILEVEI----FDVWGIDFMG 1510 Query: 2261 GFPKTIG-KYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDR 2437 FP + G KY I V VD ++K I T +A+ KL+ + + GVP +ISD Sbjct: 1511 PFPSSYGNKY--ILVAVDYVSKWVEAI-ASPTNDAKVVLKLFKTIIFPRFGVPRVVISDG 1567 Query: 2438 CTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFL 2617 F + ++ L ++ G + + T ++P T GQ E + + ++ +L V W + L Sbjct: 1568 GKHFINKVFENLLKKHGVKHKVATPYNPQTSGQVEISNREIKTILEKTVGITRKDWSAKL 1627 Query: 2618 PLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRP-WGTDLLR---------- 2764 A ++Y ++++ I PF LYG+ C P+E E + W LL Sbjct: 1628 DDALWAYRTAFKTPIGTTPFNLLYGKSCHLPVE----LEYKAMWAVKLLNFDIKTAEEKR 1683 Query: 2765 ----ESLDKVKC-IQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKR 2929 LD+++ E + R K + +K+ +F G QVLL S +K Sbjct: 1684 LIQLSDLDEIRLEAYESSKIYKERTKLFHDKKIITKDFQFGVQVLLFNSRLKLF-----P 1738 Query: 2930 GKLSPRYIGPF 2962 GKL R+ GPF Sbjct: 1739 GKLKSRWSGPF 1749 >emb|CAA27750.1| (X04132) ORF 4 (RNA2) [Drosophila melanogaster] Length = 1237 Score = 230 bits (581), Expect = 6e-058 Identities = 139/380 (36%), Positives = 207/380 (53%), Gaps = 10/380 (2%) Frame = +3 Query: 570 PSASPWGSPVLFVKKKDG------SFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGAC 731 PS S + SP+L V KK +R+ IDY+Q+NK + +K+PLP ID++ DQL A Sbjct: 345 PSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAK 404 Query: 732 TFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPY 911 FS +D SG+HQ+++ T+F T Y F + FGL AP +F +M Sbjct: 405 YFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGI 464 Query: 912 LDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 L++DD++V S K +L V RE L KC F++ V+FLGH + Sbjct: 465 EPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCT 524 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 ++ D K +V++++ P + R FV +YYRRF+K F+ + +T L K++VP Sbjct: 525 DKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPF 584 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKN----VIAY 1439 W+DEC+++F L + L +L P K F + DAS GA L + N +AY Sbjct: 585 EWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAY 644 Query: 1440 ASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQ 1619 ASR E N T + ELAA+ +A+ ++ Y+YG V TDHR L Y+F+ + + Sbjct: 645 ASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKL 704 Query: 1620 RRWMELLKDYDITILYHPEKANVVADALSR 1709 R L++Y+ T+ Y K N VADALSR Sbjct: 705 TRIRLELEEYNFTVEYLKGKDNHVADALSR 734 Score = 90.1 bits (220), Expect = 1e-015 Identities = 76/303 (25%), Positives = 130/303 (42%), Gaps = 6/303 (1%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G TK +K+H++W M + I E+V +C CQK K + P+ +++ Sbjct: 909 HTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTK-TPMTITETPEHAFDR 967 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 + +D + PK+ + ++ LTK IP+ +A+ AK I +G Sbjct: 968 VVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPI-ANKSAKTVAKAIFESFILKYGPMK 1026 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I+D T++ + L + L + T H T G ER+ + L + +R+ + Sbjct: 1027 TFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKT 1086 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGT--DLLRES- 2770 WD +L + +N + + P+E ++GR P + + P D +ES Sbjct: 1087 DWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHFNKLHSIEPIYNIDDYAKESK 1146 Query: 2771 --LDKVKCIQEKHLAAQSRKKKYVVQ-KVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLS 2941 L+ K L A K K KV+D E G++VLL+ KL Sbjct: 1147 YRLEVAYARARKLLEAHKEKNKENYDLKVKDIELEVGDKVLLRNE---------VGHKLD 1197 Query: 2942 PRYIGPFKV 2968 +Y GP+K+ Sbjct: 1198 FKYTGPYKI 1206 >dbj|BAA92424.1| (AB039862) pol (reverse transcriptase-RNase H) [Tricholoma nauseosum] Length = 326 Score = 228 bits (574), Expect = 4e-057 Identities = 126/318 (39%), Positives = 191/318 (59%), Gaps = 9/318 (2%) Frame = +3 Query: 675 NKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFG 854 N +PLP I + D++ A F+K+D GY+ ++I+ D K AF +E LVM FG Sbjct: 1 NAHPLPLISEIIDKVGKAKVFTKLDLQWGYNNVRIKKGDEWKAAFAMHQGSFELLVMFFG 60 Query: 855 LTNAPAAFMSLMNGILKPYLDL-FVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 +TN+P F ++MN I K +D VI+FIDDIL++++ + HE ++ VL L E L+ Sbjct: 61 MTNSPPTFHNMMNDIFKDVIDKGVVIIFIDDILIFTEDEENHEAIVQEVLRRLAENDLFL 120 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 K KC F + FLG ++ D + +DP K++ + W PT V V++F+GLA+YYRRFV Sbjct: 121 KPEKCVFGASEIEFLGLLIGPDGIKMDPIKVQAITDWPAPTRVKEVQAFLGLANYYRRFV 180 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFI-VYCDAS 1388 FS +A+ L NLT++ V W ++ + +F++L PIL PV+ + + V DAS Sbjct: 181 HNFSKIAAPLHNLTRKGVVWRWGEQQQTAFEELKRKFVEGPIL-APVDFTHPLRVESDAS 239 Query: 1389 YWGLGAALM-----KEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV-- 1547 + G L + + AY S+ L ERNY HD E+ ++ AL+ W+HYL G Sbjct: 240 NFATGVVLSMLCKDDKWHPCAYLSKGLNDVERNYDVHDKEMLGIIRALEVWRHYLEGCMH 299 Query: 1548 KCEVYTDHRSLQYVFTQKYLNLRQRRW 1628 + E++ DH++LQY + K LN RQ RW Sbjct: 300 QIEIWMDHQNLQYFMSAKKLNHRQARW 326 >dbj|BAA92425.1| (AB039863) pol (reverse transcriptase-RNase H) [Tricholoma magnivelare] Length = 326 Score = 227 bits (573), Expect = 5e-057 Identities = 129/318 (40%), Positives = 192/318 (59%), Gaps = 9/318 (2%) Frame = +3 Query: 675 NKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFG 854 N +PLP I + D++ A F+K+D GY+ ++I+ D K AF T +E LVM F Sbjct: 1 NAHPLPLISEIIDKVGKAKVFTKLDLRWGYNNVRIKKGDEWKAAFPTCRGSFEPLVMFFR 60 Query: 855 LTNAPAAFMSLMNGILKPYLDL-FVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 +TN+P F ++MN I K +D VILFIDDIL++++ + HE ++ VL+ L E L+ Sbjct: 61 MTNSPPTFQNMMNDIFKDVIDKGMVILFIDDILIFTEDEENHEAIVQEVLQRLAENNLFL 120 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 K KC F + FLG + D + +DP K++V+ W PT+V V++ +GLA+YYRRFV Sbjct: 121 KPEKCVFGASEIEFLGLSIGPDGIKMDPIKVQVITDWPAPTHVKEVQALLGLANYYRRFV 180 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVE-GKNFIVYCDAS 1388 FS +A+ L NL ++ V W ++ + +F++L PIL PV+ + V DAS Sbjct: 181 HNFSKIAAPLHNLMRKGVVWRWGEQQQTAFEELKRKFVEGPIL-APVDFMRPLRVESDAS 239 Query: 1389 YWGLGAALM-----KEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV-- 1547 + GA L + + AY SR L ERNY HD E+ ++ AL+ W+HYL G Sbjct: 240 NFATGAVLSMLCEDDKWHPCAYLSRGLNDVERNYDVHDKEMLGIIRALEAWRHYLEGCTH 299 Query: 1548 KCEVYTDHRSLQYVFTQKYLNLRQRRW 1628 + E++TDH++LQY + K LN RQ RW Sbjct: 300 QIEIWTDHQNLQYFMSAKKLNHRQARW 326 >dbj|BAB02630.1| (AP002054) retroelement pol polyprotein-like [Arabidopsis thaliana] Length = 897 Score = 226 bits (569), Expect = 2e-056 Identities = 141/379 (37%), Positives = 205/379 (53%), Gaps = 22/379 (5%) Frame = +3 Query: 573 SASPWGSPVLFVKKKDG------------------SFRMCIDYKQLNKVNVKNKYPLPHI 698 S S W S V V KK G RMCIDY++LN + K+ +PLP I Sbjct: 74 SDSTWVSLVYCVPKKGGMTVVKNEKDELIPTRTITGHRMCIDYRKLNAASRKDHFPLPFI 133 Query: 699 DNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAF 878 D + ++L + +D SG+ Q+ I D KT F Y + + M FGL NAPA F Sbjct: 134 DQMLERLANHPYYCFLDGYSGFFQIPIHPNDQEKTTFTCPYGTFAYKRMPFGLCNAPATF 193 Query: 879 MSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWL 1058 M I ++ V +F+DD Y S +L VL E L + KC F + Sbjct: 194 QRCMTSIFSDLIEEMVEVFMDDFSGYGPSFSSCLLNLGRVLTRCEETNLVLNWEKCHFMV 253 Query: 1059 D*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQ 1238 LGH +S+ + VD K+EV+ + P V +RSF+G A +YRRF+K FS + Sbjct: 254 KEGIVLGHKISEKGIEVDKGKVEVMMQLQPPKTVKEIRSFLGHAGFYRRFIKDFSKIVRP 313 Query: 1239 LTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAAL-- 1412 LT L + + ++C +SFQ + L +AP++ P F + CDAS + +GA L Sbjct: 314 LTRLLCKETEFEFDEDCLKSFQTIKDALVSAPVVRAPNWDYPFEIMCDASDYVVGAVLGQ 373 Query: 1413 --MKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQY 1586 K+ +VI YASR L + Y T + EL AVVFA ++++ YL G K VYTDH +L++ Sbjct: 374 KIDKKLHVIYYASRTLDDAQGRYATTEKELLAVVFAFEKFRSYLVGSKVTVYTDHAALRH 433 Query: 1587 VFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSR 1709 ++ +K R RW+ LL+++D+ I+ N AD L R Sbjct: 434 LYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGAADHLLR 474 Score = 106 bits (261), Expect = 2e-020 Identities = 88/295 (29%), Positives = 149/295 (49%), Gaps = 20/295 (6%) Frame = +2 Query: 2090 LKQHFWWSRMKRDIVEFVAQCPNCQK---VKYEHQMPGGALQRMPIPKFKWEKIAMDFVV 2260 L+ FWW M +D EFV++C +CQ+ + ++MP + + I ++ +DF+ Sbjct: 553 LQAGFWWPTMFKDAQEFVSKCDSCQRKDNISRINEMPQNPIVEVEI----FDVWGIDFMG 608 Query: 2261 GFPKTIG-KYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDR 2437 FP + G KY I V +D ++K I + T +A+ KL+ + + GVP +ISD Sbjct: 609 LFPSSYGNKY--ILVAIDYVSKWVEAIAIP-TNDAKVVLKLFKTIIFPRFGVPRVVISDG 665 Query: 2438 CTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFL 2617 F + ++ L ++ G + + T +HP T GQ E + + ++ +L V W + L Sbjct: 666 GKHFINKVFENLLKKHGVKHKVATPYHPQTSGQVEISDREIKTILEKTVGITRKDWSAKL 725 Query: 2618 PLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRP-WGTDLLR---------- 2764 A ++Y ++++ I PF LYG+ C P+E E + W LL Sbjct: 726 DDALWAYRTAFKTPIGTTPFNILYGKSCHLPVE----LEYKAMWAVKLLNFDIKTAEEKR 781 Query: 2765 ----ESLDKVKC-IQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKR 2929 LD+++ E + R K + +K+ +F G+QVLL S +K Sbjct: 782 LIQLSDLDEIRLEAYESSKIYKERTKLFHDKKIITKDFQVGDQVLLFNSRLKLF-----P 836 Query: 2930 GKLSPRYIGPFKVLK 2974 GKL R+ GPF + K Sbjct: 837 GKLKSRWSGPFCITK 851 >emb|CAA32198.1| (X14037) polyprotein [Drosophila melanogaster] Length = 1053 Score = 224 bits (565), Expect = 5e-056 Identities = 155/467 (33%), Positives = 233/467 (49%), Gaps = 7/467 (1%) Frame = +3 Query: 333 LIDDTTQIPSIESVSIVREFLDVFPTDLPGMPPDRDI---DFCIDLEPGTRPISIPSYTM 503 L D T++ E ++ E L+ T P + + I L T+ + Y + Sbjct: 407 LSDIDTELVDNEKAQLI-ELLEKHSTSFTNGIPHTRVNTGEMKIRLIDPTKTVQRRPYRL 465 Query: 504 APTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKY 683 +P RPS SP+ SP+L VKKK+G+ R+C+D+++LN + +KY Sbjct: 466 SPEEREVVRMQVSELIRCNIVRPSCSPFASPMLLVKKKNGTDRLCVDFRELNSNTISDKY 525 Query: 684 PLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTN 863 PLP I + +L+GA F+ +D +SG+HQ+ I V TAF + GL N Sbjct: 526 PLPLISDQIARLRGANYFTCLDMASGFHQIPIHPESVEYTAF-----------VPDGLKN 574 Query: 864 APAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSK 1043 AP+ F + L + FVI+++DDI+V S + + L+ VL +L + +K Sbjct: 575 APSVFQRTVINALGDLANSFVIVYMDDIMVVSPTKELALERLKTVLNVLTKAGFTFNLAK 634 Query: 1044 CEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFS 1223 C F V +LG+ V + + KI + S P V+ VR F+GLASY+R+FV GFS Sbjct: 635 CSFLKTTVQYLGYEVRAGEIRPNVRKIASLSSLPPPQTVSGVRQFIGLASYFRKFVSGFS 694 Query: 1224 SVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLG 1403 + L +L+ S WS E EE K+ T+LT P L + ++ DAS G G Sbjct: 695 QLMKPLYSLSSGSGKITWSAELEEIRLKVVTILTNEPALVIFDPQYPIELHTDASACGYG 754 Query: 1404 AALM----KEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH 1571 A L+ + +VI Y S+ E Y +++LE AVV A+K ++HYL G + VYTD Sbjct: 755 AILLHRIESKPHVIEYFSKTTTSVESRYHSYELETLAVVKAVKHFRHYLIGREFVVYTDC 814 Query: 1572 RSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESL 1733 SL+ T+ L R RW L+ ++ I Y K D LSR S E + Sbjct: 815 NSLKASRTKIDLTPRVHRWWAYLQSFNFEIQYREGKRMAHVDFLSRNPLSPEHI 868 >dbj|BAA22787.1| (AB007466) reverse transcriptase-like protein [Vicia faba] Length = 407 Score = 223 bits (562), Expect = 1e-055 Identities = 131/359 (36%), Positives = 196/359 (54%), Gaps = 4/359 (1%) Frame = +3 Query: 633 MCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFW 812 +CIDY++LN K+ +PLP ID + ++L + +D SGY+Q+ + D KT F Sbjct: 1 VCIDYRRLNLATRKDHFPLPFIDQMLERLADHEYYCFLDGYSGYNQIAVVPEDQEKTTFT 60 Query: 813 TRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLR 992 + + + + FGL NAPA F M I L+ ++ +F+DD V+ KS +L Sbjct: 61 CPFGIFSYRRIPFGLCNAPATFQRCMQSIFADMLEKYMEVFMDDFSVFGKSFDNCLSNLA 120 Query: 993 IVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VR 1172 +VLE +E L + KC F + LGH +S + VD KIEV+ PTN +R Sbjct: 121 LVLERCQESNLILNWEKCHFMVREGIVLGHKISYKGIEVDQAKIEVISKLHPPTNEKGIR 180 Query: 1173 SFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPV 1352 SF+G +YRRF++ FS + LT L + V+ EC +F+ L L +API+ P Sbjct: 181 SFLGHVGFYRRFIRDFSKIEKPLTTLLVKDKDFVFDKECVVAFETLKGKLVSAPIVVAPD 240 Query: 1353 EGKNFIVYCDASYWGLGAAL----MKEKNVIAYASRQLKVHERNYPTHDLELAAVVFALK 1520 F + CDAS +GA L K +VI YAS L + NY T + EL +V+A Sbjct: 241 WYLPFEIMCDASDIAVGAVLGQRREKRLHVIYYASHVLNPAQMNYATTEKELLVMVYAFD 300 Query: 1521 QWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADA 1700 +++ Y+ G K VYTDH +L+Y+F+++ R RW+ LL+++D+ I N VAD Sbjct: 301 KFRQYMLGSKVIVYTDHAALKYLFSKQDSKPRLLRWILLLQEFDVEIRDKRGCENTVADH 360 Query: 1701 LSR 1709 LSR Sbjct: 361 LSR 363 >dbj|BAA92705.1| (AB036887) reverse transcriptase [Tricholoma portentosum] Length = 327 Score = 217 bits (548), Expect = 5e-054 Identities = 114/318 (35%), Positives = 195/318 (60%), Gaps = 9/318 (2%) Frame = +3 Query: 675 NKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFG 854 N+YPLP I L +QL+GA F+K+D GY+ + ++ D K F +E LVM FG Sbjct: 1 NRYPLPLISELVNQLRGAKYFTKLDVQWGYNNVWMKEGDEWKAVFRMNCGLFEPLVMFFG 60 Query: 855 LTNAPAAFMSLMNGILKPYL-DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYA 1031 LT++P+ F ++MN I + + + V +++DDIL+++KS +E ++VLE+LR+ KL+ Sbjct: 61 LTSSPSTFQTMMNDIFQDLIMEGMVCIYLDDILIFAKSMEEQHRVTQLVLELLRKHKLFL 120 Query: 1032 KFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFV 1211 + KC+F + +L ++SK + +DP K+ + W TN V+SF+G A++Y RF+ Sbjct: 121 RHKKCKFEKTSIKYLRLIISKGEIYMDPVKVAGMMEWPTLTNRKEVQSFLGFANFYHRFI 180 Query: 1212 KGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASY 1391 +GFS + LTK+ W++ + +F ++ +T++PIL + K F + D+S Sbjct: 181 EGFSHHVKPMFKLTKKDHRWGWAEAEQSAFNEIKNCITSSPILRFADDSKAFRIKADSSD 240 Query: 1392 WGLGAALMKEK------NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGV-- 1547 + G+ L ++ + IA+ + L E+NY HD E+ AV+ +L++W+H+L GV Sbjct: 241 YATGSVLSQQSSDNLKWHPIAFYLKSLNAVEQNYEIHDKEMLAVMRSLEEWRHFLKGVKH 300 Query: 1548 KCEVYTDHRSLQYVFTQKYLNLRQRRW 1628 K +++ DH++L+Y T K LN RQ W Sbjct: 301 KVKIWMDHKNLEYFMTAKKLNCRQAHW 327 >gb|AAC47271.1| (U09586) protease, reverse transcriptase and RNase H [Tribolium castaneum] Length = 712 Score = 212 bits (534), Expect = 2e-052 Identities = 124/368 (33%), Positives = 196/368 (52%), Gaps = 5/368 (1%) Frame = +3 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 G + ASP+ SP+ KKKDG+ R+C+D + +N + + P D L + Sbjct: 332 GVIKREASPYASPMTVGKKKDGTVRICLDARMINSKMIADCESPPAADELLRRFHEIRYM 391 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLD 917 S ID S Y Q+ + TAF R Y + V+ FGL A +F M+ +L + Sbjct: 392 STIDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTEVR 451 Query: 918 LFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD 1097 FV+ +IDD+LV S++ EH HLR V E L++ ++ K F V FLGH+++ + Sbjct: 452 EFVVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKSNFIQKEVKFLGHILTIN 511 Query: 1098 *VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVW 1277 + DP KI ++++ P VR+F+GL ++YR+F +S+ L L ++ W Sbjct: 512 GIKADPEKISAIRNFPVPQKTKHVRAFLGLCNFYRKFCARYSAATQDLNKLLRKGEKWRW 571 Query: 1278 SDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK-----EKNVIAYA 1442 +E+F ++ L A +L P K F V D+S +GLGA L + + VIA+A Sbjct: 572 GRNEQEAFDRVKDLFLEAVLLRYPDLNKIFYVQTDSSGYGLGAELYQIQEDGSRGVIAFA 631 Query: 1443 SRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQR 1622 SR L+ E NY T + EL V+FAL +++ Y+ K + TDH++L+++ + L+ R Sbjct: 632 SRSLRGPELNYTTTEKELLGVIFALHKFRIYIQVTKIIIRTDHQALKFLSRCRLLSERLT 691 Query: 1623 RWMELLKDYDITI 1661 RW +L YD I Sbjct: 692 RWTLILGQYDYEI 704 >gb|AAD04177.1| (AF110183) putative integrase [Oryza sativa] Length = 218 Score = 209 bits (527), Expect(2) = 5e-052 Identities = 92/154 (59%), Positives = 119/154 (76%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S HPG+TKMY+D+K +FWW+ MKRD+ E+VA C CQ+VK EHQ P G LQ +PIP++KW Sbjct: 61 SIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLPIPEWKW 120 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 E+I MDF+ G P+T +YDSIWVIVDRLTKSAHF+PVK T++ +K A+LY++ V+ G Sbjct: 121 EEIGMDFITGLPRTPSRYDSIWVIVDRLTKSAHFVPVKTTFDGKKLAELYMTHVVCRFGC 180 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEF 2515 P I+SDR T+FTS FWK LHE LGT ++ T F Sbjct: 181 PKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAF 214 Score = 23.1 bits (48), Expect(2) = 5e-052 Identities = 10/37 (27%), Positives = 16/37 (43%) Frame = +3 Query: 1950 IDEGGVL*VKGGVCIPRVDDITKTILTEVHSFKVCLH 2060 ID G + +C+P ++ IL E H +H Sbjct: 27 IDNQGTVWCGPRICVPAKKELRDLILKEAHQSAYSIH 63 >dbj|BAA24352.1| (AB000279) Pol-like peptide [Alternaria alternata] Length = 551 Score = 206 bits (520), Expect = 9e-051 Identities = 129/398 (32%), Positives = 219/398 (54%), Gaps = 17/398 (4%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKK-----KDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 +GF +PS S +PV FV+ + G R+ IDY+ LN V ++YP+P L + L Sbjct: 19 RGFIKPSKSESSAPVFFVRDPTTGGRSGQLRLVIDYRDLNSKIVLDEYPIPLSRTLMNDL 78 Query: 720 QGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGI 899 GA + +D SG+ L++ TAF T + +E+ +M GL AP+ F +N + Sbjct: 79 AGADWITAMDVRSGFANLRMAPGSEKATAFKTFFGSFEYTIMPMGLATAPSVFQRFINSV 138 Query: 900 LKPYLDLFVILFIDDILVYSK-SNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFL 1076 L PYL +F ++DD+++++K S +H+ H+R++LE L++ L K KC+++ +FL Sbjct: 139 LNPYLGIFCHAYLDDVVIFTKGSLDQHKEHVRLILEALQDNGLRLKPHKCKWFTKECNFL 198 Query: 1077 G-HVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLT 1253 G +VV + + KI+ +++ P +T +RSF+G+ +Y +F+ +S + LT+LT Sbjct: 199 GFNVVCGKGIRMAEDKIQGIRNLPPPRGLTDLRSFLGMVGFYDKFIPHYSDTTACLTDLT 258 Query: 1254 KQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK--- 1424 K+ P W+ + + +F ++ + + + GK + D+S L +E Sbjct: 259 KKDKPWEWTSKHQAAFDRILSHIRDDIYIRAFQPGKPVRLSTDSSDEAYAGILEQEYDDG 318 Query: 1425 -NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYL--YGVKCEVYTDHRSL-QYVF 1592 + + E+N+ HD EL A+V A Q++HYL G +V+TDHR+L +++F Sbjct: 319 WHPFLLFHHKFHAAEKNWDIHDKELYAIVHAFSQYRHYLAQTGHVVQVFTDHRNLAKFMF 378 Query: 1593 TQKYLNL---RQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQV 1748 + L R RW E L + I Y P K NV+ D LSR S A ++V Sbjct: 379 STNLLKSHDGRLGRWWETLSQCNFQIQYLPGKENVIPDFLSRSGYDASSEAPARV 433 >dbj|BAB08213.2| (AP002539) Similar to Arabidopsis thaliana chromosome II BAC F26H6; putative retroelement pol polyprotein (AC006920) [Oryza sativa] Length = 2876 Score = 206 bits (519), Expect = 1e-050 Identities = 130/436 (29%), Positives = 213/436 (48%), Gaps = 8/436 (1%) Frame = +3 Query: 375 SIVREFLDVFPTDLPGMP--PDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXX 548 S + EF D F MP R + ++P RP+ P + P Sbjct: 1808 SFLMEFRDCFAWTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAEVDRL 1867 Query: 549 XSKGFTRPSASP-WGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQG 725 + GF + P W + ++ V+KK+G R+C+D++ LN+ K+ +PLP + + D G Sbjct: 1868 INVGFIKEIQYPRWLANIVPVEKKNGQVRVCVDFRDLNRACPKDDFPLPITEMVVDSTTG 1927 Query: 726 ACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILK 905 S GY+Q+K+ D TAF T ++ + VM FGL NA A + M +L Sbjct: 1928 YGALS------GYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQRAMQFVLD 1981 Query: 906 PYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHV 1085 + V ++DD++V +K ++ H+ LRIV E LR +L KC F + FLG V Sbjct: 1982 DLIHHSVECYVDDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVFLGFV 2041 Query: 1086 VSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSV 1265 + + ++P KI+ + + P + +R G +Y RRF+ S + L K+ Sbjct: 2042 IRHRGIEIEPKKIKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLMKKGT 2101 Query: 1266 PSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKN-----V 1430 P VW +EC+ F + L P+L PV+G+ I+Y +GA L + + Sbjct: 2102 PFVWDEECQNGFDSIKRYLLNPPVLAAPVKGRPLILYIATQPASIGALLAQHNDEGKEVA 2161 Query: 1431 IAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLN 1610 Y SR + E+NY + A++FALK+ +HY+ + ++ ++YV +Q L Sbjct: 2162 CYYLSRTMVGAEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRYVLSQPVLT 2221 Query: 1611 LRQRRWMELLKDYDITILYHPEKA 1682 R +W L+ +YDIT + P+KA Sbjct: 2222 GRLGKWALLMMEYDITFV--PQKA 2243 Score = 73.0 bits (176), Expect = 2e-010 Identities = 74/326 (22%), Positives = 141/326 (42%), Gaps = 16/326 (4%) Frame = +2 Query: 2060 HPGATKMYRDLKQ-HFWWSRMKRDIVEFVAQCPNCQ-KVKYEHQMPGGALQRMPIPKFKW 2233 H KMY ++ ++W + D ++ C CQ ++HQ P A +P + + Sbjct: 2531 HQSGPKMYHSIRLVGYYWPGIMADCLKTAKTCHGCQIHDNFKHQPP--APLHPTVPSWPF 2588 Query: 2234 EKIAMDFVVGF--PKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLH 2407 + +D V+G P + + I D +K A +P++ +++ +I Sbjct: 2589 DAWGID-VIGLINPPSSRGHRFILTATDYFSKWAEAVPLREVKSSDV-INFLERHIIYRF 2646 Query: 2408 GVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVV 2587 GVP I SD F S E+ + + T ++P +G +E + L +L+ V Sbjct: 2647 GVPHRITSDNAKAFKSQKIYRFMEKYKIKWNYSTGYYPQANGMAEAFNKTLGKILKKTVD 2706 Query: 2588 EFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIE-----WFDAFEVRPWGT 2752 + W L A ++Y + ++ P+ +YG P+E A Sbjct: 2707 KHRRDWHDRLYEALWAYRVTVRTPTQATPYSLVYGNEAVLPLEIQLPSLRVAIHDELTKD 2766 Query: 2753 DLLRESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFE-------FMEGEQVLLKVSPMKGV 2911 + +R ++ ++E+ L A + Y VR ++ F +GE VL+ P+ V Sbjct: 2767 EQIRLRFQELDAVEEERLGALQNLELYRQNMVRAYDKLVKQRVFRKGELVLVLRRPI--V 2824 Query: 2912 MWFGKRGKLSPRYIGPFKVLKRVGEVAYELALPPGLSGVHPV 3037 + +GK P++ GP+ + + AY+L G + P+ Sbjct: 2825 VTHKMKGKFEPKWEGPYVIEQAYDGGAYQLIDHQGSQPMPPI 2866 >dbj|BAA96774.2| (AP002521) Similar to Arabidopsis thaliana chromosome II BAC F26H6; putative retroelement pol polyprotein (AC006920) [Oryza sativa] Length = 2876 Score = 206 bits (519), Expect = 1e-050 Identities = 130/436 (29%), Positives = 213/436 (48%), Gaps = 8/436 (1%) Frame = +3 Query: 375 SIVREFLDVFPTDLPGMP--PDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXX 548 S + EF D F MP R + ++P RP+ P + P Sbjct: 1808 SFLMEFRDCFAWTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAEVDRL 1867 Query: 549 XSKGFTRPSASP-WGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQG 725 + GF + P W + ++ V+KK+G R+C+D++ LN+ K+ +PLP + + D G Sbjct: 1868 INVGFIKEIQYPRWLANIVPVEKKNGQVRVCVDFRDLNRACPKDDFPLPITEMVVDSTTG 1927 Query: 726 ACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILK 905 S GY+Q+K+ D TAF T ++ + VM FGL NA A + M +L Sbjct: 1928 YGALS------GYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQRAMQFVLD 1981 Query: 906 PYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHV 1085 + V ++DD++V +K ++ H+ LRIV E LR +L KC F + FLG V Sbjct: 1982 DLIHHSVECYVDDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVFLGFV 2041 Query: 1086 VSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSV 1265 + + ++P KI+ + + P + +R G +Y RRF+ S + L K+ Sbjct: 2042 IRHRGIEIEPKKIKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLMKKGT 2101 Query: 1266 PSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKN-----V 1430 P VW +EC+ F + L P+L PV+G+ I+Y +GA L + + Sbjct: 2102 PFVWDEECQNGFDSIKRYLLNPPVLAAPVKGRPLILYIATQPASIGALLAQHNDEGKEVA 2161 Query: 1431 IAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLN 1610 Y SR + E+NY + A++FALK+ +HY+ + ++ ++YV +Q L Sbjct: 2162 CYYLSRTMVGAEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRYVLSQPVLT 2221 Query: 1611 LRQRRWMELLKDYDITILYHPEKA 1682 R +W L+ +YDIT + P+KA Sbjct: 2222 GRLGKWALLMMEYDITFV--PQKA 2243 Score = 73.0 bits (176), Expect = 2e-010 Identities = 74/326 (22%), Positives = 141/326 (42%), Gaps = 16/326 (4%) Frame = +2 Query: 2060 HPGATKMYRDLKQ-HFWWSRMKRDIVEFVAQCPNCQ-KVKYEHQMPGGALQRMPIPKFKW 2233 H KMY ++ ++W + D ++ C CQ ++HQ P A +P + + Sbjct: 2531 HQSGPKMYHSIRLVGYYWPGIMADCLKTAKTCHGCQIHDNFKHQPP--APLHPTVPSWPF 2588 Query: 2234 EKIAMDFVVGF--PKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLH 2407 + +D V+G P + + I D +K A +P++ +++ +I Sbjct: 2589 DAWGID-VIGLINPPSSRGHRFILTATDYFSKWAEAVPLREVKSSDV-INFLERHIIYRF 2646 Query: 2408 GVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVV 2587 GVP I SD F S E+ + + T ++P +G +E + L +L+ V Sbjct: 2647 GVPHRITSDNAKAFKSQKIYRFMEKYKIKWNYSTGYYPQANGMAEAFNKTLGKILKKTVD 2706 Query: 2588 EFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIE-----WFDAFEVRPWGT 2752 + W L A ++Y + ++ P+ +YG P+E A Sbjct: 2707 KHRRDWHDRLYEALWAYRVTVRTPTQATPYSLVYGNEAVLPLEIQLPSLRVAIHDELTKD 2766 Query: 2753 DLLRESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFE-------FMEGEQVLLKVSPMKGV 2911 + +R ++ ++E+ L A + Y VR ++ F +GE VL+ P+ V Sbjct: 2767 EQIRLRFQELDAVEEERLGALQNLELYRQNMVRAYDKLVKQRVFRKGELVLVLRRPI--V 2824 Query: 2912 MWFGKRGKLSPRYIGPFKVLKRVGEVAYELALPPGLSGVHPV 3037 + +GK P++ GP+ + + AY+L G + P+ Sbjct: 2825 VTHKMKGKFEPKWEGPYVIEQAYDGGAYQLIDHQGSQPMPPI 2866 >dbj|BAB02140.1| (AP000411) contains similarity to reverse transcriptase~gene_id:K11J14.5 [Arabidopsis thaliana] Length = 904 Score = 203 bits (510), Expect = 1e-049 Identities = 121/321 (37%), Positives = 165/321 (50%), Gaps = 2/321 (0%) Frame = +3 Query: 378 IVREFLDVF--PTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXX 551 +V FLD+F PT+LP P D I L G P++ Y Sbjct: 412 VVAAFLDIFEEPTELP--PFRAQHDHKIKLLEGYNPVTQRPYRYVVQQKNETDKMVEDLL 469 Query: 552 SKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGAC 731 G S+SP+ SPV+ VKKK G++R+C++Y++LN + +K+++P+P I++L D+L GA Sbjct: 470 LSGTVLNSSSPYASPVVLVKKKHGTWRLCVNYRELNGMTMKDRFPIPLIEDLMDELGGAV 529 Query: 732 TFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPY 911 FSKID +GYHQ+++ D+ K F T HYE+LVM FGLTNAPA F LMN I KP+ Sbjct: 530 VFSKIDLRAGYHQVRMATEDIHKPTFKTHSGHYEYLVMPFGLTNAPATFQGLMNAIFKPF 589 Query: 912 LDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 L FV+ F DDIL+YS S +EH HL+ V EM Sbjct: 590 LRKFVLFFFDDILIYSSSMEEHVQHLQQVFEM---------------------------- 621 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 +P N V+S GLA YYRRFV+ F +A+ L LTK + Sbjct: 622 -----------------AKPNNTQTVKSICGLAGYYRRFVRSFGVIAAHLHMLTKIN-SF 663 Query: 1272 VWSDECEESFQKLNTLLTTAPIL 1340 WS+E E+F T T I+ Sbjct: 664 EWSEEAHEAFDGYTTNDTLKTII 686 Score = 58.2 bits (138), Expect = 5e-006 Identities = 31/89 (34%), Positives = 46/89 (50%) Frame = +2 Query: 2150 CPNCQKVKYEHQMPGGALQRMPIPKFKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSA 2329 C CQ+ K + G LQ + IP W ++MDF+ G P + GK I V+VD +K+ Sbjct: 750 CGTCQQCKSDTAAYPGLLQPLLIPDSIWSDVSMDFIDGLPMSNGK-TVIRVVVDHFSKAV 808 Query: 2330 HFIPVKVTYNAEK*AKLYISEVIRLHGVP 2416 HF+ + Y+ A Y+ V +LH P Sbjct: 809 HFMALSHPYSPLTLAHAYLDNVFKLHECP 837 >gb|AAF00146.1|AF149813_2 (AF149813) retrotransposon del1-46 homolog [Oryza sativa] Length = 200 Score = 199 bits (502), Expect = 1e-048 Identities = 109/222 (49%), Positives = 136/222 (61%) Frame = +3 Query: 150 MTWLSPNFAILDCNAKTVTLAKPGTYPLVWEGDYTSTPVHIIYFLRAKKMVSKGCLAFLA 329 M WL+ + +DC K++TL PG + + +TP S+ L L Sbjct: 1 MDWLAKHKGQIDCAEKSITLQGPGGKQVRFT---PNTPT-----------ASRSILTCL- 45 Query: 330 HLIDDTTQIPSIESVSIVREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAP 509 Q+ S+ESV IV E+ DVFP +L MPPDR+I+F I+L PGT PI+ Y MA Sbjct: 46 -------QVTSLESVPIVCEYPDVFPEELTRMPPDREIEFAIELAPGTAPIAKRPYRMAA 98 Query: 510 TXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPL 689 SKG+ RP +SPWG+PVL VKKKDGS RM IDY+ LN+V +KNKYPL Sbjct: 99 NELAEVKRQIEELESKGYVRPXSSPWGAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPL 158 Query: 690 PHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWT 815 P ID+LFDQL+GA FSKID SGYHQLKIR+ D+PKTAF T Sbjct: 159 PRIDDLFDQLKGARVFSKIDLRSGYHQLKIRSEDIPKTAFST 200 >gb|AAD17351.1| (AF128395) contains similarity to retrovirus-related polyproteins and to CCHC zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051, E= 1) [Arabidopsis thaliana] Length = 1138 Score = 198 bits (499), Expect = 3e-048 Identities = 121/320 (37%), Positives = 167/320 (51%) Frame = +2 Query: 2048 GLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKF 2227 GL H G +K + ++ HF W MKRD+ +C C++ K + Q P G +PIP Sbjct: 770 GLMGHFGVSKTLKVMQDHFHWPHMKRDVERMCERCTTCKQAKAKSQ-PHGLCTPLPIPLH 828 Query: 2228 KWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLH 2407 W I+MDFVVG P+T DSI+V+VDR +K AHFIP T +A A L+ EV+RLH Sbjct: 829 PWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIANLFFREVVRLH 888 Query: 2408 GVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVV 2587 G+P I+SDR TKF S FWKTL +LGT++ T HP TDGQ+E + L +LRA + Sbjct: 889 GMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIK 948 Query: 2588 EFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRE 2767 + W+ LP EF+YN+S S+ +PF+ +YG +P+ DL+ Sbjct: 949 KNLKTWEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPL-------------DLMPL 995 Query: 2768 SLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPR 2947 L + HL RK+++ P K ++ KL PR Sbjct: 996 PLISI------HL----RKERF---------------------PNK------RKSKLMPR 1018 Query: 2948 YIGPFKVLKRVGEVAYELAL 3007 G FKVLKR+ + AY L L Sbjct: 1019 MDGSFKVLKRINDNAYSLDL 1038 Score = 182 bits (458), Expect = 2e-043 Identities = 96/210 (45%), Positives = 135/210 (63%) Frame = +3 Query: 1083 VVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQS 1262 V S D V VD K++ ++ W P +V VRSF GLA +YRRFV+ FS++A+ LT + K++ Sbjct: 531 VASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIKKN 590 Query: 1263 VPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYA 1442 V W E++FQ L LT AP+L+LP K F + CDA G+GA LM++K IAY Sbjct: 591 VGFKWEQAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDAPGVGIGAVLMQDKKPIAYF 650 Query: 1443 SRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQR 1622 S +L NYPT+D EL A+V AL+ W+HYL+ + ++TDH SL+++ Q+ LN R Sbjct: 651 SEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHA 710 Query: 1623 RWMELLKDYDITILYHPEKANVVADALSRK 1712 RW+E ++ + I Y K NVVADALSR+ Sbjct: 711 RWVEFIETFPYVIKYKKGKDNVVADALSRR 740 Score = 55.8 bits (132), Expect = 3e-005 Identities = 48/162 (29%), Positives = 67/162 (40%), Gaps = 8/162 (4%) Frame = +3 Query: 384 REFLDVFPTDLP-GMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKG 560 +++ DVFP + P G+PP R I+ ID PG + P+Y P +G Sbjct: 446 KDYQDVFPEENPEGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVNELMERG 505 Query: 561 FTRPSASPWGSPVLFVKKKDGSFRMCIDYKQL----NKVNVKNKYPLPHIDNLFDQLQGA 728 S SP PVL V KKDGS+R + KV ++P P G Sbjct: 506 HICESMSPCAVPVLLVPKKDGSWRFVASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGL 565 Query: 729 CTFSKIDFSSGYHQLKIRATDVPKTAF---WTRYRHYEFLVMSFGLTNAP 869 F + F + L T+V K W + F + LT+AP Sbjct: 566 AGFYR-RFVRDFSTLAAPLTEVIKKNVGFKWEQAPEDAFQALKEKLTHAP 614 >emb|CAB77944.1| (AL161508) putative polyprotein [Arabidopsis thaliana] Length = 1138 Score = 198 bits (499), Expect = 3e-048 Identities = 121/320 (37%), Positives = 167/320 (51%) Frame = +2 Query: 2048 GLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKF 2227 GL H G +K + ++ HF W MKRD+ +C C++ K + Q P G +PIP Sbjct: 770 GLMGHFGVSKTLKVMQDHFHWPHMKRDVERMCERCTTCKQAKAKSQ-PHGLCTPLPIPLH 828 Query: 2228 KWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLH 2407 W I+MDFVVG P+T DSI+V+VDR +K AHFIP T +A A L+ EV+RLH Sbjct: 829 PWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIANLFFREVVRLH 888 Query: 2408 GVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVV 2587 G+P I+SDR TKF S FWKTL +LGT++ T HP TDGQ+E + L +LRA + Sbjct: 889 GMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIK 948 Query: 2588 EFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRE 2767 + W+ LP EF+YN+S S+ +PF+ +YG +P+ DL+ Sbjct: 949 KNLKTWEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPL-------------DLMPL 995 Query: 2768 SLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPR 2947 L + HL RK+++ P K ++ KL PR Sbjct: 996 PLISI------HL----RKERF---------------------PNK------RKSKLMPR 1018 Query: 2948 YIGPFKVLKRVGEVAYELAL 3007 G FKVLKR+ + AY L L Sbjct: 1019 MDGSFKVLKRINDNAYSLDL 1038 Score = 182 bits (458), Expect = 2e-043 Identities = 96/210 (45%), Positives = 135/210 (63%) Frame = +3 Query: 1083 VVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQS 1262 V S D V VD K++ ++ W P +V VRSF GLA +YRRFV+ FS++A+ LT + K++ Sbjct: 531 VASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIKKN 590 Query: 1263 VPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYA 1442 V W E++FQ L LT AP+L+LP K F + CDA G+GA LM++K IAY Sbjct: 591 VGFKWEQAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDAPGVGIGAVLMQDKKPIAYF 650 Query: 1443 SRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQR 1622 S +L NYPT+D EL A+V AL+ W+HYL+ + ++TDH SL+++ Q+ LN R Sbjct: 651 SEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHA 710 Query: 1623 RWMELLKDYDITILYHPEKANVVADALSRK 1712 RW+E ++ + I Y K NVVADALSR+ Sbjct: 711 RWVEFIETFPYVIKYKKGKDNVVADALSRR 740 Score = 55.8 bits (132), Expect = 3e-005 Identities = 48/162 (29%), Positives = 67/162 (40%), Gaps = 8/162 (4%) Frame = +3 Query: 384 REFLDVFPTDLP-GMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKG 560 +++ DVFP + P G+PP R I+ ID PG + P+Y P +G Sbjct: 446 KDYQDVFPEENPEGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVNELMERG 505 Query: 561 FTRPSASPWGSPVLFVKKKDGSFRMCIDYKQL----NKVNVKNKYPLPHIDNLFDQLQGA 728 S SP PVL V KKDGS+R + KV ++P P G Sbjct: 506 HICESMSPCAVPVLLVPKKDGSWRFVASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGL 565 Query: 729 CTFSKIDFSSGYHQLKIRATDVPKTAF---WTRYRHYEFLVMSFGLTNAP 869 F + F + L T+V K W + F + LT+AP Sbjct: 566 AGFYR-RFVRDFSTLAAPLTEVIKKNVGFKWEQAPEDAFQALKEKLTHAP 614 >gb|AAF79809.1|AC020646_32 (AC020646) T32E20.9 [Arabidopsis thaliana] Length = 1586 Score = 196 bits (493), Expect = 1e-047 Identities = 154/535 (28%), Positives = 249/535 (45%), Gaps = 24/535 (4%) Frame = +3 Query: 60 YRSCLVTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTYPLVW 239 Y+ C ++ + ++ + + + D V+ G+ + +F +L+ + + PL+ Sbjct: 672 YKPCNISLILADRSVRISHGLLEDLPVMIGVVEVPTDFVVLEMDEEPKD-------PLIL 724 Query: 240 EGDYTSTPVHIIYFLRAKKMVSKGCLAFLAHLIDDTTQIPSIESVSIVREFLDVFPT--- 410 + + II + K ++ G + I +T + P+IE E +D+ Sbjct: 725 GRPFLARARAIIDVKKGKIDLNLGRDLKMTFDITNTMKKPTIEGNIFWIEEMDMKAIGYS 784 Query: 411 --DLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRP-SAS 581 D+ G+ P I LE + P + P G P S S Sbjct: 785 LDDIKGISPTL-CTHRIHLENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDS 843 Query: 582 PWGSPVLFVKKKDG------------------SFRMCIDYKQLNKVNVKNKYPLPHIDNL 707 W SPV V KK G RMCI+Y++LN + K +PLP ID++ Sbjct: 844 TWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLPFIDHM 903 Query: 708 FDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSL 887 ++L + +D SG+ Q+ I D KT F Y + + M FGL NAPA F Sbjct: 904 LERLANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPATFQRC 963 Query: 888 MNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*V 1067 M I ++ V +F+DD VY S +L VL+ E L + KC F + Sbjct: 964 MTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEKCHFMVREG 1023 Query: 1068 SFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTN 1247 LG +S++ + VD KI+V+ + P V +RSF+G A +YR F+K FS +A LT Sbjct: 1024 IVLGRKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSFLGHAGFYRIFIKDFSKLARPLTR 1083 Query: 1248 LTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKN 1427 L + + DEC +F+ + L TAPI+ P F Sbjct: 1084 LLCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPF-------------------E 1124 Query: 1428 VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYL 1607 +I Q++ Y T + EL AVVFA ++++ YL G K +YTDH +L++++ +K Sbjct: 1125 IITMDDAQVR-----YATTEKELLAVVFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDT 1179 Query: 1608 NLRQRRWMELLKDYDITIL 1664 R RW+ LL+++D+ I+ Sbjct: 1180 KPRLLRWILLLQEFDMEIV 1198 Score = 57.4 bits (136), Expect = 9e-006 Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 17/241 (7%) Frame = +2 Query: 2246 MDFVVGFPKTIG-KYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLP 2422 +DF+ FP + G KY I V +D ++K I T +A KL+ + + GVP Sbjct: 1305 IDFMGPFPSSYGNKY--ILVAIDYVSKWVEAI-ASHTNDARVVLKLFKTIIFPRFGVPRI 1361 Query: 2423 IISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGH 2602 +ISD F + ++ L ++ G + H S R I+ + L V Sbjct: 1362 VISDGGKHFINKGFENLLKKHGVK---------HKVEISNREIKAI---LEKTVGSTRKD 1409 Query: 2603 WDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRP-WGTDLLR----- 2764 W + L ++Y ++++ I PF LYG+ C P+E E + W LL Sbjct: 1410 WSAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVE----LEYKAMWAVKLLNFDIKT 1465 Query: 2765 ---------ESLDKVKC-IQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVM 2914 L+K++ E + R K + +K+ +F G+QVLL S ++ Sbjct: 1466 AEEKRLIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQVLLFNSRLRLF- 1524 Query: 2915 WFGKRGKLSPRYIGPFKV 2968 GKL R+ GPF V Sbjct: 1525 ----PGKLKSRWSGPFSV 1538 >gb|AAG12922.1|AC022456_7 (AC022456) polyprotein, putative; 77260-80472 [Arabidopsis thaliana] Length = 884 Score = 193 bits (486), Expect = 9e-047 Identities = 132/354 (37%), Positives = 185/354 (51%), Gaps = 9/354 (2%) Frame = +3 Query: 648 KQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRH 827 K+LN KN +PL ID L ++L + +D SG+ Q+ I D KT F Y Sbjct: 515 KKLNAATRKNHFPLQFIDQLLERLSNHKYYCVLDGYSGFFQIPIHPDDQEKTMFTCPYGT 574 Query: 828 YEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEM 1007 + + M FGL NAPA F M I ++ F+ +F+DD VY S + +LR VL Sbjct: 575 FAYSRMPFGLCNAPAIFERCMMSIFTDMIENFIEVFMDDFSVYGSSFEACLENLRKVLAR 634 Query: 1008 LREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGL 1187 EK L + KC F + LGH VS + V+ KIEV+ S + L Sbjct: 635 CEEKNLVLNWEKCHFMVQEGIVLGHKVSGAGIEVNKAKIEVMTSLQ------------AL 682 Query: 1188 ASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPIL-----NLPV 1352 S RFVK FS +A LT L + V ++ EC ++F ++ L +API+ NLP Sbjct: 683 DSVNLRFVKDFSKIARPLTALLCKDVKFDFNSECHDAFNQIKNALVSAPIVQPLDWNLPF 742 Query: 1353 EGKNFIVYCDASYWGLGAALMKEK----NVIAYASRQLKVHERNYPTHDLELAAVVFALK 1520 E + CDA + +GA L + K + I YASR L +RN T + EL AVVFA Sbjct: 743 E-----IMCDAGDYAVGAVLGQRKGNKLHAIHYASRTLDDAQRNNATTEKELLAVVFAFD 797 Query: 1521 QWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANVVADA 1700 +++ YL G K V+TDH +L+Y+ +K R RW+ LL+++DI + N VAD Sbjct: 798 KFRSYLVGSKVIVHTDHSALKYLMQKKDAKPRLLRWILLLQEFDIEVRDRKGIENGVADH 857 Query: 1701 LSR 1709 LSR Sbjct: 858 LSR 860 >dbj|BAA92707.1| (AB036889) reverse transcriptase [Tricholoma fulvocastaneum] Length = 315 Score = 192 bits (483), Expect = 2e-046 Identities = 114/318 (35%), Positives = 183/318 (56%), Gaps = 5/318 (1%) Frame = +3 Query: 675 NKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFG 854 N+YPLP I L +QLQGA F K+D GY+ + ++ D K F ++ LVM FG Sbjct: 1 NRYPLPLILELVNQLQGAKYFMKLDVCWGYNNVWMKEGDKWKPVFHVNCGFFKPLVMFFG 60 Query: 855 LTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAK 1034 L N+P+ F ++MN I + + + ++++DIL+++KS +EH + +VL+ L E KL+ + Sbjct: 61 LMNSPSTFQTMMNEIFQDLIGRVICVYLNDILIFTKSLEEHWHIIELVLKWLWEHKLFLQ 120 Query: 1035 FSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVK 1214 KC+F + +LG ++SK + +DP K+ V W PT V+SF+G ++Y+ F++ Sbjct: 121 HDKCKFKATMIKYLGLIISKGEIHMDPVKVAGVMEWPAPTTRREVQSFLGFVNFYQCFIE 180 Query: 1215 GFSSVASQLTNLTKQSVPSVWS-DECEE-SFQKLNTLLTTAPILNLPVEGKNFIVYCDAS 1388 GFS A L+ L K+ WS E E+ +F ++ T +T + IL K F + D+S Sbjct: 181 GFSQHAKPLSELMKKD--QKWSRGEMEQVAFNEIKTQVTLSSILCFTDNSKAFHIEADSS 238 Query: 1389 YWGLGAALMKEKNVIAYASRQLKVHE-RNYPTHDLELAAVVFALKQWKHYLYGV--KCEV 1559 + G L ++ +S LK H HD E+ AV+ AL++W+H+L G K E+ Sbjct: 239 DFATGMVLSQQ------SSDDLKWHSIILLKIHDKEMLAVMRALEEWRHFLEGAKHKVEI 292 Query: 1560 YTDHRSLQYVFTQKYLNLRQRRW 1628 + H++L+Y T K LN RQ W Sbjct: 293 WMVHKNLEYFMTMKKLNCRQAHW 315 >emb|CAA81643.1| (Z27119) blastopia polyprotein [Drosophila melanogaster] Length = 1333 Score = 187 bits (470), Expect = 6e-045 Identities = 113/385 (29%), Positives = 205/385 (52%), Gaps = 5/385 (1%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 + R S S S ++ V+KKDG+ R+C+DY++LN + + + +P+P ++ + ++LQ A Sbjct: 514 QSIVRKSTSNVASRIVVVRKKDGTLRVCVDYRKLNTMVLMDCFPVPIMEEVLEKLQSAKW 573 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 F+ +D +G+ + + P TAF TR +EF FG N+PAAF+ + I + + Sbjct: 574 FTTMDLQNGFFHVAVEEASKPYTAFVTREGLFEFNKAPFGFKNSPAAFIRFVQFIFQELI 633 Query: 915 DLFVI-LFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 + ++ L++DDI+VY+ + +E +VL+ E L K+ KC F + FLGH++ Sbjct: 634 NSNIMQLYMDDIIVYAATPEECMEKTEMVLKRAAEFGLKIKWKKCNFMQRRIHFLGHIIE 693 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + K V S+ P NV V+ F+GL ++R+F+ G++ +A LT+L K+ Sbjct: 694 GGQICPGKEKTSAVNSFGTPQNVKAVQGFLGLTGFFRKFIPGYAQIARPLTDLLKKDAIF 753 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE----KNVIAY 1439 ++S KL +L P+L + ++ DAS GLGA L+++ + + + Sbjct: 754 NIGPVEQQSVNKLKEILVNEPVLRIYSREAETELHTDASKDGLGAVLLQKFEGSFHPVCF 813 Query: 1440 ASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQ 1619 SR+ E N ++ LE+ A ALK+++HYL GV ++ TD + + + + Sbjct: 814 WSRKTTKAESNRHSYYLEVKAAYLALKKFRHYLLGVPFKLVTDCVAFKQTTKKADVPREV 873 Query: 1620 RRWMELLKDYDITILYHPEKANVVADALSR 1709 W+ ++D++ + + D LSR Sbjct: 874 GPWILYMQDFNFQPEHRAGERMRHVDFLSR 903 Score = 52.3 bits (123), Expect = 3e-004 Identities = 55/297 (18%), Positives = 125/297 (41%), Gaps = 2/297 (0%) Frame = +2 Query: 2078 MYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEKIAMDFV 2257 M+ +Q F++ + + + ++ C C + G L + + +D + Sbjct: 987 MHSIQQQFFYFLIWEYKVKKLISNCIKCIIHSKKLGKQEGYLNCIDKGDAPLHTLHIDHL 1046 Query: 2258 VGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDR 2437 + +Y I VD +K P K T E +L ++ + G P I+SD+ Sbjct: 1047 GPMDSSAKQYKYILATVDAFSKFVWLFPTKSTGQEEVVKRL--TDWSNIFGFPKRIVSDK 1104 Query: 2438 CTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFL 2617 T FTS ++ T +GQ ER +++ ++ + W ++ Sbjct: 1105 GTAFTSGAFEQFMSSHNVEHVCTTTGVARGNGQIERVNRLILAIISKLSSDEPSKWYKYV 1164 Query: 2618 PLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKCIQE 2797 P + + N SS+ ++PFE ++G + + +E ++ E +++ + + Sbjct: 1165 PEVQKAINCHVHSSLKLSPFEVMFGTKMYTRVEDRLLELLQEEVVCQFNEDRYEMRQLVK 1224 Query: 2798 KHL--AAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKV 2968 +++ A + K+ Y ++ ++++ G+ V +K + F K++ Y+GP++V Sbjct: 1225 RNIEQAQKDYKRNYDKKRRAEYKYKAGDLVAIKRTQ------FVAGRKMASGYLGPYEV 1277 >gb|AAF79618.1|AC027665_19 (AC027665) F5M15.26 [Arabidopsis thaliana] Length = 1838 Score = 185 bits (464), Expect = 3e-044 Identities = 121/373 (32%), Positives = 184/373 (48%), Gaps = 5/373 (1%) Frame = +3 Query: 585 WGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGY 764 W + + VKKK+G +R+C+DY LNK K+ YPLPHID L + G S +D SGY Sbjct: 861 WLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGY 920 Query: 765 HQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDD 944 +Q+ + D KT+F T Y + VMSFGL NA A + +N +L + V ++IDD Sbjct: 921 NQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDD 980 Query: 945 ILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKI 1124 +LV S ++H HL ++L + +KC F + FLG+VV+K + +P +I Sbjct: 981 MLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQI 1040 Query: 1125 EVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQ 1304 + P N V+ G + RF+ + NL K+ W + EE+F+ Sbjct: 1041 RAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFE 1100 Query: 1305 KLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK----EKNVIAYASRQLKVHERN 1472 KL L+T PIL P G+ +Y S + + L++ E+ I Y S+ L E Sbjct: 1101 KLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKSLVEAETR 1160 Query: 1473 YPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYD 1652 YP + AVV + ++ + Y V TD + L+ + R +W L +YD Sbjct: 1161 YPVIEKAALAVVTSARKLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSEYD 1219 Query: 1653 ITILYHPE-KANVVADAL 1703 I P K+ V+AD L Sbjct: 1220 IDFRPRPAMKSQVLADFL 1237 Score = 83.1 bits (202), Expect = 2e-013 Identities = 93/319 (29%), Positives = 136/319 (42%), Gaps = 23/319 (7%) Frame = +2 Query: 2060 HPGATKMYRDLKQ-HFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQR--MPIPKFK 2230 H G + LK+ F+W M D F A+C CQ+ P L+ P P + Sbjct: 1497 HSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMR 1556 Query: 2231 WEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHG 2410 W AMD V P + K I V+ D TK T A +I HG Sbjct: 1557 W---AMDIVGPMPASRQKR-FILVMTDYFTKWVE-AESYATIRANDVQNFVWKFIICRHG 1611 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 +P II+D ++F S+ ++ R++ T +P +GQ+E T + + L+ + E Sbjct: 1612 LPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDE 1671 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRES 2770 G W L +SY + +S+ D PF YG +P E G LR S Sbjct: 1672 KKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAE---------VGYSSLRRS 1722 Query: 2771 -------------LDKVKCIQEKHLAAQSRKKKYVV-------QKVRDFEFMEGEQVLLK 2890 LD++ ++E AA R + Y + QKV + F G+ VL K Sbjct: 1723 MMVKNPELNDRMMLDRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRK 1782 Query: 2891 VSPMKGVMWFGKRGKLSPRYIGPFKVLKRVGEVAYELALPPG 3016 V + GKL + G ++V K V YEL G Sbjct: 1783 VFENTAEI---NAGKLGANWEGSYQVSKIVRPGDYELLTMSG 1821 >emb|CAA65970.1| (X97304) ORF V [Strawberry vein banding virus] Length = 708 Score = 183 bits (460), Expect = 1e-043 Identities = 122/385 (31%), Positives = 205/385 (52%), Gaps = 14/385 (3%) Frame = +3 Query: 558 GFTRPSASPWGSPVLFVKK----KDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQG 725 G RPS SP SP V+ K G RM I+YK+LN + Y LP+ + L ++ G Sbjct: 305 GIIRPSKSPHSSPAFMVRNHAEIKRGKARMVINYKKLNDHTKGDGYLLPNKEQLLQRIGG 364 Query: 726 ACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILK 905 +S D SG+ Q+++ + TAF HYE+LVM FGL APA F M+ L Sbjct: 365 KTFYSSFDCKSGFWQVRLAPETIQLTAFSCPQGHYEWLVMPFGLKQAPAIFQRHMDESLS 424 Query: 906 PYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHV 1085 F +++DDI+V+SK+ +EH H++IVL + + K + ++FLG V Sbjct: 425 NMYPQFCAVYVDDIIVFSKTEEEHLGHVKIVLNRCKALGIVLSKKKAQLCKTTINFLGLV 484 Query: 1086 VSKD*VMVDPY-KIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQS 1262 + + + V + + +V ++ ++ ++ F+GL +Y + +++ S L K+ Sbjct: 485 IERGNLKVQSHIGLHLVAFPDQLSDRNALQRFLGLLNYISAYFPKIANLRSPLQVKLKKE 544 Query: 1263 VPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDAS--YWG--LGAALMKEKNV 1430 + W+++ E+ +K+ +L+ T P L P I+ CDAS +WG L A L + K V Sbjct: 545 ITWSWTEKDTETVRKIKSLVKTLPDLYNPSPEDKPIIECDASDDHWGAILKAKLPEGKEV 604 Query: 1431 IA-YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYV----FT 1595 I YAS K E+NY +++ E+ +++ A+K ++ Y+ K V TD+ + Y Sbjct: 605 ICRYASGTFKPAEKNYHSNEKEILSIIKAIKAFRAYILPYKFLVRTDNTNAAYFVRTNIA 664 Query: 1596 QKYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRK 1712 Y R RW L++Y I + + NV+AD ++R+ Sbjct: 665 GDYKQSRLVRWQMALREYSFDIEHVSGQKNVLADIMTRE 703 >emb|CAA39967.1| (X56645) ORF 2 [Drosophila virilis] Length = 1063 Score = 176 bits (442), Expect = 1e-041 Identities = 134/449 (29%), Positives = 215/449 (47%), Gaps = 7/449 (1%) Frame = +3 Query: 342 DTTQIPSIESVSIVREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXX 521 D Q +ESV R FL F D G+ + I L G P+ ++P Sbjct: 273 DNDQRSQLESVK--RRFLQ-FEKD--GLGKTHLLQHRIQLIEGAEPVKDRLNPLSPAKQE 327 Query: 522 XXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHID 701 G S SPW + V + G R C+D ++LN V VK+ YPLP I+ Sbjct: 328 IVWAEVDKMLKLGIIEESDSPWSNRTTVVMRP-GKNRFCLDARKLNSVTVKDAYPLPCIE 386 Query: 702 NLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFM 881 + + SS + TR Y+F M FGL NA F Sbjct: 387 GILSRSTRLILSLASTLSSRSGNRDGGEEQGVYGVYCTRRPLYQFRHMPFGLCNAAQHFE 446 Query: 882 SLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD 1061 + + ++ L V +++DD+L+ S H +L +V E LR L +K +F Sbjct: 447 A-HDKVIPANLRSNVFVYLDDLLIISADFPTHLKYLELVAECLRNANLTIGMAKSKFLFR 505 Query: 1062 *VSFLGHV-VSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQ 1238 +++LG + + + +DP ++E +++ P V +RSF+G A +YRRF+K F+ ++ Sbjct: 506 NLNYLGFIQLRRRTWRMDPGRVEAIRNIPNPRTVKELRSFLGTAGWYRRFIKNFAEISVP 565 Query: 1239 LTN-LTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALM 1415 LT+ L K++ V SDE E+ + L LTTAP+L + F + CDAS++G+GA L Sbjct: 566 LTDALKKRTGRFVLSDEAIEAIESLKLALTTAPVLVHADFRRPFFIQCDASHYGVGAVLF 625 Query: 1416 K-----EKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSL 1580 + ++ IA+ S +L H+ NY + E A A+ +++ Y+ + V TDH SL Sbjct: 626 QLDDEQQERPIAFFSAKLNKHQINYSVTEKECLAAKLAIHRFRPYVEMMPFTVITDHASL 685 Query: 1581 QYVFTQKYLNLRQRRWMELLKDYDITILYHPEKANV 1688 Q++ + K L+ R RW L+ + ++ Y NV Sbjct: 686 QWLMSLKDLSGRLARWSLELQAFPFSMQYRKGADNV 721 Score = 65.6 bits (157), Expect = 3e-008 Identities = 55/223 (24%), Positives = 94/223 (41%), Gaps = 3/223 (1%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVK---YEHQMPGGALQRMPIPK 2224 S H G K L + ++W M + ++V +C C++ K Y Q+ G R P Sbjct: 818 SAHGGMRKTLHALARQYYWPNMAIQVRDYVRKCDTCKETKAQNYRMQVGIGEEVRTDRP- 876 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 ++K+ +DF+ +P++ + I+V+VD +K F+ A + EV Sbjct: 877 --FQKLYIDFLGKYPRSKRGHAWIFVVVDHFSKFT-FLKAMREATAADVVNFLVHEVFFK 933 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 GVP I SD +F S + + + G L T + +ER + + +R + Sbjct: 934 FGVPEVIHSDNGRQFVSKSFDAMVQAFGI-THLRTPVYSPQSNAAERVNRTVLSAIRTYL 992 Query: 2585 VEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWF 2722 + WD++LP E + N+ S L G EWF Sbjct: 993 GQDHREWDAYLPEVEVAIRNAVHSG--YGSHSVLRGLWTADVPEWF 1036 >gb|AAC69378.1| (AC005398) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 945 Score = 176 bits (442), Expect = 1e-041 Identities = 104/300 (34%), Positives = 166/300 (54%), Gaps = 2/300 (0%) Frame = +2 Query: 2372 AKLYISEVIRLHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTI 2551 A ++S V++LHG+P I+SD F S+FW+ + T++ + T +HP TDGQ+E Sbjct: 635 AAKFVSHVVKLHGIPRSIVSDCDPIFMSLFWQEFWKLSRTKLWMSTAYHPQTDGQTEVVN 694 Query: 2552 QVLEDMLRACVVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAF 2731 + +E LR V W SF+P AE+ YN ++ +S M PF+ALYGR SPI ++ Sbjct: 695 RCIEQFLRCFVHYHPKQWSSFIPWAEYWYNTTFHASTGMTPFQALYGRP-PSPIPAYELG 753 Query: 2732 EVRPWGTDLLRESLDKVKCIQEKHL-AAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKG 2908 V + + D++ ++HL A + K+ ++RD F G+ VLL++ P + Sbjct: 754 SVVCGELNEQMAARDELLAELKQHLVTANNCMKQQADSRLRDVSFQVGDWVLLRIQPYRQ 813 Query: 2909 VMWFGKRG-KLSPRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDGNYI 3085 F + KLS R+ GPF+V + GEVAY L LP G + +HPVF+VS+LK + GDG Sbjct: 814 KTLFRRSSQKLSHRFYGPFQVASKHGEVAYRLTLPEG-TRIHPVFHVSLLKPWVGDGEPD 872 Query: 3086 IRWDSVLLDENLSYEEEPVAILDREVPKLRSREIASIKVQWKNRPVEESTWEKEADMQER 3265 + L N + +P A+L+ + +A + VQW+ +E++TWE+ + Sbjct: 873 M-GQLPPLRNNGELKLQPTAVLEVRWRSQDKKRVADLLVQWEGLHIEDATWEEYDQLAAS 931 Query: 3266 YP 3271 +P Sbjct: 932 FP 933 Score = 119 bits (296), Expect = 2e-024 Identities = 91/289 (31%), Positives = 130/289 (44%), Gaps = 9/289 (3%) Frame = +3 Query: 48 CEKVYRSCLVTFVGSNTHIDLVILEMVDFDVIFGMTWLSPNFAILDCNAKTVTLAKPGTY 227 C Y + V G + L L ++ D+ G+ WLS L CN K TL Sbjct: 372 CRSRYEAIPVVMGGVVFPVTLYALPLMGLDLAMGVQWLSTLGPTL-CNWKEQTLQ----- 425 Query: 228 PLVWEGDYTS------TPVHIIYFLRAKKMVSKGCLAF---LAHLIDDTTQIPSIESVSI 380 W GD T + + K G F +AH D P E + Sbjct: 426 -FHWAGDEVRLMGIKPTGLRGVEHKTITKKARMGHTIFAITMAHNSSDPNT-PDGEIKKL 483 Query: 381 VREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKG 560 + EF +F T +P +R I I L+ GT P+++ Y A G Sbjct: 484 IEEFAGLFETPTQ-LPSERPIVHRIALKKGTDPVNVRPYRYA-------FYQKDEMSRAG 535 Query: 561 FTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFS 740 RPS+SP+ SPVL ++P+P +D++ D+L GA F+ Sbjct: 536 IIRPSSSPFLSPVLL-----------------------ERFPIPTVDDMLDELNGAVYFT 572 Query: 741 KIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 K+D ++GY Q+++ + D+PK AF T HYE+LVM FGL NAP+ F +LMN I P L Sbjct: 573 KLDLTAGYQQVRMHSPDIPKIAFQTHNGHYEYLVMPFGLCNAPSTFQALMNEIFWPLL 630 >gb|AAB42240.1| (U88169) similar to retrovirus-related POL polyprotein [Caenorhabditis elegans] Length = 1313 Score = 175 bits (440), Expect = 2e-041 Identities = 117/375 (31%), Positives = 197/375 (52%), Gaps = 13/375 (3%) Frame = +3 Query: 585 WGSPVLFVKKKD-GSFRMCIDYK--QLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFS 755 W +P++ +KKK G R+C D+K LN +PLP +++F +L+G +S+ID Sbjct: 347 WAAPIVVIKKKGTGKIRVCADFKCSGLNAALKDEFHPLPTSEDIFSRLKGT-VYSQIDLK 405 Query: 756 SGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILF 935 Y Q+++ T +++L M+FGL APA+F +M+ ++ V ++ Sbjct: 406 DAYLQVELDEEAQKLAVINTHRGIFKYLRMTFGLKPAPASFQKIMDKMVSGLTG--VAVY 463 Query: 936 IDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDP 1115 +DDI++ + S +EHE LR + E ++E KC F V+FLG +V + DP Sbjct: 464 LDDIIISASSIEEHEKILRELFERIKEYGFRVSAEKCAFAQKQVTFLGFIVDEHGRRPDP 523 Query: 1116 YKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEE 1295 K EV++S + PT+ + SF+G S+Y RFV S + L +L K+ V W+D +E Sbjct: 524 KKTEVIRSMKAPTDQKQLASFLGAVSFYSRFVPKMSKLRGPLDSLMKRDVKWNWTDIHQE 583 Query: 1296 SFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE-----KNVIAYASRQLKV 1460 +F L + + +L+ E I+ DAS +G+G L+ + + +A+ +R L Sbjct: 584 AFNTLKNAVADSTMLSHFNESWPIIIAADASQYGIGGVLLHQTPEGHEVPVAHFARALTD 643 Query: 1461 HERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQK-----YLNLRQRR 1625 E+ Y + E A+V+ +K+ +++G K + TDH+ L +F K + R R Sbjct: 644 TEKRYSQIEKEAVALVYTVKKAHKFIFGRKFLLQTDHKPLLAIFGPKKDLPVHSQNRLVR 703 Query: 1626 WMELLKDYDITILYHPEKANVVADALSR 1709 W L Y+ + Y AD LSR Sbjct: 704 WATTLMTYNFELSYVSTSKIFKADWLSR 731 Score = 74.5 bits (180), Expect = 7e-011 Identities = 61/216 (28%), Positives = 102/216 (46%), Gaps = 6/216 (2%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGA-LQRMPIPKFKWE 2236 HPG +M + + +W + DI + V C NCQ+ +MP L P+P+ W+ Sbjct: 843 HPGIVQMKQKARAFVFWRGLDSDIEKMVRHCNNCQE---NSKMPRVVPLNPWPVPETPWK 899 Query: 2237 KIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKL-YISEVIRLHGV 2413 +I +DF G Y + V+VD TK A VK+T + + + E+ +HG Sbjct: 900 RIHIDFAGPLN---GYY--LLVVVDAKTKYAE---VKLTRSISAVTTIDLLEEIFSIHGY 951 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P IISD T+ TS + + + G ++P ++G +ER + D L+ + + Sbjct: 952 PETIISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFV----DTLKRGIAKI 1007 Query: 2594 AGHW---DSFLPLAEFSYNNSYQSSID-MAPFEALYGRRCRS 2707 G L SY N+ S+++ P E +GR+ R+ Sbjct: 1008 KGEGSVNQQILNKFLISYRNTPHSALNGSTPAECHFGRKIRT 1049 >emb|CAA12930.1| (AJ228325) reverse transcriptase [Ginkgo biloba] Length = 138 Score = 175 bits (439), Expect = 3e-041 Identities = 79/138 (57%), Positives = 103/138 (74%) Frame = +3 Query: 633 MCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFW 812 +C+DY++LNK+ VK+KYP+P ID L D+L GAC FSK+D SGYHQ++++ D PK AF Sbjct: 1 LCVDYRELNKITVKDKYPIPIIDELLDELHGACFFSKLDLRSGYHQIRLKEVDTPKIAFR 60 Query: 813 TRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLR 992 T HYEFLVM FGLTNAP+ F SLMN I YL F+++F DDIL+YSK+ +H HL Sbjct: 61 THDGHYEFLVMPFGLTNAPSTFQSLMNQIFCLYLQRFILVFFDDILIYSKTWSDHLAHLD 120 Query: 993 IVLEMLREKKLYAKFSKC 1046 L++L + +LYAKFSKC Sbjct: 121 QALQLLSDNQLYAKFSKC 138 >gb|AAC28237.1| (AF076274) contains similarity to reverse trancriptase (Pfam: rvt.hmm, score: 96.80) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm, score: 14.43) [Arabidopsis thaliana] Length = 315 Score = 175 bits (439), Expect = 3e-041 Identities = 81/169 (47%), Positives = 117/169 (68%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 KG+ R S SP PVL V KKDG++RMC+D + +N + +K ++P+P + ++ D+L GA Sbjct: 127 KGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGAII 186 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 FSK+D SGYHQ+++R D KTAF T+ YE LVM FGLTNAP+ FM LMN +L+ ++ Sbjct: 187 FSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRSFI 246 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD 1061 FV+++ DDIL+Y+KS +H L ++L+ LR++ LYA KC F D Sbjct: 247 GKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKKCTFCSD 295 >emb|CAB77891.1| (AL161499) putative transposon protein [Arabidopsis thaliana] Length = 315 Score = 175 bits (439), Expect = 3e-041 Identities = 81/169 (47%), Positives = 117/169 (68%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 KG+ R S SP PVL V KKDG++RMC+D + +N + +K ++P+P + ++ D+L GA Sbjct: 127 KGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGAII 186 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 FSK+D SGYHQ+++R D KTAF T+ YE LVM FGLTNAP+ FM LMN +L+ ++ Sbjct: 187 FSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRSFI 246 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD 1061 FV+++ DDIL+Y+KS +H L ++L+ LR++ LYA KC F D Sbjct: 247 GKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKKCTFCSD 295 >emb|CAB06047.1| (Z83760) COS41.3 [Ciona intestinalis] Length = 1209 Score = 174 bits (436), Expect = 6e-041 Identities = 120/409 (29%), Positives = 202/409 (49%), Gaps = 5/409 (1%) Frame = +3 Query: 570 PSASPWGSPVLFVKKKDGSFRMCIDYKQ-LNKVNVKNKYPLPHIDNLFDQLQGACTFSKI 746 PS SPW + VL ++ RM IDY Q +N + YPLP I+++ +++ +S + Sbjct: 471 PSNSPWRAQVLVAREGSKKPRMVIDYSQTVNVFTELDAYPLPSIESIVNKVTQDKVYSSL 530 Query: 747 DFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFV 926 D S YHQ+ ++ +D P TAF + Y++ + FG+TN +AF ++N ++ V Sbjct: 531 DLRSAYHQIPLKDSDRPFTAFEAEGQLYQYKRLPFGVTNGVSAFQRIINRFIQDNHLNKV 590 Query: 927 ILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VM 1106 ++DDI V ++ +EH+ +L+ +L + L K + + + FLG+ +S Sbjct: 591 YAYLDDITVTGETLEEHDRNLKKLLVAAKRHNLTINEEKSKLRMTSIDFLGYRISYGDAR 650 Query: 1107 VDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDE 1286 DP ++ + + P ++ G+ +YY +++ FS L + K + + + Sbjct: 651 PDPERLRPLLNLPPPDTPRELKRIQGMFAYYAKWISRFSHKIQPLLCIKKFPL----TKD 706 Query: 1287 CEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHE 1466 F+ L T L A + + E + V DAS + + A L + +AY SR L E Sbjct: 707 ALVCFETLKTELAAASLGAIRSE-EPLQVETDASDYAIAAVLSQSGRPVAYMSRTLNTCE 765 Query: 1467 RNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQ----KYLNLRQRRWME 1634 RNYP + E AVV A+++W H+L G + TD RS+ ++F Q K N + W Sbjct: 766 RNYPAIEKEATAVVEAVRKWSHFLKGKSFTLVTDQRSVSFMFDQRNRGKIKNSKILMWRL 825 Query: 1635 LLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQTLANDL 1796 L + I++ P + N V DALSR L +E+QTL N+L Sbjct: 826 ELSQFTYDIVHRPGRDNFVPDALSRVNALNRDL-----------KELQTLHNNL 868 Score = 51.2 bits (120), Expect = 7e-004 Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 4/216 (1%) Frame = +2 Query: 2060 HPGATKMYRDLK-QHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWE 2236 HPG +++Y +K ++ +S + I+ QC C +VK P A + + WE Sbjct: 870 HPGFSRLYHFIKTRNLPFSSEEAKII--CRQCKTCAEVKPRFYKP--ASRNLIKAMRPWE 925 Query: 2237 KIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVP 2416 +++MDF G+ + +IVD ++ P K +A ++ + L G P Sbjct: 926 RLSMDFK---GPVKGRNSYLLIIVDEYSRFPFVFPCKRMTSAV--VIQCLTNLFCLFGFP 980 Query: 2417 LPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV---V 2587 + SDR F S K E G T +HP + Q ER Q + ++ + + Sbjct: 981 AYVHSDRGLSFISHEVKVFLTERGIATSKSTPYHPQGNSQCERVNQTIWRTVKLLLHGKL 1040 Query: 2588 EFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRS 2707 W+ LP A + + + + P E + RS Sbjct: 1041 MAEEQWEEVLPQALHAIRSLVCLATNETPHERFFNFSRRS 1080 >gb|AAC48336.1| (AF017040) Pol [Dictyostelium discoideum] Length = 1077 Score = 174 bits (436), Expect = 6e-041 Identities = 122/385 (31%), Positives = 199/385 (51%), Gaps = 38/385 (9%) Frame = +3 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 G + S S + SP++ +KK+D S+R+ DY+QLNKV V++ +P +D+L +Q + + F Sbjct: 131 GIIKRSESNYSSPIMLLKKRD-SWRVVHDYRQLNKVTVRDDHPFTPVDSLLNQCKDSKLF 189 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLD 917 SK D GY Q+ I TAF T +E+ M GL N+P+ F LM I Sbjct: 190 SKFDMIMGYFQVLINPEHAKYTAFITHIGKFEYTRMPQGLVNSPSTFARLMVEIFGKIKS 249 Query: 918 LFVILFIDDILVYSKSNKEHE*HLRIVLEML---REKKLYAKFSKCEFWLD*VSFLGHVV 1088 L + + DD+LV+SK ++ H ++ ML R+ L+ K E V FLG + Sbjct: 250 L--LQYFDDLLVHSK--LDYMVHFIEIIRMLLYCRKYLLFISREKSEMLKTEVDFLGFHI 305 Query: 1089 SKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVP 1268 KD + K+ + P N + +GL ++RR ++ ++ L+ +K Sbjct: 306 HKDGISPRAAKVRAISELPEPRNAKEAEAALGLFGFFRRHIENYAEKTYHLSKESKGKNK 365 Query: 1269 SVWSDECEESFQKLNTLLTTAPILNLPVEGKN---------------------------- 1364 SDE + F L I+ +P+E N Sbjct: 366 KTLSDESLKEFNNLKKEFEGENIVAIPIEQDNSIPIDIEKVKASTDMPIHSDNNNLNNGS 425 Query: 1365 FIVYCDASYWGLGAALMK----EKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKH 1532 F +YCD S L L + + VI + R+L ++ Y D E +++ +LK+++H Sbjct: 426 FHLYCDVSDKALSGVLYQIQGNKFKVIWFHCRKLTDTQKRYSIGDREFLSIIDSLKKFQH 485 Query: 1533 YLYGVKCEVYTDHRSLQYVFTQ---KYLNLRQRRWMELLKDYDITILYHPEKANVVADAL 1703 L G K +YTDH++L Y+ + K RQ +M+ +K++D + + K N +AD L Sbjct: 486 LLIGKKVSIYTDHQNLTYIINKSNDKPFTKRQDNYMKYIKEFDYELRHISGKKNGIADFL 545 Query: 1704 SRK 1712 SRK Sbjct: 546 SRK 548 Score = 136 bits (338), Expect = 2e-029 Identities = 118/425 (27%), Positives = 200/425 (46%), Gaps = 16/425 (3%) Frame = +2 Query: 1988 MYTPCR*YH*DYSYRGS*LQGLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQK 2167 ++T R YH D Y G H Y +++Q +++ M I ++ C CQ Sbjct: 608 IHTVIREYH-DTKYSG--------HHALDITYNNIRQDYYFKEMFSIIKRYIKSCATCQL 658 Query: 2168 VKYEHQMPGGALQRMPIPKFKWEKIAMDFVVGFPKTIG-------KYDSIWVIVDRLTKS 2326 ++ G LQ + IP W I++DF+ PKT+ + D + VIV RL+K Sbjct: 659 --NINRKDNGILQSLEIPFEVWRDISIDFL-SLPKTMYAINGFTVEVDQVCVIVCRLSKM 715 Query: 2327 AHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLC 2506 H +P T +A+ A+L ++ V RLHG P I+SDR +F S W+ + + +++ + Sbjct: 716 VHIVPCHKTIDAQHTAQLLLNHVFRLHGYPRTIVSDRDPRFLSEIWERWAKTMDSKLKMT 775 Query: 2507 TEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEAL 2686 DGQ+ER + + +L E+ +W +PL EF+ N+S S M+PF+ + Sbjct: 776 VAHRAQADGQTERMNREIIRILTKASTEYGENWSDIIPLIEFAMNSSMSKSTKMSPFQIV 835 Query: 2687 YGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFM 2866 YG +P+ F++ T + ++ K+ +++ L AQ KY + D F+ Sbjct: 836 YGFNPPTPVNHFNSLT----KTRIPMSNIKKI--VRDNILDAQINAPKYYNRGRGDVIFV 889 Query: 2867 EGEQVLLK-----VSPMKGVMWFGKRGKLSPRYIGPFKVLKRVG-EVAYELALPPGLSGV 3028 GE+V++K + K ++ KL + GPF + G V +L G Sbjct: 890 VGEKVMVKRKFFQTNLSKDLI----SHKLESKNCGPFIITAVHGNNVTLDLV---GYPKK 942 Query: 3029 HPVFYVSMLKTYHGDGNYIIRWDSVLLDENL---SYEEEPVAILDREVPKLRSREIASIK 3199 H VF + + D ++ S+ E + SYE E + D+ V K+ Sbjct: 943 HNVFNKDQIVKLYEDSEWLREEISMPEPEEMDEASYEVESILNHDK-VKKM-------YL 994 Query: 3200 VQWKNRPVEESTWEKEADMQE 3262 V++K P E E + D +E Sbjct: 995 VKFKGYPEPEWIREVDTDCEE 1015 >gb|AAC39021.1| (AF049230) Pol [Dictyostelium discoideum] Length = 1116 Score = 174 bits (436), Expect = 6e-041 Identities = 122/385 (31%), Positives = 199/385 (51%), Gaps = 38/385 (9%) Frame = +3 Query: 558 GFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTF 737 G + S S + SP++ +KK+D S+R+ DY+QLNKV V++ +P +D+L +Q + + F Sbjct: 131 GIIKRSESNYSSPIMLLKKRD-SWRVVHDYRQLNKVTVRDDHPFTPVDSLLNQCKDSKLF 189 Query: 738 SKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLD 917 SK D GY Q+ I TAF T +E+ M GL N+P+ F LM I Sbjct: 190 SKFDMIMGYFQVLINPEHAKYTAFITHIGKFEYTRMPQGLVNSPSTFARLMVEIFGKIKS 249 Query: 918 LFVILFIDDILVYSKSNKEHE*HLRIVLEML---REKKLYAKFSKCEFWLD*VSFLGHVV 1088 L + + DD+LV+SK ++ H ++ ML R+ L+ K E V FLG + Sbjct: 250 L--LQYFDDLLVHSK--LDYMVHFIEIIRMLLYCRKYLLFISREKSEMLKTEVDFLGFHI 305 Query: 1089 SKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVP 1268 KD + K+ + P N + +GL ++RR ++ ++ L+ +K Sbjct: 306 HKDGISPRAAKVRAISELPEPRNAKEAEAALGLFGFFRRHIENYAEKTYHLSKESKGKNK 365 Query: 1269 SVWSDECEESFQKLNTLLTTAPILNLPVEGKN---------------------------- 1364 SDE + F L I+ +P+E N Sbjct: 366 KTLSDESLKEFNNLKKEFEGENIVAIPIEQDNSIPIDIEKVKASTDMPIHSDNNNLNNGS 425 Query: 1365 FIVYCDASYWGLGAALMK----EKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKH 1532 F +YCD S L L + + VI + R+L ++ Y D E +++ +LK+++H Sbjct: 426 FHLYCDVSDKALSGVLYQIQGNKFKVIWFHCRKLTDTQKRYSIGDREFLSIIDSLKKFQH 485 Query: 1533 YLYGVKCEVYTDHRSLQYVFTQ---KYLNLRQRRWMELLKDYDITILYHPEKANVVADAL 1703 L G K +YTDH++L Y+ + K RQ +M+ +K++D + + K N +AD L Sbjct: 486 LLIGKKVSIYTDHQNLTYIINKSNDKPFTKRQDNYMKYIKEFDYELRHISGKKNGIADFL 545 Query: 1704 SRK 1712 SRK Sbjct: 546 SRK 548 Score = 136 bits (338), Expect = 2e-029 Identities = 118/425 (27%), Positives = 200/425 (46%), Gaps = 16/425 (3%) Frame = +2 Query: 1988 MYTPCR*YH*DYSYRGS*LQGLSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQK 2167 ++T R YH D Y G H Y +++Q +++ M I ++ C CQ Sbjct: 608 IHTVIREYH-DTKYSG--------HHALDITYNNIRQDYYFKEMFSIIKRYIKSCATCQL 658 Query: 2168 VKYEHQMPGGALQRMPIPKFKWEKIAMDFVVGFPKTIG-------KYDSIWVIVDRLTKS 2326 ++ G LQ + IP W I++DF+ PKT+ + D + VIV RL+K Sbjct: 659 --NINRKDNGILQSLEIPFEVWRDISIDFL-SLPKTMYAINGFTVEVDQVCVIVCRLSKM 715 Query: 2327 AHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLC 2506 H +P T +A+ A+L ++ V RLHG P I+SDR +F S W+ + + +++ + Sbjct: 716 VHIVPCHKTIDAQHTAQLLLNHVFRLHGYPRTIVSDRDPRFLSEIWERWAKTMDSKLKMT 775 Query: 2507 TEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEAL 2686 DGQ+ER + + +L E+ +W +PL EF+ N+S S M+PF+ + Sbjct: 776 VAHRAQADGQTERMNREIIRILTKASTEYGENWSDIIPLIEFAMNSSMSKSTKMSPFQIV 835 Query: 2687 YGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFM 2866 YG +P+ F++ T + ++ K+ +++ L AQ KY + D F+ Sbjct: 836 YGFNPPTPVNHFNSLT----KTRIPMSNIKKI--VRDNILDAQINAPKYYNRGRGDVIFV 889 Query: 2867 EGEQVLLK-----VSPMKGVMWFGKRGKLSPRYIGPFKVLKRVG-EVAYELALPPGLSGV 3028 GE+V++K + K ++ KL + GPF + G V +L G Sbjct: 890 VGEKVMVKRKFFQTNLSKDLI----SHKLESKNCGPFIITAVHGNNVTLDLV---GYPKK 942 Query: 3029 HPVFYVSMLKTYHGDGNYIIRWDSVLLDENL---SYEEEPVAILDREVPKLRSREIASIK 3199 H VF + + D ++ S+ E + SYE E + D+ V K+ Sbjct: 943 HNVFNKDQIVKLYEDSEWLREEISMPEPEEMDEASYEVESILNHDK-VKKM-------YL 994 Query: 3200 VQWKNRPVEESTWEKEADMQE 3262 V++K P E E + D +E Sbjct: 995 VKFKGYPEPEWIREVDTDCEE 1015 >gb|AAB71256.1| (AF026205) contains similarity to Pfam domains PF00552 (integrase, Score=16.8, E-value=0.00032, N=1), PF00078 (rvt, Score=118.8, E-value=3.3e-32, N=1) and PF00098 (zf-CCHC, Score=28.7, E-value=4.4e-05, N=1) [Caenorhabditis elegans] Length = 1350 Score = 173 bits (435), Expect = 8e-041 Identities = 114/377 (30%), Positives = 196/377 (51%), Gaps = 13/377 (3%) Frame = +3 Query: 579 SPWGSPVLFVKKKD-GSFRMCIDYK--QLNKVNVKNKYPLPHIDNLFDQLQGACTFSKID 749 S W +P++ ++KKD G R+C D+K LN ++ +PLP D+LF LQG C FSKID Sbjct: 378 SDWAAPIVVIRKKDTGKVRVCADFKCSGLNNSLIEEIHPLPTSDDLFGTLQG-CIFSKID 436 Query: 750 FSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVI 929 Y Q+ + + T +++ M+FGL APA F +++ ++ V Sbjct: 437 LKDAYLQIALDSESQKLAVINTHKGLFKYRRMTFGLKPAPAKFQKIIDKMIAGLPG--VA 494 Query: 930 LFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMV 1109 ++DD++V + S +EHE L +L+ +++ KC F ++FLG ++ K Sbjct: 495 AYLDDVIVSANSLEEHEKVLHELLKRIKDYGFRISPEKCNFAQSEITFLGFIIDKRGRRP 554 Query: 1110 DPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDEC 1289 DP K V++S + PT+ + SF+G +Y RFV S + L L K+ +W+D Sbjct: 555 DPKKTSVIRSMKAPTDQKQLMSFLGAICFYGRFVPKMSELRGPLDKLLKKDADWIWTDVE 614 Query: 1290 EESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK-----EKNVIAYASRQL 1454 +++F++L + + +L+ IV DAS +G+G ++ + IA+ +R L Sbjct: 615 QKAFEELRKAVADSTMLSHFNSSWPIIVAADASKYGIGGVILHVNPDGVEVPIAHFARSL 674 Query: 1455 KVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQK-----YLNLRQ 1619 E+ Y + E A+++ +K+ +++G + ++ TDHR L +F + R Sbjct: 675 TETEKRYSQIEKEALALIYTVKKSHKFVFGRRFKLQTDHRPLLALFGDNRDLPVHSQNRI 734 Query: 1620 RRWMELLKDYDITILYHPEKANVVADALSR 1709 RW L YD + Y + AD LSR Sbjct: 735 VRWATTLMSYDFELSYVATEKFAKADWLSR 764 Score = 81.9 bits (199), Expect = 4e-013 Identities = 85/324 (26%), Positives = 145/324 (44%), Gaps = 5/324 (1%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGA-LQRMPIPKFKWE 2236 HPG +M + +W+ + +D+ + V C NCQ+ +MP A L+ P P+ W Sbjct: 876 HPGVVRMKQKACSFVFWTGIDKDVEKLVRGCENCQE---SAKMPRVAPLRPWPEPQKAWS 932 Query: 2237 KIAMDFVVGFPKTIGKYDSIW--VIVDRLTKSAHFIPVKVTYNAEK*AKL-YISEVIRLH 2407 ++ +DF G + W VIVD +K A VK+T A + + EV H Sbjct: 933 RVHIDFA-------GPVNGHWFLVIVDAKSKYAE---VKMTKTISASATVSLLEEVFATH 982 Query: 2408 GVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVV 2587 G P ++SD T+FTS +K + +E G ++P ++G +ER + L+ L A + Sbjct: 983 GYPELLVSDNGTQFTSNQFKLMCQEYGMEHKTSAVYYPRSNGAAERFVDSLKRGL-AKIT 1041 Query: 2588 EFAGHWDSFLPLAEFSYNNSYQSSIDMA-PFEALYGRRCRSPIEWFDAFEVRPWGTDLLR 2764 L Y N+ S++ A P E +GR+ R+ + R L Sbjct: 1042 RSGVVTQQALNKFLICYRNTPHSALAGATPAECHFGRKIRTKMSLL--VPSREIVEGPLS 1099 Query: 2765 ESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSP 2944 + +++K + AA+++ F G+ V ++V KG +W + G Sbjct: 1100 DCQNRMKFQYDSRNAARAK------------TFELGQYVYVRV--QKGNVWSWEHG---- 1141 Query: 2945 RYIGPFKVLKRVGEVAYELALPPGLSGVH 3031 +V+KR+GEV YE+ + + H Sbjct: 1142 ------EVIKRLGEVLYEVQVGSRVQRTH 1164 >gb|AAF18651.1|AC006570_1 (AC006570) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 622 Score = 173 bits (434), Expect = 1e-040 Identities = 107/304 (35%), Positives = 162/304 (53%), Gaps = 4/304 (1%) Frame = +3 Query: 798 KTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEH 977 KT F + + MSFGL NAP F M I +++ + +F+DD +S Sbjct: 165 KTTFTCPNGTFAYKRMSFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDDFSGFSSCLL-- 222 Query: 978 E*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTN 1157 +L VLE E L + KC F + LGH +S + VD KI+V+ + P Sbjct: 223 --NLCRVLERCEETNLVLNWEKCHFMVHEGIVLGHKISGKGIEVDKAKIDVMIQLQPPKT 280 Query: 1158 VT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPI 1337 V +RSF+G A +YRRF+K FS +A LT L + + ++C ++F + L +API Sbjct: 281 VKDIRSFLGHAEFYRRFIKDFSKIARPLTRLLCKETEFNFDEDCLKAFHLIKETLVSAPI 340 Query: 1338 LNLPVEGKNFIVYCDASYWGLGAALMK----EKNVIAYASRQLKVHERNYPTHDLELAAV 1505 P F + CDA + +GA L + + +VI YASR + + Y T + EL AV Sbjct: 341 FQAPNWDHPFEIMCDAFDYAVGAVLDQKIDDKLHVIYYASRTMDEAQTRYATIEKELLAV 400 Query: 1506 VFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPEKAN 1685 VFA ++ + YL G K +VY DH +L++++ +K R RW+ LL+++D+ I+ N Sbjct: 401 VFAFEKIRSYLVGFKVKVYIDHAALRHIYAKKETKSRLLRWILLLQEFDMEIIDKKGVEN 460 Query: 1686 VVADALSR 1709 VAD LSR Sbjct: 461 GVADHLSR 468 Score = 43.4 bits (100), Expect = 0.16 Identities = 29/92 (31%), Positives = 46/92 (49%), Gaps = 1/92 (1%) Frame = +2 Query: 2525 TDGQSERTIQVLEDMLRACVVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCR 2704 T GQ E + + ++D+L V W + L ++Y +Y++ I PF+ LYG+ C Sbjct: 524 TSGQVEVSNRQMKDILTKVVGVSKRDWSTKLDETLWAYRTAYKTPIGRTPFQMLYGKSCH 583 Query: 2705 SPIEWFDAFEVRP-WGTDLLRESLDKVKCIQEK 2800 P+E E + W T LL ++K QEK Sbjct: 584 LPVE----VEYKAIWATKLLNL---EIKGAQEK 609 >gb|AAD27571.1|AF114171_12 (AF114171) polyprotein [Sorghum bicolor] Length = 1877 Score = 168 bits (422), Expect = 3e-039 Identities = 125/448 (27%), Positives = 210/448 (45%), Gaps = 15/448 (3%) Frame = +3 Query: 363 IESVSIVREFLDVFP---TDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXX 533 +E + ++++ D+F DL G+ D I+ +D++P RP M+ Sbjct: 837 LELLDVLQKNQDIFAWSAADLQGVSRDI-IEHSLDIDPRMRPKKQRQRKMSEERTLAAKA 895 Query: 534 XXXXXXSKGFTRPSASP-WGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLF 710 R P W + V+ V KK+G RMCID+ LNK VK+ +PLP ID Sbjct: 896 EVQRLLDAKVIREVIYPEWLANVVLVPKKNGKMRMCIDFTDLNKACVKDSFPLPRIDTSV 955 Query: 711 DQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLM 890 D+ G FS +D SGYHQ+ ++ D K +F T + Y + M GL NA A F +M Sbjct: 956 DKAAGCQRFSLLDCFSGYHQIWLKKEDEGKASFTTPFGTYCYTRMPEGLKNAGATFSRMM 1015 Query: 891 NGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VS 1070 +L L +I ++DD++V SK ++H L+ LR L KC F + Sbjct: 1016 GKVLGSQLQRNIIAYVDDVVVMSKRKEDHIKDLQETFVNLRSAGLKLNPEKCVFGVSKGK 1075 Query: 1071 FLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNL 1250 LG+++S + + +P K + + S P+N V+ G + RF+ + + + Sbjct: 1076 MLGYIISSEGIRANPDKTKAIMSMAEPSNKKEVQRLTGRIAALNRFISRSAERSLPFFKV 1135 Query: 1251 TKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE--- 1421 ++ + W E E+F++L + T ++ +P ++Y AS + L+ E Sbjct: 1136 LREG-KTEWGPEQSEAFRQLKNYIATNLLVTVPEPDTPLLLYVAASEHAVSGVLVHETSD 1194 Query: 1422 -----KNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQY 1586 + + Y S L + NY + AV+ A ++ KHY + +V T + L Sbjct: 1195 TKGTVQRPVYYVSEALSGAKLNYTEIEKIAYAVLCASRKLKHYFQSHEIKVPTS-QPLGD 1253 Query: 1587 VFTQKYLNLRQRRWMELLKDYDITILYHPE---KANVVADALS 1706 + K + R +W L +DIT Y P K+ +AD ++ Sbjct: 1254 ILRNKEASGRIGKWAAELSQFDIT--YVPRTSIKSQALADFMA 1294 Score = 80.0 bits (194), Expect = 1e-012 Identities = 75/314 (23%), Positives = 128/314 (39%), Gaps = 10/314 (3%) Frame = +2 Query: 2090 LKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPI--PKFKWEKIAMDFVVG 2263 L+Q F+W RD E V C CQ P Q +P P +W MD V Sbjct: 1553 LRQGFYWPTHIRDAEEIVKTCKACQTFSPIQSGPSALTQLIPASWPLQRW---GMDLVGP 1609 Query: 2264 FPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCT 2443 P G V ++ T+ P+ T +E K + ++ GVP + D Sbjct: 1610 MPTAQGGNKFAVVAIEYFTRWIEAKPL-TTITSETIRKFFWQNIVCRFGVPRLLTVDNGK 1668 Query: 2444 KFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF-AGHWDSFLP 2620 +F S +K +GT++ + +HP ++G ER + + + ++ G W LP Sbjct: 1669 QFDSDNFKEFCHLIGTKIAFASVYHPESNGAVERANRTIFSAISKTLLNLRKGKWVEELP 1728 Query: 2621 LAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDL------LRESLDKV 2782 +S+N + + PF+ LYG P E +R L +E+L+ + Sbjct: 1729 RVVWSHNTTVSRATGFTPFKLLYGEEAMLP-EEIKHQSLRSMKQQLAEDEEYCKETLESI 1787 Query: 2783 KCIQEKHLAA-QSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGP 2959 + +++ Q K + +KV + G+ VL K GKL P++ GP Sbjct: 1788 RLEAVENITRYQQETKNWRDRKVVRKDIQNGDLVLRKKGDHPNA------GKLQPKWEGP 1841 Query: 2960 FKVLKRVGEVAYELALPPGLSGVH 3031 + ++ ++ L G + H Sbjct: 1842 YTAIQAGRSGSFYLKDLEGRTSTH 1865 >gb|AAD19359.1| (AF098806) polyprotein [Sorghum bicolor] Length = 1877 Score = 168 bits (422), Expect = 3e-039 Identities = 125/448 (27%), Positives = 210/448 (45%), Gaps = 15/448 (3%) Frame = +3 Query: 363 IESVSIVREFLDVFP---TDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXX 533 +E + ++++ D+F DL G+ D I+ +D++P RP M+ Sbjct: 837 LELLDVLQKNQDIFAWSAADLQGVSRDI-IEHSLDIDPRMRPKKQRQRKMSEERTLAAKA 895 Query: 534 XXXXXXSKGFTRPSASP-WGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLF 710 R P W + V+ V KK+G RMCID+ LNK VK+ +PLP ID Sbjct: 896 EVQRLLDAKVIREVIYPEWLANVVLVPKKNGKMRMCIDFTDLNKACVKDSFPLPRIDTSV 955 Query: 711 DQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLM 890 D+ G FS +D SGYHQ+ ++ D K +F T + Y + M GL NA A F +M Sbjct: 956 DKAAGCQRFSLLDCFSGYHQIWLKKEDEGKASFTTPFGTYCYTRMPEGLKNAGATFSRMM 1015 Query: 891 NGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VS 1070 +L L +I ++DD++V SK ++H L+ LR L KC F + Sbjct: 1016 GKVLGSQLQRNIIAYVDDVVVMSKRKEDHIKDLQETFVNLRSAGLKLNPEKCVFGVSKGK 1075 Query: 1071 FLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNL 1250 LG+++S + + +P K + + S P+N V+ G + RF+ + + + Sbjct: 1076 MLGYIISSEGIRANPDKTKAIMSMAEPSNKKEVQRLTGRIAALNRFISRSAERSLPFFKV 1135 Query: 1251 TKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE--- 1421 ++ + W E E+F++L + T ++ +P ++Y AS + L+ E Sbjct: 1136 LREG-KTEWGPEQSEAFRQLKNYIATNLLVTVPEPDTPLLLYVAASEHAVSGVLVHETSD 1194 Query: 1422 -----KNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQY 1586 + + Y S L + NY + AV+ A ++ KHY + +V T + L Sbjct: 1195 TKGTVQRPVYYVSEALSGAKLNYTEIEKIAYAVLCASRKLKHYFQSHEIKVPTS-QPLGD 1253 Query: 1587 VFTQKYLNLRQRRWMELLKDYDITILYHPE---KANVVADALS 1706 + K + R +W L +DIT Y P K+ +AD ++ Sbjct: 1254 ILRNKEASGRIGKWAAELSQFDIT--YVPRTSIKSQALADFMA 1294 Score = 80.0 bits (194), Expect = 1e-012 Identities = 75/314 (23%), Positives = 128/314 (39%), Gaps = 10/314 (3%) Frame = +2 Query: 2090 LKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPI--PKFKWEKIAMDFVVG 2263 L+Q F+W RD E V C CQ P Q +P P +W MD V Sbjct: 1553 LRQGFYWPTHIRDAEEIVKTCKACQTFSPIQSGPSALTQLIPASWPLQRW---GMDLVGP 1609 Query: 2264 FPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCT 2443 P G V ++ T+ P+ T +E K + ++ GVP + D Sbjct: 1610 MPTAQGGNKFAVVAIEYFTRWIEAKPL-TTITSETIRKFFWQNIVCRFGVPRLLTVDNGK 1668 Query: 2444 KFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF-AGHWDSFLP 2620 +F S +K +GT++ + +HP ++G ER + + + ++ G W LP Sbjct: 1669 QFDSDNFKEFCHLIGTKIAFASVYHPESNGAVERANRTIFSAISKTLLNLRKGKWVEELP 1728 Query: 2621 LAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDL------LRESLDKV 2782 +S+N + + PF+ LYG P E +R L +E+L+ + Sbjct: 1729 RVVWSHNTTVSRATGFTPFKLLYGEEAMLP-EEIKHQSLRSMKQQLAEDEEYCKETLESI 1787 Query: 2783 KCIQEKHLAA-QSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGP 2959 + +++ Q K + +KV + G+ VL K GKL P++ GP Sbjct: 1788 RLEAVENITRYQQETKNWRDRKVVRKDIQNGDLVLRKKGDHPNA------GKLQPKWEGP 1841 Query: 2960 FKVLKRVGEVAYELALPPGLSGVH 3031 + ++ ++ L G + H Sbjct: 1842 YTAIQAGRSGSFYLKDLEGRTSTH 1865 >gb|AAD19780.1| (AC006528) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 841 Score = 165 bits (414), Expect = 2e-038 Identities = 131/414 (31%), Positives = 191/414 (45%), Gaps = 18/414 (4%) Frame = +3 Query: 573 SASPWGSPVLFVKKKDG------------------SFRMCIDYKQLNKVNVKNKYPLPHI 698 S S W SPV V KK G RMCIDY++LN K+ +PL I Sbjct: 407 SDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTGHRMCIDYRKLNSATRKDNFPLSFI 466 Query: 699 DNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAF 878 D + ++L + +D G+ Q+ I D KT F Y + + M FGL NAPA F Sbjct: 467 DQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGTFAYRRMPFGLCNAPATF 526 Query: 879 MSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWL 1058 M I ++ F+ +FIDD L VL+ +K L + K F + Sbjct: 527 QHCMKYIFSDMIEDFMEVFIDDFL---------------VLQRCEDKHLVLNWEKSHFMV 571 Query: 1059 D*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQ 1238 LGH +S+ V VD KIE+++ F+G A +YRRF+K FS +A Sbjct: 572 RDGIVLGHKISEKGVEVDRAKIEIMR-------------FLGHAGFYRRFIKDFSKIARP 618 Query: 1239 LTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK 1418 T L + S + D C ++F + L +A I+ P F V CDAS + +GA L + Sbjct: 619 CTQLLCKEQKSEFDDTCLQAFNIVKESLVSALIVQPPEWELPFEVICDASDYVVGAVLGQ 678 Query: 1419 EKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQ 1598 K+ K+H Y + L+ A V+ V+T H +L+Y+ ++ Sbjct: 679 RKD--------KKLHAIYYASRTLDGAQVI----------------VHTVHAALRYLLSK 714 Query: 1599 KYLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQ 1778 K R RW+ LL+D+D+ I N VAD LSR E L + LA Sbjct: 715 KDAKPRLLRWILLLQDFDLEIKDKKGIENEVADNLSRLRVQEEVLMRDILPGENLASIED 774 Query: 1779 TLANDLMRLEVN 1814 +++ RL V+ Sbjct: 775 CYMDEVGRLRVS 786 >gb|AAD19756.1| (AC006413) putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis thaliana] Length = 280 Score = 163 bits (409), Expect = 9e-038 Identities = 102/277 (36%), Positives = 145/277 (51%), Gaps = 1/277 (0%) Frame = +2 Query: 2246 MDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPI 2425 MDFV+G P+T DS++V+VDR +K HFI K T +A AKL+ EV+RLHGVP I Sbjct: 1 MDFVLGLPRTQRGVDSVFVVVDRFSKMTHFIACKKTADASNIAKLFFKEVVRLHGVPKSI 60 Query: 2426 ISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHW 2605 SDR TKF S FW TL GT ++ + H DGQ+E T + L +M+R+ + W Sbjct: 61 TSDRDTKFLSHFWSTLWRMFGTALNRSSTPHTQIDGQTEVTNRTLGNMVRSICGDNPKQW 120 Query: 2606 DSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVK 2785 D LP EF+Y NS +D+ G + + E + VK Sbjct: 121 DLALPQIEFAY-NSVVHVVDLVKLPKALGA-----------------SAETMAEEILVVK 162 Query: 2786 CIQEKHLAAQSRKKKYVVQKVRDFE-FMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPF 2962 + + L A +K K K R F+ F EG+ V++ + KG G K+ PR GPF Sbjct: 163 EVVKAKLEATGKKNKVAADKRRRFKVFKEGDDVMVLL--RKGRFAVGTYNKVKPRKYGPF 220 Query: 2963 KVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGDG 3076 KVL+++ + AY +ALP ++ + F V+ + YH DG Sbjct: 221 KVLRKINDNAYVVALPKSMN-ISNTFNVADIHEYHADG 257 >gb|AAD11615.1| (AF049110) prpol [Zea mays] Length = 1317 Score = 157 bits (392), Expect = 9e-036 Identities = 119/437 (27%), Positives = 203/437 (46%), Gaps = 12/437 (2%) Frame = +3 Query: 396 DVFP---TDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFT 566 DVF DL G+ D I+ ++++P RP M+ S G Sbjct: 283 DVFAWSANDLCGVNRDV-IEHSLNVDPSFRPRKQRLRKMSDDKAEGARNEVKRLLSAGVI 341 Query: 567 RPSASP-WGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSK 743 R P W + + VKK +G +RMCID+ LNK K+++PLP ID+L D + S Sbjct: 342 REVKYPEWLANTVMVKKANGKWRMCIDFTDLNKACPKDEFPLPRIDSLVDATASSELMSL 401 Query: 744 IDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLF 923 +D SGYHQ+ ++ D PKT+F T Y +L M GL NA +F + +L+ + Sbjct: 402 LDCYSGYHQIWMKREDEPKTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRN 461 Query: 924 VILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*V 1103 V+ ++DDI+V S + H L+ R+ L KC F + FLG +VS + Sbjct: 462 VLTYVDDIIVKSTKQENHIADLQETFASFRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGI 521 Query: 1104 MVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSD 1283 +P KIE + E PT + G + RF+ + + K + W Sbjct: 522 EANPSKIEAILRMEPPTTKKGAQRLTGRLASLNRFISRSAERNLPFFEVLKSAEVFQWGP 581 Query: 1284 ECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK--------NVIAY 1439 +++F++L L L P+ G ++Y AS+ + AAL++EK + + Sbjct: 582 IQQKAFEELKQYLIDLTALTPPMPGAPLLLYVAASHSAVSAALVQEKLDGQTRKQVPVYF 641 Query: 1440 ASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQ 1619 S L + ++NY + L V+ A ++ +HY + + L+ + + R Sbjct: 642 VSEVLSISKKNYTELEKVLYVVLMASRKLRHYFQAYNI-IVPSSQPLKDIMRNREATGRI 700 Query: 1620 RRWMELLKDYDITILYHPEKANVVADALS 1706 +W L ++ I ++ ++++ + AL+ Sbjct: 701 GKWAAELNEFCIEYVH---RSSIQSQALA 726 Score = 76.9 bits (186), Expect = 1e-011 Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 1/222 (0%) Frame = +2 Query: 2051 LSTHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFK 2230 + + P K++R Q F+W + D E V +C CQK + + P Q + P + Sbjct: 980 IGSRPLLGKIFR---QGFYWPKAASDAAELVQKCEGCQKCARDQKQPSSLTQLIQ-PIWP 1035 Query: 2231 WEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHG 2410 ++ +D + P G + V V+ +K P+ T + K + ++ G Sbjct: 1036 LQRWGLDLLGPLPPAQGNLRYVVVAVEYFSKWIEAKPL-ATITSATVQKFFWQNIVCRFG 1094 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQ-VLEDMLRACVV 2587 VP I D T+F S ++ +++GT++ + HP ++G ER ++ ++++ Sbjct: 1095 VPKAITVDNGTQFDSEAFRDFCDQIGTKIHFASVRHPESNGLVERANGIIMTGIMKSIFN 1154 Query: 2588 EFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIE 2716 + G W L +S+N + S PF+ L+G +P E Sbjct: 1155 QPRGKWPDQLTKVVWSHNTTTSRSTGFTPFKLLFGDEAITPEE 1197 >gb|AAD22283.1|AC006920_7 (AC006920) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1787 Score = 155 bits (388), Expect = 3e-035 Identities = 118/430 (27%), Positives = 191/430 (43%), Gaps = 7/430 (1%) Frame = +3 Query: 366 ESVSIVREFLDVFPTDLPGMPPDRDIDFC--IDLEPGTRPISIPSYTMAPTXXXXXXXXX 539 E V+ +R+ F + MP C ++++P +P+ + P Sbjct: 743 ELVNFLRQNAATFAWSVEDMPGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTKDVNEEV 802 Query: 540 XXXXSKGFTRPSASP-WGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQ 716 G P W + VKKK+G +R+CID+ LNK K+ +PLPHID L + Sbjct: 803 KKLLDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEA 862 Query: 717 LQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNG 896 G S +D SGY+Q+ + D KT F T Y + VM FGL NA A + L+N Sbjct: 863 TAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQGTYCYKVMPFGLKNAGATYPRLVNQ 922 Query: 897 ILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFL 1076 + LD + ++IDD+LV S +EH HLR ++L + SKC F + FL Sbjct: 923 MFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFGVTSGEFL 982 Query: 1077 GHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTK 1256 G++V++ + +P +I + P N V+ +G + RF+ + L + Sbjct: 983 GYLVTRRGIEANPKQISAIIDLPSPRNTREVQRLIGRIAALNRFISRSTDKCLPFYQLLR 1042 Query: 1257 QSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK----EK 1424 + W ++CE EG+ +Y S + L++ E+ Sbjct: 1043 ANKRFEWDEKCE--------------------EGETLYLYIAVSTSAVSGVLVREDRGEQ 1082 Query: 1425 NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKY 1604 + I Y S+ L E YPT + AVV + ++ + Y EV T ++ L+ + Sbjct: 1083 HPIFYVSKTLDGAELRYPTLEKLAFAVVISARKLRPYFKSYTVEVLT-NQPLRTILHSPS 1141 Query: 1605 LNLRQRRWMELLKDYDI 1655 + R +W L +YDI Sbjct: 1142 QSGRLAKWAVELSEYDI 1158 Score = 94.0 bits (230), Expect = 9e-017 Identities = 96/319 (30%), Positives = 144/319 (45%), Gaps = 31/319 (9%) Frame = +2 Query: 2060 HPGATKMYRDLKQHF-WWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRM--PIPKFK 2230 H G + +++H +W M D +FVA+C CQ +P LQ P P + Sbjct: 1446 HSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFIHIPSEVLQTAMPPYPFMR 1505 Query: 2231 WEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEV----- 2395 W AMD + FP + K I V+ D TK + AE A++ EV Sbjct: 1506 W---AMDIIRPFPASRQK-KYILVMTDYFTK---------WFEAESYARIQSKEVQNFVW 1552 Query: 2396 ---IRLHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLED 2566 I HG+P I++D T+FTS+ ++ + R+ T +P +GQ+E T + + D Sbjct: 1553 KNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEATNKTILD 1612 Query: 2567 MLRACVVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPW 2746 L+ + E G W L +SY + + S D PF YG +P E Sbjct: 1613 GLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCE---------A 1663 Query: 2747 GTDLLRES-------------LDKVKCIQEKHLAA-------QSRKKKYVVQKVRDFEFM 2866 G +R S LD + ++E+ A Q K+ +KV++ F Sbjct: 1664 GLPTVRRSMLINDPTLNDQMLLDNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFA 1723 Query: 2867 EGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVLKRVGEVAYELALPPG 3016 EG+ VL KV GKL + GP+ + K V YEL G Sbjct: 1724 EGDLVLRKVFENTVEQ---DAGKLGAHWEGPYLISKVVKPGVYELLTMDG 1770 >gb|AAA62375.1| (M90542) reverse transcriptase [Cauliflower mosaic virus] Length = 679 Score = 154 bits (386), Expect = 5e-035 Identities = 112/388 (28%), Positives = 191/388 (48%), Gaps = 17/388 (4%) Frame = +3 Query: 567 RPSASPWGSPVLFV----KKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +PS SP +P V +K+ G RM ++YK +NK + + Y LP+ D L ++G Sbjct: 276 KPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKI 335 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 FS D SG+ Q+ + P TAF HYE+ V+ FGL AP+ F M+ + + Sbjct: 336 FSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFR 395 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 F +++DDILV+S + ++H H+ ++L+ + + K + + ++FLG + + Sbjct: 396 K-FCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 454 Query: 1095 D*VMVDPYKIEVVKSW-ERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + +E + + + + ++ F+G+ +Y ++ + + L K++VP Sbjct: 455 GTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPW 514 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDAS--YWG--LGAALMKE----KN 1427 W+ E QK+ L P L+ P+ + I+ DAS YWG L A + E + Sbjct: 515 KWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTEL 574 Query: 1428 VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYL 1607 + YAS K ERNY ++D E AV+ +K++ YL V + TD+ + Y Sbjct: 575 ICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYK 634 Query: 1608 N----LRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMES 1730 R RW L Y + + N AD LSR+ + S Sbjct: 635 GDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKVNS 679 >emb|CAA23460.1| (V00141) reading frame (V) [Cauliflower mosaic virus] Length = 679 Score = 153 bits (383), Expect = 1e-034 Identities = 112/388 (28%), Positives = 191/388 (48%), Gaps = 17/388 (4%) Frame = +3 Query: 567 RPSASPWGSPVLFV----KKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +PS SP +P V +K+ G RM ++YK +NK V + Y LP+ D L ++G Sbjct: 276 KPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKI 335 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 FS D SG+ Q+ + P TAF HYE+ V+ FGL AP+ F M+ + + Sbjct: 336 FSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFR 395 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 F +++DDILV+S + ++H H+ ++L+ + + K + + ++FLG + + Sbjct: 396 K-FCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 454 Query: 1095 D*VMVDPYKIEVVKSW-ERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + +E + + + + ++ F+G+ +Y ++ + + L K++VP Sbjct: 455 GTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPW 514 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDAS--YWG--LGAALMKE----KN 1427 W+ E QK+ L P L+ P+ + I+ DAS YWG L A + E + Sbjct: 515 RWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTEL 574 Query: 1428 VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYL 1607 + YAS K E+NY ++D E AV+ +K++ YL V + TD+ + Y Sbjct: 575 ICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYK 634 Query: 1608 N----LRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMES 1730 R RW L Y + + N AD LSR+ + S Sbjct: 635 GDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKVNS 679 >emb|CAA55974.1| (X79465) ORF V [Cauliflower mosaic virus] Length = 680 Score = 153 bits (382), Expect = 1e-034 Identities = 111/388 (28%), Positives = 191/388 (48%), Gaps = 17/388 (4%) Frame = +3 Query: 567 RPSASPWGSPVLFV----KKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +PS SP +P V +K+ G RM ++YK +NK + + Y LP+ D L ++G Sbjct: 277 KPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKI 336 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 FS D SG+ Q+ + P TAF HYE+ V+ FGL AP+ F M+ + + Sbjct: 337 FSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFR 396 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 F +++DDILV+S + ++H H+ ++L+ + + K + + ++FLG + + Sbjct: 397 K-FCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 455 Query: 1095 D*VMVDPYKIEVVKSW-ERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + +E + + + + ++ F+G+ +Y ++ + + L K++VP Sbjct: 456 GTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPW 515 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDAS--YWG--LGAALMKE----KN 1427 W+ E QK+ L P L+ P+ + I+ DAS YWG L A + E + Sbjct: 516 RWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTEL 575 Query: 1428 VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYL 1607 + YAS K E+NY ++D E AV+ +K++ YL V + TD+ + Y Sbjct: 576 ICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYK 635 Query: 1608 N----LRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMES 1730 R RW L Y + + N AD LSR+ + S Sbjct: 636 GDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKVNS 680 >gb|AAD37341.1|AF140604_5 (AF140604) reverse transcriptase [Cauliflower mosaic virus] Length = 674 Score = 152 bits (379), Expect = 3e-034 Identities = 112/388 (28%), Positives = 190/388 (48%), Gaps = 17/388 (4%) Frame = +3 Query: 567 RPSASPWGSPVLFV----KKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +PS SP +P V +K+ G RM ++YK +NK V + Y LP+ D L ++G Sbjct: 271 KPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKI 330 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 FS D SG+ Q+ P TAF HYE+ V+ FGL AP+ F M+ + + Sbjct: 331 FSSFDCKSGFWQVLPDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFR 390 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 F +++DDILV+S + ++H H+ ++L+ + + K + + ++FLG + + Sbjct: 391 K-FCCVYVDDILVFSNTEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 449 Query: 1095 D*VMVDPYKIEVVKSW-ERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + +E + + + + ++ F+G+ +Y ++ + + L K++VP Sbjct: 450 GTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPW 509 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDAS--YWG--LGAALMKE----KN 1427 W+ E QK+ L P L+ P+ + I+ DAS YWG L A + E + Sbjct: 510 KWTKEDTLYMQKVKKNLQGFPPLHRPLPEEKLIIETDASDDYWGGMLKAIQINEGTNTEL 569 Query: 1428 VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYL 1607 + YAS K E+NY ++D E AV+ +K++ YL V + TD+ + Y Sbjct: 570 ICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYK 629 Query: 1608 N----LRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMES 1730 R RW L Y + + N AD LSR+ + S Sbjct: 630 GDSKLGRNIRWQAWLSHYSFDVEHIKGTDNRFADFLSREFNRVNS 674 >gb|AAD15474.1| (AC006067) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1466 Score = 151 bits (377), Expect = 5e-034 Identities = 85/279 (30%), Positives = 142/279 (50%) Frame = +3 Query: 585 WGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGY 764 W + + VKKK+G R+CID+ LNK K+ +PLPHID L + G S +D SGY Sbjct: 501 WLANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLSFMDAFSGY 560 Query: 765 HQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDD 944 +Q+ + D KT F T Y + VM FGL NA A + L+N + ++ + ++IDD Sbjct: 561 NQIMMNPEDQEKTLFITDRGIYCYKVMPFGLRNAGATYPRLVNKMFSEHVGKTMEVYIDD 620 Query: 945 ILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKI 1124 +L+ S ++H HL +L + ++ +KC F + FLG++V+K + +P +I Sbjct: 621 MLIKSLKKEDHVKHLEECFAILNQYQMKLNPAKCTFGVPSGEFLGYIVTKRGIEANPNQI 680 Query: 1125 EVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQ 1304 + P N V+ G + RF+ + + + K + +W ++CEE+F Sbjct: 681 NAFLNMPSPKNFKEVQRLTGRIAALNRFISRSTDKSLPFYQILKGNKEFLWDEKCEEAFG 740 Query: 1305 KLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE 1421 +L LT+ P+L P + +Y S + L++E Sbjct: 741 QLKAYLTSPPVLFKPELDEKLYLYVSVSNHAVSGVLIRE 779 Score = 47.6 bits (111), Expect = 0.008 Identities = 85/381 (22%), Positives = 143/381 (37%), Gaps = 25/381 (6%) Frame = +2 Query: 2066 GATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRM--PIPKFKWEK 2239 G ++ K ++W M D V++ +C CQ P + P P +W Sbjct: 989 GRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHAPLIHQPSELFSSISAPYPFMRW-- 1046 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 +MD + ++ + V+ D Y S+ I + L Sbjct: 1047 -SMDIIGPLHRSTRGVQYLLVLTD-----------------------YFSKWIEAEAILL 1082 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 W G +V T +P +GQ+E + + L+ + G Sbjct: 1083 N-------------W-------GIKVSYSTLRYPQGNGQAEAANKTILSNLKKRLNHLKG 1122 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEW-------FDAFEVRPWGTDL 2758 W L ++Y + + S PF +YG + P E +A + + Sbjct: 1123 GWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVVPAELNVPGLRRTEAPLNEKENSAM 1182 Query: 2759 LRESLDKVKCIQEKHLAA----QSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGK 2926 L +SLD + +++ L Q +Y KV+ F G+ VL +V K Sbjct: 1183 LDDSLDTINERRDQALIQIQNYQHAAARYYNSKVKSRPFFVGDYVLKRVFDNKKE---EG 1239 Query: 2927 RGKLSPRYIGPFKVLKRVGEVAYEL--------ALPPGLSGVHPVFYVSMLKTYHGDGNY 3082 GKL + GP+ V + V Y L P ++G H + S L D Sbjct: 1240 AGKLGINWEGPYIVTEVVRNGVYRLKDLEDRPVQRPWNVNGHHTIRDASKLCDSEFDPIS 1299 Query: 3083 IIRWDS--VLLDENLSYEEEPVAILDREVPK--LRSREIASIKVQW 3208 +R ++ VL E+L V + R+VP RS ++ S +W Sbjct: 1300 GVRVEAFFVLSRESLDEGHRDVLVSARKVPDKCTRSSDLGSKVTKW 1345 >gb|AAA21736.1| (M90543) reverse transcriptase [Cauliflower mosaic virus] Length = 680 Score = 150 bits (376), Expect = 7e-034 Identities = 111/388 (28%), Positives = 188/388 (47%), Gaps = 17/388 (4%) Frame = +3 Query: 567 RPSASPWGSPVLFV----KKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +PS SP +P V +K+ G RM ++YK +NK V + Y LP+ D L ++G Sbjct: 277 KPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKI 336 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 FS D SG+ Q+ + P TAF HYE+ V+ FGL AP+ F M+ + + Sbjct: 337 FSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFR 396 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 F +++DDILV+S + ++H H+ ++L+ + + K + + ++FLG + + Sbjct: 397 K-FCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 455 Query: 1095 D*VMVDPYKIEVVKSW-ERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + +E + + + + ++ F+G+ +Y ++ + + L K++VP Sbjct: 456 GTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPW 515 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDAS--YWG--LGAALMKE----KN 1427 W+ E QK+ L P L+ P+ + I+ DAS YWG L A + E + Sbjct: 516 KWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGINTEL 575 Query: 1428 VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYL 1607 + YAS K ERNY ++D E AV+ +K++ YL TD+ + Y Sbjct: 576 ICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPAHFLTRTDNTHFKSFVNLNYK 635 Query: 1608 N----LRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMES 1730 R RW L Y + + N D LSR+ + S Sbjct: 636 GDSKLGRNIRWQAWLNHYSFDVEHIKGTDNHFVDFLSREFNKVNS 680 >gb|AAA46358.1| (M90541) reverse transcriptase [Cauliflower mosaic virus] Length = 680 Score = 149 bits (373), Expect = 2e-033 Identities = 110/388 (28%), Positives = 189/388 (48%), Gaps = 17/388 (4%) Frame = +3 Query: 567 RPSASPWGSPVLFVKKKD----GSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +PS SP +P V + G+ RM ++YK +NK V + Y LP+ D L ++G Sbjct: 277 KPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKI 336 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 FS D SG+ Q+ + P TAF HYE+ V+ FGL AP+ F M+ + + Sbjct: 337 FSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFR 396 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 F +++DDI+V+S + ++H H+ ++L+ + + K + + ++FLG + + Sbjct: 397 K-FCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 455 Query: 1095 D*VMVDPYKIEVVKSW-ERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + +E + + + + ++ F+G+ +Y ++ + + L K++VP Sbjct: 456 GTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPNLAQMRQPLQAKLKENVPW 515 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDAS--YWG--LGAALMKE----KN 1427 W+ E QK+ L P L+ P+ + I+ DAS YWG L A + E + Sbjct: 516 KWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTEL 575 Query: 1428 VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYL 1607 + Y S K ERNY ++D E AV+ +K++ YL V + TD+ + Y Sbjct: 576 ICRYRSGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYK 635 Query: 1608 N----LRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMES 1730 R RW L Y + + N AD LSR+ + S Sbjct: 636 GDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNKVNS 680 >gb|AAA46350.1| (M10376) ORF5; putative [Cauliflower mosaic virus] Length = 675 Score = 149 bits (372), Expect = 2e-033 Identities = 110/388 (28%), Positives = 190/388 (48%), Gaps = 17/388 (4%) Frame = +3 Query: 567 RPSASPWGSPVLFV----KKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +PS SP +P V +K+ G RM ++YK +NK V + Y P+ D L ++G Sbjct: 272 KPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKI 331 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 FS +SG+ Q+ + P TAF HYE+ V+ FGL AP+ F M+ + + Sbjct: 332 FSSFHCNSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFRVFR 391 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 F +++DDILV+S + ++H H+ ++L+ + + K + + ++FLG + + Sbjct: 392 K-FCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDE 450 Query: 1095 D*VMVDPYKIEVVKSW-ERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + +E + + + + ++ F+G+ +Y ++ + + L K++VP Sbjct: 451 GTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPW 510 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDAS--YWG--LGAALMKE----KN 1427 W+ E QK+ L P L+ P+ + I+ DAS YWG L A + E + Sbjct: 511 KWTKEDTLYMQKVKKNLQAFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTEL 570 Query: 1428 VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYL 1607 + YAS K E+NY ++D E AV+ +K++ YL V + TD+ + Y Sbjct: 571 ICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYK 630 Query: 1608 N----LRQRRWMELLKDYDITILYHPEKANVVADALSRKAGSMES 1730 R RW L Y + + N AD LSR+ + S Sbjct: 631 GDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREFNRVNS 675 >dbj|BAA84805.1| (AP000559) Similar to ORF3 protein - rice tungro bacilliform virus &RTUORFS_2 (C40785) [Oryza sativa] Length = 595 Score = 146 bits (364), Expect = 2e-032 Identities = 114/384 (29%), Positives = 194/384 (49%), Gaps = 23/384 (5%) Frame = +3 Query: 558 GFTRPSASPWGSPVLFVKKKD----GSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQG 725 G R S SP S V+ G RM I+YK+LN +++ Y +P+ +++QG Sbjct: 10 GAIRESRSPHRSAAFIVRNHAEEVRGKSRMVINYKRLNDNTIEDAYNIPNKKEWINRIQG 69 Query: 726 ACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILK 905 + FSK D +G+ Q+K+ + TAF HYE+LVM GL NAPA F M I Sbjct: 70 SKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPAIFQRKMQNIFN 129 Query: 906 PYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHV 1085 + F++++IDD+LV+S++ KEH HL I + + L K E + ++FLGH Sbjct: 130 ENQE-FILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQNGLILSKKKMEICKEKINFLGHE 188 Query: 1086 VSKD*VMVDPYKIEVVKSWERPTN-VT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQS 1262 + + + + + + + + N ++ F+GL +Y R + + +A L +++ Sbjct: 189 IGEGKIHLQEHIAKKILQFPDAMNDKKKLQQFLGLVNYARNHINNLAKLAGPLYAKLRKN 248 Query: 1263 VPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK-------- 1418 ++ E + + + + L L +E FI+ DAS G GA L + Sbjct: 249 GQRYFNSEDIKLVRLIKERVKELKPLELSLEESYFIIETDASQHGWGAILKQRPTKFSAK 308 Query: 1419 -EKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFT 1595 E+ + YAS K+ N D E+ A++ A+ ++ YL + V TD ++ + Sbjct: 309 SEEKICRYASGNYKLKTVN--NTDREIMAIINAINAFRLYLGFKEFTVRTDCEAICRYYN 366 Query: 1596 QKYLNLRQ---RRWMELLKD------YDITILYHPEKANVVADALSR 1709 Q LN ++ RRW+ L +D Y + + K N + + LSR Sbjct: 367 Q--LNSKKNSTRRWV-LFEDIITGNGYKVIFEHIKGKDNNLPEMLSR 410 >dbj|BAA84458.1| (AB030283) GAG-POL precursor [Oryza sativa] Length = 1032 Score = 146 bits (364), Expect = 2e-032 Identities = 105/415 (25%), Positives = 181/415 (43%), Gaps = 11/415 (2%) Frame = +3 Query: 414 LPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASP-WG 590 +PG+P + I+ + ++ +PI A + GF + P W Sbjct: 1 MPGIPREV-IEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWL 59 Query: 591 SPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQ 770 + + V+KK G +RMC+DY LNK K+ + LP ID + D G S +D SGYHQ Sbjct: 60 ANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQ 119 Query: 771 LKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDIL 950 ++++ +D KT+F T + Y ++ M FGL NA A + ++ + V ++DD++ Sbjct: 120 IRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVV 179 Query: 951 VYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEV 1130 V +K + L +R ++ KC F + LG +VS + +P K+ Sbjct: 180 VKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTA 239 Query: 1131 VKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKL 1310 + + + P+ V+ G + RFV L K++ W E +++F+ Sbjct: 240 ILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDF 299 Query: 1311 NTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK----------NVIAYASRQLKV 1460 LLT P+L P + ++Y A+ + L+ E+ I + S L Sbjct: 300 KKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLAD 359 Query: 1461 HERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELL 1640 + YP L ++ ++ HY G V T L + + N R +W L Sbjct: 360 SKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALEL 418 Query: 1641 KDYDIT 1658 DI+ Sbjct: 419 MSLDIS 424 Score = 107 bits (264), Expect = 9e-021 Identities = 88/308 (28%), Positives = 146/308 (46%), Gaps = 15/308 (4%) Frame = +2 Query: 2093 KQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPI--PKFKWEKIAMDFVVGF 2266 +Q F+W D + V C CQ + +P LQ +P+ P W +D V F Sbjct: 704 RQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVW---GLDMVGPF 760 Query: 2267 PKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTK 2446 K +G Y ++V +D+ +K PV VT A+ A+ + ++ GVP II+D T+ Sbjct: 761 KKAVGGYTHLFVAIDKFSKWIEAKPV-VTITADN-ARDFFINIVHRFGVPNRIITDNGTQ 818 Query: 2447 FTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE----FAGHWDSF 2614 FT +K E+ G ++ + HP ++GQ ER ++ ++A V + +AG W Sbjct: 819 FTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQ 878 Query: 2615 LPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIE-WFDAFEVRPWGTDLLRES-LDKVKC 2788 LP +S + + +PF +YG P E F++ R + + E +D + Sbjct: 879 LPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHR 938 Query: 2789 IQEKHLAAQSRKKKYVV-------QKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPR 2947 ++E AA R +Y+ + VR F+ G+ VL K+ + R KLSP Sbjct: 939 LEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR------DRHKLSPL 992 Query: 2948 YIGPFKVLKRVGEVAYELALPPG 3016 + GPF + + +Y L G Sbjct: 993 WEGPFIISEVTRPGSYRLKREDG 1015 >dbj|BAA92689.1| (AB032718) protease and reverse transcriptase-like protein [Bombyx mori] Length = 411 Score = 145 bits (361), Expect = 4e-032 Identities = 79/242 (32%), Positives = 123/242 (50%) Frame = +3 Query: 477 PISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQL 656 P+ + +AP G RPS W SP+ V KK+G R C DY+QL Sbjct: 159 PVHARARPLAPERYKIIKEEFRIMQELGICRPSKIAWASPLHIVPKKNGDLRPCGDYRQL 218 Query: 657 NKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEF 836 N + ++YP+P + L FSK+D + +H + + D+ KTA T + +EF Sbjct: 219 NAITKPDRYPIPRRHDFTYILDDKKIFSKLDINRAFHCIDVAPEDIEKTAIITPFGLFEF 278 Query: 837 LVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLRE 1016 M+FGL NAP F MN + L+ F+ ++DD+++ S+S +H HLRIV E Sbjct: 279 PKMTFGLRNAPQTFQRFMNNTVLHGLE-FLFSYLDDVIIASESPTQHNEHLRIVFERFNS 337 Query: 1017 KKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASY 1196 + KC F V FLGH VS + + K+E + ++ +P V+ +R F+G+ ++ Sbjct: 338 YGITINLDKCCFGQPKVEFLGHEVSVNGITPLKNKVEAIINFPKPETVSDLRRFLGMVNF 397 Query: 1197 YR 1202 YR Sbjct: 398 YR 399 >emb|CAA29527.1| (X06166) ORF V (AA 1-666) [Figwort mosaic virus] Length = 666 Score = 145 bits (361), Expect = 4e-032 Identities = 107/384 (27%), Positives = 188/384 (48%), Gaps = 17/384 (4%) Frame = +3 Query: 558 GFTRPSASPWGSPVLFVK----KKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQG 725 G PS S SP V+ ++ G RM ++YK +N+ + + + LP++ L L+G Sbjct: 266 GLIIPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRG 325 Query: 726 ACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILK 905 FS D SG+ Q+ + TAF H+++ V+ FGL AP+ F M L Sbjct: 326 KSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALN 385 Query: 906 PYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHV 1085 D F ++++DDI+V+S S +H H+ VL+++ + + K + + ++FLG Sbjct: 386 G-ADKFCMVYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLE 444 Query: 1086 VSKD*VMVDPYKIEVVKSW-ERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQS 1262 + K + +E + + +R + ++ F+G+ +Y ++ + + L K+ Sbjct: 445 IDKGTHCPQNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKD 504 Query: 1263 VPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDA--SYWG---LGAALMKEKN 1427 V W+ + +K+ L + P L LP + I+ DA S+WG AL + Sbjct: 505 VTWNWTQSDSDYVKKIKKNLGSFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDGVEL 564 Query: 1428 VIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYL 1607 + Y+S K E+NY ++D EL AV + ++ YL V+ V TD+++ Y + Sbjct: 565 ICRYSSGSFKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLR---I 621 Query: 1608 NL-------RQRRWMELLKDYDITILYHPEKANVVADALSR 1709 NL R RW Y + + NV+AD L+R Sbjct: 622 NLKGDSKQGRLVRWQNWFSKYQFDVEHLEGVKNVLADCLTR 662 >dbj|BAB03352.1| (AP002486) Similar to Oryza sativa gypsy-type retrotransposon RIRE2; GAG-POL precursor -orf2 (AB030283) Length = 1032 Score = 140 bits (350), Expect = 8e-031 Identities = 104/415 (25%), Positives = 180/415 (43%), Gaps = 11/415 (2%) Frame = +3 Query: 414 LPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASP-WG 590 +PG+P + I+ + ++ +PI A + GF + P W Sbjct: 1 MPGIPREV-IEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWL 59 Query: 591 SPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQ 770 + + V+KK G +RMC+DY LNK K+ + LP ID + D G S +D SGYHQ Sbjct: 60 ANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQ 119 Query: 771 LKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDIL 950 ++++ +D KT+F T + Y ++ M FGL NA A + ++ + V ++DD++ Sbjct: 120 IRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVV 179 Query: 951 VYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEV 1130 V +K + L +R ++ KC F + LG +VS + +P K+ Sbjct: 180 VKTKQKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTA 239 Query: 1131 VKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKL 1310 + + + P+ V+ G + RFV L K++ E +++F+ Sbjct: 240 ILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQGRPEAQKAFEDF 299 Query: 1311 NTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK----------NVIAYASRQLKV 1460 LLT P+L P + ++Y A+ + L+ E+ I + S L Sbjct: 300 KKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLAD 359 Query: 1461 HERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELL 1640 + YP L ++ ++ HY G V T L + + N R +W L Sbjct: 360 SKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALEL 418 Query: 1641 KDYDIT 1658 DI+ Sbjct: 419 MSLDIS 424 Score = 107 bits (265), Expect = 7e-021 Identities = 88/308 (28%), Positives = 146/308 (46%), Gaps = 15/308 (4%) Frame = +2 Query: 2093 KQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPI--PKFKWEKIAMDFVVGF 2266 +Q F+W D + V C CQ + +P LQ +P+ P W +D V F Sbjct: 704 RQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVW---GLDMVGPF 760 Query: 2267 PKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTK 2446 K +G Y ++V +D+ +K PV VT A+ A+ + ++ GVP II+D T+ Sbjct: 761 KKAVGGYTHLFVAIDKFSKWIEAKPV-VTITADN-ARDFFINIVHRFGVPNRIITDNGTQ 818 Query: 2447 FTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE----FAGHWDSF 2614 FT +K E+ G ++ + HP ++GQ ER ++ ++A V + +AG W Sbjct: 819 FTGEVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQ 878 Query: 2615 LPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIE-WFDAFEVRPWGTDLLRES-LDKVKC 2788 LP +S + + +PF +YG P E F++ R + + E +D + Sbjct: 879 LPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHR 938 Query: 2789 IQEKHLAAQSRKKKYVV-------QKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPR 2947 ++E AA R +Y+ + VR F+ G+ VL K+ + R KLSP Sbjct: 939 LEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR------DRHKLSPL 992 Query: 2948 YIGPFKVLKRVGEVAYELALPPG 3016 + GPF + + +Y L G Sbjct: 993 WEGPFIISEVTRPGSYRLKREDG 1015 >gb|AAG15480.1| (AF259976) polyprotein [Oryza sativa subsp. indica] Length = 567 Score = 140 bits (349), Expect = 1e-030 Identities = 104/415 (25%), Positives = 180/415 (43%), Gaps = 11/415 (2%) Frame = +3 Query: 414 LPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASP-WG 590 +PG+P + I+ + ++ +PI A + GF + P W Sbjct: 1 MPGIPREV-IEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWL 59 Query: 591 SPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQ 770 + + V+KK G +RMC+DY LNK K+ + LP ID + D G S +D SGYHQ Sbjct: 60 ANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQ 119 Query: 771 LKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDIL 950 ++++ +D KT+F T + Y ++ M FGL NA A + ++ + V ++DD++ Sbjct: 120 IRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVV 179 Query: 951 VYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEV 1130 V +K + L +R ++ K F + LG +VS + +P K+ Sbjct: 180 VKTKQKDDLISDLEETFASIRAFRMKLNPEKYIFGVPSGKLLGFMVSHRGIQANPEKVTA 239 Query: 1131 VKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKL 1310 + + + P+ V+ G + RFV L K++ W E +++F+ Sbjct: 240 ILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDF 299 Query: 1311 NTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK----------NVIAYASRQLKV 1460 LLT P+L P + ++Y A+ + L+ E+ I + S L Sbjct: 300 KKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLAD 359 Query: 1461 HERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELL 1640 + YP L ++ ++ HY G V T L + + N R +W L Sbjct: 360 SKTRYPQVRKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALEL 418 Query: 1641 KDYDIT 1658 DI+ Sbjct: 419 MSLDIS 424 >dbj|BAA95881.1| (AP002071) Similar to Lycopersicon esculentum haplotype Northern Lights Hcr9 gene cluster; polyprotein. (AF119040) [Oryza sativa] Length = 928 Score = 133 bits (332), Expect = 1e-028 Identities = 72/198 (36%), Positives = 113/198 (56%) Frame = +3 Query: 1116 YKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEE 1295 YK + + W P +V +RSF GLA YYR+FV+ + ++ LTNL ++ +W+ + E+ Sbjct: 527 YKGQTITLWPTPQSVKELRSFFGLAGYYRKFVRHYGIISKPLTNLLRKGQLYLWNSDTEQ 586 Query: 1296 SFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHERNY 1475 +FQ L L TAP+L +P + F+V DAS G+GA L+++ + IA+ SR L + Sbjct: 587 AFQTLKHALVTAPVLAMPNFDETFVVETDASDKGIGAVLIQKGHPIAFLSRALGPRHQGL 646 Query: 1476 PTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDI 1655 T+D E A++ A++ W+ YL + + TDHRSL ++ Q+ Q + + L Sbjct: 647 STYDKESLAIMLAVEHWRPYLQHAEFLIRTDHRSLSFLDDQRLTTPWQHKALTKLLGLRY 706 Query: 1656 TILYHPEKANVVADALSR 1709 I+Y N VADALSR Sbjct: 707 KIIYKKGCDNGVADALSR 724 Score = 85.0 bits (207), Expect = 4e-014 Identities = 35/94 (37%), Positives = 58/94 (61%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G Y+ +KQ F W +++ + EFV+ C CQ+ K EH G LQ +P+P+ W+ Sbjct: 811 HSGINVTYQQIKQLFAWPQLRATVTEFVSACSVCQQAKSEHVKYPGLLQTLPVPEHSWQM 870 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIP 2341 +++DF+ G P++ ++ I V+VD+ +K AHF P Sbjct: 871 VSLDFIEGLPRS-ASFNCILVVVDKFSKYAHFAP 903 >dbj|BAB02143.1| (AP000411) retroelement pol polyprotein-like [Arabidopsis thaliana] Length = 1118 Score = 129 bits (322), Expect = 1e-027 Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 4/232 (1%) Frame = +3 Query: 1119 KIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEES 1298 KI+V+ S + P +V +RS +G A +Y+RF+K FS + LT L + + D C ++ Sbjct: 507 KIDVMMSMQSPNSVKGIRSLLGHAGFYKRFIKDFSKIVRPLTQLLCKEQKFEFDDSCLQA 566 Query: 1299 FQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEKN----VIAYASRQLKVHE 1466 F + L +API+ P F V CDAS + +GA L + K+ I YASR L + Sbjct: 567 FNIIKESLVSAPIVQPPDWELPFEVMCDASDYAVGAVLRQRKDKKLHAIYYASRTLDGAQ 626 Query: 1467 RNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQKYLNLRQRRWMELLKD 1646 NY T + EL +VFA ++++ YL K V+TDH +L+Y+ ++K R RW+ LL+D Sbjct: 627 VNYATTEKELLVIVFAFEKFRSYLVRSKVIVHTDHATLRYLLSKKDAKPRLLRWILLLQD 686 Query: 1647 YDITILYHPEKANVVADALSRKAGSMESLAHSQVSRRPLAREVQTLANDLMRLEVN 1814 +D+ I N VAD LSR E + LA +++ RL V+ Sbjct: 687 FDLEIKDKKGIENGVADNLSRLRVEEEVPMRDTLPGENLASIEDCYMDEVERLRVS 742 Score = 78.4 bits (190), Expect = 4e-012 Identities = 76/256 (29%), Positives = 126/256 (48%), Gaps = 20/256 (7%) Frame = +2 Query: 2201 LQRMPIPKFKWEKI----AMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK 2368 L R IP+ + E++ +DF+ FP + G + I V VD ++K I + +A Sbjct: 805 LFRRCIPESEVEEVFDVWGIDFMGPFPSSYGN-EYILVAVDYVSKWVEAIACRKN-DAVV 862 Query: 2369 *AKLYISEVIRLHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERT 2548 KL+ + GVP +ISD F + + L + G + T +HP T GQ E + Sbjct: 863 VLKLFKKIIFPRFGVPRVVISDGGRHFINKVFANLLAKHGVNHKVATPYHPQTCGQVEIS 922 Query: 2549 IQVLEDMLRACVVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDA 2728 + ++ +L V + W + L A ++Y +Y++ I PF +YG+ C P+E Sbjct: 923 NREIKGILEKTVGKSRKDWAAKLDDALWTYRTAYKTPIGTTPFNLIYGKSCHLPVE---- 978 Query: 2729 FEVRP-WGTDLL--------RESLDKVKCIQEKHLAA-------QSRKKKYVVQKVRDFE 2860 E + W T L+ L ++ + E HL A + R K +K+ + Sbjct: 979 LEYKALWATKLMNFDIKPAAERRLVQLNELDEIHLNAYESSRIYKERTKAIHDKKIILRQ 1038 Query: 2861 FMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKV 2968 F EG++VLL S +K GKL ++ GPF + Sbjct: 1039 FTEGDKVLLFNSRLKIF-----PGKLRSKWSGPFVI 1069 >gb|AAF08289.1|AF190123_3 (AF190123) polyprotein [tobacco vein-clearing virus] Length = 635 Score = 127 bits (316), Expect = 7e-027 Identities = 108/385 (28%), Positives = 179/385 (46%), Gaps = 17/385 (4%) Frame = +3 Query: 561 FTRPSASPWGSPVLFVKK----KDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGA 728 + + S S SP V K K G RM IDY+ LN YP+P+ Q+QG Sbjct: 233 YIQESNSKHTSPAFIVNKHSEQKRGKSRMVIDYRNLNAKTKTYNYPIPNKILKIRQIQGY 292 Query: 729 CTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKP 908 FSK D SG++ LK+ TAF YE+ V+ FG NAP + M+ Sbjct: 293 NYFSKFDCKSGFYHLKLEDESKKLTAFTVPQGFYEWNVLPFGYKNAPGRYQHFMDNYFNQ 352 Query: 909 YLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVV 1088 + I++IDDIL+YS++ EH L ++ + +K E + + FLG + Sbjct: 353 LEN--CIVYIDDILLYSRTQDEHIKLLEKFAHIIENSGISLSKTKAEIMKNQIEFLGIQI 410 Query: 1089 SKD*VMVDPYKIE-VVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSV 1265 K+ + + + ++ ++ E ++SF+G+ + R ++ + L K+ V Sbjct: 411 DKNGIKMQTHIVQKIINLDENIDTKKKLQSFLGIVNQVREYIPKLAENLKPLQKKLKKDV 470 Query: 1266 PSVWSDECEESFQKLNTLLTTAPILNLPVEGKNF--IVYCDASYWGLGAALM----KEK- 1424 + ++ +E +K+ L P L P E K F IV D+S + G L KEK Sbjct: 471 EYSFDEKDKEQIKKIKILCKKLPKLYFPDENKKFTYIVETDSSNYSYGGVLKYRYNKEKI 530 Query: 1425 -NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQK 1601 + Y S + + + EL A+ L ++ Y+ + V TD+ +++ T+K Sbjct: 531 EHHCRYYSGSYTEPQEKWEINRKELFALYKCLLAFEPYIVYTRFIVRTDNTQVKWWITRK 590 Query: 1602 ----YLNLRQRRWMELLKDYDITILYHPEKANVVADALSRKA 1715 RR + + ++ TI NVVAD LSR++ Sbjct: 591 VQDSVTTKEIRRLVLNILNFTFTIEIINTNKNVVADYLSRQS 632 >gb|AAC02594.1| (AF045643) contains similarity to the retroviral aspartyl proteases and reverse transcriptase Pfam models (scores: 24.06 and 39.01) [Caenorhabditis elegans] Length = 1419 Score = 126 bits (313), Expect = 2e-026 Identities = 71/210 (33%), Positives = 112/210 (52%), Gaps = 7/210 (3%) Frame = +3 Query: 1080 HVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQ 1259 H ++ D + ++ + + P NV VR F+G++ ++R+F+ FS +A LT T++ Sbjct: 865 HEINADNYKPNRINVDAIVNLPTPRNVGDVRRFIGMSGFFRKFLPNFSEIAEPLTRFTRK 924 Query: 1260 SVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALM-------K 1418 VW E +++ L L + PIL P K F ++ DAS GA LM K Sbjct: 925 GHKFVWKAEQQKAVDTLKQALISKPILVFPDYDKEFHIFTDASAVAQGAVLMQQMEDSTK 984 Query: 1419 EKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQ 1598 + IAY SR L E +P EL A++FAL+Q++ Y+ + +++DHR Y+ + Sbjct: 985 DYAAIAYTSRTLSDTESRWPAIQTELGAIIFALRQFRPYIGQSRTTIHSDHRPPMYLLGK 1044 Query: 1599 KYLNLRQRRWMELLKDYDITILYHPEKANVVADALSR 1709 +N RW+ L YD I++ K N VAD LSR Sbjct: 1045 SKVNDNLARWLIELAQYDTRIVHIDGKKNTVADCLSR 1081 Score = 82.7 bits (201), Expect = 2e-013 Identities = 33/76 (43%), Positives = 56/76 (73%) Frame = +3 Query: 573 SASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDF 752 S +PW SP++ +KKK+GS R+C+D+++LN+V V + YPLP ID++ +Q+ G+ F+ +D Sbjct: 788 SNTPWTSPIVLIKKKNGSLRVCLDFRKLNEVTVPDNYPLPRIDSIIEQIGGSKYFTSLDM 847 Query: 753 SSGYHQLKIRATDVPK 800 ++GY QL++ A K Sbjct: 848 ANGYLQLRLDAESSDK 863 Score = 58.9 bits (140), Expect = 3e-006 Identities = 45/188 (23%), Positives = 82/188 (42%), Gaps = 9/188 (4%) Frame = +2 Query: 2408 GVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVV 2587 G P ++SDR + FTS ++ +L + L +H +G +ERT + +M+ V Sbjct: 1121 GTPSQLVSDRASTFTSEAFRAFCRKLEIQQHLAIPYHSKGNGATERTFRTFHNMVSKHVN 1180 Query: 2588 EFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGR---------RCRSPIEWFDAFEVR 2740 + WD LP F YN + + PF ++GR SP + + ++ Sbjct: 1181 KTHTDWDQILPYMTFVYNTTVHDTTGETPFFLIFGRDPVFAIDKIMHPSPPKEGEEVDIP 1240 Query: 2741 PWGTDLLRESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWF 2920 W L+ K E+ L Q ++K + + + G++V + K + Sbjct: 1241 AWKEHLITTLRLARKEAAERSLKEQEARQKVANVGAKGSKIVVGDRVFFQNHKSKANL-- 1298 Query: 2921 GKRGKLSPRYIGPFKVL 2971 K+ +IG F+V+ Sbjct: 1299 --SRKMVLPWIGEFEVI 1313 >dbj|BAA89659.1| (D10032) gag-pol precursor polyprotein [Baboon endogenous virus strain M7] Length = 1727 Score = 125 bits (312), Expect = 2e-026 Identities = 112/400 (28%), Positives = 184/400 (46%), Gaps = 29/400 (7%) Frame = +3 Query: 453 IDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGS-F 629 IDL+P P+SI Y M+ G RP SPW +P+L VKK + Sbjct: 706 IDLKPTAVPVSIKQYPMSLEAHMGIRQHIIKFLELGVLRPCRSPWNTPLLPVKKPGTQDY 765 Query: 630 RMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDVPKTA 806 R D +++NK V +P+ NL L+ + ++ +D + L + A Sbjct: 766 RPVQDLREINKRTVDIHPTVPNPYNLLSTLKPDYSWYTVLDLKDAFFCLPLAPQSQELFA 825 Query: 807 F--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL----DLFVIL 932 F WTR + G N+P F ++ L + ++ ++ Sbjct: 826 FEWKDPERGISGQLTWTR--------LPQGFKNSPTLFDEALHRDLTDFRTQHPEVTLLQ 877 Query: 933 FIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVD 1112 ++DD+L+ + + K R +L+ L EK A K + V++LG+++S+ + Sbjct: 878 YVDDLLLAAPTKKACTQGTRHLLQELGEKGYRASAKKAQICQTKVTYLGYILSEGKRWLT 937 Query: 1113 PYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECE 1292 P +IE V P N VR F+G A + R ++ GF+ +A+ L LTK+S P W E + Sbjct: 938 PGRIETVARIPPPRNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESTPFTWQTEHQ 997 Query: 1293 ESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE-----KNVIAYASRQLK 1457 +F+ L L +AP L LP K F ++ D G+ ++ + K +AY S++L Sbjct: 998 LAFEALKKALLSAPALGLPDTSKPFTLFLDERQ-GIAKGVLTQKLGPWKRPVAYLSKKLD 1056 Query: 1458 VHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQK----YLNLRQRR 1625 +P +AA +K G V T H +L+ + Q N R Sbjct: 1057 PVAAGWPPCLRIMAATAMLVKDSAKLTLGQPLTVITPH-TLEAIVRQPPDRWITNARLTH 1115 Query: 1626 WMELLKDYD 1652 + LL D D Sbjct: 1116 YQALLLDTD 1124 >gb|AAA46810.1| (M26927) pol polyprotein [Gibbon ape leukemia virus] Length = 1165 Score = 125 bits (310), Expect = 4e-026 Identities = 114/419 (27%), Positives = 199/419 (47%), Gaps = 30/419 (7%) Frame = +3 Query: 375 SIVREFLDVFPT---DLPGMPPDRDID-FCIDLEPGTRPISIPSYTMAPTXXXXXXXXXX 542 SI +L +FPT + GM + ++L G P+++ Y M+ Sbjct: 137 SIDPSWLQLFPTVWAERAGMGLANQVPPVVVELRSGASPVAVRQYPMSKEAREGIRPHIQ 196 Query: 543 XXXSKGFTRPSASPWGSPVLFVKKKD-GSFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQ 716 G P SPW +P+L VKK +R D +++NK V++ +P +P+ NL Sbjct: 197 KFLDLGVLVPCRSPWNTPLLPVKKPGTNDYRPVQDLREINK-RVQDIHPTVPNPYNLLSS 255 Query: 717 LQGACT-FSKIDFSSGYHQLKIRATDVPKTAF--------------WTRYRHYEFLVMSF 851 L + T +S +D + L++ P AF WTR + Sbjct: 256 LPPSYTWYSVLDLKDAFFCLRLHPNSQPLFAFEWKDPEKGNTGQLTWTR--------LPQ 307 Query: 852 GLTNAPAAFMSLMNGILKPYLDL----FVILFIDDILVYSKSNKEHE*HLRIVLEMLREK 1019 G N+P F ++ L P+ L ++ ++DD+LV + + ++ + + +L+ L + Sbjct: 308 GFKNSPTLFDEALHRDLAPFRALNPQVVLLQYVDDLLVAAPTYEDCKKGTQKLLQELSKL 367 Query: 1020 KLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYY 1199 K + V++LG+++ + + P + V PT VR F+G A + Sbjct: 368 GYRVSAKKAQLCQREVTYLGYLLKEGKRWLTPARKATVMKIPVPTTPRQVREFLGTAGFC 427 Query: 1200 RRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYC 1379 R ++ GF+S+A+ L LTK+S+P +W++E +++F + L +AP L LP K F +Y Sbjct: 428 RLWIPGFASLAAPLYPLTKESIPFIWTEEHQQAFDHIKKALLSAPALALPDLTKPFTLYI 487 Query: 1380 DASYWGLGAALMKE-----KNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYG 1544 D G+ ++ + + +AY S++L +PT +AAV LK G Sbjct: 488 DERA-GVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAVAAVALLLKDADKLTLG 546 Query: 1545 VKCEVYTDHRSLQYVFTQKYLNLRQRRWM 1631 V H SL+ + Q RWM Sbjct: 547 QNVTVIASH-SLESIVRQP-----PDRWM 569 Score = 53.5 bits (126), Expect = 1e-004 Identities = 72/279 (25%), Positives = 112/279 (39%), Gaps = 13/279 (4%) Frame = +2 Query: 2135 EFVAQCPNCQKVK-YEHQMPGGALQRMPIPKFKWEKIAMDFVVGFPKTIG-KYDSIWVIV 2308 E +QC C G QR P WE +DF P G KY + V + Sbjct: 847 EVTSQCQACAMTNAVTTYRETGKRQRGDRPGVYWE---VDFTEIKPGRYGNKY--LLVFI 901 Query: 2309 DRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTKFTSMFWKTLHEELG 2488 D + P K T A K + E++ G+P + SD F + + L +LG Sbjct: 902 DTFSGWVEAFPTK-TETALIVCKKILEEILPRFGIPKVLGSDNGPAFVAQVSQGLATQLG 960 Query: 2489 TRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG-HWDSFLPLAEFSYNNSYQSSID 2665 L + P + GQ ER + +++ L +E G W + LPLA N+ Sbjct: 961 INWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLALLRARNT-PGRFG 1019 Query: 2666 MAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKCIQEKHLAAQSRKKKYVVQK 2845 + P+E LYG P ++ E G D D+ + HL A + + + Sbjct: 1020 LTPYEILYG----GPPPILESGET--LGPD------DRFLPVLFTHLKALEIVRTQIWDQ 1067 Query: 2846 VRD----------FEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVL 2971 +++ F G+QVL++ + L PR+ GP+ VL Sbjct: 1068 IKEVYKPGTVTIPHPFQVGDQVLVRRH---------RPSSLEPRWKGPYLVL 1110 >gb|AAB03094.1| (M65026) ORF3 [Rice tungro bacilliform virus] Length = 1675 Score = 122 bits (304), Expect = 2e-025 Identities = 99/361 (27%), Positives = 183/361 (50%), Gaps = 18/361 (4%) Frame = +3 Query: 630 RMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAF 809 R+ +YK+LN + + +PH ++ + +Q A FSK D +G+H +K++ T F Sbjct: 1240 RIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDEFKDWTTF 1299 Query: 810 WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDL-FVILFIDDILVYSKSNKEHE*H 986 Y + V FG+ NAP AF M + + DL F +L+IDDIL+ S + KEH H Sbjct: 1300 TCSEGLYTWNVCPFGIANAPCAFQRFMQ---ESFGDLKFALLYIDDILIASNNEKEHIEH 1356 Query: 987 LRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERP--TNV 1160 L+I ++E K + +L V +LG + + + + P+ ++ +K +++ + Sbjct: 1357 LKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTL 1416 Query: 1161 T*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPIL 1340 +++++GL +Y R ++K S + L T ++ +++ E K+ ++ L Sbjct: 1417 KGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPL 1476 Query: 1341 NLPVEGKNFIVYCDASYWGLGAALM---------KEKNVIAYASRQLKVHERNYPTHDLE 1493 P E I+ DAS G GA L+ + + YAS ++ + + D E Sbjct: 1477 ERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFG-EKKTWTSLDYE 1535 Query: 1494 LAAVVFALKQWKHYLYGVKCEVYTDHRSL-QYVFTQKYLNLRQRRWME----LLKD-YDI 1655 + A+ AL +++ YL + TD ++ + + T+ Y + RW++ LLKD Y Sbjct: 1536 IEAINEALNKFQIYL-DKDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDNLLKDGYKP 1594 Query: 1656 TILYHPEKANVVADALSRK 1712 T + N + + LSR+ Sbjct: 1595 TFEHIKGNKNFLPNFLSRE 1613 >emb|CAA40997.1| (X57924) ORF P194 [Rice tungro bacilliform virus] Length = 1675 Score = 122 bits (304), Expect = 2e-025 Identities = 99/361 (27%), Positives = 183/361 (50%), Gaps = 18/361 (4%) Frame = +3 Query: 630 RMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAF 809 R+ +YK+LN + + +PH ++ + +Q A FSK D +G+H +K++ T F Sbjct: 1240 RIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTF 1299 Query: 810 WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDL-FVILFIDDILVYSKSNKEHE*H 986 Y + V FG+ NAP AF M + + DL F +L+IDDIL+ S + KEH H Sbjct: 1300 TCSEGLYTWNVCPFGIANAPCAFQRFMQ---ESFGDLKFALLYIDDILIASNNEKEHIEH 1356 Query: 987 LRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERP--TNV 1160 L+I ++E K + +L V +LG + + + + P+ ++ +K +++ + Sbjct: 1357 LKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTL 1416 Query: 1161 T*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPIL 1340 +++++GL +Y R ++K S + L T ++ +++ E K+ ++ L Sbjct: 1417 KGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPL 1476 Query: 1341 NLPVEGKNFIVYCDASYWGLGAALM---------KEKNVIAYASRQLKVHERNYPTHDLE 1493 P E I+ DAS G GA L+ + + YAS ++ + + D E Sbjct: 1477 ERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFG-EKKTWTSLDYE 1535 Query: 1494 LAAVVFALKQWKHYLYGVKCEVYTDHRSL-QYVFTQKYLNLRQRRWME----LLKD-YDI 1655 + A+ AL +++ YL + TD ++ + + T+ Y + RW++ LLKD Y Sbjct: 1536 IEAINEALNKFQIYL-DKDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDNLLKDGYKP 1594 Query: 1656 TILYHPEKANVVADALSRK 1712 T + N + + LSR+ Sbjct: 1595 TFEHIKGNKNFLPNFLSRE 1613 >emb|CAB38566.1| (X51929) polyprotein [Felis silvestris] Length = 1046 Score = 122 bits (303), Expect = 2e-025 Identities = 108/404 (26%), Positives = 184/404 (44%), Gaps = 29/404 (7%) Frame = +3 Query: 441 IDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKD 620 + IDL+P P+SI Y M+ G RP SPW +P+L VKK Sbjct: 21 VPIIIDLKPTAMPVSIRQYPMSKEAHMGIQPHITRFLELGVLRPCRSPWNTPLLPVKKPG 80 Query: 621 G-SFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDV 794 +R D +++NK + +P+ NL L T ++ +D + L + Sbjct: 81 TRDYRPVQDLREVNKRTMDIHPTVPNPYNLLSTLSPDRTWYTVLDLKDAFFCLPLAPQSQ 140 Query: 795 PKTAF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL----DL 920 AF WTR + G N+P F ++ L + ++ Sbjct: 141 ELFAFEWRDPERGISGQLTWTR--------LPQGFKNSPTLFDEALHRDLTDFRTQHPEV 192 Query: 921 FVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD* 1100 ++ ++DD+L+ + + + + +L L +K A K + V++LG+++S+ Sbjct: 193 TLLQYVDDLLLAAPTKEACIRGTKHLLRELGDKGYRASAKKAQICQTKVTYLGYILSEGK 252 Query: 1101 VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWS 1280 + P +IE V P N VR F+G A + R ++ GF+ +A+ L LTK+S P W Sbjct: 253 RWLTPGRIETVAHIPPPQNPREVREFLGTAGFCRLWIPGFAELAAPLYALTKESAPFTWQ 312 Query: 1281 DECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE-----KNVIAYAS 1445 ++ + +F+ L L +AP L LP K F ++ D G+ ++ + K +AY S Sbjct: 313 EKHQSAFEALKEALLSAPALGLPDTSKPFTLFIDEKQ-GIAKGVLTQKLGPWKRPVAYLS 371 Query: 1446 RQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQK----YLNL 1613 ++L +P +AA +K G V T H +L+ + Q N Sbjct: 372 KKLDPVAAGWPPCLRIMAATAMLVKDSAKLTLGQPLTVITPH-ALEAIVRQTPDRWITNA 430 Query: 1614 RQRRWMELLKDYD 1652 R + LL D D Sbjct: 431 RLTHYQALLLDTD 443 >gb|AAD30194.1|AF113831_3 (AF113831) polyprotein P194 [Rice tungro bacilliform virus] Length = 1675 Score = 122 bits (303), Expect = 2e-025 Identities = 99/361 (27%), Positives = 183/361 (50%), Gaps = 18/361 (4%) Frame = +3 Query: 630 RMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAF 809 R+ +YK+LN + + +PH ++ + +Q A FSK D +G+H +K++ T F Sbjct: 1240 RIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTF 1299 Query: 810 WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDL-FVILFIDDILVYSKSNKEHE*H 986 Y + V FG+ NAP AF M + + DL F +L+IDDIL+ S + KEH H Sbjct: 1300 TCSEGLYTWNVCPFGIANAPCAFQRFMQ---ESFGDLKFALLYIDDILIASNNEKEHIEH 1356 Query: 987 LRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERP--TNV 1160 L+I ++E K + +L V +LG + + + + P+ ++ +K +++ + Sbjct: 1357 LKIFFNRVKEIGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTL 1416 Query: 1161 T*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPIL 1340 +++++GL +Y R ++K S + L T ++ +++ E K+ ++ L Sbjct: 1417 KGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPL 1476 Query: 1341 NLPVEGKNFIVYCDASYWGLGAALM---------KEKNVIAYASRQLKVHERNYPTHDLE 1493 P E I+ DAS G GA L+ + + YAS ++ + + D E Sbjct: 1477 ERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFG-EKKTWTSLDYE 1535 Query: 1494 LAAVVFALKQWKHYLYGVKCEVYTDHRSL-QYVFTQKYLNLRQRRWME----LLKD-YDI 1655 + A+ AL +++ YL + TD ++ + + T+ Y + RW++ LLKD Y Sbjct: 1536 IEAINEALNKFQIYL-DKDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDNLLKDGYKP 1594 Query: 1656 TILYHPEKANVVADALSRK 1712 T + N + + LSR+ Sbjct: 1595 TFEHIKGNKNFLPNFLSRE 1613 >gb|AAD30198.1|AF113832_3 (AF113832) polyprotein P194 [Rice tungro bacilliform virus] Length = 1677 Score = 122 bits (303), Expect = 2e-025 Identities = 99/361 (27%), Positives = 183/361 (50%), Gaps = 18/361 (4%) Frame = +3 Query: 630 RMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAF 809 R+ +YK+LN + + +PH ++ + +Q A FSK D +G+H +K++ T F Sbjct: 1242 RIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTF 1301 Query: 810 WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDL-FVILFIDDILVYSKSNKEHE*H 986 Y + V FG+ NAP AF M + + DL F +L+IDDIL+ S + KEH H Sbjct: 1302 TCSEGLYTWNVCPFGIANAPCAFQRFMQ---ESFGDLKFTLLYIDDILIASNNEKEHIEH 1358 Query: 987 LRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERP--TNV 1160 L+I ++E K + +L V +LG + + + + P+ ++ +K +++ + Sbjct: 1359 LKIFFNRVKEIGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTL 1418 Query: 1161 T*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPIL 1340 +++++GL +Y R ++K S + L T ++ +++ E K+ ++ L Sbjct: 1419 KGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPL 1478 Query: 1341 NLPVEGKNFIVYCDASYWGLGAALM---------KEKNVIAYASRQLKVHERNYPTHDLE 1493 P E I+ DAS G GA L+ + + YAS ++ + + D E Sbjct: 1479 ERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFG-EKKTWTSLDYE 1537 Query: 1494 LAAVVFALKQWKHYLYGVKCEVYTDHRSL-QYVFTQKYLNLRQRRWME----LLKD-YDI 1655 + A+ AL +++ YL + TD ++ + + T+ Y + RW++ LLKD Y Sbjct: 1538 IEAINEALNKFQIYL-DKDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDNLLKDGYKP 1596 Query: 1656 TILYHPEKANVVADALSRK 1712 T + N + + LSR+ Sbjct: 1597 TFEHIKGNKNFLPNFLSRE 1615 >gb|AAC27711.1| (AF076470) polyprotein [Rice tungro bacilliform virus] Length = 1675 Score = 122 bits (302), Expect = 3e-025 Identities = 99/361 (27%), Positives = 183/361 (50%), Gaps = 18/361 (4%) Frame = +3 Query: 630 RMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAF 809 R+ +YK+LN + + +PH ++ + +Q A FSK D +G+H +K++ T F Sbjct: 1240 RIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKEDFKDWTTF 1299 Query: 810 WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDL-FVILFIDDILVYSKSNKEHE*H 986 + + V FG+ NAP AF M + + DL F +L+IDDIL+ S + +EH H Sbjct: 1300 TCSEGLFTWNVCPFGIANAPCAFQRFMQ---ESFGDLKFALLYIDDILIASSNEQEHIKH 1356 Query: 987 LRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERP--TNV 1160 L+I ++E K + +L V +LG + + + + P+ +E +K +++ + + Sbjct: 1357 LKIFFNRVKEVGCVLSKRKSKMFLKEVEYLGVEIKEGKISLQPHIVEKIKRFDKSKLSTL 1416 Query: 1161 T*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPIL 1340 +++++GL +Y R ++K S + L T +S ++ E K+ ++ L Sbjct: 1417 KGLQAYLGLLNYARSYIKDLSKLVGPLYKKTGKSGQRSFNKEDWNIIFKIEREISKIKPL 1476 Query: 1341 NLPVEGKNFIVYCDASYWGLGAALM---------KEKNVIAYASRQLKVHERNYPTHDLE 1493 P E I+ DAS G GA L+ + + YAS ++ + + D E Sbjct: 1477 ERPKESDYIIIETDASEEGWGAVLLCKPDKYASKDTEKIAGYASGNFG-EKKTWTSLDYE 1535 Query: 1494 LAAVVFALKQWKHYLYGVKCEVYTDHRSL-QYVFTQKYLNLRQRRWME----LLKD-YDI 1655 + A+ AL +++ YL + TD ++ + + T+ Y + RW++ LLKD Y Sbjct: 1536 IEAINEALNKFQIYL-DKDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDNLLKDGYKP 1594 Query: 1656 TILYHPEKANVVADALSRK 1712 T + N + + LSR+ Sbjct: 1595 TFEHIKGTKNFLPNFLSRE 1613 >dbj|BAA01607.1| (D10774) 194K polypeptide [Rice tungro bacilliform virus] Length = 1675 Score = 122 bits (302), Expect = 3e-025 Identities = 99/361 (27%), Positives = 182/361 (49%), Gaps = 18/361 (4%) Frame = +3 Query: 630 RMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAF 809 R+ +YK+LN + + +PH ++ + +Q A FSK D +G+H +K++ T F Sbjct: 1240 RIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTF 1299 Query: 810 WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDL-FVILFIDDILVYSKSNKEHE*H 986 Y + V FG+ NAP AF M + + DL F +L+IDDIL+ S + KEH H Sbjct: 1300 TCSEGLYTWNVCPFGIANAPCAFQRFMQ---ESFGDLKFALLYIDDILIASNNEKEHIEH 1356 Query: 987 LRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERP--TNV 1160 L+I ++E K + +L V +LG + + + + P+ + +K +++ + Sbjct: 1357 LKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVNKIKKFDKNKLNTL 1416 Query: 1161 T*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPIL 1340 +++++GL +Y R ++K S + L T ++ +++ E K+ ++ L Sbjct: 1417 KGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPL 1476 Query: 1341 NLPVEGKNFIVYCDASYWGLGAALM---------KEKNVIAYASRQLKVHERNYPTHDLE 1493 P E I+ DAS G GA L+ + + YAS ++ + + D E Sbjct: 1477 ERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFG-EKKTWTSLDYE 1535 Query: 1494 LAAVVFALKQWKHYLYGVKCEVYTDHRSL-QYVFTQKYLNLRQRRWME----LLKD-YDI 1655 + A+ AL +++ YL + TD ++ + + T+ Y + RW++ LLKD Y Sbjct: 1536 IEAINEALNKFQIYL-DKDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDNLLKDGYKP 1594 Query: 1656 TILYHPEKANVVADALSRK 1712 T + N + + LSR+ Sbjct: 1595 TFEHIKGNKNFLPNFLSRE 1613 >gb|AAD30190.1|AF113830_3 (AF113830) polyprotein P194 [Rice tungro bacilliform virus] Length = 1677 Score = 122 bits (302), Expect = 3e-025 Identities = 99/361 (27%), Positives = 182/361 (49%), Gaps = 18/361 (4%) Frame = +3 Query: 630 RMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAF 809 R+ +YK+LN + + +PH ++ + +Q A FSK D +G+H +K++ T F Sbjct: 1242 RIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTF 1301 Query: 810 WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDL-FVILFIDDILVYSKSNKEHE*H 986 Y + V FG+ NAP AF M + + DL F +L+IDDIL+ S + KEH H Sbjct: 1302 TCSEGLYTWNVCPFGIANAPCAFQRFMQ---ESFGDLKFTLLYIDDILIASNNEKEHIEH 1358 Query: 987 LRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERP--TNV 1160 L+I ++E K + +L V +LG + + + + P+ ++ +K +++ Sbjct: 1359 LKIFFNRVKEIGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTF 1418 Query: 1161 T*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPIL 1340 +++++GL +Y R ++K S + L T ++ +++ E K+ ++ L Sbjct: 1419 KGLQAYLGLLNYARGYIKNLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPL 1478 Query: 1341 NLPVEGKNFIVYCDASYWGLGAALM---------KEKNVIAYASRQLKVHERNYPTHDLE 1493 P E I+ DAS G GA L+ + + YAS ++ + + D E Sbjct: 1479 ERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFG-EKKTWTSLDYE 1537 Query: 1494 LAAVVFALKQWKHYLYGVKCEVYTDHRSL-QYVFTQKYLNLRQRRWME----LLKD-YDI 1655 + A+ AL +++ YL + TD ++ + + T+ Y + RW++ LLKD Y Sbjct: 1538 IEAINEALNKFQIYL-DKDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDNLLKDGYKP 1596 Query: 1656 TILYHPEKANVVADALSRK 1712 T + N + + LSR+ Sbjct: 1597 TFEHIKGNKNFLPNFLSRE 1615 >emb|CAB53448.1| (AJ243730) polymerase polyprotein [Boulengerula taitanus] Length = 128 Score = 120 bits (297), Expect = 1e-024 Identities = 54/120 (45%), Positives = 75/120 (62%) Frame = +3 Query: 552 SKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGAC 731 ++G R S SPW SP + +KKKDG+ R C DY++LN + +K+ YPLP ID D L A Sbjct: 9 NQGILRKSKSPWASPAVVIKKKDGTLRFCCDYRKLNSITIKDAYPLPRIDEALDALGNAX 68 Query: 732 TFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPY 911 FS +D +SGY Q+ + D+ KTA T + +E+ M FGL NAPA+F LM ++ Y Sbjct: 69 WFSSLDLTSGYFQMGMEEDDIEKTAVTTPFGLFEWTRMPFGLCNAPASFQRLMETVMSDY 128 >emb|CAB42622.1| (AJ238747) putative polyprotein (aspartic proteinase, reverse transcriptase, ribonuclease H) [Nicotiana tabacum] Length = 636 Score = 119 bits (295), Expect = 2e-024 Identities = 104/384 (27%), Positives = 175/384 (45%), Gaps = 17/384 (4%) Frame = +3 Query: 561 FTRPSASPWGSPVLFVKK----KDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGA 728 + + S S SP V K K G RM IDY+ LN YP+P+ Q+QG Sbjct: 233 YIQESNSKHTSPAFIVNKHSEQKRGKSRMVIDYRNLNAKTKTYNYPIPNKILKIRQIQGY 292 Query: 729 CTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKP 908 FSK D SG++ LK+ TAF YE+ V+ FG NAP + M+ Sbjct: 293 NYFSKFDCKSGFYHLKLEDESKKLTAFTVPQGFYEWNVLPFGYKNAPGRYQHFMDNYFNQ 352 Query: 909 YLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVV 1088 + I++IDDIL+YS++ EH L + ++ + K E + + FLG + Sbjct: 353 LEN--CIIYIDDILLYSRTENEHIKLLEKFIHIVEISGISLSKKKAEVMKNQIEFLGIQI 410 Query: 1089 SKD*VMVDPYKIE-VVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSV 1265 K+ + + + ++ ++ E ++SF+GL + R ++ + L K+ + Sbjct: 411 DKNGIKMQTHVVQKIINLNETLDTKKKLQSFLGLVNQVREYIPKLAENLKPLQKKLKKDI 470 Query: 1266 PSVWSDECEESFQKLNTLLTTAPILNLPVEGKNF--IVYCDASYWGLGAALM------KE 1421 + ++ + QK+ + P L P E K F IV D+S G L K Sbjct: 471 EYHFDEKDKIHIQKIKNMCKKLPKLYFPDEKKQFTYIVETDSSDHSYGGVLKYKYDNEKI 530 Query: 1422 KNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQK 1601 ++ Y S + + + EL + L ++ Y+ K V TD+ +++ T+K Sbjct: 531 EHHCRYYSGSYTEPQLKWEINRKELFGLYKCLLAFEPYIVYNKFIVRTDNTQVKWWITRK 590 Query: 1602 ----YLNLRQRRWMELLKDYDITILYHPEKANVVADALSRK 1712 RR + ++++ TI NV+AD LSR+ Sbjct: 591 VQDSVTTKEIRRLVLNIQNFTFTIEVIRTDKNVIADYLSRQ 631 >dbj|BAA92417.1| (AP001366) Similar to Sorghum bicolor Gypsy-Ty3 type retrotransposon RetroSor1, polyprotein. (AF098806) [Oryza sativa] Length = 1941 Score = 118 bits (294), Expect = 3e-024 Identities = 82/263 (31%), Positives = 119/263 (45%), Gaps = 4/263 (1%) Frame = +3 Query: 372 VSIVREFLDVF---PTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXX 542 VS +R DVF P D+PG+P + I+ + + PG RP+ AP Sbjct: 767 VSFLRANADVFAWRPADMPGVPR-KVIEHRLAVRPGARPVRQKVRRQAPERQAFIREEVA 825 Query: 543 XXXSKGFTRPSASP-WGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 GF R P W + + V K +G RMCID LNK K+ YPL ID + D Sbjct: 826 RLLEAGFIREVIHPEWLANPVVVPKANGKLRMCIDNTDLNKACPKDPYPLSRIDQIVDST 885 Query: 720 QGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGI 899 G +D SGYHQ+++ D KTAF T Y + M FGL NA F Sbjct: 886 AGCDLLCFLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRIS 945 Query: 900 LKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG 1079 L + V ++DD++V +++ + L E LR ++ KC F + LG Sbjct: 946 LGSQIGRNVEAYVDDLVVKTRNQETLLSDLAETFESLRSARIKLNPDKCVFGVPAGKLLG 1005 Query: 1080 HVVSKD*VMVDPYKIEVVKSWERPTNV 1160 +VS + +P KI ++ P ++ Sbjct: 1006 FLVSARGIEANPEKIRAIERMRPPASL 1032 Score = 80.0 bits (194), Expect = 1e-012 Identities = 76/300 (25%), Positives = 135/300 (44%), Gaps = 19/300 (6%) Frame = +2 Query: 2072 TKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPI--PKFKWEKIA 2245 T + + +Q F+W D V+ V +C CQ + P ALQ +P+ P W Sbjct: 1606 TLVGKAFRQGFYWPTALNDAVDLVRRCRACQFHAKQIHQPAQALQIIPLSWPFAVW---G 1662 Query: 2246 MDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPV-KVTYNAEK*AKLYISEVIRLHGVPLP 2422 +D + F + G ++ +++ +D+ TK PV K+ ++ A +I + GVP Sbjct: 1663 LDILGPFRRASGGFEYLYIAIDKFTKWPEAYPVIKIDKHS---ALKFIKGITAQFGVPNR 1719 Query: 2423 IISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERT----IQVLEDMLRACVVE 2590 II+D T+FTS + E++G ++ + HP ++GQ ER ++ L+ + + Sbjct: 1720 IITDNGTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILRCLKTKTFNILKK 1779 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEW------------FDAFE 2734 W LP ++ + + PF +YG P E D + Sbjct: 1780 HGDSWIEELPAVLWANRITPSRATGETPFFLVYGAEAVLPSELTLRSPRAIMYCEADQDQ 1839 Query: 2735 VRPWGTDLLRESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVM 2914 +R D L E + ++ Q ++Y + VR + VL +V G+ Sbjct: 1840 LRRDDLDYLEERRRREALRAARY---QQSLRRYHQRHVRARSLCVDDLVLRRVQTCAGL- 1895 Query: 2915 WFGKRGKLSPRYIGPFKVL 2971 KLSP + GP++V+ Sbjct: 1896 -----SKLSPMWEGPYRVI 1909 >gb|AAC80264.1| (U60065) pol polyprotein [Gibbon ape leukemia virus] Length = 1127 Score = 118 bits (294), Expect = 3e-024 Identities = 113/419 (26%), Positives = 199/419 (46%), Gaps = 30/419 (7%) Frame = +3 Query: 375 SIVREFLDVFPT---DLPGMP-PDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXX 542 SI +L +FPT + GM +R ++L+ G P+++ Y M+ Sbjct: 99 SIDPSWLQLFPTVWAERAGMGLANRVPPVVVELKSGASPVAVRQYPMSKEAREGIRPHIQ 158 Query: 543 XXXSKGFTRPSASPWGSPVLFVKKKD-GSFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQ 716 G P SPW +P+L VKK +R D +++NK V++ +P +P+ NL Sbjct: 159 RFLDLGVLVPCRSPWNTPLLPVKKPGTNDYRPVQDLREINK-RVQDIHPTVPNPYNLLSS 217 Query: 717 LQGACT-FSKIDFSSGYHQLKIRATDVPKTAF--------------WTRYRHYEFLVMSF 851 L + T +S +D + LK+ AF WTR + Sbjct: 218 LPPSHTWYSVLDLKDAFFCLKLHPNSQSLFAFEWKDPEKGNTGQLTWTR--------LPQ 269 Query: 852 GLTNAPAAFMSLMNGILKPYL----DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREK 1019 G N+P F ++ L + + ++ ++DD+LV + + ++ + + +L+ L + Sbjct: 270 GFKNSPTLFDEALHRDLALFRAHNPQVKLLQYVDDLLVAAPTYQDCKEGTQKLLQELSKL 329 Query: 1020 KLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYY 1199 K + V++LG+++ + + P + V PT VR F+G A + Sbjct: 330 GYRVSAKKAQLCQKEVTYLGYLLKEGKRWLTPARKATVMKIPAPTTPRQVREFLGTAGFC 389 Query: 1200 RRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYC 1379 R ++ GF+S+A+ L LTK+S+P +W++E +++F + L +AP L LP K F +Y Sbjct: 390 RLWIPGFASMAAPLYPLTKESIPFIWTEEHQKAFDLIKKALLSAPALALPDLTKPFTLYV 449 Query: 1380 DASYWGLGAALMKE-----KNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYG 1544 D G+ ++ + + +AY S++L +PT +AAV LK G Sbjct: 450 DERA-GVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAVAAVALLLKDADKLTLG 508 Query: 1545 VKCEVYTDHRSLQYVFTQKYLNLRQRRWM 1631 V H SL+ + Q RWM Sbjct: 509 QNVTVIASH-SLESIVRQP-----PDRWM 531 Score = 52.3 bits (123), Expect = 3e-004 Identities = 51/186 (27%), Positives = 77/186 (40%), Gaps = 4/186 (2%) Frame = +2 Query: 2135 EFVAQCPNCQKVK-YEHQMPGGALQRMPIPKFKWEKIAMDFVVGFPKTIGKYDS--IWVI 2305 E +QC C G QR P WE +DF P G+Y + + V Sbjct: 809 EVTSQCQACAMTNTVTTYRETGKRQRGDRPGVYWE---VDFTEIKP---GRYGNRYLLVF 862 Query: 2306 VDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTKFTSMFWKTLHEEL 2485 +D + P K T A K + E++ G+P + SD F + + L +L Sbjct: 863 IDTFSGWVEAFPTK-TETALTVCKKILEEILPRFGIPKVLGSDNGPAFVAQVSQGLATQL 921 Query: 2486 GTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG-HWDSFLPLAEFSYNNSYQSSI 2662 G L + P + GQ ER + +++ L +E G W + LPLA N+ Sbjct: 922 GINWKLHCAYRPQSSGQVERMNRTIKETLIKLALETGGKDWVTLLPLALLRARNT-PGRF 980 Query: 2663 DMAPFEALYG 2692 + P+E LYG Sbjct: 981 GLTPYEILYG 990 >gb|AAC47491.1| (U29471) polypeptide [Nasonia vitripennis] Length = 292 Score = 118 bits (294), Expect = 3e-024 Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 2/226 (0%) Frame = +3 Query: 456 DLEPG-TRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFR 632 D++ G RPI Y ++ G R S S W SPV+ V+K DGSFR Sbjct: 65 DIDVGRARPIKQRYYPVSKILEDEMHEQVHKMLRAGIIRRSKSNWSSPVVMVRKSDGSFR 124 Query: 633 MCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFW 812 C+DY+++N V+ YPLP++D + ++Q A + +D S + Q+ + +P TAF Sbjct: 125 FCVDYRKVNAVSKIAAYPLPYMDMILRKIQHARYITALDCSGAFLQIPLTERSIPITAFT 184 Query: 813 T-RYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HL 989 +EF+ M +GL PA F L + ++ P ++ F ++DDI++ + + +H L Sbjct: 185 VPGLGLFEFVRMPYGLAGGPATFQMLADKLITPEMEPFAFAYLDDIIIATDTFSDHIKWL 244 Query: 990 RIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVV 1133 ++L+ + E L K + + V +LG +V+++ DP +++ + Sbjct: 245 TLILKRINEAGLTINRKKSKICMPEVRYLGVLVNREGCRPDPERVKPI 292 >gb|AAF15098.1| (AF151794) pol protein [Phascolarctos cinereus] Length = 1127 Score = 116 bits (287), Expect = 2e-023 Identities = 99/373 (26%), Positives = 176/373 (46%), Gaps = 26/373 (6%) Frame = +3 Query: 453 IDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKD-GSF 629 ++L+ P+++ Y M+ G P SPW +P+L VKK + Sbjct: 129 VELKSDASPVAVRQYPMSKEAREGIRPHIQRFLDLGILVPCQSPWNTPLLPVKKPGTNDY 188 Query: 630 RMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDVPKT 803 R D +++NK V++ +P +P+ NL L + T +S +D + LK+ P Sbjct: 189 RPVQDLREVNK-RVQDIHPTVPNPYNLLSSLPPSHTWYSVLDLKDAFFCLKLHPNSQPLF 247 Query: 804 AF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDL----FVI 929 AF WTR + G N+P F ++ L + L ++ Sbjct: 248 AFEWRDPEKGNTGQLTWTR--------LPQGFKNSPTLFDEALHRDLASFRALNPQVVML 299 Query: 930 LFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMV 1109 ++DD+LV + + ++ + R +L+ L + K + + V++LG+++ + Sbjct: 300 QYVDDLLVAAPTYRDCKEGTRRLLQELSKLGYRVSAKKAQLCREEVTYLGYLLKGGKRWL 359 Query: 1110 DPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDEC 1289 P + V PT VR F+G A + R ++ GF+S+A+ L LT++ VP W++ Sbjct: 360 TPARKATVMKIPTPTTPRQVREFLGTAGFCRLWIPGFASLAAPLYPLTREKVPFTWTEAH 419 Query: 1290 EESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE-----KNVIAYASRQL 1454 +E+F ++ L +AP L LP K F +Y D G+ ++ + + +AY S++L Sbjct: 420 QEAFGRIKEALLSAPALALPDLTKPFALYVDEKE-GVARGVLTQTLGPWRRPVAYLSKKL 478 Query: 1455 KVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH 1571 +PT +AAV LK G V H Sbjct: 479 DPVASGWPTCLKAIAAVALLLKDADKLTLGQNVLVIAPH 517 Score = 53.1 bits (125), Expect = 2e-004 Identities = 75/305 (24%), Positives = 125/305 (40%), Gaps = 8/305 (2%) Frame = +2 Query: 2057 THPGATKMYRDL-KQHFWWSRMKRDIVEFVAQCPNCQKVKY--EHQMPGGALQRMPIPKF 2227 TH G K+ + + + F ++ + E ++C C ++ PG QR P Sbjct: 782 THLGPDKLLQLVGRTSFHIPNLQSVVREITSKCQVCAVTNAVTTYREPGRR-QRGDRPGV 840 Query: 2228 KWEKIAMDFVVGFPKTIGKYDS--IWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIR 2401 WE +DF P G+Y + + V +D + P K T A K + E++ Sbjct: 841 YWE---VDFTEVKP---GRYGNRYLLVFIDTFSGWVEAFPTK-TETALTVCKKILEEILP 893 Query: 2402 LHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRAC 2581 G+P + SD F + + L +LG L + P + GQ ER + +++ L Sbjct: 894 RFGIPKVLGSDNGPAFVAQVSQGLATQLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKL 953 Query: 2582 VVEFAG-HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDL 2758 +E G W + LPLA N+ + P+E L+G P + EV D Sbjct: 954 ALETGGKDWVTLLPLALLRARNT-PGQFGLTPYEILHG----GPPPVLASGEVVGSNGDF 1008 Query: 2759 LRESLDKVKCIQEKHLAAQSR-KKKYVVQKVR-DFEFMEGEQVLLKVSPMKGVMWFGKRG 2932 +K ++ + K+ Y V F G++VL++ + G Sbjct: 1009 FPVLFTHLKALEVVRTQIWDQIKEAYRPGTVAIPHPFQVGDRVLVRRH---------RSG 1059 Query: 2933 KLSPRYIGPFKVL 2971 L PR+ GP+ VL Sbjct: 1060 SLEPRWKGPYLVL 1072 >gb|AAC47493.1| (U29472) polyprotein [Nasonia vitripennis] Length = 281 Score = 115 bits (286), Expect = 2e-023 Identities = 64/214 (29%), Positives = 113/214 (51%), Gaps = 2/214 (0%) Frame = +3 Query: 456 DLEPGT-RPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFR 632 D++ G+ RPI Y ++ G R S S W SPV+ V+K DGSFR Sbjct: 65 DIDVGSARPIKQRYYPVSKILEDEMHEQVHKMLRAGIIRRSKSNWSSPVVMVRKSDGSFR 124 Query: 633 MCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFW 812 C+DY+++N V+ YPLP++D + ++Q A + +D S + Q+ + +P TAF Sbjct: 125 FCVDYRKVNAVSKIAAYPLPYMDMILRKIQHARYITALDCSGAFLQIPLTERSIPITAFT 184 Query: 813 T-RYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HL 989 +EF+ M +GL PA F L + ++ P ++ F ++DDI++ + + +H L Sbjct: 185 VPGLGLFEFVRMPYGLAGGPATFQMLADKLITPEMEPFAFAYLDDIIIATDTFSDHIKWL 244 Query: 990 RIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD 1097 ++L+ + E L K + + V +LG +V+++ Sbjct: 245 TLILKRINEAGLTINRKKSKICMSEVRYLGVLVNRE 280 >gb|AAC47494.1| (U29473) polyprotein [Nasonia vitripennis] Length = 275 Score = 115 bits (285), Expect = 3e-023 Identities = 64/214 (29%), Positives = 113/214 (51%), Gaps = 2/214 (0%) Frame = +3 Query: 456 DLEPGT-RPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFR 632 D++ G+ RPI Y ++ G R S S W SPV+ V+K DGSFR Sbjct: 59 DIDVGSARPIKQRYYPVSKILEDEMHEQVHKMLRAGIIRRSKSNWSSPVVMVRKSDGSFR 118 Query: 633 MCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFW 812 C+DY+++N V+ YPLP++D + ++Q A + +D S + Q+ + +P TAF Sbjct: 119 FCVDYRKVNAVSKIAAYPLPYMDMILRKIQHARYITALDCSGAFLQIPLTERSIPITAFT 178 Query: 813 T-RYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HL 989 +EF+ M +GL PA F L + ++ P ++ F ++DDI++ + + +H L Sbjct: 179 VPGLGLFEFVRMPYGLAGGPATFQMLADKLITPEMEPFAFAYLDDIIIATDTFSDHIKWL 238 Query: 990 RIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD 1097 ++L+ + E L K + + V +LG +V+++ Sbjct: 239 TLILKRIHEAGLTINRKKSKICMPEVRYLGVLVNRE 274 >emb|CAB53446.1| (AJ243732) polymerase polyprotein [Bitis arietans] Length = 208 Score = 114 bits (283), Expect = 5e-023 Identities = 60/169 (35%), Positives = 90/169 (52%) Frame = +3 Query: 408 TDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPW 587 T+ +PP D I++E G R Y M P ++GF P+ S Sbjct: 34 TECNSLPPHHSTDCGIEIEQGARLPKPRMYAMTPRELQEMCIYIDTNLARGFIEPARSRV 93 Query: 588 GSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYH 767 +PVLF +KKDG R+C+DY +N V V++ YPLP + +L L ++++D Y+ Sbjct: 94 AAPVLFREKKDGGLRLCVDYCGVNAVCVEHLYPLPLLKDLLSHLATGRVYTRLDLREAYY 153 Query: 768 QLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 +++IRA D KTAF +++ VM FGL APA FM L+N +L +L Sbjct: 154 RVRIRAGDEWKTAFNCPLGSFQYRVMPFGLQGAPAVFMQLINQVLHEFL 202 >gb|AAC47492.1| (U29470) polyprotein [Nasonia vitripennis] Length = 281 Score = 114 bits (282), Expect = 7e-023 Identities = 63/214 (29%), Positives = 113/214 (52%), Gaps = 2/214 (0%) Frame = +3 Query: 456 DLEPGT-RPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFR 632 D++ G+ RPI Y ++ G R S S W SPV+ V+K DGSFR Sbjct: 65 DIDVGSARPIKQRYYPVSKILEDEMHEQVHKMLRAGIIRRSKSNWSSPVVMVRKSDGSFR 124 Query: 633 MCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFW 812 C+DY+++N V+ YPLP++D + ++Q A + +D S + Q+ + +P TAF Sbjct: 125 FCVDYRKVNAVSKIAAYPLPYMDMILRKIQHARYITALDCSGAFLQIPLTERSIPITAFT 184 Query: 813 T-RYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HL 989 +EF+ M +GL PA F L + ++ P ++ F ++DDI++ + + +H L Sbjct: 185 VPGLGLFEFVRMPYGLAGGPATFQMLADKLITPEMEPFAFAYLDDIIIATDTFSDHIKWL 244 Query: 990 RIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD 1097 ++L+ + E L K + + V +LG +++++ Sbjct: 245 TLILKRINEAGLTINRKKSKICMPEVRYLGVLMNRE 280 >emb|CAB53471.1| (AJ243733) polymerase polyprotein [Lampetra fluviatilis] Length = 429 Score = 111 bits (276), Expect = 4e-022 Identities = 53/142 (37%), Positives = 80/142 (56%) Frame = +3 Query: 477 PISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQL 656 P+ + + ++P PS+SPWG+P++ VKK+DGS R C+D+++L Sbjct: 278 PVRLNPFRLSPVEKEHVQSAVNDMLEADIISPSSSPWGAPIVLVKKQDGSLRFCVDFRRL 337 Query: 657 NKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEF 836 NK++V + YPLP +D D L GA FS +D SG+ QL + PKTAF T ++F Sbjct: 338 NKISVADAYPLPRMDESLDALSGARYFSTLDLLSGFWQLPLDEESKPKTAFRTPGGLFQF 397 Query: 837 LVMSFGLTNAPAAFMSLMNGIL 902 + GL ++PA F LM +L Sbjct: 398 NRLPMGLHSSPATFQRLMELVL 419 >dbj|BAA99536.1| (AP002484) putative gypsy-type retrotransposon RIRE2 GAG-POL precursor [Oryza sativa] Length = 1032 Score = 107 bits (265), Expect = 7e-021 Identities = 88/308 (28%), Positives = 146/308 (46%), Gaps = 15/308 (4%) Frame = +2 Query: 2093 KQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPI--PKFKWEKIAMDFVVGF 2266 +Q F+W D + V C CQ + +P LQ +P+ P W +D V F Sbjct: 704 RQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVW---GLDMVGPF 760 Query: 2267 PKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTK 2446 K +G Y ++V +D+ +K PV VT A+ A+ + ++ GVP II+D T+ Sbjct: 761 KKAVGGYTHLFVAIDKFSKWIEAKPV-VTITADN-ARDFFINIVHRFGVPNRIITDNGTQ 818 Query: 2447 FTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE----FAGHWDSF 2614 FT +K E+ G ++ + HP ++GQ ER ++ ++A V + +AG W Sbjct: 819 FTGEVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQ 878 Query: 2615 LPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIE-WFDAFEVRPWGTDLLRES-LDKVKC 2788 LP +S + + +PF +YG P E F++ R + + E +D + Sbjct: 879 LPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHR 938 Query: 2789 IQEKHLAAQSRKKKYVV-------QKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPR 2947 ++E AA R +Y+ + VR F+ G+ VL K+ + R KLSP Sbjct: 939 LEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR------DRHKLSPL 992 Query: 2948 YIGPFKVLKRVGEVAYELALPPG 3016 + GPF + + +Y L G Sbjct: 993 WEGPFIISEVTRPGSYRLKREDG 1015 >emb|CAB38458.1| (AL035631) BACN32G13.a [Drosophila melanogaster] Length = 889 Score = 107 bits (264), Expect = 9e-021 Identities = 58/140 (41%), Positives = 88/140 (62%), Gaps = 2/140 (1%) Frame = +3 Query: 1293 ESFQKLNTLLTTAPI-LNLPVEGKNFIVYCDASYWGLGAALMKEKNVIAYASRQLKVHER 1469 E+FQKL +L + + L+ P K F + DAS +G+GA L +E I SR LK E Sbjct: 481 EAFQKLRNILASEDVMLSYPDYKKPFDLTTDASAYGIGAVLSQEGRPITMISRTLKGSEA 540 Query: 1470 NYPTHDLELAAVVFALKQWKHYLYGVK-CEVYTDHRSLQYVFTQKYLNLRQRRWMELLKD 1646 NY T++ EL A+V+AL + +HYLYGVK ++TDH+ L + ++ N + +RW + + Sbjct: 541 NYATNERELLAIVWALVKLRHYLYGVKDINIFTDHQPLTFSVSESNPNAKIKRWKARIDE 600 Query: 1647 YDITILYHPEKANVVADALSRK 1712 ++ + Y P K N+VADALSR+ Sbjct: 601 FNARLFYKPGKENLVADALSRQ 622 Score = 88.5 bits (216), Expect = 4e-015 Identities = 48/138 (34%), Positives = 79/138 (56%), Gaps = 6/138 (4%) Frame = +3 Query: 573 SASPWGSPVLFVKKK------DGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 SASP+ +P+ V KK + R+ ID+++LN+ + +KYP+P+I + L Sbjct: 337 SASPY-NPIWVVDKKGTDDTGNRKKRLMIDFRKLNEHTIPDKYPMPNISMILGNLGKERY 395 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 FS +D SGYHQ+ + D KT+F YEF + FGL NA F ++ IL + Sbjct: 396 FSTLDLKSGYHQVVLAERDREKTSFSVNGGKYEFKRLPFGLRNAAGIFQRTIDDILLEQI 455 Query: 915 DLFVILFIDDILVYSKSNKEHE*H 986 F +++DD++++S+ + H H Sbjct: 456 GKFCYVYVDDVIIFSQDEEAHIKH 479 >gb|AAF71196.1| (AF182203) pol protein integrase region [Pinus brutia] Length = 131 Score = 106 bits (263), Expect = 1e-020 Identities = 55/132 (41%), Positives = 78/132 (58%) Frame = +2 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 EK++MDF+ PK+ G I V+VDRL+K AHF + + A+ ++ ++ +LHG+ Sbjct: 1 EKVSMDFITSLPKS-GNKSVIMVVVDRLSKYAHFCTLPQPFTPTLVAQTFMDQIFKLHGM 59 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SDR FTS FW+ L GT++ L T +HP TDGQ+E + LE LR E Sbjct: 60 PTSIVSDRDPIFTSNFWQELFRIQGTQLKLSTSYHPQTDGQTEAVNKCLETYLRCFTSEK 119 Query: 2594 AGHWDSFLPLAE 2629 W +LPLAE Sbjct: 120 QHLWVQWLPLAE 131 >gb|AAD27548.1|AF111709_2 (AF111709) polyprotein [Oryza sativa subsp. indica] Length = 829 Score = 106 bits (262), Expect = 2e-020 Identities = 87/308 (28%), Positives = 147/308 (47%), Gaps = 15/308 (4%) Frame = +2 Query: 2093 KQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPI--PKFKWEKIAMDFVVGF 2266 +Q F+W D + V C CQ + +P LQ +P+ P W +D V F Sbjct: 501 RQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVW---GLDMVGPF 557 Query: 2267 PKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTK 2446 K +G Y ++V +D+ +K PV VT A+ A+ + ++ GVP II+D T+ Sbjct: 558 KKAVGGYTHLFVAIDKFSKWIEAKPV-VTITADN-ARDFFINIVHRFGVPNRIITDNGTQ 615 Query: 2447 FTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE----FAGHWDSF 2614 FT +K E+ G ++ + HP ++GQ ER ++ ++A V + +AG W Sbjct: 616 FTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQ 675 Query: 2615 LPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIE-WFDAFEVRPWGTDLLRE----SLDK 2779 LP +S + + +PF +YG P E F++ R + + E L + Sbjct: 676 LPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVNDLHR 735 Query: 2780 VKCIQEKHLAAQSR----KKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPR 2947 ++ ++E L +R ++Y + VR F+ G+ VL K+ + R KLSP Sbjct: 736 LEKVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTR------DRHKLSPL 789 Query: 2948 YIGPFKVLKRVGEVAYELALPPG 3016 + GPF + + +Y L G Sbjct: 790 WEGPFIISEVTRPGSYRLKREDG 812 Score = 58.9 bits (140), Expect = 3e-006 Identities = 48/206 (23%), Positives = 83/206 (39%), Gaps = 10/206 (4%) Frame = +3 Query: 1041 KCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGF 1220 KC F + LG +VS + +P K+ + + + P+ V+ G + RFV Sbjct: 7 KCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRL 66 Query: 1221 SSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGL 1400 L K++ W E +++F+ LLT P+L P + ++Y A+ + Sbjct: 67 GERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVV 126 Query: 1401 GAALMKEK----------NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVK 1550 L+ E+ I + S L + YP L ++ ++ HY G Sbjct: 127 STVLVVEREEEGHVQKVQRPIYFVSEVLADSKMRYPQVQKLLYGILITTRKLSHYFQGHS 186 Query: 1551 CEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDIT 1658 V T L + + N R +W L DI+ Sbjct: 187 VTVVTSF-PLGDILYNREANGRIAKWALELMSLDIS 221 >dbj|BAA85207.1| (AP000570) ESTs C26347(C12145),AU078074(C12145) correspond to a region of the predicted gene.~Similar to prpol; Zea mays retrotransposon Cinful-1. (AF049110) [Oryza sativa] Length = 1583 Score = 105 bits (259), Expect = 4e-020 Identities = 88/308 (28%), Positives = 147/308 (47%), Gaps = 13/308 (4%) Frame = +2 Query: 2093 KQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEKIAMDFVVGFPK 2272 +Q F+W + D + V C CQ + +P LQ +P P + + + +D V F K Sbjct: 1266 RQGFFWPTVVSDAEKVVRTCEGCQFFARQIHLPAQELQTIP-PSWPFAVLGLDMVGPFKK 1324 Query: 2273 TIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTKFT 2452 G + ++V VD+ +K PV VT A+K +IS V R GVP II+D T+FT Sbjct: 1325 VTGGFTHLFVAVDKFSKWIEAKPV-VTITADKARDFFISIVHRF-GVPNRIITDNGTQFT 1382 Query: 2453 SMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE----FAGHWDSFLP 2620 +K E+ G ++ + HP ++GQ ER ++ ++A V + + G W LP Sbjct: 1383 GDVFKDFCEDFGIKICYASVAHPMSNGQVERANGMVLQGIKARVFDRLCPYDGKWVDQLP 1442 Query: 2621 LAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEW-FDAFEVRPWGTDLLRES-LDKVKCIQ 2794 +S + + +PF +YG P E F++ R + + E +D + ++ Sbjct: 1443 SVLWSLRTTPSRATGQSPFFLVYGAEAMLPSELEFESLRFRNFKEERYGEDRVDDLNRLE 1502 Query: 2795 EKHLAAQSRK-------KKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYI 2953 E AA + ++Y + V+ F+ G+ VL K+ + R KLSP + Sbjct: 1503 EAREAALIQSAWYLQGLRRYHNRNVQSRAFLVGDMVLRKIQSTR------DRHKLSPLWE 1556 Query: 2954 GPFKVLKRVGEVAYELALPPG 3016 G FK+ + +Y L G Sbjct: 1557 GLFKISEVTRPGSYRLKREDG 1577 Score = 51.9 bits (122), Expect = 4e-004 Identities = 39/165 (23%), Positives = 71/165 (42%), Gaps = 10/165 (6%) Frame = +3 Query: 1041 KCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGF 1220 KC F + LG +VS+ + +P KI + + + P++ + G + RFV Sbjct: 772 KCTFGVLSGKLLGFMVSRRGLQANPEKINAILNMKPPSSQKDFQKPTGCMAALSRFVSRL 831 Query: 1221 SSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGL 1400 L K++ W E +++F+ LLTT P+L P + ++Y A+ + Sbjct: 832 GERGMPFFKLLKKTDNFQWGPEAQQAFEDFKKLLTTPPVLASPHPQETLLLYVSATSQVV 891 Query: 1401 GAALMKEK----------NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHY 1535 ++ E+ I + S L YP L V+ +++ HY Sbjct: 892 STVMVVEREEDGHVQKVQRPIYFISEVLADSTTRYPHVQKLLYGVLITVRKLSHY 946 >dbj|BAA84632.1| (AP000492) ESTs C26347(C12145),AU078074(C12145) correspond to a region of the predicted gene.~similar to prpol; Zea mays retrotransposon Cinful-1. (AF049110) [Oryza sativa] Length = 1583 Score = 105 bits (259), Expect = 4e-020 Identities = 88/308 (28%), Positives = 147/308 (47%), Gaps = 13/308 (4%) Frame = +2 Query: 2093 KQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEKIAMDFVVGFPK 2272 +Q F+W + D + V C CQ + +P LQ +P P + + + +D V F K Sbjct: 1266 RQGFFWPTVVSDAEKVVRTCEGCQFFARQIHLPAQELQTIP-PSWPFAVLGLDMVGPFKK 1324 Query: 2273 TIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTKFT 2452 G + ++V VD+ +K PV VT A+K +IS V R GVP II+D T+FT Sbjct: 1325 VTGGFTHLFVAVDKFSKWIEAKPV-VTITADKARDFFISIVHRF-GVPNRIITDNGTQFT 1382 Query: 2453 SMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE----FAGHWDSFLP 2620 +K E+ G ++ + HP ++GQ ER ++ ++A V + + G W LP Sbjct: 1383 GDVFKDFCEDFGIKICYASVAHPMSNGQVERANGMVLQGIKARVFDRLCPYDGKWVDQLP 1442 Query: 2621 LAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEW-FDAFEVRPWGTDLLRES-LDKVKCIQ 2794 +S + + +PF +YG P E F++ R + + E +D + ++ Sbjct: 1443 SVLWSLRTTPSRATGQSPFFLVYGAEAMLPSELEFESLRFRNFKEERYGEDRVDDLNRLE 1502 Query: 2795 EKHLAAQSRK-------KKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYI 2953 E AA + ++Y + V+ F+ G+ VL K+ + R KLSP + Sbjct: 1503 EAREAALIQSAWYLQGLRRYHNRNVQSRAFLVGDMVLRKIQSTR------DRHKLSPLWE 1556 Query: 2954 GPFKVLKRVGEVAYELALPPG 3016 G FK+ + +Y L G Sbjct: 1557 GLFKISEVTRPGSYRLKREDG 1577 Score = 51.9 bits (122), Expect = 4e-004 Identities = 39/165 (23%), Positives = 71/165 (42%), Gaps = 10/165 (6%) Frame = +3 Query: 1041 KCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGF 1220 KC F + LG +VS+ + +P KI + + + P++ + G + RFV Sbjct: 772 KCTFGVLSGKLLGFMVSRRGLQANPEKINAILNMKPPSSQKDFQKPTGCMAALSRFVSRL 831 Query: 1221 SSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGL 1400 L K++ W E +++F+ LLTT P+L P + ++Y A+ + Sbjct: 832 GERGMPFFKLLKKTDNFQWGPEAQQAFEDFKKLLTTPPVLASPHPQETLLLYVSATSQVV 891 Query: 1401 GAALMKEK----------NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHY 1535 ++ E+ I + S L YP L V+ +++ HY Sbjct: 892 STVMVVEREEDGHVQKVQRPIYFISEVLADSTTRYPHVQKLLYGVLITVRKLSHY 946 >gb|AAC31805.1| (AF053745) pol polyprotein [Mus dunni endogenous virus] Length = 1203 Score = 104 bits (258), Expect = 5e-020 Identities = 101/402 (25%), Positives = 179/402 (44%), Gaps = 28/402 (6%) Frame = +3 Query: 453 IDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKD-GSF 629 ++L+ PIS+ Y M+ +G SPW +P+L V+K + Sbjct: 167 VELKADATPISVRQYPMSKEAKEGIRPHIRRLLDQGILVACQSPWNTPLLPVRKPGTNDY 226 Query: 630 RMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDVPKTA 806 R D +++NK + +P+ NL L T ++ +D + L++ A Sbjct: 227 RPVQDLREVNKRVLDIHPTVPNPYNLLSSLPPERTWYTVLDLKDAFFCLRLHPKSQLLFA 286 Query: 807 F--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL----DLFVIL 932 F WTR + G N+P F ++ L P+ L ++ Sbjct: 287 FEWRDPEGGQTGQLTWTR--------LPQGFKNSPTLFDEALHRDLAPFRAQNPQLTLLQ 338 Query: 933 FIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVD 1112 ++DD+L+ + S + + +L L K + V +LG+ + + Sbjct: 339 YVDDLLIAAASKELCQQGTERLLTELGNLGYRVSAKKAQICQTEVIYLGYTLRGGKRWLT 398 Query: 1113 PYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECE 1292 + + V PT VR F+G A + R ++ GF+++A+ L LT++ +P W +E + Sbjct: 399 EARKKTVMMIPPPTTPRQVREFLGTAGFCRLWIPGFATLAAPLYPLTREGIPFEWKEEHQ 458 Query: 1293 ESFQKLNTLLTTAPILNLPVEGKNFIVYCD----ASYWGLGAALMKEKNVIAYASRQLKV 1460 +F+ + + L TAP L LP K+F++Y D + L AL K +AY S++L Sbjct: 459 RAFEAIKSSLMTAPALALPDLTKSFVLYVDERAGIARGVLTQALGPWKRPVAYLSKKLDP 518 Query: 1461 HERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQK----YLNLRQRRW 1628 +PT +AAV +K G + V H +L+ + Q N R + Sbjct: 519 VASGWPTCLKAIAAVALLIKDADKLTMGQQVTVVAPH-ALESIVRQPPDRWMTNARMTHY 577 Query: 1629 MELLKDYDIT 1658 LL + +T Sbjct: 578 QSLLLNDRVT 587 Score = 70.2 bits (169), Expect = 1e-009 Identities = 87/305 (28%), Positives = 126/305 (40%), Gaps = 7/305 (2%) Frame = +2 Query: 2057 THPGATKMYRDLKQ-HFWWSRMKRDIVEFVAQCPNCQ--KVKYEHQMPGGALQRMPIPKF 2227 TH G KM R +K+ + +K + + C C ++ PG QR P Sbjct: 835 THLGVEKMMRLIKKSRYQVPNLKSVAQKIINSCKACAFTNATKTYKEPGKR-QRGDRPGV 893 Query: 2228 KWEKIAMDFVVGFPKTIG-KYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE +DF P G KY + V VD + P K T A+ AK E++ Sbjct: 894 YWE---VDFTEVKPGMYGNKY--LLVFVDTFSGWVEAFPTK-TETAQIVAKKIFEEILPR 947 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACV 2584 +GVP I SD F + + L +LG L + P + GQ ER + L++ L Sbjct: 948 YGVPKVIGSDNGPAFVAQVSQGLATQLGIDWKLHCAYRPQSSGQVERMNRTLKETLTKLA 1007 Query: 2585 VEFAG-HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLL 2761 +E G W + LPLA F N+ + PFE LYG P+ V G+ L Sbjct: 1008 METGGKDWVALLPLALFRARNT-PGRFGLTPFEVLYGG--PPPLIKDGGTLVPDSGSVLP 1064 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQKVR--DFEFMEGEQVLLKVSPMKGVMWFGKRGK 2935 L +K ++ + K EF G+QVL++ + G Sbjct: 1065 SSLLIHLKALKVIRTQIWDQLKTAYTPGTTAVPHEFQVGDQVLVRRH---------RTGS 1115 Query: 2936 LSPRYIGPFKVL 2971 L PR+ GP+ VL Sbjct: 1116 LEPRWKGPYLVL 1127 >gb|AAC82568.1| (AF033811) Pr180 [Moloney murine leukemia virus] Length = 1737 Score = 104 bits (257), Expect = 6e-020 Identities = 113/441 (25%), Positives = 198/441 (44%), Gaps = 33/441 (7%) Frame = +3 Query: 330 HLIDDTTQIPSIESVSIVREFLDVFP---TDLPGMP-PDRDIDFCIDLEPGTRPISIPSY 497 H + +T++ P VS+ +L FP + GM R I L+ + P+SI Y Sbjct: 666 HRLHETSKEPD---VSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQY 722 Query: 498 TMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKD-GSFRMCIDYKQLNKVNVK 674 M+ +G P SPW +P+L VKK +R D +++NK V+ Sbjct: 723 PMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNK-RVE 781 Query: 675 NKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDVPKTAF------------- 809 + +P +P+ NL L + ++ +D + L++ T P AF Sbjct: 782 DIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQL 841 Query: 810 -WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL----DLFVILFIDDILVYSKSNKE 974 WTR + G N+P F ++ L + DL ++ ++DD+L+ + S + Sbjct: 842 TWTR--------LPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELD 893 Query: 975 HE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPT 1154 + R +L+ L A K + V +LG+++ + + + E V P Sbjct: 894 CQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPK 953 Query: 1155 NVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAP 1334 +R F+G A + R ++ GF+ +A+ L LTK W + ++++Q++ L TAP Sbjct: 954 TPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAP 1013 Query: 1335 ILNLPVEGKNFIVYCDASYWGLGAALMKEK-----NVIAYASRQLKVHERNYPTHDLELA 1499 L LP K F ++ D G ++ +K +AY S++L +P +A Sbjct: 1014 ALGLPDLTKPFELFVDEKQ-GYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVA 1072 Query: 1500 AVVFALKQWKHYLYGVKCEVYTDH--RSLQYVFTQKYL-NLRQRRWMELLKDYD 1652 A+ K G + H +L ++L N R + LL D D Sbjct: 1073 AIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTD 1126 >gb|AAB64160.1| (AF010170) Pol [synthetic construct] Length = 1199 Score = 104 bits (257), Expect = 6e-020 Identities = 113/441 (25%), Positives = 198/441 (44%), Gaps = 33/441 (7%) Frame = +3 Query: 330 HLIDDTTQIPSIESVSIVREFLDVFP---TDLPGMP-PDRDIDFCIDLEPGTRPISIPSY 497 H + +T++ P VS+ +L FP + GM R I L+ + P+SI Y Sbjct: 128 HRLHETSKEPD---VSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQY 184 Query: 498 TMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKD-GSFRMCIDYKQLNKVNVK 674 M+ +G P SPW +P+L VKK +R D +++NK V+ Sbjct: 185 PMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQDLREVNK-RVE 243 Query: 675 NKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDVPKTAF------------- 809 + +P +P+ NL L + ++ +D + L++ T P AF Sbjct: 244 DIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQL 303 Query: 810 -WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL----DLFVILFIDDILVYSKSNKE 974 WTR + G N+P F ++ L + DL ++ ++DD+L+ + S + Sbjct: 304 TWTR--------LPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELD 355 Query: 975 HE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPT 1154 + R +L+ L A K + V +LG+++ + + + E V P Sbjct: 356 CQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPK 415 Query: 1155 NVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAP 1334 +R F+G A + R ++ GF+ +A+ L LTK W + ++++Q++ L TAP Sbjct: 416 TPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAP 475 Query: 1335 ILNLPVEGKNFIVYCDASYWGLGAALMKEK-----NVIAYASRQLKVHERNYPTHDLELA 1499 L LP K F ++ D G ++ +K +AY S++L +P +A Sbjct: 476 ALGLPDLTKPFELFVDEKQ-GYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVA 534 Query: 1500 AVVFALKQWKHYLYGVKCEVYTDH--RSLQYVFTQKYL-NLRQRRWMELLKDYD 1652 A+ K G + H +L ++L N R + LL D D Sbjct: 535 AIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNARMTHYQALLLDTD 588 >gb|AAC98548.1| (AF019230) pol polypeptide [Murine leukemia virus] Length = 1204 Score = 104 bits (256), Expect = 8e-020 Identities = 103/406 (25%), Positives = 181/406 (44%), Gaps = 28/406 (6%) Frame = +3 Query: 435 RDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKK 614 R I L+ + P+SI Y M+ +G P SPW +P+L VKK Sbjct: 169 RQAPLIIPLKATSSPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK 228 Query: 615 KD-GSFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRA 785 +R D +++NK V++ +P +P+ NL L + ++ +D + L++ Sbjct: 229 PGTNDYRPVQDLREVNK-RVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHP 287 Query: 786 TDVPKTAF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL--- 914 T P AF WTR + G N+P F ++ L + Sbjct: 288 TSQPLFAFEWRDPEMGISGQLTWTR--------LPQGFKNSPTLFDEALHRDLADFRIQH 339 Query: 915 -DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 DL ++ ++DD+L+ + S + + R +L++L + A K + V +LG+++ Sbjct: 340 PDLILLQYVDDLLLAATSENDCQQGTRALLQILGDLGYRASAKKAQICQKQVKYLGYLLK 399 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + + E V P +R F+G A + R ++ GF+ +A+ L LTK Sbjct: 400 EGQRWLTEARKETVMGQPIPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF 459 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE----KNVIAY 1439 W + ++++Q++ L TAP L LP K F ++ D L + + +AY Sbjct: 460 NWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQRLGPWRRPVAY 519 Query: 1440 ASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH--RSLQYVFTQKYL-N 1610 S++L +P +AA+ K G V H +L ++L N Sbjct: 520 LSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVVLAPHAVEALVKQPPDRWLSN 579 Query: 1611 LRQRRWMELLKDYD 1652 R + LL D D Sbjct: 580 ARMTHYQALLLDTD 593 >gb|AAA93092.1| (M18247) gag-pol precursor polyprotein gPr80 [Feline leukemia virus] Length = 1784 Score = 103 bits (254), Expect = 1e-019 Identities = 97/373 (26%), Positives = 168/373 (45%), Gaps = 25/373 (6%) Frame = +3 Query: 453 IDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGS-F 629 I L+ PISI Y M +G +P SPW +P+L VKK + Sbjct: 750 IQLKATATPISIRQYPMPHEAYQGIKPHIRRMLDQGILKPCQSPWNTPLLPVKKPGTKDY 809 Query: 630 RMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDVPKT 803 R D +++NK V++ +P +P+ NL L + ++ +D + L++ + Sbjct: 810 RPVQDLREVNK-RVEDIHPTVPNPYNLLSTLPPSHPWYTVLDLKDAFFCLRLHSESQLLF 868 Query: 804 AF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKP----YLDLFVI 929 AF WTR + G N+P F ++ L Y L ++ Sbjct: 869 AFEWRDPEIGLSGQLTWTR--------LPQGFKNSPTLFDEALHSDLADFRVRYPALVLL 920 Query: 930 LFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMV 1109 ++DD+L+ + + E + +LE L K A K + L V++LG+ + + Sbjct: 921 QYVDDLLLAAATRTECLEGTKALLETLGNKGYRASAKKAQICLQEVTYLGYSLKDGQRWL 980 Query: 1110 DPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDEC 1289 + E + S P N VR F+G A Y R ++ GF+ +A+ L LT+ W E Sbjct: 981 TKARKEAILSIPVPKNPRQVREFLGTAGYCRLWIPGFAELAAPLYPLTRPGTLFQWGTEQ 1040 Query: 1290 EESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE----KNVIAYASRQLK 1457 + +F+ + L ++P L LP K F ++ D + L+++ K +AY S++L Sbjct: 1041 QLAFENIRKALLSSPALGLPDITKPFELFIDENSGFAKGVLVQKLGPWKRPVAYLSKKLD 1100 Query: 1458 VHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH 1571 +P +AA+ +K G + T H Sbjct: 1101 TVASGWPPCLRMVAAIAILVKDAGKLTLGQPLTILTSH 1138 >gb|AAC31801.1| (AF052723) gag-pol precursor polyprotein gPr80 [Feline leukemia virus] Length = 1786 Score = 102 bits (253), Expect = 2e-019 Identities = 97/373 (26%), Positives = 168/373 (45%), Gaps = 25/373 (6%) Frame = +3 Query: 453 IDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGS-F 629 I L+ PISI Y M +G +P SPW +P+L VKK + Sbjct: 750 IQLKATATPISIRQYPMPHEAYQGIKPHIRRMLDQGILKPCQSPWNTPLLPVKKPGTEDY 809 Query: 630 RMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDVPKT 803 R D +++NK V++ +P +P+ NL L + ++ +D + L++ + Sbjct: 810 RPVQDLREVNK-RVEDIHPTVPNPYNLLSTLPPSHPWYTVLDLKDAFFCLRLHSESQLLF 868 Query: 804 AF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKP----YLDLFVI 929 AF WTR + G N+P F ++ L Y L ++ Sbjct: 869 AFEWRDPEIGLSGQLTWTR--------LPQGFKNSPTLFDEALHSDLADFRVRYPALVLL 920 Query: 930 LFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMV 1109 ++DD+L+ + + E + +LE L K A K + L V++LG+ + + Sbjct: 921 QYVDDLLLAAATRTECLEGTKALLETLGNKGYRASAKKAQICLQEVTYLGYSLKDGQRWL 980 Query: 1110 DPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDEC 1289 + E + S P N VR F+G A Y R ++ GF+ +A+ L LT+ W E Sbjct: 981 TKARKEAILSIPVPKNSRQVREFLGTAGYCRLWIPGFAELAAPLYPLTRPGTLFQWGTEQ 1040 Query: 1290 EESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE----KNVIAYASRQLK 1457 + +F+ + L ++P L LP K F ++ D + L+++ K +AY S++L Sbjct: 1041 QLAFEDIKKALLSSPALGLPDITKPFELFIDENSGFAKGVLVQKLGPWKRPVAYLSKKLD 1100 Query: 1458 VHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH 1571 +P +AA+ +K G + T H Sbjct: 1101 TVASGWPPCLRMVAAIAILVKDAGKLTLGQPLTILTSH 1138 >gb|AAA92679.1| (U13766) gag-pol polyprotein [Murine leukemia virus] Length = 1736 Score = 101 bits (250), Expect = 4e-019 Identities = 103/406 (25%), Positives = 183/406 (44%), Gaps = 28/406 (6%) Frame = +3 Query: 435 RDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKK 614 R I L+ + P+SI Y M+ +G P SPW +P+L VKK Sbjct: 702 RQAPLIIPLKATSTPVSIKQYPMSHEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK 761 Query: 615 KDGS-FRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRA 785 +R D +++NK V++ +P +P+ NL L + ++ +D + L++ Sbjct: 762 PGTKDYRPVQDLREVNK-RVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHP 820 Query: 786 TDVPKTAF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL--- 914 T P AF WTR + G N+P F ++ L + Sbjct: 821 TSQPLFAFEWRDPEMGISGQLTWTR--------LPQGFKNSPTLFDEALHRDLADFRIQH 872 Query: 915 -DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 DL ++ ++DD+L+ + S + + R +L+ L + A K + V +LG+++ Sbjct: 873 PDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLR 932 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + + E V P +R F+G A + R ++ GF+ +A+ L LTK Sbjct: 933 EGQRWLTEARKETVMGQPVPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF 992 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE----KNVIAY 1439 W + ++++Q++ L TAP L LP K F ++ D G AL ++ + +AY Sbjct: 993 NWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQ-GYAKALTQKLGPWRRPVAY 1051 Query: 1440 ASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH--RSLQYVFTQKYL-N 1610 S++L +P +AA+ K G + H +L ++L N Sbjct: 1052 LSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSN 1111 Query: 1611 LRQRRWMELLKDYD 1652 R + +L D D Sbjct: 1112 ARMTHYQAMLLDTD 1125 Score = 52.3 bits (123), Expect = 3e-004 Identities = 78/305 (25%), Positives = 125/305 (40%), Gaps = 9/305 (2%) Frame = +2 Query: 2057 THPGATKMYRDL---KQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQ-RMPIPK 2224 TH G KM L K ++ + + C C +V G ++ R P Sbjct: 1388 THLGYQKMKALLDRGKSPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGTRVRVRGHRPG 1447 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE +DF P G Y + V VD + P K A +K + E+ Sbjct: 1448 THWE---IDFTEVKPGLYG-YKYLLVFVDTFSGWVEAFPTK-RETARVVSKKLLEEIFPR 1502 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDML-RAC 2581 G+P + SD FTS +++ + LG L + P + GQ ER + +++ L + Sbjct: 1503 FGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLT 1562 Query: 2582 VVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPW-GTDL 2758 + W LPLA + N+ + P+E LYG P+ F E+ + + Sbjct: 1563 LATGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG---APPLVNFHDPEMSKFTNSPS 1618 Query: 2759 LRESLDKVKCIQE---KHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKR 2929 L+ L ++ +Q K LAA + + + Q V F G+ V ++ K Sbjct: 1619 LQAHLQALQAVQREVWKPLAAAYQDQ--LDQPVIPHPFRVGDTVWVRRHQTK-------- 1668 Query: 2930 GKLSPRYIGPFKVL 2971 L PR+ GP+ VL Sbjct: 1669 -NLEPRWKGPYTVL 1681 >gb|AAF71149.1| (AF152539) pol protein integrase region [Abies alba] Length = 131 Score = 101 bits (250), Expect = 4e-019 Identities = 56/132 (42%), Positives = 76/132 (57%) Frame = +2 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 EK++MDF+ G PK+ GK I +VDRLTK AHF + + A A ++ V +LHG Sbjct: 1 EKVSMDFITGLPKSEGK-SVIMAVVDRLTKYAHFCALSHPFKASTVATTFMETVQKLHGN 59 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SDR FT FW L LGT++ + +HP +DGQ+E + LE LR V + Sbjct: 60 PKIIVSDRDPIFTGHFWTELFSCLGTQLAHSSSYHPQSDGQTEIVNKCLEGYLRCFVSDK 119 Query: 2594 AGHWDSFLPLAE 2629 W +LPLAE Sbjct: 120 QTQWVRWLPLAE 131 >gb|AAA79247.1| (M87550) reverse transcriptase [Murine leukemia virus] Length = 1038 Score = 101 bits (248), Expect = 7e-019 Identities = 103/406 (25%), Positives = 180/406 (43%), Gaps = 29/406 (7%) Frame = +3 Query: 435 RDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKK 614 R I L+ + P+SI Y M+ +G P SPW +P+L VKK Sbjct: 6 RQAPLIIPLKATSTPVSIKQYPMSQEAKLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK 65 Query: 615 KD-GSFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRA 785 +R D +++NK V++ +P +P+ NL L + ++ +D + L++ Sbjct: 66 PGTNDYRPVQDLREVNK-RVEDIHPTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHP 124 Query: 786 TDVPKTAF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL--- 914 T P AF WTR + G N+P F ++ L + Sbjct: 125 TSQPLFAFEWRDPGMGISGQLTWTR--------LPQGFKNSPTLFDEALHRDLADFRIQH 176 Query: 915 -DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 DL ++ ++DDIL+ + S + + R +L L A K + V +LG+++ Sbjct: 177 PDLILLQYVDDILLAATSELDCQQGTRALLLTLGNLGYRASAKKAQLCQKQVKYLGYLLK 236 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + + E V P +R F+G A + R ++ GF+ +A+ L LTK Sbjct: 237 EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF 296 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK-----NVIA 1436 W + ++++Q++ L TAP L LP K F ++ D G ++ +K +A Sbjct: 297 NWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQ-GYAKGVLTQKLGPWRRPVA 355 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH--RSLQYVFTQKYL- 1607 Y S++L +P +AA+ K G + H +L ++L Sbjct: 356 YLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLS 415 Query: 1608 NLRQRRWMELLKDYD 1652 N R + +L D D Sbjct: 416 NARMTHYQAMLLDTD 430 Score = 51.5 bits (121), Expect = 5e-004 Identities = 77/305 (25%), Positives = 125/305 (40%), Gaps = 8/305 (2%) Frame = +2 Query: 2057 THPGATKM--YRDLKQHFWWSRMKRDIVEFVAQ-CPNCQKVKYEHQMPGGALQ-RMPIPK 2224 TH G KM D + ++ + +++VA C C +V G ++ R P Sbjct: 693 THLGYQKMKVLLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRPG 752 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE +DF P G Y + V VD + P K A +K + E+ Sbjct: 753 SHWE---IDFTEVKPGLYG-YKYLLVFVDTFSGWVEAFPTK-RETARVVSKKLLEEIFPR 807 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDML-RAC 2581 G+P + SD FTS +++ + LG L + P + GQ ER + +++ L + Sbjct: 808 FGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLT 867 Query: 2582 VVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLL 2761 + W LPLA + N+ + P+E LYG + + D + L Sbjct: 868 LAAGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAP-PPLVNFHDPDMSELTNSPSL 925 Query: 2762 RESLDKVKCIQE---KHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRG 2932 + L ++ +Q K LA R + + Q V F G+ V ++ K Sbjct: 926 QAHLQALQTVQREIWKPLAEAYRDQ--LDQPVIPHPFQIGDSVWVRRHQTK--------- 974 Query: 2933 KLSPRYIGPFKVL 2971 L PR+ GP+ VL Sbjct: 975 NLEPRWKGPYTVL 987 >gb|AAF71147.1| (AF152537) pol protein integrase region [Abies alba] Length = 131 Score = 101 bits (248), Expect = 7e-019 Identities = 57/132 (43%), Positives = 75/132 (56%) Frame = +2 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 EK++MDF+ G PK GK I V+VDRLTK AHF + + A A ++ V +LHG Sbjct: 1 EKVSMDFITGLPKPEGK-SVIMVVVDRLTKYAHFCALSHPFKASTVATHFMETVQKLHGN 59 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SDR FT FW L LGT++ + +HP +DGQ+E + LE LR V Sbjct: 60 PKIIVSDRDPIFTGHFWTELFSCLGTQLAHSSSYHPQSDGQTEIVNKGLEGYLRCYVSNK 119 Query: 2594 AGHWDSFLPLAE 2629 W +LPLAE Sbjct: 120 QAQWVRWLPLAE 131 >gb|AAA46477.1| (M93134) pol protein [Friend murine leukemia virus] Length = 1204 Score = 101 bits (248), Expect = 7e-019 Identities = 102/406 (25%), Positives = 180/406 (44%), Gaps = 29/406 (7%) Frame = +3 Query: 435 RDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKK 614 R I L + P+SI Y M+ +G P SPW +P+L VKK Sbjct: 169 RQAPLIIPLRAASTPVSIKQYPMSREARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK 228 Query: 615 KD-GSFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRA 785 +R D +++NK V++ +P +P+ NL L + ++ +D + L++ Sbjct: 229 PGTNDYRPVQDLREVNK-RVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHP 287 Query: 786 TDVPKTAF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL--- 914 T AF WTR + G N+P F ++ L + Sbjct: 288 TSQSLFAFEWRDPEMGISGQLTWTR--------LPQGFKNSPTLFDEALHRDLADFRIQH 339 Query: 915 -DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 DL ++ ++DD+L+ + S + + R +L+ L + A K + V +LG+++ Sbjct: 340 PDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLK 399 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + + E V P +R F+G A + R ++ GF+ +A+ L LTK Sbjct: 400 EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF 459 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK-----NVIA 1436 W + ++++Q++ L TAP L LP K F ++ D G ++ +K +A Sbjct: 460 KWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQ-GYAKGVLTQKLGPWRRPVA 518 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH--RSLQYVFTQKYL- 1607 Y S++L +P +AA+ K G + H +L ++L Sbjct: 519 YLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLS 578 Query: 1608 NLRQRRWMELLKDYD 1652 N R + LL D D Sbjct: 579 NARMTHYQALLLDTD 593 >emb|CAA77477.1| (Z11128) RNA-dependent DNA polymerase [Friend murine leukemia virus] Length = 1204 Score = 101 bits (248), Expect = 7e-019 Identities = 102/406 (25%), Positives = 181/406 (44%), Gaps = 29/406 (7%) Frame = +3 Query: 435 RDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKK 614 R I L+ + P+SI Y M+ +G P SPW +P+L VKK Sbjct: 169 RQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK 228 Query: 615 KD-GSFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRA 785 +R D +++NK V++ +P +P+ NL L + ++ +D + L++ Sbjct: 229 PGTNDYRPVQDLREVNK-RVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHP 287 Query: 786 TDVPKTAF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL--- 914 T AF WTR + G N+P F ++ L + Sbjct: 288 TSQSLFAFEWRDPEMGISGQLTWTR--------LPQGFKNSPTLFDEALHRDLADFRIQH 339 Query: 915 -DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 DL ++ ++DD+L+ + S + + R +L+ L + A K + V +LG+++ Sbjct: 340 PDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLK 399 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + + E V P +R F+G A + R ++ GF+ +A+ L LTK Sbjct: 400 EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF 459 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK-----NVIA 1436 W + ++++Q++ L TAP L LP K F ++ D G ++ +K +A Sbjct: 460 EWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQ-GYAKGVLTQKLGPWRRPVA 518 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH--RSLQYVFTQKYL- 1607 Y S++L +P +AA+ K G + H +L ++L Sbjct: 519 YLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLS 578 Query: 1608 NLRQRRWMELLKDYD 1652 N R + LL D D Sbjct: 579 NARMTHYQALLLDTD 593 >dbj|BAA22064.1| (D88386) gag-pol polyprotein (precursor protein) [Friend murine leukemia virus] Length = 1738 Score = 101 bits (248), Expect = 7e-019 Identities = 102/406 (25%), Positives = 180/406 (44%), Gaps = 29/406 (7%) Frame = +3 Query: 435 RDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKK 614 R I L + P+SI Y M+ +G P SPW +P+L VKK Sbjct: 703 RQAPLIIPLRAASTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK 762 Query: 615 KD-GSFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRA 785 +R D +++NK V++ +P +P+ NL L + ++ +D + L++ Sbjct: 763 PGTNDYRPVQDLREVNK-RVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHP 821 Query: 786 TDVPKTAF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL--- 914 T AF WTR + G N+P F ++ L + Sbjct: 822 TSQSLFAFEWRDPEMGISGQLTWTR--------LPQGFKNSPTLFDEALHRDLADFRIQH 873 Query: 915 -DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 DL ++ ++DD+L+ + S + + R +L+ L + A K + V +LG+++ Sbjct: 874 PDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLK 933 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + + E V P +R F+G A + R ++ GF+ +A+ L LTK Sbjct: 934 EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF 993 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK-----NVIA 1436 W + ++++Q++ L TAP L LP K F ++ D G ++ +K +A Sbjct: 994 KWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEK-TGYAKGVLTQKLGPWRRPVA 1052 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH--RSLQYVFTQKYL- 1607 Y S++L +P +AA+ K G + H +L ++L Sbjct: 1053 YLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLS 1112 Query: 1608 NLRQRRWMELLKDYD 1652 N R + LL D D Sbjct: 1113 NARMTHYQALLLDTD 1127 >gb|AAD55051.1| (AF169256) putative gag-pol polyprotein [Murine leukemia virus] Length = 1734 Score = 101 bits (248), Expect = 7e-019 Identities = 103/406 (25%), Positives = 180/406 (43%), Gaps = 29/406 (7%) Frame = +3 Query: 435 RDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKK 614 R I L+ + P+SI Y M+ +G P SPW +P+L VKK Sbjct: 702 RQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK 761 Query: 615 KD-GSFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRA 785 +R D +++NK V++ +P +P+ NL L + ++ +D + L++ Sbjct: 762 PGTNDYRPVQDLREVNK-RVEDIHPTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHP 820 Query: 786 TDVPKTAF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL--- 914 T P AF WTR + G N+P F ++ L + Sbjct: 821 TSQPLFAFEWRDPGMGISGQLTWTR--------LPQGFKNSPTLFDEALHRDLADFRIQH 872 Query: 915 -DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 DL ++ ++DDIL+ + S + + R +L L A K + V +LG+++ Sbjct: 873 PDLILLQYVDDILLAATSELDCQQGTRALLLTLGNLGYRASAKKAQLCQKQVKYLGYLLK 932 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + + E V P +R F+G A + R ++ GF+ +A+ L LTK Sbjct: 933 EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF 992 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK-----NVIA 1436 W + ++++Q++ L TAP L LP K F ++ D G ++ +K +A Sbjct: 993 NWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQ-GYAKGVLTQKLGPWRRPVA 1051 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH--RSLQYVFTQKYL- 1607 Y S++L +P +AA+ K G + H +L ++L Sbjct: 1052 YLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLS 1111 Query: 1608 NLRQRRWMELLKDYD 1652 N R + +L D D Sbjct: 1112 NARMTHYQAMLLDTD 1126 Score = 53.9 bits (127), Expect = 1e-004 Identities = 79/305 (25%), Positives = 129/305 (41%), Gaps = 9/305 (2%) Frame = +2 Query: 2057 THPGATKMYR--DLKQHFWWSRMKRDIVEFVAQ-CPNCQKVKYEHQMPGGALQ-RMPIPK 2224 TH G KM D + ++ + +++VA C C +V G ++ R P Sbjct: 1389 THLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRPG 1448 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE +DF P G Y + V VD + P K A +K + E+ Sbjct: 1449 SHWE---IDFTEVKPGLYG-YKYLLVFVDTFSGWVEAFPTK-RETARVVSKKLLEEIFPR 1503 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDML-RAC 2581 G+P + SD FTS +++ + LG L + P + GQ ER + +++ L + Sbjct: 1504 FGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLT 1563 Query: 2582 VVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPW-GTDL 2758 + W LPLA + N+ + P+E LYG P+ F E+ + + Sbjct: 1564 LAAGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFHDPEMSKFTNSPS 1620 Query: 2759 LRESLDKVKCIQE---KHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKR 2929 L+ L ++ +Q K LAA + + + Q V F G+ V ++ K Sbjct: 1621 LQAHLQALQAVQREVWKPLAAAYQDQ--LDQPVIPHPFRVGDSVWVRRHQTK-------- 1670 Query: 2930 GKLSPRYIGPFKVL 2971 L PR+ GP+ VL Sbjct: 1671 -NLEPRWKGPYTVL 1683 >gb|AAC46707.1| (U23171) Contains similarity to Pfam domain: PF00098 (zf-CCHC), Score=21.9, E-value=0.0021, N=1 [Caenorhabditis elegans] Length = 1268 Score = 101 bits (248), Expect = 7e-019 Identities = 73/248 (29%), Positives = 125/248 (49%), Gaps = 6/248 (2%) Frame = +3 Query: 585 WGSPVLFVKKKD-GSFRMCIDYK--QLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFS 755 W +P++ +KKK G R+C D+K LN +PLP +++F +L+G +S+ID Sbjct: 477 WAAPIVVIKKKGTGKIRVCADFKCSGLNAALKDEFHPLPTSEDIFSRLKGT-VYSQIDLK 535 Query: 756 SGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYLDLFVILF 935 Y Q+++ T +++L M+FGL APA+F +M+ ++ V ++ Sbjct: 536 DAYLQVELDEEAQKLAVINTHRGIFKYLRMTFGLKPAPASFQKIMDKMVSGLTG--VAVY 593 Query: 936 IDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDP 1115 DDI++ + S +EHE LR + E +E KC F V+FLG V + D Sbjct: 594 WDDIIISASSIEEHEKILRELFERFKEYGFRVSAEKCAFAQKQVTFLG-FVDEHGRRPDS 652 Query: 1116 YKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEE 1295 K E ++S + PT+ + SF+G A + R ++ A + + ++ D+ +E Sbjct: 653 KKTEAIRSMKAPTDQKQLASFLGAADWLSRMMQDHQQNADDVV------IAEIYDDDDDE 706 Query: 1296 S---FQKLNTLLTT 1328 QKLN + T Sbjct: 707 DDSIIQKLNPVTET 720 Score = 75.7 bits (183), Expect = 3e-011 Identities = 84/338 (24%), Positives = 144/338 (41%), Gaps = 7/338 (2%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGA-LQRMPIPKFKWE 2236 HPG +M + + +W + DI V C NCQ+ +MP L P+P+ W+ Sbjct: 794 HPGIVQMKQKARSFVFWRGLDSDIENMVRHCNNCQE---NSKMPRVVPLNPWPVPEAPWK 850 Query: 2237 KIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKL-YISEVIRLHGV 2413 +I +DF G Y + V+VD TK A VK+T + + + E+ +HG Sbjct: 851 RIHIDFAGPLN---GCY--LLVVVDAKTKYAE---VKLTRSISAVTTIDLLEEIFSIHGY 902 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P IISD T+ TS + + + G ++P ++G +ER + D L+ + + Sbjct: 903 PETIISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFV----DTLKRGIAKI 958 Query: 2594 AGHW---DSFLPLAEFSYNNSYQSSID-MAPFEALYGRRCRSPIEWFDAFEVRPWGTDLL 2761 G L SY N+ S+++ P E +GR+ R+ T L Sbjct: 959 KGEGSVNQQILNKFLISYRNTPHSALNGSTPAECHFGRKIRT--------------TMSL 1004 Query: 2762 RESLDKVKCIQEKHLAAQSRKKKYVVQK-VRDFEFMEGEQVLLKVSPMKGVMWFGKRGKL 2938 D+V + + Q+ K Y ++ R F ++V ++V W K G Sbjct: 1005 LMPTDRVLKVPKLTQYQQNMKHHYELRNGARAKAFQVNQKVYVQVHHGNKSQW--KHG-- 1060 Query: 2939 SPRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGD 3073 + ++ G V YE+ + + H V+ ++T +GD Sbjct: 1061 --------VIRRKFGGVLYEVQVGDRMQKSH----VNQIRTRYGD 1093 >gb|AAF71195.1| (AF182201) pol protein integrase region [Pinus brutia] Length = 131 Score = 100 bits (247), Expect = 9e-019 Identities = 54/132 (40%), Positives = 77/132 (57%) Frame = +2 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 EK++MDF+ G PK+ GK I V+VDRLTK AHF + + A + ++ + +LHG Sbjct: 1 EKVSMDFITGLPKSEGK-SVIMVVVDRLTKYAHFCALSHPFKASTVSTAFMETIQKLHGN 59 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SDR FT FW L LGT++ + +HP +DG++E + LE LR V + Sbjct: 60 PKIIVSDRDPIFTGNFWTELFSCLGTQLAHSSSYHPQSDGKTEIVNKCLEGYLRCFVSDK 119 Query: 2594 AGHWDSFLPLAE 2629 W +LPLAE Sbjct: 120 QTQWVKWLPLAE 131 >gb|AAB03091.1| (J01998) gag-pol polyprotein (tag amber codon at 2250-2252 inserts Gln in Mo-MuLV) [AKV murine leukemia virus] Length = 1734 Score = 100 bits (247), Expect = 9e-019 Identities = 94/363 (25%), Positives = 167/363 (45%), Gaps = 26/363 (7%) Frame = +3 Query: 435 RDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKK 614 R I L+ + P+SI Y M+ +G P SPW +P+L VKK Sbjct: 702 RQAPLIIPLKATSTPVSIKQYPMSQEAKLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK 761 Query: 615 KD-GSFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRA 785 +R D +++NK V++ +P +P+ NL L + ++ +D + L++ Sbjct: 762 PGTNDYRPVQDLREVNK-RVEDIHPTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHP 820 Query: 786 TDVPKTAF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL--- 914 T P AF WTR + G N+P F ++ L + Sbjct: 821 TSQPLFAFEWRDPGMGISGQLTWTR--------LPQGFKNSPTLFDEALHRDLADFRIQH 872 Query: 915 -DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 DL ++ ++DDIL+ + S + + R +L L A K + V +LG+++ Sbjct: 873 PDLILLQYVDDILLAATSELDCQQGTRALLLTLGNLGYRASAKKAQLCQKQVKYLGYLLK 932 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + + E V P +R F+G A + R ++ GF+ +A+ L LTK Sbjct: 933 EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF 992 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK-----NVIA 1436 W + ++++Q++ L TAP L LP K F ++ D G ++ +K +A Sbjct: 993 NWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQ-GYAKGVLTQKLGPWRRPVA 1051 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQ 1523 Y S++L +P L + A + L++ Sbjct: 1052 YLSKKLDPVAAGWPP-CLRMVAAIAVLRK 1079 Score = 51.2 bits (120), Expect = 7e-004 Identities = 77/305 (25%), Positives = 125/305 (40%), Gaps = 8/305 (2%) Frame = +2 Query: 2057 THPGATKMYR--DLKQHFWWSRMKRDIVEFVAQ-CPNCQKVKYEHQMPGGALQ-RMPIPK 2224 TH G KM D + ++ + +++VA C C +V G ++ R P Sbjct: 1389 THLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRPG 1448 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE +DF P G Y + V VD + P K A +K + E+ Sbjct: 1449 SHWE---IDFTEVKPGLYG-YKYLLVFVDTFSGWVEAFPTK-RETARVVSKKLLEEIFPR 1503 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDML-RAC 2581 G+P + SD FTS +++ + LG L + P + GQ ER + +++ L + Sbjct: 1504 FGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLT 1563 Query: 2582 VVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLL 2761 + W LPLA + N+ + P+E LYG + + D + L Sbjct: 1564 LAAGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAP-PPLVNFHDPDMSELTNSPSL 1621 Query: 2762 RESLDKVKCIQE---KHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRG 2932 + L ++ +Q K LA R + + Q V F G+ V ++ K Sbjct: 1622 QAHLQALQTVQREIWKPLAEAYRDQ--LDQPVIPHPFRIGDSVWVRRHQTK--------- 1670 Query: 2933 KLSPRYIGPFKVL 2971 L PR+ GP+ VL Sbjct: 1671 NLEPRWKGPYTVL 1683 >gb|AAB06450.1| (U63133) Gag-Pol polyprotein [Mus musculus] Length = 1734 Score = 100 bits (247), Expect = 9e-019 Identities = 93/362 (25%), Positives = 166/362 (45%), Gaps = 26/362 (7%) Frame = +3 Query: 435 RDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKK 614 R I L+ + P+SI Y M+ +G P SPW +P+L VKK Sbjct: 702 RQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK 761 Query: 615 KD-GSFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRA 785 +R D +++NK V++ +P +P+ NL L + ++ +D + L++ Sbjct: 762 PGTNDYRPVQDLREVNK-RVEDIHPTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHP 820 Query: 786 TDVPKTAF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL--- 914 T P AF WTR + G N+P F ++ L + Sbjct: 821 TSQPLFAFEWGDPGMGISGQLTWTR--------LPQGFKNSPTLFDEALHRDLADFRIQH 872 Query: 915 -DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 DL ++ ++DD+L+ + S + + R +L+ L A K + V +LG+++ Sbjct: 873 PDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLR 932 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + + E V P +R F+G A + R ++ GF+ +A+ L LTK Sbjct: 933 EGQRWLTEARKETVMGQPVPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF 992 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK-----NVIA 1436 W + ++++Q++ L TAP L LP K F ++ D G ++ +K +A Sbjct: 993 NWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQ-GYAKGVLTQKLGPWRRPVA 1051 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALK 1520 Y S++L +P +AA+ K Sbjct: 1052 YLSKKLDPVAAGWPPCLRMVAAIAVLTK 1079 Score = 51.5 bits (121), Expect = 5e-004 Identities = 77/305 (25%), Positives = 125/305 (40%), Gaps = 8/305 (2%) Frame = +2 Query: 2057 THPGATKMYR--DLKQHFWWSRMKRDIVEFVAQ-CPNCQKVKYEHQMPGGALQ-RMPIPK 2224 TH G KM D + ++ + +++VA C C +V G ++ R P Sbjct: 1389 THLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRPG 1448 Query: 2225 FKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRL 2404 WE +DF P G Y + V VD + P K A +K + E+ Sbjct: 1449 THWE---IDFTEVKPGLYG-YKYLLVFVDTFSGWVEAFPTK-RETARVVSKKLLEEIFPR 1503 Query: 2405 HGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDML-RAC 2581 G+P + SD FTS +++ + LG L + P + GQ ER + +++ L + Sbjct: 1504 FGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLT 1563 Query: 2582 VVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLL 2761 + W LPLA + N+ + P+E LYG + + D + L Sbjct: 1564 LAAGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAP-PPLVNFHDPDMSELTNSPSL 1621 Query: 2762 RESLDKVKCIQE---KHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRG 2932 + L ++ +Q K LA R + + Q V F G+ V ++ K Sbjct: 1622 QAHLQALQTVQREIWKPLAEAYRDR--LDQPVIPHPFRIGDSVWVRRHQTK--------- 1670 Query: 2933 KLSPRYIGPFKVL 2971 L PR+ GP+ VL Sbjct: 1671 NLEPRWKGPYTVL 1683 >gb|AAF71145.1| (AF152535) pol protein integrase region [Abies alba] Length = 131 Score = 100 bits (246), Expect = 1e-018 Identities = 56/132 (42%), Positives = 76/132 (57%) Frame = +2 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 EK++MDF+ G K+ GK I V+VDRLTK AHF + + A A ++ V +LHG Sbjct: 1 EKVSMDFITGLLKSEGK-SVIMVVVDRLTKYAHFCALSHPFQASTVATAFMEIVQKLHGN 59 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SDR FT FW L LGT++ + +HP +DGQ+E + LE LR + Sbjct: 60 PKIIVSDRNPIFTRHFWTKLFSCLGTQLAHSSSYHPQSDGQTEIVNKCLEGYLRCFASDK 119 Query: 2594 AGHWDSFLPLAE 2629 HW +LPLAE Sbjct: 120 QTHWVKWLPLAE 131 >gb|AAF71197.1| (AF182205) pol protein integrase region [Pinus brutia] Length = 131 Score = 99.5 bits (244), Expect = 2e-018 Identities = 54/132 (40%), Positives = 76/132 (56%) Frame = +2 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 EK++MDF+ G PK+ GK I V+VDRLTK AHF + + A + ++ + +LHG Sbjct: 1 EKVSMDFITGLPKSEGK-SVIMVVVDRLTKYAHFCALSHPFRASTVSTAFMETIQKLHGN 59 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+S R FT FW L LGT++ + +HP +DGQ+E + LE LR V + Sbjct: 60 PKIIVSHRDPIFTGNFWTELFSCLGTQLAHSSSYHPQSDGQTEIVKKCLEGYLRCFVSDK 119 Query: 2594 AGHWDSFLPLAE 2629 W +LPLAE Sbjct: 120 QTQWVKWLPLAE 131 >gb|AAD34536.1| (AF136491) polymerase [Murine leukemia virus] Length = 1180 Score = 99.5 bits (244), Expect = 2e-018 Identities = 92/357 (25%), Positives = 165/357 (45%), Gaps = 25/357 (7%) Frame = +3 Query: 453 IDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKD-GSF 629 I L + P+SI Y M+ +G P SPW +P L VKK + Sbjct: 170 IPLNATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPCLPVKKPGTNDY 229 Query: 630 RMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDVPKT 803 R D +++NK V++ +P +P+ NL L + ++ +D + L++ T P Sbjct: 230 RPVQDLREVNK-RVEDIHPTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLF 288 Query: 804 AF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL----DLFVI 929 AF WTR + G N+P F ++ L + DL ++ Sbjct: 289 AFEWRDPGMGISGQLTWTR--------LPQGFKNSPTLFDEALHRDLADFRIQHPDLILL 340 Query: 930 LFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMV 1109 ++DDIL+ + S + + R +L L A K + V +LG+++ + + Sbjct: 341 QYVDDILLAATSELDCQQGTRALLLTLGNLGYRASAKKAQLCQKQVKYLGYLLREGQRCL 400 Query: 1110 DPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDEC 1289 + E V+ P +R F+G A + R ++ GF+ +A+ L LTK W + Sbjct: 401 TEARKETVRGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQ 460 Query: 1290 EESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE----KNVIAYASRQLK 1457 ++++Q++ L TAP L LP K F ++ D +L ++ + +AY S++L Sbjct: 461 QKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGSLTQKLGPWRRPVAYLSKKLD 520 Query: 1458 VHERNYPTHDLELAAVVFALKQ 1523 +P L + A + L++ Sbjct: 521 PVAAGWPP-CLRMVAAIAVLRK 541 Score = 51.2 bits (120), Expect = 7e-004 Identities = 72/280 (25%), Positives = 120/280 (42%), Gaps = 7/280 (2%) Frame = +2 Query: 2132 VEFVAQ-CPNCQKVKYEHQMPGGALQ-RMPIPKFKWEKIAMDFVVGFPKTIGKYDSIWVI 2305 +++VA C C +V G ++ R P WE +DF P G Y + V Sbjct: 877 LQYVADSCTVCAQVNASKAKIGAGVRVRGHRPGTHWE---IDFTEVKPGLYG-YKYLLVF 932 Query: 2306 VDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTKFTSMFWKTLHEEL 2485 VD + P K A+ +K + ++ G+P + SD FTS +++ + L Sbjct: 933 VDTFSGWVEAFPTK-RETAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFTSQVTQSVAKLL 991 Query: 2486 GTRVDLCTEFHPHTDGQSERTIQVLEDML-RACVVEFAGHWDSFLPLAEFSYNNSYQSSI 2662 G L + P + GQ ER + +++ L + + W LPLA + N+ Sbjct: 992 GIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT-PGPH 1050 Query: 2663 DMAPFEALYGRRCRSPIEWFDAFEVRPW-GTDLLRESLDKVKCIQE---KHLAAQSRKKK 2830 + P+E LYG P+ F E+ + + L+ L ++ +Q K LAA + + Sbjct: 1051 GLTPYEILYG--LPPPLVNFHDPEMSKFTNSPSLQAHLQALQAVQREVWKPLAAAYQDQ- 1107 Query: 2831 YVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVL 2971 + Q V F G+ V ++ K L PR+ GP+ VL Sbjct: 1108 -LDQPVIPHPFRVGDTVWVRRHQTK---------NLEPRWKGPYTVL 1144 >gb|AAF71151.1| (AF152541) pol protein integrase region [Picea abies] Length = 131 Score = 98.7 bits (242), Expect = 4e-018 Identities = 54/132 (40%), Positives = 75/132 (55%) Frame = +2 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 EK++MDF++G PK GK I VI DRLTK HF + + + A ++ V +LHG Sbjct: 1 EKVSMDFIIGLPKFEGK-SVIMVIFDRLTKYTHFCALSHPFKSSTVATAFMETVQKLHGS 59 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SDR FT FW L LGT++ + +HP +DGQ++ + LE LR V + Sbjct: 60 PKIIVSDRDPIFTGHFWTKLFSCLGTQLAHSSSYHPQSDGQTDIVNKCLEGYLRYFVSDK 119 Query: 2594 AGHWDSFLPLAE 2629 W +LPLAE Sbjct: 120 QAQWFKWLPLAE 131 >gb|AAF71148.1| (AF152538) pol protein integrase region [Abies alba] Length = 131 Score = 98.7 bits (242), Expect = 4e-018 Identities = 52/132 (39%), Positives = 77/132 (57%) Frame = +2 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 EK++MDF++G PK+ GK I + VDRLTK AHF + + A + +I + ++HG Sbjct: 1 EKVSMDFIIGLPKSKGK-SVILLAVDRLTKHAHFCELSHHFKASTISIAFIETIQKIHGN 59 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SD FT FW L LGT++D + +HPH +G++E + L+ L CV + Sbjct: 60 PKIIVSDIDPIFTRQFWTKLFSFLGTKLDYISSYHPHFNGKTEIVNKCLKCYLHFCVSDK 119 Query: 2594 AGHWDSFLPLAE 2629 W +LPLAE Sbjct: 120 QIQWVKWLPLAE 131 >gb|AAB86912.1| (U94692) Pol [Rauscher murine leukemia virus] Length = 1204 Score = 98.3 bits (241), Expect = 5e-018 Identities = 101/406 (24%), Positives = 181/406 (43%), Gaps = 29/406 (7%) Frame = +3 Query: 435 RDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKK 614 R I L+ + P+SI Y ++ +G P SPW +P+L VKK Sbjct: 169 RQAPLIIPLKATSTPVSIKQYPISQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK 228 Query: 615 KDG-SFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRA 785 +R D +++NK V++ +P +P+ NL L + ++ +D + L++ Sbjct: 229 PGTHDYRPVQDLREVNK-RVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHP 287 Query: 786 TDVPKTAF--------------WTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL--- 914 T AF WTR + G N+P F ++ L + Sbjct: 288 TSQSLFAFEWRDPEMGISGQLTWTR--------LPQGFKNSPTLFDEALHRDLADFRIQH 339 Query: 915 -DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVS 1091 DL ++ ++DD+L+ + S + + R +L+ L + A K + V +LG+++ Sbjct: 340 PDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASAKKAQICQKQVKYLGYLLK 399 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + + E V P +R F+G A + R ++ GF+ +A+ L LTK Sbjct: 400 EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLF 459 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK-----NVIA 1436 W + ++++Q++ L TAP L LP K F ++ D G ++ +K +A Sbjct: 460 NWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQ-GYAKGVLTQKLGPWRRPVA 518 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH--RSLQYVFTQKYL- 1607 Y S++L +P +AA+ K G + H +L ++L Sbjct: 519 YLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLS 578 Query: 1608 NLRQRRWMELLKDYD 1652 N R + LL D D Sbjct: 579 NARMTHYQALLLDTD 593 >emb|CAB65340.1| (AJ133817) viral polypeptide [porcine endogenous retrovirus] Length = 2378 Score = 96.0 bits (235), Expect = 2e-017 Identities = 107/458 (23%), Positives = 205/458 (44%), Gaps = 28/458 (6%) Frame = +3 Query: 285 RAKKMVSKGCLAFLAHLIDDTTQI--PSIESVSIVREFLDVFP---TDLPGMPPDRDID- 446 R + V+ + L +DD ++ P ++ ++ +L+ FP + GM + + Sbjct: 630 RPEVSVNNKPITVLTLQLDDEYRLYSPQVKPDQDIQSWLEQFPQAWAETAGMGLAKQVPP 689 Query: 447 FCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKD-G 623 I L+ P+S+ Y ++ +G P SPW +P+L V+K Sbjct: 690 QVIQLKASATPVSVRQYPLSREAREGIWPHVQRLIQQGILVPVQSPWNTPLLPVRKPGTN 749 Query: 624 SFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDVP 797 +R D +++NK V++ +P +P+ NL L ++ +D + L++ T P Sbjct: 750 DYRPVQDLREVNK-RVQDIHPTVPNPYNLLSALPPERNWYTVLDLKDAFFCLRLHPTSQP 808 Query: 798 KTAF-WT-----RYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL----DLFVILFIDDI 947 AF W R + + G N+P F ++ L + + ++ ++DD+ Sbjct: 809 LFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIFDEALHRDLANFKIQHPQVTLLQYVDDL 868 Query: 948 LVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIE 1127 L+ + ++ + +L L + A K + V++LG+ + + + + Sbjct: 869 LLAGATKQDCLEGTKALLLELSDLGYRASAKKAQICRREVTYLGYSLRGGQRWLTEARKK 928 Query: 1128 VVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQK 1307 V PT VR F+G A + R ++ GF+++A+ L LTK+ W+ E +++F Sbjct: 929 TVVQIPAPTTAKQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEKGEFSWAPEHQKAFDA 988 Query: 1308 LNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE-----KNVIAYASRQLKVHERN 1472 + L +AP L LP K F +Y D G+ ++ + + +AY S++L Sbjct: 989 IKKALLSAPALALPDVTKPFTLYVDERK-GVARGVLTQTLGPWRRPVAYLSKKLDPVASG 1047 Query: 1473 YPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQK----YLNLRQRRWMELL 1640 +P +AAV +K G V H +L+ + Q N R + LL Sbjct: 1048 WPVCLKAIAAVAILVKDADKLTLGQNITVIAPH-ALENIVRQPPDRWMTNARMTHYQSLL 1106 Query: 1641 KDYDIT 1658 +T Sbjct: 1107 LTERVT 1112 >emb|CAB65339.1| (AJ133816) viral polypeptide [porcine endogenous retrovirus] Length = 2376 Score = 96.0 bits (235), Expect = 2e-017 Identities = 107/458 (23%), Positives = 205/458 (44%), Gaps = 28/458 (6%) Frame = +3 Query: 285 RAKKMVSKGCLAFLAHLIDDTTQI--PSIESVSIVREFLDVFP---TDLPGMPPDRDID- 446 R + V+ + L +DD ++ P ++ ++ +L+ FP + GM + + Sbjct: 630 RPEVSVNNKPITVLTLQLDDEYRLYSPQVKPDQDIQSWLEQFPQAWAETAGMGLAKQVPP 689 Query: 447 FCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKD-G 623 I L+ P+S+ Y ++ +G P SPW +P+L V+K Sbjct: 690 QVIQLKASATPVSVRQYPLSREAREGIWPHVQRLIQQGILVPVQSPWNTPLLPVRKPGTN 749 Query: 624 SFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDVP 797 +R D +++NK V++ +P +P+ NL L ++ +D + L++ T P Sbjct: 750 DYRPVQDLREVNK-RVQDIHPTVPNPYNLLSALPPERNWYTVLDLKDAFFCLRLHPTSQP 808 Query: 798 KTAF-WT-----RYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL----DLFVILFIDDI 947 AF W R + + G N+P F ++ L + + ++ ++DD+ Sbjct: 809 LFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIFDEALHRDLANFRIQHPQVTLLQYVDDL 868 Query: 948 LVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIE 1127 L+ + ++ + +L L + A K + V++LG+ + + + + Sbjct: 869 LLAGATKQDCLEGTKALLLELSDLGYRASAKKAQICRREVTYLGYSLRGGQRWLTEARKK 928 Query: 1128 VVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQK 1307 V PT VR F+G A + R ++ GF+++A+ L LTK+ W+ E +++F Sbjct: 929 TVVQIPAPTTAKQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEKGEFSWAPEHQKAFDA 988 Query: 1308 LNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE-----KNVIAYASRQLKVHERN 1472 + L +AP L LP K F +Y D G+ ++ + + +AY S++L Sbjct: 989 IKKALLSAPALALPDVTKPFTLYVDERK-GVARGVLTQTLGPWRRPVAYLSKKLDPVASG 1047 Query: 1473 YPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQK----YLNLRQRRWMELL 1640 +P +AAV +K G V H +L+ + Q N R + LL Sbjct: 1048 WPVCLKAIAAVAILVKDADKLTLGQNITVIAPH-ALENIVRQPPDRWMTNARMTHYQSLL 1106 Query: 1641 KDYDIT 1658 +T Sbjct: 1107 LTERVT 1112 >emb|CAB65341.1| (AJ133818) viral polyprotein [porcine endogenous retrovirus] Length = 2376 Score = 96.0 bits (235), Expect = 2e-017 Identities = 107/458 (23%), Positives = 205/458 (44%), Gaps = 28/458 (6%) Frame = +3 Query: 285 RAKKMVSKGCLAFLAHLIDDTTQI--PSIESVSIVREFLDVFP---TDLPGMPPDRDID- 446 R + V+ + L +DD ++ P ++ ++ +L+ FP + GM + + Sbjct: 630 RPEVSVNNKPITVLTLQLDDEYRLYSPQVKPDQDIQSWLEQFPQAWAETAGMGLAKQVPP 689 Query: 447 FCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKD-G 623 I L+ P+S+ Y ++ +G P SPW +P+L V+K Sbjct: 690 QVIQLKASATPVSVRQYPLSREAREGIWPHVQRLIQQGILVPVQSPWNTPLLPVRKPGTN 749 Query: 624 SFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDVP 797 +R D +++NK V++ +P +P+ NL L ++ +D + L++ T P Sbjct: 750 DYRPVQDLREVNK-RVQDIHPTVPNPYNLLSALPPERNWYTVLDLKDAFFCLRLHPTSQP 808 Query: 798 KTAF-WT-----RYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL----DLFVILFIDDI 947 AF W R + + G N+P F ++ L + + ++ ++DD+ Sbjct: 809 LFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIFDEALHRDLANFRIQHPQVTLLQYVDDL 868 Query: 948 LVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIE 1127 L+ + ++ + +L L + A K + V++LG+ + + + + Sbjct: 869 LLAGATKQDCLEGTKALLLELSDLGYRASAKKAQICRREVTYLGYSLRGGQRWLTEARKK 928 Query: 1128 VVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQK 1307 V PT VR F+G A + R ++ GF+++A+ L LTK+ W+ E +++F Sbjct: 929 TVVQIPAPTTAKQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEKGEFSWAPEHQKTFDA 988 Query: 1308 LNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE-----KNVIAYASRQLKVHERN 1472 + L +AP L LP K F +Y D G+ ++ + + +AY S++L Sbjct: 989 IKKALLSAPALALPDVTKPFTLYVDERK-GVARGVLTQTLGPWRRPVAYLSKKLDPVASG 1047 Query: 1473 YPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQK----YLNLRQRRWMELL 1640 +P +AAV +K G V H +L+ + Q N R + LL Sbjct: 1048 WPVCLKAIAAVAILVKDADKLTLGQNITVIAPH-ALENIVRQPPDRWMTNARMTHYQSLL 1106 Query: 1641 KDYDIT 1658 +T Sbjct: 1107 LTERVT 1112 >emb|CAA76582.1| (Y17013) pol [porcine endogenous retrovirus] Length = 868 Score = 96.0 bits (235), Expect = 2e-017 Identities = 107/458 (23%), Positives = 205/458 (44%), Gaps = 28/458 (6%) Frame = +3 Query: 285 RAKKMVSKGCLAFLAHLIDDTTQI--PSIESVSIVREFLDVFP---TDLPGMPPDRDID- 446 R + V+ + L +DD ++ P ++ ++ +L+ FP + GM + + Sbjct: 11 RPEVSVNNKPITVLTLQLDDEYRLYSPQVKPDQDIQSWLEQFPQAWAETAGMGLAKQVPP 70 Query: 447 FCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKD-G 623 I L+ P+S+ Y ++ +G P SPW +P+L V+K Sbjct: 71 QVIQLKASATPVSVRQYPLSREAREGIWPHVQRLIQQGILVPVQSPWNTPLLPVRKPGTN 130 Query: 624 SFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDVP 797 +R D +++NK V++ +P +P+ NL L ++ +D + L++ T P Sbjct: 131 DYRPVQDLREVNK-RVQDIHPTVPNPYNLLSALPPERNWYTVLDLKDAFFCLRLHPTSQP 189 Query: 798 KTAF-WT-----RYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL----DLFVILFIDDI 947 AF W R + + G N+P F ++ L + + ++ ++DD+ Sbjct: 190 LFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIFDEALHRDLANFRIQHPQVTLLQYVDDL 249 Query: 948 LVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIE 1127 L+ + ++ + +L L + A K + V++LG+ + + + + Sbjct: 250 LLAGATKQDCLEGTKALLLELSDLGYRASAKKAQICRREVTYLGYSLRGGQRWLTEARKK 309 Query: 1128 VVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQK 1307 V PT VR F+G A + R ++ GF+++A+ L LTK+ W+ E +++F Sbjct: 310 TVVQIPAPTTAKQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEKGEFSWAPEHQKAFDA 369 Query: 1308 LNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE-----KNVIAYASRQLKVHERN 1472 + L +AP L LP K F +Y D G+ ++ + + +AY S++L Sbjct: 370 IKKALLSAPALALPDVTKPFTLYVDERK-GVARGVLTQTLGPWRRPVAYLSKKLDPVASG 428 Query: 1473 YPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQK----YLNLRQRRWMELL 1640 +P +AAV +K G V H +L+ + Q N R + LL Sbjct: 429 WPVCLKAIAAVAILVKDADKLTLGQNITVIAPH-ALENIVRQPPDRWMTNARMTHYQSLL 487 Query: 1641 KDYDIT 1658 +T Sbjct: 488 LTERVT 493 >emb|CAB39348.1| (A66553) REVERSE TRANSCRIPTASE [porcine endogenous retrovirus] Length = 1194 Score = 95.6 bits (234), Expect = 3e-017 Identities = 107/458 (23%), Positives = 205/458 (44%), Gaps = 28/458 (6%) Frame = +3 Query: 285 RAKKMVSKGCLAFLAHLIDDTTQI--PSIESVSIVREFLDVFP---TDLPGMPPDRDID- 446 R + V+ + L +DD ++ P ++ ++ +L+ FP + GM + + Sbjct: 106 RPEVSVNNKPITVLTLQLDDEYRLYSPQVKPDQDIQSWLEQFPQAWAETAGMGLAKQVPP 165 Query: 447 FCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKD-G 623 I L+ P+S+ Y ++ +G P SPW +P+L V+K Sbjct: 166 QVIQLKASATPVSVRQYPLSREAREGIWPHVQRLIQQGILVPVQSPWNTPLLPVRKPGTN 225 Query: 624 SFRMCIDYKQLNKVNVKNKYP-LPHIDNLFDQLQGACT-FSKIDFSSGYHQLKIRATDVP 797 +R D +++NK V++ +P +P+ NL L ++ +D + L++ T P Sbjct: 226 DYRPVQDLREVNK-RVQDIHPTVPNPYNLLSALPPERNWYTVLDLKDAFFCLRLHPTSQP 284 Query: 798 KTAF-WT-----RYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL----DLFVILFIDDI 947 AF W R + + G N+P F ++ L + + ++ ++DD+ Sbjct: 285 LFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIFDEALHRDLANFRIQHPQVTLLQYVDDL 344 Query: 948 LVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSKD*VMVDPYKIE 1127 L+ + ++ + +L L + A K + V++LG+ + + + + Sbjct: 345 LLAGATKQDCLEGTKALLLELSDLGYRASAKKAQICRREVTYLGYSLRGGQRWLTEARKK 404 Query: 1128 VVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQK 1307 V PT VR F+G A + R ++ GF+++A+ L LTK+ W+ E +++F Sbjct: 405 TVVQIPAPTTAKQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEKGGFSWAPEHQKAFDA 464 Query: 1308 LNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE-----KNVIAYASRQLKVHERN 1472 + L +AP L LP K F +Y D G+ ++ + + +AY S++L Sbjct: 465 IKKALLSAPALALPDVTKPFTLYVDERK-GVARGVLTQTLGPWRRPVAYLSKKLDPVASG 523 Query: 1473 YPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVFTQK----YLNLRQRRWMELL 1640 +P +AAV +K G V H +L+ + Q N R + LL Sbjct: 524 WPVCLKAIAAVAILVKDADKLTLGQNITVIAPH-ALENIVRQPPDRWMTNARMTHYQSLL 582 Query: 1641 KDYDIT 1658 +T Sbjct: 583 LTERVT 588 >gb|AAC59310.1| (AF014792) pol polyprotein [walleye epidermal hyperplasia virus type 1] Length = 1200 Score = 95.2 bits (233), Expect = 4e-017 Identities = 85/340 (25%), Positives = 154/340 (45%), Gaps = 11/340 (3%) Frame = +3 Query: 552 SKGFTRPSASPWGSPVLFVKKKDGS-FRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGA 728 ++G S +P+ +KK +RM D + +N++ + + L Sbjct: 198 AQGVLTECHSSCNTPIFPIKKPGREEYRMIHDLRAINEIVAPLTAVVASPTTVLANLSPD 257 Query: 729 CT-FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILK 905 T F+ ID S+ + + I AF R Y + V+ G ++P F + L Sbjct: 258 MTCFTVIDLSNAFFSVPIHPDSQYLFAFTFEGRQYTWTVLPQGFIHSPTLFSQALFSSLS 317 Query: 906 PYLDLF---VILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFL 1076 D + +++DD+L+ SK + + +L L ++ K + V +L Sbjct: 318 KIKDSLTSEICIYMDDVLIASKDEETNYKDTATMLHHLADEGHKVSKKKLQLCKSEVVYL 377 Query: 1077 GHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTK 1256 G ++SK + P + + V + PT V VR+F+GLA Y R ++ +S + L L K Sbjct: 378 GQLISKAGRDILPERKKTVSQFAAPTTVRQVRAFLGLAGYCRHWIADYSENSKHLEELLK 437 Query: 1257 QSV--PSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK-- 1424 + V P + E +F++L + L +AP+L +P K+F +Y + A L +++ Sbjct: 438 KEVIEPFTLTGEQLRAFEQLKSTLLSAPVLAIPDYRKDFELYTSHTDHVAVAVLAQKQAG 497 Query: 1425 --NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH 1571 IA+ S +L E+ P A++ L Q +L G ++YT H Sbjct: 498 RTRPIAFLSAKLDAIEQGLPPCLRACASIHKNLTQADSFLLGRPVKIYTTH 548 Score = 44.9 bits (104), Expect = 0.053 Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 3/247 (1%) Frame = +2 Query: 2042 LQGLS-THPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPI 2218 + G+S TH G Y K+ ++ + I E +A C C K +++ P+ Sbjct: 831 IHGVSHTHKGGMMAY--FKKLWFHPLAAQAIDEVIAGCVVCLKHNPKYRKRKDKQGHRPL 888 Query: 2219 PKFKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVI 2398 P + + +DFV K K VIVD L+K +A + +++++ Sbjct: 889 PGRPFSHLQVDFVHMSDK---KPMYALVIVDVLSKWPEVFSCNKE-DATTVCDILMTDIL 944 Query: 2399 RLHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRA 2578 G+P I SD+ T FTS + L +G L HP + G ER + ++ + Sbjct: 945 PRWGLPDQIDSDQGTHFTSKITQQLANSIGVAWKLHCPGHPQSSGMVERLNRTIKTKIEK 1004 Query: 2579 CVVEF-AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRP-WGT 2752 W LP + + ++P+E + GR P++ V P W + Sbjct: 1005 VKTHLQIDAWHKALPYVLMELRAIPKKNY-LSPYEIVMGR----PMKLDTLSNVSPLWAS 1059 Query: 2753 DLLRESLDKV 2782 D L ++K+ Sbjct: 1060 DTLVTYMNKL 1069 >gb|AAF71150.1| (AF152540) pol protein integrase region [Abies alba] Length = 131 Score = 94.8 bits (232), Expect = 5e-017 Identities = 53/132 (40%), Positives = 76/132 (57%) Frame = +2 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 EK++MDF++G K+ GK I V+VDRLTK AHF + + A A ++ V +LH Sbjct: 1 EKVSMDFIIGLSKSEGK-SVIPVVVDRLTKYAHFCALSHPFQASTMATAFMEIVQKLHDN 59 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SDR FT FW L LGT++ + +H +DGQ++ + LE+ LR + Sbjct: 60 PKIIVSDRDPIFTRHFWTKLFSCLGTQLAHSSSYHSQSDGQTKIVNKCLEEYLRCFASDK 119 Query: 2594 AGHWDSFLPLAE 2629 HW +LPLAE Sbjct: 120 QTHWVKWLPLAE 131 >gb|AAD23707.1|AC006918_6 (AC006918) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 466 Score = 94.8 bits (232), Expect = 5e-017 Identities = 92/316 (29%), Positives = 153/316 (48%), Gaps = 20/316 (6%) Frame = +2 Query: 2090 LKQHFWWSRMKRDIVEFVAQCPNCQK---VKYEHQMPGGALQRMPIPKFKWEKIAMDFVV 2260 L+ FWW M +D EFV++C +CQ+ + ++MP + + I ++ +DF+ Sbjct: 122 LQAGFWWPTMFKDAQEFVSKCDSCQRKGNISRRNEMPQNPILEVDI----FDVWGIDFMG 177 Query: 2261 GFPKTIG-KYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDR 2437 FP + G KY I V+VD ++K I T +A+ KL+ + + GV +ISD Sbjct: 178 PFPSSYGNKY--ILVVVDYVSKWVEAI-ASPTNDAKVVLKLFKTIIFPRFGVSWVVISDG 234 Query: 2438 CTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFL 2617 F + ++ L ++ G + + T +HP T GQ E + + ++ +L V W + L Sbjct: 235 GKHFINKVFENLLKKHGVKHKVATPYHPQTSGQVEISNREIKTILEKTVGITRKDWSTKL 294 Query: 2618 PLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRP-WGTDLLR---------- 2764 A ++Y ++++ I PF L + C +E E + W LL Sbjct: 295 DDALWAYKTAFKTPIGTTPFNLLCVKSCHLHVE----LEYKAMWAVKLLNFDIKTAEEKR 350 Query: 2765 ----ESLDKVKC-IQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKR 2929 LD+++ E + R K + +K+ +F G+QVLL S +K Sbjct: 351 LIQLSELDEIRLEAYESSKIYKERTKLFHDKKIITKDFQVGDQVLLFNSRLKIF-----P 405 Query: 2930 GKLSPRYIGPFKVLKRVGEVAYELALPPGLSGVHPV 3037 GKL R+ GPF + + A LA G SGV V Sbjct: 406 GKLKSRWSGPFCITEVRPYGAVTLA---GKSGVFTV 438 >gb|AAD30054.1| (AF133052) pol polyprotein [walleye epidermal hyperplasia virus type 2] Length = 1246 Score = 94.8 bits (232), Expect = 5e-017 Identities = 89/340 (26%), Positives = 155/340 (45%), Gaps = 14/340 (4%) Frame = +3 Query: 552 SKGFTRPSASPWGSPVLFVKKKDGS-FRMCIDYKQLNKV----NVKNKYPLPHIDNLFDQ 716 ++G S +P+ ++K +RM D + +N++ P + NL Sbjct: 198 AQGVLAECHSSCNTPIFPIQKPGRQEYRMIHDLRAINEIVAPLTAVVASPTTVLANLSPD 257 Query: 717 LQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNG 896 ++ F+ ID S+ + + + AF R Y + V+ G ++P F + Sbjct: 258 MKW---FTVIDLSNAFFSVPVHPDSQYLFAFTFEGRQYTWTVLPQGFIHSPTLFSQALFS 314 Query: 897 ILKPYLDLF---VILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*V 1067 L D V +++DD+L+ S + + +L L ++ K + V Sbjct: 315 SLSKIKDSLTSEVCIYMDDVLIASTTKDINIKDTVTLLHHLADEGHKVSQKKLQLCKTEV 374 Query: 1068 SFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTN 1247 +LG ++S + P + E V + PT V VR+F+GLA Y R ++ +S + L Sbjct: 375 IYLGQLLSDRGREILPDRKETVSQFSSPTTVRQVRAFLGLAGYCRHWIPDYSEQSKYLEE 434 Query: 1248 LTKQSV--PSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE 1421 L K+ V P +++ E+FQKL L TAP+L +P K+F +Y + A L ++ Sbjct: 435 LLKKEVEEPFSLTEKQTEAFQKLKQSLITAPVLAIPDYKKDFELYTSHTEHVAIAVLSQK 494 Query: 1422 K----NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH 1571 + IAY S +L ER P A++ L Q +L G ++YT H Sbjct: 495 QGGRSRPIAYLSAKLDAIERGLPPCLRACASIHKNLTQADSFLLGRPVKIYTTH 548 Score = 50.8 bits (119), Expect = 0.001 Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 6/247 (2%) Frame = +2 Query: 2042 LQGLS-THPGATKMYRDLKQHFWWSRM-KRDIVEFVAQCPNCQK--VKYEHQMPGGALQR 2209 + G+S TH G Y + WW + + I E +A+C C K KY+ + G Sbjct: 877 IHGVSHTHKGGMLAYFE---KLWWHPLASKSIDEIMAKCAVCLKHNPKYKRRKGG----H 929 Query: 2210 MPIPKFKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYIS 2389 P+P + + +DFV K K VIVD +K A+ + + Sbjct: 930 RPLPNGPFSHLQIDFVHMSDK---KPMYALVIVDVFSKWPEVFSCN-NEEAKTVCNILMQ 985 Query: 2390 EVIRLHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDM 2569 ++I G+P I SD+ T FTS + L +G L HP + G ER + ++ Sbjct: 986 DIIPRWGLPEQIDSDQGTHFTSKITQELASSVGVSWKLHCPGHPQSSGMVERLNRTIKTK 1045 Query: 2570 LRACVVEF-AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRP- 2743 + W LP + ++P+E + GR P++ + P Sbjct: 1046 IEKAKTHLQLDKWYKVLPFVLMEL-RAIPKKNKLSPYEIVMGR----PMKLDTLSNMSPL 1100 Query: 2744 WGTDLLRESLDKV 2782 W +D L ++K+ Sbjct: 1101 WASDTLITYMNKL 1113 >gb|AAC59311.1| (AF014793) pol polyprotein [walleye epidermal hyperplasia virus type 2] Length = 1246 Score = 94.8 bits (232), Expect = 5e-017 Identities = 89/340 (26%), Positives = 155/340 (45%), Gaps = 14/340 (4%) Frame = +3 Query: 552 SKGFTRPSASPWGSPVLFVKKKDGS-FRMCIDYKQLNKV----NVKNKYPLPHIDNLFDQ 716 ++G S +P+ ++K +RM D + +N++ P + NL Sbjct: 198 AQGVLAECHSSCNTPIFPIQKPGRQEYRMIHDLRAINEIVAPLTAVVASPTTVLANLSPD 257 Query: 717 LQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNG 896 ++ F+ ID S+ + + + AF R Y + V+ G ++P F + Sbjct: 258 MKW---FTVIDLSNAFFSVPVHPDSQYLFAFTFEGRQYTWTVLPQGFIHSPTLFSQALFS 314 Query: 897 ILKPYLDLF---VILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*V 1067 L D V +++DD+L+ S + + +L L ++ K + V Sbjct: 315 SLSKIKDSLTSEVCIYMDDVLIASTTKDINIKDTVTLLHHLADEGHKVSQKKLQLCKTEV 374 Query: 1068 SFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTN 1247 +LG ++S + P + E V + PT V VR+F+GLA Y R ++ +S + L Sbjct: 375 IYLGQLLSDRGREILPDRKETVSQFSSPTTVRQVRAFLGLAGYCRHWIPDYSEQSKYLEE 434 Query: 1248 LTKQSV--PSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE 1421 L K+ V P +++ E+FQKL L TAP+L +P K+F +Y + A L ++ Sbjct: 435 LLKKEVEEPFSLTEKQTEAFQKLKQSLITAPVLAIPDYKKDFELYTSHTEHVAIAVLSQK 494 Query: 1422 K----NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH 1571 + IAY S +L ER P A++ L Q +L G ++YT H Sbjct: 495 QGGRSRPIAYLSAKLDAIERGLPPCLRACASIHKNLTQADSFLLGRPVKIYTTH 548 Score = 50.8 bits (119), Expect = 0.001 Identities = 61/247 (24%), Positives = 101/247 (40%), Gaps = 6/247 (2%) Frame = +2 Query: 2042 LQGLS-THPGATKMYRDLKQHFWWSRM-KRDIVEFVAQCPNCQK--VKYEHQMPGGALQR 2209 + G+S TH G Y + WW + + I E +A+C C K KY+ + G Sbjct: 877 IHGVSHTHKGGMLAYFE---KLWWHPLASKSIDEIMAKCAVCLKHNPKYKRRKGG----H 929 Query: 2210 MPIPKFKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYIS 2389 P+P + + +DFV K K VIVD +K A+ + + Sbjct: 930 RPLPNGPFSHLQIDFVHMSDK---KPMYALVIVDVFSKWPEVFSCN-NEEAKTVCNILMQ 985 Query: 2390 EVIRLHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDM 2569 ++I G+P I SD+ T FTS + L +G L HP + G ER + ++ Sbjct: 986 DIIPRWGLPEQIDSDQGTHFTSKITQELASSVGVSWKLHCPGHPQSSGMVERLNRTIKTK 1045 Query: 2570 LRACVVEF-AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRP- 2743 + W LP + ++P+E + GR P++ + P Sbjct: 1046 IEKAKTHLQLDKWYKVLPFVLMEL-RAIPKKNKLSPYEIVMGR----PMKLDTLSNMSPL 1100 Query: 2744 WGTDLLRESLDKV 2782 W +D L ++K+ Sbjct: 1101 WASDTLITYMNKL 1113 >gb|AAD30048.1|AF133051_3 (AF133051) pol polyprotein [walleye epidermal hyperplasia virus type 1] Length = 1200 Score = 94.0 bits (230), Expect = 9e-017 Identities = 84/340 (24%), Positives = 154/340 (44%), Gaps = 11/340 (3%) Frame = +3 Query: 552 SKGFTRPSASPWGSPVLFVKKKDGS-FRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGA 728 ++G S +P+ +KK +RM D + +N++ + + L Sbjct: 198 AQGVLTECHSSCNTPIFPIKKPGREEYRMIHDLRAINEIVAPLTAVVASPTTVLANLSPD 257 Query: 729 CT-FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILK 905 T F+ ID S+ + + I AF R Y + V+ G ++P F + L Sbjct: 258 MTCFTVIDLSNAFFSVPIHPDSQYLFAFTFEGRQYTWTVLPQGFIHSPTLFSQALFSSLS 317 Query: 906 PYLDLF---VILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFL 1076 D + +++DD+L+ S+ + + +L L ++ K + V +L Sbjct: 318 KIKDSLTSEICIYMDDVLIASRDEETNYKDTATMLHHLADEGHKVSKKKLQLCKSEVVYL 377 Query: 1077 GHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTK 1256 G ++SK + P + + V + PT V VR+F+GLA Y R ++ +S + L L K Sbjct: 378 GQLISKAGRDILPERKKTVSQFAAPTTVRQVRAFLGLAGYCRHWIADYSENSKHLEELLK 437 Query: 1257 QSV--PSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKEK-- 1424 + V P + E +F++L + L +AP+L +P K+F +Y + A L +++ Sbjct: 438 KEVIEPFTLTGEQLRAFEQLKSTLLSAPVLAIPDYRKDFELYTSHTDHVAVAVLAQKQAG 497 Query: 1425 --NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH 1571 IA+ S +L E+ P A++ L Q +L G ++YT H Sbjct: 498 RTRPIAFLSAKLDAIEQGLPPCLRACASIHKNLTQADSFLLGRPVKIYTTH 548 Score = 44.9 bits (104), Expect = 0.053 Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 3/247 (1%) Frame = +2 Query: 2042 LQGLS-THPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPI 2218 + G+S TH G Y K+ ++ + I E +A C C K +++ P+ Sbjct: 831 IHGVSHTHKGGMMAY--FKKLWFHPLAAQAIDEVIAGCVVCLKHNPKYRKRKDKQGHRPL 888 Query: 2219 PKFKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVI 2398 P + + +DFV K K VIVD L+K +A + +++++ Sbjct: 889 PGRPFSHLQVDFVHMSDK---KPMYALVIVDVLSKWPEVFSCNKE-DATTVCDILMTDIL 944 Query: 2399 RLHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRA 2578 G+P I SD+ T FTS + L +G L HP + G ER + ++ + Sbjct: 945 PRWGLPDQIDSDQGTHFTSKITQQLANSIGVAWKLHCPGHPQSSGMVERLNRTIKTKIEK 1004 Query: 2579 CVVEF-AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRP-WGT 2752 W LP + + ++P+E + GR P++ V P W + Sbjct: 1005 VKTHLQIDAWHKALPYVLMELRAIPKKNY-LSPYEIVMGR----PMKLDTLSNVSPLWAS 1059 Query: 2753 DLLRESLDKV 2782 D L ++K+ Sbjct: 1060 DTLVTYMNKL 1069 >emb|CAA11581.1| (AJ223851) pol gene [Feline foamy virus] Length = 1156 Score = 94.0 bits (230), Expect = 9e-017 Identities = 101/366 (27%), Positives = 160/366 (43%), Gaps = 16/366 (4%) Frame = +3 Query: 579 SPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSS 758 S +PV V K +G +RM +DY+ +NKV H + L + ID S+ Sbjct: 193 STMNTPVYPVPKPNGRWRMVLDYRAVNKVTPLIAVQNQHSYGILGSLFKGRYKTTIDLSN 252 Query: 759 GYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAF----MSLMNGILKPYLDLFV 926 G+ I D TAF + + Y + V+ G N+P F + L+ GI V Sbjct: 253 GFWAHPIVPEDYWITAFTWQGKQYCWTVLPQGFLNSPGLFTGDVVDLLQGIPN------V 306 Query: 927 ILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG-HVVSKD*V 1103 +++DD+ + S KEH +L I+ L+E K V FLG + ++ Sbjct: 307 EVYVDDVYISHDSEKEHLEYLDILFNRLKEAGYIISLKKSNIANSIVDFLGFQITNEGRG 366 Query: 1104 MVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNL----TKQSVPS 1271 + D +K E +++ PT + ++S +GL ++ R F+ F+ + + L L TK VP Sbjct: 367 LTDTFK-EKLENITAPTTLKQLQSILGLLNFARNFIPDFTELIAPLYALIPKSTKNYVP- 424 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWG--LGAALMKEKNVIAYAS 1445 W E + + L T L A L K I+ +ASY + EK I+Y S Sbjct: 425 -WQIEHSTTLETLITKLNGAEYLQGRKGDKTLIMKVNASYTTGYIRYYNEGEKKPISYVS 483 Query: 1446 RQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYV-----FTQKYLN 1610 E + + L V L + G VY+ S+Q + +K L Sbjct: 484 IVFSKTELKFTELEKLLTTVHKGLLKALDLSMGQNIHVYSPIVSMQNIQKTPQTAKKALA 543 Query: 1611 LRQRRWMELLKDYDITILYHPE 1676 R W+ L+D I Y P+ Sbjct: 544 SRWLSWLSYLEDPRIRFFYDPQ 565 Score = 82.3 bits (200), Expect = 3e-013 Identities = 54/218 (24%), Positives = 103/218 (46%), Gaps = 2/218 (0%) Frame = +2 Query: 2057 THPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWE 2236 +H G + +++++WW +MK+DI F++ C C+ V + P Q + P ++ Sbjct: 817 SHAGREAVLLKIQENYWWPKMKKDISSFLSTCNVCKMVNPLNLKPISP-QAIVHPTKPFD 875 Query: 2237 KIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVP 2416 K MD++ P + G Y + V+VD T P K + K I + L G+ Sbjct: 876 KFYMDYIGPLPPSEG-YVHVLVVVDAATGFTWLYPTKAQTS-----KATIKVLNHLTGLA 929 Query: 2417 LPII--SDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 +P + SD+ + FTS + +E +++ T +HP + G+ ER ++ +L +V Sbjct: 930 IPKVLHSDQGSAFTSEEFAQWAKERNIQLEFSTPYHPQSSGKVERKNSEIKKLLTKLLVG 989 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSP 2710 W + + + + NN++ S P + ++G C P Sbjct: 990 RPLKWYNLISSVQLALNNTHVVSTKYTPHQLMFGIDCNLP 1029 >emb|CAA70075.1| (Y08851) pol [Feline foamy virus] Length = 1156 Score = 94.0 bits (230), Expect = 9e-017 Identities = 101/366 (27%), Positives = 160/366 (43%), Gaps = 16/366 (4%) Frame = +3 Query: 579 SPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSS 758 S +PV V K +G +RM +DY+ +NKV H + L + ID S+ Sbjct: 193 STMNTPVYPVPKPNGRWRMVLDYRAVNKVTPLIAVQNQHSYGILGSLFKGRYKTTIDLSN 252 Query: 759 GYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAF----MSLMNGILKPYLDLFV 926 G+ I D TAF + + Y + V+ G N+P F + L+ GI V Sbjct: 253 GFWAHPIVPEDYWITAFTWQGKQYCWTVLPQGFLNSPGLFTGDVVDLLQGIPN------V 306 Query: 927 ILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG-HVVSKD*V 1103 +++DD+ + S KEH +L I+ L+E K V FLG + ++ Sbjct: 307 EVYVDDVYISHDSEKEHLEYLDILFNRLKEAGYIISLKKSNIANSIVDFLGFQITNEGRG 366 Query: 1104 MVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNL----TKQSVPS 1271 + D +K E +++ PT + ++S +GL ++ R F+ F+ + + L L TK VP Sbjct: 367 LTDTFK-EKLENITAPTTLKQLQSILGLLNFARNFIPDFTELIAPLYALIPKSTKNYVP- 424 Query: 1272 VWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWG--LGAALMKEKNVIAYAS 1445 W E + + L T L A L K I+ +ASY + EK I+Y S Sbjct: 425 -WQIEHSTTLETLITKLNGAEYLQGRKGDKTLIMKVNASYTTGYIRYYNEGEKKPISYVS 483 Query: 1446 RQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYV-----FTQKYLN 1610 E + + L V L + G VY+ S+Q + +K L Sbjct: 484 IVFSKTELKFTELEKLLTTVHKGLLKALDLSMGQNIHVYSPIVSMQNIQKTPQTAKKALA 543 Query: 1611 LRQRRWMELLKDYDITILYHPE 1676 R W+ L+D I Y P+ Sbjct: 544 SRWLSWLSYLEDPRIRFFYDPQ 565 Score = 82.3 bits (200), Expect = 3e-013 Identities = 54/218 (24%), Positives = 103/218 (46%), Gaps = 2/218 (0%) Frame = +2 Query: 2057 THPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWE 2236 +H G + +++++WW +MK+DI F++ C C+ V + P Q + P ++ Sbjct: 817 SHAGREAVLLKIQENYWWPKMKKDISSFLSTCNVCKMVNPLNLKPISP-QAIVHPTKPFD 875 Query: 2237 KIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVP 2416 K MD++ P + G Y + V+VD T P K + K I + L G+ Sbjct: 876 KFYMDYIGPLPPSEG-YVHVLVVVDAATGFTWLYPTKAQTS-----KATIKVLNHLTGLA 929 Query: 2417 LPII--SDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 +P + SD+ + FTS + +E +++ T +HP + G+ ER ++ +L +V Sbjct: 930 IPKVLHSDQGSAFTSEEFAQWAKERNIQLEFSTPYHPQSSGKVERKNSEIKKLLTKLLVG 989 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSP 2710 W + + + + NN++ S P + ++G C P Sbjct: 990 RPLKWYNLISSVQLALNNTHVVSTKYTPHQLMFGIDCNLP 1029 >gb|AAF71153.1| (AF152543) pol protein integrase region [Picea abies] Length = 131 Score = 94.0 bits (230), Expect = 9e-017 Identities = 53/132 (40%), Positives = 74/132 (55%) Frame = +2 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 EK++MDF+ PK+ GK I VIVDRLTK HF + + A K + ++ V +LHG Sbjct: 1 EKVSMDFITRLPKSEGK-SVIMVIVDRLTKYTHFCALSHPFKASKVSTAFMETVQKLHGS 59 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 I+SDR FT FW L LGT++ + +HP ++GQ+E + LE L V + Sbjct: 60 SKIIVSDRDPIFTGHFWTKLFSCLGTQLAHSSSYHPQSNGQTEIVNKCLEGYLHCFVSDK 119 Query: 2594 AGHWDSFLPLAE 2629 W +LPLAE Sbjct: 120 QTQWFKWLPLAE 131 >gb|AAC58531.1| (U85043) reverse transcriptase [feline syncytial virus] Length = 1156 Score = 92.8 bits (227), Expect = 2e-016 Identities = 104/366 (28%), Positives = 167/366 (45%), Gaps = 23/366 (6%) Frame = +3 Query: 579 SPWGSPVLFVKKKDGSFRMCIDYKQLNKVN----VKNKYPLPHIDNLFDQLQGACTFSKI 746 S +PV V K +G +RM +DY+ +NKV V+N++ I +LF + I Sbjct: 193 STMNTPVYPVPKPNGRWRMVLDYRAVNKVTPLIAVQNQHSYGIIGSLFKGKYK----TTI 248 Query: 747 DFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAF----MSLMNGILKPYL 914 D S+G+ I D TAF + + Y + V+ G N+P F + L+ GI Sbjct: 249 DLSNGFWAHPIVPEDYWITAFTWQGKQYCWTVLPQGFLNSPGLFTGDVVDLLQGIPN--- 305 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG-HVVS 1091 V +++DD+ + S KEH +L I+ L+E K V FLG + + Sbjct: 306 ---VEVYVDDVYISHDSEKEHLEYLDILFNRLKEAGYIVSLKKSNIANSIVDFLGFQITN 362 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNL----TKQ 1259 + + D +K E +++ PT + ++S +GL ++ R F+ F+ + + L L TK Sbjct: 363 EGRGLTDTFK-EKLENITAPTTLKQLQSILGLLNFARNFIPDFTELIAPLYALIPKSTKN 421 Query: 1260 SVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK-----EK 1424 VP W E + + L T L A L K I+ +ASY +K EK Sbjct: 422 YVP--WQAEHSTTLETLITKLNGAEYLQGRRGDKALIMKVNASY---TTGYIKYYNEGEK 476 Query: 1425 NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYV----- 1589 I+Y S E + + L + L + G VY+ S+Q + Sbjct: 477 KPISYVSIVFSKTELKFTELEKLLTTMHKGLLKALDLSMGQNIYVYSPIVSMQNIQKTPQ 536 Query: 1590 FTQKYLNLRQRRWMELLKDYDITILYHPE 1676 +K L R W+ L+D I Y P+ Sbjct: 537 TAKKALASRWLSWLSYLEDPRIRFFYDPQ 565 Score = 79.2 bits (192), Expect = 3e-012 Identities = 52/218 (23%), Positives = 102/218 (45%), Gaps = 2/218 (0%) Frame = +2 Query: 2057 THPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWE 2236 +H G + +++++WW +MK+D+ F++ C C+ V + P Q + P ++ Sbjct: 817 SHAGREAVLLKIQENYWWPKMKKDVSSFLSTCNVCKMVNPLNLKPISP-QTIVHPTKPFD 875 Query: 2237 KIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVP 2416 K MD++ P + G Y I V+VD T P + + K I + L G+ Sbjct: 876 KFYMDYIGPLPPSEG-YIHILVVVDAATGFTWLYPTRAQTS-----KATIKVLNHLTGLA 929 Query: 2417 LPII--SDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 +P + SD+ + FTS + +E +++ +HP + G+ ER ++ +L +V Sbjct: 930 IPKVLHSDQGSAFTSEEFAQWAKEKNIQLEFSAPYHPQSSGKVERKNSEIKKLLTKLLVG 989 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSP 2710 W + + + + NN++ S P + ++G C P Sbjct: 990 RPLKWYNLISSVQLALNNTHVVSTKYTPHQLMFGIDCNLP 1029 >gb|AAB38321.1| (U78765) FeSFV polymerase [feline syncytial virus] Length = 1156 Score = 92.8 bits (227), Expect = 2e-016 Identities = 104/366 (28%), Positives = 167/366 (45%), Gaps = 23/366 (6%) Frame = +3 Query: 579 SPWGSPVLFVKKKDGSFRMCIDYKQLNKVN----VKNKYPLPHIDNLFDQLQGACTFSKI 746 S +PV V K +G +RM +DY+ +NKV V+N++ I +LF + I Sbjct: 193 STMNTPVYPVPKPNGRWRMVLDYRAVNKVTPLIAVQNQHSYGIIGSLFKGKYK----TTI 248 Query: 747 DFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAF----MSLMNGILKPYL 914 D S+G+ I D TAF + + Y + V+ G N+P F + L+ GI Sbjct: 249 DLSNGFWAHPIVPEDYWITAFTWQGKQYCWTVLPQGFLNSPGLFTGDVVDLLQGIPN--- 305 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG-HVVS 1091 V +++DD+ + S KEH +L I+ L+E K V FLG + + Sbjct: 306 ---VEVYVDDVYISHDSEKEHLEYLDILFNRLKEAGYIVSLKKSNIANSIVDFLGFQITN 362 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNL----TKQ 1259 + + D +K E +++ PT + ++S +GL ++ R F+ F+ + + L L TK Sbjct: 363 EGRGLTDTFK-EKLENITAPTTLKQLQSILGLLNFARNFIPDFTELIAPLYALIPKSTKN 421 Query: 1260 SVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMK-----EK 1424 VP W E + + L T L A L K I+ +ASY +K EK Sbjct: 422 YVP--WQAEHSTTLETLITKLNGAEYLQGRRGDKALIMKVNASY---TTGYIKYYNEGEK 476 Query: 1425 NVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYV----- 1589 I+Y S E + + L + L + G VY+ S+Q + Sbjct: 477 KPISYVSIVFSKTELKFTELEKLLTTMHKGLLKALDLSMGQNIYVYSPIVSMQNIQKTPQ 536 Query: 1590 FTQKYLNLRQRRWMELLKDYDITILYHPE 1676 +K L R W+ L+D I Y P+ Sbjct: 537 TAKKALASRWLSWLSYLEDPRIRFFYDPQ 565 Score = 79.2 bits (192), Expect = 3e-012 Identities = 52/218 (23%), Positives = 102/218 (45%), Gaps = 2/218 (0%) Frame = +2 Query: 2057 THPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWE 2236 +H G + +++++WW +MK+D+ F++ C C+ V + P Q + P ++ Sbjct: 817 SHAGREAVLLKIQENYWWPKMKKDVSSFLSTCNVCKMVNPLNLKPISP-QTIVHPTKPFD 875 Query: 2237 KIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVP 2416 K MD++ P + G Y I V+VD T P + + K I + L G+ Sbjct: 876 KFYMDYIGPLPPSEG-YIHILVVVDAATGFTWLYPTRAQTS-----KATIKVLNHLTGLA 929 Query: 2417 LPII--SDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 +P + SD+ + FTS + +E +++ +HP + G+ ER ++ +L +V Sbjct: 930 IPKVLHSDQGSAFTSEEFAQWAKEKNIQLEFSAPYHPQSSGKVERKNSEIKKLLTKLLVG 989 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSP 2710 W + + + + NN++ S P + ++G C P Sbjct: 990 RPLKWYNLISSVQLALNNTHVVSTKYTPHQLMFGIDCNLP 1029 >gb|AAF71152.1| (AF152542) pol protein integrase region [Picea abies] Length = 131 Score = 92.1 bits (225), Expect = 3e-016 Identities = 54/132 (40%), Positives = 73/132 (54%) Frame = +2 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGV 2413 EK++MDF+ PK+ K I VIVDRLTK AHF + + A A ++ V +LHG Sbjct: 1 EKVSMDFITRLPKSERK-SVIMVIVDRLTKYAHFCALSHPFKASTVATAFMKTVQKLHGG 59 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I+SDR F FW L LGT++ + HP +DG++E + LE LR V + Sbjct: 60 PKIIVSDRDPIFIGHFWTELFSCLGTQLAHSSSCHPQSDGKTEIVNKCLEGYLRCFVSDK 119 Query: 2594 AGHWDSFLPLAE 2629 W +LPLAE Sbjct: 120 QTQWFKWLPLAE 131 >gb|AAC82611.1| (AF033822) Pr gag-pro-pol [Walleye dermal sarcoma virus] Length = 1751 Score = 90.9 bits (222), Expect = 8e-016 Identities = 93/389 (23%), Positives = 163/389 (40%), Gaps = 16/389 (4%) Frame = +3 Query: 405 PTDLPGM--PPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSA 578 PTD+ M PP I ++ SI Y + ++G Sbjct: 747 PTDIGRMLVPP-----ITIKIKDNASLPSIRQYPLPKDKTEGLRPLISSLENQGILIKCH 801 Query: 579 SPWGSPVLFVKKKD-GSFRMCIDYKQLNKV----NVKNKYPLPHIDNLFDQLQGACTFSK 743 SP +P+ +KK +RM D + +N + P + NL L F+ Sbjct: 802 SPCNTPIFPIKKAGRDEYRMIHDLRAINNIVAPLTAVVASPTTVLSNLAPSLHW---FTV 858 Query: 744 IDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGIL---KPYL 914 ID S+ + + I AF Y + V+ G ++P F + L K + Sbjct: 859 IDLSNAFFSVPIHKDSQYLFAFTFEGHQYTWTVLPQGFIHSPTLFSQALYQSLHKIKFKI 918 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 + +++DD+L+ SK + ++L+ L + K + V +LG +++ Sbjct: 919 SSEICIYMDDVLIASKDRDTNLKDTAVMLQHLASEGHKVSKKKLQLCQQEVVYLGQLLTP 978 Query: 1095 D*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSV--P 1268 + + P + V +++PT + +R+F+GL Y R ++ FS + L K+ P Sbjct: 979 EGRKILPDRKVTVSQFQQPTTIRQIRAFLGLVGYCRHWIPEFSIHSKFLEKQLKKDTAEP 1038 Query: 1269 SVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE----KNVIA 1436 D+ E+F KL +TTAP+L +P K F +Y S A L ++ IA Sbjct: 1039 FQLDDQQVEAFNKLKHAITTAPVLVVPDPAKPFQLYTSHSEHASIAVLTQKHAGRTRPIA 1098 Query: 1437 YASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDH 1571 + S + E P A++ +L Q ++ G +YT H Sbjct: 1099 FLSSKFDAIESGLPPCLKACASIHRSLTQADSFILGAPLIIYTTH 1143 Score = 51.2 bits (120), Expect = 7e-004 Identities = 74/310 (23%), Positives = 125/310 (39%), Gaps = 6/310 (1%) Frame = +2 Query: 2042 LQGLS-THPGATKMYRDLKQHFWWSRMKRDIVEFV-AQCPNCQK--VKYEHQMPGGALQR 2209 + G+S TH G Y FW ++ + C C K KY+ ++ G Sbjct: 1426 IHGVSHTHKGGIMSYFS---KFWTHPKASQTIDLILGHCQICLKHNPKYKSRLQG----H 1478 Query: 2210 MPIPKFKWEKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYIS 2389 P+P + + +DFV + K VI+D +K IP +A+ + + Sbjct: 1479 RPLPSRPFAHLQIDFV---QMCVKKPMYALVIIDVFSKWPEIIPCNKE-DAKTVCDILMK 1534 Query: 2390 EVIRLHGVPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLED- 2566 ++I G+P I SD+ T FT+ + L +G L HP + G ERT + L+ Sbjct: 1535 DIIPRWGLPDQIDSDQGTHFTAKISQELTHSIGVAWKLHCPGHPRSSGIVERTNRTLKSK 1594 Query: 2567 MLRACVVEFAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRP- 2743 +++A W LP + + ++P E + GR P++ ++ P Sbjct: 1595 IIKAQEQLQLSKWTEVLPYVLLEMRATPKKH-GLSPHEIVMGR----PMKTTYLSDMSPL 1649 Query: 2744 WGTDLLRESLDKVKCIQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFG 2923 W TD L ++K+ +R+ Q+V D + L P G Sbjct: 1650 WATDTLVTYMNKL-----------TRQLSAYHQQVVD----QWPSTSLPPGPEPGSWCML 1694 Query: 2924 KRGKLSPRYIGPFKVL 2971 + K S + GPF +L Sbjct: 1695 RNPKKSSNWEGPFLIL 1710 >emb|CAB53450.1| (AJ243731) polymerase polyprotein [Crocodylus niloticus] Length = 173 Score = 89.7 bits (219), Expect = 2e-015 Identities = 47/129 (36%), Positives = 68/129 (52%) Frame = +3 Query: 423 MPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVL 602 +PP R D IDL P S Y ++ +G R S SP SP+ Sbjct: 44 LPPHRLYDCRIDLIPNATIPSCRVYALSEKETKHLKTYIDTNLERGLIRQSRSPAASPLF 103 Query: 603 FVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIR 782 FV K +G R CIDY+ LN+ V+N+YPLP I L ++++GA ++++D YH +++R Sbjct: 104 FVPKANGELRPCIDYRVLNRNTVRNRYPLPLISVLLERVKGAQWYTRLDLRGAYHLVRMR 163 Query: 783 ATDVPKTAF 809 D KTAF Sbjct: 164 QGDEWKTAF 172 >gb|AAD25683.2|AC006194_1 (AC006194) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 930 Score = 89.3 bits (218), Expect = 2e-015 Identities = 73/265 (27%), Positives = 129/265 (48%), Gaps = 9/265 (3%) Frame = +2 Query: 2090 LKQHFWWSRMKRDIVEFVAQCPNCQ---KVKYEHQMPGGALQRMPIPKFKWEKIAMDFVV 2260 L+ FWW M RD +F++QC CQ K+ ++MP R+ + F ++ +DF+ Sbjct: 221 LQADFWWPTMFRDTQKFISQCDPCQRRGKISKRNEMPPNF--RLEVEVF--DRWGIDFMG 276 Query: 2261 GFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPLPIISDRC 2440 FP + K I V VD ++K I + ++ KL+ S + GVP +ISD Sbjct: 277 PFPPS-NKNLYILVDVDYVSKWVEAI-ASLKNDSAVVMKLFKSIIFPRFGVPRIVISDGD 334 Query: 2441 TKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFLP 2620 F + + L + G + + T +HP T GQ E + + ++++L V + W L Sbjct: 335 KHFINKILEKLLLQYGVQHRVATPYHPQTSGQVEVSNRQIKEILEKTVGKAKKEWSYKLY 394 Query: 2621 LAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFD--AFEVRPWGTDLL---RESLDKVK 2785 A ++Y ++++ + PF LYG+ C P+E A+ V+ D+ LD+++ Sbjct: 395 DALWAYKTAFKTPLGTTPFHLLYGKACHLPVELEHKAAWAVKMMNFDIKSAGESELDEIR 454 Query: 2786 C-IQEKHLAAQSRKKKYVVQKVRDFEFMEGEQVL 2884 + + R K Y +K+ F +Q+L Sbjct: 455 IHAYDNSKLYKERTKAYHDKKILTRTFEPNDQIL 488 >gb|AAC47272.1| (U09586) integrase [Tribolium castaneum] Length = 470 Score = 89.3 bits (218), Expect = 2e-015 Identities = 86/336 (25%), Positives = 150/336 (44%), Gaps = 5/336 (1%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H GATK+Y +K+ ++W M R I + + C CQK K ++ G L + + + Sbjct: 142 HFGATKVYNSMKREYYWPNMYRTIKKRLRSCDLCQKTKSSNRPHQGPLTPI-LYDHIGDL 200 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 + +DF P ++V++D +K P++ K A + E + P Sbjct: 201 VCVDFYGPLPTGRLGASYVFVVIDVFSKFLKLYPLRKA--TAKIAAKRLIEDFSGYIKPK 258 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 ++SD T+F S W+ + L + HP ++ SER ++ L + RA E Sbjct: 259 CVLSDHGTQFISNTWQNSLRAADIQPTLSSIRHPESN-PSERVMRELGRIFRAYCRENHA 317 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDA--FEVRPWGTDLLRESL 2773 W + L E N S +P+E LYGR +P++ + VRP L RE + Sbjct: 318 SWVNHLSNIEDCLNYVPHISTGFSPYEILYGRTPPNPLDAVTSGLLPVRP---PLTREEI 374 Query: 2774 DKVKCIQEKH---LAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSP 2944 + KH L +++K + V ++ D+ ++ KV+ F K P Sbjct: 375 HEKARENLKHHANLRQKNQKGEVTVLEIEDWVLLKN-----KVTSDTRTHQF---AKFMP 426 Query: 2945 RYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYH 3067 Y GP+K++ + Y++A P + + V+ ++ LK YH Sbjct: 427 LYSGPYKIIAKPHPNTYQIA-DPVTNEIKGVYNMTNLKFYH 466 >dbj|BAB08227.1| (AB011483) MADS-box protein-like [Arabidopsis thaliana] Length = 299 Score = 87.0 bits (212), Expect = 1e-014 Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 1/122 (0%) Frame = +2 Query: 8150 GHKGIVIARIQSSRN*QVTVSKRLIGLFKKVSCLCTLCGAYVAVVIFSSSNKIYSREHPS 8329 G + I + ++++ N QVT SKR GLFKK S LCTLCGA VA+V+FS K++S HP+ Sbjct: 7 GRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPN 66 Query: 8330 AEFIVDKFLGENHHLDFDGPNPSVL-AHQNVNVDEINN*LNMLKNSLEQQKKHSKSLQGI 8506 + ++D+F+ N N + +N V ++NN L + + LE +KK L+ I Sbjct: 67 VDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDELKKI 126 Query: 8507 RKE 8515 R++ Sbjct: 127 REK 129 Score = 39.9 bits (91), Expect(2) = 0.008 Identities = 17/32 (53%), Positives = 22/32 (68%) Frame = +2 Query: 15506 KRQVEICTLCGTYVAVVIF*SRHKVHSCGHPS 15601 K+ E+CTLCG VA+V+F KV S GHP+ Sbjct: 35 KKASELCTLCGAEVAIVVFSPGRKVFSFGHPN 66 Score = 37.5 bits (85), Expect = 9.0 Identities = 20/45 (44%), Positives = 27/45 (59%) Frame = +1 Query: 15421 GTKRILITRIRNSKN*QVTFSKQLIGLFKKASRDMHFMWYLCCCC 15555 G ++I + +++N N QVTFSK+ GLFKKAS LC C Sbjct: 7 GRQKIEMVKMKNESNLQVTFSKRRSGLFKKASE-------LCTLC 44 Score = 27.0 bits (58), Expect(2) = 0.008 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +3 Query: 15642 QNFNVDEINN*LNMVENSLERQKKTWKISPRIKERT 15749 +N V ++NN L V + LE +KK + +I+E+T Sbjct: 95 RNSIVQDLNNHLTQVLSQLETEKKKYDELKKIREKT 130 >gb|AAA47796.1| (M74895) pol polyprotein [Simian foamy virus type 3] Length = 1157 Score = 86.6 bits (211), Expect = 2e-014 Identities = 54/226 (23%), Positives = 99/226 (42%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G + + +WW +++D+V+ + QC C V + + R P ++K Sbjct: 830 HTGRDSTFLKVSSKYWWPNLRKDVVKVIRQCKQCL-VTNAATLAAPPILRPERPVKPFDK 888 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 +D++ P + G Y + V+VD +T P K + A + ++ VP Sbjct: 889 FFIDYIGPLPPSNG-YLHVLVVVDSMTGFVWLYPTKAPSTS---ATVKALNMLTSIAVPK 944 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I SD+ FTS + + G +++ T +HP + G+ ER ++ +L +V Sbjct: 945 VIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPA 1004 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEV 2737 W LP+ + + NNSY S P + L+G +P D ++ Sbjct: 1005 KWYDLLPVVQLALNNSYSPSSKYTPHQLLFGIDSNTPFANSDTLDL 1050 Score = 72.2 bits (174), Expect = 3e-010 Identities = 63/279 (22%), Positives = 115/279 (40%), Gaps = 2/279 (0%) Frame = +3 Query: 495 YTMAPTXXXXXXXXXXXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVK 674 Y + P +G S +PV V K DG +RM +DY+++NK Sbjct: 182 YPINPKAKASIQTVINDLLKQGVLIQQNSIMNTPVYPVPKPDGKWRMVLDYREVNKTIPL 241 Query: 675 NKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFG 854 H + + + +D S+G+ I TAF + Y + + G Sbjct: 242 IAAQNQHSAGILSSIFRGKYKTTLDLSNGFWAHSITPESYWLTAFTWLGQQYCWTRLPQG 301 Query: 855 LTNAPAAFMSLMNGILKPYLDLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAK 1034 N+PA F + + +LK + V +++DDI + +EH L V +L Sbjct: 302 FLNSPALFTADVVDLLKEVPN--VQVYVDDIYISHDDPREHLEQLEKVFSLLLNAGYVVS 359 Query: 1035 FSKCEFWLD*VSFLGHVVSKD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVK 1214 K E V FLG ++K+ + + + + P ++ ++S +GL ++ R F+ Sbjct: 360 LKKSEIAQHEVEFLGFNITKEGRGLTETFKQKLLNITPPRDLKQLQSILGLLNFARNFIP 419 Query: 1215 GFSSVASQLTNL--TKQSVPSVWSDECEESFQKLNTLLTTA 1331 FS + L N+ T W+ + + Q + ++L +A Sbjct: 420 NFSELVKPLYNIIATANGKYITWTTDNSQQLQNIISMLNSA 460 >gb|AAA19978.1| (U04327) N-terminus uncertain [Simian foamy virus] Length = 1146 Score = 84.7 bits (206), Expect = 6e-014 Identities = 55/226 (24%), Positives = 100/226 (43%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G + +WW M++D+V+ + +C C ++ G L R P+ ++K Sbjct: 817 HTGREATLLKIANLYWWPNMRKDVVKQLGRCKQCLITNASNKTSGPIL-RPDRPQKPFDK 875 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 +D++ P + G Y + VIVD +T P K + A + V+ +P Sbjct: 876 FFIDYIGPLPPSQG-YLYVLVIVDGMTGFTWLYPTKAPSTS---ATVKSLNVLTSIAIPK 931 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I SD+ FTS + +E G ++ T +HP + G+ ER ++ +L +V Sbjct: 932 VIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPT 991 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEV 2737 W LP+ + + NN+Y + P + L+G +P D ++ Sbjct: 992 KWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTPFANQDTLDL 1037 Score = 78.0 bits (189), Expect = 6e-012 Identities = 87/371 (23%), Positives = 158/371 (42%), Gaps = 10/371 (2%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +G P S +PV V K DG +RM +DY+++NK H + + Sbjct: 188 QGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKY 247 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 + +D ++G+ I TAF + + Y + + G N+PA F + +LK Sbjct: 248 KTTLDLANGFWAHPITPDSYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADAVDLLKEVP 307 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 + V +++DDI + + EH L V ++L + K E V FLG ++K Sbjct: 308 N--VQVYVDDIYLSHDNPHEHIQQLEKVFQILLQAGYVVSLKKSEIGQRTVEFLGFNITK 365 Query: 1095 D-*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + D +K +++ + P ++ ++S +GL ++ R F+ F+ + L NL S Sbjct: 366 EGRGLTDTFKTKLL-NVTPPKDLKQLQSILGLLNFARNFIPNFAELVQTLYNLIASSKGK 424 Query: 1272 V--WSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE--KNVIAY 1439 W+++ + K+ L TA L + + ++ + S E K I Y Sbjct: 425 YIEWTEDNTKQLNKVIEALNTASNLEERLPDQRLVIKVNTSPSAGYVRYYNESGKKPIMY 484 Query: 1440 ASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVF-----TQKY 1604 + E + + L + AL + G + VY+ S+ + +K Sbjct: 485 LNYVFSKAELKFSMLEKLLTTMHKALIKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKA 544 Query: 1605 LNLRQRRWMELLKDYDITILY 1667 L +R WM L+D I Y Sbjct: 545 LPIRWITWMTYLEDPRIQFHY 565 >gb|AAF64414.1|AF201902_2 (AF201902) Pol [equine foamy virus] Length = 1153 Score = 83.9 bits (204), Expect = 1e-013 Identities = 83/350 (23%), Positives = 148/350 (41%), Gaps = 6/350 (1%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S H G MY + +WW + +DI +++ C NC ++ +P + + Sbjct: 817 SGHLGKNTMYIKILNKYWWPNLIKDISKYIRTCTNCIITNTDN-VPNKSYIVQEKTGLPF 875 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKV-TYNAEK*AKLYISEVIRLHG 2410 +K MD++ P + G Y + VIVD T P K T NA A +++ Sbjct: 876 QKYYMDYIGPLPPSDGYYH-VLVIVDEGTGYTWLYPTKAQTANATVKALNHLTGT----A 930 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 +P + SD+ + FTS ++ G +++ + +HP + G+ ER ++ +L +V Sbjct: 931 IPKVLHSDQGSAFTSATLVAWAKDKGIQMEYSSPYHPQSSGKVERKNSEIKRLLTKLLVG 990 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRES 2770 W +P + + NN+ + I P + +YG C P + Sbjct: 991 RPTKWYPLIPTVQLALNNTPNAKIGKTPHQLMYGVDCNLPF-----------------QD 1033 Query: 2771 LDKVKCIQEKHLAAQSRKKKYVVQKVRD-FEFMEGEQVLLKVSPMKGVM---WFGKRGKL 2938 L + +E+ LA V+Q++R E L K +P G++ + +L Sbjct: 1034 LSTLDLTREEQLA--------VLQEIRTALEQPAQHPTLPKWTPCPGLLVQERVNRPAQL 1085 Query: 2939 SPRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTYHGD-GNYIIRWDSV 3103 P++ P +LK + +A P G + V ++ KT H D N R D+V Sbjct: 1086 RPKWKKPTPILKVLNPKTVVIAGPGGQERI--VSIDNLKKTPHHDTSNDSTRMDAV 1139 Score = 75.3 bits (182), Expect = 4e-011 Identities = 56/232 (24%), Positives = 109/232 (46%), Gaps = 1/232 (0%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +G + SP +PV V K DG +RM +DY+ +NKV H +L + L Sbjct: 185 QGVLKQQTSPMNTPVYPVPKPDGRWRMVLDYRAVNKVTPAIATQNCHSASLLNTLYRGQY 244 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 + +D ++G+ I+ +D T+F + Y + + G N+PA F + + +LK Sbjct: 245 KTTLDLANGFWAHPIQESDQWITSFTWNGKSYVWTTLPQGFLNSPALFTADVVDLLKDIP 304 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLG-HVVS 1091 + V +++DD+ + + +EH + ++ + L+ K + V FLG + Sbjct: 305 N--VEVYVDDVYFSNDTEEEHLKTMDLLFQKLQTAGYIVSLKKSKLGQHTVDFLGFQITQ 362 Query: 1092 KD*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNL 1250 + D YK +++ P + ++S +GL ++ R F+ +S + + L L Sbjct: 363 TGRGLTDSYKSKLL-DITPPNTLKQLQSILGLLNFARNFIPNYSELITPLYQL 414 >dbj|BAA99310.1| (AP000397) orf764 [Beta vulgaris var. altissima] Length = 764 Score = 83.9 bits (204), Expect = 1e-013 Identities = 84/333 (25%), Positives = 148/333 (44%), Gaps = 12/333 (3%) Frame = +2 Query: 2066 GATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRM--PIPKFKWEK 2239 G + +++ +W M +D + +V +C CQK P L + PIP +W Sbjct: 427 GKALSHEVMRRGNYWPTMVKDCLRYVKKCDKCQKFAPVMNQPANDLCPILNPIPFAQW-- 484 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 MD + F G + V VD TK P K A + +I G+P Sbjct: 485 -GMDILGPFTTASGGRKYLIVAVDYFTKWIEAEPTKFI-KARQVRSFIWKNIITRFGIPQ 542 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I+ D T+F K E + HP ++GQ+E + + L+ + E G Sbjct: 543 CIVFDHGTQFDCDTIKDYCAEFKIKFASAAVCHPQSNGQAEAANKQILLALQKKLEEHKG 602 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIE-WFDAFEVRPWGTD----LLR 2764 W +P ++ + + + +PF +G PIE +F V+ + + L+R Sbjct: 603 LWADLVPEVLWANRTTEKGATGKSPFSLAFGAEAVVPIEVGLPSFRVQHYDPEVNEQLMR 662 Query: 2765 ESLDKVKCIQEK---HLAAQ-SRKKKYVVQKVRDFEFMEGEQVLLKVSPM-KGVMWFGKR 2929 E+LD++ ++ + LAAQ +R + ++VR EG+ VL + + + KG Sbjct: 663 EALDQLPEMRLQAALKLAAQKNRMSRIYNRRVRHRPLTEGDLVLRRTAAVGKG----NVH 718 Query: 2930 GKLSPRYIGPFKVLKRVGEVAYELALPPGLSGVHPVFYVSMLKTY 3064 GK + + GP+++ ++V +Y+L G + F +LK Y Sbjct: 719 GKFTANWEGPYQICEQVAPGSYKLMTVEG-EPLKNSFNADVLKKY 762 Score = 44.9 bits (104), Expect = 0.053 Identities = 55/231 (23%), Positives = 93/231 (39%), Gaps = 7/231 (3%) Frame = +3 Query: 1203 RFVKGFSSVASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCD 1382 RF+ + A L + + W +E +F + L P + P EG+ +Y Sbjct: 12 RFISKSADKALPFFQLLRGNKTFKWGEEERTAFAAIKEHLKKLPTVTRPKEGERLQLYIS 71 Query: 1383 ASYWGLGAALM----KEKNVIAYASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVK 1550 AS + A L+ K + I + S L E+ YP + AV+ A ++ + Y Sbjct: 72 ASPKTVAAVLLVERIKTQLPIYFVSHVLNEAEQRYPLLEKMSLAVMIAARKLRPYFDAHT 131 Query: 1551 CEVYTDHRSLQYVFTQKYLNLRQRRWMELLKDYDITILYHPE---KANVVADALSRKAGS 1721 +V ++H L+ + + R RW L ++++ Y P KA +AD + Sbjct: 132 IQVLSNH-PLEKALQKLDTSGRLLRWAVELSEFEVE--YKPRTAIKAQALADFIVE---- 184 Query: 1722 MESLAHSQVSRRPLAREVQTLANDLMRLEVNEKGGFLAYVEERSSFLDKIKGKQFNDE 1895 A + P+ V LA D + G + E + F IK K N+E Sbjct: 185 ----ASYEEEEEPVG--VWKLAVDGSAAQTGSGAGIIMTSPEGNVFEYAIKFKASNNE 236 >emb|CAB53560.1| (AJ006557) reverse transcriptase [Anopheles funestus] Length = 361 Score = 83.1 bits (202), Expect = 2e-013 Identities = 45/170 (26%), Positives = 78/170 (45%) Frame = +3 Query: 360 SIESVSIVREFLDVFPTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXX 539 ++ + +V E+ DVF ++ + + + L P+ + + Sbjct: 192 TVRLIKVVNEYRDVFALNIKELGCAKSTAISLKLTQ-IEPVYVKPRKLEYAREIMLNEMV 250 Query: 540 XXXXSKGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 + + SP+ SP++ V KK+G FRM IDY+ LN VK+K+P+P ++ +L Sbjct: 251 EELLEAEVIKETDSPYNSPIVLVPKKNGRFRMAIDYRMLNAKTVKDKFPMPDLEQCLQRL 310 Query: 720 QGACTFSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAP 869 GA + +D SGY+Q+ + TAF T H++F M F P Sbjct: 311 SGAKMYITLDLFSGYYQIPVHQDSQDYTAFSTPSGHFKFTRMPFASPTQP 360 >gb|AAB68770.1| (U94514) pol polyprotein [bovine syncytial virus] Length = 1220 Score = 83.1 bits (202), Expect = 2e-013 Identities = 64/232 (27%), Positives = 112/232 (47%), Gaps = 1/232 (0%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +G R S +PV V K DG +RM +DY+++NKV H ++ + L Sbjct: 185 QGVLRQQNSEMNTPVYPVPKADGRWRMVLDYREVNKVTPLVATQNCHSASILNTLYRGPY 244 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 S +D ++G+ I+ D TAF + Y + V+ G N+PA F + + ILK Sbjct: 245 KSTLDLANGFWAHPIKPEDYWITAFTWGGKTYCWTVLPQGFLNSPALFTADVVDILKDIP 304 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 + V +++DD+ V S + +EH L + L K + + V FLG +S+ Sbjct: 305 N--VQVYVDDVYVSSATEQEHLDILETIFNRLSTAGYIVSLKKSKLAKETVEFLGFSISQ 362 Query: 1095 D-*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNL 1250 + + D YK + + + PT + ++S +GL ++ R F+ F+ + + L L Sbjct: 363 NGRGLTDSYK-QKLMDLQPPTTLRQLQSILGLINFARNFLPNFAELVAPLYQL 414 Score = 80.0 bits (194), Expect = 1e-012 Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 1/228 (0%) Frame = +2 Query: 2054 STHPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKW 2233 S H G + + L+Q +WW RM D V C C + +Q P L +P + Sbjct: 821 SAHLGRSALLLKLQQKYWWPRMHIDASRIVLNCTVCAQTNSTNQKPRPPLV-IPHDTKPF 879 Query: 2234 EKIAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKV-TYNAEK*AKLYISEVIRLHG 2410 + MD++ P + G Y VIVD T P K T NA A +++ Sbjct: 880 QVWYMDYIGPLPPSNG-YQHALVIVDAGTGFTWIYPTKAQTANATVKALTHLTGT----A 934 Query: 2411 VPLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVE 2590 VP + SD+ FTS ++ G +++ +HP + G+ ER ++ +L + Sbjct: 935 VPKVLHSDQGPAFTSSILADWAKDRGIQLEHSAPYHPQSSGKVERKNSEIKRLLTKLLAG 994 Query: 2591 FAGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEV 2737 W +P+ + + NN+ + P + +YG C P E D ++ Sbjct: 995 RPTKWYPLIPIVQLALNNTPNTRQKYTPHQLMYGADCNLPFENLDTLDL 1043 >gb|AAD23028.1|AC006585_23 (AC006585) putative MADS-box protein [Arabidopsis thaliana] Length = 210 Score = 82.7 bits (201), Expect = 2e-013 Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 5/129 (3%) Frame = +2 Query: 8129 SSMKICIGHKGIVIARIQSSRN*QVTVSKRLIGLFKKVSCLCTLCGAYVAVVIFSSSNKI 8308 S K IG + I + +I+ + QVT SKR GLFKK S LCTLCGA + +++FS + K Sbjct: 2 SKKKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKP 61 Query: 8309 YSREHPSAEFIVDKFLGENHHLDFDGPNPSVLAHQNVNVD-----EINN*LNMLKNSLEQ 8473 +S HPS E ++D+++ N N S+ Q + E+N L + + +E+ Sbjct: 62 FSFGHPSVESVLDRYVSRN--------NMSLAQSQQLQGSPAASCELNMQLTHILSEVEE 113 Query: 8474 QKKHSKSLQGIRKE 8515 +KK ++++ +RKE Sbjct: 114 EKKKGQAMEEMRKE 127 >gb|AAA46122.1| (M54978) pol protein [Human spumaretrovirus] Length = 343 Score = 81.5 bits (198), Expect = 5e-013 Identities = 53/226 (23%), Positives = 99/226 (43%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G + +WW M++D+V+ + +C C ++ G L R P+ ++K Sbjct: 77 HTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNKASGPIL-RPDRPQKPFDK 135 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 +D++ P + G Y + V+VD +T P K + A + V+ +P Sbjct: 136 FFIDYIGPLPPSQG-YLYVLVVVDGMTGFTWLYPTKAPSTS---ATVKSLNVLTSIAIPK 191 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I SD+ FTS + +E G ++ T +HP + + ER ++ +L +V Sbjct: 192 VIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPT 251 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEV 2737 W LP+ + + NN+Y + P + L+G +P D ++ Sbjct: 252 KWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTPFANQDTLDL 297 >gb|AAB48112.1| (U21247) pro-pol protein [Human spumaretrovirus] Length = 1143 Score = 81.5 bits (198), Expect = 5e-013 Identities = 53/226 (23%), Positives = 99/226 (43%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G + +WW M++D+V+ + +C C ++ G L R P+ ++K Sbjct: 817 HTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNKASGPIL-RPDRPQKPFDK 875 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 +D++ P + G Y + V+VD +T P K + A + V+ +P Sbjct: 876 FFIDYIGPLPPSQG-YLYVLVVVDGMTGFTWLYPTKAPSTS---ATVKSLNVLTSIAIPK 931 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I SD+ FTS + +E G ++ T +HP + + ER ++ +L +V Sbjct: 932 VIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPT 991 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEV 2737 W LP+ + + NN+Y + P + L+G +P D ++ Sbjct: 992 KWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTPFANQDTLDL 1037 Score = 80.0 bits (194), Expect = 1e-012 Identities = 88/371 (23%), Positives = 158/371 (41%), Gaps = 10/371 (2%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +G P S +PV V K DG +RM +DY+++NK H + + Sbjct: 188 QGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKY 247 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 + +D ++G+ I TAF + + Y + + G N+PA F + + +LK Sbjct: 248 KTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEIP 307 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 + V +++DDI + KEH L V ++L + K E V FLG ++K Sbjct: 308 N--VQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITK 365 Query: 1095 D-*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + D +K +++ + P ++ ++S +GL ++ R F+ F+ + L NL + Sbjct: 366 EGRGLTDTFKTKLL-NITPPKDLKQLQSILGLLNFARNFIPNFAELVQPLYNLIASAKGK 424 Query: 1272 V--WSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE--KNVIAY 1439 WS+E + + L TA L + + ++ + S E K I Y Sbjct: 425 YIEWSEENTKQLNMVIEALNTASNLEERLPEQRLVIKVNTSPSAGYVRYYNETGKKPIMY 484 Query: 1440 ASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVF-----TQKY 1604 + E + + L + AL + G + VY+ S+ + +K Sbjct: 485 LNYVFSKAELKFSMLEKLLTTMHKALIKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKA 544 Query: 1605 LNLRQRRWMELLKDYDITILY 1667 L +R WM L+D I Y Sbjct: 545 LPIRWITWMTYLEDPRIQFHY 565 >emb|CAA68999.1| (Y07724) pol [Human foamy virus] Length = 1143 Score = 81.5 bits (198), Expect = 5e-013 Identities = 53/226 (23%), Positives = 99/226 (43%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G + +WW M++D+V+ + +C C ++ G L R P+ ++K Sbjct: 817 HTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNKASGPIL-RPDRPQKPFDK 875 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 +D++ P + G Y + V+VD +T P K + A + V+ +P Sbjct: 876 FFIDYIGPLPPSQG-YLYVLVVVDGMTGFTWLYPTKAPSTS---ATVKSLNVLTSIAIPK 931 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I SD+ FTS + +E G ++ T +HP + + ER ++ +L +V Sbjct: 932 VIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPT 991 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEV 2737 W LP+ + + NN+Y + P + L+G +P D ++ Sbjct: 992 KWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTPFANQDTLDL 1037 Score = 80.0 bits (194), Expect = 1e-012 Identities = 88/371 (23%), Positives = 158/371 (41%), Gaps = 10/371 (2%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +G P S +PV V K DG +RM +DY+++NK H + + Sbjct: 188 QGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKY 247 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 + +D ++G+ I TAF + + Y + + G N+PA F + + +LK Sbjct: 248 KTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEIP 307 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 + V +++DDI + KEH L V ++L + K E V FLG ++K Sbjct: 308 N--VQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITK 365 Query: 1095 D-*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + D +K +++ + P ++ ++S +GL ++ R F+ F+ + L NL + Sbjct: 366 EGRGLTDTFKTKLL-NITPPKDLKQLQSILGLLNFARNFIPNFAELVQPLYNLIASAKGK 424 Query: 1272 V--WSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE--KNVIAY 1439 WS+E + + L TA L + + ++ + S E K I Y Sbjct: 425 YIEWSEENTKQLNMVIEALNTASNLEERLPEQRLVIKVNTSPSAGYVRYYNETGKKPIMY 484 Query: 1440 ASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVF-----TQKY 1604 + E + + L + AL + G + VY+ S+ + +K Sbjct: 485 LNYVFSKAELKFSMLEKLLTTMHKALIKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKA 544 Query: 1605 LNLRQRRWMELLKDYDITILY 1667 L +R WM L+D I Y Sbjct: 545 LPIRWITWMTYLEDPRIQFHY 565 >emb|CAA68997.1| (Y07723) pol [Human foamy virus] Length = 1143 Score = 81.5 bits (198), Expect = 5e-013 Identities = 53/226 (23%), Positives = 99/226 (43%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G + +WW M++D+V+ + +C C ++ G L R P+ ++K Sbjct: 817 HTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNKASGPIL-RPDRPQKPFDK 875 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 +D++ P + G Y + V+VD +T P K + A + V+ +P Sbjct: 876 FFIDYIGPLPPSQG-YLYVLVVVDGMTGFTWLYPTKAPSTS---ATVKSLNVLTSIAIPK 931 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I SD+ FTS + +E G ++ T +HP + + ER ++ +L +V Sbjct: 932 VIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPT 991 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEV 2737 W LP+ + + NN+Y + P + L+G +P D ++ Sbjct: 992 KWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTPFANQDTLDL 1037 Score = 80.0 bits (194), Expect = 1e-012 Identities = 88/371 (23%), Positives = 158/371 (41%), Gaps = 10/371 (2%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +G P S +PV V K DG +RM +DY+++NK H + + Sbjct: 188 QGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKY 247 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 + +D ++G+ I TAF + + Y + + G N+PA F + + +LK Sbjct: 248 KTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEIP 307 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 + V +++DDI + KEH L V ++L + K E V FLG ++K Sbjct: 308 N--VQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITK 365 Query: 1095 D-*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + D +K +++ + P ++ ++S +GL ++ R F+ F+ + L NL + Sbjct: 366 EGRGLTDTFKTKLL-NITPPKDLKQLQSILGLLNFARNFIPNFAELVQPLYNLIASAKGK 424 Query: 1272 V--WSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE--KNVIAY 1439 WS+E + + L TA L + + ++ + S E K I Y Sbjct: 425 YIEWSEENTKQLNMVIEALNTASNLEERLPEQRLVIKVNTSPSAGYVRYYNETGKKPIMY 484 Query: 1440 ASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVF-----TQKY 1604 + E + + L + AL + G + VY+ S+ + +K Sbjct: 485 LNYVFSKAELKFSMLEKLLTTMHKALIKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKA 544 Query: 1605 LNLRQRRWMELLKDYDITILY 1667 L +R WM L+D I Y Sbjct: 545 LPIRWITWMTYLEDPRIQFHY 565 >emb|CAA69003.1| (Y07725) pol [Human foamy virus] Length = 1143 Score = 81.5 bits (198), Expect = 5e-013 Identities = 53/226 (23%), Positives = 99/226 (43%) Frame = +2 Query: 2060 HPGATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPIPKFKWEK 2239 H G + +WW M++D+V+ + +C C ++ G L R P+ ++K Sbjct: 817 HTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNKASGPIL-RPDRPQKPFDK 875 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*AKLYISEVIRLHGVPL 2419 +D++ P + G Y + V+VD +T P K + A + V+ +P Sbjct: 876 FFIDYIGPLPPSQG-YLYVLVVVDGMTGFTWLYPTKAPSTS---ATVKSLNVLTSIAIPK 931 Query: 2420 PIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAG 2599 I SD+ FTS + +E G ++ T +HP + + ER ++ +L +V Sbjct: 932 VIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPT 991 Query: 2600 HWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEV 2737 W LP+ + + NN+Y + P + L+G +P D ++ Sbjct: 992 KWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTPFANQDTLDL 1037 Score = 80.0 bits (194), Expect = 1e-012 Identities = 88/371 (23%), Positives = 158/371 (41%), Gaps = 10/371 (2%) Frame = +3 Query: 555 KGFTRPSASPWGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACT 734 +G P S +PV V K DG +RM +DY+++NK H + + Sbjct: 188 QGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKY 247 Query: 735 FSKIDFSSGYHQLKIRATDVPKTAFWTRYRHYEFLVMSFGLTNAPAAFMSLMNGILKPYL 914 + +D ++G+ I TAF + + Y + + G N+PA F + + +LK Sbjct: 248 KTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEIP 307 Query: 915 DLFVILFIDDILVYSKSNKEHE*HLRIVLEMLREKKLYAKFSKCEFWLD*VSFLGHVVSK 1094 + V +++DDI + KEH L V ++L + K E V FLG ++K Sbjct: 308 N--VQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITK 365 Query: 1095 D-*VMVDPYKIEVVKSWERPTNVT*VRSFVGLASYYRRFVKGFSSVASQLTNLTKQSVPS 1271 + + D +K +++ + P ++ ++S +GL ++ R F+ F+ + L NL + Sbjct: 366 EGRGLTDTFKTKLL-NITPPKDLKQLQSILGLLNFARNFIPNFAELVQPLYNLIASAKGK 424 Query: 1272 V--WSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAALMKE--KNVIAY 1439 WS+E + + L TA L + + ++ + S E K I Y Sbjct: 425 YIEWSEENTKQLNMVIEALNTASNLEERLPEQRLVIKVNTSPSAGYVRYYNETGKKPIMY 484 Query: 1440 ASRQLKVHERNYPTHDLELAAVVFALKQWKHYLYGVKCEVYTDHRSLQYVF-----TQKY 1604 + E + + L + AL + G + VY+ S+ + +K Sbjct: 485 LNYVFSKAELKFSMLEKLLTTMHKALIKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKA 544 Query: 1605 LNLRQRRWMELLKDYDITILY 1667 L +R WM L+D I Y Sbjct: 545 LPIRWITWMTYLEDPRIQFHY 565 >gb|AAD03367.1| (AC005957) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1329 Score = 80.8 bits (196), Expect = 9e-013 Identities = 46/138 (33%), Positives = 69/138 (49%), Gaps = 1/138 (0%) Frame = +3 Query: 453 IDLEPGTRPISIPSYTMAPTXXXXXXXXXXXXXSKGFTRPSASP-WGSPVLFVKKKDGSF 629 ++++P +P+ + P G R P W + + VKKK+G + Sbjct: 424 LNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLANPVVVKKKNGKW 483 Query: 630 RMCIDYKQLNKVNVKNKYPLPHIDNLFDQLQGACTFSKIDFSSGYHQLKIRATDVPKTAF 809 R+C+D+ LNK K+ +PLPHID L + G S +D SGY+Q+ + D KT+F Sbjct: 484 RVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQILMNPEDQEKTSF 543 Query: 810 WTRYRHYEFLVMSFGLTNA 866 T Y + VM FGL NA Sbjct: 544 ITECGTYYYKVMPFGLKNA 562 Score = 57.8 bits (137), Expect = 7e-006 Identities = 75/312 (24%), Positives = 123/312 (39%), Gaps = 15/312 (4%) Frame = +2 Query: 2066 GATKMYRDLKQHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRM--PIPKFKWEK 2239 G + ++ K ++W + D + +C CQK P L + P P KW Sbjct: 1004 GRSLAFKVRKYGYYWPTLVADCEAYARKCEQCQKHAPLILQPAELLTTVSAPYPFMKW-- 1061 Query: 2240 IAMDFVVGFPKTIGKYDSIWVIVDRLTKSAHFIPVKVTYNAEK*A--KLYISEVIRLHGV 2413 MD IV L S + N ++I HG+ Sbjct: 1062 -LMD-----------------IVGPLHVSTRGVEAAAYSNITHVQVWNFIWKDIICRHGL 1103 Query: 2414 PLPIISDRCTKFTSMFWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEF 2593 P I++D ++F S ++ EE R+ T +P +GQ+E + + L+ + + Sbjct: 1104 PYEIVTDNGSQFISEQFEVFCEEWQIRLSHSTPRYPQGNGQAEAMNKTIISNLKKKLNAY 1163 Query: 2594 AGHWDSFLPLAEFSYNNSYQSSIDMAPFEALYGRRCRSP--IEWFDAFEVR-PWG-TDLL 2761 G W L ++ + + + D PF +YG P I+ A +R P T+ Sbjct: 1164 KGAWFGELQNVLWAVRTTPRRATDETPFSLIYGMEAVIPAEIKVPSARRIRNPQNETENN 1223 Query: 2762 RESLDKVKCIQEKHLAAQSRKK-------KYVVQKVRDFEFMEGEQVLLKVSPMKGVMWF 2920 +D + I E+ A +R + +Y VR+ F G VL +V K Sbjct: 1224 EMIIDVIDTIDERRNRALARMQNYHNAGARYYNSNVRNRSFEVGTLVLRRVQQNKAEK-- 1281 Query: 2921 GKRGKLSPRYIGPFKVLKRVGEVAYEL 3001 GKL + GP+K+ V Y L Sbjct: 1282 -GAGKLGISWEGPYKITHVVRNGVYRL 1307 >gb|AAC27145.1| (AC004512) Contains similarity to gb|L46397 MADS box protein (ZAG3) from Zea mays. [Arabidopsis thaliana] Length = 226 Score = 76.1 bits (184), Expect = 2e-011 Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 9/120 (7%) Frame = +2 Query: 8135 MKICIGHKGIVIARIQSSRN*QVTVSKRLIGLFKKVSCLCTLCGAYVAVVIFSSSNKIYS 8314 +K +G + + I ++ N QVT SKR GLFKK S CTLC A +A+++FS + K++S Sbjct: 2 VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61 Query: 8315 REHPSAEFIVDKFLGENHHLDFDGPNPSVLAHQNVNVDE---------INN*LNMLKNSL 8467 HP+ + ++D F G V+ H N N+DE +N +K + Sbjct: 62 FGHPNVDVLLDHFRG------------CVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEV 109 Query: 8468 EQQKKHSKS 8494 E+++K+ +S Sbjct: 110 EKEQKNKQS 118 Score = 38.3 bits (87), Expect = 5.3 Identities = 21/55 (38%), Positives = 30/55 (54%) Frame = +1 Query: 15406 MKICIGTKRILITRIRNSKN*QVTFSKQLIGLFKKASRDMHFMWYLCCCCDFLIS 15570 +K +G +++ I ++ N QVTFSK+ GLFKKAS C CD I+ Sbjct: 2 VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASE-------FCTLCDAKIA 49 >dbj|BAB00646.1| (AP002804) EST C72786(E2258) corresponds to a region of the predicted gene.~Similar to Sorghum bicolor Gypsy-Ty3 type retrotransposon RetroSor1. (AF098806) [Oryza sativa] Length = 1473 Score = 73.7 bits (178), Expect = 1e-010 Identities = 75/292 (25%), Positives = 126/292 (42%), Gaps = 7/292 (2%) Frame = +2 Query: 2096 QHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPI--PKFKWEKIAMDFVVGFP 2269 Q F+W V+ V +C CQ + P ALQ +P+ P W +D + F Sbjct: 1177 QGFYWPTALNYAVDLVRRCRACQFHARQTHQPAQALQTIPLSWPFAVW---GLDILGPFR 1233 Query: 2270 KTIGKYDSIWVIVDRLTKSAHFIPV-KVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTK 2446 + G ++ ++V VD+ TK PV K+ ++ A +I + GVP II+D T+ Sbjct: 1234 RAPGGFEYLYVAVDKFTKWPEAYPVIKIDKHS---ALKFIRGITARFGVPNRIITDNGTQ 1290 Query: 2447 FTSMFWKTLHEELGTRVDLCTEFHPHTDGQSER-TIQVLEDMLRACVVEFAGHWDSF--- 2614 FTS + E++G ++ + HP ++GQ ER ++L+ + H DS+ Sbjct: 1291 FTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEE 1350 Query: 2615 LPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKCIQ 2794 LP ++ + + PF +YG +A E R L Sbjct: 1351 LPAVLWANRTTPSRATGETPFFLVYGA---------EALEERRRRAAL------------ 1389 Query: 2795 EKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVL 2971 + Q ++Y + VR + VL +V G+ KLSP + GP++V+ Sbjct: 1390 -RATRYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGL------SKLSPMWEGPYRVI 1441 Score = 70.2 bits (169), Expect = 1e-009 Identities = 44/118 (37%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Frame = +3 Query: 372 VSIVREFLDVF---PTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXX 542 VS +R DVF P D+PG+P + I+ + + PG RP+ AP Sbjct: 507 VSFLRANADVFAWRPADMPGVPREV-IEHRLAVRPGARPVRQKVRRQAPERQAFIREEVA 565 Query: 543 XXXSKGFTRPSASP-WGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 GF R P W + + V K +G RMCIDY LNK K+ YPLP ID D Sbjct: 566 RLLEAGFIREVIHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQFVDST 625 Query: 720 QG 725 G Sbjct: 626 AG 627 Score = 40.6 bits (93), Expect = 1.0 Identities = 21/66 (31%), Positives = 37/66 (55%) Frame = +3 Query: 1230 ASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAA 1409 A L L K+S P W++E E +F +L L++ P+L P + ++Y A+ + AA Sbjct: 677 ALPLFKLLKRSGPFTWTEEAERAFTQLKAYLSSPPVLVAPEPDEPLLLYLAATPQVVSAA 736 Query: 1410 LMKEKN 1427 L+ E++ Sbjct: 737 LVVERD 742 >dbj|BAA87844.1| (AP000815) EST C72786(E2258) corresponds to a region of the predicted gene.~Similar to Sorghum bicolor Gypsy-Ty3 type retrotransposon RetroSor1. (AF098806) [Oryza sativa] Length = 1473 Score = 73.7 bits (178), Expect = 1e-010 Identities = 75/292 (25%), Positives = 126/292 (42%), Gaps = 7/292 (2%) Frame = +2 Query: 2096 QHFWWSRMKRDIVEFVAQCPNCQKVKYEHQMPGGALQRMPI--PKFKWEKIAMDFVVGFP 2269 Q F+W V+ V +C CQ + P ALQ +P+ P W +D + F Sbjct: 1177 QGFYWPTALNYAVDLVRRCRACQFHARQTHQPAQALQTIPLSWPFAVW---GLDILGPFR 1233 Query: 2270 KTIGKYDSIWVIVDRLTKSAHFIPV-KVTYNAEK*AKLYISEVIRLHGVPLPIISDRCTK 2446 + G ++ ++V VD+ TK PV K+ ++ A +I + GVP II+D T+ Sbjct: 1234 RAPGGFEYLYVAVDKFTKWPEAYPVIKIDKHS---ALKFIRGITARFGVPNRIITDNGTQ 1290 Query: 2447 FTSMFWKTLHEELGTRVDLCTEFHPHTDGQSER-TIQVLEDMLRACVVEFAGHWDSF--- 2614 FTS + E++G ++ + HP ++GQ ER ++L+ + H DS+ Sbjct: 1291 FTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEE 1350 Query: 2615 LPLAEFSYNNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTDLLRESLDKVKCIQ 2794 LP ++ + + PF +YG +A E R L Sbjct: 1351 LPAVLWANRTTPSRATGETPFFLVYGA---------EALEERRRRAAL------------ 1389 Query: 2795 EKHLAAQSRKKKYVVQKVRDFEFMEGEQVLLKVSPMKGVMWFGKRGKLSPRYIGPFKVL 2971 + Q ++Y + VR + VL +V G+ KLSP + GP++V+ Sbjct: 1390 -RATRYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGL------SKLSPMWEGPYRVI 1441 Score = 70.2 bits (169), Expect = 1e-009 Identities = 44/118 (37%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Frame = +3 Query: 372 VSIVREFLDVF---PTDLPGMPPDRDIDFCIDLEPGTRPISIPSYTMAPTXXXXXXXXXX 542 VS +R DVF P D+PG+P + I+ + + PG RP+ AP Sbjct: 507 VSFLRANADVFAWRPADMPGVPREV-IEHRLAVRPGARPVRQKVRRQAPERQAFIREEVA 565 Query: 543 XXXSKGFTRPSASP-WGSPVLFVKKKDGSFRMCIDYKQLNKVNVKNKYPLPHIDNLFDQL 719 GF R P W + + V K +G RMCIDY LNK K+ YPLP ID D Sbjct: 566 RLLEAGFIREVIHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRIDQFVDST 625 Query: 720 QG 725 G Sbjct: 626 AG 627 Score = 40.6 bits (93), Expect = 1.0 Identities = 21/66 (31%), Positives = 37/66 (55%) Frame = +3 Query: 1230 ASQLTNLTKQSVPSVWSDECEESFQKLNTLLTTAPILNLPVEGKNFIVYCDASYWGLGAA 1409 A L L K+S P W++E E +F +L L++ P+L P + ++Y A+ + AA Sbjct: 677 ALPLFKLLKRSGPFTWTEEAERAFTQLKAYLSSPPVLVAPEPDEPLLLYLAATPQVVSAA 736 Query: 1410 LMKEKN 1427 L+ E++ Sbjct: 737 LVVERD 742 >emb|CAB16834.1| (Z99708) putative MADS-box protein [Arabidopsis thaliana] Length = 248 Score = 73.0 bits (176), Expect = 2e-010 Identities = 36/92 (39%), Positives = 56/92 (60%) Frame = +2 Query: 8150 GHKGIVIARIQSSRN*QVTVSKRLIGLFKKVSCLCTLCGAYVAVVIFSSSNKIYSREHPS 8329 G + I + ++++ N QVT SKR GLFKK S LCTL GA + +++FS K++S HPS Sbjct: 7 GRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSFGHPS 66 Query: 8330 AEFIVDKFLGENHHLDFDGPNPSVLAHQNVNV 8425 + ++ +F NH N +++ HQN N+ Sbjct: 67 VQELIHRFSNPNH-------NSAIVHHQNNNL 91 Score = 36.4 bits (82), Expect(2) = 0.001 Identities = 17/32 (53%), Positives = 23/32 (71%) Frame = +1 Query: 15421 GTKRILITRIRNSKN*QVTFSKQLIGLFKKAS 15516 G ++I + ++ N N QVTFSK+ GLFKKAS Sbjct: 7 GRQKIEMKKMENESNLQVTFSKRRFGLFKKAS 38 Score = 33.2 bits (74), Expect(2) = 0.001 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +2 Query: 15506 KRQVEICTLCGTYVAVVIF*SRHKVHSCGHPSTR 15607 K+ E+CTL G + +++F KV S GHPS + Sbjct: 35 KKASELCTLSGAEILLIVFSPGGKVFSFGHPSVQ 68 >emb|CAB80325.1| (AL161589) putative MADS-box protein [Arabidopsis thaliana] Length = 248 Score = 73.0 bits (176), Expect = 2e-010 Identities = 36/92 (39%), Positives = 56/92 (60%) Frame = +2 Query: 8150 GHKGIVIARIQSSRN*QVTVSKRLIGLFKKVSCLCTLCGAYVAVVIFSSSNKIYSREHPS 8329 G + I + ++++ N QVT SKR GLFKK S LCTL GA + +++FS K++S HPS Sbjct: 7 GRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSFGHPS 66 Query: 8330 AEFIVDKFLGENHHLDFDGPNPSVLAHQNVNV 8425 + ++ +F NH N +++ HQN N+ Sbjct: 67 VQELIHRFSNPNH-------NSAIVHHQNNNL 91 Score = 36.4 bits (82), Expect(2) = 0.001 Identities = 17/32 (53%), Positives = 23/32 (71%) Frame = +1 Query: 15421 GTKRILITRIRNSKN*QVTFSKQLIGLFKKAS 15516 G ++I + ++ N N QVTFSK+ GLFKKAS Sbjct: 7 GRQKIEMKKMENESNLQVTFSKRRFGLFKKAS 38 Score = 33.2 bits (74), Expect(2) = 0.001 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +2 Query: 15506 KRQVEICTLCGTYVAVVIF*SRHKVHSCGHPSTR 15607 K+ E+CTL G + +++F KV S GHPS + Sbjct: 35 KKASELCTLSGAEILLIVFSPGGKVFSFGHPSVQ 68 >emb|CAA67548.1| (X99085) integrase [Ascobolus immersus] Length = 145 Score = 71.0 bits (171), Expect = 7e-010 Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Frame = +2 Query: 2459 FWKTLHEELGTRVDLCTEFHPHTDGQSERTIQVLEDMLRACVVEFAGHWDSFLPLAEFSY 2638 FWK L L L T +HP TDGQ+ER V+E LR V W+S+L LAEF+ Sbjct: 2 FWKALCSYLKIEAKLSTPYHPETDGQTERLNAVMEQYLRTMVNYLQDDWESWLHLAEFAG 61 Query: 2639 NNSYQSSIDMAPFEALYGRRCRSPIEWFDAFEVRPWGTD--LLRESLDKVKCIQEKHLAA 2812 NN + M+PF A YG P+ FD + G+ +E +K K I + HL A Sbjct: 62 NNVASETTGMSPFFANYG---YDPLWHFDFSQTPAEGSKAATAKELAEKFKEITD-HLRA 117 Query: 2813 QSRKKKYVVQKVRD 2854 + + ++ Q+ D Sbjct: 118 EMLRAQHRQQEQAD 131 Database: nr Posted date: Oct 27, 2000 11:02 AM Number of letters in database: 197,985,706 Number of sequences in database: 635,529 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1380397563 Number of Sequences: 635529 Number of extensions: 210373403 Number of successful extensions: 434585 Number of sequences better than 10.0: 8264 Number of HSP's better than 10.0 without gapping: 1076 Number of HSP's successfully gapped in prelim test: 6688 Number of HSP's that attempted gapping in prelim test: 417663 Number of HSP's gapped (non-prelim): 12190 length of query: 10276 length of database: 197,985,706 effective HSP length: 65 effective length of query: 10210 effective length of database: 156,676,321 effective search space: 1599665237410 effective search space used: 1599665237410 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 85 (37.5 bits) BLASTX 2.0.11 [Jan-20-2000] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi:15987771 (61,382 letters) Database: genpept 635,529 sequences; 197,985,706 total letters Score E Sequences producing significant alignments: (bits) Value gb|AAD27547.1|AF111709_1 (AF111709) polyprotein [Oryza sativa su... 589 0.0 emb|CAA73042.1| (Y12432) polyprotein [Ananas comosus] 611 0.0 dbj|BAA95869.1| (AP002071) Similar to Sorghum bicolor 22 kDa kaf... 582 0.0 gb|AAD20658.1| (AC006570) putative retroelement pol polyprotein ... 555 0.0 gb|AAD22339.1|AC006955_25 (AC006955) putative retroelement pol p... 579 0.0 gb|AAF67363.1| (AF262041) Hypothetical protein T32B20.f [Arabido... 511 0.0 gb|AAD38284.1|AC007789_10 (AC007789) putative polyprotein [Oryza... 584 0.0 dbj|BAA81778.1| (AP000364) Similar to Transposon MAGGY gag and p... 597 e-168 emb|CAB78181.1| (AL161517) putative reverse-transcriptase-like p... 590 e-168 emb|CAB40024.1| (AL049523) putative reverse-transcriptase-like p... 590 e-168 emb|CAB46045.1| (Z97342) retrotransposon like protein [Arabidops... 304 e-167 emb|CAB80961.1| (AL161545) retrotransposon like protein [Arabido... 304 e-167 dbj|BAA89559.1| (AP001072) Similar to polyprotein. (AF061282) [O... 570 e-167 gb|AAD22153.1|AF061282_6 (AF061282) polyprotein [Sorghum bicolor] 581 e-163 gb|AAC26240.1| (AF077407) contains similarity to reverse transcr... 570 e-162 gb|AAD22158.1|AF061282_11 (AF061282) polyprotein [Sorghum bicolor] 551 e-154 gb|AAC69377.1| (AC005398) putative retroelement pol polyprotein ... 534 e-154 gb|AAD17358.1| (AF128395) contains similarity to reverse transcr... 420 e-138 dbj|BAA90795.1| (AP001168) Similar to 22 kDa kafirin cluster; Ty... 355 e-137 gb|AAD37020.1|AC007730_2 (AC007730) putative retroelement pol po... 469 e-135 gb|AAD17356.1| (AF128395) contains similarity to retrovirus-rela... 328 e-132 emb|CAB77942.1| (AL161507) putative reverse transcriptase [Arabi... 328 e-132 gb|AAA33420.1| (L35053) endonuclease [Pyricularia grisea] 323 e-130 dbj|BAA90794.1| (AP001168) Similar to 22 kDa kafirin cluster; Ty... 334 e-126 gb|AAF18642.1|AC006228_13 (AC006228) F5J5.15 [Arabidopsis thaliana] 453 e-125 gb|AAF79348.1|AC007887_7 (AC007887) F15O4.13 [Arabidopsis thaliana] 393 e-107 gb|AAD15321.1| (AC005142) putative reverse transcriptase [Arabid... 389 e-105 emb|CAB77850.1| (AL161497) putative reverse transcriptase [Arabi... 389 e-105 dbj|BAA89466.1| (AB033235) gag-pol polyprotein [Oryza sativa] 386 e-104 gb|AAG12877.1|AC069473_8 (AC069473) gypsy/Ty-3 retroelement poly... 382 e-103 gb|AAD13304.1| (AF119040) polyprotein [Lycopersicon esculentum] 370 1e-099 gb|AAG13508.1|AC068924_13 (AC068924) putative gag-pol polyprotei... 347 4e-098 gb|AAD25146.1|AC006420_1 (AC006420) putative retroelement pol po... 274 9e-095 gb|AAC26251.1| (AF077408) contains similarity to reverse transcr... 271 2e-093 emb|CAB80807.1| (AL161498) putative transposon protein [Arabidop... 271 2e-093 gb|AAF18613.1|AC005171_1 (AC005171) putative retroelement integr... 347 8e-093 dbj|BAA75235.1| (AB014746) polyprotein [Hordeum vulgare] 339 3e-090 gb|AAF13073.1|AC011621_1 (AC011621) putative retroelement pol po... 338 5e-090 dbj|BAA75238.1| (AB014753) polyprotein [Morus bombycis] 334 6e-089 dbj|BAA75236.1| (AB014750) polyprotein [Nicotiana tabacum] 334 8e-089 dbj|BAA75237.1| (AB014751) polyprotein [Ipomoea nil] 320 1e-084 gb|AAD24647.1|AC006220_3 (AC006220) putative retroelement pol po... 317 9e-084 gb|AAC33526.2| (AF030881) pol polyprotein [Takifugu rubripes] 310 9e-082 gb|AAD39271.1|AC007203_3 (AC007203) Similar to reverse-transcri... 215 1e-080 dbj|BAA89272.1| (AB025309) Pol [Alternaria alternata] 302 3e-079 emb|CAA77891.1| (Z11866) Reverse Transcriptase [Cladosporium ful... 301 6e-079 gb|AAF21678.1|AF051915_2 (AF051915) pol polyprotein [Cladosporiu... 301 6e-079 gb|AAA88791.1| (L34658) pol polyprotein [Fusarium oxysporum] 299 2e-078 dbj|BAA78625.1| (AB028236) Pol (reverse transcriptase-RNase H-in... 296 2e-077 emb|CAA25702.1| (X01472) ORF 2, pot. reverse transcriptase [Dros... 294 7e-077 gb|AAF48015.1| (AE003485) CG2485 gene product [Drosophila melano... 291 6e-076 gb|AAF79797.1|AC020646_20 (AC020646) T32E20.30 [Arabidopsis thal... 291 8e-076 emb|CAA80824.1| (Z24451) pol protein [Drosophila ananassae] 288 4e-075 gb|AAF36671.1|AF222049_2 (AF222049) pol protein [Drosophila mela... 288 5e-075 gb|AAD39272.1|AC007203_4 (AC007203) Similar to retrotransposon p... 281 7e-073 emb|CAA08807.1| (AJ009736) Pol protein [Drosophila melanogaster] 280 1e-072 gb|AAF48838.2| (AE003508) CG15054 gene product [Drosophila melan... 278 5e-072 gb|AAA92249.1| (M32662) ORF B (bases 1850-5560) first start codo... 277 1e-071 emb|CAB57796.1| (X03431) ORF2 [Drosophila melanogaster] 273 1e-070 dbj|BAA92704.1| (AB036886) reverse transcriptase [Tricholoma bak... 273 2e-070 gb|AAC28743.1| (U60529) pol-like protein [Ceratitis capitata] 270 1e-069 dbj|BAA92703.1| (AB036885) reverse transcriptase [Tricholoma mag... 270 2e-069 gb|AAG13423.1|AC051634_4 (AC051634) putative plant disease resis... 266 2e-068 gb|AAD27902.1|AC006267_7 (AC006267) putative polyprotein [Arabid... 262 4e-067 emb|CAB81146.1| (AL161510) putative polyprotein [Arabidopsis tha... 262 4e-067 emb|CAA04050.1| (AJ000387) protease [Drosophila melanogaster] 261 7e-067 gb|AAA21442.1| (M77661) putative pol polyprotein [Pyricularia gr... 261 7e-067 emb|CAA65152.1| (X95908) orf [Drosophila melanogaster] 259 3e-066 emb|CAB39733.1| (AJ133521) protease, reverse transcriptase, ribo... 255 4e-065 gb|AAC33318.1| (AF056940) pol polyprotein [Drosophila virilis] 254 9e-065 gb|AAA98435.1| (M34549) POL3 [Saccharomyces cerevisiae] 252 3e-064 emb|CAA97117.1| (Z72895) TY3B [Saccharomyces cerevisiae] 252 3e-064 emb|CAA97115.1| (Z72894) TY3B [Saccharomyces cerevisiae] 252 3e-064 emb|CAA86713.1| (Z46728) YI9910.15, incomplete TY3-2 orfB, len: ... 249 3e-063 gb|AAA35184.1| (M23367) has homology to retroviral pol genes; OR... 249 3e-063 gb|AAA50456.1| (U15406) gag, pol and env protein precursor [Caen... 248 7e-063 gb|AAA35339.1| (M38526) Tf1 protein [Schizosaccharomyces pombe] 246 3e-062 emb|CAB58169.1| (AL035248) tf2-type transposon [Schizosaccharomy... 245 4e-062 emb|CAB11682.1| (Z98978) retrotransposable element tf2 155 kd pr... 245 4e-062 emb|CAA93236.1| (Z69240) retrotransposon Tf2p [Schizosaccharomyc... 245 4e-062 emb|CAB83007.1| (AL162531) retrotransposble element; tf2 type tr... 245 4e-062 emb|CAB57422.1| (AL121764) retrotransposable element tf2 155 kd ... 245 4e-062 emb|CAB42363.1| (AL049769) retrotransposable element tf2 155 kd ... 245 4e-062 emb|CAB60245.1| (AL023518) TF2 type transposable element [Schizo... 245 4e-062 gb|AAA91215.1| (L10324) protease, reverse transcriptase, RNAse H... 245 4e-062 dbj|BAB01983.1| (AP002459) retroelement pol polyprotein-like [Ar... 239 7e-062 emb|CAB61532.1| (AL021815) retrotransposable element; tf2-type t... 242 3e-061 emb|CAB64236.1| (AL035675) retrotransposable element; tf2-type t... 242 3e-061 gb|AAA70219.1| (M12927) unknown protein [Drosophila melanogaster] 239 3e-060 gb|AAC82604.1| (AF033821) Prgag-pol [Drosophila melanogaster] 239 3e-060 emb|CAA27371.1| (X03734) reverse transcriptase-like enzyme (930 ... 237 1e-059 emb|CAA27750.1| (X04132) ORF 4 (RNA2) [Drosophila melanogaster] 236 3e-059 dbj|BAA77816.1| (AB027513) polyprotein [Tricholoma matsutake] 235 6e-059 gb|AAA28600.1| (M38438) reverse transcriptase endonuclease [Dros... 235 6e-059 emb|CAA51084.1| (X72390) ORF2 [Drosophila subobscura] 233 2e-058 gb|AAF24529.1|AC007534_10 (AC007534) F7F22.15 [Arabidopsis thali... 233 2e-058 dbj|BAB10790.1| (AB028613) retroelement pol polyprotein-like [Ar... 230 2e-057 gb|AAB50148.1| (U89994) reverse transcriptase polyprotein [Droso... 228 5e-057 dbj|BAA92424.1| (AB039862) pol (reverse transcriptase-RNase H) [... 228 6e-057 gb|AAA28035.1| (L23646) homology with S. pombe protease; putativ... 226 3e-056 dbj|BAA22787.1| (AB007466) reverse transcriptase-like protein [V... 224 9e-056 emb|CAA32198.1| (X14037) polyprotein [Drosophila melanogaster] 222 4e-055 gb|AAF24531.1|AC007534_12 (AC007534) F7F22.17 [Arabidopsis thali... 221 6e-055 dbj|BAA92706.1| (AB036888) reverse transcriptase [Tricholoma sej... 218 7e-054 dbj|BAA92425.1| (AB039863) pol (reverse transcriptase-RNase H) [... 217 2e-053 gb|AAD04177.1| (AF110183) putative integrase [Oryza sativa] 214 1e-052 dbj|BAB02630.1| (AP002054) retroelement pol polyprotein-like [Ar... 210 1e-051 gb|AAC47271.1| (U09586) protease, reverse transcriptase and RNas... 206 2e-050 dbj|BAA92705.1| (AB036887) reverse transcriptase [Tricholoma por... 199 3e-048 emb|CAA81643.1| (Z27119) blastopia polyprotein [Drosophila melan... 198 5e-048 dbj|BAA24352.1| (AB000279) Pol-like peptide [Alternaria alternata] 198 5e-048 emb|CAB06047.1| (Z83760) COS41.3 [Ciona intestinalis] 196 3e-047 dbj|BAB02140.1| (AP000411) contains similarity to reverse transc... 193 2e-046 gb|AAF79809.1|AC020646_32 (AC020646) T32E20.9 [Arabidopsis thali... 189 3e-045 emb|CAA65970.1| (X97304) ORF V [Strawberry vein banding virus] 189 3e-045 gb|AAF00146.1|AF149813_2 (AF149813) retrotransposon del1-46 homo... 183 2e-043 gb|AAD17351.1| (AF128395) contains similarity to retrovirus-rela... 182 3e-043 emb|CAB77944.1| (AL161508) putative polyprotein [Arabidopsis tha... 182 3e-043 gb|AAG12922.1|AC022456_7 (AC022456) polyprotein, putative; 77260... 181 1e-042 gb|AAF79618.1|AC027665_19 (AC027665) F5M15.26 [Arabidopsis thali... 176 3e-041 gb|AAF18651.1|AC006570_1 (AC006570) putative retroelement pol po... 175 4e-041 gb|AAC28237.1| (AF076274) contains similarity to reverse trancri... 175 7e-041 emb|CAB77891.1| (AL161499) putative transposon protein [Arabidop... 175 7e-041 dbj|BAB08213.2| (AP002539) Similar to Arabidopsis thaliana chrom... 173 2e-040 dbj|BAA96774.2| (AP002521) Similar to Arabidopsis thaliana chrom... 173 2e-040 gb|AAG13430.1|AC051634_11 (AC051634) putative plant disease resi... 171 8e-040 gb|AAC48336.1| (AF017040) Pol [Dictyostelium discoideum] 169 3e-039 gb|AAC39021.1| (AF049230) Pol [Dictyostelium discoideum] 169 3e-039 gb|AAD19780.1| (AC006528) putative retroelement pol polyprotein ... 166 2e-038 gb|AAB71256.1| (AF026205) contains similarity to Pfam domains PF... 166 4e-038 gb|AAB42240.1| (U88169) similar to retrovirus-related POL polypr... 164 8e-038 dbj|BAA84458.1| (AB030283) GAG-POL precursor [Oryza sativa] 164 1e-037 emb|CAA23460.1| (V00141) reading frame (V) [Cauliflower mosaic v... 164 1e-037 emb|CAA55974.1| (X79465) ORF V [Cauliflower mosaic virus] 163 2e-037 gb|AAA62375.1| (M90542) reverse transcriptase [Cauliflower mosai... 163 2e-037 gb|AAD37341.1|AF140604_5 (AF140604) reverse transcriptase [Cauli... 163 2e-037 emb|CAA12930.1| (AJ228325) reverse transcriptase [Ginkgo biloba] 162 3e-037 gb|AAA21736.1| (M90543) reverse transcriptase [Cauliflower mosai... 162 4e-037 gb|AAD22283.1|AC006920_7 (AC006920) putative retroelement pol po... 162 5e-037 dbj|BAB01917.1| (AP001307) contains similarity to amine oxidase~... 82 1e-036 gb|AAC69378.1| (AC005398) putative retroelement pol polyprotein ... 102 2e-036 emb|CAA39967.1| (X56645) ORF 2 [Drosophila virilis] 159 5e-036 gb|AAA46350.1| (M10376) ORF5; putative [Cauliflower mosaic virus] 159 5e-036 gb|AAG15480.1| (AF259976) polyprotein [Oryza sativa subsp. indica] 158 8e-036 gb|AAB03327.1| (U59751) ORF 3 [Cassava vein mosaic virus] 158 8e-036 gb|AAA79873.1| (U20341) ORF III [Cassava vein mosaic virus] 158 8e-036 dbj|BAB03352.1| (AP002486) Similar to Oryza sativa gypsy-type re... 157 1e-035 gb|AAB18334.1| (U75247) reverse transcriptase [Gossypium barbade... 157 1e-035 gb|AAD27571.1|AF114171_12 (AF114171) polyprotein [Sorghum bicolor] 157 1e-035 gb|AAD19359.1| (AF098806) polyprotein [Sorghum bicolor] 157 1e-035 gb|AAA46358.1| (M90541) reverse transcriptase [Cauliflower mosai... 155 4e-035 gb|AAD15474.1| (AC006067) putative retroelement pol polyprotein ... 153 2e-034 gb|AAA03171.1| (L14546) polyprotein [Cacao swollen shoot virus] 153 2e-034 gb|AAD22507.1|AC007045_7 (AC007045) putative retroelement pol po... 150 2e-033 emb|CAA29429.1| (X06034) reverse transcriptose-like protein (AA ... 149 3e-033 gb|AAF02805.1|AC009400_1 (AC009400) hypothetical protein, 3' par... 108 3e-033 gb|AAD11615.1| (AF049110) prpol [Zea mays] 149 4e-033 gb|AAF04184.1|AC011560_25 (AC011560) hypothetical protein; 11806... 108 7e-033 emb|CAA28360.1| (X04658) pot. ORF 5 (AA 1-659) [Carnation etched... 145 6e-032 gb|AAF63114.1|AC006423_15 (AC006423) Hypothetical protein [Arabi... 143 2e-031 emb|CAA05264.1| (AJ002234) polyprotein, cleavage products includ... 141 7e-031 gb|AAD19758.1| (AC006413) putative Ty3-gypsy-like retroelement p... 136 4e-029 gb|AAD28680.1|AC007187_4 (AC007187) putative retroelement pol po... 132 4e-028 emb|CAB53471.1| (AJ243733) polymerase polyprotein [Lampetra fluv... 132 6e-028 gb|AAD48069.1|AF160181_1 (AF160181) contains similarity to Pfam ... 131 1e-027 emb|CAB81130.1| (AL161506) contains similarity to Pfam family PF... 131 1e-027 gb|AAC60519.1| (S75260) pol [Drosophila buzzatii, BU-24, Peptide... 130 2e-027 gb|AAD19756.1| (AC006413) putative Ty3-gypsy-like retroelement p... 129 3e-027 gb|AAF08289.1|AF190123_3 (AF190123) polyprotein [tobacco vein-cl... 125 4e-026 gb|AAF74287.1|AF261775_1 (AF261775) ORFX [Lycopersicon pennellii] 123 2e-025 gb|AAF74286.1|AF261774_1 (AF261774) ORFX [Lycopersicon esculentum] 123 2e-025 emb|CAA73043.1| (Y12433) polyprotein; reverse transcriptase, RNa... 122 4e-025 emb|CAA73301.1| (Y12762) hypothetical protein [Zea mays] 121 8e-025 gb|AAD37350.1|AF142436_1 (AF142436) reverse transcriptase [Candi... 121 8e-025 emb|CAB53446.1| (AJ243732) polymerase polyprotein [Bitis arietans] 120 2e-024 dbj|BAA95881.1| (AP002071) Similar to Lycopersicon esculentum ha... 119 3e-024 gb|AAD11616.1| (AF049112) prpol [Zea mays] 119 4e-024 dbj|BAB02143.1| (AP000411) retroelement pol polyprotein-like [Ar... 118 7e-024 dbj|BAA92417.1| (AP001366) Similar to Sorghum bicolor Gypsy-Ty3 ... 118 7e-024 gb|AAC31805.1| (AF053745) pol polyprotein [Mus dunni endogenous ... 116 2e-023 emb|CAB53448.1| (AJ243730) polymerase polyprotein [Boulengerula ... 114 1e-022 gb|AAC02594.1| (AF045643) contains similarity to the retroviral ... 113 3e-022 emb|CAB38566.1| (X51929) polyprotein [Felis silvestris] 111 9e-022 gb|AAF15098.1| (AF151794) pol protein [Phascolarctos cinereus] 110 2e-021 gb|AAF71196.1| (AF182203) pol protein integrase region [Pinus br... 109 3e-021 gb|AAA46810.1| (M26927) pol polyprotein [Gibbon ape leukemia virus] 109 3e-021 emb|CAB38458.1| (AL035631) BACN32G13.a [Drosophila melanogaster] 109 5e-021 gb|AAF19542.1|AC007190_10 (AC007190) F23N19.18 [Arabidopsis thal... 61 6e-021 gb|AAF71195.1| (AF182201) pol protein integrase region [Pinus br... 107 1e-020 dbj|BAA89659.1| (D10032) gag-pol precursor polyprotein [Baboon e... 107 2e-020 gb|AAD55051.1| (AF169256) putative gag-pol polyprotein [Murine l... 107 2e-020 gb|AAC98548.1| (AF019230) pol polypeptide [Murine leukemia virus] 106 3e-020 gb|AAB06450.1| (U63133) Gag-Pol polyprotein [Mus musculus] 105 5e-020 gb|AAC46707.1| (U23171) Contains similarity to Pfam domain: PF00... 105 5e-020 gb|AAB64160.1| (AF010170) Pol [synthetic construct] 105 7e-020 gb|AAB03091.1| (J01998) gag-pol polyprotein (tag amber codon at ... 105 7e-020 gb|AAC82568.1| (AF033811) Pr180 [Moloney murine leukemia virus] 105 7e-020 gb|AAD34536.1| (AF136491) polymerase [Murine leukemia virus] 104 9e-020 gb|AAC80264.1| (U60065) pol polyprotein [Gibbon ape leukemia virus] 104 1e-019 gb|AAF71197.1| (AF182205) pol protein integrase region [Pinus br... 102 4e-019 gb|AAF71149.1| (AF152539) pol protein integrase region [Abies alba] 102 5e-019 gb|AAA28946.1| (M37656) ORF2 [Drosophila ananassae] 102 5e-019 emb|CAB53560.1| (AJ006557) reverse transcriptase [Anopheles fune... 101 8e-019 gb|AAF71147.1| (AF152537) pol protein integrase region [Abies alba] 101 1e-018 emb|CAB81136.1| (AL161506) putative athila transposon protein [A... 101 1e-018 gb|AAC16764.1| (AF038600) pol protein [Sus scrofa] 100 2e-018 gb|AAA92679.1| (U13766) gag-pol polyprotein [Murine leukemia virus] 100 2e-018 gb|AAC47272.1| (U09586) integrase [Tribolium castaneum] 92 2e-018 gb|AAA79247.1| (M87550) reverse transcriptase [Murine leukemia v... 100 2e-018 gb|AAF71152.1| (AF152542) pol protein integrase region [Picea ab... 100 3e-018 emb|CAB65340.1| (AJ133817) viral polypeptide [porcine endogenous... 100 3e-018 emb|CAB53450.1| (AJ243731) polymerase polyprotein [Crocodylus ni... 99 5e-018 gb|AAB86912.1| (U94692) Pol [Rauscher murine leukemia virus] 99 5e-018 gb|AAF71145.1| (AF152535) pol protein integrase region [Abies alba] 99 7e-018 gb|AAA19978.1| (U04327) N-terminus uncertain [Simian foamy virus] 98 9e-018 dbj|BAA22064.1| (D88386) gag-pol polyprotein (precursor protein)... 98 9e-018 emb|CAA77477.1| (Z11128) RNA-dependent DNA polymerase [Friend mu... 98 9e-018 gb|AAA46477.1| (M93134) pol protein [Friend murine leukemia virus] 98 2e-017 gb|AAA93092.1| (M18247) gag-pol precursor polyprotein gPr80 [Fel... 97 2e-017 gb|AAF71151.1| (AF152541) pol protein integrase region [Picea ab... 97 3e-017 gb|AAA47796.1| (M74895) pol polyprotein [Simian foamy virus type 3] 96 5e-017 gb|AAA46122.1| (M54978) pol protein [Human spumaretrovirus] 95 8e-017 gb|AAC31801.1| (AF052723) gag-pol precursor polyprotein gPr80 [F... 95 8e-017 gb|AAB48112.1| (U21247) pro-pol protein [Human spumaretrovirus] 95 8e-017 emb|CAA68999.1| (Y07724) pol [Human foamy virus] 95 8e-017 emb|CAA68997.1| (Y07723) pol [Human foamy virus] 95 8e-017 emb|CAA69003.1| (Y07725) pol [Human foamy virus] 95 8e-017 gb|AAD27551.1|AF111709_5 (AF111709) gag-pol protein [Oryza sativ... 95 1e-016 gb|AAD15534.1| (AC006217) putative retroelement pol polyprotein ... 94 2e-016 dbj|BAA32280.1| (AB016585) unnamed protein product [Tricholoma n... 94 2e-016 gb|AAB68770.1| (U94514) pol polyprotein [bovine syncytial virus] 93 3e-016 gb|AAF71153.1| (AF152543) pol protein integrase region [Picea ab... 93 4e-016 gb|AAC58531.1| (U85043) reverse transcriptase [feline syncytial ... 92 5e-016 gb|AAB38321.1| (U78765) FeSFV polymerase [feline syncytial virus] 92 5e-016 emb|CAA11581.1| (AJ223851) pol gene [Feline foamy virus] 91 2e-015 emb|CAA70075.1| (Y08851) pol [Feline foamy virus] 91 2e-015 gb|AAF71150.1| (AF152540) pol protein integrase region [Abies alba] 89 5e-015 gb|AAC54861.1| (U26458) gag-pol polyprotein [Snakehead retrovirus] 87 2e-014 gb|AAF64414.1|AF201902_2 (AF201902) Pol [equine foamy virus] 86 4e-014 gb|AAF71146.1| (AF152536) pol protein integrase region [Abies alba] 85 7e-014 gb|AAF71148.1| (AF152538) pol protein integrase region [Abies alba] 83 3e-013 gb|AAD30054.1| (AF133052) pol polyprotein [walleye epidermal hyp... 82 8e-013 gb|AAC59311.1| (AF014793) pol polyprotein [walleye epidermal hyp... 82 8e-013 dbj|BAA92690.1| (AB032718) pol polyprotein [Bombyx mori] 81 1e-012 gb|AAD51320.1| (AF169187) polymerase [Triticum aestivum] 80 2e-012 dbj|BAA85207.1| (AP000570) ESTs C26347(C12145),AU078074(C12145) ... 80 2e-012 dbj|BAA84632.1| (AP000492) ESTs C26347(C12145),AU078074(C12145) ... 80 2e-012 gb|AAD22157.1|AF061282_10 (AF061282) hypothetical protein [Sorgh... 80 4e-012 gb|AAG12508.1|AC074283_19 (AC074283) Similar to part of a polypr... 77 2e-011 gb|AAD03367.1| (AC005957) putative retroelement pol polyprotein ... 76 4e-011 gb|AAD25683.2|AC006194_1 (AC006194) putative retroelement pol po... 75 1e-010 dbj|BAA99536.1| (AP002484) putative gypsy-type retrotransposon R... 73 3e-010 gb|AAD27548.1|AF111709_2 (AF111709) polyprotein [Oryza sativa su... 73 3e-010 gb|AAD02554.1| (AF049928) PGPS/D12 [Petunia x hybrida] 59 5e-010 gb|AAD23707.1|AC006918_6 (AC006918) putative retroelement pol po... 71 1e-009 gb|AAC82611.1| (AF033822) Pr gag-pro-pol [Walleye dermal sarcoma... 70 3e-009 emb|CAA67548.1| (X99085) integrase [Ascobolus immersus] 67 3e-008 gb|AAF69810.1| (AF180926) pol protein [Picea abies] 66 4e-008 gb|AAD14015.1|S68526_1 (S68526) Unknown [Drosophila melanogaster] 66 4e-008 emb|CAA41394.1| (X58484) pol [Simian foamy virus] 66 4e-008 dbj|BAB00646.1| (AP002804) EST C72786(E2258) corresponds to a re... 64 2e-007 dbj|BAA87844.1| (AP000815) EST C72786(E2258) corresponds to a re... 64 2e-007 gb|AAF69715.1|AC016041_20 (AC016041) F27J15.18 [Arabidopsis thal... 47 8e-007 dbj|BAA90963.1| (AK000132) unnamed protein product [Homo sapiens] 61 2e-006 gb|AAF79235.1|AC006917_20 (AC006917) F10B6.27 [Arabidopsis thali... 61 2e-006 gb|AAC27145.1| (AC004512) Contains similarity to gb|L46397 MADS ... 60 3e-006 gb|AAF81311.1|AC061957_7 (AC061957) Contains strong similarity (... 59 6e-006 emb|CAA73304.1| (Y12776) MADS-box protein [Arabidopsis thaliana] 59 6e-006 gb|AAD49981.1|AC008075_14 (AC008075) Simialr to gb|AF049928 PGP2... 59 6e-006 dbj|BAA99310.1| (AP000397) orf764 [Beta vulgaris var. altissima] 59 8e-006 gb|AAD23028.1|AC006585_23 (AC006585) putative MADS-box protein [... 58 1e-005 gb|AAD20431.1| (AC006446) putative retroelement pol polyprotein ... 58 1e-005 gb|AAG12954.1|AC036106_6 (AC036106) SRF-type transcription facto... 57 2e-005 dbj|BAA33568.1| (AB012885) MEF2C [Cyprinus carpio] 57 3e-005 emb|CAB61037.1| (Z79758) Similarity to C.elegans MEF-2 protein (... 57 3e-005 gb|AAA79337.1| (U36199) CeMEF-2 [Caenorhabditis elegans] 57 3e-005 gb|AAA79336.1| (U36198) CeMef-2 [Caenorhabditis elegans] 57 3e-005 dbj|BAB08227.1| (AB011483) MADS-box protein-like [Arabidopsis th... 57 3e-005 gb|AAC05226.1| (U66569) myocyte enhancer factor 2C MEF2C [Danio ... 57 3e-005 gb|AAF28894.1|AF124814_1 (AF124814) APETALA3 [Brassica napus] 55 9e-005 gb|AAB08879.1| (U67455) homeotic protein boi2AP3 [Brassica olera... 55 9e-005 gb|AAF06817.1|U19493_1 (U19493) MADS domain transcription factor... 55 9e-005 gb|AAA20463.1| (U07422) myocyte-specific enhancer factor 2 [Dros... 55 9e-005 gb|AAA19957.1| (U03292) MADS box gene [Drosophila melanogaster] 55 9e-005 gb|AAB17196.1| (U49020) myocyte-specific enhancer factor 2A, C4 ... 55 9e-005 gb|AAA59578.1| (L08895) enhancer binding factor 2C [Homo sapiens] 55 9e-005 gb|AAD51903.1| (AF115814) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51902.1| (AF115813) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51901.1| (AF115812) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51900.1| (AF115811) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51899.1| (AF115810) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51898.1| (AF115809) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51895.1| (AF115806) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51894.1| (AF115805) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51893.1| (AF115804) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51892.1| (AF115803) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51891.1| (AF115802) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51890.1| (AF115801) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51889.1| (AF115800) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51888.1| (AF115799) floral homeotic protein AP3 [Arabidops... 55 9e-005 gb|AAD51887.1| (AF115798) floral homeotic protein AP3 [Arabidops... 55 9e-005 emb|CAB81799.1| (AL132971) floral homeotic protein APETALA3 (AP3... 55 9e-005 gb|AAB08877.1| (U67453) homeotic protein boi1AP3 [Brassica olera... 55 9e-005 dbj|BAA04665.1| (D21125) APETALA3 [Arabidopsis thaliana] 55 9e-005 gb|AAA32740.1| (M86357) APETELA3 [Arabidopsis thaliana] 55 9e-005 gb|AAF58872.1| (AE003831) Mef2 gene product [Drosophila melanoga... 55 9e-005 emb|CAA58508.1| (X83527) myocyte enhancer-binding factor 2 [Dros... 55 9e-005 emb|CAA48517.1| (X68505) myocyte-specific enhancer factor 2 (MEF... 55 9e-005 emb|CAA76175.1| (Y16312) serum response factor-related protein [... 55 9e-005 gb|AAB17195.1| (U49020) myocyte-specific enhancer factor 2A, C9 ... 55 9e-005 dbj|BAA92543.1| (AB037726) KIAA1305 protein [Homo sapiens] 55 9e-005 gb|AAC05225.1| (U66568) myocyte enhancer factor 2A MEF2A [Danio ... 55 9e-005 emb|CAB43712.1| (AJ010072) MEF2A protein [Gallus gallus] 55 9e-005 gb|AAA74030.1| (U30823) myocyte enhancer factor-2A [Mus musculus... 55 9e-005 dbj|BAA33567.1| (AB012884) MEF2A [Cyprinus carpio] 55 9e-005 gb|AAB25838.1| (S57212) myocyte enhancer-binding factor 2, MEF2 ... 55 9e-005 emb|CAA44979.1| (X63381) serum response factor-related protein [... 55 9e-005 gb|AAB52709.1| (L37526) MADS box protein [Oryza sativa] 55 1e-004 dbj|BAA08722.1| (D49970) As-MEF2 [Halocynthia roretzi] 55 1e-004 gb|AAD51896.1| (AF115807) floral homeotic protein AP3 [Arabidops... 54 2e-004 gb|AAC15419.1| (AF042068) MADS-box protein NMH 7 [Medicago sativa] 54 2e-004 gb|AAB86982.1| (AC002126) XMEF2 [Homo sapiens] 54 2e-004 emb|CAA48515.1| (X68502) myocyte-specific enhancer factor 2 (XM... 54 2e-004 emb|CAA44978.1| (X63380) serum response factor-related protein [... 54 2e-004 gb|AAD51897.1| (AF115808) floral homeotic protein AP3 [Arabidops... 54 2e-004 emb|CAA48725.1| (X68831) globosa [Antirrhinum majus] 53 3e-004 gb|AAF79233.1|AC006917_18 (AC006917) F10B6.29 [Arabidopsis thali... 53 3e-004 emb|CAA71739.1| (Y10750) DEFH125 protein [Antirrhinum majus] 53 3e-004 gb|AAC78283.1| (AF029976) MADS box protein [Eucalyptus grandis] 53 4e-004 gb|AAA47793.1| (M33561) polymerase [Simian foamy virus] 53 4e-004 gb|AAF27155.1|AC016529_18 (AC016529) putative SRF-type transcrip... 53 5e-004 emb|CAA79530.1| (Z19123) SRF-related protein [Xenopus laevis] 53 5e-004 gb|AAD25638.1|AC007210_3 (AC007210) putative MADS-box protein AN... 53 5e-004 emb|CAB09793.1| (Z97057) ANR1 , MADS-box protein [Arabidopsis th... 53 5e-004 gb|AAF25590.1| (AF143380) apetala3 [Arabidopsis lyrata] 53 5e-004 gb|AAB29974.1| (S68895) myocyte-specific enhancer-binding factor... 52 6e-004 gb|AAG09919.1|AF112149_1 (AF112149) MADS box protein 2 [Zea mays] 52 6e-004 emb|CAA06531.1| (AJ005425) MEF2D protein [Rattus norvegicus] 52 6e-004 gb|AAC05227.1| (U66570) myocyte enhancer factor 2D MEF2D [Danio ... 52 6e-004 gb|AAA93194.1| (L16794) transcription factor [Homo sapiens] 52 6e-004 emb|CAA05282.1| (AJ002238) qMEF2D protein [Coturnix japonica] 52 6e-004 emb|CAA79531.1| (Z19124) SRF-related protein [Xenopus laevis] 52 6e-004 gb|AAB29973.1| (S68893) myocyte-specific enhancer-binding factor... 52 6e-004 gb|AAC42570.1| (AF052855) APETALA3 homolog PnPI-1 [Papaver nudic... 52 6e-004 dbj|BAA81880.1| (AB003322) MADS box-like protein [Oryza sativa] 52 8e-004 gb|AAC05723.1| (L37527) MADS box protein [Oryza sativa] 52 8e-004 gb|AAA33731.1| (M91190) transcription factor [Petunia x hybrida] 52 8e-004 emb|CAA02244.1| (A36587) unnamed protein product [Petunia x hybr... 52 8e-004 dbj|BAA25245.1| (D89670) transcription factor [Ceratopteris rich... 52 8e-004 dbj|BAA81881.1| (AB003323) MADS box-like protein [Oryza sativa] 52 8e-004 emb|CAA48142.1| (X67959) NTGLOBOSA [Nicotiana tabacum] 52 8e-004 gb|AAD22493.2|AF134114_1 (AF134114) PISTILLATA protein homolog H... 52 8e-004 gb|AAA80304.1| (U28482) MADS box regulatory protein [Rumex acetosa] 52 8e-004 emb|CAA61484.1| (X89113) MADS box regulatory protein [Rumex acet... 52 8e-004 gb|AAF59838.1|AF181479_1 (AF181479) MADS-box DNA binding protein... 52 8e-004 emb|CAB80459.1| (AL161592) MADS-box protein AGL17-like protein [... 52 0.001 emb|CAB37534.1| (AL035538) MADS-box protein AGL17-like protein [... 52 0.001 gb|AAD02250.1| (AF043255) MADS box protein 26 [Cucumis sativus] 52 0.001 gb|AAD19872.1| (AF077760) MADS box protein [Oryza sativa] 52 0.001 dbj|BAA33459.1| (AB007506) MADS box transcription factor [Tritic... 52 0.001 gb|AAB48660.1| (L41727) MADS-box protein [Medicago sativa] 52 0.001 dbj|BAA25247.1| (D89672) transcription factor [Ceratopteris rich... 52 0.001 gb|AAD22494.2|AF134115_1 (AF134115) PISTILLATA protein homolog H... 52 0.001 gb|AAA80305.1| (U28483) MADS box regulatory protein [Rumex acetosa] 52 0.001 emb|CAA61481.1| (X89108) MADS box regulatory protein [Rumex acet... 52 0.001 gb|AAG09811.1| (AF275345) MADS-box transcription factor jointles... 52 0.001 dbj|BAB10600.1| (AB011484) floral homeotic protein AGL15 [Arabid... 52 0.001 gb|AAA65653.1| (U22528) AGL15 [Arabidopsis thaliana] 52 0.001 gb|AAA65654.1| (U22665) AGL15 [Brassica napus] 52 0.001 gb|AAF45363.1| (AE003176) CG12555 gene product [Drosophila melan... 52 0.001 dbj|BAA24540.1| (D87831) myocyte enhancer factor 2B type B-2 [Mu... 51 0.001 dbj|BAA24544.1| (D87835) myocyte enhancer factor 2B type B-2 [Mu... 51 0.001 gb|AAG09138.1|AF150934_1 (AF150934) MADS-domain protein PPM2 [Ph... 51 0.001 gb|AAG09137.1|AF150933_1 (AF150933) MADS-domain protein PPM2 [Ph... 51 0.001 dbj|BAA24545.1| (D87836) myocyte enhancer factor 2B type B-4 [Mu... 51 0.001 gb|AAC49083.1| (U20185) MADS-box protein AGL15 [Arabidopsis thal... 51 0.001 emb|CAB83155.1| (AL162691) putative protein [Arabidopsis thaliana] 51 0.001 dbj|BAA24539.1| (D87831) myocyte enhancer factor 2B type B-1 [Mu... 51 0.001 dbj|BAA08850.1| (D50311) MEF2B [Mus musculus] 51 0.001 dbj|BAA24542.1| (D87833) myocyte enhancer factor 2B type B-1 [Mu... 51 0.001 dbj|BAA24541.1| (D87831) myocyte enhancer factor 2B type B-3 [Mu... 51 0.001 dbj|BAA24543.1| (D87834) myocyte enhancer factor 2B type B-3 [Mu... 51 0.001 emb|CAB16834.1| (Z99708) putative MADS-box protein [Arabidopsis ... 51 0.002 emb|CAB80325.1| (AL161589) putative MADS-box protein [Arabidopsi... 51 0.002 gb|AAD03486.1| (AF027376) MADS1 [Corylus avellana] 51 0.002 emb|CAB95649.1| (AJ252071) MADS box protein [Betula pendula] 51 0.002 gb|AAC26702.1| (AC004077) MADS-box protein (AGL29) [Arabidopsis ... 50 0.002 emb|CAA24515.1| (V01201) coding sequence of pol [Simian sarcoma ... 42 0.003 gb|AAA17033.1| (L23925) NAG1 [Nicotiana tabacum] 50 0.004 gb|AAD15533.1| (AC006217) putative retroelement pol polyprotein ... 50 0.004 gb|AAD21741.1| (AC006931) floral homeodomain transcription facto... 50 0.004 emb|CAA51417.1| (X72912) pMADS3 [Petunia x hybrida] 50 0.004 emb|CAA86585.1| (Z46612) agamous [Panax ginseng] 50 0.004 gb|AAA32735.1| (M55553) transcription factor [Arabidopsis thaliana] 50 0.004 emb|CAA56655.1| (X80488) SLM1 [Silene latifolia] 49 0.005 gb|AAF91905.1| (AY001564) pol protein [Human immunodeficiency vi... 49 0.005 gb|AAC06237.1| (AF052570) AGAMOUS homolog [Populus balsamifera s... 49 0.005 emb|CAA08801.1| (AJ009723) MADS-box protein, GAGA2 [Gerbera hybr... 49 0.005 gb|AAD51422.1|U78949_1 (U78949) MADS-box protein 3 [Malus x dome... 49 0.007 emb|CAB88295.1| (AL353032) shatterproof 1 (SHP1)/ agamous-like 1... 49 0.007 emb|CAA04323.1| (AJ000761) MADS-box protein [Malus domestica] 49 0.007 gb|AAA34197.1| (L26295) TAG1 [Lycopersicon esculentum] 49 0.007 gb|AAA32730.1| (M55550) transcription factor [Arabidopsis thaliana] 49 0.007 gb|AAC06238.1| (AF052571) AGAMOUS homolog [Populus balsamifera s... 49 0.007 gb|AAF18373.1|AF158540_1 (AF158540) MADS-box transcription facto... 49 0.007 gb|AAF18372.1|AF158539_1 (AF158539) MADS-box transcription facto... 49 0.007 emb|CAB42988.1| (AJ239057) farinelli protein [Antirrhinum majus] 48 0.009 gb|AAD00025.1| (U43372) AGAMOUS protein [Rosa hybrid cultivar] 48 0.012 dbj|BAA90744.1| (AB025644) MADS-box protein [Rosa rugosa] 48 0.012 gb|AAD45814.1|AF168468_1 (AF168468) agamous protein [Fragaria x ... 48 0.012 dbj|BAA90745.1| (AB025645) MADS-box protein [Rosa rugosa] 48 0.012 dbj|BAA90743.1| (AB025643) MADS-box protein [Rosa rugosa] 48 0.012 gb|AAG23159.1| (AF257083) polyprotein [Heterodera glycines] 48 0.012 dbj|BAA90746.1| (AB025646) MADS-box protein [Rosa rugosa] 48 0.012 gb|AAA66622.1| (M32803) reverse transcriptase [Moloney murine le... 48 0.016 emb|CAA77892.1| (Z11866) env homologue [Cladosporium fulvum] 47 0.021 gb|AAF79890.1|AC026479_2 (AC026479) Contains similarity to MADS-... 47 0.021 emb|CAB87238.1| (AL138645) putative protein [Arabidopsis thaliana] 47 0.027 gb|AAD32834.1|AC007659_16 (AC007659) unknown protein [Arabidopsi... 43 0.032 gb|AAF18376.1|AF158543_1 (AF158543) MADS-box transcription facto... 46 0.047 gb|AAF12700.1| (AF034094) Apetala 1 protein [Populus tremuloides] 46 0.047 gb|AAC49816.1| (U78891) MADS box protein [Oryza sativa] 46 0.047 gb|AAF18377.1|AF158544_1 (AF158544) MADS-box transcription facto... 46 0.047 gb|AAC24492.1| (U91415) CMADS1 [Ceratopteris richardii] 46 0.062 emb|CAB97352.1| (AJ249144) MADS-box protein 5 [Hordeum vulgare] 45 0.081 gb|AAB68210.1| (U43281) Rlm1p,Lpg19p [Saccharomyces cerevisiae] 45 0.081 dbj|BAA09658.1| (D63340) Rlm1 [Saccharomyces cerevisiae] 45 0.081 dbj|BAA96556.1| (AP002480) Similar to Arabidopsis thaliana chrom... 45 0.11 dbj|BAA95850.1| (AP002070) Similar to Arabidopsis thaliana chrom... 45 0.11 gb|AAD21249.1| (AF116528) MADS box protein FLOWERING LOCUS F [Ar... 45 0.11 gb|AAD21248.1| (AF116527) MADS box protein FLOWERING LOCUS F [Ar... 45 0.11 emb|CAB92055.1| (AL356332) MADS box protein FLOWERING LOCUS F (F... 45 0.11 emb|CAB86480.1| (AL138643) putative protein [Arabidopsis thaliana] 44 0.18 gb|AAA99197.1| (K02537) pol polyprotein [Reticuloendotheliosis v... 44 0.24 emb|CAA25685.1| (X01455) C end of pol protein (reverse transcrip... 44 0.24 gb|AAF91803.1| (AY001246) pol protein [Human immunodeficiency vi... 44 0.24 gb|AAB60287.1| (U02073) unknown [Saccharomyces cerevisiae] 43 0.41 emb|CAA85143.1| (Z36051) ORF YBR182c [Saccharomyces cerevisiae] 43 0.41 gb|AAC00628.1| (AC002291) Similar to 'MADS box' transcription f... 43 0.41 gb|AAC58240.1| (AF006065) protease/polymerase [Fowlpox virus] 43 0.54 dbj|BAB10332.1| (AB026633) MADS box transcription factors-like p... 43 0.54 gb|AAD25049.1|AF117340_1 (AF117340) MAP kinase kinase kinase 1 [... 42 0.92 gb|AAG18609.1|AC073433_7 (AC073433) hypothetical protein; 60766-... 41 1.6 emb|CAA58276.1| (X83297) integrase [Simian foamy virus] 41 1.6 dbj|BAA97510.1| (AB026633) MADS box transcription factor-like [A... 41 1.6 gb|AAC14519.1| (AC004484) MADS-box protein (AGL33) [Arabidopsis ... 41 2.1 dbj|BAB10762.1| (AB023033) contains similarity to MADS-box prote... 41 2.1 gb|AAC28083.1| (AF049086) integrase [Simian foamy virus] 41 2.1 gb|AAD22129.1|AC006224_11 (AC006224) putative amine oxidase [Ara... 40 2.7 emb|CAB85570.1| (AL162875) MADS-box protein-like [Arabidopsis th... 40 3.5 emb|CAB98166.1| (AJ293574) putative corticosteroid binding prote... 40 3.5 emb|CAB86933.1| (AL163527) putative protein [Arabidopsis thaliana] 40 3.5 gb|AAA91270.1| (M32690) gag polyprotein [Bovine immunodeficiency... 39 4.6 gb|AAF99799.1|AC012463_16 (AC012463) T2E6.17 [Arabidopsis thaliana] 39 4.6 dbj|BAA97511.1| (AB026633) MADS box transcription factor-like [A... 39 4.6 emb|CAB10408.1| (Z97340) hypothetical protein [Arabidopsis thali... 39 6.1 emb|CAB78673.1| (AL161543) hypothetical protein [Arabidopsis tha... 39 6.1 gb|AAF26803.1|AC016829_27 (AC016829) putative SRF-type transcrip... 39 6.1 gb|AAF05803.1|AF193903_26 (AF193903) ribosomal protein S4 [Cafet... 39 8.0 dbj|BAB11644.1| (AB013395) MADS box transcription factor-like pr... 39 8.0 dbj|BAA25527.1| (AB011173) KIAA0601 protein [Homo sapiens] 39 8.0 emb|CAB06566.1| (Z84724) hypothetical protein Rv0426c [Mycobacte... 39 8.0 dbj|BAB09236.1| (AB009050) gene_id:MDF20.13~unknown protein [Ara... 39 8.0 emb|CAB72299.1| (AL031428) dJ184J9.1 (KIAA0601 protein) [Homo sa... 39 8.0 >gb|AAD27547.1|AF111709_1 (AF111709) polyprotein [Oryza sativa subsp. indica] Length = 1521 Score = 589 bits (1503), Expect(4) = 0.0 Identities = 294/525 (56%), Positives = 383/525 (72%), Gaps = 9/525 (1%) Frame = -2 Query: 51820 VHDINAEAPT---------LQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIF 51668 ++ I AE P L+ + +V E+P+VF +IEF ID+ T PI+ Sbjct: 527 LNQIEAEIPVDTMEKNLRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIY 586 Query: 51667 IPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKV 51488 PYRMA EL E+K+Q+ + L+KG+IRPSTSPWGAPV+FV KKD + +M ++Y+ LN+V Sbjct: 587 KRPYRMAANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEV 646 Query: 51487 TVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVL 51308 T+KN+YPLPRIDDLFDQL+GAK FSKIDLRS YH++R+RE DIPKTAF TRYG Y+ V+ Sbjct: 647 TIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVM 706 Query: 51307 SFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKL 51128 SFG+TNA A FM+LMN+VF FLD FV+VF+DDIL+YS+SEEEH HLR VL L+ +L Sbjct: 707 SFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQL 766 Query: 51127 YAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRR 50948 YA FSKC+FWLT + FLGH+I A G+ VD +E+V WT P T +++RSFL LA YYRR Sbjct: 767 YAKFSKCDFWLTEVKFLGHVITAQGVAVDPSNVESVTKWTPPKTVSQIRSFLGLAGYYRR 826 Query: 50947 FVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDT 50768 F+E F+ I+ P+ +L +K KF WT C++SF LK KL AP L LP+ + +YCD Sbjct: 827 FIENFSRIARPMTQLLKKDEKFKWTTECDKSFEELKKKLVSAPVLILPDPTKDFQVYCDA 886 Query: 50767 SGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYT 50588 S GLGCVLMQ G+V+AYASRQLR HE NYPTHDL+L VVHALKIWRHYL G ++YT Sbjct: 887 SRHGLGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEVYT 946 Query: 50587 DHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPE 50408 DHKSL+YIF Q +L LRQRRWLEL+KDYD+ I YH GKANVV DALSRK+ + V+ Sbjct: 947 DHKSLKYIFTQPDLNLRQRRWLELIKDYDMSIHYHPGKANVVADALSRKNYCTALCVEGM 1006 Query: 50407 MREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQYKDPILAQYR 50246 E+ ++ + L ++G+ E V+ E A+ +++D+V+ Q DP +A+ + Sbjct: 1007 CEELRQEFEHL-NVGIV----EHGFVAALE-ARPTLVDQVRAAQVNDPEIAELK 1054 Score = 339 bits (861), Expect(4) = 0.0 Identities = 154/273 (56%), Positives = 204/273 (74%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ ++ E H YSI+PGSTKMY DL+ +WW M+++IAEFVA C CQ VK EHQ+ Sbjct: 1087 LKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRP 1146 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 GLLQ ++IP WKWE I MDFITGLPRT DSIWV++DRLTK AHF+PV+TTY+ + Sbjct: 1147 AGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAHFIPVQTTYTGKRL 1206 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 LY+ I+ LHGVP I+SDRG+QFT+ FW+ Q+ +GT++N ST +HPQTDG++ER Sbjct: 1207 AELYLARIMCLHGVPRKIVSDRGSQFTSKFWQKLQEEMGTRLNFSTAYHPQTDGQTERVN 1266 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVG 49432 Q LEDMLRA +DF G+WD LP EF+YNN Y +S+QMAP++ALYGRKCR+P+ W G Sbjct: 1267 QILEDMLRACALDFGGAWDKSLPYAEFSYNNSYQASLQMAPFKALYGRKCRTPLFWDQTG 1326 Query: 49431 ETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 E +L G +++ + +KV++I+ERL +QSR KS Sbjct: 1327 ERQLFGTEVLAEAEEKVRIIRERLRIAQSRQKS 1359 Score = 310 bits (787), Expect(4) = e-146 Identities = 179/441 (40%), Positives = 267/441 (59%), Gaps = 3/441 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEK--EELAKDVHRLVR 9949 NL+QRRWLEL KDYDMSI YHPGKANVV +L R + CT++ E EEL ++ L Sbjct: 961 NLRQRRWLELIKDYDMSIHYHPGKANVVADALSRKNY-CTALCVEGMCEELRQEFEHL-N 1018 Query: 9950 LGVRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL 10129 +G+ E G V A +LV V+ DP LK+N++ + F + G + Sbjct: 1019 VGI-----VEHGFVAALEARPTLVDQVRAAQVNDPEIAELKKNMRVGKARDFLEDEHGTI 1073 Query: 10130 KYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMF 10309 ERLCVP+ +DLI+ ++H T +S GS KMY+ L+E + ++++I +FVA+ Sbjct: 1074 WMGERLCVPDDKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSMRREIAEFVALC 1133 Query: 10310 SNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSH 10489 Q+VK EHQR GL + +++P WKWE I MDFI + H+SI+V+VDRLTK +H Sbjct: 1134 DVCQRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAH 1193 Query: 10490 FLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLL 10669 F+ V +T + A+LY+ ++ LHG I+S+R + FT++ W+ Q+ G++LN Sbjct: 1194 FIPVQTTYTGKRLAELYLARIMCLHGVPRKIVSDRGSQFTSKFWQKLQEEMGTRLNFSTA 1253 Query: 10670 FILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYG 10846 + + + + + + LE MLRAC +DF WD ++P E+SYNNSY +S+QMAP++ALYG Sbjct: 1254 YHPQTDGQTERVNQILEDMLRACALDFGGAWDKSLPYAEFSYNNSYQASLQMAPFKALYG 1313 Query: 10847 RRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVD 11026 R+ R + + GE L G +V+ + +K+++I+ER+ QS +K D RRR L E Sbjct: 1314 RKCRTPLFWDQTGERQLFGTEVLAEAEEKVRIIRERLRIAQSRQKSYADNRRRELTFEAG 1373 Query: 11027 DWVYLKV*P*RVF*GLLIRGNLFP 11098 D+VYL+V P R +G L P Sbjct: 1374 DYVYLRVTPLRGVHRFQTKGKLAP 1397 Score = 152 bits (379), Expect(4) = 0.0 Identities = 69/152 (45%), Positives = 106/152 (69%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 +S+ADNRR +L F+ GD+V+L+V+P++GV R KGKL+PR++GPY+I+ G+VAY+L+ Sbjct: 1358 KSYADNRRRELTFEAGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPYKILERRGEVAYQLE 1417 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LPS++ +H VFHVS L+KC+ P + + + E+ +Y EKP+ +LD RR R K Sbjct: 1418 LPSNMIGIHDVFHVSQLKKCLRVPEEQADSEHIDIQEDLTYVEKPVRILDTSERRTRNKV 1477 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 +V W +++ EE T E EDE+K +P+LF Sbjct: 1478 TRFCRVQWSHHSEEEATWEREDELKAAHPHLF 1509 Score = 118 bits (294), Expect(4) = e-146 Identities = 68/175 (38%), Positives = 95/175 (53%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA FM LM++VF FLD F YS ++E+H LR+VL+ L+ + KFSK Sbjct: 713 APAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSK 772 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 +F L V FLGH+I+ +G+ VD +ES + P I SFL LA YYRRF++ FS Sbjct: 773 CDFWLTEVKFLGHVITAQGVAVDPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFS 832 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 I+ P+T++ +F+ + C+ F EL K+ F VYC AS Sbjct: 833 RIARPMTQLLKKDEKFKWTTECDKSFEELKKKLVSAPVLILPDPTKDFQVYCDAS 887 Score = 85.8 bits (209), Expect(4) = e-146 Identities = 45/102 (44%), Positives = 58/102 (56%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 K +I + SPWGA V+F+ KK R+C+DY N VT K KYPL RI Sbjct: 610 KGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKV 669 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+LRSG H++++RE D+PKT F RYG Y V+ LT Sbjct: 670 FSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLT 711 Score = 83.9 bits (204), Expect = 2e-013 Identities = 83/319 (26%), Positives = 146/319 (45%), Gaps = 38/319 (11%) Frame = -1 Query: 1298 SDQGQTPPIFSAPAPQVPEVQHAASVAPRMDASL--EISTFPRLTTGPIM--TSDQHELF 1131 SD G PP P P+ P + + +M A++ ++ + +M QH+ F Sbjct: 28 SDSGNVPP----PLPENPTLAQVMAHQTQMMAAMMQQMQQQHQQMHQRMMQHVEQQHQQF 83 Query: 1130 S---------KFLKLNPPVFKVAQSE-DAYDFLVDCHELLHKMGIVERFGVEFVTYQFKG 981 +FL++ PP F + +A D+L + L+ + ++ V F T+Q +G Sbjct: 84 GPPPPQSKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQG 143 Query: 980 NAKMWWRSHVGCQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFFSLEQGRMSLTAYE 801 A WW +H+ +P +TWA F F + +P + +++ EF +L QG ++T Y Sbjct: 144 PASAWWDNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYL 202 Query: 800 AKFRASSRYATQLCFSPKERISRFVKGLR*ELRISALQVAATTKSFQEVVDFVIEVEGVK 621 +F +RYA + + E+ +F+ GL EL + ++ F+ +VD + ++ Sbjct: 203 HEFNRLARYAPEDVRTDAEKQEKFMAGLDDEL--TNQLISGDYADFERLVD-----KAIR 255 Query: 620 QDDFTMASTSNRFHKGGEFNXXXXXXXXXXXYPVRPIQFSLQAVAGGPP*TSQHFSKFGG 441 Q+D + +R K +F P + + V P S +F + Sbjct: 256 QED--QRNKMDRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPFNSSNFHQGSS 313 Query: 440 YLQISSFSQ-------RPM-----------------IKSRECYGCGKTGHIKRYCPK 342 Q SQ RP +K C+ CG+ GH CPK Sbjct: 314 GSQNHHGSQPNRGAAPRPPMAPAQSGQPAQAKKETGVKPGSCFNCGELGHFADKCPK 370 Score = 74.9 bits (181), Expect(4) = e-146 Identities = 35/65 (53%), Positives = 50/65 (76%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L G+V+ Y S+ L +E NYPTHD+ELA++V +LKIW H+L G R +++TD+KS Sbjct: 891 LGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKS 950 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 951 LKYIFT 956 Score = 74.1 bits (179), Expect(2) = 5e-016 Identities = 35/78 (44%), Positives = 50/78 (63%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPS 11232 ++GV RF KGKL PRF+G YKI +R G Y+LELP + +H VFH+S L K L P Sbjct: 1383 LRGVHRFQTKGKLAPRFVGPYKILERRGEVAYQLELPSNMIGIHDVFHVSQLKKCLRVPE 1442 Query: 11233 LIVPTKIVGIKDNLSYEE 11286 ++ + I+++L+Y E Sbjct: 1443 EQADSEHIDIQEDLTYVE 1460 Score = 59.3 bits (141), Expect = 5e-006 Identities = 76/330 (23%), Positives = 137/330 (41%), Gaps = 13/330 (3%) Frame = -1 Query: 53495 PVPE-PSAPKSGAEDRAMTDAV*LLTRLVAVHVHSHGLGVDHADRSDNL--------RAR 53343 P+PE P+ + A M A ++ ++ H H + H ++ + Sbjct: 36 PLPENPTLAQVMAHQTQMMAA--MMQQMQQQHQQMHQRMMQHVEQQHQQFGPPPPQSKLP 93 Query: 53342 DFLSCNPTEFFGSRPQDDPQKFICQMQRTLRISKASETESVELATYRLRDVDINWYESWE 53163 +FL P F + + ++ +++ L + + ++ E V AT++L+ W+++ Sbjct: 94 EFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHM 153 Query: 53162 LSRGEGAPPMIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYA 52983 +R G + W EF +F+ + + + F L + R+V EY EF+ L RYA Sbjct: 154 ATRPPGTE-VTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYA 212 Query: 52982 PTIVADMADRVHRYVMGLDRYLNYSCMA---VTLQPSMDIARVQAYAQGVEDRHRGR*PD 52812 P V A++ +++ GLD L ++ + +D A Q + DR R Sbjct: 213 PEDVRTDAEKQEKFMAGLDDELTNQLISGDYADFERLVDKAIRQEDQRNKMDRKRKAAQF 272 Query: 52811 RDYNRGHHKRARSGGYCNEF*GGKSQQHVRFXXXXXXXXXPRSMARGFDRTRYTEAGQSS 52632 R +G H+R R + GG + VR R F+ + + + S Sbjct: 273 R-APQGSHQRPR---FTPGQQGGPTTMIVR-------------QHRPFNSSNFHQGSSGS 315 Query: 52631 R-VSGSNLGRGLSQ*RPPLPRCSRCGRSHPGECRWAIGACFSC 52506 + GS RG + P P S E G+CF+C Sbjct: 316 QNHHGSQPNRGAAPRPPMAPAQSGQPAQAKKETGVKPGSCFNC 358 Score = 51.2 bits (120), Expect(4) = 0.0 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 3/137 (2%) Frame = -3 Query: 52299 SRQDQEASPNVITGILLLFS*SVYALIDPGSTL*FLSAFIASRIGI-ESELIEPFEVATP 52123 S ++ +A+P V+ G + S L D G+T F+S G+ + EL P V TP Sbjct: 387 SAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELRTPMRVHTP 446 Query: 52122 LGDSVIATRVYKNCSVVIYSRRT--IADLIELTIIEFDIIMGMDWLAACYANVDYRGKIV 51949 G+S +T V + SV+I +R+ +A+LI L + D+I+GMDWL +D + V Sbjct: 447 -GNS--STSVSFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTV 503 Query: 51948 RFQFLGEPIIEWKGSTISRK 51889 + KG T+ K Sbjct: 504 -------TLTNEKGETVVHK 516 Score = 50.8 bits (119), Expect = 0.002 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 1/137 (0%) Frame = +1 Query: 6901 SRVSEFLRMNTSSFTGTNTM*NLKNIVEEFKRIFEVIHVVDYERVELV*HELKCVAITWL 7080 S++ EFLR+ +F+ T + + ++ ++ D E+V H+L+ A W Sbjct: 90 SKLPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWW 149 Query: 7081 DQWKEGRANNATHPWWACFEKAFFERFFPRELNEEKVREFLTFKLDCINVHEYGLKFPKL 7260 D R T WA F ++F + P + +K REF V EY +F +L Sbjct: 150 DNHMATRP-PGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRL 208 Query: 7261 SRYAP*MV-NDMERRVSF 7311 +RYAP V D E++ F Sbjct: 209 ARYAPEDVRTDAEKQEKF 226 Score = 47.3 bits (110), Expect(2) = 0.002 Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 13/254 (5%) Frame = +1 Query: 8053 NCQEQENCKYVFTSMIKVFTFDVYALLNPGANLSYLIPYVANHFEIVPEKLCEPFYISTP 8232 + +E + V V + L + GA S++ + + E+L P + TP Sbjct: 387 SAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELRTPMRVHTP 446 Query: 8233 VGESILAERVYHDCHVSTNHNMTMADLVELYIVEFDVILGMD*LHALHALYVSIDCIK*V 8412 G S + + + +A+L+ L + DVILGMD L + IDC Sbjct: 447 -GNSSTSVSFSPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGV---IDCANRT 502 Query: 8413 FKFQILNEPIIIVVQQCLRVLFYLIPYGEEVSPKLVYLSLSRANDLSVEVP--------- 8565 + NE VV + L VSPK + N + E+P Sbjct: 503 VT--LTNEKGETVVHKSL------------VSPK----QGASLNQIEAEIPVDTMEKNLR 544 Query: 8566 ---SLQLVCIVGK-FLDDLFGVPPDREIDFGIQNIPDTRPISIP*YIMAPXXXXXXXXXX 8733 + +VC + F +DL +PP REI+F I P T PI Y MA Sbjct: 545 KLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQV 604 Query: 8734 XDHVXXXXXXXXXXXXGSPRLVFKEEK 8814 + + G+P ++F E+K Sbjct: 605 DEQLQKGYIRPSTSPWGAP-VIFVEKK 630 Score = 39.1 bits (89), Expect = 6.1 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 5/75 (6%) Frame = +3 Query: 42468 VQDSLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKISSKTIHR----GRIL-K 42632 +++ LR A R K+ AD L F+ G+ V +++TP + +HR G++ + Sbjct: 1346 IRERLRIAQSRQKSYADNRRRELTFEAGDYVYLRVTP-------LRGVHRFQTKGKLAPR 1398 Query: 42633 *DGPFDVIERAGEVSCMLKL 42692 GP+ ++ER GEV+ L+L Sbjct: 1399 FVGPYKILERRGEVAYQLEL 1418 Score = 38.7 bits (88), Expect(2) = 5e-016 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFESIENS 11450 I D R+ R K +V W + EEAT+E E++++ + HLF S S Sbjct: 1465 ILDTSERRTRNKVTRFCRVQWSHHSEEEATWEREDELKAAHPHLFTSSSES 1515 Score = 22.7 bits (47), Expect(2) = 0.002 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = +3 Query: 7875 CFNFAQEGHFMRQHPKNKK 7931 CFN + GHF + PK ++ Sbjct: 355 CFNCGELGHFADKCPKPRR 373 >emb|CAA73042.1| (Y12432) polyprotein [Ananas comosus] Length = 871 Score = 611 bits (1558), Expect(4) = 0.0 Identities = 297/482 (61%), Positives = 371/482 (76%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 IEF ID++ T PI PYRMAPAEL+EL+ QL+DLL+KGFIRPS SPWGAPVLFV+KKD Sbjct: 5 IEFVIDLVPGTTPISKAPYRMAPAELRELRAQLQDLLDKGFIRPSVSPWGAPVLFVKKKD 64 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 GSL++ ++Y++LNKVT+KN+YPLPRIDDLFDQLQG+ +SKIDL+S YH+++++ D+ K Sbjct: 65 GSLRLCVDYRELNKVTIKNKYPLPRIDDLFDQLQGSCVYSKIDLQSGYHQLKIKPEDVSK 124 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 TAF TRYGHY+F V+ FG+TNA FMDLMNRVFKP+LD FV+VF+DDILVYSRS+ +H Sbjct: 125 TAFRTRYGHYEFAVMPFGLTNAPTAFMDLMNRVFKPYLDRFVVVFIDDILVYSRSDADHE 184 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 +HLR VL+VL+ ++LY KCEFWL +AFLGH+I GI VD +KIEA+K W R T+ Sbjct: 185 EHLRIVLQVLREKELYVKLKKCEFWLREVAFLGHLISGSGIAVDPKKIEAIKDWPRLTSV 244 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 TE+RSFL LA YYRRFVE+FA +S PL RLT K KF W +ACERSF LK +LT AP L Sbjct: 245 TEIRSFLGLAGYYRRFVERFAKLSTPLTRLTHKGVKFIWNDACERSFQELKQRLTTAPIL 304 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALK 50633 LP GYV+Y D S GLGCVLMQ KVIAYASRQL+++E NYPTHDL+L VV ALK Sbjct: 305 TLPVAGAGYVVYSDASLNGLGCVLMQDDKVIAYASRQLKEYEKNYPTHDLELAAVVFALK 364 Query: 50632 IWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDA 50453 +WRHYLYG ++YTDHKSL+Y+F QKEL LRQRRWLELLKDYD+ ILYH GKANVV DA Sbjct: 365 LWRHYLYGERCEVYTDHKSLKYLFTQKELNLRQRRWLELLKDYDLTILYHPGKANVVADA 424 Query: 50452 LSRKSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQY 50273 LSRKSM +L ++ ++RL L + ++ +++ V + +++D +K Q Sbjct: 425 LSRKSMENLAMHVVTQPRLIEQMKRL-ELEIVTPDTPMRLMTL--VVQPTLLDRIKEKQA 481 Query: 50272 KD 50267 D Sbjct: 482 SD 483 Score = 371 bits (942), Expect(4) = 0.0 Identities = 165/273 (60%), Positives = 215/273 (78%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 ++ ++ E H A Y+I+PG TKMY DL+ LYWW G+KKD+ EFVA+C CQ VK EH+ Sbjct: 523 IKEDILQEAHRAPYAIHPGGTKMYKDLKLLYWWPGIKKDVGEFVAKCLTCQQVKAEHRVP 582 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 G LQ + IP WKWE I MDF+TGLPR+Q D+IWVI+DRLTKSAHF+P+ TT++ E Sbjct: 583 AGKLQSLPIPVWKWEKITMDFVTGLPRSQAGHDAIWVIVDRLTKSAHFIPIHTTWTGERL 642 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 ++Y+ EIVRLHGVPTSI+SDR +F ++FWRS Q LGT+++ ST FHPQ+DG+SERTI Sbjct: 643 AQVYLDEIVRLHGVPTSIVSDRDTRFVSHFWRSLQDALGTRLDFSTAFHPQSDGQSERTI 702 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVG 49432 QTLEDMLRA +IDF+G W HLP+ EFAYNN Y +SI+MAP+EALYGRKCRSP+ W +VG Sbjct: 703 QTLEDMLRACVIDFQGGWSQHLPMAEFAYNNSYQASIKMAPFEALYGRKCRSPLHWSEVG 762 Query: 49431 ETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 E+ +GPD++Q+ KV++ +ERLL +QSR +S Sbjct: 763 ESLALGPDVLQEAEVKVRIARERLLTAQSRQRS 795 Score = 321 bits (813), Expect(3) = e-141 Identities = 177/444 (39%), Positives = 274/444 (60%), Gaps = 1/444 (0%) Frame = +2 Query: 9767 KIANLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLV 9946 K NL+QRRWLEL KDYD++ILYHPGKANVV +L R SM ++ + + ++ Sbjct: 391 KELNLRQRRWLELLKDYDLTILYHPGKANVVADALSRKSM--ENLAMHVVTQPRLIEQMK 448 Query: 9947 RLGVRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGV 10126 RL + I+ ++T + +L+ +KEK D +K + + F GDG+ Sbjct: 449 RLELEIVTPDTPMRLMTLVVQPTLLDRIKEKQASDVELQKIKGKMVDGCTGDFTLDGDGL 508 Query: 10127 LKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAM 10306 ++++ R+CVP G ++ I++++H ++ G KMY+ L+ +Y G+KKD+ +FVA Sbjct: 509 MRFRGRICVPADSGIKEDILQEAHRAPYAIHPGGTKMYKDLKLLYWWPGIKKDVGEFVAK 568 Query: 10307 FSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSS 10486 QQVK EH+ G +++ +P WKWE I MDF+ S+ H++I+VIVDRLTKS+ Sbjct: 569 CLTCQQVKAEHRVPAGKLQSLPIPVWKWEKITMDFVTGLPRSQAGHDAIWVIVDRLTKSA 628 Query: 10487 HFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VL 10666 HF+ + +T E A++Y+ ++ RLHG I+S+R F + W+S Q + G++L+ Sbjct: 629 HFIPIHTTWTGERLAQVYLDEIVRLHGVPTSIVSDRDTRFVSHFWRSLQDALGTRLDFST 688 Query: 10667 LF-ILKEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALY 10843 F + + + TI+TLE MLRACVIDF+ W ++P+ E++YNNSY +SI+MAP+EALY Sbjct: 689 AFHPQSDGQSERTIQTLEDMLRACVIDFQGGWSQHLPMAEFAYNNSYQASIKMAPFEALY 748 Query: 10844 GRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEV 11023 GR+ R + +VGES +G DV+ + K+++ +ER++T QS ++ D RRR LE +V Sbjct: 749 GRKCRSPLHWSEVGESLALGPDVLQEAEVKVRIARERLLTAQSRQRSYADRRRRDLEFQV 808 Query: 11024 DDWVYLKV*P*RVF*GLLIRGNLFP 11098 D V+LKV P R IRG L P Sbjct: 809 GDHVFLKVSPTRGIKRFGIRGKLSP 833 Score = 147 bits (368), Expect(3) = e-141 Identities = 119/319 (37%), Positives = 161/319 (50%), Gaps = 14/319 (4%) Frame = +1 Query: 8626 DREIDFGIQNIPDTRPISIP*YIMAPXXXXXXXXXXXDHVXXXXXXXXXXXXGSPRLVFK 8805 DREI+F I +P T PIS Y MAP D + G+P L K Sbjct: 2 DREIEFVIDLVPGTTPISKAPYRMAPAELRELRAQLQDLLDKGFIRPSVSPWGAPVLFVK 61 Query: 8806 EE--------------KVIP*DMYRLPPI**CNHKEKISSSKDIWSLRSTFGFFFLFQY* 8943 ++ KV + Y LP I + +++ S + G+ L + Sbjct: 62 KKDGSLRLCVDYRELNKVTIKNKYPLPRI--DDLFDQLQGSCVYSKIDLQSGYHQL-KIK 118 Query: 8944 PQIWLS*DESKGM*CSQDKFYKKVWALFISGYFHCFDIAPAAFMVLMHRVFKPFLDLFXX 9123 P+ D SK ++ Y+ +A+ G + AP AFM LM+RVFKP+LD F Sbjct: 119 PE-----DVSKTAFRTRYGHYE--FAVMPFGLTN----APTAFMDLMNRVFKPYLDRFVV 167 Query: 9124 XXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRV 9303 YS + DH LRIVLQ LR KE VK K EF L+ V FLGH+ISG GI V Sbjct: 168 VFIDDILVYSRSDADHEEHLRIVLQVLREKELYVKLKKCEFWLREVAFLGHLISGSGIAV 227 Query: 9304 DKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGC 9483 D +KIE+ +PR I SFL LA YYRRFV+RF+ +S+PLT++T V+F ++ C Sbjct: 228 DPKKIEAIKDWPRLTSVTEIRSFLGLAGYYRRFVERFAKLSTPLTRLTHKGVKFIWNDAC 287 Query: 9484 E*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 E F+EL +R ++VY AS Sbjct: 288 ERSFQELKQRLTTAPILTLPVAGAGYVVYSDAS 320 Score = 103 bits (254), Expect(4) = 0.0 Identities = 49/78 (62%), Positives = 61/78 (77%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 RS+AD RR DLEFQ+GD VFLKVSP +G+ R +GKLSPR+IGPY+I+ +G VAY L Sbjct: 794 RSYADRRRRDLEFQVGDHVFLKVSPTRGIKRFGIRGKLSPRFIGPYEILERVGPVAYRLA 853 Query: 49160 LPSDLEVVHPVFHVSMLR 49107 LP +L VH VFHVS++R Sbjct: 854 LPPNLSGVHNVFHVSVVR 871 Score = 96.0 bits (235), Expect = 5e-017 Identities = 49/105 (46%), Positives = 64/105 (60%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + DK FI ++SPWGA VLF++KK LR+C+DY + N VT K KYPL RI Sbjct: 40 LLDKGFIRPSVSPWGAPVLFVKKKDGSLRLCVDYRELNKVTIKNKYPLPRIDDLFDQLQG 99 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+L+SG H++K++ DV KT F RYGHY F V+ LT Sbjct: 100 SCVYSKIDLQSGYHQLKIKPEDVSKTAFRTRYGHYEFAVMPFGLT 144 Score = 84.3 bits (205), Expect(3) = e-141 Identities = 40/67 (59%), Positives = 54/67 (79%), Gaps = 1/67 (1%) Frame = +3 Query: 9570 LSCIL*-NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L + KVI Y S+ L YEKNYPTHD+ELA++VF+LK+W H+LYG R +++TD+KS Sbjct: 324 LGCVLMQDDKVIAYASRQLKEYEKNYPTHDLELAAVVFALKLWRHYLYGERCEVYTDHKS 383 Query: 9747 L*YVFTLK 9770 L Y+FT K Sbjct: 384 LKYLFTQK 391 Score = 58.9 bits (140), Expect = 6e-006 Identities = 27/51 (52%), Positives = 36/51 (69%) Frame = +1 Query: 11056 KGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISML 11208 +G+ RF +GKL PRFIG Y+I +RVG Y L LP L+ VH VFH+S++ Sbjct: 820 RGIKRFGIRGKLSPRFIGPYEILERVGPVAYRLALPPNLSGVHNVFHVSVV 870 Score = 39.9 bits (91), Expect = 3.5 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Frame = +3 Query: 42471 QDSLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTP-HNWKKISSKTIHRGRILK*DGPF 42647 ++ L A R ++ AD+ LEFQVG++V +K++P K+ + R + GP+ Sbjct: 783 RERLLTAQSRQRSYADRRRRDLEFQVGDHVFLKVSPTRGIKRFGIRGKLSPRFI---GPY 839 Query: 42648 DVIERAGEVSCMLKL 42692 +++ER G V+ L L Sbjct: 840 EILERVGPVAYRLAL 854 Score = 20.8 bits (42), Expect(4) = 0.0 Identities = 6/17 (35%), Positives = 12/17 (70%) Frame = -1 Query: 50201 DRVLQYEGRLCTPDIAG 50151 D ++++ GR+C P +G Sbjct: 506 DGLMRFRGRICVPADSG 522 >dbj|BAA95869.1| (AP002071) Similar to Sorghum bicolor 22 kDa kafirin cluster; polyprotein. (AF061282) [Oryza sativa] Length = 1524 Score = 582 bits (1484), Expect(3) = 0.0 Identities = 290/515 (56%), Positives = 374/515 (72%) Frame = -2 Query: 51790 LQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLR 51611 L+ + +V E+P+VF IEF ID++ T PI PYRM EL E+K+Q+ Sbjct: 549 LEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPIHKRPYRMGANELAEVKKQVD 608 Query: 51610 DLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQ 51431 + L+KG+IRPSTSPWGAPV+FV KKD + +M ++Y+ LN+VT+KN+YPLPRIDDLFDQL+ Sbjct: 609 EQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLK 668 Query: 51430 GAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVF 51251 GA FSKIDLRS YH++R+RE DIPKTAF TRYG ++ V+SFG+TNA A FM+LMN+VF Sbjct: 669 GATVFSKIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAFFMNLMNKVF 728 Query: 51250 KPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGH 51071 FLD FV+VF+DDIL+YS+SEEEH HLR VL L+ +LYA FSKC+FWL + FLGH Sbjct: 729 MEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQFLGH 788 Query: 51070 IIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKA 50891 I+ A G+ VD +E+V WT P T T+VRSFL LA YYRRF+E F+ I+ P+ +L +K Sbjct: 789 IVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQLLKKE 848 Query: 50890 AKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYA 50711 KF W+ C RSF LK +L AP L LP+ + +YCD S GLGCVLMQ GKV++YA Sbjct: 849 EKFIWSAECNRSFVELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVLMQDGKVVSYA 908 Query: 50710 SRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQR 50531 SRQLR HE NYPTHDL+L VVHALKIWRHYL G ++YTDHKSL+YIF Q +L LRQR Sbjct: 909 SRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQR 968 Query: 50530 RWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMREMVRDIQRLSSLGVCLA 50351 RWLEL+KDYD+ I YH GKANVV DALSRKS ++ V+ E+ RD++ L +LG+ Sbjct: 969 RWLELIKDYDMGIHYHPGKANVVADALSRKSYCNVAWVEQLCCEVQRDLEHL-NLGIV-- 1025 Query: 50350 NSEDSGVSI*EVAKSSIIDEVKRHQYKDPILAQYR 50246 E V+ E A+ +++++V+ Q DP +A+ + Sbjct: 1026 --EHGFVAALE-AQPTLVEQVRIAQASDPEIAELK 1057 Score = 340 bits (864), Expect(3) = 0.0 Identities = 155/273 (56%), Positives = 202/273 (73%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ ++ E H YSI+PGSTKMY DL+ +WW M+++IAEFVA C CQ VK EHQ+ Sbjct: 1090 LKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRP 1149 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 GLLQ ++IP WKWE I MDFITGLPRT DSIWV++DRLTK AHF+PV TTYS + Sbjct: 1150 AGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAHFIPVHTTYSGKKL 1209 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 LY+ I+ LHGVP I+SDRG+QFT+ FW+ Q+ LGT++N ST +HPQTDG++ER Sbjct: 1210 AELYLARIMCLHGVPKKIVSDRGSQFTSKFWQKLQEELGTRLNFSTAYHPQTDGQTERVN 1269 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVG 49432 Q LEDMLRA +DF G+WD LP EF+YNN Y +S+QMAP+EALYGR+CR+P+ W G Sbjct: 1270 QILEDMLRACALDFGGAWDKSLPYAEFSYNNSYQASLQMAPFEALYGRRCRTPLFWDQTG 1329 Query: 49431 ETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 E +L G +++ + +KV+ ++ERL +QSR KS Sbjct: 1330 ERQLFGTEVLNEAEEKVRAVRERLRIAQSRQKS 1362 Score = 310 bits (785), Expect(3) = e-130 Identities = 179/441 (40%), Positives = 264/441 (59%), Gaps = 3/441 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKE--ELAKDVHRLVR 9949 NL+QRRWLEL KDYDM I YHPGKANVV +L R S C E+ E+ +D+ L Sbjct: 964 NLRQRRWLELIKDYDMGIHYHPGKANVVADALSRKSY-CNVAWVEQLCCEVQRDLEHL-N 1021 Query: 9950 LGVRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL 10129 LG+ E G V A+ +LV V+ DP LK+N++ + F + G + Sbjct: 1022 LGI-----VEHGFVAALEAQPTLVEQVRIAQASDPEIAELKKNMRVGKARGFVEDEQGTI 1076 Query: 10130 KYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMF 10309 ERLCVP +DLI+ ++H T +S GS KMY+ L+E + ++++I +FVA+ Sbjct: 1077 WMGERLCVPENKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSMRREIAEFVALC 1136 Query: 10310 SNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSH 10489 Q+VK EHQR GL + +++P WKWE I MDFI + H+SI+V+VDRLTK +H Sbjct: 1137 DVCQRVKAEHQRPAGLLQPLQIPEWKWEEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAH 1196 Query: 10490 FLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLL 10669 F+ V +T + A+LY+ ++ LHG I+S+R + FT++ W+ Q+ G++LN Sbjct: 1197 FIPVHTTYSGKKLAELYLARIMCLHGVPKKIVSDRGSQFTSKFWQKLQEELGTRLNFSTA 1256 Query: 10670 FILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYG 10846 + + + + + + LE MLRAC +DF WD ++P E+SYNNSY +S+QMAP+EALYG Sbjct: 1257 YHPQTDGQTERVNQILEDMLRACALDFGGAWDKSLPYAEFSYNNSYQASLQMAPFEALYG 1316 Query: 10847 RRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVD 11026 RR R + + GE L G +V+++ +K++ ++ER+ QS +K D RRR L E Sbjct: 1317 RRCRTPLFWDQTGERQLFGTEVLNEAEEKVRAVRERLRIAQSRQKSYADNRRRELAFETG 1376 Query: 11027 DWVYLKV*P*RVF*GLLIRGNLFP 11098 D+VYL+V P R +G L P Sbjct: 1377 DYVYLRVTPLRGVHRFQTKGKLAP 1400 Score = 152 bits (379), Expect(3) = 0.0 Identities = 69/152 (45%), Positives = 107/152 (70%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 +S+ADNRR +L F+ GD+V+L+V+P++GV R KGKL+PR++GPY+I+ G+VAY+L+ Sbjct: 1361 KSYADNRRRELAFETGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPYRILERRGEVAYQLE 1420 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LPS++ +H VFHVS L+KC+ P D +++ E+ +Y EKP +L+ R+ R K Sbjct: 1421 LPSNMLGIHNVFHVSQLKKCLRVPEEQASPDQIEIQEDLTYVEKPTRILETSERKTRNKV 1480 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + KV W +++ EE T E EDE+K +P+LF Sbjct: 1481 IRFCKVQWSHHSEEEATWEREDELKATHPHLF 1512 Score = 129 bits (320), Expect(3) = e-130 Identities = 145/510 (28%), Positives = 221/510 (42%), Gaps = 36/510 (7%) Frame = +1 Query: 8053 NCQEQENCKYVFTSMIKVFTFDVYALLNPGANLSYLIPYVANHFEIVPEKLCEPFYISTP 8232 + +E ++ V V + L + GA S++ A + KL P + TP Sbjct: 390 SAEEAQSAPEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTP 449 Query: 8233 VGESILAERVYHDCHVSTNHNMTMADLVELYIVEFDVILGMD*LHALHALYVSIDCIK*V 8412 G + V + A+L+ L + DVILGMD L + IDC Sbjct: 450 -GGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGV---IDCASRT 505 Query: 8413 FKFQILNEPIIIVVQQCLRVLFYLIPYGEEVS-----PKLVYLSLSRA----NDLSVEVP 8565 K GEEV+ P+ +SL++A +++VE Sbjct: 506 IKLTNAK--------------------GEEVTFQSLVPRKPGVSLNQAAGEEQEVAVEKT 545 Query: 8566 SLQL--VCIVGK----FLDDLFGVPPDREIDFGIQNIPDTRPISIP*YIMAPXXXXXXXX 8727 + +L + IV + F DDL +PP R+I+F I +P T PI Y M Sbjct: 546 TKKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPIHKRPYRMGANELAEVKK 605 Query: 8728 XXXDHVXXXXXXXXXXXXGSPRLVFKEEK---------------VIP*DMYRLPPI**CN 8862 + + G+P ++F E+K V + Y LP I Sbjct: 606 QVDEQLQKGYIRPSTSPWGAP-VIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLF 664 Query: 8863 HKEKISSSKDIWSLRSTFGFFFLFQY*PQIWLS*DESKGM*CSQDKFYKKVWALFISGYF 9042 + K ++ LRS + + +++ K + G F Sbjct: 665 DQLKGATVFSKIDLRSGYHQLRI--------------------REEDIPKTAFITRYGLF 704 Query: 9043 HCFDIA------PAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTL 9204 C ++ PA FM LM++VF FLD F YS ++E+H LR+VL+ L Sbjct: 705 ECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKL 764 Query: 9205 RNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALA 9384 + + KFSK +F LK V FLGHI++ +G+ VD +ES + P + SFL LA Sbjct: 765 KEHQLYAKFSKCDFWLKEVQFLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLA 824 Query: 9385 YYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFI 9564 YYRRF++ FS I+ P+T++ + +F S C F EL +R F Sbjct: 825 GYYRRFIENFSKIAKPMTQLLKKEEKFIWSAECNRSFVELKRRLVSAPVLILPDQTKDFQ 884 Query: 9565 VYCHAS 9582 VYC AS Sbjct: 885 VYCDAS 890 Score = 86.6 bits (211), Expect = 3e-014 Identities = 45/102 (44%), Positives = 59/102 (57%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 K +I + SPWGA V+F+ KK R+C+DY N VT K KYPL RI Sbjct: 613 KGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATV 672 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+LRSG H++++RE D+PKT FI RYG + V+ LT Sbjct: 673 FSKIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLT 714 Score = 83.5 bits (203), Expect = 3e-013 Identities = 70/262 (26%), Positives = 128/262 (48%), Gaps = 27/262 (10%) Frame = -1 Query: 1127 KFLKLNPPVFKVAQSE-DAYDFLVDCHELLHKMGIVERFGVEFVTYQFKGNAKMWWRSHV 951 +FL++ PP F + +A+D+L + L+ + E+ V F T+Q +G A +WW +++ Sbjct: 95 EFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASVWWDNYM 154 Query: 950 GCQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFFSLEQGRMSLTAYEAKFRASSRYA 771 +PA A +TW F F + +P + +++ EF SL+QG ++ Y +F +RYA Sbjct: 155 VTRPAGAE-VTWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNLLARYA 213 Query: 770 TQLCFSPKERISRFVKGLR*ELRISALQVAATTKSFQEVVDFVIEVEGVKQDDFTMASTS 591 + + E+ +F+ GL EL + ++ + F+++VD + ++Q++ + Sbjct: 214 PEDVRTDAEKQEKFMSGLDDEL--TNQLISRDYEDFEKLVD-----KAIRQEEH--CNKI 264 Query: 590 NRFHKGGEF----------------NXXXXXXXXXXXYPVRPIQFSLQAVAGGPP*TSQH 459 NR K +F + P P F+ G + QH Sbjct: 265 NRKRKAAQFRTPQGKSQKPRFTMGHHGGPSTMIIRQHRPYHPGNFNKNHHNGSHNNSEQH 324 Query: 458 -FSKFGGYLQISSFSQRPMI---------KSRECYGCGKTGHIKRYCPK 342 + L+I + S +P + K C+ C K GH CPK Sbjct: 325 SLNPTPSSLKIPAQSVQPALPEQPKRLGEKPELCFNCNKPGHTVGKCPK 373 Score = 77.3 bits (187), Expect(3) = e-130 Identities = 36/65 (55%), Positives = 51/65 (78%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*-NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L +GKV+ Y S+ L +E NYPTHD+ELA++V +LKIW H+L G R +++TD+KS Sbjct: 894 LGCVLMQDGKVVSYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKS 953 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 954 LKYIFT 959 Score = 71.0 bits (171), Expect(2) = 1e-015 Identities = 34/78 (43%), Positives = 48/78 (60%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPS 11232 ++GV RF KGKL PRF+G Y+I +R G Y+LELP + +H VFH+S L K L P Sbjct: 1386 LRGVHRFQTKGKLAPRFVGPYRILERRGEVAYQLELPSNMLGIHNVFHVSQLKKCLRVPE 1445 Query: 11233 LIVPTKIVGIKDNLSYEE 11286 + I+++L+Y E Sbjct: 1446 EQASPDQIEIQEDLTYVE 1463 Score = 60.5 bits (144), Expect = 2e-006 Identities = 37/139 (26%), Positives = 71/139 (50%) Frame = -1 Query: 53342 DFLSCNPTEFFGSRPQDDPQKFICQMQRTLRISKASETESVELATYRLRDVDINWYESWE 53163 +FL P F + + ++ +++ L + + +E E V AT++L+ W++++ Sbjct: 95 EFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASVWWDNYM 154 Query: 53162 LSRGEGAPPMIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYA 52983 ++R GA + W EF +F + + + F L++ R+V EY EF+ L RYA Sbjct: 155 VTRPAGAE-VTWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNLLARYA 213 Query: 52982 PTIVADMADRVHRYVMGLD 52926 P V A++ +++ GLD Sbjct: 214 PEDVRTDAEKQEKFMSGLD 232 Score = 49.2 bits (115), Expect = 0.005 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%) Frame = +1 Query: 6901 SRVSEFLRMNTSSFTGTNTM*NLKNIVEEFKRIFEVIHVVDYERVELV*HELKCVAITWL 7080 S++ EFLR+ +F+ T + + ++ ++ + E+V H+L+ A W Sbjct: 91 SKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASVWW 150 Query: 7081 DQWKEGRANNATHPWWACFEKAFFERFFPRELNEEKVREFLTFKLDCINVHEYGLKFPKL 7260 D + R A W F +F + P + +K REF + + V EY +F L Sbjct: 151 DNYMVTRPAGA-EVTWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNLL 209 Query: 7261 SRYAP*MV-NDMERRVSF 7311 +RYAP V D E++ F Sbjct: 210 ARYAPEDVRTDAEKQEKF 227 Score = 46.1 bits (107), Expect = 0.047 Identities = 34/118 (28%), Positives = 56/118 (46%), Gaps = 1/118 (0%) Frame = -3 Query: 52299 SRQDQEASPNVITGILLLFS*SVYALIDPGSTL*FLSAFIASRIGIESELIE-PFEVATP 52123 S ++ +++P VI G + S L D G+T F+S A G+ ++ P V TP Sbjct: 390 SAEEAQSAPEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTP 449 Query: 52122 LGDSVIATRVYKNCSVVIYSRRTIADLIELTIIEFDIIMGMDWLAACYANVDYRGKIVR 51946 G + T + +V I A+LI L + D+I+GMDWL +D + ++ Sbjct: 450 -GGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVIDCASRTIK 507 Score = 40.6 bits (93), Expect(2) = 1e-015 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFESIENS 11450 I + RK R K + KV W + EEAT+E E++++ + HLF S S Sbjct: 1468 ILETSERKTRNKVIRFCKVQWSHHSEEEATWEREDELKATHPHLFASSSES 1518 Score = 39.1 bits (89), Expect = 6.1 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 5/75 (6%) Frame = +3 Query: 42468 VQDSLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKISSKTIHR----GRIL-K 42632 V++ LR A R K+ AD L F+ G+ V +++TP + +HR G++ + Sbjct: 1349 VRERLRIAQSRQKSYADNRRRELAFETGDYVYLRVTP-------LRGVHRFQTKGKLAPR 1401 Query: 42633 *DGPFDVIERAGEVSCMLKL 42692 GP+ ++ER GEV+ L+L Sbjct: 1402 FVGPYRILERRGEVAYQLEL 1421 >gb|AAD20658.1| (AC006570) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1611 Score = 555 bits (1415), Expect(4) = 0.0 Identities = 288/538 (53%), Positives = 372/538 (68%), Gaps = 2/538 (0%) Frame = -2 Query: 51880 ISYLKARKMVRKGYIYHLVRV--HDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIE 51707 IS ++A +M+ KG +L + ++ A A L+ + +V+EF DVF Sbjct: 591 ISAIQAERMLGKGCEAYLATITTKEVGASAE-LKDIPIVNEFSDVFAAVSGVPPDRSD-P 648 Query: 51706 FTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGS 51527 FTI++ T PI PYRMAPAE+ +LK+QL +LL+KGFIRPS+SPWGAPVLFV+KKDGS Sbjct: 649 FTIELEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSPWGAPVLFVKKKDGS 708 Query: 51526 LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTA 51347 ++ I+Y+ LNKVTVKN+YPLPRID+L DQL GA+ FSKIDL S YH++ + D+ KTA Sbjct: 709 FRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTA 768 Query: 51346 FWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADH 51167 F TRY H++F V+ FG+TNA A FM +MN VF+ FLD FVI+F++DILVYS+S E H +H Sbjct: 769 FRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEH 828 Query: 51166 LRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTE 50987 LR VL L+ +L+A SKC FW S+ FLGH+I G+ VD +KI ++K W RP TE Sbjct: 829 LRAVLERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATE 888 Query: 50986 VRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNL 50807 +RSFL LA YYRRFV FA ++ PL RLT K F W++ CE+SF LK LT AP L L Sbjct: 889 IRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVL 948 Query: 50806 PEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIW 50627 PE + Y +Y D S VGLGCVLMQ G VIAYASRQLRKHE NYPTHDL++ VV LKIW Sbjct: 949 PEEGEPYTVYTDASIVGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIW 1008 Query: 50626 RHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALS 50447 R YLYG V IYTDHKSL+YIF Q EL LRQRRW+EL+ DY++DI YH GKAN V DALS Sbjct: 1009 RSYLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYNLDIAYHPGKANQVADALS 1068 Query: 50446 RKSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQYKD 50267 R+ ++V+ E R V + + +L V + E + + ++ ++ ++ Q +D Sbjct: 1069 RRR----SEVEAE-RSQVDLVNMMGTLHVNALSKEVEPLGLGAADQADLLSRIRLAQERD 1123 Score = 326 bits (828), Expect(4) = 0.0 Identities = 148/273 (54%), Positives = 203/273 (74%), Gaps = 1/273 (0%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ +++ E H + +SI+PGS KMY DL+ Y W GMKKD+A +VA+C CQ VK EHQ Sbjct: 1159 LKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVP 1218 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPR-TQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 GLLQ + IP WKW+ I MDF+TGLP + K +++WV++DRLTKSAHF+ + AE Sbjct: 1219 SGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEI 1278 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 Y+ EIVRLHG+P SI+SDR +FT+ FW++FQK LGT+VNLST +HPQTD +SERT Sbjct: 1279 IAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERT 1338 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDV 49435 IQTLEDMLRA ++D+ G+W+ +L L+EFAYNN + +SI M+PYEALYGR CR+P+ W V Sbjct: 1339 IQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPV 1398 Query: 49434 GETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 GE +L GP ++ + +++K ++ +L +Q R KS Sbjct: 1399 GERRLFGPTIVDETTERMKFLKIKLKEAQDRQKS 1432 Score = 281 bits (711), Expect(7) = e-160 Identities = 158/423 (37%), Positives = 252/423 (59%), Gaps = 2/423 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 NL+QRRW+EL DY++ I YHPGKAN V +L R S ++ + V+ + L Sbjct: 1036 NLRQRRWMELVADYNLDIAYHPGKANQVADALSRRR----SEVEAERSQVDLVNMMGTLH 1091 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKY 10135 V + + + ++ L+S ++ ++D +N K + ++ +G + Sbjct: 1092 VNALSKEVEPLGLGAADQADLLSRIRLAQERDEEIKGWAQNNKTE----YQTSNNGTIVV 1147 Query: 10136 QERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSN 10315 R+CVPN ++ I+ ++H + FS GS KMYR L+ Y G+KKD+ ++VA Sbjct: 1148 NGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAKCPT 1207 Query: 10316 YQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*S-RRQHNSIFVIVDRLTKSSHF 10492 Q VK EHQ GL +N+ +P WKW+ I MDF+ + +HN+++V+VDRLTKS+HF Sbjct: 1208 CQLVKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHF 1267 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + +S + AE A+ YI ++ RLHG V I+S+R FT++ WK+FQK+ G+++N + Sbjct: 1268 MAISDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAY 1327 Query: 10673 ILKEVEK-QCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGR 10849 + E+ + TI+TLE MLRACV+D+ NW+ + L+E++YNNS+ +SI M+PYEALYGR Sbjct: 1328 HPQTDEQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGR 1387 Query: 10850 RGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVDD 11029 R + VGE L G +V + +++K ++ ++ Q +K + RR+ LE +V D Sbjct: 1388 ACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANKRRKELEFQVGD 1447 Query: 11030 WVYLK 11044 VYLK Sbjct: 1448 LVYLK 1452 Score = 131 bits (326), Expect(4) = 0.0 Identities = 67/152 (44%), Positives = 94/152 (61%), Gaps = 2/152 (1%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 +S+A+ RR +LEFQ+GD V+LK KG R + KLSPRY+GPY+++ +G VAY+LD Sbjct: 1431 KSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLD 1490 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQ--VIEEFSYEEKPIAMLDRQVRRLRT 48987 LP L H VFHVS LRKC+ D ++D+ + E + E P+ ++DR + R Sbjct: 1491 LPPKLNAFHNVFHVSQLRKCLSDQEE--SVEDIPPGLKENMTVEAWPVRIMDRMTKGTRG 1548 Query: 48986 KDVASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 K +KVLW REE T E E++MK +P F Sbjct: 1549 KARDLLKVLWNCRGREEYTWETENKMKANFPEWF 1582 Score = 118 bits (294), Expect(7) = e-160 Identities = 74/175 (42%), Positives = 91/175 (51%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APAAFM +M+ VF+ FLD F YS + E H LR VL+ LR E K SK Sbjct: 788 APAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHLRAVLERLREHELFAKLSK 847 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + V FLGH+IS +G+ VD EKI S +PRP I SFL LA YYRRFV F+ Sbjct: 848 CSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFA 907 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 S++ PLT++T F S+ CE F EL + VY AS Sbjct: 908 SMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLPEEGEPYTVYTDAS 962 Score = 84.3 bits (205), Expect(7) = e-160 Identities = 46/105 (43%), Positives = 58/105 (54%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + DK FI + SPWGA VLF++KK R+CIDY N VT K KYPL RI Sbjct: 682 LLDKGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGG 741 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+L SG H++ + DV KT F RY H+ F+V+ LT Sbjct: 742 AQWFSKIDLASGYHQIPIEPTDVRKTAFRTRYDHFEFVVMPFGLT 786 Score = 78.8 bits (191), Expect(7) = e-160 Identities = 38/65 (58%), Positives = 50/65 (76%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L G VI Y S+ L +EKNYPTHD+E+A++VF LKIW +LYG +V I+TD+KS Sbjct: 966 LGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFFLKIWRSYLYGAKVQIYTDHKS 1025 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 1026 LKYIFT 1031 Score = 71.8 bits (173), Expect(7) = e-160 Identities = 35/79 (44%), Positives = 50/79 (62%) Frame = +1 Query: 11047 LTMKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGD 11226 +T KG RF ++ KL PR++G YK+ +RVG Y+L+LP +L A H VFH+S L K L D Sbjct: 1454 MTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSD 1513 Query: 11227 PSLIVPTKIVGIKDNLSYE 11283 V G+K+N++ E Sbjct: 1514 QEESVEDIPPGLKENMTVE 1532 Score = 51.2 bits (120), Expect = 0.001 Identities = 56/270 (20%), Positives = 99/270 (35%), Gaps = 1/270 (0%) Frame = -1 Query: 53315 FFGSRPQDDPQKFICQMQRTLRISKASETESVELATYRLRDVDINWYESWELSRGEGAPP 53136 F GS ++ +++R + ++ E ++A + L NW+ + E RG+ Sbjct: 182 FMGSTDPIVADEWRSRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNWWLTVEKRRGDEVRS 241 Query: 53135 MIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYAPTIVADMAD 52956 +F + F + PE +L L + R+VREY EF+ L RY + + Sbjct: 242 FA--DFEDEFNKKYFPPEAWDRLECAYLDLVQGNRTVREYDEEFNRLRRYVGRELEEEQA 299 Query: 52955 RVHRYVMGLDRYLNYSCMAVTLQPSMD-IARVQAYAQGVEDRHRGR*PDRDYNRGHHKRA 52779 ++ R++ GL + C+ T + + R +G+E+ Sbjct: 300 QLRRFIRGLRIEIRNHCLVRTFNSVSELVERAAMIEEGIEEER----------------- 342 Query: 52778 RSGGYCNEF*GGKSQQHVRFXXXXXXXXXPRSMARGFDRTRYTEAGQSSRVSGSNLGRGL 52599 Y N + + +R P R FD+ T++ + Sbjct: 343 ----YLN-----REKAPIR----NNQSTKPADKKRKFDKVDNTKSDAKT----------- 378 Query: 52598 SQ*RPPLPRCSRCGRSHPGECRWAIGACFSC 52506 C CG++H G C AIGAC C Sbjct: 379 -------GECVTCGKNHSGTCWKAIGACGRC 402 Score = 50.0 bits (117), Expect = 0.003 Identities = 34/138 (24%), Positives = 65/138 (46%), Gaps = 1/138 (0%) Frame = -1 Query: 1022 ERFGVEFVTYQFKGNAKMWWRSHVGCQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEF 843 E + + + +G+A WW + + + ++A F F +KY P DR + Sbjct: 209 EDYQRDIAVHFLEGDAHNWWLTVEKRRGDEV--RSFADFEDEFNKKYFPPEAWDRLECAY 266 Query: 842 FSLEQGRMSLTAYEAKFRASSRYATQLCFSPKERISRFVKGLR*ELRISALQVAATTKSF 663 L QG ++ Y+ +F RY + + ++ RF++GLR E+R L T S Sbjct: 267 LDLVQGNRTVREYDEEFNRLRRYVGRELEEEQAQLRRFIRGLRIEIRNHCL--VRTFNSV 324 Query: 662 QEVVDFVIEV-EGVKQDDF 609 E+V+ + EG++++ + Sbjct: 325 SELVERAAMIEEGIEEERY 343 Score = 40.6 bits (93), Expect(4) = 0.0 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Frame = -3 Query: 52119 GDSVIATRVYKNCSVVIYSRRTIADLIELTIIEFDIIMGMDWLAACYANVD-YRGKI 51952 G ++ T + + SVV+ ADLI + + + D+I+GMDWL A++D +RG+I Sbjct: 512 GQAMYPTGLVRGISVVVNGVNMPADLIIVPLKKHDVILGMDWLGKYKAHIDCHRGRI 568 Score = 39.1 bits (89), Expect(7) = e-160 Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 12/133 (9%) Frame = +1 Query: 8305 ADLVELYIVEFDVILGMD*LHALHALYVSIDCIK*VFKFQ------------ILNEPIII 8448 ADL+ + + + DVILGMD L A IDC + +F+ + ++I Sbjct: 535 ADLIIVPLKKHDVILGMDWLGKYKA---HIDCHRGRIQFERDEGMLKFQGIRTTSGSLVI 591 Query: 8449 VVQQCLRVLFYLIPYGEEVSPKLVYLSLSRANDLSVEVPSLQLVCIVGKFLDDLFGVPPD 8628 Q R+L G+ L ++ S E+ + +V + GVPPD Sbjct: 592 SAIQAERML------GKGCEAYLATITTKEVG-ASAELKDIPIVNEFSDVFAAVSGVPPD 644 Query: 8629 REIDFGIQNIPDTRPISIP*YIMAP 8703 R F I+ P T PIS Y MAP Sbjct: 645 RSDPFTIELEPGTTPISKAPYRMAP 669 Score = 28.6 bits (62), Expect(7) = e-160 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFESI 11441 I D + R K +KVLW + EE T+E E M+ + F+ + Sbjct: 1538 IMDRMTKGTRGKARDLLKVLWNCRGREEYTWETENKMKANFPEWFKEM 1585 >gb|AAD22339.1|AC006955_25 (AC006955) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1411 Score = 579 bits (1477), Expect(4) = 0.0 Identities = 294/538 (54%), Positives = 372/538 (68%), Gaps = 1/538 (0%) Frame = -2 Query: 51880 ISYLKARKMVRKGYIYHLVRVHDINAEAPTLQS-VLVVDEFPDVFXXXXXXXXXXXKIEF 51704 IS ++A+KM+ KG +LV + + S + V+ EF DVF F Sbjct: 449 ISAVQAKKMIEKGCEAYLVTISMPESLGQVAVSDIRVIQEFEDVFQSLQGLPPSRSD-PF 507 Query: 51703 TIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSL 51524 TI++ T P+ PYRMAPAE+ ELK+QL DLL KGFIRPSTSPWGAPVLFV+KKDGS Sbjct: 508 TIELEPGTAPLSKAPYRMAPAEMTELKKQLEDLLGKGFIRPSTSPWGAPVLFVKKKDGSF 567 Query: 51523 QMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAF 51344 ++ I+Y+ LN VTVKN+YPLPRID+L DQL+GA CFSKIDL S YH++ + EAD+ KTAF Sbjct: 568 RLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAF 627 Query: 51343 WTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHL 51164 TRYGH++F V+ F +TNA A FM LMN VF+ FLD FVI+F+DDILVYS+S EEH HL Sbjct: 628 RTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHL 687 Query: 51163 RTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEV 50984 R V+ L+ QKL+A SKC FW + FLGHI+ A+G+ VD +KIEA++ W RPT TE+ Sbjct: 688 RRVMEKLREQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEI 747 Query: 50983 RSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLP 50804 RSFL L YYRRFV+ FA ++ P+ +LT K F W+ CE F LK+ LT P L LP Sbjct: 748 RSFLRLTGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALP 807 Query: 50803 EGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWR 50624 E Y++Y D S VGLGCVLMQ GKVIAYASRQLRKHE NYPTHDL++ +V+ ALKIWR Sbjct: 808 EHGQPYMVYTDASRVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWR 867 Query: 50623 HYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 YLYG V ++TDHKSL+YIF Q EL LRQ RW+EL+ DYD++I YH GKANVV DALSR Sbjct: 868 SYLYGGKVQVFTDHKSLKYIFNQPELNLRQMRWMELVADYDLEIAYHPGKANVVADALSR 927 Query: 50443 KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQYKD 50267 K +G+ E + + +L +C+ E G+ V ++ ++ + Q KD Sbjct: 928 KRVGAAPGQSVEAL-----VSEIGALRLCVVAREPLGLE--AVDRADLLTRARLAQEKD 979 Score = 278 bits (704), Expect(4) = 0.0 Identities = 137/280 (48%), Positives = 187/280 (65%), Gaps = 5/280 (1%) Frame = -3 Query: 50172 VYTRYC-----RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCS 50008 VY R C LRR+++ E H++ +SI+PG+TKMY DL+ Y W GMK+D+A +VA+C Sbjct: 1003 VYGRVCVPKDEELRREILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVANWVAECD 1062 Query: 50007 NCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHF 49828 CQ VK EHQ +P D+IWVI+DRLTKSAHF Sbjct: 1063 VCQLVKAEHQ----------VP----------------------DAIWVIMDRLTKSAHF 1090 Query: 49827 LPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTF 49648 L +R T A + YV EIV+LHGVP SI+SDR ++FT FWR+FQ +GT+V +ST + Sbjct: 1091 LAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAY 1150 Query: 49647 HPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGR 49468 HPQTDG+SERTIQTLEDMLR ++D+ G W DHL L+EFAYNN Y +SI MAP+EALYGR Sbjct: 1151 HPQTDGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGR 1210 Query: 49467 KCRSPIGWFDVGETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 C +P+ W V E + G D +Q+ +++++++ + +Q+R +S Sbjct: 1211 PCWTPLRWTQVEERSIYGADYVQETTERIRVLKLNMKEAQARQRS 1255 Score = 227 bits (573), Expect(6) = e-136 Identities = 146/424 (34%), Positives = 231/424 (54%), Gaps = 1/424 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 NL+Q RW+EL DYD+ I YHPGKANVV +L R +G + E L ++ L RL Sbjct: 894 NLRQMRWMELVADYDLEIAYHPGKANVVADALSRKRVGAAPG-QSVEALVSEIGAL-RLC 951 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKY 10135 V + G+ + A+ + + ++ D+ I E + ++ +G + Sbjct: 952 VVAREPL--GLEAVDRADLLTRARLAQEKDEGLIAASKAEGSE------YQFAANGTIFV 1003 Query: 10136 QERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSN 10315 R+CVP + + I+ ++H++ FS G+ KMYR L+ Y G+K+D+ +VA Sbjct: 1004 YGRVCVPKDEELRREILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVANWVAECDV 1063 Query: 10316 YQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFL 10495 Q VK EHQ +P ++I+VI+DRLTKS+HFL Sbjct: 1064 CQLVKAEHQ----------VP----------------------DAIWVIMDRLTKSAHFL 1091 Query: 10496 QVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFI 10675 + T+ A AK Y+ ++ +LHG V I+S+R + FT W++FQ G+K+ + Sbjct: 1092 AIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYH 1151 Query: 10676 LK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGRR 10852 + + + + TI+TLE MLR CV+D+ +W D++ L+E++YNNSY +SI MAP+EALYGR Sbjct: 1152 PQTDGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYQASIGMAPFEALYGRP 1211 Query: 10853 GRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVDDW 11032 +R +V E + G D V + ++++V++ M Q+ ++ D RRR LE EV D Sbjct: 1212 CWTPLRWTQVEERSIYGADYVQETTERIRVLKLNMKEAQARQRSYADKRRRELEFEVGDR 1271 Query: 11033 VYLKV 11047 VYLK+ Sbjct: 1272 VYLKM 1276 Score = 122 bits (304), Expect(4) = 0.0 Identities = 62/152 (40%), Positives = 93/152 (60%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 RS+AD RR +LEF++GD V+LK++ ++G R + KLSPRY+GP++IV +G VAY L+ Sbjct: 1254 RSYADKRRRELEFEVGDRVYLKMAMLRGPNRSILETKLSPRYMGPFRIVERVGPVAYRLE 1313 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LP + H VFHV MLRKC+ V + + E +P+ +L+R+++ LR K Sbjct: 1314 LPDVMRAFHKVFHVLMLRKCLHKDDEVLVKIPEDLQPNMTLEARPVRVLERRIKELRRKK 1373 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + +KVLW + E T E E MK ++ F Sbjct: 1374 IPLIKVLWDCDGVTEETWEPEARMKARFKKWF 1405 Score = 119 bits (295), Expect(6) = e-136 Identities = 72/175 (41%), Positives = 94/175 (53%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APAAFM LM+ VF+ FLD F YS + E+H LR V++ LR ++ K SK Sbjct: 646 APAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSK 705 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + + FLGHI+S EG+ VD EKIE+ +PRP I SFL L YYRRFV F+ Sbjct: 706 CSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLRLTGYYRRFVKGFA 765 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 S++ P+TK+T V F S CE F L + ++VY AS Sbjct: 766 SMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDAS 820 Score = 87.0 bits (212), Expect(6) = e-136 Identities = 47/105 (44%), Positives = 59/105 (55%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + K FI + SPWGA VLF++KK R+CIDY N VT K KYPL RI Sbjct: 540 LLGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRG 599 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+L SG H++ + E DV KT F RYGH+ F+V+ LT Sbjct: 600 ATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFALT 644 Score = 75.3 bits (182), Expect(6) = e-136 Identities = 36/64 (56%), Positives = 49/64 (76%), Gaps = 1/64 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L GKVI Y S+ L +E NYPTHD+E+A ++F+LKIW +LYG +V +FTD+KS Sbjct: 824 LGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDHKS 883 Query: 9747 L*YVF 9761 L Y+F Sbjct: 884 LKYIF 888 Score = 68.3 bits (164), Expect = 1e-008 Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 1/244 (0%) Frame = -1 Query: 1361 ELPPQPTPEMINQVLAYLSGLSDQGQTPPIFSAPAPQVPEVQHAASVAPRMDASLEISTF 1182 ++P ++ Q+L L G+ P+ + AP++ EVQ A+VA + + L Sbjct: 76 QVPEVGLAGLLRQLLERLPGVV------PVEAPVAPRMAEVQQRAAVAEEVPSYLR---- 125 Query: 1181 PRLTTGPIMTSDQHELFSKFLKLNPPVFKVAQS-EDAYDFLVDCHELLHKMGIVERFGVE 1005 + + ++ F S E+A + + V+ Sbjct: 126 ---------------MMEQLQRIGTWYFSSGTSPEEADSWRSRVQRNFGSSRCPAEYRVD 170 Query: 1004 FVTYQFKGNAKMWWRSHVGCQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFFSLEQG 825 + +G+A +WWRS V + QA M+WA F + F KY P+ DR F L QG Sbjct: 171 LAVHFLEGDAHLWWRS-VTARRRQAD-MSWADFVAEFNAKYFPQEALDRMEARFLELTQG 228 Query: 824 RMSLTAYEAKFRASSRYATQLCFSPKERISRFVKGLR*ELRISALQVAATTKSFQEVVDF 645 S+ Y+ +F YA + + ++ RF++GLR +LR+ TK+ +V+ Sbjct: 229 EWSVREYDREFNRLLAYAGRGMEDDQAQMRRFLRGLRPDLRVQCRVSQYATKA--ALVET 286 Query: 644 VIEVE 630 EVE Sbjct: 287 AAEVE 291 Score = 52.7 bits (124), Expect(6) = e-136 Identities = 25/56 (44%), Positives = 36/56 (63%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFL 11220 ++G R + + KL PR++G ++I +RVG Y LELP + A H VFH+ ML K L Sbjct: 1279 LRGPNRSILETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVLMLRKCL 1334 Score = 50.0 bits (117), Expect = 0.003 Identities = 49/176 (27%), Positives = 73/176 (40%), Gaps = 1/176 (0%) Frame = -1 Query: 53354 LRARDFLSCNPTEFFGSRPQ-DDPQKFICQMQRTLRISKASETESVELATYRLRDVDINW 53178 LR + L T +F S ++ + ++QR S+ V+LA + L W Sbjct: 124 LRMMEQLQRIGTWYFSSGTSPEEADSWRSRVQRNFGSSRCPAEYRVDLAVHFLEGDAHLW 183 Query: 53177 YESWELSRGEGAPPMIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD* 52998 + S R + M W +FV F + E RFL L + SVREY EF+ Sbjct: 184 WRSVTARRRQA--DMSWADFVAEFNAKYFPQEALDRMEARFLELTQGEWSVREYDREFNR 241 Query: 52997 LTRYAPTIVADMADRVHRYVMGLDRYLNYSCMAVTLQPSMDIARVQAYAQGVEDRHR 52827 L YA + D ++ R++ GL L C Q + A V+ A+ ED R Sbjct: 242 LLAYAGRGMEDDQAQMRRFLRGLRPDLRVQCR--VSQYATKAALVETAAEVEEDLQR 296 Score = 39.1 bits (89), Expect(6) = e-136 Identities = 17/46 (36%), Positives = 28/46 (59%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFE 11435 + + ++++LR KK+ +KVLW V E T+E E M+ R+ FE Sbjct: 1361 VLERRIKELRRKKIPLIKVLWDCDGVTEETWEPEARMKARFKKWFE 1406 Score = 38.7 bits (88), Expect = 8.0 Identities = 24/77 (31%), Positives = 44/77 (56%), Gaps = 3/77 (3%) Frame = +3 Query: 42477 SLRKATKRMKNNADQH*HTLEFQVGNNVLIK---LTPHNWKKISSKTIHRGRILK*DGPF 42647 ++++A R ++ AD+ LEF+VG+ V +K L N + +K R GPF Sbjct: 1245 NMKEAQARQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSILETKLSPRYM-----GPF 1299 Query: 42648 DVIERAGEVSCMLKLSEILK 42707 ++ER G V+ L+L ++++ Sbjct: 1300 RIVERVGPVAYRLELPDVMR 1319 Score = 30.5 bits (67), Expect(4) = 0.0 Identities = 16/46 (34%), Positives = 26/46 (55%), Gaps = 1/46 (2%) Frame = -3 Query: 52089 KNCSVVIYSRRTIADLIELTIIEFDIIMGMDWLAACYANVD-YRGKI 51952 K + I ADLI + +D+I+GMDWL ++D +RG++ Sbjct: 380 KGVDIQIAGESMPADLIISPVELYDVILGMDWLDHYRVHLDCHRGRV 426 >gb|AAF67363.1| (AF262041) Hypothetical protein T32B20.f [Arabidopsis thaliana] Length = 1504 Score = 511 bits (1302), Expect(4) = 0.0 Identities = 271/538 (50%), Positives = 348/538 (64%), Gaps = 3/538 (0%) Frame = -2 Query: 51880 ISYLKARKMVRKGYIYHLVRV---HDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKI 51710 IS ++A KM+ KG +LV + + E P +S Sbjct: 570 ISAVQAEKMIEKGCEAYLVMISMPESVGQELPPSRSD----------------------- 606 Query: 51709 EFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDG 51530 FTI++ T P+ PYRM P E+ ELK+QL DLL KGFIR +TSPW VLFV+KKDG Sbjct: 607 PFTIELEPGTAPLSKAPYRMVPVEMAELKKQLEDLLGKGFIRLNTSPWRTSVLFVKKKDG 666 Query: 51529 SLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKT 51350 S ++ I+Y++LN+VTVKN+YPLPRID+L DQL+GA CFSKIDL S YH++ + EAD+ KT Sbjct: 667 SFRLCIDYRELNRVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKT 726 Query: 51349 AFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHAD 51170 AF TRYGH++F V+ FG+TNA A FM LMN VF+ FLD FVI+F+DDILVYS+S EEH Sbjct: 727 AFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHDV 786 Query: 51169 HLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPT 50990 HLR V+ L+ +KL+A SKC FW + FLGHI+ +G+ VD +KIEA++ W RPT T Sbjct: 787 HLRRVMEKLREEKLFAKLSKCSFWQRKMGFLGHIVSVEGVSVDPEKIEAIRDWPRPTNAT 846 Query: 50989 EVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLN 50810 E+RSFL LA YYRRFV+ FA ++ P+ +LT K F W+ CE F L LT P L Sbjct: 847 EIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSL---LTSTPVLA 903 Query: 50809 LPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKI 50630 LPE + Y++Y D SGVGLGCVLMQ GKVIAYASRQLRKHE NYPTHDL++ V Sbjct: 904 LPEHGEPYMVYTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAV------ 957 Query: 50629 WRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDAL 50450 +TDHKSL+YIF Q EL LRQRRW+EL+ DYD++I YH KAN+V DAL Sbjct: 958 ------------FTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPSKANMVADAL 1005 Query: 50449 SRKSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQYK 50270 S K +G+ E + + +L +C E G+ V ++ ++ V+ Q K Sbjct: 1006 SCKLVGAAPGQSVEAL-----VSEIGALRLCAVAREPLGLE--AVDRADLLTRVRLAQEK 1058 Query: 50269 D 50267 D Sbjct: 1059 D 1059 Score = 264 bits (668), Expect(4) = 0.0 Identities = 129/281 (45%), Positives = 186/281 (65%), Gaps = 5/281 (1%) Frame = -3 Query: 50175 IVYTRYC-----RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQC 50011 +V+ R C LRR+++ E H++ +SI+PG+TKMY DL+ Y W GMK+D+A +VA+C Sbjct: 1082 LVHGRVCVPKDEELRREILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVANWVAEC 1141 Query: 50010 SNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAH 49831 CQ VK EHQ G +LQ + IP WKW+ I MDF+ GLP ++ K D+IWVI+DRLTKSA+ Sbjct: 1142 DVCQLVKAEHQVPGSMLQSLPIPDWKWDFITMDFVVGLPVSRTK-DAIWVIVDRLTKSAY 1200 Query: 49830 FLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTT 49651 FL +R T A + YV EIV+LHGVP SI+SDR +FT+ FWR+FQ + T+V +ST Sbjct: 1201 FLAIRKTDGATVLAKKYVSEIVKLHGVPVSIVSDRDFKFTSAFWRAFQAEMDTKVQMSTA 1260 Query: 49650 FHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 +HPQTDG+SERTIQTLEDMLR ++D+ G W DHL L++ ++ + P Sbjct: 1261 YHPQTDGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVD-VVREAMQDTVMLDP------ 1313 Query: 49470 RKCRSPIGWFDVGETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 GE + G D +Q+ +++++++ + +Q R +S Sbjct: 1314 -----------SGERSIYGADYVQETTERIRVLKLNMKEAQDRHRS 1348 Score = 208 bits (525), Expect(7) = e-124 Identities = 131/424 (30%), Positives = 225/424 (52%), Gaps = 1/424 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 NL+QRRW+EL DYD+ I YHP KAN+V +L +G + E L ++ L Sbjct: 974 NLRQRRWMELVADYDLEIAYHPSKANMVADALSCKLVGAAPG-QSVEALVSEIGAL---- 1028 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKY 10135 R+ + + + L++ V+ ++D + + ++ ++ +G + Sbjct: 1029 -RLCAVAREPLGLEAVDRADLLTRVRLAQEKDEGLIAASKAEGSE----YQFAANGTILV 1083 Query: 10136 QERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSN 10315 R+CVP + + I+ ++H++ FS G+ KMYR L+ Y G+K+D+ +VA Sbjct: 1084 HGRVCVPKDEELRREILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVANWVAECDV 1143 Query: 10316 YQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFL 10495 Q VK EHQ G + +++ +P WKW+ I MDF+ SR + ++I+VIVDRLTKS++FL Sbjct: 1144 CQLVKAEHQVPGSMLQSLPIPDWKWDFITMDFVVGLPVSRTK-DAIWVIVDRLTKSAYFL 1202 Query: 10496 QVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFI 10675 + T+ A AK Y+ ++ +LHG V I+S+R FT+ W++FQ +K+ + Sbjct: 1203 AIRKTDGATVLAKKYVSEIVKLHGVPVSIVSDRDFKFTSAFWRAFQAEMDTKVQMSTAYH 1262 Query: 10676 LK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGRR 10852 + + + + TI+TLE MLR CV+D+ +W D++ L++ + ++ + P Sbjct: 1263 PQTDGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVDV-VREAMQDTVMLDP-------- 1313 Query: 10853 GRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVDDW 11032 GE + G D V + ++++V++ M Q + D R+R LE EV D Sbjct: 1314 ---------SGERSIYGADYVQETTERIRVLKLNMKEAQDRHRSYADKRKRELEFEVGDG 1364 Query: 11033 VYLKV 11047 VYLK+ Sbjct: 1365 VYLKM 1369 Score = 118 bits (293), Expect(4) = 0.0 Identities = 61/152 (40%), Positives = 92/152 (60%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 RS+AD R+ +LEF++GD V+LK++ ++G R + KLSPRYIGP++IV +G VAY L+ Sbjct: 1347 RSYADKRKRELEFEVGDGVYLKMAMLRGPNRSISEIKLSPRYIGPFRIVERVGPVAYRLE 1406 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LP + VFHVSMLRKC+ V + + E + + +L+R+++ LR K Sbjct: 1407 LPDVMRAFRKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARLVRVLERRIKELRRKK 1466 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + +KVLW + E T E E MK ++ F Sbjct: 1467 IPLIKVLWDCDGVTEETWEPEARMKARFKKWF 1498 Score = 115 bits (286), Expect(7) = e-124 Identities = 69/149 (46%), Positives = 88/149 (58%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APAAFM LM+ VF+ FLD F YS + E+H LR V++ LR ++ K SK Sbjct: 747 APAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHDVHLRRVMEKLREEKLFAKLSK 806 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + + FLGHI+S EG+ VD EKIE+ +PRP I SFL LA YYRRFV F+ Sbjct: 807 CSFWQRKMGFLGHIVSVEGVSVDPEKIEAIRDWPRPTNATEIRSFLGLAGYYRRFVKGFA 866 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFREL 9504 S++ P+TK+T V F S CE F L Sbjct: 867 SMAQPMTKLTGKDVPFVWSPECEEGFVSL 895 Score = 86.2 bits (210), Expect(7) = e-124 Identities = 46/105 (43%), Positives = 58/105 (54%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + K FI N SPW VLF++KK R+CIDY + N VT K KYPL RI Sbjct: 641 LLGKGFIRLNTSPWRTSVLFVKKKDGSFRLCIDYRELNRVTVKNKYPLPRIDELLDQLRG 700 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+L SG H++ + E DV KT F RYGH+ F+V+ LT Sbjct: 701 ATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLT 745 Score = 54.3 bits (128), Expect(7) = e-124 Identities = 28/77 (36%), Positives = 45/77 (58%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPS 11232 ++G R +++ KL PR+IG ++I +RVG Y LELP + A VFH+SML K L Sbjct: 1372 LRGPNRSISEIKLSPRYIGPFRIVERVGPVAYRLELPDVMRAFRKVFHVSMLRKCLHKDD 1431 Query: 11233 LIVPTKIVGIKDNLSYE 11283 ++ ++ N++ E Sbjct: 1432 EVLAKIPEDLQPNMTLE 1448 Score = 50.0 bits (117), Expect = 0.003 Identities = 48/197 (24%), Positives = 77/197 (38%), Gaps = 1/197 (0%) Frame = -1 Query: 1361 ELPPQPTPEMINQVLAYLSGLSDQGQTPPIFSAPAPQVPEVQHAASVAPRMDASLEI-ST 1185 ++P ++ Q+L L G+ P+ + AP+V EVQ A+VA + + L + Sbjct: 92 QIPEVGLAGLLRQLLERLPGVV------PVEAPVAPRVAEVQQRAAVAEEVPSYLRMMEQ 145 Query: 1184 FPRLTTGPIMTSDQHELFSKFLKLNPPVFKVAQSEDAYDFLVDCHELLHKMGIVERFGVE 1005 R+ TG E+A + + V+ Sbjct: 146 LQRIGTGYFSGG-------------------TSPEEADSWRSRVERNFGSSRCPAEYRVD 186 Query: 1004 FVTYQFKGNAKMWWRSHVGCQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFFSLEQG 825 + +G+A +WWRS V + QA M+W F + F KY + DR F L QG Sbjct: 187 LAVHFLEGDAHLWWRS-VTARRRQAD-MSWTDFVAEFNAKYFAQEALDRMEALFLELTQG 244 Query: 824 RMSLTAYEAKFRASSRYA 771 S+ Y+ +F YA Sbjct: 245 ERSVREYDQEFNRLLVYA 262 Score = 46.5 bits (108), Expect(7) = e-124 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L GKVI Y S+ L +E NYPTHD+E+A+ +FTD+KS Sbjct: 922 LGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAA------------------VFTDHKS 963 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 964 LKYIFT 969 Score = 42.6 bits (98), Expect = 0.54 Identities = 31/111 (27%), Positives = 46/111 (40%) Frame = -1 Query: 53315 FFGSRPQDDPQKFICQMQRTLRISKASETESVELATYRLRDVDINWYESWELSRGEGAPP 53136 F G ++ + +++R S+ V+LA + L W+ S R + Sbjct: 154 FSGGTSPEEADSWRSRVERNFGSSRCPAEYRVDLAVHFLEGDAHLWWRSVTARRRQA--D 211 Query: 53135 MIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYA 52983 M W +FV F + E FL L + RSVREY EF+ L YA Sbjct: 212 MSWTDFVAEFNAKYFAQEALDRMEALFLELTQGERSVREYDQEFNRLLVYA 262 Score = 40.6 bits (93), Expect(7) = e-124 Identities = 19/49 (38%), Positives = 30/49 (60%) Frame = +3 Query: 11289 LV*IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFE 11435 LV + + ++++LR KK+ +KVLW V E T+E E M+ R+ FE Sbjct: 1451 LVRVLERRIKELRRKKIPLIKVLWDCDGVTEETWEPEARMKARFKKWFE 1499 Score = 33.6 bits (75), Expect(4) = 0.0 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Frame = -3 Query: 52302 TSRQDQEASPNVITGIL---------LLFS*SVYALIDPGSTL*FLSAFIASRIGIESEL 52150 T+R+ S ITG L L+ + L D G++ F++ ASR I + Sbjct: 420 TTREIGGTSNRAITGFLAHEVCVETLLVGGVEAHVLFDSGASHCFITPESASRGNIRGDP 479 Query: 52149 IEPFEVATPLGDSVIAT-RVYKNCSVVIYSRRTIADLIELTIIEFDIIMGMDWLAACYAN 51973 E G +A K + I A LI + +D+I+GMDWL + Sbjct: 480 GEQLGAVKVAGGQFLAVLERAKGVDIQIAGESMPAHLIISPVELYDVILGMDWLDHYRVH 539 Query: 51972 VDYRGKIVRFQ 51940 +D V F+ Sbjct: 540 LDCHHGRVSFE 550 Score = 27.0 bits (58), Expect(7) = e-124 Identities = 57/238 (23%), Positives = 89/238 (36%), Gaps = 6/238 (2%) Frame = +1 Query: 7990 AAPKG-ATFDTGGEANHLYGITNCQEQENCKYVFTSMIKVFTFDVYALLNPGANLSYLIP 8166 AAP+G T + GG +N IT E C + V + + L + GA+ ++ P Sbjct: 414 AAPQGYTTREIGGTSNR--AITGFLAHEVC----VETLLVGGVEAHVLFDSGASHCFITP 467 Query: 8167 YVANHFEIVPEKLCEPFYISTPVGESILAERVYHDCHVSTNHNMTMADLVELYIVEFDVI 8346 A+ I + + + G+ + + A L+ + +DVI Sbjct: 468 ESASRGNIRGDPGEQLGAVKVAGGQFLAVLERAKGVDIQIAGESMPAHLIISPVELYDVI 527 Query: 8347 LGMD*LHALHALYVSIDCIK*VFKFQILNEPIIIVVQQCLRVLFYLIPYGEEVSPKLVYL 8526 LGMD L V +DC F+ R L+ G + + + Sbjct: 528 LGMDWLDHYR---VHLDCHHGRVSFE--------------RPEGRLVYQGVRPTSGSLVI 570 Query: 8527 SLSRANDLSVEVPSLQLVCI-----VGKFLDDLFGVPPDREIDFGIQNIPDTRPISIP*Y 8691 S +A + + LV I VG+ L PP R F I+ P T P+S Y Sbjct: 571 SAVQAEKMIEKGCEAYLVMISMPESVGQEL------PPSRSDPFTIELEPGTAPLSKAPY 624 Query: 8692 IMAP 8703 M P Sbjct: 625 RMVP 628 >gb|AAD38284.1|AC007789_10 (AC007789) putative polyprotein [Oryza sativa] Length = 1220 Score = 584 bits (1490), Expect(3) = 0.0 Identities = 287/515 (55%), Positives = 377/515 (72%) Frame = -2 Query: 51790 LQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLR 51611 L+ + +V E+P+VF +IEF ID+ T PI+ PYRMA EL E+K+Q+ Sbjct: 546 LEEIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVD 605 Query: 51610 DLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQ 51431 + L+KG+IRPSTSPWGAPV+FV KKD + +M ++Y+ LN+VT+KN+YPLPRIDDLFDQL+ Sbjct: 606 EQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLK 665 Query: 51430 GAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVF 51251 GAK FSKIDLRS YH++R+RE DIPKTAF T+YG Y+ V+SFG+TNA A FM+LMN+VF Sbjct: 666 GAKVFSKIDLRSGYHQLRIREEDIPKTAFTTQYGLYECTVMSFGLTNAPAFFMNLMNKVF 725 Query: 51250 KPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGH 51071 FLD FV+VF+DDIL+YS+ EEEH HLR VL L+ +LYA FSKC+FWL+ + FLGH Sbjct: 726 MEFLDKFVVVFIDDILIYSKLEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLSEVKFLGH 785 Query: 51070 IIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKA 50891 II A G+ VD+ +E+V WT P T +++RSFL LA YYRRF+E F+ I+ P+ +L +K Sbjct: 786 IITAQGVAVDSSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTQLLKKD 845 Query: 50890 AKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYA 50711 KF WT C++SF LK KL AP L LP+ + +YCD S GLGCVLMQ G+V+AYA Sbjct: 846 EKFKWTAECDKSFEELKKKLVSAPVLILPDQMKDFQVYCDASRHGLGCVLMQEGRVVAYA 905 Query: 50710 SRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQR 50531 SRQLR HE NYPTHDL+L +VVHALKIWRHYL G ++YTDHKSL+YIF Q +L LRQR Sbjct: 906 SRQLRPHEGNYPTHDLELAVVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLRQR 965 Query: 50530 RWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMREMVRDIQRLSSLGVCLA 50351 RWLEL+KDYD+ I YH GKANVV DALSRKS + + E+ ++++RL ++G+ Sbjct: 966 RWLELIKDYDMSIHYHPGKANVVADALSRKSYCNALCTEDMCEELQQELERL-NVGIV-- 1022 Query: 50350 NSEDSGVSI*EVAKSSIIDEVKRHQYKDPILAQYR 50246 E V+ E A+ +++D+ + Q DP + + + Sbjct: 1023 --EHRFVAALE-ARPTLVDQFRAAQVNDPEIVELK 1054 Score = 178 bits (448), Expect(4) = e-105 Identities = 106/260 (40%), Positives = 156/260 (59%), Gaps = 2/260 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEK--EELAKDVHRLVR 9949 NL+QRRWLEL KDYDMSI YHPGKANVV +L R S C ++ E EEL +++ RL Sbjct: 961 NLRQRRWLELIKDYDMSIHYHPGKANVVADALSRKSY-CNALCTEDMCEELQQELERL-N 1018 Query: 9950 LGVRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL 10129 +G+ E V A +LV + DP + LK+N++ + F + + Sbjct: 1019 VGI-----VEHRFVAALEARPTLVDQFRAAQVNDPEIVELKKNMRVGKARDFLEDEHRTI 1073 Query: 10130 KYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMF 10309 ERLCVP+ +DLI+ ++H T +S GS KMY+ L+E + ++++I +FVA+ Sbjct: 1074 WMGERLCVPDDKELKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSMRREIAEFVALC 1133 Query: 10310 SNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSH 10489 Q+VK EHQR GL + +++P WKWE I MDFI + H+SI+V+VDRLTK +H Sbjct: 1134 DVCQRVKAEHQRPVGLFQPLQIPKWKWEEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAH 1193 Query: 10490 FLQVSSTNLAEDYAKLYIQKVE 10555 F+ V +T + A+L + ++E Sbjct: 1194 FIPVHTTYTGKKLAELCLARIE 1215 Score = 156 bits (390), Expect(3) = 0.0 Identities = 72/128 (56%), Positives = 90/128 (70%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ ++ E H YSI+PGSTKMY DL+ +WW M+++IAEFVA C CQ VK EHQ+ Sbjct: 1087 LKDLILTEAHQTQYSIHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRP 1146 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 GL Q ++IP WKWE I MDFITGLPRT DSIWV++DRLTK AHF+PV TTY+ + Sbjct: 1147 VGLFQPLQIPKWKWEEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAHFIPVHTTYTGKKL 1206 Query: 49791 VRLYVREI 49768 L + I Sbjct: 1207 AELCLARI 1214 Score = 118 bits (293), Expect(4) = e-105 Identities = 69/175 (39%), Positives = 94/175 (53%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA FM LM++VF FLD F YS +E+H LR+VL+ L+ + KFSK Sbjct: 713 APAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKLEEEHEQHLRLVLEKLKEHQLYAKFSK 772 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 +F L V FLGHII+ +G+ VD +ES + P I SFL LA YYRRF++ FS Sbjct: 773 CDFWLSEVKFLGHIITAQGVAVDSSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFS 832 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 I+ P+T++ +F+ + C+ F EL K+ F VYC AS Sbjct: 833 RIARPMTQLLKKDEKFKWTAECDKSFEELKKKLVSAPVLILPDQMKDFQVYCDAS 887 Score = 84.3 bits (205), Expect(4) = e-105 Identities = 44/102 (43%), Positives = 58/102 (56%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 K +I + SPWGA V+F+ KK R+C+DY N VT K KYPL RI Sbjct: 610 KGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKV 669 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+LRSG H++++RE D+PKT F +YG Y V+ LT Sbjct: 670 FSKIDLRSGYHQLRIREEDIPKTAFTTQYGLYECTVMSFGLT 711 Score = 75.7 bits (183), Expect = 6e-011 Identities = 67/262 (25%), Positives = 121/262 (45%), Gaps = 25/262 (9%) Frame = -1 Query: 1127 KFLKLNPPVFKVAQSE-DAYDFLVDCHELLHKMGIVERFGVEFVTYQFKGNAKMWWRSHV 951 +FL++ PP F + A D+L + L+ + ++ V F T+Q +G A WW +H+ Sbjct: 94 EFLRVRPPTFSSTTNPMKANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHM 153 Query: 950 GCQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFFSLEQGRMSLTAYEAKFRASSRYA 771 +P +TWA F F + + + +++ EF +L QG ++T Y +F +RYA Sbjct: 154 TTRP-PGTEVTWAEFCRNFRKAQVLDGVVAQKKREFRALHQGNRTVTEYLHEFDRLARYA 212 Query: 770 TQLCFSPKERISRFVKGLR*ELRISALQVAATTKSFQEVVDFVIEVEGVKQDDFTMASTS 591 + + ++ +F+ GL EL + ++ F+ +VD + ++Q+D + Sbjct: 213 PEDVRTDAKKQEKFLAGLDDEL--TNQLISGDYADFERLVD-----KAIRQED--QHNKM 263 Query: 590 NRFHKGGEFNXXXXXXXXXXXYPVRPIQFSLQAVAGGPP*TSQHF--------SKFGGYL 435 +R K +F P + + + V P S +F + GG Sbjct: 264 DRKRKAAQFRSNQASHQRPRFIPRQQGEPTTMIVRQHRPFNSSNFHQGASGSQNHRGGQP 323 Query: 434 QISSFSQRPM----------------IKSRECYGCGKTGHIKRYCPK 342 S+ + PM K C+ CG+ GH CPK Sbjct: 324 NRSATPRPPMAPAQSAPSVQAKKETGAKPGSCFNCGELGHFADKCPK 370 Score = 73.7 bits (178), Expect(4) = e-105 Identities = 35/65 (53%), Positives = 49/65 (74%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L G+V+ Y S+ L +E NYPTHD+ELA +V +LKIW H+L G R +++TD+KS Sbjct: 891 LGCVLMQEGRVVAYASRQLRPHEGNYPTHDLELAVVVHALKIWRHYLIGNRCEVYTDHKS 950 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 951 LKYIFT 956 Score = 58.9 bits (140), Expect = 6e-006 Identities = 44/171 (25%), Positives = 77/171 (44%) Frame = -1 Query: 53342 DFLSCNPTEFFGSRPQDDPQKFICQMQRTLRISKASETESVELATYRLRDVDINWYESWE 53163 +FL P F + ++ +++ L + + ++ E V AT++L+ W+++ Sbjct: 94 EFLRVRPPTFSSTTNPMKANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHM 153 Query: 53162 LSRGEGAPPMIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYA 52983 +R G + W EF F+ +L + + F L + R+V EY EFD L RYA Sbjct: 154 TTRPPGTE-VTWAEFCRNFRKAQVLDGVVAQKKREFRALHQGNRTVTEYLHEFDRLARYA 212 Query: 52982 PTIVADMADRVHRYVMGLDRYLNYSCMAVTLQPSMDIARVQAYAQGVEDRH 52830 P V A + +++ GLD L ++ D R+ A ED+H Sbjct: 213 PEDVRTDAKKQEKFLAGLDDELTNQLIS---GDYADFERLVDKAIRQEDQH 260 Score = 50.8 bits (119), Expect = 0.002 Identities = 67/252 (26%), Positives = 104/252 (40%), Gaps = 13/252 (5%) Frame = +1 Query: 8059 QEQENCKYVFTSMIKVFTFDVYALLNPGANLSYLIPYVANHFEIVPEKLCEPFYISTPVG 8238 +E + V V + L + GA S++ ++ E+L P + TP G Sbjct: 389 EEAQAAPEVVLGTFPVNSIPATVLFDSGAMHSFIYKKFVGMHGLIREELSTPMRVHTP-G 447 Query: 8239 ESILAERVYHDCHVSTNHNMTMADLVELYIVEFDVILGMD*LHALHALYVSIDCIK*VFK 8418 S + + + + +A+L+ L + DVILGMD L + IDC Sbjct: 448 NSSTSVQFSPSVTIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGV---IDCAN--CT 502 Query: 8419 FQILNEPIIIVVQQCLRVLFYLIPYGEEVSPKLVYLSLSRANDLSVEVP----------- 8565 ++NE VV + L VSPK +SL N + VE+P Sbjct: 503 VTLINEKGETVVYKSL------------VSPKQG-VSL---NQIEVEIPVVTEEKNSRKL 546 Query: 8566 -SLQLVCIVGK-FLDDLFGVPPDREIDFGIQNIPDTRPISIP*YIMAPXXXXXXXXXXXD 8739 + +VC + F +DL +PP REI+F I P T PI Y MA + Sbjct: 547 EEIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDE 606 Query: 8740 HVXXXXXXXXXXXXGSPRLVFKEEK 8814 + G+P ++F E+K Sbjct: 607 QLQKGYIRPSTSPWGAP-VIFVEKK 630 Score = 47.6 bits (111), Expect(3) = 0.0 Identities = 39/137 (28%), Positives = 62/137 (44%), Gaps = 1/137 (0%) Frame = -3 Query: 52299 SRQDQEASPNVITGILLLFS*SVYALIDPGSTL*FL-SAFIASRIGIESELIEPFEVATP 52123 S ++ +A+P V+ G + S L D G+ F+ F+ I EL P V TP Sbjct: 387 STEEAQAAPEVVLGTFPVNSIPATVLFDSGAMHSFIYKKFVGMHGLIREELSTPMRVHTP 446 Query: 52122 LGDSVIATRVYKNCSVVIYSRRTIADLIELTIIEFDIIMGMDWLAACYANVDYRGKIVRF 51943 G+S + + + ++ I +A+LI L + D+I+GMDWL +D V Sbjct: 447 -GNSSTSVQFSPSVTIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANCTV-- 503 Query: 51942 QFLGEPIIEWKGSTISRK 51889 +I KG T+ K Sbjct: 504 -----TLINEKGETVVYK 516 Score = 45.3 bits (105), Expect = 0.081 Identities = 34/125 (27%), Positives = 55/125 (43%) Frame = +1 Query: 6901 SRVSEFLRMNTSSFTGTNTM*NLKNIVEEFKRIFEVIHVVDYERVELV*HELKCVAITWL 7080 S++ EFLR+ +F+ T + + ++ ++ D E+V H+L+ A W Sbjct: 90 SKLPEFLRVRPPTFSSTTNPMKANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWW 149 Query: 7081 DQWKEGRANNATHPWWACFEKAFFERFFPRELNEEKVREFLTFKLDCINVHEYGLKFPKL 7260 D R T WA F + F + + +K REF V EY +F +L Sbjct: 150 DNHMTTRP-PGTEVTWAEFCRNFRKAQVLDGVVAQKKREFRALHQGNRTVTEYLHEFDRL 208 Query: 7261 SRYAP 7275 +RYAP Sbjct: 209 ARYAP 213 >dbj|BAA81778.1| (AP000364) Similar to Transposon MAGGY gag and pol gene homologues. (L35053) [Oryza sativa] Length = 1491 Score = 597 bits (1523), Expect = e-168 Identities = 292/468 (62%), Positives = 357/468 (75%), Gaps = 3/468 (0%) Frame = -2 Query: 51787 QSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRD 51608 + + VV FPDVF IEF ID++ T PI PYRM EL+ELK+Q+R+ Sbjct: 690 KGIPVVQRFPDVFPEDLPGMPPDRDIEFLIDLIPGTAPISKRPYRMPVNELEELKKQIRE 749 Query: 51607 LLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQG 51428 L EKGF+RPS+SPWGAPVLFV+KKDGS++M ++Y+ LN+VT+KN+YPLPRIDDLFDQL+G Sbjct: 750 LQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKG 809 Query: 51427 AKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFK 51248 AK FSKIDLRS YH++++R DIPKTAF TRYG Y+F VLSFG+TNA A FM+LMN+VF Sbjct: 810 AKVFSKIDLRSGYHQLKIRTGDIPKTAFSTRYGLYEFTVLSFGLTNAPAYFMNLMNKVFM 869 Query: 51247 PFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHI 51068 +LD FV+VF+DDIL+YSR EEEHA+HLR VL L+ KLYA FSKCEFWL +AFLGH+ Sbjct: 870 DYLDKFVVVFIDDILIYSRDEEEHAEHLRLVLEKLRKHKLYAKFSKCEFWLKEVAFLGHV 929 Query: 51067 IGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAA 50888 I A G+ VD K+EAV W P + TE+RSFL LA YYRRF E + I+ P+ +L +K Sbjct: 930 ISAGGVAVDPAKVEAVTEWKAPKSVTEIRSFLGLAGYYRRFTEGLSKIARPMRQLLKKEK 989 Query: 50887 KF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYAS 50708 KF W+ C+ SF LK+KLT AP L LP+ +VIYCD S GLG VLMQ GKV+AYAS Sbjct: 990 KFVWSEQCQESFEQLKEKLTSAPILVLPDIRKDFVIYCDASRQGLGGVLMQDGKVVAYAS 1049 Query: 50707 RQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRR 50528 R+LR HE NYPTHDL+L VVHALKIWRHYL G H DIYTDHKSL+YIF Q +L LRQRR Sbjct: 1050 RKLRPHEENYPTHDLELAAVVHALKIWRHYLIGNHCDIYTDHKSLKYIFTQSDLNLRQRR 1109 Query: 50527 WLELLKDYDVDILYHLGKANVVVDALSRKSMGS---LTDVQPEMREMVRDI 50384 WLEL+KDYD+++ YHLGKANVV DALSRKS + + PE++E + + Sbjct: 1110 WLELIKDYDLEVHYHLGKANVVADALSRKSHCNHLRTEGMAPELKEEIAQL 1160 Score = 252 bits (638), Expect(2) = 4e-069 Identities = 122/266 (45%), Positives = 167/266 (61%) Frame = -3 Query: 50130 EEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEI 49951 E H + YS++PGSTKMY DL+ YWW MK+D+AE+VA C CQ VK E+Q+ Sbjct: 1165 EAHESAYSLHPGSTKMYQDLKDGYWWPNMKRDVAEYVALCDVCQKVKAEYQRPA------ 1218 Query: 49950 EIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVRE 49771 DRLTK+A F+PV+T YS+ V LY+ Sbjct: 1219 --------------------------------DRLTKTARFIPVKTNYSSAKLVELYMTR 1246 Query: 49770 IVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDML 49591 IV LHG+P IISDRG QFT++FW + LG+ + ST +HPQTDG++ERT Q LEDML Sbjct: 1247 IVCLHGIPKRIISDRGTQFTSHFWEKVHEALGSYLAFSTAYHPQTDGQTERTNQVLEDML 1306 Query: 49590 RASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVGETKLIGP 49411 RA +DF W+ LP EF+YNN + ++++M+P EAL+GR+CR+P+ W + GE + GP Sbjct: 1307 RACALDFSKDWERCLPYTEFSYNNSFQANLKMSPNEALFGRRCRTPLMWSETGERAVFGP 1366 Query: 49410 DMIQQVVDKVKLIQERLLASQSR*KS 49333 D+IQ+ +KV+LI++RL +QSR KS Sbjct: 1367 DIIQEAEEKVRLIRDRLKVAQSRQKS 1392 Score = 160 bits (400), Expect = 2e-036 Identities = 93/290 (32%), Positives = 156/290 (53%), Gaps = 1/290 (0%) Frame = +2 Query: 10190 KSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQRLGGLAKNI 10369 ++H + +S GS KMY+ L++ Y +K+D+ ++VA+ Q+VK E+QR Sbjct: 1165 EAHESAYSLHPGSTKMYQDLKDGYWWPNMKRDVAEYVALCDVCQKVKAEYQRPA------ 1218 Query: 10370 ELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQK 10549 DRLTK++ F+ V + + +LY+ + Sbjct: 1219 --------------------------------DRLTKTARFIPVKTNYSSAKLVELYMTR 1246 Query: 10550 VERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILK-EVEKQCTIKTLEYML 10726 + LHG IIS+R FT+ W+ ++ GS L + + + + + T + LE ML Sbjct: 1247 IVCLHGIPKRIISDRGTQFTSHFWEKVHEALGSYLAFSTAYHPQTDGQTERTNQVLEDML 1306 Query: 10727 RACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGRRGRYHIRLFKVGESGLIGL 10906 RAC +DF +W+ +P E+SYNNS+ ++++M+P EAL+GRR R + + GE + G Sbjct: 1307 RACALDFSKDWERCLPYTEFSYNNSFQANLKMSPNEALFGRRCRTPLMWSETGERAVFGP 1366 Query: 10907 DVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVDDWVYLKV*P*R 11059 D++ + +K+++I++R+ QS +K TD RRR LE + D+VYLKV P R Sbjct: 1367 DIIQEAEEKVRLIRDRLKVAQSRQKSYTDTRRRNLEFKEGDYVYLKVSPMR 1417 Score = 121 bits (300), Expect(5) = 4e-083 Identities = 69/175 (39%), Positives = 96/175 (54%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA FM LM++VF +LD F YS ++E+HA LR+VL+ LR + KFSK Sbjct: 856 APAYFMNLMNKVFMDYLDKFVVVFIDDILIYSRDEEEHAEHLRLVLEKLRKHKLYAKFSK 915 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF LK V FLGH+IS G+ VD K+E+ + P I SFL LA YYRRF + S Sbjct: 916 CEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWKAPKSVTEIRSFLGLAGYYRRFTEGLS 975 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 I+ P+ ++ + +F SE C+ F +L ++ F++YC AS Sbjct: 976 KIARPMRQLLKKEKKFVWSEQCQESFEQLKEKLTSAPILVLPDIRKDFVIYCDAS 1030 Score = 92.8 bits (227), Expect(5) = 4e-083 Identities = 47/103 (45%), Positives = 61/103 (58%) Frame = +2 Query: 8747 DKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXX 8926 +K F+ + SPWGA VLF++KK +R+C+DY N VT K KYPL RI Sbjct: 752 EKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAK 811 Query: 8927 XXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+LRSG H++K+R D+PKT F RYG Y F V+ LT Sbjct: 812 VFSKIDLRSGYHQLKIRTGDIPKTAFSTRYGLYEFTVLSFGLT 854 Score = 76.1 bits (184), Expect = 4e-011 Identities = 72/324 (22%), Positives = 121/324 (37%), Gaps = 6/324 (1%) Frame = -1 Query: 1010 VEFVTYQFKGNAKMWWRSHVGCQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFFSLE 831 V F Q +G A WW ++ + A W F++ F + ++P + +++EF L Sbjct: 278 VIFEANQLEGPAGDWWDTYKEAREEDAGEPNWEEFTTAFRDNFVPAAVMRMKKNEFRRLR 337 Query: 830 QGRMSLTAYEAKFRASSRYATQLCFSPKERISRFVKGLR*ELRISALQVAATTKSFQEVV 651 QG ++ Y +F +RYAT +E+I +F++GL ELR + SFQ ++ Sbjct: 338 QGNTTVQEYLNRFTQLARYATGDLADEEEKIDKFIEGLNDELR--GPMIGQDHDSFQSLI 395 Query: 650 DFVIEVEGVKQDDFTMASTSNRFHKGGEFNXXXXXXXXXXXYPVRPIQFSLQAVAGGPP* 471 + V+ +E ++ NR + RP V P Sbjct: 396 NKVVRLENDRK-----VVEHNRKRRLAMNRPPQPRHKGTTSSVWRP-----TVVTTNRPT 445 Query: 470 TSQHFSKFGGYLQISSFSQRP------MIKSRECYGCGKTGHIKRYCPKQSYRPPIVXXX 309 S +F + + I + + P ++ C+ CG+ GH CP + P Sbjct: 446 ASSNFHRL---ITIQNRAPAPNQAATGSVRLGSCFNCGEYGHFANKCPHPNKTP------ 496 Query: 308 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATTAEHGRGNVQTGYRAHCYAFPGRFEAET 129 TT GRG V H A EA+ Sbjct: 497 -ICTGANATAIHGTATPAAGRGLFGTPQTNRTTTGFGRGQVN-----HVRA----EEAQE 546 Query: 128 SNVVITGNLLVCDWMASILFDPGSTFSYVS 39 V+ G + +LFD G++ S++S Sbjct: 547 DQGVLMGMFSINSTPVKVLFDSGASHSFIS 576 Score = 76.1 bits (184), Expect(5) = 4e-083 Identities = 34/59 (57%), Positives = 47/59 (79%) Frame = +3 Query: 9588 NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL*YVFT 9764 +GKV+ Y S+ L +E+NYPTHD+ELA++V +LKIW H+L G DI+TD+KSL Y+FT Sbjct: 1041 DGKVVAYASRKLRPHEENYPTHDLELAAVVHALKIWRHYLIGNHCDIYTDHKSLKYIFT 1099 Score = 62.8 bits (150), Expect = 4e-007 Identities = 34/128 (26%), Positives = 70/128 (54%), Gaps = 6/128 (4%) Frame = -1 Query: 53309 GSRPQDDPQKFICQ------MQRTLRISKASETESVELATYRLRDVDINWYESWELSRGE 53148 G +P+ DP+ + +++ L + + E + V +L +W+++++ +R E Sbjct: 243 GKKPKPDPEATTSEPWGLRVIEKKLTLVRVREADKVIFEANQLEGPAGDWWDTYKEAREE 302 Query: 53147 GAPPMIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYAPTIVA 52968 A W+EF AF+ +F+ + R + + F LR+ +V+EY F L RYA +A Sbjct: 303 DAGEPNWEEFTTAFRDNFVPAAVMRMKKNEFRRLRQGNTTVQEYLNRFTQLARYATGDLA 362 Query: 52967 DMADRVHRYVMGLD 52926 D +++ +++ GL+ Sbjct: 363 DEEEKIDKFIEGLN 376 Score = 55.8 bits (132), Expect(5) = 4e-083 Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 10/219 (4%) Frame = +1 Query: 8023 GEANHLYGITNCQEQENCKYVFTSMIKVFTFDVYALLNPGANLSYLIPYVANHFEIVPEK 8202 G+ NH+ +E + + V M + + V L + GA+ S++ V+ + K Sbjct: 534 GQVNHV----RAEEAQEDQGVLMGMFSINSTPVKVLFDSGASHSFISLKVSQQHNLTRVK 589 Query: 8203 LCEPFYISTPVGESILAERVYHDCHVSTNHNMTMADLVELYIVEFDVILGMD*LHALHAL 8382 L +P + +P GE I + D + + ++L+ L DVILGMD L + Sbjct: 590 LRQPMLVHSPGGE-IAVDTACIDVPIRLRDVVFPSNLMVLMPQTLDVILGMDWLTKHRGV 648 Query: 8383 YVSIDCIK*VFKFQILNEPIIIVVQQCLRVLFYLIPYGEEV------SPKLVYLSLSRAN 8544 IDC + R + P+G ++ P+L RA Sbjct: 649 ---IDCRR--------------------REVTLTTPWGSDMRATMDQDPRLT----ERAG 681 Query: 8545 DLSVEVPSLQLVCIVGKFLD----DLFGVPPDREIDFGIQNIPDTRPIS 8679 + +P + + +V +F D DL G+PPDR+I+F I IP T PIS Sbjct: 682 GIFTMLPQ-KGIPVVQRFPDVFPEDLPGMPPDRDIEFLIDLIPGTAPIS 729 Score = 54.3 bits (128), Expect(5) = 4e-083 Identities = 30/51 (58%), Positives = 37/51 (71%), Gaps = 6/51 (11%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKE------KEELAK 9928 NL+QRRWLEL KDYD+ + YH GKANVV +L R S C + E KEE+A+ Sbjct: 1104 NLRQRRWLELIKDYDLEVHYHLGKANVVADALSRKS-HCNHLRTEGMAPELKEEIAQ 1159 Score = 51.2 bits (120), Expect = 0.001 Identities = 31/103 (30%), Positives = 50/103 (48%) Frame = +1 Query: 7006 VIHVVDYERVELV*HELKCVAITWLDQWKEGRANNATHPWWACFEKAFFERFFPRELNEE 7185 ++ V + ++V ++L+ A W D +KE R +A P W F AF + F P + Sbjct: 269 LVRVREADKVIFEANQLEGPAGDWWDTYKEAREEDAGEPNWEEFTTAFRDNFVPAAVMRM 328 Query: 7186 KVREFLTFKLDCINVHEYGLKFPKLSRYAP*MVNDMERRVSFF 7314 K EF + V EY +F +L+RYA + D E ++ F Sbjct: 329 KKNEFRRLRQGNTTVQEYLNRFTQLARYATGDLADEEEKIDKF 371 Score = 37.9 bits (86), Expect(2) = 4e-069 Identities = 16/27 (59%), Positives = 23/27 (84%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMK 49260 +S+ D RR +LEF+ GD+V+LKVSPM+ Sbjct: 1391 KSYTDTRRRNLEFKEGDYVYLKVSPMR 1417 >emb|CAB78181.1| (AL161517) putative reverse-transcriptase-like protein [Arabidopsis thaliana] Length = 1240 Score = 590 bits (1504), Expect(2) = e-168 Identities = 304/546 (55%), Positives = 381/546 (69%), Gaps = 4/546 (0%) Frame = -2 Query: 51880 ISYLKARKMVRKGYIYHLVRVHDINAEAPTLQS-VLVVDEFPDVFXXXXXXXXXXXKIEF 51704 IS ++A KM+ KG +LV + + S + VV EF DVF F Sbjct: 423 ISAVQAEKMIEKGCEAYLVTISMPESVGQVAVSDIRVVQEFQDVFQSLQGLPPSQSD-PF 481 Query: 51703 TIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSL 51524 TI++ T P+ PYRMAPAE+ ELK+QL+DLL KGFIRPSTSPWGAPVLFV+KKDGS Sbjct: 482 TIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKGFIRPSTSPWGAPVLFVKKKDGSF 541 Query: 51523 QMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAF 51344 ++ I+Y++LN+VTVKNRYPLPRID+L DQL+GA CFSKIDL S YH++ + EAD+ KTAF Sbjct: 542 RLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAF 601 Query: 51343 WTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHL 51164 TRYGH++F V+ FG+TNA AVFM LMN VF+ FLD FVI+F+DDILVYS+S EE HL Sbjct: 602 RTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHL 661 Query: 51163 RTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEV 50984 R V+ L+ QKL+A SKC FW + FLGHI+ A+G+ VD +KIEA++ W RPT TE+ Sbjct: 662 RRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEI 721 Query: 50983 RSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLP 50804 RSFL A YYRRFV+ FA ++ P+ +LT K F W+ CE F LK+ LT P L LP Sbjct: 722 RSFLGWAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALP 781 Query: 50803 EGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWR 50624 E Y++Y D S VGLGCVLMQHGKVIAYASRQL KHE NYPTHDL++ V+ ALKIWR Sbjct: 782 EHGQPYMVYTDASRVGLGCVLMQHGKVIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWR 841 Query: 50623 HYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 YLYG V ++TDHKSL+YIF Q EL LRQRRW+EL+ DYD++I YH GKANVVVDALSR Sbjct: 842 SYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPGKANVVVDALSR 901 Query: 50443 KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQYKDP 50264 K +G+ E+ + + +L +C E G+ V ++ ++ V+ Q KD Sbjct: 902 KRVGAALGQSVEVL-----VSEIGALRLCAVAREPLGLE--AVDRADLLTRVRLAQKKDE 954 Query: 50263 IL---AQYRD 50243 L YRD Sbjct: 955 GLRATKMYRD 964 Score = 138 bits (345), Expect = 6e-030 Identities = 71/145 (48%), Positives = 94/145 (63%), Gaps = 2/145 (1%) Frame = -3 Query: 50094 STKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINM 49915 +TKMY DL+ Y W GMK D+A +VA+C CQ VK EHQ GG+LQ + IP WKW+ I M Sbjct: 958 ATKMYRDLKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITM 1017 Query: 49914 DFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSI- 49738 D + GL ++ K D+IWVI+DRLTKSAHFL +R T A + +V EIV+LHGVP ++ Sbjct: 1018 DLVVGLRVSRTK-DAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMK 1076 Query: 49737 -ISDRGAQFTTNFWRSFQKGLGTQVNL 49660 DR + R + +G +V L Sbjct: 1077 EAQDRQRSYADKRRRELEFEVGDRVYL 1103 Score = 121 bits (300), Expect = 1e-024 Identities = 61/152 (40%), Positives = 92/152 (60%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 RS+AD RR +LEF++GD V+LK++ ++G R + KLSPRY+GP++IV + VAY L+ Sbjct: 1083 RSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFKIVERVEPVAYRLE 1142 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LP + H VFHVSMLRKC+ + + E +P+ +L+R+++ LR K Sbjct: 1143 LPDVMRAFHKVFHVSMLRKCLHKDDEALAKIPEDLQPNMTLEARPVRVLERRIKELRQKK 1202 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + +KVLW + E T E E MK ++ F Sbjct: 1203 IPLIKVLWDCDGVTEETWEPEARMKARFKKWF 1234 Score = 114 bits (283), Expect(4) = 3e-071 Identities = 70/175 (40%), Positives = 93/175 (53%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA FM LM+ VF+ FLD F YS + E+ LR V++ LR ++ K SK Sbjct: 620 APAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSK 679 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + + FLGHI+S EG+ VD EKIE+ +PRP I SFL A YYRRFV F+ Sbjct: 680 CSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFA 739 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 S++ P+TK+T V F S+ CE F L + ++VY AS Sbjct: 740 SMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDAS 794 Score = 97.1 bits (238), Expect = 2e-017 Identities = 49/112 (43%), Positives = 73/112 (64%) Frame = +2 Query: 10232 KMYRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDF 10411 KMYR L+ Y G+K D+ +VA Q VK EHQ LGG+ +++ +P WKW+ I MD Sbjct: 960 KMYRDLKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDL 1019 Query: 10412 IKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHG 10567 + + SR + ++I+VIVDRLTKS+HFL + T+ A AK ++ ++ +LHG Sbjct: 1020 VVGLRVSRTK-DAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHG 1070 Score = 87.8 bits (214), Expect(4) = 3e-071 Identities = 46/105 (43%), Positives = 60/105 (56%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + K FI + SPWGA VLF++KK R+CIDY + N VT K +YPL RI Sbjct: 514 LLGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRG 573 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+L SG H++ + E DV KT F RYGH+ F+V+ LT Sbjct: 574 ATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLT 618 Score = 81.1 bits (197), Expect(4) = 3e-071 Identities = 38/65 (58%), Positives = 53/65 (81%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*-NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L +GKVI Y S+ LM +E NYPTHD+E+A+++F+LKIW +LYG +V +FTD+KS Sbjct: 798 LGCVLMQHGKVIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKS 857 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 858 LKYIFT 863 Score = 56.2 bits (133), Expect(4) = 3e-071 Identities = 24/38 (63%), Positives = 29/38 (76%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMG 9889 NL+QRRW+EL DYD+ I YHPGKANVV +L R +G Sbjct: 868 NLRQRRWMELVADYDLEIAYHPGKANVVVDALSRKRVG 905 Score = 54.7 bits (129), Expect(3) = 2e-013 Identities = 26/56 (46%), Positives = 37/56 (65%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFL 11220 ++G R +++ KL PR++G +KI +RV Y LELP + A H VFH+SML K L Sbjct: 1108 LRGPNRSISETKLSPRYMGPFKIVERVEPVAYRLELPDVMRAFHKVFHVSMLRKCL 1163 Score = 39.1 bits (89), Expect(3) = 2e-013 Identities = 17/46 (36%), Positives = 28/46 (59%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFE 11435 + + ++++LR KK+ +KVLW V E T+E E M+ R+ FE Sbjct: 1190 VLERRIKELRQKKIPLIKVLWDCDGVTEETWEPEARMKARFKKWFE 1235 Score = 37.1 bits (84), Expect(2) = 1.7 Identities = 23/77 (29%), Positives = 44/77 (56%), Gaps = 1/77 (1%) Frame = +3 Query: 42477 SLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKIS-SKTIHRGRILK*DGPFDV 42653 ++++A R ++ AD+ LEF+VG+ V +K+ S S+T R + GPF + Sbjct: 1074 NMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYM---GPFKI 1130 Query: 42654 IERAGEVSCMLKLSEILK 42707 +ER V+ L+L ++++ Sbjct: 1131 VERVEPVAYRLELPDVMR 1148 Score = 30.5 bits (67), Expect(2) = e-168 Identities = 16/46 (34%), Positives = 26/46 (55%), Gaps = 1/46 (2%) Frame = -3 Query: 52089 KNCSVVIYSRRTIADLIELTIIEFDIIMGMDWLAACYANVD-YRGKI 51952 K + I ADLI + +D+I+GMDWL ++D +RG++ Sbjct: 354 KGVDIQIAGESMPADLIISPVELYDVILGMDWLDYYRVHLDWHRGRV 400 Score = 30.1 bits (66), Expect(3) = 2e-013 Identities = 20/66 (30%), Positives = 33/66 (49%) Frame = +2 Query: 10850 RGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVDD 11029 + + + + K + ++ V +I+ KL + M Q ++ D RRR LE EV D Sbjct: 1041 KSAHFLAIRKTDGAAVLAKKFVSEIV-KLHGVPLNMKEAQDRQRSYADKRRRELEFEVGD 1099 Query: 11030 WVYLKV 11047 VYLK+ Sbjct: 1100 RVYLKM 1105 Score = 22.3 bits (46), Expect(2) = 1.7 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%) Frame = +1 Query: 42709 FHPTFHVSFL-KPFHEDVE 42762 FH FHVS L K H+D E Sbjct: 1150 FHKVFHVSMLRKCLHKDDE 1168 >emb|CAB40024.1| (AL049523) putative reverse-transcriptase-like protein [Arabidopsis thaliana] Length = 1240 Score = 590 bits (1504), Expect(2) = e-168 Identities = 304/546 (55%), Positives = 381/546 (69%), Gaps = 4/546 (0%) Frame = -2 Query: 51880 ISYLKARKMVRKGYIYHLVRVHDINAEAPTLQS-VLVVDEFPDVFXXXXXXXXXXXKIEF 51704 IS ++A KM+ KG +LV + + S + VV EF DVF F Sbjct: 423 ISAVQAEKMIEKGCEAYLVTISMPESVGQVAVSDIRVVQEFQDVFQSLQGLPPSQSD-PF 481 Query: 51703 TIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSL 51524 TI++ T P+ PYRMAPAE+ ELK+QL+DLL KGFIRPSTSPWGAPVLFV+KKDGS Sbjct: 482 TIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKGFIRPSTSPWGAPVLFVKKKDGSF 541 Query: 51523 QMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAF 51344 ++ I+Y++LN+VTVKNRYPLPRID+L DQL+GA CFSKIDL S YH++ + EAD+ KTAF Sbjct: 542 RLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAF 601 Query: 51343 WTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHL 51164 TRYGH++F V+ FG+TNA AVFM LMN VF+ FLD FVI+F+DDILVYS+S EE HL Sbjct: 602 RTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHL 661 Query: 51163 RTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEV 50984 R V+ L+ QKL+A SKC FW + FLGHI+ A+G+ VD +KIEA++ W RPT TE+ Sbjct: 662 RRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEI 721 Query: 50983 RSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLP 50804 RSFL A YYRRFV+ FA ++ P+ +LT K F W+ CE F LK+ LT P L LP Sbjct: 722 RSFLGWAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALP 781 Query: 50803 EGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWR 50624 E Y++Y D S VGLGCVLMQHGKVIAYASRQL KHE NYPTHDL++ V+ ALKIWR Sbjct: 782 EHGQPYMVYTDASRVGLGCVLMQHGKVIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWR 841 Query: 50623 HYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 YLYG V ++TDHKSL+YIF Q EL LRQRRW+EL+ DYD++I YH GKANVVVDALSR Sbjct: 842 SYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPGKANVVVDALSR 901 Query: 50443 KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQYKDP 50264 K +G+ E+ + + +L +C E G+ V ++ ++ V+ Q KD Sbjct: 902 KRVGAALGQSVEVL-----VSEIGALRLCAVAREPLGLE--AVDRADLLTRVRLAQKKDE 954 Query: 50263 IL---AQYRD 50243 L YRD Sbjct: 955 GLRATKMYRD 964 Score = 138 bits (345), Expect = 6e-030 Identities = 71/145 (48%), Positives = 94/145 (63%), Gaps = 2/145 (1%) Frame = -3 Query: 50094 STKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINM 49915 +TKMY DL+ Y W GMK D+A +VA+C CQ VK EHQ GG+LQ + IP WKW+ I M Sbjct: 958 ATKMYRDLKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITM 1017 Query: 49914 DFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSI- 49738 D + GL ++ K D+IWVI+DRLTKSAHFL +R T A + +V EIV+LHGVP ++ Sbjct: 1018 DLVVGLRVSRTK-DAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVPLNMK 1076 Query: 49737 -ISDRGAQFTTNFWRSFQKGLGTQVNL 49660 DR + R + +G +V L Sbjct: 1077 EAQDRQRSYADKRRRELEFEVGDRVYL 1103 Score = 121 bits (300), Expect = 1e-024 Identities = 61/152 (40%), Positives = 92/152 (60%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 RS+AD RR +LEF++GD V+LK++ ++G R + KLSPRY+GP++IV + VAY L+ Sbjct: 1083 RSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFKIVERVEPVAYRLE 1142 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LP + H VFHVSMLRKC+ + + E +P+ +L+R+++ LR K Sbjct: 1143 LPDVMRAFHKVFHVSMLRKCLHKDDEALAKIPEDLQPNMTLEARPVRVLERRIKELRQKK 1202 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + +KVLW + E T E E MK ++ F Sbjct: 1203 IPLIKVLWDCDGVTEETWEPEARMKARFKKWF 1234 Score = 114 bits (283), Expect(4) = 3e-071 Identities = 70/175 (40%), Positives = 93/175 (53%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA FM LM+ VF+ FLD F YS + E+ LR V++ LR ++ K SK Sbjct: 620 APAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHLRRVMEKLREQKLFAKLSK 679 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + + FLGHI+S EG+ VD EKIE+ +PRP I SFL A YYRRFV F+ Sbjct: 680 CSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGWAGYYRRFVKGFA 739 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 S++ P+TK+T V F S+ CE F L + ++VY AS Sbjct: 740 SMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALPEHGQPYMVYTDAS 794 Score = 97.1 bits (238), Expect = 2e-017 Identities = 49/112 (43%), Positives = 73/112 (64%) Frame = +2 Query: 10232 KMYRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDF 10411 KMYR L+ Y G+K D+ +VA Q VK EHQ LGG+ +++ +P WKW+ I MD Sbjct: 960 KMYRDLKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDL 1019 Query: 10412 IKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHG 10567 + + SR + ++I+VIVDRLTKS+HFL + T+ A AK ++ ++ +LHG Sbjct: 1020 VVGLRVSRTK-DAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHG 1070 Score = 87.8 bits (214), Expect(4) = 3e-071 Identities = 46/105 (43%), Positives = 60/105 (56%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + K FI + SPWGA VLF++KK R+CIDY + N VT K +YPL RI Sbjct: 514 LLGKGFIRPSTSPWGAPVLFVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRG 573 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+L SG H++ + E DV KT F RYGH+ F+V+ LT Sbjct: 574 ATCFSKIDLTSGYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLT 618 Score = 81.1 bits (197), Expect(4) = 3e-071 Identities = 38/65 (58%), Positives = 53/65 (81%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*-NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L +GKVI Y S+ LM +E NYPTHD+E+A+++F+LKIW +LYG +V +FTD+KS Sbjct: 798 LGCVLMQHGKVIAYASRQLMKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKS 857 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 858 LKYIFT 863 Score = 56.2 bits (133), Expect(4) = 3e-071 Identities = 24/38 (63%), Positives = 29/38 (76%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMG 9889 NL+QRRW+EL DYD+ I YHPGKANVV +L R +G Sbjct: 868 NLRQRRWMELVADYDLEIAYHPGKANVVVDALSRKRVG 905 Score = 54.7 bits (129), Expect(3) = 2e-013 Identities = 26/56 (46%), Positives = 37/56 (65%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFL 11220 ++G R +++ KL PR++G +KI +RV Y LELP + A H VFH+SML K L Sbjct: 1108 LRGPNRSISETKLSPRYMGPFKIVERVEPVAYRLELPDVMRAFHKVFHVSMLRKCL 1163 Score = 39.1 bits (89), Expect(3) = 2e-013 Identities = 17/46 (36%), Positives = 28/46 (59%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFE 11435 + + ++++LR KK+ +KVLW V E T+E E M+ R+ FE Sbjct: 1190 VLERRIKELRQKKIPLIKVLWDCDGVTEETWEPEARMKARFKKWFE 1235 Score = 37.1 bits (84), Expect(2) = 1.7 Identities = 23/77 (29%), Positives = 44/77 (56%), Gaps = 1/77 (1%) Frame = +3 Query: 42477 SLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKIS-SKTIHRGRILK*DGPFDV 42653 ++++A R ++ AD+ LEF+VG+ V +K+ S S+T R + GPF + Sbjct: 1074 NMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYM---GPFKI 1130 Query: 42654 IERAGEVSCMLKLSEILK 42707 +ER V+ L+L ++++ Sbjct: 1131 VERVEPVAYRLELPDVMR 1148 Score = 30.5 bits (67), Expect(2) = e-168 Identities = 16/46 (34%), Positives = 26/46 (55%), Gaps = 1/46 (2%) Frame = -3 Query: 52089 KNCSVVIYSRRTIADLIELTIIEFDIIMGMDWLAACYANVD-YRGKI 51952 K + I ADLI + +D+I+GMDWL ++D +RG++ Sbjct: 354 KGVDIQIAGESMPADLIISPVELYDVILGMDWLDYYRVHLDWHRGRV 400 Score = 30.1 bits (66), Expect(3) = 2e-013 Identities = 20/66 (30%), Positives = 33/66 (49%) Frame = +2 Query: 10850 RGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVDD 11029 + + + + K + ++ V +I+ KL + M Q ++ D RRR LE EV D Sbjct: 1041 KSAHFLAIRKTDGAAVLAKKFVSEIV-KLHGVPLNMKEAQDRQRSYADKRRRELEFEVGD 1099 Query: 11030 WVYLKV 11047 VYLK+ Sbjct: 1100 RVYLKM 1105 Score = 22.3 bits (46), Expect(2) = 1.7 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%) Frame = +1 Query: 42709 FHPTFHVSFL-KPFHEDVE 42762 FH FHVS L K H+D E Sbjct: 1150 FHKVFHVSMLRKCLHKDDE 1168 >emb|CAB46045.1| (Z97342) retrotransposon like protein [Arabidopsis thaliana] Length = 687 Score = 304 bits (771), Expect(3) = e-167 Identities = 144/273 (52%), Positives = 197/273 (71%), Gaps = 1/273 (0%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ +++ E H + +SI+PGS KMY DL+ Y W GMKKD+A +VA K EHQ Sbjct: 251 LKEEILKEAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVA--------KEEHQVP 302 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPR-TQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 G+LQ + IP WKW+ I MDF+TGLP + K +++WV++DRLTKSAHF+ + +AE Sbjct: 303 SGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDAAEI 362 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 Y+ EIVRLHG+P SI+SDR +FT+ FW+ FQK LGT+VNLST +HPQTDG+SERT Sbjct: 363 IAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAYHPQTDGQSERT 422 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDV 49435 IQTLEDMLRA ++D+ G+W+ +L L+EFAYNN + +SI M+PYEALYGR R+P+ W V Sbjct: 423 IQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRAGRTPLCWTPV 482 Query: 49434 GETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 GE +L GP ++ + K+K ++ +L +Q R KS Sbjct: 483 GERRLFGPAVVDETTKKMKFLKIKLKEAQDRQKS 516 Score = 277 bits (700), Expect(5) = e-105 Identities = 155/423 (36%), Positives = 251/423 (58%), Gaps = 2/423 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 NL+QRRW++L DYD++I YHPGKAN V +L RL ++++ + V+ + L Sbjct: 128 NLRQRRWIKLVADYDLNIAYHPGKANQVVDALSRLR----TVVEAERNQVNLVNMMGTLH 183 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKY 10135 + + + + ++ L+S ++ ++D +N K + ++ +G + Sbjct: 184 LNALSKEVEPLGLRAANQADLLSRIRSAQERDEEIKGWAQNNKTE----YQSSNNGTIVV 239 Query: 10136 QERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSN 10315 R+C PN ++ I++++H + FS GS KMYR L+ Y G+KKD+ ++VA Sbjct: 240 NGRVCGPNDKALKEEILKEAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVA---- 295 Query: 10316 YQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*S-RRQHNSIFVIVDRLTKSSHF 10492 K EHQ G+ +N+ +P WKW+ I MDF+ + +HN+++V+VDRLTKS+HF Sbjct: 296 ----KEEHQVPSGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHF 351 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + +S + AE A+ YI ++ RLHG V I+S+R FT++ WK FQK G+++N + Sbjct: 352 MAISDKDAAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAY 411 Query: 10673 ILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGR 10849 + + + + TI+TLE MLRACV+D+ NW+ + L+E++YNNS+ +SI M+PYEALYGR Sbjct: 412 HPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGR 471 Query: 10850 RGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVDD 11029 GR + VGE L G VV + K+K ++ ++ Q +K + RR+ LE +V D Sbjct: 472 AGRTPLCWTPVGERRLFGPAVVDETTKKMKFLKIKLKEAQDRQKSYANKRRKELEFQVGD 531 Query: 11030 WVYLK 11044 VYLK Sbjct: 532 LVYLK 536 Score = 209 bits (527), Expect(3) = e-167 Identities = 111/220 (50%), Positives = 143/220 (64%) Frame = -2 Query: 50926 ISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGC 50747 ++ P+ +LT K F W+ CERSF LK LT AP L LPE + Y +Y D S VGLGC Sbjct: 1 MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGC 60 Query: 50746 VLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQY 50567 VL+Q G VIAYASRQLRKHE NYPT+DL++ VV ALKIWR YLYG V I+TDHKSL+Y Sbjct: 61 VLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKSLKY 120 Query: 50566 IFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMREMVRD 50387 IF Q EL LRQRRW++L+ DYD++I YH GKAN VVDALSR L V R V Sbjct: 121 IFTQPELNLRQRRWIKLVADYDLNIAYHPGKANQVVDALSR-----LRTVVEAERNQVNL 175 Query: 50386 IQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQYKD 50267 + + +L + + E + + ++ ++ ++ Q +D Sbjct: 176 VNMMGTLHLNALSKEVEPLGLRAANQADLLSRIRSAQERD 215 Score = 127 bits (316), Expect(3) = e-167 Identities = 62/152 (40%), Positives = 90/152 (58%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 +S+A+ RR +LEFQ+GD V+LK KG R + KL PRY+GPY+++ +G VAY+LD Sbjct: 515 KSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLRPRYVGPYKVIERVGAVAYKLD 574 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LP L+ H VFHVS LRKC+ + + E + E P+ ++D+ + R K Sbjct: 575 LPPKLDAFHNVFHVSQLRKCLSEQEESMEDVPPGLKENMTVEAWPVRIMDQMKKGTRGKS 634 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + +K+LW REE T E E +MK +P F Sbjct: 635 MDLLKILWNCGGREEYTWETETKMKANFPEWF 666 Score = 78.4 bits (190), Expect(5) = e-105 Identities = 38/65 (58%), Positives = 51/65 (78%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L G VI Y S+ L +EKNYPT+D+E+A++VF+LKIW +LYG +V IFTD+KS Sbjct: 58 LGCVLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKS 117 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 118 LKYIFT 123 Score = 69.1 bits (166), Expect(5) = e-105 Identities = 33/79 (41%), Positives = 50/79 (62%) Frame = +1 Query: 11047 LTMKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGD 11226 +T KG RF ++ KL PR++G YK+ +RVG Y+L+LP +L A H VFH+S L K L + Sbjct: 538 MTYKGAGRFTSRKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFHNVFHVSQLRKCLSE 597 Query: 11227 PSLIVPTKIVGIKDNLSYE 11283 + G+K+N++ E Sbjct: 598 QEESMEDVPPGLKENMTVE 616 Score = 28.2 bits (61), Expect(5) = e-105 Identities = 15/54 (27%), Positives = 24/54 (43%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFESIENSDEG 11459 I D + R K + +K+LW EE T+E E M+ + F+ + G Sbjct: 622 IMDQMKKGTRGKSMDLLKILWNCGGREEYTWETETKMKANFPEWFKEMGKDQLG 675 Score = 23.9 bits (50), Expect(5) = e-105 Identities = 15/54 (27%), Positives = 21/54 (38%) Frame = +1 Query: 9421 ISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 ++ P+T++T F SE CE F EL + VY AS Sbjct: 1 MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDAS 54 >emb|CAB80961.1| (AL161545) retrotransposon like protein [Arabidopsis thaliana] Length = 687 Score = 304 bits (771), Expect(3) = e-167 Identities = 144/273 (52%), Positives = 197/273 (71%), Gaps = 1/273 (0%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ +++ E H + +SI+PGS KMY DL+ Y W GMKKD+A +VA K EHQ Sbjct: 251 LKEEILKEAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVA--------KEEHQVP 302 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPR-TQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 G+LQ + IP WKW+ I MDF+TGLP + K +++WV++DRLTKSAHF+ + +AE Sbjct: 303 SGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDAAEI 362 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 Y+ EIVRLHG+P SI+SDR +FT+ FW+ FQK LGT+VNLST +HPQTDG+SERT Sbjct: 363 IAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAYHPQTDGQSERT 422 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDV 49435 IQTLEDMLRA ++D+ G+W+ +L L+EFAYNN + +SI M+PYEALYGR R+P+ W V Sbjct: 423 IQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGRAGRTPLCWTPV 482 Query: 49434 GETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 GE +L GP ++ + K+K ++ +L +Q R KS Sbjct: 483 GERRLFGPAVVDETTKKMKFLKIKLKEAQDRQKS 516 Score = 277 bits (700), Expect(5) = e-105 Identities = 155/423 (36%), Positives = 251/423 (58%), Gaps = 2/423 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 NL+QRRW++L DYD++I YHPGKAN V +L RL ++++ + V+ + L Sbjct: 128 NLRQRRWIKLVADYDLNIAYHPGKANQVVDALSRLR----TVVEAERNQVNLVNMMGTLH 183 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKY 10135 + + + + ++ L+S ++ ++D +N K + ++ +G + Sbjct: 184 LNALSKEVEPLGLRAANQADLLSRIRSAQERDEEIKGWAQNNKTE----YQSSNNGTIVV 239 Query: 10136 QERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSN 10315 R+C PN ++ I++++H + FS GS KMYR L+ Y G+KKD+ ++VA Sbjct: 240 NGRVCGPNDKALKEEILKEAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVA---- 295 Query: 10316 YQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*S-RRQHNSIFVIVDRLTKSSHF 10492 K EHQ G+ +N+ +P WKW+ I MDF+ + +HN+++V+VDRLTKS+HF Sbjct: 296 ----KEEHQVPSGMLQNLPIPEWKWDHIMMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHF 351 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + +S + AE A+ YI ++ RLHG V I+S+R FT++ WK FQK G+++N + Sbjct: 352 MAISDKDAAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKPFQKVLGTRVNLSTAY 411 Query: 10673 ILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGR 10849 + + + + TI+TLE MLRACV+D+ NW+ + L+E++YNNS+ +SI M+PYEALYGR Sbjct: 412 HPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLVEFAYNNSFQASIGMSPYEALYGR 471 Query: 10850 RGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVDD 11029 GR + VGE L G VV + K+K ++ ++ Q +K + RR+ LE +V D Sbjct: 472 AGRTPLCWTPVGERRLFGPAVVDETTKKMKFLKIKLKEAQDRQKSYANKRRKELEFQVGD 531 Query: 11030 WVYLK 11044 VYLK Sbjct: 532 LVYLK 536 Score = 209 bits (527), Expect(3) = e-167 Identities = 111/220 (50%), Positives = 143/220 (64%) Frame = -2 Query: 50926 ISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGC 50747 ++ P+ +LT K F W+ CERSF LK LT AP L LPE + Y +Y D S VGLGC Sbjct: 1 MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGC 60 Query: 50746 VLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQY 50567 VL+Q G VIAYASRQLRKHE NYPT+DL++ VV ALKIWR YLYG V I+TDHKSL+Y Sbjct: 61 VLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKSLKY 120 Query: 50566 IFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMREMVRD 50387 IF Q EL LRQRRW++L+ DYD++I YH GKAN VVDALSR L V R V Sbjct: 121 IFTQPELNLRQRRWIKLVADYDLNIAYHPGKANQVVDALSR-----LRTVVEAERNQVNL 175 Query: 50386 IQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQYKD 50267 + + +L + + E + + ++ ++ ++ Q +D Sbjct: 176 VNMMGTLHLNALSKEVEPLGLRAANQADLLSRIRSAQERD 215 Score = 127 bits (316), Expect(3) = e-167 Identities = 62/152 (40%), Positives = 90/152 (58%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 +S+A+ RR +LEFQ+GD V+LK KG R + KL PRY+GPY+++ +G VAY+LD Sbjct: 515 KSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLRPRYVGPYKVIERVGAVAYKLD 574 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LP L+ H VFHVS LRKC+ + + E + E P+ ++D+ + R K Sbjct: 575 LPPKLDAFHNVFHVSQLRKCLSEQEESMEDVPPGLKENMTVEAWPVRIMDQMKKGTRGKS 634 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + +K+LW REE T E E +MK +P F Sbjct: 635 MDLLKILWNCGGREEYTWETETKMKANFPEWF 666 Score = 78.4 bits (190), Expect(5) = e-105 Identities = 38/65 (58%), Positives = 51/65 (78%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L G VI Y S+ L +EKNYPT+D+E+A++VF+LKIW +LYG +V IFTD+KS Sbjct: 58 LGCVLIQKGSVIAYASRQLRKHEKNYPTNDLEMAAVVFALKIWRSYLYGAKVQIFTDHKS 117 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 118 LKYIFT 123 Score = 69.1 bits (166), Expect(5) = e-105 Identities = 33/79 (41%), Positives = 50/79 (62%) Frame = +1 Query: 11047 LTMKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGD 11226 +T KG RF ++ KL PR++G YK+ +RVG Y+L+LP +L A H VFH+S L K L + Sbjct: 538 MTYKGAGRFTSRKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFHNVFHVSQLRKCLSE 597 Query: 11227 PSLIVPTKIVGIKDNLSYE 11283 + G+K+N++ E Sbjct: 598 QEESMEDVPPGLKENMTVE 616 Score = 28.2 bits (61), Expect(5) = e-105 Identities = 15/54 (27%), Positives = 24/54 (43%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFESIENSDEG 11459 I D + R K + +K+LW EE T+E E M+ + F+ + G Sbjct: 622 IMDQMKKGTRGKSMDLLKILWNCGGREEYTWETETKMKANFPEWFKEMGKDQLG 675 Score = 23.9 bits (50), Expect(5) = e-105 Identities = 15/54 (27%), Positives = 21/54 (38%) Frame = +1 Query: 9421 ISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 ++ P+T++T F SE CE F EL + VY AS Sbjct: 1 MAQPMTQLTGKDTAFNWSEECERSFLELKAMLTNAPVLVLPEEGEPYTVYTDAS 54 >dbj|BAA89559.1| (AP001072) Similar to polyprotein. (AF061282) [Oryza sativa] Length = 1021 Score = 570 bits (1454), Expect(2) = e-167 Identities = 279/477 (58%), Positives = 352/477 (73%) Frame = -2 Query: 51790 LQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLR 51611 L+ + +V E+P+VF IEF ID+ L T PI PYRM EL E+K+Q+ Sbjct: 485 LEDIPIVREYPEVFPDDLTTMPPKRDIEFWIDLALGTAPIHKRPYRMGANELAEVKKQVD 544 Query: 51610 DLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQ 51431 + L+KG+IRPSTSPWGAPV+FV KKD + +M ++Y+ LN+VT+KN+YPLPRIDDLFDQL+ Sbjct: 545 EQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLK 604 Query: 51430 GAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVF 51251 GA FSKIDLRS YH++R+RE DIPKTAF YG ++ V+SFG+TNA A FM+LMN+VF Sbjct: 605 GATMFSKIDLRSGYHQLRIREEDIPKTAFIIHYGLFECTVMSFGLTNAPAFFMNLMNKVF 664 Query: 51250 KPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGH 51071 FLD FV+VF+DDIL+YS+S+EEH HLR VL L+ +LYA FSKC+FWL + FLGH Sbjct: 665 MEFLDKFVMVFIDDILIYSKSKEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQFLGH 724 Query: 51070 IIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKA 50891 I+ A G+ VD +E+V WT P T T+VRSFL LA YYRRF+E F+ I+ P+ +L +K Sbjct: 725 IVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQLLKKE 784 Query: 50890 AKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYA 50711 KF W+ C RSF LK +L AP L LP+ + +YCD S GLGCV+MQ GKV+AYA Sbjct: 785 EKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDASRQGLGCVVMQDGKVVAYA 844 Query: 50710 SRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQR 50531 SRQLR HE NYPTHDLKL VVHALKIWRHYL G ++YTDHKSL+YIF Q +L LRQR Sbjct: 845 SRQLRPHEGNYPTHDLKLAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQADLNLRQR 904 Query: 50530 RWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMREMVRDIQRLSSLGV 50360 RWLEL+KDYD+ I Y+ GKANVV DALSRKS ++ V+ E+ RD++ L +LG+ Sbjct: 905 RWLELIKDYDMGIHYYPGKANVVADALSRKSYCNVAWVEELCCEVQRDLEHL-NLGI 960 Score = 129 bits (320), Expect(3) = 5e-054 Identities = 141/510 (27%), Positives = 217/510 (41%), Gaps = 28/510 (5%) Frame = +1 Query: 8053 NCQEQENCKYVFTSMIKVFTFDVYALLNPGANLSYLIPYVANHFEIVPEKLCEPFYISTP 8232 + +E ++ + V + L + GA S++ A + KL P + TP Sbjct: 329 SAEEAQSAPEIILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTP 388 Query: 8233 VGESILAERVYHDCHVSTNHNMTMADLVELYIVEFDVILGMD*LHALHALYVSIDCIK*V 8412 G + V + A+L+ L + DVILGMD L + I C+ Sbjct: 389 -GGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGV---IHCVSRT 444 Query: 8413 FKFQILNEPIIIVVQQCLRVLFYLIPYGEEVSPKLVYLSLSRAN-DLSVEVPSLQL--VC 8583 K ++ + P+ +SL++A +++VE S +L + Sbjct: 445 IKLTNAKGEVVTF---------------QSPVPQKPGISLNQATGEVAVEKTSKKLEDIP 489 Query: 8584 IVGK----FLDDLFGVPPDREIDFGIQNIPDTRPISIP*YIMAPXXXXXXXXXXXDHVXX 8751 IV + F DDL +PP R+I+F I T PI Y M + + Sbjct: 490 IVREYPEVFPDDLTTMPPKRDIEFWIDLALGTAPIHKRPYRMGANELAEVKKQVDEQLQK 549 Query: 8752 XXXXXXXXXXGSPRLVFKEEK---------------VIP*DMYRLPPI**CNHKEKISSS 8886 G+P ++F E+K V + Y LP I + K ++ Sbjct: 550 GYIRPSTSPWGAP-VIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATM 608 Query: 8887 KDIWSLRSTFGFFFLFQY*PQIWLS*DESKGM*CSQDKFYKKVWALFISGYFHCFDI--- 9057 LRS + + +++ K + G F C + Sbjct: 609 FSKIDLRSGYHQLRI--------------------REEDIPKTAFIIHYGLFECTVMSFG 648 Query: 9058 ---APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVK 9228 APA FM LM++VF FLD F YS +KE+H LR+VL+ L+ + K Sbjct: 649 LTNAPAFFMNLMNKVFMEFLDKFVMVFIDDILIYSKSKEEHEQHLRLVLEKLKEHQLYAK 708 Query: 9229 FSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVD 9408 FSK +F LK V FLGHI++ +G+ VD +ES + P + SFL LA YYRRF++ Sbjct: 709 FSKCDFWLKEVQFLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIE 768 Query: 9409 RFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 FS I+ P+T++ + +F S C F EL +R F VYC AS Sbjct: 769 NFSKIAKPMTQLLKKEEKFIWSAECNRSFEELKRRLVSAPVLILPDQTKDFQVYCDAS 826 Score = 83.9 bits (204), Expect = 2e-013 Identities = 44/102 (43%), Positives = 58/102 (56%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 K +I + SPWGA V+F+ KK R+C+DY N VT K KYPL RI Sbjct: 549 KGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATM 608 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+LRSG H++++RE D+PKT FI YG + V+ LT Sbjct: 609 FSKIDLRSGYHQLRIREEDIPKTAFIIHYGLFECTVMSFGLT 650 Score = 74.1 bits (179), Expect(3) = 5e-054 Identities = 34/65 (52%), Positives = 51/65 (78%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCI-L*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+ + +GKV+ Y S+ L +E NYPTHD++LA++V +LKIW H+L G R +++TD+KS Sbjct: 830 LGCVVMQDGKVVAYASRQLRPHEGNYPTHDLKLAAVVHALKIWRHYLIGNRCEVYTDHKS 889 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 890 LKYIFT 895 Score = 60.1 bits (143), Expect = 3e-006 Identities = 26/44 (59%), Positives = 32/44 (72%) Frame = -3 Query: 50091 TKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLL 49960 TKMY DL+ +WW M+++IAEFVA C CQ VK EHQ+ GLL Sbjct: 978 TKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLL 1021 Score = 58.2 bits (138), Expect = 1e-005 Identities = 38/141 (26%), Positives = 74/141 (51%), Gaps = 3/141 (2%) Frame = -1 Query: 1052 HELLHKMGIVE---RFGVEFVTYQFKGNAKMWWRSHVGCQPAQAPPMTWASFSSLFMEKY 882 H + K+ +++ + V F T+Q +G A +W +++ +PA +TW+ F F + Sbjct: 76 HAIEKKLNLLQCNDQENVAFATHQLEGPASVWRDNYMVTRPA-GTEVTWSEFCQSFNKAQ 134 Query: 881 IPRTLRDRRRDEFFSLEQGRMSLTAYEAKFRASSRYATQLCFSPKERISRFVKGLR*ELR 702 +P + +++ EF S +QG ++ Y +F +RYA + + ER +F+ GL EL Sbjct: 135 VPEGIVAQKKREFRSPQQGTRAVIEYLHEFNRLARYAPEDVRTDAERQEKFLSGLDDEL- 193 Query: 701 ISALQVAATTKSFQEVVDFVIEVE 630 + + + F+++VD I E Sbjct: 194 -TNQLICRDYEDFEKLVDKAIRQE 216 Score = 58.2 bits (138), Expect(3) = 5e-054 Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHR-LVRL 9952 NL+QRRWLEL KDYDM I Y+PGKANVV +L R S C + EEL +V R L L Sbjct: 900 NLRQRRWLELIKDYDMGIHYYPGKANVVADALSRKSY-CN--VAWVEELCCEVQRDLEHL 956 Query: 9953 GVRIMDSTEGGIVVTNGAESSLV 10021 + I+ E G V A+ +LV Sbjct: 957 NLGIV---EHGFVAALVAQPTLV 976 Score = 51.9 bits (122), Expect = 8e-004 Identities = 31/114 (27%), Positives = 60/114 (52%) Frame = -1 Query: 53267 MQRTLRISKASETESVELATYRLRDVDINWYESWELSRGEGAPPMIWDEFVEAFQVHFLL 53088 +++ L + + ++ E+V AT++L W +++ ++R G + W EF ++F + Sbjct: 78 IEKKLNLLQCNDQENVAFATHQLEGPASVWRDNYMVTRPAGTE-VTWSEFCQSFNKAQVP 136 Query: 53087 PEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYAPTIVADMADRVHRYVMGLD 52926 + + F ++ R+V EY EF+ L RYAP V A+R +++ GLD Sbjct: 137 EGIVAQKKREFRSPQQGTRAVIEYLHEFNRLARYAPEDVRTDAERQEKFLSGLD 190 Score = 45.7 bits (106), Expect(2) = e-167 Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 11/151 (7%) Frame = -3 Query: 52299 SRQDQEASPNVITGILLLFS*SVYALIDPGSTL*FLSAFIASRIGIESELIE-PFEVATP 52123 S ++ +++P +I G + S L D G+T F+S A G+ ++ P V TP Sbjct: 329 SAEEAQSAPEIILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKLKIPMRVHTP 388 Query: 52122 LGDSVIATRVYKNCSVVIYSRRTIADLIELTIIEFDIIMGMDWLAA------CYAN---- 51973 G + T + +V I A+LI L + D+I+GMDWL C + Sbjct: 389 -GGGMTTTHYCPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVIHCVSRTIKL 447 Query: 51972 VDYRGKIVRFQFLGEPIIEWKGSTISRKVSSFHTLRPGRWLE 51847 + +G++V FQ P+ + G ++++ + + LE Sbjct: 448 TNAKGEVVTFQ---SPVPQKPGISLNQATGEVAVEKTSKKLE 486 Score = 40.2 bits (92), Expect = 2.7 Identities = 32/97 (32%), Positives = 47/97 (47%), Gaps = 1/97 (1%) Frame = +1 Query: 7021 DYERVELV*HELKCVAITWLDQWKEGRANNATHPWWACFEKAFFERFFPRELNEEKVREF 7200 D E V H+L+ A W D + R T W+ F ++F + P + +K REF Sbjct: 89 DQENVAFATHQLEGPASVWRDNYMVTRPAG-TEVTWSEFCQSFNKAQVPEGIVAQKKREF 147 Query: 7201 LTFKLDCINVHEYGLKFPKLSRYAP*MV-NDMERRVSF 7311 + + V EY +F +L+RYAP V D ER+ F Sbjct: 148 RSPQQGTRAVIEYLHEFNRLARYAPEDVRTDAERQEKF 185 >gb|AAD22153.1|AF061282_6 (AF061282) polyprotein [Sorghum bicolor] Length = 1484 Score = 581 bits (1482), Expect = e-163 Identities = 283/479 (59%), Positives = 359/479 (74%) Frame = -2 Query: 51778 LVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLE 51599 LVVDEFPDVF IEF I++L T PI PYRM EL+ELK+Q+++L + Sbjct: 526 LVVDEFPDVFPDELPGMPPDRDIEFIIELLPGTAPIAKRPYRMGVKELEELKKQIKELQD 585 Query: 51598 KGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKC 51419 KGFIRPS+SPWGAPV+FV KKDGS +M ++Y+ LN+VT+KN+YPLPRIDDLFDQL+GA Sbjct: 586 KGFIRPSSSPWGAPVIFVDKKDGSQRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLRGACV 645 Query: 51418 FSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFL 51239 FSKIDLRS YH++++R +DIPKTAF TRYG Y++ V+SFG+TNA A FM +MN+VF +L Sbjct: 646 FSKIDLRSGYHQLKIRNSDIPKTAFTTRYGLYEYTVMSFGLTNAPAYFMYMMNKVFMEYL 705 Query: 51238 DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGA 51059 D FV+VF+DDILV+S+++EEHA+HLR VL+ L+ KLYA SKCEFWL ++FLGH++ Sbjct: 706 DKFVVVFIDDILVFSKTKEEHAEHLRLVLQKLREHKLYAKRSKCEFWLEEVSFLGHVVSN 765 Query: 51058 DGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF* 50879 GI VD K++ V W PT +E+RSFL LA YYRRF+E F+ ++ P+ L +K AKF Sbjct: 766 GGIAVDPSKVKDVLNWKPPTDVSEIRSFLGLAGYYRRFIEGFSKLAKPMTALLEKNAKFV 825 Query: 50878 WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQL 50699 W++ C+ SF K +LT AP L LP+ + IYCD S +GLGCVLMQ G+V+AYASRQL Sbjct: 826 WSDKCQASFEEFKKRLTTAPVLVLPDLSKSFSIYCDASRLGLGCVLMQEGRVVAYASRQL 885 Query: 50698 RKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLE 50519 RKHE NYPTHDL+L VVHALKIWRHYL G DIYTDHKSL+YIF Q +L LRQRRWLE Sbjct: 886 RKHELNYPTHDLELAAVVHALKIWRHYLIGHKSDIYTDHKSLKYIFTQTDLNLRQRRWLE 945 Query: 50518 LLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSE 50342 L+KDYD+++ YH GKANVV DALSRK + PE E+ + L +LG+ + +E Sbjct: 946 LIKDYDLEVHYHPGKANVVADALSRKKYANELQATPESEELCAEFAYL-NLGMVVNATE 1003 Score = 338 bits (857), Expect(2) = e-128 Identities = 153/273 (56%), Positives = 200/273 (73%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 +R ++ E H + YSI+PGSTKMY DLR YWW G+K+D+AE+VA C CQ VK EHQ+ Sbjct: 1061 IRDTILREAHESAYSIHPGSTKMYLDLRQKYWWYGLKRDVAEYVALCDTCQRVKAEHQRP 1120 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 GLLQ ++IP WKWE + MDFI GLPRTQ DSIWVI+DRLTK AHF+PV+T+YS + Sbjct: 1121 AGLLQPMKIPEWKWEEVGMDFIVGLPRTQRGYDSIWVIVDRLTKVAHFIPVKTSYSGDRL 1180 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 LY+ IV LHGVP I+SDRG QFT++FW++ LGT++N ST +HPQTDG++ER Sbjct: 1181 AELYMERIVCLHGVPKKIVSDRGTQFTSHFWKAVHDSLGTKLNFSTAYHPQTDGQTERIN 1240 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVG 49432 Q LEDMLRA + + SWD LP EF+YNN Y S++MAP+EALYGRKCR+P+ W G Sbjct: 1241 QILEDMLRACALQYGTSWDKSLPYAEFSYNNSYQQSLKMAPFEALYGRKCRTPLFWNQTG 1300 Query: 49431 ETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 ET++ G D+++ +V+ I++ L +QSR KS Sbjct: 1301 ETQVFGTDVLRHAEQQVRTIRDNLRVAQSRQKS 1333 Score = 298 bits (754), Expect(5) = e-150 Identities = 172/441 (39%), Positives = 261/441 (59%), Gaps = 2/441 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCT-SILKEKEELAKDVHRLVRL 9952 NL+QRRWLEL KDYD+ + YHPGKANVV +L R E EEL + L L Sbjct: 937 NLRQRRWLELIKDYDLEVHYHPGKANVVADALSRKKYANELQATPESEELCAEFAYL-NL 995 Query: 9953 GVRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLK 10132 G+ ++++TE I +T E +V E D + +NV + F +GVL Sbjct: 996 GM-VVNATE--IEITPTLEEEIVKGQLE----DEKLKEIAQNVVLGKAPGFRIDDNGVLW 1048 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 + +R+CVP + +D I+ ++H + +S GS KMY LR+ Y GLK+D+ ++VA+ Sbjct: 1049 FGKRICVPEVKAIRDTILREAHESAYSIHPGSTKMYLDLRQKYWWYGLKRDVAEYVALCD 1108 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHF 10492 Q+VK EHQR GL + +++P WKWE + MDFI ++R ++SI+VIVDRLTK +HF Sbjct: 1109 TCQRVKAEHQRPAGLLQPMKIPEWKWEEVGMDFIVGLPRTQRGYDSIWVIVDRLTKVAHF 1168 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + V ++ + A+LY++++ LHG I+S+R FT+ WK+ S G+KLN + Sbjct: 1169 IPVKTSYSGDRLAELYMERIVCLHGVPKKIVSDRGTQFTSHFWKAVHDSLGTKLNFSTAY 1228 Query: 10673 ILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGR 10849 + + + + + LE MLRAC + + +WD ++P E+SYNNSY S++MAP+EALYGR Sbjct: 1229 HPQTDGQTERINQILEDMLRACALQYGTSWDKSLPYAEFSYNNSYQQSLKMAPFEALYGR 1288 Query: 10850 RGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVDD 11029 + R + + GE+ + G DV+ +++ I++ + QS +K D RRR L EV D Sbjct: 1289 KCRTPLFWNQTGETQVFGTDVLRHAEQQVRTIRDNLRVAQSRQKSYADTRRRELAFEVGD 1348 Query: 11030 WVYLKV*P*RVF*GLLIRGNLFP 11098 +VYLKV P R ++G L P Sbjct: 1349 YVYLKVSPMRSVKRFNMKGKLVP 1371 Score = 148 bits (370), Expect(2) = e-128 Identities = 67/152 (44%), Positives = 102/152 (67%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 +S+AD RR +L F++GD+V+LKVSPM+ V R + KGKL PRY+GP++++ G+VAY L+ Sbjct: 1332 KSYADTRRRELAFEVGDYVYLKVSPMRSVKRFNMKGKLVPRYVGPFKVLERRGEVAYRLE 1391 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LP L VH VFHVS L+KC+ P P++++ V + +YEE P+ +L+ R R++ Sbjct: 1392 LPESLSGVHDVFHVSQLKKCLRVPEEQLPLEELSVKGDLTYEEYPVKILETAERVTRSRV 1451 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + KV W ++ E T E ED+++ Y YLF Sbjct: 1452 IRMCKVQWNRHSEAEATWEREDDLRKSYSYLF 1483 Score = 120 bits (298), Expect(5) = e-150 Identities = 68/175 (38%), Positives = 93/175 (52%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA FM +M++VF +LD F +S KE+HA LR+VLQ LR + K SK Sbjct: 689 APAYFMYMMNKVFMEYLDKFVVVFIDDILVFSKTKEEHAEHLRLVLQKLREHKLYAKRSK 748 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF L+ V FLGH++S GI VD K++ ++ P I SFL LA YYRRF++ FS Sbjct: 749 CEFWLEEVSFLGHVVSNGGIAVDPSKVKDVLNWKPPTDVSEIRSFLGLAGYYRRFIEGFS 808 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 ++ P+T + +F S+ C+ F E KR F +YC AS Sbjct: 809 KLAKPMTALLEKNAKFVWSDKCQASFEEFKKRLTTAPVLVLPDLSKSFSIYCDAS 863 Score = 90.5 bits (221), Expect(5) = e-150 Identities = 47/103 (45%), Positives = 59/103 (56%) Frame = +2 Query: 8747 DKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXX 8926 DK FI + SPWGA V+F+ KK R+C+DY N VT K KYPL RI Sbjct: 585 DKGFIRPSSSPWGAPVIFVDKKDGSQRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLRGAC 644 Query: 8927 XXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+LRSG H++K+R D+PKT F RYG Y + V+ LT Sbjct: 645 VFSKIDLRSGYHQLKIRNSDIPKTAFTTRYGLYEYTVMSFGLT 687 Score = 84.3 bits (205), Expect = 2e-013 Identities = 78/281 (27%), Positives = 128/281 (44%), Gaps = 21/281 (7%) Frame = -1 Query: 1181 PRLTTGPIMTSDQHELFSKFLKLNPPVFK-VAQSEDAYDFLVDCHELLHKMGIVERFGVE 1005 P T PI D+ +F+K PPVF A +A D+L L+ + V Sbjct: 58 PPPTPPPIHVRDKR---GEFMKGRPPVFTHSADPMEADDWLRAVERQLNIAQCNDLEKVL 114 Query: 1004 FVTYQFKGNAKMWWRSHVGCQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFFSLEQG 825 + + Q +G A+ WW S+ +P A P+TW F F ++I + + +++EF SL G Sbjct: 115 YASGQLQGAAQTWWESYQAARPNNASPVTWLEFCRDFRARHINEGVMELKQEEFRSLRMG 174 Query: 824 RMSLTAYEAKFRASSRYATQLCFSPKERISRFVKGLR*ELRISALQVAATT-KSFQEVVD 648 M++ Y F +RYA ++ F+KGL ELR LQ+A T +FQ +V+ Sbjct: 175 SMTVAEYHDTFEQLARYAPNDVREDADKQRLFMKGLYYELR---LQLAGNTYPTFQALVN 231 Query: 647 FVIEVEGVKQDD------FTMASTSN---RFHKGGEFNXXXXXXXXXXXYPVRPIQFSLQ 495 I ++ +++ S SN RF +P +F Q Sbjct: 232 RAIVLDNMRKSQDKKRRMLAQGSGSNNRQRFSSHQGHQQRFQGPVSQWNRNQQPQRFQNQ 291 Query: 494 AVAGG--PP*TSQHFSK--------FGGYLQISSFSQRPMIKSRECYGCGKTGHIKRYCP 345 + +G PP ++ ++ G +S + C+ CGK GH+ CP Sbjct: 292 SQSGNQRPPFQQRNHNQQQHGQQAPRPGNPNANSTKRSASNTPTRCFRCGKEGHMSYDCP 351 Query: 344 KQ 339 ++ Sbjct: 352 EK 353 Score = 78.8 bits (191), Expect(2) = 3e-018 Identities = 36/79 (45%), Positives = 53/79 (66%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPS 11232 M+ V RF KGKL+PR++G +K+ +R G Y LELP+ L+ VH VFH+S L K L P Sbjct: 1357 MRSVKRFNMKGKLVPRYVGPFKVLERRGEVAYRLELPESLSGVHDVFHVSQLKKCLRVPE 1416 Query: 11233 LIVPTKIVGIKDNLSYEEF 11289 +P + + +K +L+YEE+ Sbjct: 1417 EQLPLEELSVKGDLTYEEY 1435 Score = 75.3 bits (182), Expect(5) = e-150 Identities = 36/65 (55%), Positives = 50/65 (76%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L G+V+ Y S+ L +E NYPTHD+ELA++V +LKIW H+L G + DI+TD+KS Sbjct: 867 LGCVLMQEGRVVAYASRQLRKHELNYPTHDLELAAVVHALKIWRHYLIGHKSDIYTDHKS 926 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 927 LKYIFT 932 Score = 67.9 bits (163), Expect = 1e-008 Identities = 38/138 (27%), Positives = 68/138 (48%) Frame = -1 Query: 53342 DFLSCNPTEFFGSRPQDDPQKFICQMQRTLRISKASETESVELATYRLRDVDINWYESWE 53163 +F+ P F S + ++ ++R L I++ ++ E V A+ +L+ W+ES++ Sbjct: 73 EFMKGRPPVFTHSADPMEADDWLRAVERQLNIAQCNDLEKVLYASGQLQGAAQTWWESYQ 132 Query: 53162 LSRGEGAPPMIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYA 52983 +R A P+ W EF F+ + + + + F LR +V EY F+ L RYA Sbjct: 133 AARPNNASPVTWLEFCRDFRARHINEGVMELKQEEFRSLRMGSMTVAEYHDTFEQLARYA 192 Query: 52982 PTIVADMADRVHRYVMGL 52929 P V + AD+ ++ GL Sbjct: 193 PNDVREDADKQRLFMKGL 210 Score = 50.0 bits (117), Expect = 0.003 Identities = 33/121 (27%), Positives = 55/121 (45%) Frame = +1 Query: 6913 EFLRMNTSSFTGTNTM*NLKNIVEEFKRIFEVIHVVDYERVELV*HELKCVAITWLDQWK 7092 EF++ FT + + + +R + D E+V +L+ A TW + ++ Sbjct: 73 EFMKGRPPVFTHSADPMEADDWLRAVERQLNIAQCNDLEKVLYASGQLQGAAQTWWESYQ 132 Query: 7093 EGRANNATHPWWACFEKAFFERFFPRELNEEKVREFLTFKLDCINVHEYGLKFPKLSRYA 7272 R NNA+ W F + F R + E K EF + ++ + V EY F +L+RYA Sbjct: 133 AARPNNASPVTWLEFCRDFRARHINEGVMELKQEEFRSLRMGSMTVAEYHDTFEQLARYA 192 Query: 7273 P 7275 P Sbjct: 193 P 193 Score = 47.6 bits (111), Expect = 0.016 Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 2/79 (2%) Frame = +3 Query: 42468 VQDSLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTP-HNWKKISSKTIHRGRIL-K*DG 42641 ++D+LR A R K+ AD L F+VG+ V +K++P + K+ + K G+++ + G Sbjct: 1320 IRDNLRVAQSRQKSYADTRRRELAFEVGDYVYLKVSPMRSVKRFNMK----GKLVPRYVG 1375 Query: 42642 PFDVIERAGEVSCMLKLSEIL 42704 PF V+ER GEV+ L+L E L Sbjct: 1376 PFKVLERRGEVAYRLELPESL 1396 Score = 41.4 bits (95), Expect(2) = 3e-018 Identities = 19/46 (41%), Positives = 27/46 (58%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFE 11435 I + R R++ + KV W EAT+E E+D+RK YS+LFE Sbjct: 1439 ILETAERVTRSRVIRMCKVQWNRHSEAEATWEREDDLRKSYSYLFE 1484 Score = 40.6 bits (93), Expect(5) = e-150 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = +1 Query: 8467 RVLFYLIPYGEEVSPKLVYLS--LSRANDLSVEVPSLQLVC--IVGKFLDDLFGVPPDRE 8634 RV+ P GE +S + + ++ N L+ +V LV F D+L G+PPDR+ Sbjct: 488 RVVVLTTPKGERISVDVTMQAPLAAKVNQLTDDVDPQNLVVDEFPDVFPDELPGMPPDRD 547 Query: 8635 IDFGIQNIPDTRPIS 8679 I+F I+ +P T PI+ Sbjct: 548 IEFIIELLPGTAPIA 562 >gb|AAC26240.1| (AF077407) contains similarity to reverse transcriptases (PFam: rvt.hmm, score: 116.22) [Arabidopsis thaliana] Length = 1322 Score = 570 bits (1452), Expect(2) = e-162 Identities = 288/501 (57%), Positives = 358/501 (70%), Gaps = 5/501 (0%) Frame = -2 Query: 51880 ISYLKARKMVRKGYIYHLVRVHDINAEAPTLQS-VLVVDEFPDVFXXXXXXXXXXXKIEF 51704 IS L+A KM+ KG +L+ + + S + VV EF DVF F Sbjct: 455 ISALQAEKMIEKGCEAYLMTISMPESVGQVAVSDIRVVQEFEDVFQSLQELPPSRSD-PF 513 Query: 51703 TIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSL 51524 TI++ T + PYRMAPAE+ ELK+QL D L K FIRPSTSPW AP+LF++KKDGS Sbjct: 514 TIELEPGTASLSKAPYRMAPAEMAELKKQLEDFLGKRFIRPSTSPWRAPMLFMKKKDGSF 573 Query: 51523 QMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAF 51344 ++ I+Y+ LN+VTVKN+YPLPRID+L DQL+GA CFSKIDL S YH++ + EAD+ KTAF Sbjct: 574 RLCIDYRGLNQVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSDYHQIPIAEADVRKTAF 633 Query: 51343 WTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHL 51164 TRYGH++F V+ FG+TNA A FM LMN VF+ FLD FVI+F+DDILVYS+S EEH HL Sbjct: 634 RTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHL 693 Query: 51163 RTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEV 50984 R V L+ QKL+A SKC FW + FLGHI+ A+G+ VD +KIEA++ W RPT E+ Sbjct: 694 RRVKEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNAVEI 753 Query: 50983 RSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLP 50804 RSFL LA YYRRFV+ FA ++ P+ +LT K F W+ CE F LK+ LT P L LP Sbjct: 754 RSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALP 813 Query: 50803 EGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWR 50624 E + Y +Y D SGVGLGCVLMQ GKVIAYASRQLRKHE NYPTHDL++ V+ ALKIWR Sbjct: 814 EHGEPYSVYTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWR 873 Query: 50623 HYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 YLYG V ++TDHKSL+YIF Q EL LRQRRW+EL+ DYD++I YH GKANV+VDALSR Sbjct: 874 SYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHPGKANVIVDALSR 933 Query: 50443 KSMGSLTDVQPE----MREMVRDIQR 50378 K +G+ E +M RD++R Sbjct: 934 KRVGAAPGQSVEALVRATKMYRDLKR 959 Score = 238 bits (600), Expect(2) = 2e-089 Identities = 116/254 (45%), Positives = 158/254 (61%) Frame = -3 Query: 50094 STKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINM 49915 +TKMY DL+ Y W GMK+D+A +VA+C CQ VK EHQ GG+LQ + IP WKW+ I M Sbjct: 950 ATKMYRDLKRYYQWVGMKRDVANWVAECDVCQLVKAEHQVPGGVLQSLPIPEWKWDFITM 1009 Query: 49914 DFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSII 49735 DF+ GLP ++ K D+IWVI+DRLTKSAHFL +R Sbjct: 1010 DFVVGLPVSRTK-DAIWVIVDRLTKSAHFLAIRK-------------------------- 1042 Query: 49734 SDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWD 49555 N W + +GT+V +ST +HPQ DG+SERTIQTLEDMLR ++D+ G W Sbjct: 1043 ---------NRWSGGAE-MGTKVQMSTAYHPQRDGQSERTIQTLEDMLRMCVLDWGGRWA 1092 Query: 49554 DHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVGETKLIGPDMIQQVVDKVKL 49375 DH L+EFAYNN Y SI M P+E LYGR CR+P+ W VGE + G D +Q+ ++++++ Sbjct: 1093 DHFSLVEFAYNNSYQMSIGMTPFETLYGRPCRTPLCWTQVGERSIYGADYVQETLERIRV 1152 Query: 49374 IQERLLASQSR*KS 49333 ++ + +Q R +S Sbjct: 1153 LKLNMKEAQDRKRS 1166 Score = 162 bits (406), Expect(3) = 8e-052 Identities = 98/272 (36%), Positives = 144/272 (52%) Frame = +2 Query: 10232 KMYRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDF 10411 KMYR L+ Y G+K+D+ +VA Q VK EHQ GG+ +++ +P WKW+ I MDF Sbjct: 952 KMYRDLKRYYQWVGMKRDVANWVAECDVCQLVKAEHQVPGGVLQSLPIPEWKWDFITMDF 1011 Query: 10412 IKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISN 10591 + SR + ++I+VIVDRLTKS+HFL + + Sbjct: 1012 VVGLPVSRTK-DAIWVIVDRLTKSAHFLAIRKNRWSGG---------------------- 1048 Query: 10592 RSAYFTAQLWKSFQKSQGSKLN*VLLFILKEVEKQCTIKTLEYMLRACVIDFKVNWDDNM 10771 A++ Q S ++ + + TI+TLE MLR CV+D+ W D+ Sbjct: 1049 ------AEMGTKVQMSTAYHPQ-------RDGQSERTIQTLEDMLRMCVLDWGGRWADHF 1095 Query: 10772 PLIEYSYNNSYHSSIQMAPYEALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQE 10951 L+E++YNNSY SI M P+E LYGR R + +VGE + G D V + +++++V++ Sbjct: 1096 SLVEFAYNNSYQMSIGMTPFETLYGRPCRTPLCWTQVGERSIYGADYVQETLERIRVLKL 1155 Query: 10952 RMMTTQSCKKFNTDIRRRPLECEVDDWVYLKV 11047 M Q K+ D RRR LE EV D VYLK+ Sbjct: 1156 NMKEAQDRKRSYADKRRRELEFEVGDRVYLKM 1187 Score = 120 bits (299), Expect(2) = 2e-089 Identities = 61/152 (40%), Positives = 93/152 (61%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 RS+AD RR +LEF++GD V+LK++ ++G R + KLSPRY+GP++IV +G VAY L+ Sbjct: 1165 RSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERVGPVAYRLE 1224 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 L + H VFH+SMLRKC+ V + + E +P+ +L+R+++ LR K Sbjct: 1225 LLDVMRAFHKVFHLSMLRKCLHKDDEVLAKIPEDLQPNMTLETRPVRVLERRIKELRRKK 1284 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + +KVLW + E T E E MK ++ F Sbjct: 1285 IPLIKVLWDCDGVTEETWEPEARMKARFKTWF 1316 Score = 117 bits (290), Expect(5) = 3e-071 Identities = 73/175 (41%), Positives = 93/175 (52%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APAAFM LM+ VF+ FLD F YS + E+H LR V + LR ++ K SK Sbjct: 652 APAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVKEKLREQKLFAKLSK 711 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + + FLGHI+S EG+ VD EKIE+ +PRP I SFL LA YYRRFV F+ Sbjct: 712 CSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNAVEIRSFLGLAGYYRRFVKGFA 771 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 S++ P+TK+T V F S CE F L + + VY AS Sbjct: 772 SMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGEPYSVYTDAS 826 Score = 80.0 bits (194), Expect(5) = 3e-071 Identities = 44/102 (43%), Positives = 56/102 (54%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 K FI + SPW A +LF++KK R+CIDY N VT K KYPL RI Sbjct: 549 KRFIRPSTSPWRAPMLFMKKKDGSFRLCIDYRGLNQVTVKNKYPLPRIDELLDQLRGATC 608 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+L S H++ + E DV KT F RYGH+ F+V+ LT Sbjct: 609 FSKIDLTSDYHQIPIAEADVRKTAFRTRYGHFEFVVMPFGLT 650 Score = 78.4 bits (190), Expect(5) = 3e-071 Identities = 37/65 (56%), Positives = 51/65 (77%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L GKVI Y S+ L +E NYPTHD+E+A+++F+LKIW +LYG +V +FTD+KS Sbjct: 830 LGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKS 889 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 890 LKYIFT 895 Score = 55.8 bits (132), Expect(5) = 3e-071 Identities = 23/38 (60%), Positives = 29/38 (75%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMG 9889 NL+QRRW+EL DYD+ I YHPGKANV+ +L R +G Sbjct: 900 NLRQRRWMELVADYDLEIAYHPGKANVIVDALSRKRVG 937 Score = 52.7 bits (124), Expect(3) = 8e-052 Identities = 27/77 (35%), Positives = 45/77 (58%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPS 11232 ++G R +++ KL PR++G ++I +RVG Y LEL + A H VFH+SML K L Sbjct: 1190 LRGPNRSISETKLSPRYMGPFRIVERVGPVAYRLELLDVMRAFHKVFHLSMLRKCLHKDD 1249 Query: 11233 LIVPTKIVGIKDNLSYE 11283 ++ ++ N++ E Sbjct: 1250 EVLAKIPEDLQPNMTLE 1266 Score = 49.6 bits (116), Expect = 0.004 Identities = 50/188 (26%), Positives = 79/188 (41%), Gaps = 15/188 (7%) Frame = -1 Query: 923 MTWASFSSLFMEKYIPRTLRDRRRDEFFSLEQGRMSLTAYEAKFRASSRYATQLCFSPKE 744 M+WA F F KY + DR F L+QG S+ Y+ +F YA + + Sbjct: 190 MSWADFVVEFNAKYFLKEALDRMEARFLELKQGERSVREYDREFNRLLAYAGRGMEDDQA 249 Query: 743 RISRFVKGLR*ELRISALQVAATTKSFQEVVDFVIEVEGVKQDDFTMASTSNRFHKGGEF 564 ++ +F++GLR +LR+ TK+ +V+ EVE Q S + + K Sbjct: 250 QMRKFLRGLRTDLRVRCRVSQYATKA--ALVETAAEVEEDLQRQVVGVSPAVQPKK---- 303 Query: 563 NXXXXXXXXXXXYPVRPIQFSLQAVAGGPP*TSQ-----HFSKFGGYLQISSFSQRPM-- 405 Q + GG P T Q H S+ G + FS + Sbjct: 304 -----------------TQQQMTPSKGGKPATEQKRKWDHPSRAGQGCRAGCFSCGSLDH 346 Query: 404 --------IKSRECYGCGKTGHI 360 ++RECY C + G++ Sbjct: 347 KVADCTQRAETRECYHCRERGYL 369 Score = 48.8 bits (114), Expect = 0.007 Identities = 34/103 (33%), Positives = 48/103 (46%) Frame = -1 Query: 53135 MIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYAPTIVADMAD 52956 M W +FV F + L E RFL L++ RSVREY EF+ L YA + D Sbjct: 190 MSWADFVVEFNAKYFLKEALDRMEARFLELKQGERSVREYDREFNRLLAYAGRGMEDDQA 249 Query: 52955 RVHRYVMGLDRYLNYSCMAVTLQPSMDIARVQAYAQGVEDRHR 52827 ++ +++ GL L C Q + A V+ A+ ED R Sbjct: 250 QMRKFLRGLRTDLRVRCR--VSQYATKAALVETAAEVEEDLQR 290 Score = 39.1 bits (89), Expect = 6.1 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Frame = +3 Query: 42477 SLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKIS-SKTIHRGRILK*DGPFDV 42653 ++++A R ++ AD+ LEF+VG+ V +K+ S S+T R + GPF + Sbjct: 1156 NMKEAQDRKRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYM---GPFRI 1212 Query: 42654 IERAGEVSCMLKLSEILK 42707 +ER G V+ L+L ++++ Sbjct: 1213 VERVGPVAYRLELLDVMR 1230 Score = 38.7 bits (88), Expect(3) = 8e-052 Identities = 17/46 (36%), Positives = 28/46 (59%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFE 11435 + + ++++LR KK+ +KVLW V E T+E E M+ R+ FE Sbjct: 1272 VLERRIKELRRKKIPLIKVLWDCDGVTEETWEPEARMKARFKTWFE 1317 Score = 30.5 bits (67), Expect(2) = e-162 Identities = 16/46 (34%), Positives = 26/46 (55%), Gaps = 1/46 (2%) Frame = -3 Query: 52089 KNCSVVIYSRRTIADLIELTIIEFDIIMGMDWLAACYANVD-YRGKI 51952 K + I ADLI + +D+I+GMDWL ++D +RG++ Sbjct: 386 KGVDIQIAGESMPADLIISLVELYDVILGMDWLDHYRVHLDCHRGRV 432 Score = 28.6 bits (62), Expect(5) = 3e-071 Identities = 37/133 (27%), Positives = 59/133 (43%), Gaps = 8/133 (6%) Frame = +1 Query: 8305 ADLVELYIVEFDVILGMD*LHALHALYVSIDCIK*VFKFQILNEPIIIVVQQCLRVLFYL 8484 ADL+ + +DVILGMD L V +DC + F+ P +V Q +R Sbjct: 399 ADLIISLVELYDVILGMDWLDHYR---VHLDCHRGRVSFE---RPEGRLVYQGVRPTSGS 452 Query: 8485 IPYGEEVSPKLV-------YLSLSRANDLS-VEVPSLQLVCIVGKFLDDLFGVPPDREID 8640 + + K++ +++S + V V +++V L +PP R Sbjct: 453 LVISALQAEKMIEKGCEAYLMTISMPESVGQVAVSDIRVVQEFEDVFQSLQELPPSRSDP 512 Query: 8641 FGIQNIPDTRPISIP*YIMAP 8703 F I+ P T +S Y MAP Sbjct: 513 FTIELEPGTASLSKAPYRMAP 533 >gb|AAD22158.1|AF061282_11 (AF061282) polyprotein [Sorghum bicolor] Length = 924 Score = 551 bits (1404), Expect = e-154 Identities = 265/424 (62%), Positives = 329/424 (77%), Gaps = 3/424 (0%) Frame = -2 Query: 51652 MAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNR 51473 M+ EL+ELK+QL++L +KG+IRPS SPWG+PVLFV+KKDGS++M I+Y+ LN VTVKN+ Sbjct: 1 MSVDELEELKKQLKELADKGYIRPSASPWGSPVLFVKKKDGSMRMCIDYRNLNAVTVKNK 60 Query: 51472 YPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMT 51293 YPLPRIDDL DQL+ AK FSKIDLRS YH++++R D+PKTAF TRYG Y+F V+SFG+T Sbjct: 61 YPLPRIDDLLDQLKDAKFFSKIDLRSGYHQMKIRSEDVPKTAFVTRYGQYEFTVVSFGLT 120 Query: 51292 NALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFS 51113 NA A FM++MN+VF LD FV+VF+DDILVYS S EEH HLR VL L+ +LYA FS Sbjct: 121 NAPAYFMNMMNKVFMEELDKFVVVFIDDILVYSASAEEHEQHLRVVLEKLRQNQLYAKFS 180 Query: 51112 KCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKF 50933 KCEFWL +AFLGH++ A+G+ VD KIEAVK W +P T++RSFL LA YYRRF+E F Sbjct: 181 KCEFWLEEVAFLGHVLTAEGVAVDPAKIEAVKEWEQPRNATDIRSFLGLAGYYRRFIENF 240 Query: 50932 ALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGL 50753 + I+ P+ L +K +F WT CE+SF LK KLT P L LP+ +V+YCD S GL Sbjct: 241 SKIAKPMTNLLKKTNEFEWTPECEQSFQTLKQKLTTTPVLALPDIEKDFVVYCDASKQGL 300 Query: 50752 GCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSL 50573 GCVLMQ GKVIAYAS QL+ HE YPTHDL+L VVHALKIWRHYL G DIYTDHKSL Sbjct: 301 GCVLMQSGKVIAYASLQLKDHEQRYPTHDLELAAVVHALKIWRHYLIGNKCDIYTDHKSL 360 Query: 50572 QYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSMG---SLTDVQPEMR 50402 +Y F Q++L +RQRRWLEL+KDY+++I YH GKANVV DALSRKS S+ + PE+ Sbjct: 361 KYFFTQEDLNMRQRRWLELIKDYNLEIHYHPGKANVVADALSRKSYCHSLSMEAIPPELC 420 Query: 50401 EMVRDIQ 50381 + + D+Q Sbjct: 421 QEMGDLQ 427 Score = 325 bits (825), Expect(2) = e-129 Identities = 149/273 (54%), Positives = 195/273 (70%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 LR +++ E H + Y I+PGSTKMY DLR ++WW M+KDIA VA+C C VK EHQ+ Sbjct: 496 LREEILSEAHDSRYCIHPGSTKMYADLRKVFWWKDMRKDIAGHVARCDTCNRVKAEHQRP 555 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 GLL+ +++P WKWE I+MDFI GLPR+ DSIWVI+DRLTK AHF+PV+T Y E Sbjct: 556 AGLLKPLDVPEWKWEGISMDFIVGLPRSPKGHDSIWVIVDRLTKVAHFIPVKTVYRTEQL 615 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 LYV I+RLHG PTSIISDRG Q+ + FW+S K +GT+++ ST +HPQTDG++ER Sbjct: 616 ADLYVDHILRLHGAPTSIISDRGPQWVSRFWQSLHKAIGTRLDYSTAYHPQTDGQTERVN 675 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVG 49432 Q LEDMLRA ++ + W+ L EF+YNN Y +SIQM+P+EALYGRKCR+P+ W VG Sbjct: 676 QVLEDMLRACVLKYGSDWEKSLSHAEFSYNNSYQASIQMSPFEALYGRKCRTPLIWSQVG 735 Query: 49431 ETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 E GPD I++ + V ++E L +QSR KS Sbjct: 736 ERAFFGPDKIKEAEEGVAQVRENLRIAQSRQKS 768 Score = 266 bits (674), Expect(4) = e-137 Identities = 162/441 (36%), Positives = 248/441 (55%), Gaps = 3/441 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEK--EELAKDVHRLVR 9949 N++QRRWLEL KDY++ I YHPGKANVV +L R S C S+ E EL ++ Sbjct: 370 NMRQRRWLELIKDYNLEIHYHPGKANVVADALSRKSY-CHSLSMEAIPPELCQE------ 422 Query: 9950 LGVRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL 10129 +G ++ G++ + L ++ P + E ++ + F G Sbjct: 423 MGDLQLEIVPKGLLSELRIQYDLEDRIRRAQRGCPEIQEVHERMEGGKCPEFRVDERGTY 482 Query: 10130 KYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMF 10309 + R+CVP+ + ++ I+ ++H + + GS KMY LR+V+ K ++KDI VA Sbjct: 483 WCKNRICVPSDEPLREEILSEAHDSRYCIHPGSTKMYADLRKVFWWKDMRKDIAGHVARC 542 Query: 10310 SNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSH 10489 +VK EHQR GL K +++P WKWE I+MDFI S + H+SI+VIVDRLTK +H Sbjct: 543 DTCNRVKAEHQRPAGLLKPLDVPEWKWEGISMDFIVGLPRSPKGHDSIWVIVDRLTKVAH 602 Query: 10490 FLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLL 10669 F+ V + E A LY+ + RLHG IIS+R + ++ W+S K+ G++L+ Sbjct: 603 FIPVKTVYRTEQLADLYVDHILRLHGAPTSIISDRGPQWVSRFWQSLHKAIGTRLDYSTA 662 Query: 10670 FILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYG 10846 + + + + + + LE MLRACV+ + +W+ ++ E+SYNNSY +SIQM+P+EALYG Sbjct: 663 YHPQTDGQTERVNQVLEDMLRACVLKYGSDWEKSLSHAEFSYNNSYQASIQMSPFEALYG 722 Query: 10847 RRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVD 11026 R+ R + +VGE G D + + + + ++E + QS +K D RRR LE V Sbjct: 723 RKCRTPLIWSQVGERAFFGPDKIKEAEEGVAQVRENLRIAQSRQKSYADNRRRDLEFYVG 782 Query: 11027 DWVYLKV*P*RVF*GLLIRGNLFP 11098 D VYLKV P R ++G L P Sbjct: 783 DHVYLKVSPLRGTFRFHVKGKLAP 806 Score = 165 bits (413), Expect(2) = e-129 Identities = 76/152 (50%), Positives = 103/152 (67%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 +S+ADNRR DLEF +GD V+LKVSP++G R KGKL+PR++GPY+I + IGK+AY L+ Sbjct: 767 KSYADNRRRDLEFYVGDHVYLKVSPLRGTFRFHVKGKLAPRFVGPYRISKRIGKLAYRLE 826 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LP ++ VHPVFHVS LRKC+ P PI+ + + E Y E P+ +LDR + R+ Sbjct: 827 LPEEMSGVHPVFHVSQLRKCLKLPEEEVPIETLDLQETLEYREYPVRILDRATKETRSST 886 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 KVLW N+ E T E E E++ +YPYLF Sbjct: 887 FPMCKVLWSNHTEREATWEKESELQLRYPYLF 918 Score = 122 bits (303), Expect(4) = e-137 Identities = 68/175 (38%), Positives = 97/175 (54%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA FM +M++VF LD F YS + E+H LR+VL+ LR + KFSK Sbjct: 122 APAYFMNMMNKVFMEELDKFVVVFIDDILVYSASAEEHEQHLRVVLEKLRQNQLYAKFSK 181 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF L+ V FLGH+++ EG+ VD KIE+ + +P +I SFL LA YYRRF++ FS Sbjct: 182 CEFWLEEVAFLGHVLTAEGVAVDPAKIEAVKEWEQPRNATDIRSFLGLAGYYRRFIENFS 241 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 I+ P+T + +F+ + CE F+ L ++ F+VYC AS Sbjct: 242 KIAKPMTNLLKKTNEFEWTPECEQSFQTLKQKLTTTPVLALPDIEKDFVVYCDAS 296 Score = 97.9 bits (240), Expect(4) = e-137 Identities = 50/103 (48%), Positives = 62/103 (59%) Frame = +2 Query: 8747 DKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXX 8926 DK +I + SPWG+ VLF++KK +R+CIDY N VT K KYPL RI Sbjct: 18 DKGYIRPSASPWGSPVLFVKKKDGSMRMCIDYRNLNAVTVKNKYPLPRIDDLLDQLKDAK 77 Query: 8927 XXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+LRSG H+MK+R DVPKT F+ RYG Y F V+ LT Sbjct: 78 FFSKIDLRSGYHQMKIRSEDVPKTAFVTRYGQYEFTVVSFGLT 120 Score = 81.9 bits (199), Expect(2) = 1e-018 Identities = 37/79 (46%), Positives = 52/79 (64%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPS 11232 ++G RF KGKL PRF+G Y+I KR+G Y LELP+E++ VH VFH+S L K L P Sbjct: 792 LRGTFRFHVKGKLAPRFVGPYRISKRIGKLAYRLELPEEMSGVHPVFHVSQLRKCLKLPE 851 Query: 11233 LIVPTKIVGIKDNLSYEEF 11289 VP + + +++ L Y E+ Sbjct: 852 EEVPIETLDLQETLEYREY 870 Score = 73.4 bits (177), Expect(4) = e-137 Identities = 37/65 (56%), Positives = 49/65 (74%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*-NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L +GKVI Y S L +E+ YPTHD+ELA++V +LKIW H+L G + DI+TD+KS Sbjct: 300 LGCVLMQSGKVIAYASLQLKDHEQRYPTHDLELAAVVHALKIWRHYLIGNKCDIYTDHKS 359 Query: 9747 L*YVFT 9764 L Y FT Sbjct: 360 LKYFFT 365 Score = 39.9 bits (91), Expect(2) = 1e-018 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFE 11435 I D ++ R+ KVLW N EAT+E E +++ RY +LFE Sbjct: 874 ILDRATKETRSSTFPMCKVLWSNHTEREATWEKESELQLRYPYLFE 919 >gb|AAC69377.1| (AC005398) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1328 Score = 534 bits (1362), Expect(2) = e-154 Identities = 283/545 (51%), Positives = 359/545 (64%), Gaps = 1/545 (0%) Frame = -2 Query: 51880 ISYLKARKMVRKGYIYHLVRVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFT 51701 IS ++A KM+ KG +L EF DVF FT Sbjct: 431 ISAVQAEKMIEKGCEAYL--------------------EFEDVFQSLQGLPPSRSD-PFT 469 Query: 51700 IDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQ 51521 I++ T P+ PYRMAPAE+ ELK+QL DLL GAPVLFV+KKDGS + Sbjct: 470 IELEPGTAPLSKAPYRMAPAEMAELKKQLEDLL------------GAPVLFVKKKDGSFR 517 Query: 51520 MSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFW 51341 + I+Y+ LN VTVKN+YPLPRID+L DQL+GA CFSKIDL S YH + + EAD+ KTAF Sbjct: 518 LCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVRKTAFR 577 Query: 51340 TRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLR 51161 TRYGH++F V+ FG+TNA A FM LMN VF+ LD FVI+F+DDILVYS+S EEH HLR Sbjct: 578 TRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHLR 637 Query: 51160 TVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVR 50981 V+ L+ QKL+A SKC FW + FLGHI+ A+G+ VD +KIEA++ W PT TE+R Sbjct: 638 RVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEIR 697 Query: 50980 SFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPE 50801 SFL LA YYRRFV+ FA ++ P+ +LT K F W+ CE F LK+ LT P L LPE Sbjct: 698 SFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPE 757 Query: 50800 GPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRH 50621 + Y++Y D SGVGLGCVLMQ GKVIAYASRQLRKHE NYPTHDL++ V+ ALKIWR Sbjct: 758 HGEPYMVYTDASGVGLGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRS 817 Query: 50620 YLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRK 50441 YLYG +V ++TDHKSL+YIF Q EL LRQR+W+EL+ DYD++I YH GKANVV DALS K Sbjct: 818 YLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYDLEIAYHPGKANVVADALSHK 877 Query: 50440 SMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQYKDP- 50264 +G+ E + + +L +C E G+ V ++ ++ V+ Q KD Sbjct: 878 RVGAAPGQSVEAL-----VSEIGALRLCAVAREPLGLE--AVDRADLLTRVRLAQEKDEG 930 Query: 50263 ILAQYR 50246 ++A Y+ Sbjct: 931 LIAAYK 936 Score = 274 bits (694), Expect(2) = e-101 Identities = 127/236 (53%), Positives = 174/236 (72%) Frame = -3 Query: 50040 KDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWV 49861 +D+A +VA+C CQ VK EHQ GG+LQ + IP WKW+ I +DF+ GLP ++ K D+IWV Sbjct: 941 EDVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLPVSRTK-DAIWV 999 Query: 49860 IIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKG 49681 I+DRLTKSAHFL +R T A + YV EIV+LHGVP SI+SDR ++FT+ FWR+FQ Sbjct: 1000 IVDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAE 1059 Query: 49680 LGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSI 49501 +GT+V +ST +HPQT G+SERTIQTLEDMLR ++D+ G W DHL L+EFAYNN Y +SI Sbjct: 1060 MGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASI 1119 Query: 49500 QMAPYEALYGRKCRSPIGWFDVGETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 MAP+EALY R CR+P+ VGE + G D +Q+ +++++++ + +Q R +S Sbjct: 1120 GMAPFEALYERPCRTPLCLTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQRS 1175 Score = 198 bits (499), Expect(3) = 2e-063 Identities = 106/256 (41%), Positives = 164/256 (63%), Gaps = 1/256 (0%) Frame = +2 Query: 10280 KDIVKFVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFV 10459 +D+ +VA Q VK EHQ GG+ +++ +P WKW+ I +DF+ SR + ++I+V Sbjct: 941 EDVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLPVSRTK-DAIWV 999 Query: 10460 IVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKS 10639 IVDRLTKS+HFL + T+ A AK Y+ ++ +LHG V I+S+R + FT+ W++FQ Sbjct: 1000 IVDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAE 1059 Query: 10640 QGSKLN*VLLFILKEV-EKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSI 10816 G+K+ + + + + TI+TLE MLR CV+D+ +W D++ L+E++YNNSY +SI Sbjct: 1060 MGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHWADHLSLVEFAYNNSYPASI 1119 Query: 10817 QMAPYEALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDI 10996 MAP+EALY R R + L +VGE + G D V + ++++V++ M Q ++ D Sbjct: 1120 GMAPFEALYERPCRTPLCLTQVGERSIYGADYVQETTERIRVLKLNMKEAQDRQRSYADK 1179 Query: 10997 RRRPLECEVDDWVYLKV 11047 RRR LE EV D VYLK+ Sbjct: 1180 RRRELEFEVGDRVYLKM 1196 Score = 124 bits (308), Expect(2) = e-101 Identities = 62/152 (40%), Positives = 94/152 (61%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 RS+AD RR +LEF++GD V+LK++ ++G R + KLSPRY+GP++IV +G VAY L+ Sbjct: 1174 RSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERVGPVAYRLE 1233 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LP + H VFHVSMLRKC+ V + + E +P+ +L+R+++ LR K Sbjct: 1234 LPDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKK 1293 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + +KVLW + + T E E MK ++ F Sbjct: 1294 IPLIKVLWDCDGVTKETWEPEARMKARFKKWF 1325 Score = 111 bits (275), Expect(5) = 2e-068 Identities = 70/175 (40%), Positives = 92/175 (52%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APAAFM LM+ VF+ LD F YS + E+H LR V++ LR ++ K SK Sbjct: 595 APAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHLRRVMEKLREQKLFAKLSK 654 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + + FLGHI+S EG+ VD EKIE+ + P I SFL LA YYRRFV F+ Sbjct: 655 CSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEIRSFLGLAGYYRRFVKGFA 714 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 S++ P+TK+T V F S CE F L + ++VY AS Sbjct: 715 SMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGEPYMVYTDAS 769 Score = 77.6 bits (188), Expect(5) = 2e-068 Identities = 37/65 (56%), Positives = 50/65 (76%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L GKVI Y S+ L +E NYPTHD+E+A+++F+LKIW +LYG V +FTD+KS Sbjct: 773 LGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYLYGGNVQVFTDHKS 832 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 833 LKYIFT 838 Score = 71.8 bits (173), Expect(5) = 2e-068 Identities = 41/91 (45%), Positives = 50/91 (54%) Frame = +2 Query: 8783 GALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCH 8962 GA VLF++KK R+CIDY N VT K KYPL RI I+L SG H Sbjct: 503 GAPVLFVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYH 562 Query: 8963 KMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 + + E DV KT F RYGH+ F+V+ LT Sbjct: 563 LIPIAEADVRKTAFRTRYGHFEFVVMPFGLT 593 Score = 57.0 bits (135), Expect(3) = 2e-063 Identities = 28/77 (36%), Positives = 46/77 (59%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPS 11232 ++G R +++ KL PR++G ++I +RVG Y LELP + A H VFH+SML K L Sbjct: 1199 LRGPNRSISETKLSPRYMGPFRIVERVGPVAYRLELPDVMRAFHKVFHVSMLRKCLHKDD 1258 Query: 11233 LIVPTKIVGIKDNLSYE 11283 ++ ++ N++ E Sbjct: 1259 EVLAKIPEDLQPNMTLE 1275 Score = 52.7 bits (124), Expect(5) = 2e-068 Identities = 22/38 (57%), Positives = 28/38 (72%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMG 9889 NL+QR+W+EL DYD+ I YHPGKANVV +L +G Sbjct: 843 NLRQRQWMELVADYDLEIAYHPGKANVVADALSHKRVG 880 Score = 49.6 bits (116), Expect = 0.004 Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 1/180 (0%) Frame = -1 Query: 1361 ELPPQPTPEMINQVLAYLSGLSDQGQTPPIFSAPAPQVPEVQHAASVAPRMDASLEI-ST 1185 ++P ++ Q+L L+G+ P+ + AP+V EVQ A+VA + + L + Sbjct: 94 QVPEVGLAGLLRQLLERLAGVV------PVEAPVAPRVAEVQQRAAVAEEVPSYLRMMEQ 147 Query: 1184 FPRLTTGPIMTSDQHELFSKFLKLNPPVFKVAQSEDAYDFLVDCHELLHKMGIVERFGVE 1005 R+ TG E+ + F ++ Y ++ Sbjct: 148 LQRIGTGYFSGGTSPEVADSWRSRVERNFGSSRCPAEYR-------------------ID 188 Query: 1004 FVTYQFKGNAKMWWRSHVGCQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFFSLEQG 825 + +G+A +WWRS V + QA ++WA F + F KY P+ DR F L QG Sbjct: 189 LAVHFLEGDAHLWWRS-VTARRRQAD-ISWADFVAEFNAKYFPQEALDRMEAHFLELTQG 246 Query: 824 R 822 R Sbjct: 247 R 247 Score = 39.9 bits (91), Expect(2) = 0.29 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Frame = +3 Query: 42477 SLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKIS-SKTIHRGRILK*DGPFDV 42653 ++++A R ++ AD+ LEF+VG+ V +K+ S S+T R + GPF + Sbjct: 1165 NMKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYM---GPFRI 1221 Query: 42654 IERAGEVSCMLKLSEILK 42707 +ER G V+ L+L ++++ Sbjct: 1222 VERVGPVAYRLELPDVMR 1239 Score = 39.5 bits (90), Expect(2) = e-154 Identities = 31/106 (29%), Positives = 49/106 (45%), Gaps = 2/106 (1%) Frame = -3 Query: 52269 VITGILLLFS*SVYALIDPGSTL*FLSAFIASRIGIESELIEPFEVATPLGDSVIATRVY 52090 V G LL+ + L D G++ F++ ASR I + E G +A Sbjct: 301 VCVGTLLVGGVEAHVLFDSGASHCFITPESASRGNIRGDPGEQLGAVKVAGGQFVAVLGR 360 Query: 52089 -KNCSVVIYSRRTIADLIELTIIEFDIIMGMDWLAACYANVD-YRGKI 51952 K + I ADLI + +D+I+GMDWL ++D +RG++ Sbjct: 361 TKGVDIQIAGESMPADLIISPVELYDVILGMDWLDHYRVHLDCHRGRV 408 Score = 37.5 bits (85), Expect(3) = 2e-063 Identities = 16/46 (34%), Positives = 28/46 (60%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFE 11435 + + ++++LR KK+ +KVLW V + T+E E M+ R+ FE Sbjct: 1281 VLERRIKELRRKKIPLIKVLWDCDGVTKETWEPEARMKARFKKWFE 1326 Score = 36.7 bits (83), Expect(5) = 2e-068 Identities = 57/238 (23%), Positives = 90/238 (36%), Gaps = 1/238 (0%) Frame = +1 Query: 7990 AAPKGATF-DTGGEANHLYGITNCQEQENCKYVFTSMIKVFTFDVYALLNPGANLSYLIP 8166 AAP+G T + GG +N IT E C + V + + L + GA+ ++ P Sbjct: 275 AAPQGCTTREIGGTSNR--AITGFLAHEVC----VGTLLVGGVEAHVLFDSGASHCFITP 328 Query: 8167 YVANHFEIVPEKLCEPFYISTPVGESILAERVYHDCHVSTNHNMTMADLVELYIVEFDVI 8346 A+ I + + + G+ + + ADL+ + +DVI Sbjct: 329 ESASRGNIRGDPGEQLGAVKVAGGQFVAVLGRTKGVDIQIAGESMPADLIISPVELYDVI 388 Query: 8347 LGMD*LHALHALYVSIDCIK*VFKFQILNEPIIIVVQQCLRVLFYLIPYGEEVSPKLVYL 8526 LGMD L V +DC + F+ P +V Q +R + + K++ Sbjct: 389 LGMDWLDHYR---VHLDCHRGRVSFE---RPEGSLVYQGVRPTSGSLVISAVQAEKMIEK 442 Query: 8527 SLSRANDLSVEVPSLQLVCIVGKFLDDLFGVPPDREIDFGIQNIPDTRPISIP*YIMAP 8703 + SLQ G+PP R F I+ P T P+S Y MAP Sbjct: 443 GCEAYLEFEDVFQSLQ-------------GLPPSRSDPFTIELEPGTAPLSKAPYRMAP 488 Score = 22.3 bits (46), Expect(2) = 0.29 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%) Frame = +1 Query: 42709 FHPTFHVSFL-KPFHEDVE 42762 FH FHVS L K H+D E Sbjct: 1241 FHKVFHVSMLRKCLHKDDE 1259 >gb|AAD17358.1| (AF128395) contains similarity to reverse transcriptase (Pfam: PF00078, Score=137.6, E=2.3e-37, N=1) and CCHC-type zinc fingers (Pfam: PF00098, Score=18.3, E=0.024, N=2) [Arabidopsis thaliana] Length = 901 Score = 420 bits (1068), Expect(3) = e-138 Identities = 244/543 (44%), Positives = 313/543 (56%) Frame = -2 Query: 51895 PKGKFISYLKARKMVRKGYIYHLVRVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXX 51716 P+G+ + Y KM+ KG +LV + T +SV V P Sbjct: 326 PEGRLV-YQGVEKMIEKGCEAYLVTIS-------TPESVGQVAGLPP-----------SR 366 Query: 51715 KIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKK 51536 F I++ T + PYRMAPAE+ ++K+QL DLL KGFIRPSTSPWG PVLFV+KK Sbjct: 367 SDPFMIELEPGTASLSKAPYRMAPAEMAKVKKQLDDLLGKGFIRPSTSPWGEPVLFVKKK 426 Query: 51535 DGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIP 51356 D S ++ I+Y+ LN+VT+K +YPLPRI++L DQL+GA CFSKID S YH++ + EA + Sbjct: 427 DWSFRLCIDYRGLNQVTMKKKYPLPRINELLDQLRGATCFSKIDFTSGYHQIPIAEAYVR 486 Query: 51355 KTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEH 51176 KTAF TRYGH++F V+ FG+TNA A FM LMN VF+ FLD FVI+F+DDILVYS+S EEH Sbjct: 487 KTAFKTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEH 546 Query: 51175 ADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT 50996 HL V+ L QKL+A SKC FW + FLGHI A G+ VD +KIEA++ W +PT Sbjct: 547 EVHLMRVMEKLWEQKLFAKLSKCSFWQREMGFLGHIFSAKGVSVDPEKIEAIRDWPKPTN 606 Query: 50995 PTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPF 50816 TE+RSFL LA YYRRFV+ FA ++ P+ +LT K F W+ CE F LK+ L P Sbjct: 607 ATEIRSFLGLAGYYRRFVKGFASMAQPMSKLTGKNVPFVWSLDCEEGFMSLKEMLMSTPV 666 Query: 50815 LNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHAL 50636 L L GKVIAY SRQLRKHE NYPTHDL++ V+ AL Sbjct: 667 LI----------------ARAWRALHGRGKVIAYGSRQLRKHEGNYPTHDLEMVAVIFAL 710 Query: 50635 KIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVD 50456 KIWR YLYG V I YH GKANVV D Sbjct: 711 KIWRSYLYG----------------------------------GKVQIAYHPGKANVVTD 736 Query: 50455 ALSRKSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQ 50276 ALSRK +G+ ++ +V +I +L +C E G+ V + ++ V+ Q Sbjct: 737 ALSRKRVGAAPG--QSVKALVSEI---DALRLCAVAREPLGLE--AVDQVDLLSRVRLAQ 789 Query: 50275 YKD 50267 KD Sbjct: 790 EKD 792 Score = 107 bits (265), Expect(4) = 2e-066 Identities = 64/151 (42%), Positives = 86/151 (56%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APAAFM LM+ VF+ FLD F YS + E+H L V++ L ++ K SK Sbjct: 509 APAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLMRVMEKLWEQKLFAKLSK 568 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + + FLGHI S +G+ VD EKIE+ +P+P I SFL LA YYRRFV F+ Sbjct: 569 CSFWQREMGFLGHIFSAKGVSVDPEKIEAIRDWPKPTNATEIRSFLGLAGYYRRFVKGFA 628 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 S++ P++K+T V F S CE F L + Sbjct: 629 SMAQPMSKLTGKNVPFVWSLDCEEGFMSLKE 659 Score = 91.3 bits (223), Expect(3) = e-138 Identities = 41/81 (50%), Positives = 58/81 (70%), Gaps = 5/81 (6%) Frame = -3 Query: 50175 IVYTRYC-----RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQC 50011 +V+ R C LR++++ E H++ +SI+PG+TKMY DL+ Y W GMK+D+A +V +C Sbjct: 815 LVHGRVCVPKDKELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVANWVEEC 874 Query: 50010 SNCQ*VKIEHQKSGGLLQEIEIPTWK 49933 CQ VKIEHQ LLQ + IP WK Sbjct: 875 DVCQLVKIEHQVPSSLLQSLPIPEWK 900 Score = 82.3 bits (200), Expect(4) = 2e-066 Identities = 45/105 (42%), Positives = 57/105 (53%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + K FI + SPWG VLF++KK R+CIDY N VT KKKYPL RI Sbjct: 403 LLGKGFIRPSTSPWGEPVLFVKKKDWSFRLCIDYRGLNQVTMKKKYPLPRINELLDQLRG 462 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+ SG H++ + E V KT F RYGH+ F+V+ LT Sbjct: 463 ATCFSKIDFTSGYHQIPIAEAYVRKTAFKTRYGHFEFVVMPFGLT 507 Score = 76.1 bits (184), Expect(4) = 2e-066 Identities = 58/189 (30%), Positives = 91/189 (47%), Gaps = 6/189 (3%) Frame = +2 Query: 9821 MSILYHPGKANVVTHSLRRLSMGCT------SILKEKEELAKDVHRLVRLGVRIMDSTEG 9982 + I YHPGKANVVT +L R +G +++ E + L LG+ +D + Sbjct: 722 VQIAYHPGKANVVTDALSRKRVGAAPGQSVKALVSEIDALRLCAVAREPLGLEAVDQVD- 780 Query: 9983 GIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKYQERLCVPNM 10162 S V +EK D+ I E + Q V +G + R+CVP Sbjct: 781 --------LLSRVRLAQEK-DEGLIAASKAEGFEYQFV------ANGTILVHGRVCVPKD 825 Query: 10163 DGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQ 10342 + I+ ++H++ FS G+ KMYR L+ Y G+K+D+ +V Q VK+EHQ Sbjct: 826 KELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVANWVEECDVCQLVKIEHQ 885 Query: 10343 RLGGLAKNIELP*WK 10387 L +++ +P WK Sbjct: 886 VPSSLLQSLPIPEWK 900 Score = 57.4 bits (136), Expect(4) = 2e-066 Identities = 25/46 (54%), Positives = 35/46 (75%) Frame = +3 Query: 9591 GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDI 9728 GKVI Y S+ L +E NYPTHD+E+ +++F+LKIW +LYG +V I Sbjct: 679 GKVIAYGSRQLRKHEGNYPTHDLEMVAVIFALKIWRSYLYGGKVQI 724 Score = 32.1 bits (71), Expect(3) = e-138 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Frame = -3 Query: 52254 LLLFS*SVYALIDPGSTL*FLSAFIASRIGIESELIEPFEVATPLGDSVIATRVY-KNCS 52078 LL+ + L D G++ F++ ASR I + E F G +A K Sbjct: 219 LLVGGVEAHVLFDSGASHCFITFESASRGNIRGDPGEQFGAVKVDGGQFLAVLGRAKGVD 278 Query: 52077 VVIYSRRTIADLIELTIIEFDIIMGMDWLAACYANVDYRGKIVRFQ 51940 + I ADLI + +D+I+ MDWL ++D V F+ Sbjct: 279 IQIEGESMPADLIISPVELYDVILRMDWLDLYRVHLDCHCGRVSFE 324 >dbj|BAA90795.1| (AP001168) Similar to 22 kDa kafirin cluster; Ty3-Gypsy type (AF061282) [Oryza sativa] Length = 963 Score = 355 bits (902), Expect(3) = e-137 Identities = 164/273 (60%), Positives = 206/273 (75%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ ++ E H YSI+PGSTKMY DLR +WW MK++IAE+VA C CQ VK EHQK Sbjct: 529 LKDAILKEAHDTLYSIHPGSTKMYQDLRERFWWASMKREIAEYVAVCDVCQRVKAEHQKP 588 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 GLLQ ++IP WKWE I MDFITGLPRT DSIWVI+DRLTK AHF+PV+TTYS Sbjct: 589 AGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRL 648 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 LY+ IV LHGVP I+SDRG+QFT+NFW+ Q+ +G+++N ST +HPQTDG++ER Sbjct: 649 AELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVN 708 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVG 49432 Q LEDMLRA +DF GSWD +LP EF+YNN Y +S+QMAPYEALYGRKCR+P+ W G Sbjct: 709 QILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTG 768 Query: 49431 ETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 E ++ G D++++ +KVK+IQERL +QSR KS Sbjct: 769 ERQVFGTDILREAEEKVKVIQERLRVAQSRHKS 801 Score = 273 bits (691), Expect = 2e-070 Identities = 155/394 (39%), Positives = 231/394 (58%), Gaps = 1/394 (0%) Frame = +2 Query: 9917 ELAKDVHRLVRLGVRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRV 10096 EL K+ RL LG+ G V A+ +L+ V+E DP +K+N++ + Sbjct: 451 ELCKEFERL-NLGI-----VGRGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKA 504 Query: 10097 LAFEQGGDGVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGL 10276 + F + G + ER+CVP+ +D I++++H T +S GS KMY+ LRE + + Sbjct: 505 IGFLEDEQGTVWLGERICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLRERFWWASM 564 Query: 10277 KKDIVKFVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIF 10456 K++I ++VA+ Q+VK EHQ+ GL + +++P WKWE I MDFI + H+SI+ Sbjct: 565 KREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIW 624 Query: 10457 VIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQK 10636 VIVDRLTK +HF+ V +T A+LY+ ++ LHG I+S+R + FT+ WK Q+ Sbjct: 625 VIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQE 684 Query: 10637 SQGSKLN*VLLFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSS 10813 GSKLN + + + + + + LE MLRAC +DF +WD N+P E+SYNNSY +S Sbjct: 685 EMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQAS 744 Query: 10814 IQMAPYEALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTD 10993 +QMAPYEALYGR+ R + + GE + G D++ + +K+KVIQER+ QS K D Sbjct: 745 LQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKVIQERLRVAQSRHKSYAD 804 Query: 10994 IRRRPLECEVDDWVYLKV*P*RVF*GLLIRGNLFP 11098 R R L E D+VYL+V P R +G L P Sbjct: 805 NRHRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAP 839 Score = 156 bits (391), Expect(3) = e-137 Identities = 73/152 (48%), Positives = 107/152 (70%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 +S+ADNR DL F+ GD+V+L+V+P++GV R KGKL+PR++GPY+I G+VAY+L+ Sbjct: 800 KSYADNRHRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIASRRGEVAYQLE 859 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LP L VH VFHVS L+KC+ P+ I+ ++V E+ +Y EKPI +L+ RR R + Sbjct: 860 LPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYVEKPIRILETNERRTRNRV 919 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + KV W N++ EE T E EDE+K+ +P+LF Sbjct: 920 IRFCKVQWSNHSEEESTWEREDELKSAHPHLF 951 Score = 81.5 bits (198), Expect = 1e-012 Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 1/167 (0%) Frame = -1 Query: 1130 SKFLKLNPPVFKVAQSE-DAYDFLVDCHELLHKMGIVERFGVEFVTYQFKGNAKMWWRSH 954 ++FL++ PPVF + +A D+L + L + ++ V F ++Q G A WW H Sbjct: 61 AEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWW-DH 119 Query: 953 VGCQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFFSLEQGRMSLTAYEAKFRASSRY 774 A P+TW F++ F + +IP + ++ EF SL QG S+T Y +F +RY Sbjct: 120 FRLNRTTAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARY 179 Query: 773 ATQLCFSPKERISRFVKGLR*ELRISALQVAATTKSFQEVVDFVIEVE 630 A + + +ER +F+ GL EL S + FQ++VD I E Sbjct: 180 APEDVRNDEERQEKFLGGLNDEL--SYPLMVGDYPDFQKLVDKAIRQE 225 Score = 76.5 bits (185), Expect(2) = 6e-017 Identities = 38/78 (48%), Positives = 51/78 (64%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPS 11232 ++GV RF KGKL PRF+G YKI R G Y+LELPQ LA VH VFH+S L K L P+ Sbjct: 825 LRGVHRFHTKGKLAPRFVGPYKIASRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPT 884 Query: 11233 LIVPTKIVGIKDNLSYEE 11286 + + ++++L+Y E Sbjct: 885 EEANIEQIEVQEDLTYVE 902 Score = 65.6 bits (157), Expect = 6e-008 Identities = 44/176 (25%), Positives = 83/176 (47%) Frame = -1 Query: 53429 LLTRLVAVHVHSHGLGVDHADRSDNLRARDFLSCNPTEFFGSRPQDDPQKFICQMQRTLR 53250 L+ ++ + G +H + L +FL P F + + ++ +++ L Sbjct: 35 LMNMMMQQFQNQQNQGNNHVPPQNKLA--EFLRVRPPVFSSTTNPVEASDWLHAIEKKLD 92 Query: 53249 ISKASETESVELATYRLRDVDINWYESWELSRGEGAPPMIWDEFVEAFQVHFLLPEMERA 53070 + + ++ E V A+++L W++ + L+R A P+ W EF AF+ + + Sbjct: 93 LLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTT-AEPITWLEFTAAFRKTHIPSGVVSL 151 Query: 53069 RVDRFLHLRKNGRSVREYSLEFD*LTRYAPTIVADMADRVHRYVMGLDRYLNYSCM 52902 + F L + RSV EY EF+ L RYAP V + +R +++ GL+ L+Y M Sbjct: 152 KKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLGGLNDELSYPLM 207 Score = 54.7 bits (129), Expect = 1e-004 Identities = 39/137 (28%), Positives = 65/137 (46%), Gaps = 1/137 (0%) Frame = +1 Query: 6901 SRVSEFLRMNTSSFTGTNTM*NLKNIVEEFKRIFEVIHVVDYERVELV*HELKCVAITWL 7080 ++++EFLR+ F+ T + + ++ +++ D E+V H+L A W Sbjct: 58 NKLAEFLRVRPPVFSSTTNPVEASDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWW 117 Query: 7081 DQWKEGRANNATHPWWACFEKAFFERFFPRELNEEKVREFLTFKLDCINVHEYGLKFPKL 7260 D ++ R A W F AF + P + K +EF + +V EY +F +L Sbjct: 118 DHFRLNRTT-AEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRL 176 Query: 7261 SRYAP*MV-NDMERRVSF 7311 +RYAP V ND ER+ F Sbjct: 177 ARYAPEDVRNDEERQEKF 194 Score = 39.5 bits (90), Expect(2) = 6e-017 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFESIENS 11450 I + R+ R + + KV W N EE+T+E E++++ + HLF S S Sbjct: 907 ILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLFASSSES 957 Score = 38.7 bits (88), Expect = 8.0 Identities = 25/79 (31%), Positives = 42/79 (52%), Gaps = 7/79 (8%) Frame = +3 Query: 42468 VQDSLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTP-------HNWKKISSKTIHRGRI 42626 +Q+ LR A R K+ AD L F+ G+ V +++TP H K++ + + Sbjct: 788 IQERLRVAQSRHKSYADNRHRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLAPRFV----- 842 Query: 42627 LK*DGPFDVIERAGEVSCMLKLSEIL 42704 GP+ + R GEV+ L+L + L Sbjct: 843 ----GPYKIASRRGEVAYQLELPQSL 864 Score = 29.0 bits (63), Expect(3) = e-137 Identities = 21/71 (29%), Positives = 37/71 (51%) Frame = -2 Query: 50458 DALSRKSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRH 50279 DALSRK + T+ + E+ ++ +RL+ LG+ G AK ++ID+V+ Sbjct: 432 DALSRKGYCNATEGRQLPLELCKEFERLN-LGIV-----GRGFVAALEAKPTLIDQVREA 485 Query: 50278 QYKDPILAQYR 50246 Q DP + + + Sbjct: 486 QINDPDIQEIK 496 >gb|AAD37020.1|AC007730_2 (AC007730) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 949 Score = 469 bits (1195), Expect(2) = e-135 Identities = 240/422 (56%), Positives = 300/422 (70%), Gaps = 2/422 (0%) Frame = -2 Query: 51880 ISYLKARKMVRKGYIYHLVRV--HDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIE 51707 IS ++A +M+ KG +L + ++ A A L+ +L+V+EF DVF Sbjct: 86 ISAIQAERMLGKGCEAYLATITTKEVGASAE-LKDILIVNEFSDVFAAVSGVPPDRSD-P 143 Query: 51706 FTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGS 51527 FTI++ T PI PYRMAPAE+ ELK+QL +LL KGFIRPS+SPWGAPVLFV+KKDGS Sbjct: 144 FTIELEPGTTPISKAPYRMAPAEMAELKKQLEELLAKGFIRPSSSPWGAPVLFVKKKDGS 203 Query: 51526 LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTA 51347 ++ I+Y+ LNKVTVKN+YPLPRID+L DQL GA+ FSKIDL S YH++ + D+ KTA Sbjct: 204 FRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTA 263 Query: 51346 FWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADH 51167 F TRYGH++F V+ FG+TNA A FM +MN VF+ FLD FVI+F+DDILV+S+S E H +H Sbjct: 264 FRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEH 323 Query: 51166 LRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTE 50987 LR VL L+ +L+A SK FW S+ FLGH+I G+ VD +KI ++K W RP TE Sbjct: 324 LRAVLERLREHELFAKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATE 383 Query: 50986 VRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNL 50807 +RSFL LA YYRRFV FA ++ PL RLT K F W++ CE+SF LK L AP L L Sbjct: 384 IRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVL 443 Query: 50806 PEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIW 50627 PE + Y +Y D S VGLGCVLMQ G VIAYASRQLRKHE NYPTHDL++ VV ALKIW Sbjct: 444 PEEGEPYTVYTDASIVGLGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFALKIW 503 Query: 50626 RHYL 50615 R YL Sbjct: 504 RSYL 507 Score = 321 bits (813), Expect(2) = e-110 Identities = 146/273 (53%), Positives = 201/273 (73%), Gaps = 1/273 (0%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ +++ E H + +SI+PGS KMY DL+ Y W GM+KD+A +VA+C CQ VK EHQ Sbjct: 551 LKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMRKDVARWVAKCPTCQLVKAEHQVP 610 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPR-TQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 GLLQ + I WKW+ I MDF+T LP + K +++WV++DRLTKSAHF+ + AE Sbjct: 611 SGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAISDKDGAEI 670 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 Y+ EI+RLHG+P SI+SDR +FT+ FW +FQK LGT+VNLST +HPQTDG+SERT Sbjct: 671 IAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQTDGQSERT 730 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDV 49435 IQTLEDMLRA ++D+ G+W+ +L LIEFAYNN + +SI M+PYEALYGR CR+P+ W V Sbjct: 731 IQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASIGMSPYEALYGRACRTPLCWTPV 790 Query: 49434 GETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 GE +L GP ++ + +++K ++ +L +Q R KS Sbjct: 791 GERRLFGPTIVDETTERMKFLKIKLKEAQDRQKS 824 Score = 239 bits (604), Expect(2) = 2e-075 Identities = 125/314 (39%), Positives = 198/314 (62%), Gaps = 2/314 (0%) Frame = +2 Query: 10103 FEQGGDGVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKK 10282 ++ +G + R+CVPN ++ I+ ++H + FS GS KMYR L+ Y G++K Sbjct: 529 YQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMRK 588 Query: 10283 DIVKFVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*S-RRQHNSIFV 10459 D+ ++VA Q VK EHQ GL +N+ + WKW+ I MDF+ + +HN+++V Sbjct: 589 DVARWVAKCPTCQLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWV 648 Query: 10460 IVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKS 10639 +VDRLTKS+HF+ +S + AE A+ YI ++ RLHG V I+S+R FT++ W +FQK+ Sbjct: 649 VVDRLTKSAHFMAISDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWNAFQKA 708 Query: 10640 QGSKLN*VLLFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSI 10816 G+++N + + + + + TI+TLE MLRACV+D+ NW+ + LIE++YNNS+ +SI Sbjct: 709 LGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLRLIEFAYNNSFQASI 768 Query: 10817 QMAPYEALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDI 10996 M+PYEALYGR R + VGE L G +V + +++K ++ ++ Q +K + Sbjct: 769 GMSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANK 828 Query: 10997 RRRPLECEVDDWVYLK 11044 RR+ LE +V D VYLK Sbjct: 829 RRKELEFQVGDLVYLK 844 Score = 116 bits (288), Expect(4) = 4e-058 Identities = 73/175 (41%), Positives = 91/175 (51%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APAAFM +M+ VF+ FLD F +S + E H LR VL+ LR E K SK Sbjct: 283 APAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHLRAVLERLREHELFAKLSK 342 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + V FLGH+IS +G+ VD EKI S +PRP I SFL LA YYRRFV F+ Sbjct: 343 FSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGLAGYYRRFVMSFA 402 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 S++ PLT++T F S+ CE F EL + VY AS Sbjct: 403 SMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVLPEEGEPYTVYTDAS 457 Score = 106 bits (263), Expect(2) = e-110 Identities = 56/127 (44%), Positives = 80/127 (62%), Gaps = 2/127 (1%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 +S+A+ RR +LEFQ+GD V+LK KG R + KLSPRY+GPY+++ +G VAY+LD Sbjct: 823 KSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLD 882 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQ--VIEEFSYEEKPIAMLDRQVRRLRT 48987 LP L V H VFHVS LRK + D ++D+ + E + E P+ ++DR + R Sbjct: 883 LPPKLNVFHNVFHVSQLRKYLSDQEE--SVEDIPPGLKENMTVEAWPVRIMDRMSKGTRG 940 Query: 48986 KDVASVKVL 48960 K +KVL Sbjct: 941 KSRDLLKVL 949 Score = 83.9 bits (204), Expect(4) = 4e-058 Identities = 46/102 (45%), Positives = 57/102 (55%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 K FI + SPWGA VLF++KK R+CIDY N VT K KYPL RI Sbjct: 180 KGFIRPSSSPWGAPVLFVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQW 239 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+L SG H++ + DV KT F RYGH+ F+V+ LT Sbjct: 240 FSKIDLASGYHQIPIEPTDVRKTAFRTRYGHFEFVVMPFGLT 281 Score = 72.2 bits (174), Expect(2) = 2e-075 Identities = 34/79 (43%), Positives = 50/79 (63%) Frame = +1 Query: 11047 LTMKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGD 11226 +T KG RF ++ KL PR++G YK+ +RVG Y+L+LP +L H VFH+S L K+L D Sbjct: 846 MTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNVFHNVFHVSQLRKYLSD 905 Query: 11227 PSLIVPTKIVGIKDNLSYE 11283 V G+K+N++ E Sbjct: 906 QEESVEDIPPGLKENMTVE 924 Score = 53.9 bits (127), Expect(4) = 4e-058 Identities = 26/46 (56%), Positives = 35/46 (75%), Gaps = 1/46 (2%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFL 9707 L C+L G VI Y S+ L +EKNYPTHD+E+A++VF+LKIW +L Sbjct: 461 LGCVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYL 507 Score = 41.4 bits (95), Expect(2) = e-135 Identities = 19/60 (31%), Positives = 35/60 (57%) Frame = -3 Query: 52119 GDSVIATRVYKNCSVVIYSRRTIADLIELTIIEFDIIMGMDWLAACYANVDYRGKIVRFQ 51940 G ++ TR+ + SVV+ ADLI + + + D+I+GMDWL ++D + ++F+ Sbjct: 7 GQAMYPTRLVRGISVVVNGVNMPADLIIVPLKKHDVILGMDWLGKYKGHIDCHRERIQFE 66 Score = 41.4 bits (95), Expect(4) = 4e-058 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 12/156 (7%) Frame = +1 Query: 8236 GESILAERVYHDCHVSTNHNMTMADLVELYIVEFDVILGMD*LHAL------HALYVSID 8397 G+++ R+ V N ADL+ + + + DVILGMD L H + + Sbjct: 7 GQAMYPTRLVRGISVVVNGVNMPADLIIVPLKKHDVILGMDWLGKYKGHIDCHRERIQFE 66 Query: 8398 CIK*VFKFQILNEP---IIIVVQQCLRVLFYLIPYGEEVSPKLVYLSLSRANDLSVEVPS 8568 + + KFQ + ++I Q R+L G+ YL+ ++ Sbjct: 67 RDEGMLKFQGIRTTSGSLVISAIQAERML------GKGCE---AYLATITTKEVGASA-E 116 Query: 8569 LQLVCIVGKFLD---DLFGVPPDREIDFGIQNIPDTRPISIP*YIMAP 8703 L+ + IV +F D + GVPPDR F I+ P T PIS Y MAP Sbjct: 117 LKDILIVNEFSDVFAAVSGVPPDRSDPFTIELEPGTTPISKAPYRMAP 164 Score = 36.4 bits (82), Expect(2) = 2.3 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%) Frame = +3 Query: 42480 LRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPH-------NWKKISSKTIHRGRILK*D 42638 L++A R K+ A++ LEFQVG+ V +K + + KK+S + + Sbjct: 815 LKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYV--------- 865 Query: 42639 GPFDVIERAGEVSCMLKLSEILKI 42710 GP+ VIER G V+ L L L + Sbjct: 866 GPYKVIERVGAVAYKLDLPPKLNV 889 Score = 22.7 bits (47), Expect(2) = 2.3 Identities = 9/19 (47%), Positives = 12/19 (62%) Frame = +1 Query: 42709 FHPTFHVSFLKPFHEDVED 42765 FH FHVS L+ + D E+ Sbjct: 890 FHNVFHVSQLRKYLSDQEE 908 >gb|AAD17356.1| (AF128395) contains similarity to retrovirus-related polyproteins [Arabidopsis thaliana] Length = 611 Score = 328 bits (831), Expect(3) = e-132 Identities = 151/281 (53%), Positives = 211/281 (74%), Gaps = 5/281 (1%) Frame = -3 Query: 50175 IVYTRYC-----RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQC 50011 +V+ R C LR++++ E H++ +SI+PG+TKMY DL+ Y W GMK+D+ +V +C Sbjct: 156 LVHGRVCVPKDKELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVGNWVEEC 215 Query: 50010 SNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAH 49831 CQ VKIEHQ SG LLQ + IP WKW+ I MDF+ GLP ++ K D+IWVI+DRLTKSAH Sbjct: 216 DVCQLVKIEHQVSGSLLQSLPIPEWKWDFITMDFVVGLPVSRTK-DAIWVIVDRLTKSAH 274 Query: 49830 FLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTT 49651 FL +R T A + YV EIV+LHGVP SI+SDR ++FT+ FWR+FQ +GT+V +ST Sbjct: 275 FLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTA 334 Query: 49650 FHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 +HPQTDG+SERTIQTLEDMLR ++D++G W DHL L+EFAYNN Y +SI MAP+E LYG Sbjct: 335 YHPQTDGQSERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPFEVLYG 394 Query: 49470 RKCRSPIGWFDVGETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 R CR+ + W VGE + G D +Q++ +++++++ + +Q+R +S Sbjct: 395 RPCRT-LCWTQVGERSIYGADYVQEITERIRVLKLNMKEAQNRQRS 439 Score = 259 bits (654), Expect(4) = 2e-081 Identities = 154/420 (36%), Positives = 246/420 (57%), Gaps = 8/420 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRL---- 9943 NL+ RRW++L DYD+ I YHPGKANVVT +L R +G + E L ++ L Sbjct: 48 NLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRKRVGAAPG-QSVETLVIEIGALRLCA 106 Query: 9944 ---VRLGVRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQG 10114 LG+ +D T+ L+S V+ ++D + + ++ Sbjct: 107 VAREPLGLEAVDQTD------------LLSRVQLAQEKDEGLIAASK----AEGFEYQFA 150 Query: 10115 GDGVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVK 10294 +G + R+CVP + I+ ++H++ FS G+ KMYR L+ Y G+K+D+ Sbjct: 151 ANGTILVHGRVCVPKDKELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVGN 210 Query: 10295 FVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRL 10474 +V Q VK+EHQ G L +++ +P WKW+ I MDF+ SR + ++I+VIVDRL Sbjct: 211 WVEECDVCQLVKIEHQVSGSLLQSLPIPEWKWDFITMDFVVGLPVSRTK-DAIWVIVDRL 269 Query: 10475 TKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKL 10654 TKS+HFL + T+ A AK Y+ ++ +LHG V I+S+R + FT+ W++FQ G+K+ Sbjct: 270 TKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKV 329 Query: 10655 N*VLLFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPY 10831 + + + + + TI+TLE MLR CV+D++ +W D++ L+E++YNNSY +SI MAP+ Sbjct: 330 QMSTAYHPQTDGQSERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPF 389 Query: 10832 EALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPL 11011 E LYGR R + +VGE + G D V +I ++++V++ M Q+ ++ D RR+ L Sbjct: 390 EVLYGRPCR-TLCWTQVGERSIYGADYVQEITERIRVLKLNMKEAQNRQRSYADKRRKEL 448 Query: 11012 ECEVDDWV 11035 E EV D V Sbjct: 449 EFEVGDSV 456 Score = 122 bits (303), Expect(3) = e-132 Identities = 70/158 (44%), Positives = 92/158 (57%) Frame = -2 Query: 50740 MQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIF 50561 MQ GKVIAY SRQL+KHE NYPTHDL++ V +TDHKSL+YIF Sbjct: 1 MQRGKVIAYGSRQLKKHEGNYPTHDLEMAAV------------------FTDHKSLKYIF 42 Query: 50560 KQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMREMVRDIQ 50381 Q EL LR RRW++L+ DYD++I YH GKANVV DALSRK +G+ E + Sbjct: 43 TQLELNLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRKRVGAAPGQSVETL-----VI 97 Query: 50380 RLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQYKD 50267 + +L +C E G+ V ++ ++ V+ Q KD Sbjct: 98 EIGALRLCAVAREPLGLE--AVDQTDLLSRVQLAQEKD 133 Score = 74.5 bits (180), Expect(3) = e-132 Identities = 48/152 (31%), Positives = 75/152 (48%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 RS+AD RR +LEF++GD VS V R +++ +G VA+ L+ Sbjct: 438 RSYADKRRKELEFEVGD----SVSQDGHVARSEQR----------------VGPVAFRLE 477 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 L + H VFHVSMLRKC+ V + + E +P+ +L+R+++ LR K Sbjct: 478 LSDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKK 537 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + +KVL + E T E E +K ++ F Sbjct: 538 IPLIKVLRNCDGVTEETWEPEARLKARFKKWF 569 Score = 45.3 bits (105), Expect(4) = 2e-081 Identities = 25/58 (43%), Positives = 33/58 (56%) Frame = +3 Query: 9591 GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL*YVFT 9764 GKVI Y S+ L +E NYPTHD+E+A+ +FTD+KSL Y+FT Sbjct: 4 GKVIAYGSRQLKKHEGNYPTHDLEMAA------------------VFTDHKSLKYIFT 43 Score = 36.0 bits (81), Expect(4) = 2e-081 Identities = 20/69 (28%), Positives = 38/69 (54%), Gaps = 4/69 (5%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFESIENS----DEGDK 11465 + + ++++LR KK+ +KVL V E T+E E ++ R+ FE + S +G+ Sbjct: 525 VLERRIKELRRKKIPLIKVLRNCDGVTEETWEPEARLKARFKKWFEKKDVSGLFQTQGES 584 Query: 11466 FFSLNFIRLCIHR 11504 L +R+ + R Sbjct: 585 LLGLIVVRIILLR 597 Score = 34.0 bits (76), Expect(4) = 2e-081 Identities = 18/53 (33%), Positives = 28/53 (51%) Frame = +1 Query: 11125 KRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPSLIVPTKIVGIKDNLSYE 11283 +RVG + LEL + A H VFH+SML K L ++ ++ N++ E Sbjct: 467 QRVGPVAFRLELSDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLE 519 >emb|CAB77942.1| (AL161507) putative reverse transcriptase [Arabidopsis thaliana] Length = 611 Score = 328 bits (831), Expect(3) = e-132 Identities = 151/281 (53%), Positives = 211/281 (74%), Gaps = 5/281 (1%) Frame = -3 Query: 50175 IVYTRYC-----RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQC 50011 +V+ R C LR++++ E H++ +SI+PG+TKMY DL+ Y W GMK+D+ +V +C Sbjct: 156 LVHGRVCVPKDKELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVGNWVEEC 215 Query: 50010 SNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAH 49831 CQ VKIEHQ SG LLQ + IP WKW+ I MDF+ GLP ++ K D+IWVI+DRLTKSAH Sbjct: 216 DVCQLVKIEHQVSGSLLQSLPIPEWKWDFITMDFVVGLPVSRTK-DAIWVIVDRLTKSAH 274 Query: 49830 FLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTT 49651 FL +R T A + YV EIV+LHGVP SI+SDR ++FT+ FWR+FQ +GT+V +ST Sbjct: 275 FLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKVQMSTA 334 Query: 49650 FHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 +HPQTDG+SERTIQTLEDMLR ++D++G W DHL L+EFAYNN Y +SI MAP+E LYG Sbjct: 335 YHPQTDGQSERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPFEVLYG 394 Query: 49470 RKCRSPIGWFDVGETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 R CR+ + W VGE + G D +Q++ +++++++ + +Q+R +S Sbjct: 395 RPCRT-LCWTQVGERSIYGADYVQEITERIRVLKLNMKEAQNRQRS 439 Score = 259 bits (654), Expect(4) = 2e-081 Identities = 154/420 (36%), Positives = 246/420 (57%), Gaps = 8/420 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRL---- 9943 NL+ RRW++L DYD+ I YHPGKANVVT +L R +G + E L ++ L Sbjct: 48 NLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRKRVGAAPG-QSVETLVIEIGALRLCA 106 Query: 9944 ---VRLGVRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQG 10114 LG+ +D T+ L+S V+ ++D + + ++ Sbjct: 107 VAREPLGLEAVDQTD------------LLSRVQLAQEKDEGLIAASK----AEGFEYQFA 150 Query: 10115 GDGVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVK 10294 +G + R+CVP + I+ ++H++ FS G+ KMYR L+ Y G+K+D+ Sbjct: 151 ANGTILVHGRVCVPKDKELRQEILSEAHASMFSIHPGATKMYRDLKRYYQWVGMKRDVGN 210 Query: 10295 FVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRL 10474 +V Q VK+EHQ G L +++ +P WKW+ I MDF+ SR + ++I+VIVDRL Sbjct: 211 WVEECDVCQLVKIEHQVSGSLLQSLPIPEWKWDFITMDFVVGLPVSRTK-DAIWVIVDRL 269 Query: 10475 TKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKL 10654 TKS+HFL + T+ A AK Y+ ++ +LHG V I+S+R + FT+ W++FQ G+K+ Sbjct: 270 TKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQAEMGTKV 329 Query: 10655 N*VLLFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPY 10831 + + + + + TI+TLE MLR CV+D++ +W D++ L+E++YNNSY +SI MAP+ Sbjct: 330 QMSTAYHPQTDGQSERTIQTLEDMLRMCVLDWRGHWADHLSLVEFAYNNSYQASIGMAPF 389 Query: 10832 EALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPL 11011 E LYGR R + +VGE + G D V +I ++++V++ M Q+ ++ D RR+ L Sbjct: 390 EVLYGRPCR-TLCWTQVGERSIYGADYVQEITERIRVLKLNMKEAQNRQRSYADKRRKEL 448 Query: 11012 ECEVDDWV 11035 E EV D V Sbjct: 449 EFEVGDSV 456 Score = 122 bits (303), Expect(3) = e-132 Identities = 70/158 (44%), Positives = 92/158 (57%) Frame = -2 Query: 50740 MQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIF 50561 MQ GKVIAY SRQL+KHE NYPTHDL++ V +TDHKSL+YIF Sbjct: 1 MQRGKVIAYGSRQLKKHEGNYPTHDLEMAAV------------------FTDHKSLKYIF 42 Query: 50560 KQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMREMVRDIQ 50381 Q EL LR RRW++L+ DYD++I YH GKANVV DALSRK +G+ E + Sbjct: 43 TQLELNLRLRRWMKLVADYDLEIAYHPGKANVVTDALSRKRVGAAPGQSVETL-----VI 97 Query: 50380 RLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQYKD 50267 + +L +C E G+ V ++ ++ V+ Q KD Sbjct: 98 EIGALRLCAVAREPLGLE--AVDQTDLLSRVQLAQEKD 133 Score = 74.5 bits (180), Expect(3) = e-132 Identities = 48/152 (31%), Positives = 75/152 (48%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 RS+AD RR +LEF++GD VS V R +++ +G VA+ L+ Sbjct: 438 RSYADKRRKELEFEVGD----SVSQDGHVARSEQR----------------VGPVAFRLE 477 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 L + H VFHVSMLRKC+ V + + E +P+ +L+R+++ LR K Sbjct: 478 LSDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKELRRKK 537 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + +KVL + E T E E +K ++ F Sbjct: 538 IPLIKVLRNCDGVTEETWEPEARLKARFKKWF 569 Score = 45.3 bits (105), Expect(4) = 2e-081 Identities = 25/58 (43%), Positives = 33/58 (56%) Frame = +3 Query: 9591 GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL*YVFT 9764 GKVI Y S+ L +E NYPTHD+E+A+ +FTD+KSL Y+FT Sbjct: 4 GKVIAYGSRQLKKHEGNYPTHDLEMAA------------------VFTDHKSLKYIFT 43 Score = 36.0 bits (81), Expect(4) = 2e-081 Identities = 20/69 (28%), Positives = 38/69 (54%), Gaps = 4/69 (5%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFESIENS----DEGDK 11465 + + ++++LR KK+ +KVL V E T+E E ++ R+ FE + S +G+ Sbjct: 525 VLERRIKELRRKKIPLIKVLRNCDGVTEETWEPEARLKARFKKWFEKKDVSGLFQTQGES 584 Query: 11466 FFSLNFIRLCIHR 11504 L +R+ + R Sbjct: 585 LLGLIVVRIILLR 597 Score = 34.0 bits (76), Expect(4) = 2e-081 Identities = 18/53 (33%), Positives = 28/53 (51%) Frame = +1 Query: 11125 KRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPSLIVPTKIVGIKDNLSYE 11283 +RVG + LEL + A H VFH+SML K L ++ ++ N++ E Sbjct: 467 QRVGPVAFRLELSDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLE 519 >gb|AAA33420.1| (L35053) endonuclease [Pyricularia grisea] Length = 1199 Score = 323 bits (819), Expect(2) = e-130 Identities = 192/539 (35%), Positives = 293/539 (53%), Gaps = 8/539 (1%) Frame = -2 Query: 51808 NAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXK-IEFTIDVLLDTQPIFIPPYRMAPAELK 51632 N PTL + EF DVF + + I ++ P F P Y M+ EL Sbjct: 199 NRNGPTLPET--IREFADVFSPQEAEKLPPHRPSDHHIPLIEGKTPPFGPLYAMSREELI 256 Query: 51631 ELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRID 51452 LKE L L+KGFIRPS+S +PVLFV+K+ G L+ ++Y+ LN +TVK+RYPLP + Sbjct: 257 ALKEWLTAELKKGFIRPSSSSVASPVLFVKKQGGGLRFCVDYRALNNITVKDRYPLPLVR 316 Query: 51451 DLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFM 51272 + + L G K FSKID+ S+++ +R+++ + TAF TR+G Y+ V+ FG+T A A F Sbjct: 317 ETLNNLAGMKFFSKIDIVSAFNNIRIKKGEEYLTAFRTRFGLYESLVMPFGLTGAPATFQ 376 Query: 51271 DLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLT 51092 +N + +LD+F ++DDIL+YSR+ EH +HL+ VL L+ LYA +KCEF++T Sbjct: 377 RYINDSLREYLDVFCTAYLDDILIYSRTRTEHEEHLKLVLEALRKAGLYANAAKCEFFVT 436 Query: 51091 SLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPL 50912 FLG ++G +G+++D +KI AV W P T+V++FL +YRRF+ F+ I APL Sbjct: 437 ETKFLGLLVGVEGVKMDPEKITAVLDWQTPKKLTDVQAFLGFGNFYRRFIRDFSKIVAPL 496 Query: 50911 IRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQH 50732 RLT+K F W +ACE +F LLK K T AP L + ++ D S +L Q+ Sbjct: 497 TRLTKKDVAFEWNSACETAFRLLKRKFTEAPVLAHFDWEKDVILETDASDYVSAGILSQY 556 Query: 50731 G-----KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFH--VDIYTDHKSL 50573 G + +A+ S++ E NY +D +L ++ + WR L G V I TDH++L Sbjct: 557 GDDGILRPVAFFSKKHTATECNYEIYDKELLAIIRCFEEWRPELEGTSSPVQIITDHRNL 616 Query: 50572 QYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMREMV 50393 +Y K L RQ RW E L ++ I Y GK DAL+R+S + ++ Sbjct: 617 EYFTTTKMLNRRQARWAEFLSRFNFRITYRPGKQGAKPDALTRRSEDMPEEGDERLKHQT 676 Query: 50392 RDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVKRHQYKDPILAQYRDAALQKENTHL 50213 + + + +L + + +I+ + DPI +A + H Sbjct: 677 QVVLKEHNLPARPTRLQPIIRQNKPLLPRHLIELLDAGYESDPITQSALEALRTGADRHP 736 Query: 50212 RIHLTEC 50192 ++ L EC Sbjct: 737 KLQLAEC 743 Score = 170 bits (427), Expect(2) = e-130 Identities = 84/227 (37%), Positives = 131/227 (57%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ +++ H + + +PG K Y L Y+W GM ++ +V +C C+ + + Sbjct: 764 LKAEILRRCHDSPVAGHPGKAKTYDLLSREYYWPGMLHYVSLWVKKCQTCRRINPSREGH 823 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 GLL+ + P W+ ++MDFIT LP++ D+I V++DRLTK HF+P + T +AED Sbjct: 824 QGLLRPLPTPERSWQHLSMDFITHLPQSNGH-DAILVVVDRLTKMRHFVPCKGTCNAEDT 882 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 LY+ + +LHG+P +I+SDRG QF + FW+ L LST HP+TDG++ER Sbjct: 883 ANLYLHHVWKLHGLPLTIVSDRGTQFVSKFWKHLTTRLKIDSLLSTAHHPETDGQTERFN 942 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 +LE LRA + + W+ LPL EF N+H + +P+ A YG Sbjct: 943 ASLEQYLRAYVAYLQDDWESWLPLAEFTANSHKSETTGTSPFYATYG 989 Score = 115 bits (286), Expect = 5e-023 Identities = 101/360 (28%), Positives = 164/360 (45%), Gaps = 16/360 (4%) Frame = +2 Query: 9767 KIANLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSI----LKEKEELAKDV 9934 K+ N +Q RW E ++ I Y PGK +L R S LK + ++ Sbjct: 623 KMLNRRQARWAEFLSRFNFRITYRPGKQGAKPDALTRRSEDMPEEGDERLKHQTQVVLKE 682 Query: 9935 HRLVRLGVRIMDSTEGGIVVTNGA--ESSLVS*VKEK*DQDPIFLVLKENVKN------Q 10090 H L R+ I+ N L+ + + DPI E ++ + Sbjct: 683 HNLPARPTRLQP-----IIRQNKPLLPRHLIELLDAGYESDPITQSALEALRTGADRHPK 737 Query: 10091 RVLAFEQGGDGVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLK 10270 LA + G L Y+ RL VP+ + + I+ + H + + G K Y LL Y Sbjct: 738 LQLAECEERSGYLYYRNRLYVPDSNNLKAEILRRCHDSPVAGHPGKAKTYDLLSREYYWP 797 Query: 10271 GLKKDIVKFVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNS 10450 G+ + +V +++ + GL + + P W+ ++MDFI S H++ Sbjct: 798 GMLHYVSLWVKKCQTCRRINPSREGHQGLLRPLPTPERSWQHLSMDFITHLPQSNG-HDA 856 Query: 10451 IFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSF 10630 I V+VDRLTK HF+ T AED A LY+ V +LHG + I+S+R F ++ WK Sbjct: 857 ILVVVDRLTKMRHFVPCKGTCNAEDTANLYLHHVWKLHGLPLTIVSDRGTQFVSKFWKHL 916 Query: 10631 QKSQGSKLN*VLLFILKEVEKQCTIK----TLEYMLRACVIDFKVNWDDNMPLIEYSYNN 10798 + K++ LL E + +LE LRA V + +W+ +PL E++ N+ Sbjct: 917 --TTRLKID-SLLSTAHHPETDGQTERFNASLEQYLRAYVAYLQDDWESWLPLAEFTANS 973 Query: 10799 SYHSSIQMAPYEALYG 10846 + +P+ A YG Sbjct: 974 HKSETTGTSPFYATYG 989 Score = 85.4 bits (208), Expect(2) = 8e-023 Identities = 48/152 (31%), Positives = 79/152 (51%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F ++ + +LD+F YS + +H L++VL+ LR +K Sbjct: 371 APATFQRYINDSLREYLDVFCTAYLDDILIYSRTRTEHEEHLKLVLEALRKAGLYANAAK 430 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF + FLG ++ EG+++D EKI + + P ++ +FL +YRRF+ FS Sbjct: 431 CEFFVTETKFLGLLVGVEGVKMDPEKITAVLDWQTPKKLTDVQAFLGFGNFYRRFIRDFS 490 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKR 9513 I +PLT++T V F+ + CE FR L ++ Sbjct: 491 KIVAPLTRLTKKDVAFEWNSACETAFRLLKRK 522 Score = 50.4 bits (118), Expect(2) = 8e-023 Identities = 31/102 (30%), Positives = 51/102 (49%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 K FI + S + VLF++K+ LR C+DY NN+T K +YPL + Sbjct: 268 KGFIRPSSSSVASPVLFVKKQGGGLRFCVDYRALNNITVKDRYPLPLVRETLNNLAGMKF 327 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I++ S + +++++ + T F R+G Y LV+ LT Sbjct: 328 FSKIDIVSAFNNIRIKKGEEYLTAFRTRFGLYESLVMPFGLT 369 Score = 42.6 bits (98), Expect = 0.54 Identities = 29/92 (31%), Positives = 49/92 (52%), Gaps = 3/92 (3%) Frame = -1 Query: 49298 IGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLEVVHPVFHV 49119 +G +V+L + + + KL + +GP++I I AY LDLPS + VHPVF++ Sbjct: 1052 VGQYVWLDA---RNIQTARPQKKLDWKNLGPFRISEVISPYAYRLDLPSSMR-VHPVFNI 1107 Query: 49118 SMLRKCIGDP---SRVFPIDDVQVIEEFSYEEKPI 49023 + L+ +P + P ++V E YE + I Sbjct: 1108 NRLKPADVEPLPGQQPAPPPHLEVEGEREYEVEEI 1142 >dbj|BAA90794.1| (AP001168) Similar to 22 kDa kafirin cluster; Ty3-Gypsy type (AF061282) [Oryza sativa] Length = 607 Score = 334 bits (848), Expect(2) = e-126 Identities = 151/273 (55%), Positives = 199/273 (72%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 LR ++ E H + YSI+PGSTKMY D++ +WW GMK+D+AE+VA C CQ VK EHQ+ Sbjct: 184 LRDLILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRP 243 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 GLLQ + IP WKWE I MDFIT LPRT DSIWVI+DRLTKSAHF+PV+TT+ + Sbjct: 244 AGLLQPLPIPEWKWEEIGMDFITDLPRTPSGYDSIWVIVDRLTKSAHFVPVKTTFDGKKL 303 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 LY+ +V G P I+SDRG QFT+ FW+ + LGT +N ST +HP TDG++ER Sbjct: 304 AELYMTHVVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPHTDGQTERVN 363 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVG 49432 Q LEDMLRA +DF+G+WD LP EF+YNN Y +SI+M+P EA++GRKCR+P+ W +VG Sbjct: 364 QILEDMLRACALDFEGTWDRCLPYAEFSYNNSYQASIKMSPNEAMFGRKCRTPLCWNEVG 423 Query: 49431 ETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 E + GPD+++ ++VKLI+ERL +QSR K+ Sbjct: 424 EALVFGPDILKSAEEQVKLIRERLKTAQSRQKN 456 Score = 255 bits (645), Expect(4) = 8e-098 Identities = 151/428 (35%), Positives = 234/428 (54%), Gaps = 2/428 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSL-RRLSMGCTSILKEKEELAKDVHRLVRL 9952 N++QRRWLEL KDYD+ I YHPGKANVV +L + I +++ L +++ +L Sbjct: 101 NMRQRRWLELIKDYDLGIHYHPGKANVVADALSHKAYCNIAQIRPDQDRLCRELEKL--- 157 Query: 9953 GVRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLK 10132 R+ + G + Sbjct: 158 ----------------------------------------------RLTVVQSDDQGTVW 171 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 R+CVP +DLI++++H + +S GS KMY+ ++ + G+K+D+ ++VA+ Sbjct: 172 CGPRICVPAKKELRDLILKEAHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCD 231 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHF 10492 Q+VK EHQR GL + + +P WKWE I MDFI + ++SI+VIVDRLTKS+HF Sbjct: 232 ICQRVKAEHQRPAGLLQPLPIPEWKWEEIGMDFITDLPRTPSGYDSIWVIVDRLTKSAHF 291 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + V +T + A+LY+ V G I+S+R FT++ WK ++ G+ LN + Sbjct: 292 VPVKTTFDGKKLAELYMTHVVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAY 351 Query: 10673 -ILKEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGR 10849 + + + + LE MLRAC +DF+ WD +P E+SYNNSY +SI+M+P EA++GR Sbjct: 352 HPHTDGQTERVNQILEDMLRACALDFEGTWDRCLPYAEFSYNNSYQASIKMSPNEAMFGR 411 Query: 10850 RGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVDD 11029 + R + +VGE+ + G D++ +++K+I+ER+ T QS +K D RRR LE E D Sbjct: 412 KCRTPLCWNEVGEALVFGPDILKSAEEQVKLIRERLKTAQSRQKNYADNRRRDLEFEKGD 471 Query: 11030 WVYLKV*P*R 11059 VYL+V P R Sbjct: 472 HVYLRVSPLR 481 Score = 200 bits (504), Expect = 1e-048 Identities = 97/171 (56%), Positives = 124/171 (71%) Frame = -2 Query: 50845 LKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHD 50666 +K +LT AP L LP+ + I+ D S GLGCVLMQ KV+AYASRQLR HE NYPTHD Sbjct: 1 MKKRLTTAPVLTLPDIRKDFEIFYDASRQGLGCVLMQERKVVAYASRQLRPHEVNYPTHD 60 Query: 50665 LKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILY 50486 L+L VVHALKIWRHYL G ++YTDHKSL+YIF Q EL +RQRRWLEL+KDYD+ I Y Sbjct: 61 LELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQTELNMRQRRWLELIKDYDLGIHY 120 Query: 50485 HLGKANVVVDALSRKSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSG 50333 H GKANVV DALS K+ ++ ++P+ + R++++L + + S+D G Sbjct: 121 HPGKANVVADALSHKAYCNIAQIRPDQDRLCRELEKLR---LTVVQSDDQG 168 Score = 145 bits (363), Expect(2) = e-126 Identities = 68/153 (44%), Positives = 102/153 (66%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 +++ADNRR DLEF+ GD V+L+VSP++G+ R KL+PRYIGPY I G+VAY+L+ Sbjct: 455 KNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSSKLAPRYIGPYLITARRGEVAYQLE 514 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LP L VH VFHVS L+KC+ P P+ ++++ +Y+E+PI +L+ R+ R K Sbjct: 515 LPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELERNLTYKERPIKVLEETERQTRRKT 574 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLFP 48882 + KV W N++ +E T E ED ++ ++P L P Sbjct: 575 IKFYKVQWSNHSEDEATWEREDLLRAEFPELLP 607 Score = 74.1 bits (179), Expect(4) = 8e-098 Identities = 39/79 (49%), Positives = 54/79 (67%), Gaps = 1/79 (1%) Frame = +3 Query: 9528 DFDIAFGYSCIYSVLSCIL*NG-KVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHF 9704 DF+I Y L C+L KV+ Y S+ L +E NYPTHD+ELA++V +LKIW H+ Sbjct: 19 DFEIF--YDASRQGLGCVLMQERKVVAYASRQLRPHEVNYPTHDLELAAVVHALKIWRHY 76 Query: 9705 LYGIRVDIFTDNKSL*YVFT 9764 L G R +++TD+KSL Y+FT Sbjct: 77 LIGNRCEVYTDHKSLKYIFT 96 Score = 68.7 bits (165), Expect(4) = 8e-098 Identities = 36/78 (46%), Positives = 48/78 (61%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPS 11232 ++G+ RF KL PR+IG Y I R G Y+LELP+ LA VH VFH+S L K L P Sbjct: 480 LRGMRRFGMSSKLAPRYIGPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPE 539 Query: 11233 LIVPTKIVGIKDNLSYEE 11286 VP + ++ NL+Y+E Sbjct: 540 EQVPLGNIELERNLTYKE 557 Score = 40.2 bits (92), Expect = 2.7 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 13/153 (8%) Frame = +3 Query: 42468 VQDSLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKK---ISSKTIHRGRILK*D 42638 +++ L+ A R KN AD LEF+ G++V ++++P + +SSK R Sbjct: 443 IRERLKTAQSRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSSKLAPRYI----- 497 Query: 42639 GPFDVIERAGEVSCMLKLSE-------ILKISPYISCEFS*TFS*GC*GSKNISCQECSL 42797 GP+ + R GEV+ L+L E + +S C + + L Sbjct: 498 GPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRV--------PEEQVPLGNIEL 549 Query: 42798 VVQTQFEEQIEKILDQ---RNLGQTKKNFLVQ*KGKSVSDAAWEKK 42926 ++E+ K+L++ + +T K + VQ S +A WE++ Sbjct: 550 ERNLTYKERPIKVLEETERQTRRKTIKFYKVQWSNHSEDEATWERE 595 Score = 30.9 bits (68), Expect(4) = 8e-098 Identities = 14/38 (36%), Positives = 21/38 (54%) Frame = +3 Query: 11316 RKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHL 11429 R+ R K + KV W N +EAT+E E+ +R + L Sbjct: 568 RQTRRKTIKFYKVQWSNHSEDEATWEREDLLRAEFPEL 605 >gb|AAF18642.1|AC006228_13 (AC006228) F5J5.15 [Arabidopsis thaliana] Length = 1617 Score = 453 bits (1154), Expect = e-125 Identities = 235/454 (51%), Positives = 295/454 (64%) Frame = -2 Query: 51790 LQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLR 51611 + + VV EF DVF FTI++ L T P+ PYRM PAE+ ELK+QL Sbjct: 547 VSDIWVVQEFEDVFQSLQGLPPSRSD-PFTIELELGTAPLSKTPYRMVPAEIAELKKQLE 605 Query: 51610 DLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQ 51431 DLL KGFIRPSTS WGAP LN+VT+KN+YPLPRID+L DQL+ Sbjct: 606 DLLGKGFIRPSTSRWGAP------------------GLNRVTLKNKYPLPRIDELLDQLR 647 Query: 51430 GAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVF 51251 GA CFSKIDL YH+ + EAD+ KTAF TRYGH++F V+ FG+TNA M LMN VF Sbjct: 648 GATCFSKIDLTPGYHQFPIAEADVRKTAFRTRYGHFEFVVMPFGLTNAPTALMRLMNSVF 707 Query: 51250 KPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGH 51071 + FLD FVI+F+DDILVY +S EEH HLR V+ L+ QKL+A KC FW + FLGH Sbjct: 708 QEFLDEFVIIFIDDILVYFKSPEEHEVHLRRVMEKLREQKLFAKLGKCSFWQREMDFLGH 767 Query: 51070 IIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKA 50891 I+ A+G+ VD ++IEA++ W +PT TE+RSFL LA YYRRF + ++ Sbjct: 768 IVSAEGVLVDPEQIEAIRDWPKPTNATEIRSFLGLAGYYRRFE-----------GVCEEG 816 Query: 50890 AKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYA 50711 F F + + +++ + Y++Y D S VGLGCVLMQ GKVI YA Sbjct: 817 YSFCVVTGVRGGFRESEGDVDEYTSVSIARA-EPYMVYTDASRVGLGCVLMQRGKVIVYA 875 Query: 50710 SRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQR 50531 SRQLRKHE NYPTHDL++ ++ ALKIW YLYG V ++TDHKSL+ IF Q EL LRQR Sbjct: 876 SRQLRKHEGNYPTHDLEMAAIIFALKIWGSYLYGGKVQVFTDHKSLKDIFTQPELNLRQR 935 Query: 50530 RWLELLKDYDVDILYHLGKANVVVDALSRKSMGS 50429 RW+EL+ DYD++I YH GK NVV DALSRK +G+ Sbjct: 936 RWMELVADYDLEIAYHPGKTNVVADALSRKRVGA 969 Score = 251 bits (635), Expect(2) = 1e-080 Identities = 126/281 (44%), Positives = 177/281 (62%), Gaps = 5/281 (1%) Frame = -3 Query: 50175 IVYTRYC-----RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQC 50011 +V+ R C LRR+++ E H++ +SI+PG+TKMY DL+ Y W GMK+D+A +V +C Sbjct: 1009 LVHERVCLPKDEELRREILSEAHASMFSIHPGATKMYRDLKRHYQWVGMKRDVANWVTEC 1068 Query: 50010 SNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAH 49831 CQ VK EHQ GGLLQ + I WK T A Sbjct: 1069 DVCQLVKAEHQVPGGLLQSLPISEWK----------------------------KTDGAA 1100 Query: 49830 FLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTT 49651 LP + YV EIV+LHGVP SI+S R ++FT+ FWR+FQ +GT+V +ST Sbjct: 1101 VLPKK-----------YVSEIVKLHGVPVSILSHRDSKFTSAFWRAFQVEMGTKVQMSTA 1149 Query: 49650 FHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 +HPQTDG+SERTIQTLEDML+ ++D+ G W DHL L++FAYNN Y +SI MAP+EALYG Sbjct: 1150 YHPQTDGQSERTIQTLEDMLQMCVLDWGGHWADHLSLVKFAYNNSYQASIGMAPFEALYG 1209 Query: 49470 RKCRSPIGWFDVGETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 R CR+ + W VGE + G D +Q+ +++++++ + +Q R +S Sbjct: 1210 RPCRTLLCWTQVGEKSIYGADYVQETTERIRVLKLNMKEAQDRQRS 1255 Score = 196 bits (492), Expect(4) = 5e-073 Identities = 126/416 (30%), Positives = 205/416 (48%), Gaps = 1/416 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 NL+QRRW+EL DYD+ I YHPGK NVV +L R +G + E L ++ L Sbjct: 931 NLRQRRWMELVADYDLEIAYHPGKTNVVADALSRKRVGAAPG-QSVEALVSEIGAL---- 985 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKY 10135 + +V +E +K + V ++ +G + Sbjct: 986 --------------------------------RLCVVAREPLKLEAV---DRAANGTILV 1010 Query: 10136 QERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSN 10315 ER+C+P + + I+ ++H++ FS G+ KMYR L+ Y G+K+D+ +V Sbjct: 1011 HERVCLPKDEELRREILSEAHASMFSIHPGATKMYRDLKRHYQWVGMKRDVANWVTECDV 1070 Query: 10316 YQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFL 10495 Q VK EHQ GGL +++ + WK Sbjct: 1071 CQLVKAEHQVPGGLLQSLPISEWK------------------------------------ 1094 Query: 10496 QVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFI 10675 T+ A K Y+ ++ +LHG V I+S+R + FT+ W++FQ G+K+ + Sbjct: 1095 ---KTDGAAVLPKKYVSEIVKLHGVPVSILSHRDSKFTSAFWRAFQVEMGTKVQMSTAYH 1151 Query: 10676 LK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGRR 10852 + + + + TI+TLE ML+ CV+D+ +W D++ L++++YNNSY +SI MAP+EALYGR Sbjct: 1152 PQTDGQSERTIQTLEDMLQMCVLDWGGHWADHLSLVKFAYNNSYQASIGMAPFEALYGRP 1211 Query: 10853 GRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEV 11023 R + +VGE + G D V + ++++V++ M Q ++ D RRR LE EV Sbjct: 1212 CRTLLCWTQVGEKSIYGADYVQETTERIRVLKLNMKEAQDRQRSYADKRRRELEFEV 1268 Score = 85.8 bits (209), Expect(2) = 4e-023 Identities = 49/115 (42%), Positives = 65/115 (55%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP A M LM+ VF+ FLD F Y + E+H LR V++ LR ++ K K Sbjct: 695 APTALMRLMNSVFQEFLDEFVIIFIDDILVYFKSPEEHEVHLRRVMEKLREQKLFAKLGK 754 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRF 9402 F + + FLGHI+S EG+ VD E+IE+ +P+P I SFL LA YYRRF Sbjct: 755 CSFWQREMDFLGHIVSAEGVLVDPEQIEAIRDWPKPTNATEIRSFLGLAGYYRRF 809 Score = 77.6 bits (188), Expect(2) = 1e-080 Identities = 46/152 (30%), Positives = 71/152 (46%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 RS+AD RR +LEF++G I + +G VAY L+ Sbjct: 1254 RSYADKRRRELEFEVGT-----------------------ECISRWPYCERVGPVAYRLE 1290 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 LP + H VFHVSMLRKC+ V + + E +P+ +L+R+++ +R K Sbjct: 1291 LPDVMRAFHNVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPVRVLERRIKEVRRKK 1350 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + +KVLW + E T E E +K ++ F Sbjct: 1351 IPMIKVLWDCDGVTEETWEPEARIKARFKKWF 1382 Score = 74.5 bits (180), Expect(4) = 5e-073 Identities = 36/65 (55%), Positives = 50/65 (76%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L GKVI Y S+ L +E NYPTHD+E+A+++F+LKIW +LYG +V +FTD+KS Sbjct: 861 LGCVLMQRGKVIVYASRQLRKHEGNYPTHDLEMAAIIFALKIWGSYLYGGKVQVFTDHKS 920 Query: 9747 L*YVFT 9764 L +FT Sbjct: 921 LKDIFT 926 Score = 51.2 bits (120), Expect(2) = 4e-023 Identities = 36/105 (34%), Positives = 44/105 (41%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + K FI + S WGA L N VT K KYPL RI Sbjct: 607 LLGKGFIRPSTSRWGAPGL------------------NRVTLKNKYPLPRIDELLDQLRG 648 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+L G H+ + E DV KT F RYGH+ F+V+ LT Sbjct: 649 ATCFSKIDLTPGYHQFPIAEADVRKTAFRTRYGHFEFVVMPFGLT 693 Score = 49.2 bits (115), Expect = 0.005 Identities = 29/88 (32%), Positives = 45/88 (50%) Frame = -1 Query: 923 MTWASFSSLFMEKYIPRTLRDRRRDEFFSLEQGRMSLTAYEAKFRASSRYATQLCFSPKE 744 M+W F + F KY P+ DR F L +G +S+ Y +F+ YA + + Sbjct: 229 MSWTDFVAEFNAKYFPQEALDRMEARFLELTKGELSVREYGREFKRLLVYAGRGMEDDQA 288 Query: 743 RISRFVKGLR*ELRISALQVAATTKSFQ 660 ++ RF++GLR +LR QV A + S Q Sbjct: 289 QMRRFLRGLRPDLR---RQVVAVSPSVQ 313 Score = 46.1 bits (107), Expect = 0.047 Identities = 33/99 (33%), Positives = 45/99 (45%) Frame = -1 Query: 53156 RGEGAPPMIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYAPT 52977 RG M W +FV F + E RFL L K SVREY EF L YA Sbjct: 222 RGRRQADMSWTDFVAEFNAKYFPQEALDRMEARFLELTKGELSVREYGREFKRLLVYAGR 281 Query: 52976 IVADMADRVHRYVMGLDRYLNYSCMAVTLQPSMDIARVQ 52860 + D ++ R++ GL L +AV+ PS+ ++Q Sbjct: 282 GMEDDQAQMRRFLRGLRPDLRRQVVAVS--PSVQPKKIQ 318 Score = 38.7 bits (88), Expect(4) = 5e-073 Identities = 21/60 (35%), Positives = 31/60 (51%) Frame = +1 Query: 11104 IGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPSLIVPTKIVGIKDNLSYE 11283 I + +RVG Y LELP + A H VFH+SML K L ++ ++ N++ E Sbjct: 1273 ISRWPYCERVGPVAYRLELPDVMRAFHNVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLE 1332 Score = 36.7 bits (83), Expect(4) = 5e-073 Identities = 15/46 (32%), Positives = 28/46 (60%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFE 11435 + + +++++R KK+ +KVLW V E T+E E ++ R+ FE Sbjct: 1338 VLERRIKEVRRKKIPMIKVLWDCDGVTEETWEPEARIKARFKKWFE 1383 >gb|AAF79348.1|AC007887_7 (AC007887) F15O4.13 [Arabidopsis thaliana] Length = 1887 Score = 393 bits (1000), Expect = e-107 Identities = 201/424 (47%), Positives = 282/424 (66%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 IE ID + P YR P E KEL++Q+ +L+E+G IR S SP PVL V KKD Sbjct: 898 IEHQIDFVPGASLPNRPAYRTNPVETKELEKQVTELMERGHIRESMSPCAVPVLLVPKKD 957 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 GS +M ++ + +N +TVK R+P+PR+DD+ D+L G+ FSK+DL+S YH++R++E D K Sbjct: 958 GSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSSIFSKVDLKSGYHQIRMKEGDEWK 1017 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 TAF T G Y++ V+ FG+TNA + FM LMN V + F+ FVIV+ DDILVYS+S EEH Sbjct: 1018 TAFKTIQGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGRFVIVYFDDILVYSKSLEEHV 1077 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 +HL+ VL VL+ +KLYA KC F +L FLG ++ DG++VD +K++A++ W P + Sbjct: 1078 EHLKMVLEVLRKEKLYANLKKCTFGTDNLVFLGFVVSTDGVKVDEEKVKAIREWPSPKSV 1137 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 EVRSF LA +YRRFV+ F+ ++APL + +K F W A E +F LK+KLT AP L Sbjct: 1138 GEVRSFHGLAGFYRRFVKDFSTLAAPLTEVIKKNVGFKWEQAQEDAFQALKEKLTHAPVL 1197 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALK 50633 +LP+ + I CD SGVG+G VLMQ K IAY S +L NYPT+D +L +V AL+ Sbjct: 1198 SLPDFLKTFEIECDASGVGIGVVLMQDKKPIAYFSEKLGGATLNYPTYDKELYALVRALQ 1257 Query: 50632 IWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDA 50453 +HYL+ I+TDH+SL+++ Q++L R RW+E ++ + I Y GK NVV DA Sbjct: 1258 TGQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKGKDNVVADA 1317 Query: 50452 LSRK 50441 LSR+ Sbjct: 1318 LSRR 1321 Score = 180 bits (453), Expect(2) = 2e-047 Identities = 95/258 (36%), Positives = 152/258 (58%), Gaps = 6/258 (2%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 LR + E H + G +K ++ + W MK+D+ +C C+ K + Q Sbjct: 1383 LRELFIREAHGGGLMGHFGVSKTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQPH 1442 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 G L + IP+ W I+MDF+ GLPRT+ DSI+V++DR +K AHF+P T A Sbjct: 1443 G-LYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAIHI 1501 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 L+ RE+VRLHG+P +I+SDR +F + FW++ LGT++ STT HPQTDG++E Sbjct: 1502 ANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVN 1561 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVG 49432 +TL +LRA I +W+D LP +EFAYN+ HS+ + +P++ +YG +P+ + Sbjct: 1562 RTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLP 1621 Query: 49431 ETKLIGPD------MIQQVVDKVK 49378 ++ + D ++QQ+ ++ K Sbjct: 1622 LSERVSLDGKKKAELVQQIHEQAK 1645 Score = 127 bits (316), Expect = 1e-026 Identities = 93/309 (30%), Positives = 161/309 (52%), Gaps = 13/309 (4%) Frame = +2 Query: 10118 DGVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKF 10297 DG L Y RLC+PN ++L + ++H G K +++++ + +K+D+ + Sbjct: 1367 DGFLFYDNRLCIPN-SSLRELFIREAHGGGLMGHFGVSKTIKVMQDHFHWPHMKRDVERI 1425 Query: 10298 VAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLT 10477 +Q K + Q GL + +P W I+MDF+ +R +SIFV+VDR + Sbjct: 1426 CERCPTCKQAKAKSQP-HGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFS 1484 Query: 10478 KSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN 10657 K +HF+ T+ A A L+ ++V RLHG I+S+R F + WK+ G+K Sbjct: 1485 KMAHFIPCHKTDDAIHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTK-- 1542 Query: 10658 *VLLFIL-----KEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQM 10822 LLF + + + +TL +LRA + W+D +P +E++YN+S HS+ + Sbjct: 1543 --LLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKF 1600 Query: 10823 APYEALYGRRGRYHIRLFKVGESGLIGLD------VVHQIMDKLKV-IQERMMTTQSCKK 10981 +P++ +YG + L + S + LD +V QI ++ K I+E+ T Q K Sbjct: 1601 SPFQIVYGFNPTTPLDLMPLPLSERVSLDGKKKAELVQQIHEQAKKNIEEK--TKQYAKH 1658 Query: 10982 FNTDIRRRPLECEVD-DWVYLK 11044 N R+ + E D W++L+ Sbjct: 1659 ANKS-RKEVIFNEGDLVWIHLR 1679 Score = 96.3 bits (236), Expect(2) = 2e-027 Identities = 55/175 (31%), Positives = 91/175 (51%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ FM LM+ V + F+ F YS + E+H L++VL+ LR ++ K Sbjct: 1039 APSTFMRLMNHVLRAFIGRFVIVYFDDILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKK 1098 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F +VFLG ++S +G++VD+EK+++ +P P + SF LA +YRRFV FS Sbjct: 1099 CTFGTDNLVFLGFVVSTDGVKVDEEKVKAIREWPSPKSVGEVRSFHGLAGFYRRFVKDFS 1158 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 ++++PLT++ V F+ + E F+ L ++ F + C AS Sbjct: 1159 TLAAPLTEVIKKNVGFKWEQAQEDAFQALKEKLTHAPVLSLPDFLKTFEIECDAS 1213 Score = 54.7 bits (129), Expect(2) = 2e-027 Identities = 31/105 (29%), Positives = 55/105 (51%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + ++ I +++SP VL + KK R+C+D NN+T K ++P+ R+ Sbjct: 933 LMERGHIRESMSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHG 992 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 ++L+SG H+++++E D KT F G Y +LV+ LT Sbjct: 993 SSIFSKVDLKSGYHQIRMKEGDEWKTAFKTIQGLYEWLVMPFGLT 1037 Score = 37.5 bits (85), Expect(2) = 2e-047 Identities = 27/81 (33%), Positives = 42/81 (51%) Frame = -1 Query: 49334 HADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLP 49155 HA+ R ++ F GD V++ + K +RK KL R GP+++++ I AY LDL Sbjct: 1658 HANKSRKEVIFNEGDLVWIHLR--KERFPKERKSKLMSRIDGPFKVLKRINNNAYSLDLQ 1715 Query: 49154 SDLEVVHPVFHVSMLRKCIGD 49092 V + F+V+ L I D Sbjct: 1716 GKYNVSNS-FNVADLFPFIAD 1735 >gb|AAD15321.1| (AC005142) putative reverse transcriptase [Arabidopsis thaliana] Length = 839 Score = 389 bits (988), Expect = e-105 Identities = 184/304 (60%), Positives = 226/304 (73%) Frame = -2 Query: 51370 EADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSR 51191 EAD+ KTAF TRYGH++F V+ FG+TNA A FM LMN VF+ FLD FVI+F+DDILVYS+ Sbjct: 518 EADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSK 577 Query: 51190 SEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTW 51011 S EEH HLR V+ L+ QKL+A SKC FW + FLGHI+ A+G+ VD +KIEA++ W Sbjct: 578 SPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDW 637 Query: 51010 TRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKL 50831 RPT TE+RSFL LA YYRRF++ FA ++ P+ +LT K F W+ CE F LK+ L Sbjct: 638 PRPTNATEIRSFLGLAGYYRRFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEML 697 Query: 50830 TIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEI 50651 T P L LPE + Y++Y D SGVGLGC LMQ GKVIAYASRQLRKHE NYPTHDL++ Sbjct: 698 TSTPVLALPEHGEPYMVYTDASGVGLGCALMQRGKVIAYASRQLRKHEGNYPTHDLEMAA 757 Query: 50650 VVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKA 50471 V+ ALKIWR YLYG V ++TDHKSL+YIF Q EL LRQRRW+EL+ DYD++I YHL + Sbjct: 758 VIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHLAEM 817 Query: 50470 NVVV 50459 V Sbjct: 818 GTKV 821 Score = 120 bits (297), Expect(3) = 4e-046 Identities = 72/175 (41%), Positives = 95/175 (54%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APAAFM LM+ VF+ FLD F YS + E+H LR V++ LR ++ K SK Sbjct: 545 APAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSK 604 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + + FLGHI+S EG+ VD EKIE+ +PRP I SFL LA YYRRF+ F+ Sbjct: 605 CSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGLAGYYRRFIKGFA 664 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 S++ P+TK+T V F S CE F L + ++VY AS Sbjct: 665 SMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGEPYMVYTDAS 719 Score = 77.3 bits (187), Expect(3) = 4e-046 Identities = 36/65 (55%), Positives = 51/65 (78%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSC-IL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C ++ GKVI Y S+ L +E NYPTHD+E+A+++F+LKIW +LYG +V +FTD+KS Sbjct: 723 LGCALMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKS 782 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 783 LKYIFT 788 Score = 69.9 bits (168), Expect = 3e-009 Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 1/216 (0%) Frame = -1 Query: 1277 PIFSAPAPQVPEVQHAASVAPRMDASLEISTFPRLTTGPIMTSDQHELFSKFLKLNPPVF 1098 P+ + AP+V EVQ A+VA + + L + + ++ F Sbjct: 116 PVQAPVAPRVVEVQQRAAVAEEVPSYLR-------------------MMKQLQRIGTEYF 156 Query: 1097 KVAQS-EDAYDFLVDCHELLHKMGIVERFGVEFVTYQFKGNAKMWWRSHVGCQPAQAPPM 921 S E+A + + V+ + +G+A +WWRS V + QA M Sbjct: 157 SGGTSPEEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGDAHLWWRS-VTARRRQAD-M 214 Query: 920 TWASFSSLFMEKYIPRTLRDRRRDEFFSLEQGRMSLTAYEAKFRASSRYATQLCFSPKER 741 +WA F + F KY PR DR F L QG S+ Y+ KF YA + + + Sbjct: 215 SWADFMAEFNAKYFPREALDRMEARFLELTQGVRSVREYDRKFNRLLVYAGRGMEDDQAQ 274 Query: 740 ISRFVKGLR*ELRISALQVAATTKSFQEVVDFVIEVE 630 + RF++GLR LR+ TK+ +V+ EVE Sbjct: 275 MRRFLRGLRPNLRVRCRVSQYATKA--ALVETAAEVE 309 Score = 50.8 bits (119), Expect = 0.002 Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 1/165 (0%) Frame = -1 Query: 53321 TEFF-GSRPQDDPQKFICQMQRTLRISKASETESVELATYRLRDVDINWYESWELSRGEG 53145 TE+F G ++ + Q++R S+ V+L + L W+ S R + Sbjct: 153 TEYFSGGTSPEEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGDAHLWWRSVTARRRQA 212 Query: 53144 APPMIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYAPTIVAD 52965 M W +F+ F + E RFL L + RSVREY +F+ L YA + D Sbjct: 213 --DMSWADFMAEFNAKYFPREALDRMEARFLELTQGVRSVREYDRKFNRLLVYAGRGMED 270 Query: 52964 MADRVHRYVMGLDRYLNYSCMAVTLQPSMDIARVQAYAQGVEDRHR 52827 ++ R++ GL L C Q + A V+ A+ ED R Sbjct: 271 DQAQMRRFLRGLRPNLRVRCR--VSQYATKAALVETAAEVEEDLQR 314 Score = 46.5 bits (108), Expect = 0.036 Identities = 48/152 (31%), Positives = 70/152 (45%), Gaps = 23/152 (15%) Frame = -2 Query: 51790 LQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLR 51611 + + VV EF VF FTI++ T P+ PYRMAPA++ ELK+QL Sbjct: 455 VSDIRVVQEFQYVFQSLQGLPPSRSD-PFTIELEPKTAPLSKAPYRMAPAKMAELKKQLE 513 Query: 51610 DLLEKGFIRPS------------TSPWG---APVLFVRKKDGSLQMSIEYKQLNKVTVKN 51476 DLL + +R + P+G AP F+R + Q ++ Sbjct: 514 DLLAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLD----------- 562 Query: 51475 RYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVRE--------ADIPKTAFWTR 51335 + + IDD+ +SK H RV E A + K +FW R Sbjct: 563 EFVIIFIDDIL-------VYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQR 610 Score = 42.6 bits (98), Expect = 0.54 Identities = 17/23 (73%), Positives = 22/23 (94%) Frame = -3 Query: 49680 LGTQVNLSTTFHPQTDGKSERTI 49612 +GT+V +STT+HPQTDG+SERTI Sbjct: 817 MGTKVQMSTTYHPQTDGQSERTI 839 Score = 37.5 bits (85), Expect(3) = 4e-046 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYH 9838 NL+QRRW+EL DYD+ I YH Sbjct: 793 NLRQRRWMELVADYDLEIAYH 813 >emb|CAB77850.1| (AL161497) putative reverse transcriptase [Arabidopsis thaliana] Length = 839 Score = 389 bits (988), Expect = e-105 Identities = 184/304 (60%), Positives = 226/304 (73%) Frame = -2 Query: 51370 EADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSR 51191 EAD+ KTAF TRYGH++F V+ FG+TNA A FM LMN VF+ FLD FVI+F+DDILVYS+ Sbjct: 518 EADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSK 577 Query: 51190 SEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTW 51011 S EEH HLR V+ L+ QKL+A SKC FW + FLGHI+ A+G+ VD +KIEA++ W Sbjct: 578 SPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDW 637 Query: 51010 TRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKL 50831 RPT TE+RSFL LA YYRRF++ FA ++ P+ +LT K F W+ CE F LK+ L Sbjct: 638 PRPTNATEIRSFLGLAGYYRRFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEML 697 Query: 50830 TIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEI 50651 T P L LPE + Y++Y D SGVGLGC LMQ GKVIAYASRQLRKHE NYPTHDL++ Sbjct: 698 TSTPVLALPEHGEPYMVYTDASGVGLGCALMQRGKVIAYASRQLRKHEGNYPTHDLEMAA 757 Query: 50650 VVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKA 50471 V+ ALKIWR YLYG V ++TDHKSL+YIF Q EL LRQRRW+EL+ DYD++I YHL + Sbjct: 758 VIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYDLEIAYHLAEM 817 Query: 50470 NVVV 50459 V Sbjct: 818 GTKV 821 Score = 120 bits (297), Expect(3) = 4e-046 Identities = 72/175 (41%), Positives = 95/175 (54%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APAAFM LM+ VF+ FLD F YS + E+H LR V++ LR ++ K SK Sbjct: 545 APAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHLRRVMEKLREQKLFAKLSK 604 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + + FLGHI+S EG+ VD EKIE+ +PRP I SFL LA YYRRF+ F+ Sbjct: 605 CSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEIRSFLGLAGYYRRFIKGFA 664 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 S++ P+TK+T V F S CE F L + ++VY AS Sbjct: 665 SMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALPEHGEPYMVYTDAS 719 Score = 77.3 bits (187), Expect(3) = 4e-046 Identities = 36/65 (55%), Positives = 51/65 (78%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSC-IL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C ++ GKVI Y S+ L +E NYPTHD+E+A+++F+LKIW +LYG +V +FTD+KS Sbjct: 723 LGCALMQRGKVIAYASRQLRKHEGNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKS 782 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 783 LKYIFT 788 Score = 69.9 bits (168), Expect = 3e-009 Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 1/216 (0%) Frame = -1 Query: 1277 PIFSAPAPQVPEVQHAASVAPRMDASLEISTFPRLTTGPIMTSDQHELFSKFLKLNPPVF 1098 P+ + AP+V EVQ A+VA + + L + + ++ F Sbjct: 116 PVQAPVAPRVVEVQQRAAVAEEVPSYLR-------------------MMKQLQRIGTEYF 156 Query: 1097 KVAQS-EDAYDFLVDCHELLHKMGIVERFGVEFVTYQFKGNAKMWWRSHVGCQPAQAPPM 921 S E+A + + V+ + +G+A +WWRS V + QA M Sbjct: 157 SGGTSPEEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGDAHLWWRS-VTARRRQAD-M 214 Query: 920 TWASFSSLFMEKYIPRTLRDRRRDEFFSLEQGRMSLTAYEAKFRASSRYATQLCFSPKER 741 +WA F + F KY PR DR F L QG S+ Y+ KF YA + + + Sbjct: 215 SWADFMAEFNAKYFPREALDRMEARFLELTQGVRSVREYDRKFNRLLVYAGRGMEDDQAQ 274 Query: 740 ISRFVKGLR*ELRISALQVAATTKSFQEVVDFVIEVE 630 + RF++GLR LR+ TK+ +V+ EVE Sbjct: 275 MRRFLRGLRPNLRVRCRVSQYATKA--ALVETAAEVE 309 Score = 50.8 bits (119), Expect = 0.002 Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 1/165 (0%) Frame = -1 Query: 53321 TEFF-GSRPQDDPQKFICQMQRTLRISKASETESVELATYRLRDVDINWYESWELSRGEG 53145 TE+F G ++ + Q++R S+ V+L + L W+ S R + Sbjct: 153 TEYFSGGTSPEEADSWRSQVERNFGSSRCPAEYRVDLTVHFLEGDAHLWWRSVTARRRQA 212 Query: 53144 APPMIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYAPTIVAD 52965 M W +F+ F + E RFL L + RSVREY +F+ L YA + D Sbjct: 213 --DMSWADFMAEFNAKYFPREALDRMEARFLELTQGVRSVREYDRKFNRLLVYAGRGMED 270 Query: 52964 MADRVHRYVMGLDRYLNYSCMAVTLQPSMDIARVQAYAQGVEDRHR 52827 ++ R++ GL L C Q + A V+ A+ ED R Sbjct: 271 DQAQMRRFLRGLRPNLRVRCR--VSQYATKAALVETAAEVEEDLQR 314 Score = 46.5 bits (108), Expect = 0.036 Identities = 48/152 (31%), Positives = 70/152 (45%), Gaps = 23/152 (15%) Frame = -2 Query: 51790 LQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLR 51611 + + VV EF VF FTI++ T P+ PYRMAPA++ ELK+QL Sbjct: 455 VSDIRVVQEFQYVFQSLQGLPPSRSD-PFTIELEPKTAPLSKAPYRMAPAKMAELKKQLE 513 Query: 51610 DLLEKGFIRPS------------TSPWG---APVLFVRKKDGSLQMSIEYKQLNKVTVKN 51476 DLL + +R + P+G AP F+R + Q ++ Sbjct: 514 DLLAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLD----------- 562 Query: 51475 RYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVRE--------ADIPKTAFWTR 51335 + + IDD+ +SK H RV E A + K +FW R Sbjct: 563 EFVIIFIDDIL-------VYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQR 610 Score = 42.6 bits (98), Expect = 0.54 Identities = 17/23 (73%), Positives = 22/23 (94%) Frame = -3 Query: 49680 LGTQVNLSTTFHPQTDGKSERTI 49612 +GT+V +STT+HPQTDG+SERTI Sbjct: 817 MGTKVQMSTTYHPQTDGQSERTI 839 Score = 37.5 bits (85), Expect(3) = 4e-046 Identities = 14/21 (66%), Positives = 17/21 (80%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYH 9838 NL+QRRW+EL DYD+ I YH Sbjct: 793 NLRQRRWMELVADYDLEIAYH 813 >dbj|BAA89466.1| (AB033235) gag-pol polyprotein [Oryza sativa] Length = 1587 Score = 386 bits (981), Expect = e-104 Identities = 191/424 (45%), Positives = 278/424 (65%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 IE ID++ PYR P E KE++ Q+++LL+KG++R S SP PVL V KKD Sbjct: 734 IEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKD 793 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 GS +M ++ + +N +T++ R+P+PR+DD+ D+L G+ FSKIDLRS YH++R++ D K Sbjct: 794 GSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWK 853 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 TAF T++G Y++ V+ FG+TNA + FM LMN V + F+ FV+V+ DDIL+YSRS E+H Sbjct: 854 TAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHH 913 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 HLR V L+ +L+ KC F ++FLG+++ GI VD K+EA+ +W PTT Sbjct: 914 GHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTI 973 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 T+VRSFL LA +YRRFV+ F+ I+APL LT++ F W A +F LKDKLT AP L Sbjct: 974 TQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLL 1033 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALK 50633 LP+ + + CD SG+GLG VL+Q GK +AY S +L NY T+D +L +V L+ Sbjct: 1034 QLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLE 1093 Query: 50632 IWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDA 50453 W+HYL+ I++DH+SL++I Q + R +W+E ++ + I + GK NV+ DA Sbjct: 1094 TWQHYLWPKEFVIHSDHESLKHIRSQAKHNRRHAKWVEFIESFPYVIKHKKGKENVIADA 1153 Query: 50452 LSRK 50441 LSR+ Sbjct: 1154 LSRR 1157 Score = 186 bits (468), Expect = 2e-044 Identities = 96/230 (41%), Positives = 139/230 (59%) Frame = -3 Query: 50139 VMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLL 49960 ++ E H + G KM L ++W ++D+ FVA+C+ CQ K GL Sbjct: 1224 LLQEAHGGGLMGHFGVKKMEDILADHFFWPKKRRDVERFVARCTTCQKAK-SRLNPHGLY 1282 Query: 49959 QEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLY 49780 + +P+ WE I+MDF+ GLPRT+ DSI+V++DR +K AHF+P + A L+ Sbjct: 1283 MPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLF 1342 Query: 49779 VREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLE 49600 REIVRLHGVP +I+SDR +F ++FWR+ LGT++ STT HPQTDG++E +TL Sbjct: 1343 FREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLS 1402 Query: 49599 DMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPI 49450 MLRA + W++ LP +EFAYN HS+ + P+E +YG R+PI Sbjct: 1403 TMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPI 1452 Score = 122 bits (303), Expect(4) = 4e-064 Identities = 104/389 (26%), Positives = 181/389 (45%), Gaps = 8/389 (2%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSL-RRLSMGCTSILKEKEELAKDVHRLVRL 9952 N + +W+E + + I + GK NV+ +L RR +M L +L Sbjct: 1123 NRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAM------------------LSQL 1164 Query: 9953 GVRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLK 10132 +I G E+ +KE+ D F + N K R +G + Sbjct: 1165 DFKIF-----------GLET-----IKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVF 1208 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 +LC+P H L+++++H G KM +L + + ++D+ +FVA + Sbjct: 1209 RANKLCIPASSVHM-LLLQEAHGGGLMGHFGVKKMEDILADHFFWPKKRRDVERFVARCT 1267 Query: 10313 NYQQVKVEHQRLG--GLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSS 10486 Q+ K RL GL + +P WE I+MDF+ +++ +SIFV+VDR +K + Sbjct: 1268 TCQKAK---SRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMA 1324 Query: 10487 HFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VL 10666 HF+ ++ A A L+ +++ RLHG I+S+R F + W++ G+K L Sbjct: 1325 HFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTK----L 1380 Query: 10667 LFIL-----KEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPY 10831 LF + + + +TL MLRA + W++ +P +E++YN S HS+ + P+ Sbjct: 1381 LFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPF 1440 Query: 10832 EALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKV 10942 E +YG R I L + S + D ++ LK+ Sbjct: 1441 EIVYGLLPRAPIDLLPLPTSERVNFDAKYRAELMLKL 1477 Score = 93.6 bits (229), Expect(4) = 4e-064 Identities = 53/136 (38%), Positives = 75/136 (54%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ FM LM+ V + F+ F YS + EDH LR V LR+ K Sbjct: 875 APSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEK 934 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 FC V FLG++++ +GI VD+ K+E+ S+P P + SFL LA +YRRFV FS Sbjct: 935 CTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFS 994 Query: 9418 SISSPLTKIT*TKVQF 9465 +I++PL ++T V F Sbjct: 995 TIAAPLHELTKRNVTF 1010 Score = 59.3 bits (141), Expect(4) = 4e-064 Identities = 32/105 (30%), Positives = 57/105 (53%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + DK ++ +++SP VL + KK R+C+D NN+T + ++P+ R+ Sbjct: 769 LLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSG 828 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+LRSG H+++++ D KT F ++G Y +LV+ LT Sbjct: 829 SLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLT 873 Score = 42.6 bits (98), Expect = 0.54 Identities = 26/71 (36%), Positives = 43/71 (59%) Frame = -1 Query: 49304 FQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLEVVHPVF 49125 F+ GD V+L + K RK KL PR GP+++++ I AY+L+LP+D V P F Sbjct: 1505 FEPGDLVWLHLR--KDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADFG-VSPTF 1561 Query: 49124 HVSMLRKCIGD 49092 +++ L+ +G+ Sbjct: 1562 NIADLKPYLGE 1572 Score = 40.6 bits (93), Expect(4) = 4e-064 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Frame = +3 Query: 9528 DFDIAFGYSCIYSVLSC---IL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWC 9698 DF+ F C S + +L GK + Y S+ L NY T+D EL +LV +L+ W Sbjct: 1037 DFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQ 1096 Query: 9699 HFLYGIRVDIFTDNKSL*YV 9758 H+L+ I +D++SL ++ Sbjct: 1097 HYLWPKEFVIHSDHESLKHI 1116 Score = 39.9 bits (91), Expect = 3.5 Identities = 21/53 (39%), Positives = 34/53 (63%), Gaps = 2/53 (3%) Frame = +1 Query: 11068 RFVN--KGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGD 11226 RF N K KL+PR G +K+ +++ + Y+LELP + V F+I+ L +LG+ Sbjct: 1519 RFPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADF-GVSPTFNIADLKPYLGE 1572 >gb|AAG12877.1|AC069473_8 (AC069473) gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana] Length = 1499 Score = 382 bits (970), Expect = e-103 Identities = 204/465 (43%), Positives = 292/465 (61%), Gaps = 2/465 (0%) Frame = -2 Query: 51775 VVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEK 51596 V++E+PD+F K I +L + P+ PYR + + E+ + + DLL Sbjct: 568 VLNEYPDIFIEPTALPPFREKHNHKIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTN 627 Query: 51595 GFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCF 51416 G ++ S+SP+ +PV+ V+KKDG+ ++ ++Y++LN +TVK+ +P+P I+DL D+L GA F Sbjct: 628 GTVQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIF 687 Query: 51415 SKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLD 51236 SKIDLR+ YH+VR+ DI KTAF T GH+++ V+ FG+TNA A F LMN +FKPFL Sbjct: 688 SKIDLRAGYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLR 747 Query: 51235 MFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGAD 51056 FV+VF DDILVYS S EEH HL+ V V++ KL+A SKC F + + +LGH I A Sbjct: 748 KFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQ 807 Query: 51055 GIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*W 50876 GI D KI+AVK W +PTT ++R FL LA YYRRFV F +I+ PL LT K F W Sbjct: 808 GIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFGVIAGPLHALT-KTDAFEW 866 Query: 50875 TNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLR 50696 T +++F LK L AP L+LP +V+ D G G+G VLMQ G +AY SRQL+ Sbjct: 867 TAVAQQAFEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQEGHPLAYISRQLK 926 Query: 50695 KHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLEL 50516 + + ++ +L V+ A++ WRHYL H I TD +SL+Y+ +Q+ Q++WL Sbjct: 927 GKQLHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPK 986 Query: 50515 LKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMRE--MVRDIQ 50381 L ++D +I Y GK NVV DALSR + + + E +++DIQ Sbjct: 987 LLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVVECDLLKDIQ 1033 Score = 170 bits (427), Expect(2) = 1e-061 Identities = 95/263 (36%), Positives = 146/263 (55%), Gaps = 1/263 (0%) Frame = -3 Query: 50124 HSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEI 49945 H + + G + ++ L++W GM KDI ++ C CQ K + S GLLQ + I Sbjct: 1089 HGSGVGGHSGRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPLPI 1148 Query: 49944 PTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIV 49765 P W ++MDFI GLP + K I V++DRL+K+AHF+ + YSA Y+ + Sbjct: 1149 PDTIWSEVSMDFIEGLPVSGGK-TVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVF 1207 Query: 49764 RLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRA 49585 +LHG PTSI+SDR FT+ FWR F G + L++ +HPQ+DG++E + LE LR Sbjct: 1208 KLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRC 1267 Query: 49584 SIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVGETKL-IGPD 49408 D W L L E+ YN +YHSS +M P+E +YG+ + + GE+K+ + Sbjct: 1268 MCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLP-GESKVAVVAR 1326 Query: 49407 MIQQVVDKVKLIQERLLASQSR*K 49336 +Q+ D + ++ L+ +Q R K Sbjct: 1327 SLQEREDMLLFLKFHLMRAQHRMK 1350 Score = 136 bits (340), Expect(3) = 1e-038 Identities = 111/425 (26%), Positives = 190/425 (44%), Gaps = 7/425 (1%) Frame = +2 Query: 9785 QRRWLELPKDYDMSILYHPGKANVVTHSLRR------LSMGCTSILKEKEELAKDVHRLV 9946 Q++WL ++D I Y GK NVV +L R L M T + + +L KD+ Sbjct: 980 QQQWLPKLLEFDYEIQYRQGKENVVADALSRVEGSEVLHMAMTVV---ECDLLKDIQAGY 1036 Query: 9947 RLGVRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGV 10126 ++ D I L+ + +++ ++ Q + Sbjct: 1037 ANDSQLQD----------------------------IITALQRDPDSKKYFSWSQN---I 1065 Query: 10127 LKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAM 10306 L+ + ++ VP D ++ I+ H + SG ++ ++ ++ KG+ KDI ++ Sbjct: 1066 LRRKSKIVVPANDNIKNTILLWLHGSGVGGHSGRDVTHQRVKGLFYWKGMIKDIQAYIRS 1125 Query: 10307 FSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSS 10486 QQ K + GL + + +P W ++MDFI+ S + I V+VDRL+K++ Sbjct: 1126 CGTCQQCKSDPAASPGLLQPLPIPDTIWSEVSMDFIEGLPVSGGK-TVIMVVVDRLSKAA 1184 Query: 10487 HFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VL 10666 HF+ +S A A Y+ V +LHG I+S+R FT++ W+ F QG L Sbjct: 1185 HFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTS 1244 Query: 10667 LF-ILKEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALY 10843 + + + + + LE LR D W + L EY YN +YHSS +M P+E +Y Sbjct: 1245 AYHPQSDGQTEVVNRCLETYLRCMCHDRPQLWSKWLALAEYWYNTNYHSSSRMTPFEIVY 1304 Query: 10844 GRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEV 11023 G+ H+ + + + D L ++ +M Q K D R E E+ Sbjct: 1305 GQVPPVHLPYLPGESKVAVVARSLQEREDMLLFLKFHLMRAQHRMKQFADQHRTEREFEI 1364 Query: 11024 DDWVYLKV*P*R 11059 D+VY+K+ P R Sbjct: 1365 GDYVYVKLQPYR 1376 Score = 95.2 bits (233), Expect(2) = 1e-061 Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 3/149 (2%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKG---VMRLDRKGKLSPRYIGPYQIVRWIGKVAY 49170 + AD R + EF+IGD+V++K+ P + VMR ++K LSP+Y GPY+I+ G+VAY Sbjct: 1350 KQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQK--LSPKYFGPYKIIDRCGEVAY 1407 Query: 49169 ELDLPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLR 48990 +L LPS VHPVFHVS L+ +G+ S + V + +E+ P +++R++ + Sbjct: 1408 KLALPS-YSQVHPVFHVSQLKVLVGNVSTTVHLPSVM---QDVFEKVPEKVVERKMVNRQ 1463 Query: 48989 TKDVASVKVLWQNNNREEMTREVEDEMKNKYP 48894 K V V V W N EE T E +++ +P Sbjct: 1464 GKAVTKVLVKWSNEPLEEATWEFLFDLQKTFP 1495 Score = 92.8 bits (227), Expect(2) = 4e-027 Identities = 53/132 (40%), Positives = 71/132 (53%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F LM+ +FKPFL F YS + E+H L+ V + +R + K SK Sbjct: 730 APATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSK 789 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + V +LGH IS +GI D KI++ +P+P K + FL LA YYRRFV F Sbjct: 790 CAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRGFLGLAGYYRRFVRSFG 849 Query: 9418 SISSPLTKIT*T 9453 I+ PL +T T Sbjct: 850 VIAGPLHALTKT 861 Score = 57.4 bits (136), Expect(2) = 4e-027 Identities = 29/94 (30%), Positives = 50/94 (52%) Frame = +2 Query: 8774 SPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRS 8953 SP+ + V+ ++KK R+C+DY + N +T K +P+ I I+LR+ Sbjct: 635 SPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRA 694 Query: 8954 GCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 G H++++ D+ KT F GH+ +LV+ LT Sbjct: 695 GYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLT 728 Score = 52.3 bits (123), Expect = 6e-004 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 4/147 (2%) Frame = +3 Query: 42480 LRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKISSKTIHRGRILK*DGPFDVIE 42659 L +A RMK ADQH EF++G+ V +KL P+ + + + ++ K GP+ +I+ Sbjct: 1342 LMRAQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRA-NQKLSPKYFGPYKIID 1400 Query: 42660 RAGEVSCMLKLSEILKISPYISCEFS*TFS*GC*GSKNISCQ-ECSLVVQTQFEEQIEKI 42836 R GEV+ L L ++ P N+S V+Q FE+ EK+ Sbjct: 1401 RCGEVAYKLALPSYSQVHPVFHVSQLKVL------VGNVSTTVHLPSVMQDVFEKVPEKV 1454 Query: 42837 LDQRNL---GQTKKNFLVQ*KGKSVSDAAWE 42920 ++++ + G+ LV+ + + +A WE Sbjct: 1455 VERKMVNRQGKAVTKVLVKWSNEPLEEATWE 1485 Score = 44.5 bits (103), Expect(3) = 1e-038 Identities = 23/52 (44%), Positives = 30/52 (57%) Frame = +1 Query: 11086 KLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPSLIV 11241 KL P++ G YKI R G Y+L LP + VH VFH+S L +G+ S V Sbjct: 1387 KLSPKYFGPYKIIDRCGEVAYKLALP-SYSQVHPVFHVSQLKVLVGNVSTTV 1437 Score = 28.2 bits (61), Expect(3) = 1e-038 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 11331 KKVASVKVLWRNQFVEEATYEAEEDMRKRY 11420 K V V V W N+ +EEAT+E D++K + Sbjct: 1465 KAVTKVLVKWSNEPLEEATWEFLFDLQKTF 1494 >gb|AAD13304.1| (AF119040) polyprotein [Lycopersicon esculentum] Length = 1542 Score = 370 bits (939), Expect = 1e-099 Identities = 185/426 (43%), Positives = 273/426 (63%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 I+ I++L T PYRMAP EL EL++QL +LL+ G I+PS +P+GAPVLF +K+D Sbjct: 600 IDHKIELLPGTVAPAQAPYRMAPKELVELRKQLNELLDAGLIQPSKAPYGAPVLFQKKQD 659 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G+++M ++Y+ LNK T+KN+Y +P + DL D+L A F+K+DLR+ Y +VR+ E D PK Sbjct: 660 GTMRMCVDYRALNKATIKNKYSVPLVQDLMDRLSKACWFTKLDLRAGYWQVRIAEGDEPK 719 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 T TRYG Y+F V+ FG+TNA A F +LMN V +LD FV+V++DDI++YSR+ EEH Sbjct: 720 TTCVTRYGSYEFLVMPFGLTNAPATFCNLMNNVLFDYLDDFVVVYLDDIVIYSRTLEEHV 779 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 +HL VL L+ LY KCEF + FLGH++ + +R+D +K++A+ W P Sbjct: 780 NHLSLVLSQLRKYTLYVKMEKCEFAQQEIKFLGHLVSKNQVRMDPKKVQAIVDWQAPRHV 839 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 ++RSFL LA YYR+F+ ++ +A L L +K AK+ W+ CE++F LK+ + P L Sbjct: 840 KDLRSFLGLANYYRKFIAGYSKKAASLTDLLKKDAKWVWSEQCEKAFQNLKNAIASEPIL 899 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALK 50633 LP+ + ++ D S +G VL+Q G +A+ SR+L E Y TH+ ++ VVH L+ Sbjct: 900 KLPDFELPFEVHTDASDKAIGGVLVQEGHPVAFESRKLNDAEQRYSTHEKEMVAVVHCLQ 959 Query: 50632 IWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDA 50453 +WR YL G + TD+ + + QK+L +Q RW E L +YD + GK N V DA Sbjct: 960 VWRVYLLGTRFVVRTDNVANTFFKTQKKLSPKQARWQEFLAEYDFMWEHKPGKHNQVADA 1019 Query: 50452 LSRKSM 50435 LSRK + Sbjct: 1020 LSRKEV 1025 Score = 168 bits (422), Expect(2) = 1e-053 Identities = 90/262 (34%), Positives = 150/262 (56%), Gaps = 2/262 (0%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 LR+ +M E + + ++ +PG +M L +Y+W M+ DI +V C CQ K E +K Sbjct: 1090 LRKDLMKEAYDSAWAGHPGVERMLALLSRVYFWPKMEDDIEAYVKTCHVCQVDKTERKKE 1149 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 GLLQ + IP W ++MDFI+G P+ K SI V++DR +K + F+ S+E Sbjct: 1150 AGLLQPLPIPERPWLSVSMDFISGFPKVDGK-ASIMVVVDRFSKYSVFIAAPELCSSEVA 1208 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 L+ + +++ GVP I+SDR +FT FW + +GT++ ST HPQTDG++ER Sbjct: 1209 AELFYKHVIKYFGVPADIVSDRDTRFTGRFWTALFNMMGTELKFSTANHPQTDGQTERIN 1268 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVG 49432 LE+ LR + + +W + L +F YN H S+ +M+P+E + G++ +P+ DV Sbjct: 1269 HLLEEYLRHYVTASQRNWVELLDTAQFCYNLHKSSATEMSPFEIVLGKQPMTPL---DVA 1325 Query: 49431 ETKLIG--PDMIQQVVDKVKLIQE 49366 ++K G P + D+++++ E Sbjct: 1326 KSKNQGKCPAAYRVARDRLEMLSE 1349 Score = 138 bits (344), Expect = 8e-030 Identities = 80/151 (52%), Positives = 97/151 (63%), Gaps = 4/151 (2%) Frame = +3 Query: 42471 QDSLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKISSKTIHRGRILK*DGPFD 42650 QDSLRKA +RMK ADQH ++EF VG+ VL+KLTP WK+I SKT HRG I K DGPF+ Sbjct: 1351 QDSLRKAQQRMKKYADQHRRSVEFSVGDKVLLKLTPQIWKQIVSKTRHRGLIPKYDGPFE 1410 Query: 42651 VIERAGEVSCMLKLSEILKISPYISCEFS*TFS*GC*GSKNISCQECSLVVQTQFEEQIE 42830 V++R GEV+ LKL E LKI P F + + V TQ++ +IE Sbjct: 1411 VVKRVGEVAYRLKLPERLKIHPTFHVSFLKPYFADEDDPDRNRSKRAPPSVPTQYDAEIE 1470 Query: 42831 KILDQRNLGQTKKN----FLVQ*KGKSVSDAAWEK 42923 KILD R LG +KKN FLV KGKS +DA WEK Sbjct: 1471 KILDHRVLGTSKKNTKTEFLVHWKGKSAADAVWEK 1505 Score = 103 bits (254), Expect(4) = 3e-041 Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 25/143 (17%) Frame = +2 Query: 41363 EASKIKFLKPKSFGGVHGAKELEYFWWDLEYYFITANVPEANKLTMVLCYFRRDAIKWW- 41539 E+SK+K PK+F G AKELE F WD+E YF A VP+A+KL + Y DA WW Sbjct: 106 ESSKVKIPDPKAFSGARSAKELENFIWDMEQYFTAARVPDADKLNITTMYLSGDAKLWWR 165 Query: 41540 TKHVDDESSNQRKI------------------------HRLERLKTTQIHSGICEDIQ*V 41647 T++ DD S+ + +I +L+RL+ T ++ V Sbjct: 166 TRNADDVSAGRPRIDTWDKLIKEMRDQFLPSNASWLARDKLKRLRQTGSVREYIKEFTSV 225 Query: 41648 LLDI*NMFNEHKLHSLIS*LQGLAQNESCR*KVQNQLSTIVTVDPLID 41791 +LDI NM +E KLH+ IS +QG AQNE R V++ I D L+D Sbjct: 226 MLDIQNMSDEDKLHNFISGMQGWAQNELRRQNVKDLPGAIAAADSLVD 273 Score = 102 bits (251), Expect(4) = 2e-052 Identities = 102/424 (24%), Positives = 177/424 (41%), Gaps = 3/424 (0%) Frame = +2 Query: 9782 KQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLGVR 9961 KQ RW E +YD + PGK N V +L R +E+ V+ + +L Sbjct: 991 KQARWQEFLAEYDFMWEHKPGKHNQVADALSR------------KEVFVAVYSISKLETD 1038 Query: 9962 IMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKYQE 10141 D + N D +++ V++ + + D + Sbjct: 1039 FYDRIR--LCAAN----------------DSLYVKWMGQVQDGTMRRYWIEDDLLYFKGG 1080 Query: 10142 RLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSNYQ 10321 R+ VPN G + +M++++ + ++ G +M LL VY ++ DI +V Q Sbjct: 1081 RIVVPNQGGLRKDLMKEAYDSAWAGHPGVERMLALLSRVYFWPKMEDDIEAYVKTCHVCQ 1140 Query: 10322 QVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQV 10501 K E ++ GL + + +P W ++MDFI F SI V+VDR +K S F+ Sbjct: 1141 VDKTERKKEAGLLQPLPIPERPWLSVSMDFISGFP-KVDGKASIMVVVDRFSKYSVFIAA 1199 Query: 10502 SSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLL-FIL 10678 +E A+L+ + V + G I+S+R FT + W + G++L Sbjct: 1200 PELCSSEVAAELFYKHVIKYFGVPADIVSDRDTRFTGRFWTALFNMMGTELKFSTANHPQ 1259 Query: 10679 KEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGRRGR 10858 + + + LE LR V + NW + + ++ YN S+ +M+P+E + G++ Sbjct: 1260 TDGQTERINHLLEEYLRHYVTASQRNWVELLDTAQFCYNLHKSSATEMSPFEIVLGKQPM 1319 Query: 10859 YHIRLFKVGESGL--IGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLECEVDDW 11032 + + K G V ++ L Q+ + Q K D RR +E V D Sbjct: 1320 TPLDVAKSKNQGKCPAAYRVARDRLEMLSEAQDSLRKAQQRMKKYADQHRRSVEFSVGDK 1379 Query: 11033 VYLKV*P 11053 V LK+ P Sbjct: 1380 VLLKLTP 1386 Score = 92.4 bits (226), Expect(4) = 2e-052 Identities = 129/505 (25%), Positives = 226/505 (44%), Gaps = 29/505 (5%) Frame = +1 Query: 7990 AAPKGATFDTGGEANHLYGITNCQEQENCKYVFTSMI----KVFTFDVYALLNPGANLSY 8157 A P G +F NH+ GI N +E + S+I KV V A+++ GA ++ Sbjct: 373 ANPLGLSF------NHIMGINNVREISSTSNPHASLIHIEMKVKEQCVMAMVDTGATHTF 426 Query: 8158 LIPYVANHFEIVPEKLCEPFYISTPVGESILAERVYHDCHVSTNHNMTMADLVELYIVEF 8337 + +A + K P Y+ T ++ + + +ST + + +L+ + + +F Sbjct: 427 VDVKIATKLGLKLSK--SPSYVKTVNAKAQAIVGMAYSVSMSTGNWVGKHNLMVMPLGDF 484 Query: 8338 DVILGMD*LHALHAL-YVSIDCI-----------K*VFKFQILNEPIIIVVQQCLRVLFY 8481 ++ILG+D L + + +D + K V F +N+ ++ L + Sbjct: 485 EIILGIDFLRKYQFVPFPHLDGVMVMSGSDAGFLKGVHPFGNINKVAKKKDKEML-LSAM 543 Query: 8482 LIPYGEEVSPKLVYLSLSRAN-DLSVEVPSLQLVCIVGKFLDDL-----FGVPPDREIDF 8643 I G + + + +L D+ +EVP + ++ ++ D + +PP R+ID Sbjct: 544 SIDKGLKKGDETILAALVEIKPDVKMEVPDC-VAELLKQYADVMPPELPKKLPPRRDIDH 602 Query: 8644 GIQNIPDT-RPISIP*YIMAPXXXXXXXXXXXDHVXXXXXXXXXXXXGSPRLVFKEE--K 8814 I+ +P T P P Y MAP + + G+P L K++ Sbjct: 603 KIELLPGTVAPAQAP-YRMAPKELVELRKQLNELLDAGLIQPSKAPYGAPVLFQKKQDGT 661 Query: 8815 VIP*DMYRLPPI**CNHKEKISSSKDIWSLRSTFGFFFLFQY*PQIW----LS*DESKGM 8982 + YR +K + +D+ S +F W DE K Sbjct: 662 MRMCVDYRALNKATIKNKYSVPLVQDLMDRLSKACWFTKLDLRAGYWQVRIAEGDEPKTT 721 Query: 8983 *CSQDKFYKKVWALFISGYFHCFDIAPAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNK 9162 ++ Y+ F+ F + APA F LM+ V +LD F YS Sbjct: 722 CVTRYGSYE-----FLVMPFGLTN-APATFCNLMNNVLFDYLDDFVVVYLDDIVIYSRTL 775 Query: 9163 EDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPR 9342 E+H + L +VL LR VK K EF + + FLGH++S +R+D +K+++ + Sbjct: 776 EEHVNHLSLVLSQLRKYTLYVKMEKCEFAQQEIKFLGHLVSKNQVRMDPKKVQAIVDWQA 835 Query: 9343 PIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFREL 9504 P K++ SFL LA YYR+F+ +S ++ LT + ++ SE CE F+ L Sbjct: 836 PRHVKDLRSFLGLANYYRKFIAGYSKKAASLTDLLKKDAKWVWSEQCEKAFQNL 889 Score = 70.2 bits (169), Expect(2) = 1e-053 Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 2/83 (2%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPM--KGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYE 49167 + +AD R +EF +GD V LK++P K ++ R L P+Y GP+++V+ +G+VAY Sbjct: 1362 KKYADQHRRSVEFSVGDKVLLKLTPQIWKQIVSKTRHRGLIPKYDGPFEVVKRVGEVAYR 1421 Query: 49166 LDLPSDLEVVHPVFHVSMLRKCIGD 49092 L LP L+ +HP FHVS L+ D Sbjct: 1422 LKLPERLK-IHPTFHVSFLKPYFAD 1445 Score = 66.0 bits (158), Expect = 5e-008 Identities = 35/105 (33%), Positives = 55/105 (52%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + D I + +P+GA VLF +K+ +R+C+DY N T K KY + + Sbjct: 635 LLDAGLIQPSKAPYGAPVLFQKKQDGTMRMCVDYRALNKATIKNKYSVPLVQDLMDRLSK 694 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 ++LR+G ++++ E D PKT + RYG Y FLV+ LT Sbjct: 695 ACWFTKLDLRAGYWQVRIAEGDEPKTTCVTRYGSYEFLVMPFGLT 739 Score = 58.9 bits (140), Expect(4) = 3e-041 Identities = 28/92 (30%), Positives = 52/92 (56%) Frame = +3 Query: 41064 IVTNVKLKEYSSRLEAFVGMKNECLDDPNLVYILTQILGIKKEFETFHGELGLNRVHIQE 41243 +V N +L E + ++E+FVG + L DP V + TQI+ ++ + E GE+G R ++ Sbjct: 1 MVKNAELWELARKIESFVGFTEDVLADPTFVDLFTQIIELRVDAEKVQGEIGGYRQNVDN 60 Query: 41244 QLADDFNFNEVATLQIYDSMKNNKDVKTELVV 41339 + + +F T ++ K N++++ ELVV Sbjct: 61 HITEILDFRATTTQKLEGLQKENENLRAELVV 92 Score = 49.6 bits (116), Expect(4) = 3e-041 Identities = 38/109 (34%), Positives = 57/109 (51%), Gaps = 4/109 (3%) Frame = +1 Query: 41818 PDSLSNMKHKEKGKDWKKYNRKPEGNDRGKGRM----DIASCNCGNKIVDKVC*SFKKPG 41985 P + N K EK +W+K +RK ND+GK +M D GN K C + P Sbjct: 284 PSTSKNKKKNEKKGEWRKDSRKENANDKGKAQMKDGKDRPKSKDGN---SKGCWTCGGP- 339 Query: 41986 HQVRNYPNKEKVKAHLAEEDKQIKGKEQELVAYVNELRQLNTLSIISIMDVEE 42144 H ++ PN+EKV A LA Q + +++E+VA + L+ I+ I +V E Sbjct: 340 HLAKSCPNREKVNALLAGNVNQ-REEDEEIVAAMANPLGLSFNHIMGINNVRE 391 Score = 44.5 bits (103), Expect(4) = 2e-052 Identities = 19/46 (41%), Positives = 29/46 (62%) Frame = +1 Query: 11089 LIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGD 11226 LIP++ G +++ KRVG Y L+LP+ L +H FH+S L + D Sbjct: 1401 LIPKYDGPFEVVKRVGEVAYRLKLPERL-KIHPTFHVSFLKPYFAD 1445 Score = 37.5 bits (85), Expect(4) = 2e-052 Identities = 17/50 (34%), Positives = 30/50 (60%) Frame = +3 Query: 9591 GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDN 9740 G + ++S+ L E+ Y TH+ E+ ++V L++W +L G R + TDN Sbjct: 927 GHPVAFESRKLNDAEQRYSTHEKEMVAVVHCLQVWRVYLLGTRFVVRTDN 976 Score = 26.6 bits (57), Expect(4) = 3e-041 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +3 Query: 42174 VSDTTNDISYAYDGLIYVCTKNSEKSVVTMVDTRFTHT 42287 +S T+N + LI++ K E+ V+ MVDT THT Sbjct: 392 ISSTSNP----HASLIHIEMKVKEQCVMAMVDTGATHT 425 >gb|AAG13508.1|AC068924_13 (AC068924) putative gag-pol polyprotein; 99986-95160 [Oryza sativa] Length = 1608 Score = 347 bits (881), Expect(2) = 4e-098 Identities = 191/480 (39%), Positives = 282/480 (57%), Gaps = 3/480 (0%) Frame = -2 Query: 51880 ISYLKARKMVRKGYIYHLVRVHDINA-EAPTLQSVL--VVDEFPDVFXXXXXXXXXXXKI 51710 IS + + M +KG + LV ++ A T+ ++ +++EF ++F Sbjct: 569 ISNDQLQGMSKKGAVMCLVHLNVAETLTATTVPEIVQPILNEFQEIFSEPTELPPKRN-C 627 Query: 51709 EFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDG 51530 + I ++ +P+ + PYR PA E++ Q+ ++L G I+PS+SP+ +P L V+KKDG Sbjct: 628 DHHIPLVEGAKPVNLRPYRYKPALKDEIERQVAEMLRSGVIQPSSSPFSSPALLVKKKDG 687 Query: 51529 SLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKT 51350 + ++ I+Y+QLN VTVK++YP+P ID+L D+L G+K FSK+DLR+ YH++R+ E D KT Sbjct: 688 TWRLCIDYRQLNDVTVKSKYPVPVIDELLDELAGSKWFSKLDLRAGYHQIRMAEGDEYKT 747 Query: 51349 AFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHAD 51170 AF T GHY+++V+SFG+T A A F+ MN P L F +VF DDIL+YS + E H Sbjct: 748 AFQTHSGHYEYKVMSFGLTGAPATFLSAMNETLSPVLRKFALVFFDDILIYSPTLELHLQ 807 Query: 51169 HLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPT 50990 H+RTVL++L + SKC F +++LGH+IGA G+ D KI+ V +W +PTT Sbjct: 808 HVRTVLQLLSAHQWKVKLSKCSFAQQEISYLGHVIGAAGVATDPAKIQDVVSWPQPTTIK 867 Query: 50989 EVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLN 50810 ++R FL LA YYR+FV F LIS PL +L +K F WT E +F LK L AP L Sbjct: 868 KLRGFLGLAGYYRKFVRHFGLISKPLTQLLKKGIPFKWTPEIESAFQQLKQALVAAPVLA 927 Query: 50809 LPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKI 50630 LP+ + I D S VG+G VL Q IAY SR L T++ + ++ A++ Sbjct: 928 LPDFSKHFTIETDASDVGIGAVLSQEKHPIAYLSRALGPKTRGLSTYEKEYMAIILAVEH 987 Query: 50629 WRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDAL 50450 WR YL I TDH SL ++ +Q+ Q++ L I Y G +N DAL Sbjct: 988 WRPYLQQGEFIILTDHHSLMHLTEQRLHTPWQQKAFTKLLGLQYKICYRKGVSNAAADAL 1047 Query: 50449 SRK 50441 SR+ Sbjct: 1048 SRR 1050 Score = 164 bits (411), Expect = 1e-037 Identities = 81/227 (35%), Positives = 130/227 (56%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ +++ E H+ + G Y ++ L+ W GMKK I E + C C K + + Sbjct: 1119 LQHKLVNELHATPLGGHSGFPVTYRKVKSLFAWPGMKKLIKEQLQSCQVCLQAKPDRARY 1178 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 GLLQ + +P W+ I++DFI GLPR+ + I V++D+ +K +HF+P+ ++A Sbjct: 1179 PGLLQPLPVPAGAWQTISLDFIEGLPRSS-HYNCILVVVDKFSKYSHFIPLSHPFNAGGV 1237 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 + +++ I +LHG+P +IISDR FT+ FW GT +++S+ +HPQ+DG++ER Sbjct: 1238 AQEFMKNIYKLHGLPRAIISDRDKIFTSQFWDQLFSKFGTDLHMSSAYHPQSDGQTERVN 1297 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 Q LE LR + W L L EF YN +HS++ P+E LYG Sbjct: 1298 QCLEIYLRCFVHAAPHKWSSWLYLAEFWYNTSFHSTLNKTPFEVLYG 1344 Score = 125 bits (312), Expect(3) = 3e-031 Identities = 90/311 (28%), Positives = 150/311 (47%), Gaps = 2/311 (0%) Frame = +2 Query: 10121 GVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFV 10300 G+LKY+ ++ V N Q ++ + H+T SG YR ++ ++ G+KK I + + Sbjct: 1103 GILKYKGKIWVGNNTALQHKLVNELHATPLGGHSGFPVTYRKVKSLFAWPGMKKLIKEQL 1162 Query: 10301 AMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTK 10480 Q K + R GL + + +P W+ I++DFI+ S +N I V+VD+ +K Sbjct: 1163 QSCQVCLQAKPDRARYPGLLQPLPVPAGAWQTISLDFIEGLPRSSH-YNCILVVVDKFSK 1221 Query: 10481 SSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN* 10660 SHF+ +S A A+ +++ + +LHG IIS+R FT+Q W G+ L+ Sbjct: 1222 YSHFIPLSHPFNAGGVAQEFMKNIYKLHGLPRAIISDRDKIFTSQFWDQLFSKFGTDLHM 1281 Query: 10661 VLLF-ILKEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEA 10837 + + + + + LE LR V W + L E+ YN S+HS++ P+E Sbjct: 1282 SSAYHPQSDGQTERVNQCLEIYLRCFVHAAPHKWSSWLYLAEFWYNTSFHSTLNKTPFEV 1341 Query: 10838 LYG-RRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRRPLE 11014 LYG + I L + L + M +L +Q+ + Q K D +R + Sbjct: 1342 LYGYTPSHFGIGLDDCQIADLHEWHTERKFMQQL--LQQHLNRAQQQMKHQADKKRSFRQ 1399 Query: 11015 CEVDDWVYLKV*P 11053 V DWVYLK+ P Sbjct: 1400 FAVGDWVYLKLQP 1412 Score = 88.5 bits (216), Expect(2) = 5e-027 Identities = 53/151 (35%), Positives = 75/151 (49%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F+ M+ P L F YS E H +R VLQ L + VK SK Sbjct: 768 APATFLSAMNETLSPVLRKFALVFFDDILIYSPTLELHLQHVRTVLQLLSAHQWKVKLSK 827 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + + +LGH+I G+ D KI+ S+P+P K + FL LA YYR+FV F Sbjct: 828 CSFAQQEISYLGHVIGAAGVATDPAKIQDVVSWPQPTTIKKLRGFLGLAGYYRKFVRHFG 887 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 IS PLT++ + F+ + E F++L + Sbjct: 888 LISKPLTQLLKKGIPFKWTPEIESAFQQLKQ 918 Score = 78.0 bits (189), Expect = 1e-011 Identities = 44/149 (29%), Positives = 78/149 (51%), Gaps = 1/149 (0%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRK-GKLSPRYIGPYQIVRWIGKVAYEL 49164 + AD +R +F +GDWV+LK+ P R KL+ RY GP+Q++ +G VAY + Sbjct: 1388 KHQADKKRSFRQFAVGDWVYLKLQPYVQTFVAQRACHKLAFRYYGPFQVMSRVGTVAYHI 1447 Query: 49163 DLPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTK 48984 LP+ +HPVFHVS L+ +G +V ++ + P LD+++ + + Sbjct: 1448 QLPA-TSSIHPVFHVSQLKAAVGFSKKV----QDELPTSLGALQVPFQFLDKRLVKKGNR 1502 Query: 48983 DVASVKVLWQNNNREEMTREVEDEMKNKYP 48894 V + W +++ E T E +++ ++P Sbjct: 1503 SVLQLLTHWYHSSPSESTWEDMEDLFARFP 1532 Score = 61.3 bits (146), Expect(2) = 5e-027 Identities = 34/94 (36%), Positives = 50/94 (53%) Frame = +2 Query: 8774 SPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRS 8953 SP+ + L ++KK R+CIDY Q N+VT K KYP+ I ++LR+ Sbjct: 673 SPFSSPALLVKKKDGTWRLCIDYRQLNDVTVKSKYPVPVIDELLDELAGSKWFSKLDLRA 732 Query: 8954 GCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 G H++++ E D KT F GHY + V+ LT Sbjct: 733 GYHQIRMAEGDEYKTAFQTHSGHYEYKVMSFGLT 766 Score = 40.2 bits (92), Expect(2) = 4e-098 Identities = 28/101 (27%), Positives = 46/101 (44%), Gaps = 1/101 (0%) Frame = -3 Query: 52224 LIDPGSTL*FLSAFIASRIGIESELIEPFEVATPLGDSVIATRVYKNCSVVIYSRRTIAD 52045 L+D GST F+ A + +++ +L + +V G + NCS +D Sbjct: 453 LVDSGSTHSFIDAKLGAQLCGLQKLNQAIKVQVADGSQLFCDSFLPNCSWWSQGHSFTSD 512 Query: 52044 LIELTIIEFDIIMGMDWLAA-CYANVDYRGKIVRFQFLGEPI 51922 L + +D I+GMDWL VD+ K + FQ G+ + Sbjct: 513 FRLLPLGSYDAILGMDWLEQFSPMQVDWVHKWIAFQHHGQAV 554 Score = 37.9 bits (86), Expect(3) = 3e-031 Identities = 17/46 (36%), Positives = 28/46 (59%) Frame = +1 Query: 11086 KLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLG 11223 KL R+ G +++ RVG Y ++LP +++H VFH+S L +G Sbjct: 1425 KLAFRYYGPFQVMSRVGTVAYHIQLP-ATSSIHPVFHVSQLKAAVG 1469 Score = 20.8 bits (42), Expect(3) = 3e-031 Identities = 10/39 (25%), Positives = 19/39 (48%) Frame = +3 Query: 11304 DLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRY 11420 D ++ K + V + W + E+T+E ED+ R+ Sbjct: 1493 DKRLVKKGNRSVLQLLTHWYHSSPSESTWEDMEDLFARF 1531 >gb|AAD25146.1|AC006420_1 (AC006420) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 899 Score = 274 bits (693), Expect(2) = 9e-095 Identities = 161/366 (43%), Positives = 204/366 (54%) Frame = -2 Query: 51364 DIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSE 51185 D+ KTAF TRYGH++F V+ FG+TNA A FM +MN VF+ FLD FVI+F+DDILVYS+S Sbjct: 287 DVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSW 346 Query: 51184 EEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTR 51005 E H +HLR VL L+ +L+A SKC FW S Sbjct: 347 EAHQEHLRAVLERLREHELFAKLSKCSFWQRSCE-------------------------- 380 Query: 51004 PTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTI 50825 +SFLEL K L +AP++ L Sbjct: 381 -------KSFLEL---------KAMLTNAPVLVL-------------------------- 398 Query: 50824 APFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVV 50645 PE + Y +Y D S VGLGCVLMQ G VIAYASRQL KHE NYPTHDL++ VV Sbjct: 399 ------PEEGEPYTVYTDASIVGLGCVLMQKGSVIAYASRQLWKHEKNYPTHDLEMAAVV 452 Query: 50644 HALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANV 50465 ALKIWR YLYG V IYTDHKSL+YIF Q EL LRQRRW+EL+ DYD+DI YH GKAN Sbjct: 453 FALKIWRSYLYGAKVQIYTDHKSLKYIFIQPELNLRQRRWMELVADYDLDIAYHPGKANQ 512 Query: 50464 VVDALSRKSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVK 50285 V DALSR+ ++V+ E R V + + +L V + E + + ++ ++ ++ Sbjct: 513 VADALSRRR----SEVEAE-RSQVDLVNMMGTLHVNALSKEVESLGLGAADQADLLSRIR 567 Query: 50284 RHQYKD 50267 Q +D Sbjct: 568 LAQERD 573 Score = 123 bits (305), Expect(2) = 3e-042 Identities = 72/212 (33%), Positives = 112/212 (51%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 NL+QRRW+EL DYD+ I YHPGKAN V +L R S ++ + V+ + L Sbjct: 486 NLRQRRWMELVADYDLDIAYHPGKANQVADALSRRR----SEVEAERSQVDLVNMMGTLH 541 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKY 10135 V + + + ++ L+S ++ ++D N K + ++ +G + Sbjct: 542 VNALSKEVESLGLGAADQADLLSRIRLAQERDEEIKGWALNNKTE----YQTSNNGTIVV 597 Query: 10136 QERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSN 10315 R+CVPN ++ I+ ++H + FS GS KMYR L+ Y G+KKD+ ++VA Sbjct: 598 NGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAKCPT 657 Query: 10316 YQQVKVEHQRLGGLAKNIELP*WKWEIINMDF 10411 Q VK EHQ GL +N+ +P WKW+ I MDF Sbjct: 658 CQLVKAEHQVPSGLLQNLPIPEWKWDHITMDF 689 Score = 116 bits (288), Expect(2) = 7e-048 Identities = 61/142 (42%), Positives = 90/142 (62%), Gaps = 6/142 (4%) Frame = -3 Query: 49758 HGVPTSIISD------RGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLED 49597 H VP+ ++ + + T +F +FQK LGT+VNLST +HPQTDG+SERTIQTLED Sbjct: 665 HQVPSGLLQNLPIPEWKWDHITMDF--AFQKALGTRVNLSTAYHPQTDGQSERTIQTLED 722 Query: 49596 MLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVGETKLI 49417 MLRA ++D+ G+W+ +L L ALYGR CR+P+ W VGE +L Sbjct: 723 MLRACVLDWGGNWEKYLTL-------------------ALYGRACRTPLCWTPVGERRLF 763 Query: 49416 GPDMIQQVVDKVKLIQERLLASQSR*KS 49333 GP ++ + +++K ++ +L + R KS Sbjct: 764 GPTIVDETTERMKFLKIKLKEAHDRQKS 791 Score = 103 bits (254), Expect(2) = 7e-048 Identities = 51/110 (46%), Positives = 72/110 (65%), Gaps = 2/110 (1%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 +S+A+ RR +LEFQ+GD V+LK KG R + KLSPRY+GPY+++ +G VAY+LD Sbjct: 790 KSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLD 849 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQ--VIEEFSYEEKPIAMLD 49011 LP L H VFHVS LRKC+ D ++DV + E + E P+ ++D Sbjct: 850 LPPKLNAFHNVFHVSQLRKCLSDQEE--SVEDVPPGLKENMTVEAWPVRIMD 899 Score = 102 bits (251), Expect(2) = 9e-095 Identities = 44/81 (54%), Positives = 57/81 (70%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ +++ E H + +SI+PGS KMY DL+ Y W GMKKD+A +VA+C CQ VK EHQ Sbjct: 609 LKEEILREAHQSKFSIHPGSNKMYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVP 668 Query: 49971 GGLLQEIEIPTWKWEMINMDF 49909 GLLQ + IP WKW+ I MDF Sbjct: 669 SGLLQNLPIPEWKWDHITMDF 689 Score = 78.0 bits (189), Expect(2) = 3e-042 Identities = 37/64 (57%), Positives = 50/64 (77%), Gaps = 1/64 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L G VI Y S+ L +EKNYPTHD+E+A++VF+LKIW +LYG +V I+TD+KS Sbjct: 416 LGCVLMQKGSVIAYASRQLWKHEKNYPTHDLEMAAVVFALKIWRSYLYGAKVQIYTDHKS 475 Query: 9747 L*YVF 9761 L Y+F Sbjct: 476 LKYIF 480 Score = 72.2 bits (174), Expect(2) = 5e-023 Identities = 35/79 (44%), Positives = 50/79 (62%) Frame = +1 Query: 11047 LTMKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGD 11226 +T KG RF ++ KL PR++G YK+ +RVG Y+L+LP +L A H VFH+S L K L D Sbjct: 813 MTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSD 872 Query: 11227 PSLIVPTKIVGIKDNLSYE 11283 V G+K+N++ E Sbjct: 873 QEESVEDVPPGLKENMTVE 891 Score = 64.4 bits (154), Expect(2) = 5e-023 Identities = 44/140 (31%), Positives = 73/140 (51%), Gaps = 1/140 (0%) Frame = +2 Query: 10625 SFQKSQGSKLN*VLLFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNS 10801 +FQK+ G+++N + + + + + TI+TLE MLRACV+D+ NW+ + L Sbjct: 690 AFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNWEKYLTL-------- 741 Query: 10802 YHSSIQMAPYEALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKK 10981 ALYGR R + VGE L G +V + +++K ++ ++ +K Sbjct: 742 -----------ALYGRACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEAHDRQK 790 Query: 10982 FNTDIRRRPLECEVDDWVYLK 11044 + RR+ LE +V D VYLK Sbjct: 791 SYANKRRKELEFQVGDLVYLK 811 Score = 48.8 bits (114), Expect = 0.007 Identities = 35/90 (38%), Positives = 46/90 (50%), Gaps = 4/90 (4%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APAAFM +M+ VF+ FLD F YS + E H LR VL+ LR E K SK Sbjct: 312 APAAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSWEAHQEHLRAVLERLREHELFAKLSK 371 Query: 9238 *EF----CLKYVVFLGHIISGEGIRVDKEKIESY 9327 F C K + L +++ + V E+ E Y Sbjct: 372 CSFWQRSCEKSFLELKAMLTNAPVLVLPEEGEPY 405 Score = 38.7 bits (88), Expect = 8.0 Identities = 28/110 (25%), Positives = 49/110 (44%) Frame = -1 Query: 53315 FFGSRPQDDPQKFICQMQRTLRISKASETESVELATYRLRDVDINWYESWELSRGEGAPP 53136 F GS ++ +++R + ++ E ++A + L NW+ + E RG+ Sbjct: 147 FMGSTDPIVADEWRSRLKRNFKSTRCPEDYQRDIAVHFLEGDAHNWWLTVEKRRGDEVRS 206 Query: 53135 MIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRY 52986 +F + F + PE +L L + R+VREY EF+ L RY Sbjct: 207 FA--DFEDEFNKKYFPPEAWDRLECAYLDLVQGNRTVREYDEEFNRLRRY 254 >gb|AAC26251.1| (AF077408) contains similarity to reverse transcriptase (Pfam: rvt.hmm, score: 33.26) [Arabidopsis thaliana] Length = 973 Score = 271 bits (686), Expect(2) = 2e-093 Identities = 157/366 (42%), Positives = 204/366 (54%) Frame = -2 Query: 51364 DIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSE 51185 D+ KTAF TRYGH++F V+ FG+TNA FM +MN VF+ FLD FVI+F+DDILVYS+S Sbjct: 287 DVRKTAFLTRYGHFEFVVMPFGLTNAPTAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSW 346 Query: 51184 EEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTR 51005 E H +HLR VL L+ +L+A SKC FW S Sbjct: 347 EAHQEHLRAVLEQLREHELFAKLSKCSFWQRSCE-------------------------- 380 Query: 51004 PTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTI 50825 ++FLEL K L +AP++ L ++ Sbjct: 381 -------KNFLEL---------KAMLTNAPVLVLPEEG---------------------- 402 Query: 50824 APFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVV 50645 + Y +Y D S VGL CVLMQ G VIAYASRQLRKHE NYPTHDL++ VV Sbjct: 403 ----------EPYTVYTDASVVGLECVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVV 452 Query: 50644 HALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANV 50465 ALKIWR YLYG V IYTDHKSL+YIF Q EL LRQRRW+EL+ DYD+DI YH GKAN Sbjct: 453 FALKIWRSYLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYDLDIAYHAGKANQ 512 Query: 50464 VVDALSRKSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVK 50285 V DALSR+ ++V+ E R V + + +L V + E + + +++++ ++ Sbjct: 513 VADALSRRR----SEVEAE-RSQVDLVNMMGTLHVNALSKEVEPLGLGAADQANLLSRIR 567 Query: 50284 RHQYKD 50267 Q +D Sbjct: 568 LAQERD 573 Score = 123 bits (305), Expect(2) = 1e-055 Identities = 64/152 (42%), Positives = 92/152 (60%), Gaps = 2/152 (1%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 +S+A+ RR +LEFQ+ D V+LK KG R + KLSPRY+GPY+++ +G VAY+LD Sbjct: 793 KSYANKRRKELEFQVEDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLD 852 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQ--VIEEFSYEEKPIAMLDRQVRRLRT 48987 LP L H VFHVS LRKC+ + ++DV + E + E P+ ++DR + R Sbjct: 853 LPPKLNAFHNVFHVSQLRKCLSNQEE--SVEDVPPGLKENMTVEAWPVQIMDRMTKGTRG 910 Query: 48986 KDVASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 K +KVLW RE+ T E E++MK + F Sbjct: 911 KSRDLLKVLWNCGGREQYTWETENKMKANFSEWF 944 Score = 122 bits (303), Expect(2) = 1e-055 Identities = 59/124 (47%), Positives = 82/124 (65%) Frame = -3 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 FW++FQK LGT+VNLST +HPQTDG+SERTIQTLEDMLRA +D+ G+W+ +L L Sbjct: 690 FWKAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACALDWGGNWEKYLRL----- 744 Query: 49524 NNHYHSSIQMAPYEALYGRKCRSPIGWFDVGETKLIGPDMIQQVVDKVKLIQERLLASQS 49345 ALYGR CR+P+ W VGE +L GP ++ + +++K ++ +L +Q Sbjct: 745 --------------ALYGRACRTPLCWTPVGERRLFGPIIVDETTERMKFLKIKLKEAQD 790 Query: 49344 R*KS 49333 R KS Sbjct: 791 RQKS 794 Score = 120 bits (297), Expect(2) = 6e-042 Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 1/217 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 NL+QRRW+EL DYD+ I YH GKAN V +L R S ++ + V+ + L Sbjct: 486 NLRQRRWMELVADYDLDIAYHAGKANQVADALSRRR----SEVEAERSQVDLVNMMGTLH 541 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKY 10135 V + + + +++L+S ++ ++D N K + ++ +G + Sbjct: 542 VNALSKEVEPLGLGAADQANLLSRIRLAQERDEEIKGWALNNKTE----YQTSNNGTIVV 597 Query: 10136 QERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSN 10315 R+CVPN ++ I+ ++H + FS GS K+YR L+ Y G+KKD+ ++VA Sbjct: 598 NGRVCVPNNRALKEEILREAHQSKFSIHPGSNKIYRDLKRYYHWVGMKKDVARWVAKCPT 657 Query: 10316 YQQVKVEHQRLGGLAKNIELP*WKWEIINMDFI-KCFQ 10426 Q VK EHQ GL +N+ +P WKW+ I MDF K FQ Sbjct: 658 CQLVKAEHQVPSGLLQNLPIPEWKWDHITMDFFWKAFQ 695 Score = 100 bits (247), Expect(2) = 2e-093 Identities = 43/81 (53%), Positives = 57/81 (70%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ +++ E H + +SI+PGS K+Y DL+ Y W GMKKD+A +VA+C CQ VK EHQ Sbjct: 609 LKEEILREAHQSKFSIHPGSNKIYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVP 668 Query: 49971 GGLLQEIEIPTWKWEMINMDF 49909 GLLQ + IP WKW+ I MDF Sbjct: 669 SGLLQNLPIPEWKWDHITMDF 689 Score = 80.0 bits (194), Expect(2) = 6e-042 Identities = 38/65 (58%), Positives = 51/65 (78%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L G VI Y S+ L +EKNYPTHD+E+A++VF+LKIW +LYG +V I+TD+KS Sbjct: 416 LECVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLYGAKVQIYTDHKS 475 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 476 LKYIFT 481 Score = 71.0 bits (171), Expect(3) = 6e-027 Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 1/142 (0%) Frame = +2 Query: 10619 WKSFQKSQGSKLN*VLLFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYN 10795 WK+FQK+ G+++N + + + + + TI+TLE MLRAC +D+ NW+ + L Sbjct: 691 WKAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACALDWGGNWEKYLRL------ 744 Query: 10796 NSYHSSIQMAPYEALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSC 10975 ALYGR R + VGE L G +V + +++K ++ ++ Q Sbjct: 745 -------------ALYGRACRTPLCWTPVGERRLFGPIIVDETTERMKFLKIKLKEAQDR 791 Query: 10976 KKFNTDIRRRPLECEVDDWVYLK 11044 +K + RR+ LE +V+D VYLK Sbjct: 792 QKSYANKRRKELEFQVEDLVYLK 814 Score = 70.2 bits (169), Expect(3) = 6e-027 Identities = 34/79 (43%), Positives = 50/79 (63%) Frame = +1 Query: 11047 LTMKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGD 11226 +T KG RF ++ KL PR++G YK+ +RVG Y+L+LP +L A H VFH+S L K L + Sbjct: 816 MTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSN 875 Query: 11227 PSLIVPTKIVGIKDNLSYE 11283 V G+K+N++ E Sbjct: 876 QEESVEDVPPGLKENMTVE 894 Score = 47.3 bits (110), Expect = 0.021 Identities = 34/90 (37%), Positives = 45/90 (49%), Gaps = 4/90 (4%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP AFM +M+ VF+ FLD F YS + E H LR VL+ LR E K SK Sbjct: 312 APTAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSWEAHQEHLRAVLEQLREHELFAKLSK 371 Query: 9238 *EF----CLKYVVFLGHIISGEGIRVDKEKIESY 9327 F C K + L +++ + V E+ E Y Sbjct: 372 CSFWQRSCEKNFLELKAMLTNAPVLVLPEEGEPY 405 Score = 28.6 bits (62), Expect(3) = 6e-027 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFESI 11441 I D + R K +KVLW E+ T+E E M+ +S F+ + Sbjct: 900 IMDRMTKGTRGKSRDLLKVLWNCGGREQYTWETENKMKANFSEWFKEM 947 >emb|CAB80807.1| (AL161498) putative transposon protein [Arabidopsis thaliana] Length = 973 Score = 271 bits (686), Expect(2) = 2e-093 Identities = 157/366 (42%), Positives = 204/366 (54%) Frame = -2 Query: 51364 DIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSE 51185 D+ KTAF TRYGH++F V+ FG+TNA FM +MN VF+ FLD FVI+F+DDILVYS+S Sbjct: 287 DVRKTAFLTRYGHFEFVVMPFGLTNAPTAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSW 346 Query: 51184 EEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTR 51005 E H +HLR VL L+ +L+A SKC FW S Sbjct: 347 EAHQEHLRAVLEQLREHELFAKLSKCSFWQRSCE-------------------------- 380 Query: 51004 PTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTI 50825 ++FLEL K L +AP++ L ++ Sbjct: 381 -------KNFLEL---------KAMLTNAPVLVLPEEG---------------------- 402 Query: 50824 APFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVV 50645 + Y +Y D S VGL CVLMQ G VIAYASRQLRKHE NYPTHDL++ VV Sbjct: 403 ----------EPYTVYTDASVVGLECVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVV 452 Query: 50644 HALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANV 50465 ALKIWR YLYG V IYTDHKSL+YIF Q EL LRQRRW+EL+ DYD+DI YH GKAN Sbjct: 453 FALKIWRSYLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYDLDIAYHAGKANQ 512 Query: 50464 VVDALSRKSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVK 50285 V DALSR+ ++V+ E R V + + +L V + E + + +++++ ++ Sbjct: 513 VADALSRRR----SEVEAE-RSQVDLVNMMGTLHVNALSKEVEPLGLGAADQANLLSRIR 567 Query: 50284 RHQYKD 50267 Q +D Sbjct: 568 LAQERD 573 Score = 123 bits (305), Expect(2) = 1e-055 Identities = 64/152 (42%), Positives = 92/152 (60%), Gaps = 2/152 (1%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 +S+A+ RR +LEFQ+ D V+LK KG R + KLSPRY+GPY+++ +G VAY+LD Sbjct: 793 KSYANKRRKELEFQVEDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLD 852 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQ--VIEEFSYEEKPIAMLDRQVRRLRT 48987 LP L H VFHVS LRKC+ + ++DV + E + E P+ ++DR + R Sbjct: 853 LPPKLNAFHNVFHVSQLRKCLSNQEE--SVEDVPPGLKENMTVEAWPVQIMDRMTKGTRG 910 Query: 48986 KDVASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 K +KVLW RE+ T E E++MK + F Sbjct: 911 KSRDLLKVLWNCGGREQYTWETENKMKANFSEWF 944 Score = 122 bits (303), Expect(2) = 1e-055 Identities = 59/124 (47%), Positives = 82/124 (65%) Frame = -3 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 FW++FQK LGT+VNLST +HPQTDG+SERTIQTLEDMLRA +D+ G+W+ +L L Sbjct: 690 FWKAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACALDWGGNWEKYLRL----- 744 Query: 49524 NNHYHSSIQMAPYEALYGRKCRSPIGWFDVGETKLIGPDMIQQVVDKVKLIQERLLASQS 49345 ALYGR CR+P+ W VGE +L GP ++ + +++K ++ +L +Q Sbjct: 745 --------------ALYGRACRTPLCWTPVGERRLFGPIIVDETTERMKFLKIKLKEAQD 790 Query: 49344 R*KS 49333 R KS Sbjct: 791 RQKS 794 Score = 120 bits (297), Expect(2) = 6e-042 Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 1/217 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 NL+QRRW+EL DYD+ I YH GKAN V +L R S ++ + V+ + L Sbjct: 486 NLRQRRWMELVADYDLDIAYHAGKANQVADALSRRR----SEVEAERSQVDLVNMMGTLH 541 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKY 10135 V + + + +++L+S ++ ++D N K + ++ +G + Sbjct: 542 VNALSKEVEPLGLGAADQANLLSRIRLAQERDEEIKGWALNNKTE----YQTSNNGTIVV 597 Query: 10136 QERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSN 10315 R+CVPN ++ I+ ++H + FS GS K+YR L+ Y G+KKD+ ++VA Sbjct: 598 NGRVCVPNNRALKEEILREAHQSKFSIHPGSNKIYRDLKRYYHWVGMKKDVARWVAKCPT 657 Query: 10316 YQQVKVEHQRLGGLAKNIELP*WKWEIINMDFI-KCFQ 10426 Q VK EHQ GL +N+ +P WKW+ I MDF K FQ Sbjct: 658 CQLVKAEHQVPSGLLQNLPIPEWKWDHITMDFFWKAFQ 695 Score = 100 bits (247), Expect(2) = 2e-093 Identities = 43/81 (53%), Positives = 57/81 (70%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ +++ E H + +SI+PGS K+Y DL+ Y W GMKKD+A +VA+C CQ VK EHQ Sbjct: 609 LKEEILREAHQSKFSIHPGSNKIYRDLKRYYHWVGMKKDVARWVAKCPTCQLVKAEHQVP 668 Query: 49971 GGLLQEIEIPTWKWEMINMDF 49909 GLLQ + IP WKW+ I MDF Sbjct: 669 SGLLQNLPIPEWKWDHITMDF 689 Score = 80.0 bits (194), Expect(2) = 6e-042 Identities = 38/65 (58%), Positives = 51/65 (78%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L G VI Y S+ L +EKNYPTHD+E+A++VF+LKIW +LYG +V I+TD+KS Sbjct: 416 LECVLMQKGSVIAYASRQLRKHEKNYPTHDLEMAAVVFALKIWRSYLYGAKVQIYTDHKS 475 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 476 LKYIFT 481 Score = 71.0 bits (171), Expect(3) = 6e-027 Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 1/142 (0%) Frame = +2 Query: 10619 WKSFQKSQGSKLN*VLLFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYN 10795 WK+FQK+ G+++N + + + + + TI+TLE MLRAC +D+ NW+ + L Sbjct: 691 WKAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACALDWGGNWEKYLRL------ 744 Query: 10796 NSYHSSIQMAPYEALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSC 10975 ALYGR R + VGE L G +V + +++K ++ ++ Q Sbjct: 745 -------------ALYGRACRTPLCWTPVGERRLFGPIIVDETTERMKFLKIKLKEAQDR 791 Query: 10976 KKFNTDIRRRPLECEVDDWVYLK 11044 +K + RR+ LE +V+D VYLK Sbjct: 792 QKSYANKRRKELEFQVEDLVYLK 814 Score = 70.2 bits (169), Expect(3) = 6e-027 Identities = 34/79 (43%), Positives = 50/79 (63%) Frame = +1 Query: 11047 LTMKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGD 11226 +T KG RF ++ KL PR++G YK+ +RVG Y+L+LP +L A H VFH+S L K L + Sbjct: 816 MTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQLRKCLSN 875 Query: 11227 PSLIVPTKIVGIKDNLSYE 11283 V G+K+N++ E Sbjct: 876 QEESVEDVPPGLKENMTVE 894 Score = 47.3 bits (110), Expect = 0.021 Identities = 34/90 (37%), Positives = 45/90 (49%), Gaps = 4/90 (4%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP AFM +M+ VF+ FLD F YS + E H LR VL+ LR E K SK Sbjct: 312 APTAFMKMMNGVFRDFLDEFVIIFIDDILVYSKSWEAHQEHLRAVLEQLREHELFAKLSK 371 Query: 9238 *EF----CLKYVVFLGHIISGEGIRVDKEKIESY 9327 F C K + L +++ + V E+ E Y Sbjct: 372 CSFWQRSCEKNFLELKAMLTNAPVLVLPEEGEPY 405 Score = 28.6 bits (62), Expect(3) = 6e-027 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFESI 11441 I D + R K +KVLW E+ T+E E M+ +S F+ + Sbjct: 900 IMDRMTKGTRGKSRDLLKVLWNCGGREQYTWETENKMKANFSEWFKEM 947 >gb|AAF18613.1|AC005171_1 (AC005171) putative retroelement integrase [Arabidopsis thaliana] Length = 1215 Score = 347 bits (881), Expect = 8e-093 Identities = 187/424 (44%), Positives = 262/424 (61%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 IE ID + P YR P E KEL+ R+KD Sbjct: 433 IEHQIDFVPGASLPNRPAYRTNPVETKELQ--------------------------RQKD 466 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 GS +M + + +N VTVK +P+PR+DD+ D+L G+ FSKIDL+S YH++R+ E D K Sbjct: 467 GSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEGDEWK 526 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 TAF T++G Y++ V+ FG+T+A + FM LMN V + F+ +FVIV+ DDILVYS S EH Sbjct: 527 TAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSESLREHI 586 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 +HL +VL VL+ ++LYA KC F +L FLG ++ ADG++VD +K++A++ W P T Sbjct: 587 EHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPSPKTV 646 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 EVRSF LA +YRRF + F+ I APL + +K F W A E +F LKDKLT AP L Sbjct: 647 GEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMKKDVGFKWEKAQEEAFQSLKDKLTNAPVL 706 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALK 50633 L E + I CD SG+G+G VLMQ K+IA+ S +L NYPT+D +L +V AL+ Sbjct: 707 ILSEFLKTFEIECDASGIGIGAVLMQDQKLIAFFSEKLGGATLNYPTYDKELYALVRALQ 766 Query: 50632 IWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDA 50453 W+HYL+ I+TDH+SL+++ Q++L R RW+E ++ + I Y GK NVV DA Sbjct: 767 RWQHYLWPKVFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFAYVIKYKKGKDNVVADA 826 Query: 50452 LSRK 50441 LS++ Sbjct: 827 LSQR 830 Score = 96.7 bits (237), Expect = 3e-017 Identities = 59/189 (31%), Positives = 90/189 (47%) Frame = +1 Query: 9016 WALFISGYFHCFDIAPAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVL 9195 W + G H AP+ FM LM+ V + F+ +F YS + +H L VL Sbjct: 538 WLVMPFGLTH----APSTFMRLMNHVLRAFIGIFVIVYFDDILVYSESLREHIEHLDSVL 593 Query: 9196 QTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFL 9375 LR +E K FC +VFLG ++S +G++VD+EK+++ +P P + SF Sbjct: 594 NVLRKEELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPSPKTVGEVRSFH 653 Query: 9376 ALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXH 9555 LA +YRRF FS+I +PLT++ V F+ + E F+ L + Sbjct: 654 GLAGFYRRFFKDFSTIVAPLTEVMKKDVGFKWEKAQEEAFQSLKDKLTNAPVLILSEFLK 713 Query: 9556 VFIVYCHAS 9582 F + C AS Sbjct: 714 TFEIECDAS 722 Score = 52.3 bits (123), Expect(2) = 8e-005 Identities = 41/135 (30%), Positives = 60/135 (44%) Frame = -3 Query: 50157 CRLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQ 49978 C LR + E H + G K + + W MK D+ +C+ C+ K + Q Sbjct: 890 CSLRDLFVREAHGGGLMGHFGIAKTLEVMTEHFRWPHMKCDVKRICGRCNTCKQAKSKIQ 949 Query: 49977 KSGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAE 49798 +G L + IP W I+MDF+ GLPRT DSI+V+ F P+ S Sbjct: 950 PNG-LYTPLPIPKHPWNDISMDFVMGLPRT--GKDSIFVVYSPFQIVYGFNPI----SPF 1002 Query: 49797 DYVRLYVREIVRLHG 49753 D + L + E V + G Sbjct: 1003 DLIPLPLSERVSIDG 1017 Score = 46.9 bits (109), Expect(2) = 7e-008 Identities = 58/229 (25%), Positives = 90/229 (38%), Gaps = 1/229 (0%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 N + RW+E + + I Y GK NVV + L++ L L Sbjct: 796 NKRHARWVEFIETFAYVIKYKKGKDNVVA-----------------DALSQRYTLLSTLN 838 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFL-VLKENVKNQRVLAFEQGGDGVLK 10132 V++M + +KE + D F V K K F Q D L Sbjct: 839 VKLMGFEQ----------------IKEVYETDHDFQEVYKACEKFASGRYFRQ--DKFLF 880 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 Y+ RLCVPN +DL + ++H G K ++ E + +K D+ + + Sbjct: 881 YENRLCVPNC-SLRDLFVREAHGGGLMGHFGIAKTLEVMTEHFRWPHMKCDVKRICGRCN 939 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVI 10462 +Q K + Q GL + +P W I+MDF+ R +SIFV+ Sbjct: 940 TCKQAKSKIQP-NGLYTPLPIPKHPWNDISMDFVMGL--PRTGKDSIFVV 986 Score = 46.5 bits (108), Expect = 0.036 Identities = 28/84 (33%), Positives = 43/84 (50%) Frame = +2 Query: 8804 RKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVREC 8983 R+K R+C D NNVT K +P+ R+ I+L+SG H++++ E Sbjct: 463 RQKDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEG 522 Query: 8984 DVPKTNFIKRYGHYLFLVIFIVLT 9055 D KT F ++G Y +LV+ LT Sbjct: 523 DEWKTAFKTKHGLYEWLVMPFGLT 546 Score = 39.5 bits (90), Expect = 4.6 Identities = 22/61 (36%), Positives = 35/61 (57%) Frame = -1 Query: 49331 ADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPS 49152 A+ R + F++GD V++ + K RK KL PR GP++I++ I AY+LDL Sbjct: 1046 ANKGRREQIFEVGDMVWIHLR--KERFPAQRKSKLMPRIDGPFKIIKRINDNAYQLDLQD 1103 Query: 49151 D 49149 + Sbjct: 1104 E 1104 Score = 38.3 bits (87), Expect(2) = 7e-008 Identities = 27/79 (34%), Positives = 47/79 (59%) Frame = +3 Query: 9513 TDYLFDFDIAFGYSCIYSVLSCIL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKI 9692 +++L F+I S I + + ++ + K+I + S+ L NYPT+D EL +LV +L+ Sbjct: 709 SEFLKTFEIECDASGI-GIGAVLMQDQKLIAFFSEKLGGATLNYPTYDKELYALVRALQR 767 Query: 9693 WCHFLYGIRVDIFTDNKSL 9749 W H+L+ I TD++SL Sbjct: 768 WQHYLWPKVFVIHTDHESL 786 Score = 22.3 bits (46), Expect(2) = 8e-005 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -1 Query: 50201 DRVLQYEGRLCTPD 50160 D+ L YE RLC P+ Sbjct: 876 DKFLFYENRLCVPN 889 >dbj|BAA75235.1| (AB014746) polyprotein [Hordeum vulgare] Length = 265 Score = 339 bits (859), Expect = 3e-090 Identities = 162/265 (61%), Positives = 198/265 (74%) Frame = -2 Query: 51241 LDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIG 51062 LD FV+VF+DDILVYS+SEE+H HLR VL L+ +LYA SKCEFWL+ + FLGH+I Sbjct: 1 LDKFVVVFIDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 60 Query: 51061 ADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF 50882 A G+ VD + + AV W +P T T++RSFL LA YYRRF+E F+ + P+ +L +K KF Sbjct: 61 AKGVVVDPETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENFSKTARPMTQLLKKEEKF 120 Query: 50881 *WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQ 50702 W+ CE++F LK+KL +P L LP+ +++YCD S GLGCVLMQ G V+AYASRQ Sbjct: 121 VWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASCQGLGCVLMQDGHVVAYASRQ 180 Query: 50701 LRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWL 50522 L HE NYPTHDL+L VVHALKIWRHYL G +IYTDHKSL+YIF Q +L LRQRRWL Sbjct: 181 LWPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLKLRQRRWL 240 Query: 50521 ELLKDYDVDILYHLGKANVVVDALS 50447 EL+KDYDV I YH GKANVV DALS Sbjct: 241 ELIKDYDVGIHYHPGKANVVADALS 265 Score = 102 bits (252), Expect = 5e-019 Identities = 60/161 (37%), Positives = 84/161 (51%) Frame = +1 Query: 9106 LDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIIS 9285 LD F YS ++EDH LR+VL LR + K SK EF L V FLGH+IS Sbjct: 1 LDKFVVVFIDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 60 Query: 9286 GEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQF 9465 +G+ VD E + + + +P I SFL LA YYRRF++ FS + P+T++ + +F Sbjct: 61 AKGVVVDPETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENFSKTARPMTQLLKKEEKF 120 Query: 9466 Q*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHASCR 9588 S CE F+ L ++ F+VYC ASC+ Sbjct: 121 VWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASCQ 161 Score = 75.3 bits (182), Expect(2) = 2e-020 Identities = 40/79 (50%), Positives = 55/79 (68%), Gaps = 1/79 (1%) Frame = +3 Query: 9528 DFDIAFGYSCIYSVLSCIL*-NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHF 9704 DF + SC L C+L +G V+ Y S+ L +E NYPTHD+ELA++V +LKIW H+ Sbjct: 151 DFMVYCDASC--QGLGCVLMQDGHVVAYASRQLWPHEGNYPTHDLELAAVVHALKIWRHY 208 Query: 9705 LYGIRVDIFTDNKSL*YVFT 9764 L G R +I+TD+KSL Y+FT Sbjct: 209 LIGNRCEIYTDHKSLKYIFT 228 Score = 52.3 bits (123), Expect(2) = 2e-020 Identities = 23/31 (74%), Positives = 26/31 (83%) Frame = +2 Query: 9779 LKQRRWLELPKDYDMSILYHPGKANVVTHSL 9871 L+QRRWLEL KDYD+ I YHPGKANVV +L Sbjct: 234 LRQRRWLELIKDYDVGIHYHPGKANVVADAL 264 >gb|AAF13073.1|AC011621_1 (AC011621) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1661 Score = 338 bits (857), Expect = 5e-090 Identities = 187/513 (36%), Positives = 293/513 (56%), Gaps = 7/513 (1%) Frame = -2 Query: 51886 KFISYLKARKMVRKGYIYHLVRVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIE 51707 + I Y ++ ++ + + A P +Q +L D++ VF + E Sbjct: 648 RVIKYTGTAYLLELASLFESKKQEEQTALQPAIQRLL--DQYQGVFQTPQLLPPVRNR-E 704 Query: 51706 FTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGS 51527 I + + P+ I PYR + A+ E+++ +R++L IRPS SP+ +PVL V+KKDG Sbjct: 705 HAITLQEGSSPVNIRPYRYSFAQKNEIEKLVREMLNAQIIRPSVSPYSSPVLLVKKKDGG 764 Query: 51526 LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTA 51347 + ++Y+ LN+ T+ ++YP+P I++L D+L+GA FSK+DL+S Y ++R++ +D+ KTA Sbjct: 765 WRFCVDYRALNEATIPDKYPIPVIEELLDELKGATVFSKLDLKSGYFQIRMKLSDVEKTA 824 Query: 51346 FWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADH 51167 F T GHY+F V+ FG+TNA + F +MN +F+P+L FV+VF DDILVYS + H H Sbjct: 825 FKTHEGHYEFLVMPFGLTNAPSTFQSVMNDLFRPYLRKFVLVFFDDILVYSPDMKTHLKH 884 Query: 51166 LRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTE 50987 L TVL++L + YA F KC F T +++LGHII G+ D +K+EA+ W P + TE Sbjct: 885 LETVLQLLHLHQFYANFKKCTFGSTRISYLGHIISEQGVATDPEKVEAMLQWPLPKSVTE 944 Query: 50986 VRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNL 50807 +R FL YYRRFV+ + I+ PL R K F W A +F LK ++ P L L Sbjct: 945 LRGFLGFTGYYRRFVKNYGQIARPL-RDQLKKNSFDWNEAATSAFQALKAAVSALPVLVL 1003 Query: 50806 PEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIW 50627 P+ + + D SG+G+G VL Q+ ++IA+ S+ ++ +L +V A+ W Sbjct: 1004 PDFQQEFTVETDASGMGIGAVLSQNKRLIAFLSQAFSSQGRIRSVYERELLAIVKAVTKW 1063 Query: 50626 RHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALS 50447 +HYL I TD +SL+++ +QK + Q+RW L I Y G N V DALS Sbjct: 1064 KHYLSSKEFIIKTDQRSLRHLLEQKSVSTIQQRWASKLSGLKYRIEYKPGVDNKVADALS 1123 Query: 50446 RK----SMGSLTDVQP---EMREMVRDIQRLSSLGVCLAN 50348 R+ ++ LT P ++ + +IQ+ L L N Sbjct: 1124 RRPPTEALSQLTITGPPTIDLTALKAEIQQDHELSQILKN 1163 Score = 162 bits (405), Expect = 5e-037 Identities = 77/220 (35%), Positives = 127/220 (57%) Frame = -3 Query: 50124 HSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEI 49945 H++ + G+ K + L +W G++KD+ ++ C CQ K GLL + I Sbjct: 1204 HTSPIGGHEGALKTFKRLTSEVYWRGLRKDVVNYIKGCQICQENKYSTLSPAGLLSPLPI 1263 Query: 49944 PTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIV 49765 P W +++DF+ GLP + + + I V++DRL+K +HF+P++ ++A+ V ++R++V Sbjct: 1264 PQQIWSDVSLDFVEGLPSSN-RFNCILVVVDRLSKYSHFIPLKHPFTAKTVVEAFIRDVV 1322 Query: 49764 RLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRA 49585 +LHG P +++SDR F + FW K GT + ST +HPQTDG++E + LE LR Sbjct: 1323 KLHGFPNTLVSDRDRIFLSGFWSELFKLQGTGLQKSTAYHPQTDGQTEVVNRCLESYLRC 1382 Query: 49584 SIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRK 49465 SW LP E+ YN YHS+ + P++A+YGR+ Sbjct: 1383 FAGRRPTSWFQWLPWAEYWYNTSYHSATKTTPFQAVYGRE 1422 Score = 135 bits (336), Expect(2) = 5e-035 Identities = 116/425 (27%), Positives = 186/425 (43%), Gaps = 5/425 (1%) Frame = +2 Query: 9785 QRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLGVRI 9964 Q+RW I Y PG N V +L R T L + L L I Sbjct: 1094 QQRWASKLSGLKYRIEYKPGVDNKVADALSRRPP--TEALSQLTITGPPTIDLTALKAEI 1151 Query: 9965 MDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKYQER 10144 E ++ N A+ D F V DG++ + Sbjct: 1152 QQDHELSQILKNWAQGD---------HHDSDFTV----------------ADGLIYRKGC 1186 Query: 10145 LCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMY-RLLREVYTLKGLKKDIVKFVAMFSNYQ 10321 L +P ++EK H++ G++K + RL EVY +GL+KD+V ++ Q Sbjct: 1187 LVIPVGSPFIPKMLEKFHTSPIGGHEGALKTFKRLTSEVYW-RGLRKDVVNYIKGCQICQ 1245 Query: 10322 QVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQV 10501 + K GL + +P W +++DF++ S R N I V+VDRL+K SHF+ + Sbjct: 1246 ENKYSTLSPAGLLSPLPIPQQIWSDVSLDFVEGLPSSNR-FNCILVVVDRLSKYSHFIPL 1304 Query: 10502 SSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILK 10681 A+ + +I+ V +LHGF ++S+R F + W K QG+ L + + Sbjct: 1305 KHPFTAKTVVEAFIRDVVKLHGFPNTLVSDRDRIFLSGFWSELFKLQGTGLQKSTAYHPQ 1364 Query: 10682 -EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGRRGR 10858 + + + + LE LR +W +P EY YN SYHS+ + P++A+YGR Sbjct: 1365 TDGQTEVVNRCLESYLRCFAGRRPTSWFQWLPWAEYWYNTSYHSATKTTPFQAVYGREPP 1424 Query: 10859 YHIRLFKVGESGLIGLDVVHQIMDK---LKVIQERMMTTQSCKKFNTDIRRRPLECEVDD 11029 L + G+ +V + D+ L ++E + Q+ K D RR + E+D+ Sbjct: 1425 V---LLRYGDIPTNNANVEELLKDRDGMLVELRENLEIAQAQMKKAADKSRRDVAFEIDE 1481 Query: 11030 WVYLKV*P*R 11059 WVYLK+ P R Sbjct: 1482 WVYLKLRPYR 1491 Score = 80.0 bits (194), Expect = 3e-012 Identities = 51/146 (34%), Positives = 79/146 (53%), Gaps = 2/146 (1%) Frame = -1 Query: 49331 ADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKG-KLSPRYIGPYQIVRWIGKVAYELDLP 49155 AD R D+ F+I +WV+LK+ P + RK KLS RY GP++++ IG+VAY+L LP Sbjct: 1468 ADKSRRDVAFEIDEWVYLKLRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQVAYKLQLP 1527 Query: 49154 SDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIE-EFSYEEKPIAMLDRQVRRLRTKDV 48978 + +HPVFHVS L++ + P P + +++ + P +LD +R+ T Sbjct: 1528 -EHSTIHPVFHVSQLKRAV--PPSFTPQELPKILSPTLEWNTGPEKLLD--IRQSNTNSG 1582 Query: 48977 ASVKVLWQNNNREEMTREVEDEMKNKYP 48894 V V W + E T E + +YP Sbjct: 1583 PEVLVQWSGLSTLESTWEPLLTLVQQYP 1610 Score = 76.9 bits (186), Expect(2) = 5e-023 Identities = 43/126 (34%), Positives = 62/126 (49%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ F +M+ +F+P+L F YS + + H L VLQ L + F K Sbjct: 844 APSTFQSVMNDLFRPYLRKFVLVFFDDILVYSPDMKTHLKHLETVLQLLHLHQFYANFKK 903 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + +LGHIIS +G+ D EK+E+ +P P + FL YYRRFV + Sbjct: 904 CTFGSTRISYLGHIISEQGVATDPEKVEAMLQWPLPKSVTELRGFLGFTGYYRRFVKNYG 963 Query: 9418 SISSPL 9435 I+ PL Sbjct: 964 QIARPL 969 Score = 59.7 bits (142), Expect(2) = 5e-023 Identities = 34/105 (32%), Positives = 52/105 (49%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 M + I ++SP+ + VL ++KK R C+DY N T KYP+ I Sbjct: 738 MLNAQIIRPSVSPYSSPVLLVKKKDGGWRFCVDYRALNEATIPDKYPIPVIEELLDELKG 797 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 ++L+SG +++++ DV KT F GHY FLV+ LT Sbjct: 798 ATVFSKLDLKSGYFQIRMKLSDVEKTAFKTHEGHYEFLVMPFGLT 842 Score = 41.4 bits (95), Expect(2) = 5e-035 Identities = 18/43 (41%), Positives = 28/43 (64%) Frame = +1 Query: 11086 KLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMK 11214 KL R+ G +K+ R+G Y+L+LP E + +H VFH+S L + Sbjct: 1502 KLSQRYFGPFKVLHRIGQVAYKLQLP-EHSTIHPVFHVSQLKR 1543 >dbj|BAA75238.1| (AB014753) polyprotein [Morus bombycis] Length = 265 Score = 334 bits (848), Expect = 6e-089 Identities = 159/265 (60%), Positives = 197/265 (74%) Frame = -2 Query: 51241 LDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIG 51062 LD FV+VF+DDIL+YS+SEE+H HLR VL L+ +LYA SKCEFWL+ + FLGH+I Sbjct: 1 LDEFVVVFIDDILIYSQSEEDHQQHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 60 Query: 51061 ADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF 50882 A G+ VD + + AV W +P T T+VR+FL LA YYRRF+E F+ I+ P+ +L +K KF Sbjct: 61 AKGVAVDPETVTAVTDWKQPKTVTQVRNFLGLAGYYRRFIENFSKIARPMTQLLKKEEKF 120 Query: 50881 *WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQ 50702 W+ CE++F LK+K +P LP+ +++YCD S GLGCVLMQ G V+AYASRQ Sbjct: 121 VWSPQCEKAFQTLKEKPVSSPVFILPDTRKDFMVYCDASRQGLGCVLMQDGHVVAYASRQ 180 Query: 50701 LRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWL 50522 LR HE NYPTHDL+L VVHALKIWRHYL +IYTDHKSL+YIF Q +L LRQRRWL Sbjct: 181 LRPHEGNYPTHDLELAAVVHALKIWRHYLIENRCEIYTDHKSLKYIFTQSDLNLRQRRWL 240 Query: 50521 ELLKDYDVDILYHLGKANVVVDALS 50447 EL+KDYDV I +H GKANVV DALS Sbjct: 241 ELIKDYDVGIHHHPGKANVVADALS 265 Score = 99.5 bits (244), Expect(3) = 8e-043 Identities = 58/159 (36%), Positives = 83/159 (51%) Frame = +1 Query: 9106 LDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIIS 9285 LD F YS ++EDH LR+VL LR + K SK EF L V FLGH+IS Sbjct: 1 LDEFVVVFIDDILIYSQSEEDHQQHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 60 Query: 9286 GEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQF 9465 +G+ VD E + + + +P + +FL LA YYRRF++ FS I+ P+T++ + +F Sbjct: 61 AKGVAVDPETVTAVTDWKQPKTVTQVRNFLGLAGYYRRFIENFSKIARPMTQLLKKEEKF 120 Query: 9466 Q*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 S CE F+ L ++ F+VYC AS Sbjct: 121 VWSPQCEKAFQTLKEKPVSSPVFILPDTRKDFMVYCDAS 159 Score = 71.4 bits (172), Expect(3) = 8e-043 Identities = 35/65 (53%), Positives = 49/65 (74%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*-NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L +G V+ Y S+ L +E NYPTHD+ELA++V +LKIW H+L R +I+TD+KS Sbjct: 163 LGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIENRCEIYTDHKS 222 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 223 LKYIFT 228 Score = 52.7 bits (124), Expect(3) = 8e-043 Identities = 23/32 (71%), Positives = 27/32 (83%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSL 9871 NL+QRRWLEL KDYD+ I +HPGKANVV +L Sbjct: 233 NLRQRRWLELIKDYDVGIHHHPGKANVVADAL 264 >dbj|BAA75236.1| (AB014750) polyprotein [Nicotiana tabacum] Length = 265 Score = 334 bits (847), Expect = 8e-089 Identities = 160/265 (60%), Positives = 198/265 (74%) Frame = -2 Query: 51241 LDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIG 51062 LD FV+VF+D+IL+YS+S+E+H HLR VL L+ +LYA SKCEFWL+ + FLGH+I Sbjct: 1 LDEFVVVFIDNILIYSQSKEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 60 Query: 51061 ADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF 50882 A G+ VD + + AV W +P T T+VRSFL LA YYRRF+E F+ I+ P+ +L +K KF Sbjct: 61 AKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEKF 120 Query: 50881 *WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQ 50702 W+ CE++F LK+KL +P L LP+ +++YCD S GLGCVLMQ G V+AYASRQ Sbjct: 121 VWSPQCEKAFQTLKEKLVSSPVLILPDTHKDFMVYCDASRQGLGCVLMQDGHVVAYASRQ 180 Query: 50701 LRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWL 50522 LR HE NYPTHDL+L VVHALKIWRHYL G +I TDHKSL+YIF Q +L LRQRRWL Sbjct: 181 LRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEISTDHKSLKYIFTQSDLNLRQRRWL 240 Query: 50521 ELLKDYDVDILYHLGKANVVVDALS 50447 EL+KDYDV I H GKANVV DALS Sbjct: 241 ELIKDYDVGIHNHPGKANVVADALS 265 Score = 102 bits (251), Expect(3) = 2e-043 Identities = 60/159 (37%), Positives = 83/159 (51%) Frame = +1 Query: 9106 LDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIIS 9285 LD F YS +KEDH LR+VL LR + K SK EF L V FLGH+IS Sbjct: 1 LDEFVVVFIDNILIYSQSKEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 60 Query: 9286 GEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQF 9465 +G+ VD E + + + +P + SFL LA YYRRF++ FS I+ P+T++ + +F Sbjct: 61 AKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLKKEEKF 120 Query: 9466 Q*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 S CE F+ L ++ F+VYC AS Sbjct: 121 VWSPQCEKAFQTLKEKLVSSPVLILPDTHKDFMVYCDAS 159 Score = 72.6 bits (175), Expect(3) = 2e-043 Identities = 36/65 (55%), Positives = 49/65 (75%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*-NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L +G V+ Y S+ L +E NYPTHD+ELA++V +LKIW H+L G R +I TD+KS Sbjct: 163 LGCVLMQDGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEISTDHKS 222 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 223 LKYIFT 228 Score = 51.2 bits (120), Expect(3) = 2e-043 Identities = 23/32 (71%), Positives = 26/32 (80%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSL 9871 NL+QRRWLEL KDYD+ I HPGKANVV +L Sbjct: 233 NLRQRRWLELIKDYDVGIHNHPGKANVVADAL 264 >dbj|BAA75237.1| (AB014751) polyprotein [Ipomoea nil] Length = 265 Score = 320 bits (811), Expect = 1e-084 Identities = 154/265 (58%), Positives = 196/265 (73%) Frame = -2 Query: 51241 LDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIG 51062 LD FV+VF+DDIL+YS+SEE+H HLR VL L+ +LYA SKCEFWL+ + FLGH+I Sbjct: 1 LDEFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 60 Query: 51061 ADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF 50882 A G+ VD + + AV +P T T++RSFL +A YYRRF+E F+ I+ P+ +L +K +F Sbjct: 61 AKGVAVDPETVTAVTDGKQPKTVTQIRSFLGVAGYYRRFIENFSEIARPMTQLLKKEEEF 120 Query: 50881 *WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQ 50702 W+ CE++F LK+KL +P L LP+ ++++CD GLGCVLMQ G V+AYASRQ Sbjct: 121 VWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVHCDALRQGLGCVLMQDGHVVAYASRQ 180 Query: 50701 LRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWL 50522 LR HE NYPTHDL+ VVHALKI RH+L G +IYTDHKSL+YIF Q +L LRQRRWL Sbjct: 181 LRPHEGNYPTHDLESAAVVHALKIRRHHLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWL 240 Query: 50521 ELLKDYDVDILYHLGKANVVVDALS 50447 EL+KDYDV I +H GKANVV DALS Sbjct: 241 ELIKDYDVGIHHHPGKANVVADALS 265 Score = 95.2 bits (233), Expect(3) = 1e-039 Identities = 57/158 (36%), Positives = 81/158 (51%) Frame = +1 Query: 9106 LDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIIS 9285 LD F YS ++EDH LR+VL LR + K SK EF L V FLGH+IS Sbjct: 1 LDEFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 60 Query: 9286 GEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQF 9465 +G+ VD E + + +P I SFL +A YYRRF++ FS I+ P+T++ + +F Sbjct: 61 AKGVAVDPETVTAVTDGKQPKTVTQIRSFLGVAGYYRRFIENFSEIARPMTQLLKKEEEF 120 Query: 9466 Q*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHA 9579 S CE F+ L ++ F+V+C A Sbjct: 121 VWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVHCDA 158 Score = 65.2 bits (156), Expect(3) = 1e-039 Identities = 34/65 (52%), Positives = 47/65 (72%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*-NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L +G V+ Y S+ L +E NYPTHD+E A++V +LKI H L G R +I+TD+KS Sbjct: 163 LGCVLMQDGHVVAYASRQLRPHEGNYPTHDLESAAVVHALKIRRHHLIGNRCEIYTDHKS 222 Query: 9747 L*YVFT 9764 L Y+FT Sbjct: 223 LKYIFT 228 Score = 52.7 bits (124), Expect(3) = 1e-039 Identities = 23/32 (71%), Positives = 27/32 (83%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSL 9871 NL+QRRWLEL KDYD+ I +HPGKANVV +L Sbjct: 233 NLRQRRWLELIKDYDVGIHHHPGKANVVADAL 264 >gb|AAD24647.1|AC006220_3 (AC006220) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 780 Score = 317 bits (804), Expect = 9e-084 Identities = 171/444 (38%), Positives = 248/444 (55%) Frame = -2 Query: 51775 VVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEK 51596 VV EFPD+F + I++L D+ P+ PYR + E+ + + D+L Sbjct: 10 VVTEFPDIFVEPTDLPPFRAPHDHKIELLEDSNPVNQRPYRYVVHQKNEIDKIVDDMLAS 69 Query: 51595 GFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCF 51416 G I+ S+SP+ +PV+ V+KKDG+ ++ ++Y++LN +TVK+R+P+P I+DL D+L G+ + Sbjct: 70 GTIQASSSPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGSNVY 129 Query: 51415 SKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLD 51236 SKIDLR+ YH+VR+ DI KTAF T GHY++ V+ FG+TNA A F LMN FKPFL Sbjct: 130 SKIDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMNSFFKPFLR 189 Query: 51235 MFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGAD 51056 FV+VF DDIL+YS S EEH HL V V++ L+A SKC F + + +LGH I + Sbjct: 190 KFVLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLFAKMSKCAFAVPRVEYLGHFISGE 249 Query: 51055 GIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*W 50876 GI D KI+AV+ W P ++ FL L YYRRF Sbjct: 250 GIATDPAKIKAVQDWPVPVNLKQLCGFLGLTGYYRRF----------------------- 286 Query: 50875 TNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLR 50696 +V+ D G G+G VLMQ G +A+ SRQL+ Sbjct: 287 -----------------------------FVVEMDACGHGIGAVLMQEGHPLAFISRQLK 317 Query: 50695 KHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLEL 50516 + + ++ +L V+ ++ WRHYL H I TD +SL+Y+ +Q+ Q++WL Sbjct: 318 GKQLHLSIYEKELLAVIFVVRKWRHYLISSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPK 377 Query: 50515 LKDYDVDILYHLGKANVVVDALSR 50444 L ++D +I Y GK N+V DALSR Sbjct: 378 LLEFDYEIQYKQGKENLVADALSR 401 Score = 95.6 bits (234), Expect = 6e-017 Identities = 47/121 (38%), Positives = 71/121 (57%) Frame = -3 Query: 50097 GSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMIN 49918 G + ++ L++W M KDI F+ C CQ K ++ S GLLQ + IP W ++ Sbjct: 489 GKEVTHQRVKGLFYWKSMVKDIQAFIRSCGTCQQCKSDNAASPGLLQPLPIPDRIWSDVS 548 Query: 49917 MDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSI 49738 MDFI GLP + K I V++DRL+K+AHF+ + YSA + Y+ + +LHG P+SI Sbjct: 549 MDFIDGLPLSNGK-TVIMVVVDRLSKAAHFIALAHPYSAMTVAQAYLDNVFKLHGCPSSI 607 Query: 49737 I 49735 + Sbjct: 608 V 608 Score = 87.0 bits (212), Expect = 2e-014 Identities = 71/278 (25%), Positives = 128/278 (45%), Gaps = 1/278 (0%) Frame = +2 Query: 9785 QRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLGVRI 9964 Q++WL ++D I Y GK N+V +L R+ G + + D+ + ++ G Sbjct: 371 QQQWLPKLLEFDYEIQYKQGKENLVADALSRVE-GSEVLHMALSVVECDLLKEIQAGY-- 427 Query: 9965 MDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKYQER 10144 VT+G D I +L++ +++ + QG VL+ + + Sbjct: 428 ---------VTDG-------------DIQGIITILQQQADSKKHYTWSQG---VLRRKNK 462 Query: 10145 LCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSNYQQ 10324 + VPN G +D I+ H + SG ++ ++ ++ K + KDI F+ QQ Sbjct: 463 IVVPNNSGIKDTILRWLHCSGMGGHSGKEVTHQRVKGLFYWKSMVKDIQAFIRSCGTCQQ 522 Query: 10325 VKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVS 10504 K ++ GL + + +P W ++MDFI S + I V+VDRL+K++HF+ ++ Sbjct: 523 CKSDNAASPGLLQPLPIPDRIWSDVSMDFIDGLPLSNGK-TVIMVVVDRLSKAAHFIALA 581 Query: 10505 STNLAEDYAKLYIQKVERLHGF-LVFIISNRSAYFTAQL 10618 A A+ Y+ V +LHG ++S+R QL Sbjct: 582 HPYSAMTVAQAYLDNVFKLHGCPSSIVVSSRRVLVQHQL 620 Score = 83.5 bits (203), Expect(2) = 4e-025 Identities = 47/115 (40%), Positives = 60/115 (51%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA+F LM+ FKPFL F YS + E+H L V + +R K SK Sbjct: 172 APASFQSLMNSFFKPFLRKFVLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLFAKMSK 231 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRF 9402 F + V +LGH ISGEGI D KI++ +P P+ K + FL L YYRRF Sbjct: 232 CAFAVPRVEYLGHFISGEGIATDPAKIKAVQDWPVPVNLKQLCGFLGLTGYYRRF 286 Score = 74.1 bits (179), Expect = 2e-010 Identities = 39/79 (49%), Positives = 57/79 (71%), Gaps = 3/79 (3%) Frame = -1 Query: 49331 ADNRR*DLEFQIGDWVFLKVSPMKG---VMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 AD + EF++GD+VF+K+ P + VMR +K LSP+Y GPY+++ G+VAY+L Sbjct: 681 ADQHITEREFEVGDYVFVKLQPYRQQSVVMRSTQK--LSPKYFGPYKVIDRCGEVAYKLQ 738 Query: 49160 LPSDLEVVHPVFHVSMLRKCIG 49095 LP++ + VHPVFHVS LR +G Sbjct: 739 LPANSQ-VHPVFHVSQLRVLVG 759 Score = 60.1 bits (143), Expect(2) = 4e-025 Identities = 30/94 (31%), Positives = 51/94 (53%) Frame = +2 Query: 8774 SPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRS 8953 SP+ + V+ ++KK R+C+DY + N +T K ++P+ I I+LR+ Sbjct: 77 SPYASPVVLVKKKDGTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGSNVYSKIDLRA 136 Query: 8954 GCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 G H++++ D+ KT F GHY +LV+ LT Sbjct: 137 GYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLT 170 Score = 49.6 bits (116), Expect = 0.004 Identities = 29/79 (36%), Positives = 45/79 (56%) Frame = +3 Query: 42480 LRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKISSKTIHRGRILK*DGPFDVIE 42659 L +A RMK ADQH EF+VG+ V +KL P+ + + ++ + K GP+ VI+ Sbjct: 670 LMRAQHRMKQLADQHITEREFEVGDYVFVKLQPYRQQSVVMRSTQK-LSPKYFGPYKVID 728 Query: 42660 RAGEVSCMLKLSEILKISP 42716 R GEV+ L+L ++ P Sbjct: 729 RCGEVAYKLQLPANSQVHP 747 Score = 43.4 bits (100), Expect(2) = 4e-004 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = +1 Query: 11086 KLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLG 11223 KL P++ G YK+ R G Y+L+LP + VH VFH+S L +G Sbjct: 715 KLSPKYFGPYKVIDRCGEVAYKLQLPAN-SQVHPVFHVSQLRVLVG 759 Score = 29.0 bits (63), Expect(2) = 4e-004 Identities = 26/80 (32%), Positives = 41/80 (50%), Gaps = 4/80 (5%) Frame = +2 Query: 10820 MAPYEALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDK----LKVIQERMMTTQSCKKFN 10987 M PYEA+YG+ H+ + GES + VV + M + + ++ +M Q K Sbjct: 625 MTPYEAVYGQPPPLHLP-YLPGESKVA---VVARSMQERESMILFLKFHLMRAQHRMKQL 680 Query: 10988 TDIRRRPLECEVDDWVYLKV*P*R 11059 D E EV D+V++K+ P R Sbjct: 681 ADQHITEREFEVGDYVFVKLQPYR 704 >gb|AAC33526.2| (AF030881) pol polyprotein [Takifugu rubripes] Length = 1187 Score = 310 bits (787), Expect = 9e-082 Identities = 163/406 (40%), Positives = 249/406 (61%), Gaps = 8/406 (1%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVK 51479 Y ++ E + ++ + + L G IRPS+SP A FV K+DG L+ I++++LN +TVK Sbjct: 283 YNLSIPEKEVMRNYITESLASGIIRPSSSPLAAGFFFVAKEDGGLRPCIDFRKLNNITVK 342 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 N+YPLP + F+ L A+ F+K+DLR++YH V++R+ D KTAF T GH+++ V+ FG Sbjct: 343 NKYPLPLMSSTFEPLTHARVFTKLDLRNAYHLVQIRKGDEWKTAFNTHLGHFEYLVMPFG 402 Query: 51298 MTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAM 51119 ++NA AVF +L+N V + +++FV+V++DDIL++SR+ EEH H+R VL+ L +L+ Sbjct: 403 LSNAPAVFQELVNDVLRDMINVFVVVYLDDILIFSRTMEEHHQHVRLVLQRLLENRLFIK 462 Query: 51118 FSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVE 50939 KC F S+ +LG+I+ +R D KI+AV W RPT T++R FL A + RRF++ Sbjct: 463 AEKCIFHSASVGYLGYIVEEGRVRADPAKIQAVVEWPRPTDRTQLRRFLGFAGFIRRFIK 522 Query: 50938 KFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGV 50759 F+ ++APL LT + F WT E +F LKD+ T AP L P+ +++ D S Sbjct: 523 GFSQVAAPLSALTSTSRPFAWTPEAETAFSALKDRFTTAPVLAHPDPARQFIVEVDASDA 582 Query: 50758 GLGCVLMQHGKV------IAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVD 50597 G+G VL Q + AY SR+ E NY + +L V AL W+H+L G Sbjct: 583 GIGAVLSQRSEADQKIHPCAYFSRRFDPAERNYDVGNRELLAVYGALVEWKHWLEGAKHP 642 Query: 50596 --IYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRK 50441 +++DHK+L Y+ K L RQ RW L +D + + G N+ DALSR+ Sbjct: 643 FLVWSDHKNLTYVRTAKRLNPRQGRW-ALFSRFDFTLTFRPGSKNIRADALSRQ 695 Score = 180 bits (453), Expect = 1e-042 Identities = 83/227 (36%), Positives = 135/227 (58%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 +R QV+ HS+C++ +PG + ++ +WW +++D+ EFV C+ C K H+ Sbjct: 752 VRPQVLEWGHSSCFACHPGVRRTAEFVQRRFWWPNLQEDVREFVGACTVCARSKASHRSP 811 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 GLL + +P+ W + +DF+TGLP +Q D+I I+DR +K HF+ + SA + Sbjct: 812 AGLLHPLPVPSRPWSHVALDFVTGLPVSQGN-DTILTIVDRFSKGVHFVALPKLPSAAET 870 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 L V +VRLHG+P ++SDRG QFT+ W++F KG+G V+LS+ +HPQ++G++ER Sbjct: 871 AELLVSHVVRLHGIPLDVVSDRGPQFTSRVWQAFCKGIGATVSLSSGYHPQSNGQAERAN 930 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 Q +E LR SW LP +E++ N S+ M+P++ G Sbjct: 931 QAMEAALRCVTTSNPASWSKFLPWVEYSLNAMESSATGMSPFQCFLG 977 Score = 90.9 bits (222), Expect = 2e-015 Identities = 60/237 (25%), Positives = 116/237 (48%), Gaps = 1/237 (0%) Frame = +2 Query: 10136 QERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSN 10315 Q R+ VP+ Q ++E HS+ F+ G + ++ + L++D+ +FV + Sbjct: 743 QGRMFVPSSVRPQ--VLEWGHSSCFACHPGVRRTAEFVQRRFWWPNLQEDVREFVGACTV 800 Query: 10316 YQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFL 10495 + K H+ GL + +P W + +DF+ S+ +++I IVDR +K HF+ Sbjct: 801 CARSKASHRSPAGLLHPLPVPSRPWSHVALDFVTGLPVSQG-NDTILTIVDRFSKGVHFV 859 Query: 10496 QVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF- 10672 + A + A+L + V RLHG + ++S+R FT+++W++F K G+ ++ + Sbjct: 860 ALPKLPSAAETAELLVSHVVRLHGIPLDVVSDRGPQFTSRVWQAFCKGIGATVSLSSGYH 919 Query: 10673 ILKEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYG 10846 + + + +E LR +W +P +EYS N S+ M+P++ G Sbjct: 920 PQSNGQAERANQAMEAALRCVTTSNPASWSKFLPWVEYSLNAMESSATGMSPFQCFLG 977 Score = 75.3 bits (182), Expect(3) = 1e-024 Identities = 51/175 (29%), Positives = 78/175 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F L++ V + +++F +S E+H +R+VLQ L +K K Sbjct: 406 APAVFQELVNDVLRDMINVFVVVYLDDILIFSRTMEEHHQHVRLVLQRLLENRLFIKAEK 465 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F V +LG+I+ +R D KI++ +PRP + FL A + RRF+ FS Sbjct: 466 CIFHSASVGYLGYIVEEGRVRADPAKIQAVVEWPRPTDRTQLRRFLGFAGFIRRFIKGFS 525 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 +++PL+ +T T F + E F L R FIV AS Sbjct: 526 QVAAPLSALTSTSRPFAWTPEAETAFSALKDRFTTAPVLAHPDPARQFIVEVDAS 580 Score = 55.8 bits (132), Expect(3) = 1e-024 Identities = 30/89 (33%), Positives = 46/89 (50%) Frame = +2 Query: 8774 SPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRS 8953 SP A F+ K+ LR CID+ + NN+T K KYPL + ++LR+ Sbjct: 311 SPLAAGFFFVAKEDGGLRPCIDFRKLNNITVKNKYPLPLMSSTFEPLTHARVFTKLDLRN 370 Query: 8954 GCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 H +++R+ D KT F GH+ +LV+ Sbjct: 371 AYHLVQIRKGDEWKTAFNTHLGHFEYLVM 399 Score = 48.0 bits (112), Expect = 0.012 Identities = 27/61 (44%), Positives = 37/61 (60%) Frame = -1 Query: 49289 WVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLEVVHPVFHVSML 49110 W+ + P++ RK L+PR IGPY I I A LDLP+ L+ VHPVFHVS++ Sbjct: 1041 WLLARDLPLQTSQTSSRK--LNPRDIGPYTICSIINPSAVHLDLPAALK-VHPVFHVSLI 1097 Query: 49109 R 49107 + Sbjct: 1098 K 1098 Score = 30.9 bits (68), Expect(3) = 1e-024 Identities = 19/53 (35%), Positives = 32/53 (59%), Gaps = 2/53 (3%) Frame = +3 Query: 9633 EKNYPTHDIELASLVFSLKIWCHFLYGIRVD--IFTDNKSL*YVFTLK*LISNKG 9791 E+NY + EL ++ +L W H+L G + +++D+K+L YV T K L +G Sbjct: 612 ERNYDVGNRELLAVYGALVEWKHWLEGAKHPFLVWSDHKNLTYVRTAKRLNPRQG 666 >gb|AAD39271.1|AC007203_3 (AC007203) Similar to reverse-transcriptases [Arabidopsis thaliana] Length = 748 Score = 215 bits (541), Expect(2) = 1e-080 Identities = 98/181 (54%), Positives = 133/181 (73%) Frame = -3 Query: 49875 DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWR 49696 D+IWVI+DRLTKSAHFL +R T A + YV EIV+LHGVP SI+SDR ++FT+ FWR Sbjct: 422 DAIWVIVDRLTKSAHFLAIRKTDGAAVLTKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWR 481 Query: 49695 SFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNH 49516 +FQ +GT+V +ST +HPQTDG+SERTIQTLEDMLR ++D+ G W D L LIEFAYNN+ Sbjct: 482 AFQAEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDWGGHWADQLSLIEFAYNNN 541 Query: 49515 YHSSIQMAPYEALYGRKCRSPIGWFDVGETKLIGPDMIQQVVDKVKLIQERLLASQSR*K 49336 Y +SI M P+E LYGR CR+ + W VGE + G + +Q+ +++ +++ + Q R + Sbjct: 542 YQASIGMTPFEVLYGRPCRTQLCWTQVGERSIYGANYVQETTERIGVLKLNMKEVQDRHR 601 Query: 49335 S 49333 S Sbjct: 602 S 602 Score = 155 bits (389), Expect(3) = 3e-048 Identities = 82/206 (39%), Positives = 130/206 (62%), Gaps = 1/206 (0%) Frame = +2 Query: 10430 SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFT 10609 +R + ++I+VIVDRLTKS+HFL + T+ A K Y+ ++ +LHG V I+S+R + FT Sbjct: 417 ARAELDAIWVIVDRLTKSAHFLAIRKTDGAAVLTKKYVSEIVKLHGVPVSIVSDRDSKFT 476 Query: 10610 AQLWKSFQKSQGSKLN*VLLFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEY 10786 + W++FQ G+K+ + + + + + TI+TLE MLR CV+D+ +W D + LIE+ Sbjct: 477 SAFWRAFQAEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDWGGHWADQLSLIEF 536 Query: 10787 SYNNSYHSSIQMAPYEALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTT 10966 +YNN+Y +SI M P+E LYGR R + +VGE + G + V + +++ V++ M Sbjct: 537 AYNNNYQASIGMTPFEVLYGRPCRTQLCWTQVGERSIYGANYVQETTERIGVLKLNMKEV 596 Query: 10967 QSCKKFNTDIRRRPLECEVDDWVYLKV 11047 Q + D RRR LE EV + VYLK+ Sbjct: 597 QDRHRSYADKRRRELEFEVGERVYLKM 623 Score = 114 bits (282), Expect(2) = 1e-080 Identities = 59/148 (39%), Positives = 90/148 (59%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELD 49161 RS+AD RR +LEF++G+ V+LK++ ++G R + KLSPRY+GP++IV + VAY L+ Sbjct: 601 RSYADKRRRELEFEVGERVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERVVPVAYRLE 660 Query: 49160 LPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKD 48981 L + H VFHVSMLRKC+ V + + E +P +L+R+++ LR K Sbjct: 661 LTDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARPGRVLERRIKELRRKK 720 Query: 48980 VASVKVLWQNNNREEMTREVEDEMKNKY 48897 + +KVLW + E T E E MK ++ Sbjct: 721 IPLIKVLWDCDGVTEETWEPEVRMKARF 748 Score = 78.4 bits (190), Expect = 9e-012 Identities = 37/70 (52%), Positives = 52/70 (73%) Frame = -2 Query: 51457 IDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAV 51278 ID+L DQL+GA CFSKIDL S YH++ + EADI KTAF TRYGH++F V+ F A+ Sbjct: 365 IDELLDQLRGATCFSKIDLTSGYHQIPIAEADIRKTAFRTRYGHFEFVVIPFARAELDAI 424 Query: 51277 FMDLMNRVFK 51248 ++ +++R+ K Sbjct: 425 WV-IVDRLTK 433 Score = 60.5 bits (144), Expect = 2e-006 Identities = 37/115 (32%), Positives = 57/115 (49%) Frame = -1 Query: 1010 VEFVTYQFKGNAKMWWRSHVGCQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFFSLE 831 V+ + +G+A +WWRS V + QA M WA F + F KY P+ DR F L Sbjct: 44 VDLAVHFLEGDAHLWWRS-VTAKRRQAD-MFWADFVAEFNAKYCPQEALDRMEARFLELT 101 Query: 830 QGRMSLTAYEAKFRASSRYATQLCFSPKERISRFVKGLR*ELRISALQVAATTKS 666 QG S+ Y+ +F YA + + ++ RF++GLR + R+ TK+ Sbjct: 102 QGERSVREYDREFNRLLVYAGRGMEDDQAQMRRFLRGLRPDWRVRCRVSQYATKA 156 Score = 53.5 bits (126), Expect = 3e-004 Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 11/159 (6%) Frame = -1 Query: 53315 FFGSRPQDDPQKFICQMQRTLRISKASETESVELATYRLRDVDINWYESWELSRGEGAPP 53136 F G ++ + +++R SK S V+LA + L W+ S R + Sbjct: 13 FSGGTSPEEADSWRSRVERNFGSSKCSVEYLVDLAVHFLEGDAHLWWRSVTAKRRQA--D 70 Query: 53135 MIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYAPTIVADMAD 52956 M W +FV F + E RFL L + RSVREY EF+ L YA + D Sbjct: 71 MFWADFVAEFNAKYCPQEALDRMEARFLELTQGERSVREYDREFNRLLVYAGRGMEDDQA 130 Query: 52955 RVHRYVMGL----------DRYLNYSCMAVTLQPSMDIARVQ-AYAQGVE 52839 ++ R++ GL +Y + + T M +A VQ A QG + Sbjct: 131 QMRRFLRGLRPDWRVRCRVSQYATKAALVETAAELMVVAVVQPAVQQGAQ 180 Score = 50.4 bits (118), Expect(3) = 3e-048 Identities = 26/77 (33%), Positives = 44/77 (56%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPS 11232 ++G R +++ KL PR++G ++I +RV Y LEL + A H VFH+SML K L Sbjct: 626 LRGPNRSISETKLSPRYMGPFRIVERVVPVAYRLELTDVMRAFHKVFHVSMLRKCLHKDD 685 Query: 11233 LIVPTKIVGIKDNLSYE 11283 ++ ++ N++ E Sbjct: 686 EVLAKIPEDLQPNMTLE 702 Score = 39.5 bits (90), Expect = 4.6 Identities = 17/34 (50%), Positives = 24/34 (70%) Frame = +2 Query: 8939 INLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 I+L SG H++ + E D+ KT F RYGH+ F+VI Sbjct: 381 IDLTSGYHQIPIAEADIRKTAFRTRYGHFEFVVI 414 Score = 35.6 bits (80), Expect(3) = 3e-048 Identities = 15/41 (36%), Positives = 26/41 (62%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRY 11420 + + ++++LR KK+ +KVLW V E T+E E M+ R+ Sbjct: 708 VLERRIKELRRKKIPLIKVLWDCDGVTEETWEPEVRMKARF 748 >dbj|BAA89272.1| (AB025309) Pol [Alternaria alternata] Length = 1265 Score = 302 bits (766), Expect = 3e-079 Identities = 177/417 (42%), Positives = 253/417 (60%), Gaps = 8/417 (1%) Frame = -2 Query: 51691 LLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSI 51512 L D+QP + P Y M+ EL L+++L LLEKGFIR S+SP APVLF +K G L++ I Sbjct: 255 LKDSQPPWGPLYSMSRGELLVLRKELTSLLEKGFIRVSSSPAAAPVLFAKKPGGGLRLCI 314 Query: 51511 EYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRY 51332 +Y+ LN +T K+RYPLP I + + L AK F+K+D+ +++H++RV E D KTAF TR+ Sbjct: 315 DYRALNAITKKDRYPLPLIRETLNNLSKAKWFTKLDVIAAFHKIRVAEGDEWKTAFRTRF 374 Query: 51331 GHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYS-RSEEEHADHLRTV 51155 G +++ V FGM N+ + F +N + FLD F ++DD+L+Y+ S ++H +H+R V Sbjct: 375 GLFEWLVTPFGMANSPSTFQRYINWTLREFLDDFCSAYLDDVLIYTDGSLKQHQEHVRKV 434 Query: 51154 LRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGA-DGIRVDTQKIEAVKTWTRPTTPTEVRS 50978 LR LQ L KCEF + S +LG II A GI +D K+ A++ W P T VRS Sbjct: 435 LRKLQDAGLQVDIKKCEFEVKSTKYLGFIIKAGKGISMDPAKVAAIREWEAPQTVKGVRS 494 Query: 50977 FLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEG 50798 FL A +YR+F++ F+ ++APL RLT + F W + +F LK+ P L + Sbjct: 495 FLGFANFYRKFIKNFSQLAAPLTRLTGDVS-FRWGPEEQSAFDKLKEIFVSEPTLASFDP 553 Query: 50797 PDGYVIYCDTSGVGLGCVLMQHG-----KVIAYASRQLRKHENNYPTHDLKLEIVVHALK 50633 V+ D+SG +G VL Q+G + AY SR+ HE NY HD +L VV L+ Sbjct: 554 ERETVLETDSSGFAVGGVLSQYGDDGVLRPCAYFSRKNNAHECNYEIHDKELLAVVRCLE 613 Query: 50632 IWRHYLYGF-HVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVD 50456 W L + TDHK+L+Y K + L RQ RW LL Y++++LY GK NV D Sbjct: 614 EWDSELRSVERFKVITDHKNLEYFMKPRMLNERQIRWSLLLGRYNMELLYRPGKQNVRAD 673 Query: 50455 ALSRK 50441 ALSR+ Sbjct: 674 ALSRR 678 Score = 128 bits (318), Expect = 9e-027 Identities = 73/228 (32%), Positives = 115/228 (50%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 +LR Q++ H + + +PG Y L Y+W GM + I +V CS C K + Sbjct: 811 KLRTQIISGAHDSLATGHPGREVTYKILARDYFWPGMTQTIRRYVRNCSTCGRSKSWREG 870 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 GLL+ + IP W+ I+MDF+ GLP ++ ++ VI DRL+K F+P+ + Sbjct: 871 KQGLLKPLPIPAQIWKEISMDFVEGLPESEGM-TNLMVITDRLSKGTIFVPL-PNIKTDT 928 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 V+ ++ +V H +P +I SDRG QF + W + L LST +HPQTDG +ER Sbjct: 929 VVQKFIERVVAYHWLPDAITSDRGRQFVSVLWTKLCELLKINRRLSTAYHPQTDGATERM 988 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 E +R+ + W P+ + A N +S M+P+ +G Sbjct: 989 NSVWETYIRSFTNWAQNDWALLCPMAQIAINGRTATSTSMSPFFLQHG 1036 Score = 71.4 bits (172), Expect(2) = 1e-012 Identities = 76/285 (26%), Positives = 134/285 (46%), Gaps = 37/285 (12%) Frame = +2 Query: 9767 KIANLKQRRWLELPKDYDMSILYHPGKANVVTHSL-------------RRLSMGCTSILK 9907 ++ N +Q RW L Y+M +LY PGK NV +L RL ILK Sbjct: 641 RMLNERQIRWSLLLGRYNMELLYRPGKQNVRADALSRREQDLPVGADDERLQKRFVQILK 700 Query: 9908 ---------EKEELAKDVHRLVRLGVRIMDSTEGGI----VVTNGAESSLVS*VKEK*DQ 10048 E+E+L + + + + +G + T ++ L +E + Sbjct: 701 PTNSYCEELEEEDLVGAILVMATRMTTVPPTKQGSVQPSTEETTAEQNELEKLWQEAVSR 760 Query: 10049 DPIFLVLKENVKNQ-RVLAFEQG----------GDGVLKYQERLCVPNMDGHQDLIMEKS 10195 D ++ K+ +K Q R G +L Y+ R VP+ + + I+ + Sbjct: 761 DRVYQGAKKTIKAQERRFPLSLGLKCSTEDCSVEGNLLLYRGRKWVPDSEKLRTQIISGA 820 Query: 10196 HSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQRLGGLAKNIEL 10375 H + + G Y++L Y G+ + I ++V S + K + GL K + + Sbjct: 821 HDSLATGHPGREVTYKILARDYFWPGMTQTIRRYVRNCSTCGRSKSWREGKQGLLKPLPI 880 Query: 10376 P*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVE 10555 P W+ I+MDF++ S N + VI DRL+K + F+ + + + + +I++V Sbjct: 881 PAQIWKEISMDFVEGLPESEGMTN-LMVITDRLSKGTIFVPLPNIK-TDTVVQKFIERVV 938 Query: 10556 RLHGFLVFIISNRSAYFTAQLW 10621 H I S+R F + LW Sbjct: 939 AYHWLPDAITSDRGRQFVSVLW 960 Score = 65.2 bits (156), Expect(2) = 5e-019 Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 2/130 (1%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYS-WNKEDHASDLRIVLQTLRNKE*CVKFS 9234 +P+ F ++ + FLD F Y+ + + H +R VL+ L++ V Sbjct: 389 SPSTFQRYINWTLREFLDDFCSAYLDDVLIYTDGSLKQHQEHVRKVLRKLQDAGLQVDIK 448 Query: 9235 K*EFCLKYVVFLGHII-SGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDR 9411 K EF +K +LG II +G+GI +D K+ + + P K + SFL A +YR+F+ Sbjct: 449 KCEFEVKSTKYLGFIIKAGKGISMDPAKVAAIREWEAPQTVKGVRSFLGFANFYRKFIKN 508 Query: 9412 FSSISSPLTKIT 9447 FS +++PLT++T Sbjct: 509 FSQLAAPLTRLT 520 Score = 57.8 bits (137), Expect(2) = 5e-019 Identities = 35/99 (35%), Positives = 51/99 (51%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + +K FI + SP A VLF +K LR+CIDY N +T K +YPL I Sbjct: 283 LLEKGFIRVSSSPAAAPVLFAKKPGGGLRLCIDYRALNAITKKDRYPLPLIRETLNNLSK 342 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLV 9037 +++ + HK++V E D KT F R+G + +LV Sbjct: 343 AKWFTKLDVIAAFHKIRVAEGDEWKTAFRTRFGLFEWLV 381 Score = 30.1 bits (66), Expect(2) = 1e-012 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +3 Query: 9630 YEKNYPTHDIELASLVFSLKIWCHFLYGI-RVDIFTDNKSL*Y 9755 +E NY HD EL ++V L+ W L + R + TD+K+L Y Sbjct: 594 HECNYEIHDKELLAVVRCLEEWDSELRSVERFKVITDHKNLEY 636 >emb|CAA77891.1| (Z11866) Reverse Transcriptase [Cladosporium fulvum] Length = 1045 Score = 301 bits (763), Expect = 6e-079 Identities = 170/421 (40%), Positives = 253/421 (59%), Gaps = 6/421 (1%) Frame = -2 Query: 51700 IDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQ 51521 I++ +P + P Y+M+ EL+ L+E L++ L KG+IR STS G P +FV K +G L+ Sbjct: 313 INIQPGKEPPWGPLYQMSEKELQTLREWLKEKLAKGWIRRSTSSAGTPCMFVPKANGKLR 372 Query: 51520 MSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFW 51341 + +Y++LN++T+KNRYPLP I++ D+L G+ ++KIDLR +++ +R+ E + KTAF Sbjct: 373 LVQDYRKLNEITIKNRYPLPNIEEAQDRLTGSDWYTKIDLRDAFYAIRMAEGEEWKTAFR 432 Query: 51340 TRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSR-SEEEHADHL 51164 TRYG Y+F V+ G+TNA A DL+N + LD+ V+ ++DDILVY++ S +EH + Sbjct: 433 TRYGLYEFLVMPMGLTNAPASCQDLVNETLRDLLDVCVVAYMDDILVYTKGSLQEHTKQV 492 Query: 51163 RTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEV 50984 + V L KCEF + FLG II GI +D K ++++ W P T +V Sbjct: 493 QDVFERLTKSGFKTAPEKCEFHKKEVKFLGFIISTTGITIDPAKTQSIREWPEPKTVKDV 552 Query: 50983 RSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLP 50804 +SFL LA Y R+F++ ++ +AP+ LT+K + W +F LK++ AP L L Sbjct: 553 QSFLGLANYNRKFIKDYSKTAAPMTMLTRKDVNWKWGKEQTEAFKRLKEQCASAPTLRLF 612 Query: 50803 EGPDGYVIYCDTSGVGLGCVLMQ--HGK--VIAYASRQLRKHENNYPTHDLKLEIVVHAL 50636 +G I D S + +G L Q GK +AY SR++ E NY HD +L +V A+ Sbjct: 613 DGSKEVHIETDASDMAIGACLTQTHDGKRHPVAYYSRKMTTAEQNYDIHDKELLAIVAAM 672 Query: 50635 KIWRHYLYG-FHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVV 50459 + WR Y+ G + I +DHK+L Y KEL RQ RW ELL Y +I Y G N Sbjct: 673 QHWRVYVEGPPKLTILSDHKNLTYFTTTKELTRRQARWSELLGQYKFEIKYTPGTENGPA 732 Query: 50458 DALSRKS 50438 DALSR+S Sbjct: 733 DALSRRS 739 Score = 145 bits (363), Expect = 5e-032 Identities = 78/217 (35%), Positives = 120/217 (54%), Gaps = 5/217 (2%) Frame = -3 Query: 50103 NPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEM 49924 +PG++K ++ + + M+ + ++ +C +CQ K G LQ PT W+ Sbjct: 811 HPGTSKTVDLIQRSFSFPQMRLKVLRYIKKCVHCQQNKAARHAKYGHLQFRTPPTKPWDE 870 Query: 49923 INMDFITGLPRTQ*K*-----DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRL 49759 + MDFIT LPR++ + D I V++DRLTK AHF+P Y+AE L + ++R Sbjct: 871 VTMDFITKLPRSKDRVTGQAYDMILVMVDRLTKYAHFIPASEIYTAEQLGYLVLDRLIRY 930 Query: 49758 HGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASI 49579 HG P I+DR FT+N+W++ +G + LST +HP+TDG++ERT QTLE LR I Sbjct: 931 HGFPEVFITDRDKLFTSNYWKTLMGTIGIKHKLSTAYHPETDGQTERTNQTLEQYLRHYI 990 Query: 49578 IDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 + +W LP+ + A NNH + P+ R P Sbjct: 991 NYAQDNWVSLLPMAQIALNNHKSETTSTTPFMRTLARTLTYP 1032 Score = 87.4 bits (213), Expect(2) = 9e-019 Identities = 87/360 (24%), Positives = 154/360 (42%), Gaps = 6/360 (1%) Frame = +2 Query: 9782 KQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLGVR 9961 +Q RW EL Y I Y PG N +L R S ++ KE + H++++ Sbjct: 706 RQARWSELLGQYKFEIKYTPGTENGPADALSRRS----DYMEGKEPVQ---HKILKT--- 755 Query: 9962 IMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKYQE 10141 + +G + +++V + +K +Q PI QG KYQ Sbjct: 756 ---NPDGSLSANTREFNNIVRILSDKEEQFPI----------------SQG-----KYQ- 790 Query: 10142 RLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSNYQ 10321 VP D ++ I + T+ G+ K L++ ++ ++ +++++ + Q Sbjct: 791 ---VPK-DREEECIRQHHDEPTYGHP-GTSKTVDLIQRSFSFPQMRLKVLRYIKKCVHCQ 845 Query: 10322 QVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SR-----RQHNSIFVIVDRLTKSS 10486 Q K G + P W+ + MDFI S+ + ++ I V+VDRLTK + Sbjct: 846 QNKAARHAKYGHLQFRTPPTKPWDEVTMDFITKLPRSKDRVTGQAYDMILVMVDRLTKYA 905 Query: 10487 HFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VL 10666 HF+ S AE L + ++ R HGF I++R FT+ WK+ + G K Sbjct: 906 HFIPASEIYTAEQLGYLVLDRLIRYHGFPEVFITDRDKLFTSNYWKTLMGTIGIKHKLST 965 Query: 10667 LFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALY 10843 + + + + + T +TLE LR + + NW +P+ + + NN + P+ Sbjct: 966 AYHPETDGQTERTNQTLEQYLRHYINYAQDNWVSLLPMAQIALNNHKSETTSTTPFMRTL 1025 Query: 10844 GRRGRY 10861 R Y Sbjct: 1026 ARTLTY 1031 Score = 63.6 bits (152), Expect(2) = 1e-016 Identities = 41/130 (31%), Positives = 64/130 (48%), Gaps = 1/130 (0%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNK-EDHASDLRIVLQTLRNKE*CVKFS 9234 APA+ L++ + LD+ Y+ ++H ++ V + L Sbjct: 450 APASCQDLVNETLRDLLDVCVVAYMDDILVYTKGSLQEHTKQVQDVFERLTKSGFKTAPE 509 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K EF K V FLG IIS GI +D K +S +P P K++ SFL LA Y R+F+ + Sbjct: 510 KCEFHKKEVKFLGFIISTTGITIDPAKTQSIREWPEPKTVKDVQSFLGLANYNRKFIKDY 569 Query: 9415 SSISSPLTKIT 9447 S ++P+T +T Sbjct: 570 SKTAAPMTMLT 580 Score = 51.2 bits (120), Expect(2) = 1e-016 Identities = 33/102 (32%), Positives = 50/102 (48%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 K +I ++ S G +F+ K LR+ DY + N +T K +YPL I Sbjct: 347 KGWIRRSTSSAGTPCMFVPKANGKLRLVQDYRKLNEITIKNRYPLPNIEEAQDRLTGSDW 406 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+LR + +++ E + KT F RYG Y FLV+ + LT Sbjct: 407 YTKIDLRDAFYAIRMAEGEEWKTAFRTRYGLYEFLVMPMGLT 448 Score = 34.8 bits (78), Expect(2) = 9e-019 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYG-IRVDIFTDNKSL*YVFTLK 9770 + Y S+ + E+NY HD EL ++V +++ W ++ G ++ I +D+K+L Y T K Sbjct: 644 VAYYSRKMTTAEQNYDIHDKELLAIVAAMQHWRVYVEGPPKLTILSDHKNLTYFTTTK 701 >gb|AAF21678.1|AF051915_2 (AF051915) pol polyprotein [Cladosporium fulvum] Length = 1243 Score = 301 bits (763), Expect = 6e-079 Identities = 170/421 (40%), Positives = 253/421 (59%), Gaps = 6/421 (1%) Frame = -2 Query: 51700 IDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQ 51521 I++ +P + P Y+M+ EL+ L+E L++ L KG+IR STS G P +FV K +G L+ Sbjct: 313 INIQPGKEPPWGPLYQMSEKELQTLREWLKEKLAKGWIRRSTSSAGTPCMFVPKANGKLR 372 Query: 51520 MSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFW 51341 + +Y++LN++T+KNRYPLP I++ D+L G+ ++KIDLR +++ +R+ E + KTAF Sbjct: 373 LVQDYRKLNEITIKNRYPLPNIEEAQDRLTGSDWYTKIDLRDAFYAIRMAEGEEWKTAFR 432 Query: 51340 TRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSR-SEEEHADHL 51164 TRYG Y+F V+ G+TNA A DL+N + LD+ V+ ++DDILVY++ S +EH + Sbjct: 433 TRYGLYEFLVMPMGLTNAPASCQDLVNETLRDLLDVCVVAYMDDILVYTKGSLQEHTKQV 492 Query: 51163 RTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEV 50984 + V L KCEF + FLG II GI +D K ++++ W P T +V Sbjct: 493 QDVFERLTKSGFKTAPEKCEFHKKEVKFLGFIISTTGITIDPAKTQSIREWPEPKTVKDV 552 Query: 50983 RSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLP 50804 +SFL LA Y R+F++ ++ +AP+ LT+K + W +F LK++ AP L L Sbjct: 553 QSFLGLANYNRKFIKDYSKTAAPMTMLTRKDVNWKWGKEQTEAFKRLKEQCASAPTLRLF 612 Query: 50803 EGPDGYVIYCDTSGVGLGCVLMQ--HGK--VIAYASRQLRKHENNYPTHDLKLEIVVHAL 50636 +G I D S + +G L Q GK +AY SR++ E NY HD +L +V A+ Sbjct: 613 DGSKEVHIETDASDMAIGACLTQTHDGKRHPVAYYSRKMTTAEQNYDIHDKELLAIVAAM 672 Query: 50635 KIWRHYLYG-FHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVV 50459 + WR Y+ G + I +DHK+L Y KEL RQ RW ELL Y +I Y G N Sbjct: 673 QHWRVYVEGPPKLTILSDHKNLTYFTTTKELTRRQARWSELLGQYKFEIKYTPGTENGPA 732 Query: 50458 DALSRKS 50438 DALSR+S Sbjct: 733 DALSRRS 739 Score = 148 bits (371), Expect(2) = 3e-041 Identities = 78/212 (36%), Positives = 122/212 (56%), Gaps = 5/212 (2%) Frame = -3 Query: 50103 NPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEM 49924 +PG++K ++ + + M+ + ++ +C +CQ K G LQ PT W+ Sbjct: 811 HPGTSKTVDLIQRSFSFPQMRLKVLRYIKKCVHCQQNKAARHAKYGHLQFRTPPTKPWDE 870 Query: 49923 INMDFITGLPRTQ*K*-----DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRL 49759 + MDFIT LPR++ + D I V++DRLTK AHF+P Y+AE L + ++R Sbjct: 871 VTMDFITKLPRSKDRVTGQAYDMILVMVDRLTKYAHFIPASEIYTAEQLGYLVLDRLIRY 930 Query: 49758 HGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASI 49579 HG P I+DR FT+N+W++ +G + LST +HP+TDG++ERT QTLE LR I Sbjct: 931 HGFPEVFITDRDKLFTSNYWKTLMGTIGIKHKLSTAYHPETDGQTERTNQTLEQYLRHYI 990 Query: 49578 IDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGR 49468 + +W LP+ + A NNH + P+ A +G+ Sbjct: 991 NYAQDNWVSLLPMAQIALNNHKSETTSTTPFYANFGK 1027 Score = 90.9 bits (222), Expect(2) = 8e-020 Identities = 87/356 (24%), Positives = 156/356 (43%), Gaps = 6/356 (1%) Frame = +2 Query: 9782 KQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLGVR 9961 +Q RW EL Y I Y PG N +L R S ++ KE + H++++ Sbjct: 706 RQARWSELLGQYKFEIKYTPGTENGPADALSRRS----DYMEGKEPVQ---HKILKT--- 755 Query: 9962 IMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVLKYQE 10141 + +G + +++V + +K +Q PI QG KYQ Sbjct: 756 ---NPDGSLSANTREFNNIVRILSDKEEQFPI----------------SQG-----KYQ- 790 Query: 10142 RLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSNYQ 10321 VP D ++ I + T+ G+ K L++ ++ ++ +++++ + Q Sbjct: 791 ---VPK-DREEECIRQHHDEPTYGHP-GTSKTVDLIQRSFSFPQMRLKVLRYIKKCVHCQ 845 Query: 10322 QVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SR-----RQHNSIFVIVDRLTKSS 10486 Q K G + P W+ + MDFI S+ + ++ I V+VDRLTK + Sbjct: 846 QNKAARHAKYGHLQFRTPPTKPWDEVTMDFITKLPRSKDRVTGQAYDMILVMVDRLTKYA 905 Query: 10487 HFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VL 10666 HF+ S AE L + ++ R HGF I++R FT+ WK+ + G K Sbjct: 906 HFIPASEIYTAEQLGYLVLDRLIRYHGFPEVFITDRDKLFTSNYWKTLMGTIGIKHKLST 965 Query: 10667 LFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALY 10843 + + + + + T +TLE LR + + NW +P+ + + NN + P+ A + Sbjct: 966 AYHPETDGQTERTNQTLEQYLRHYINYAQDNWVSLLPMAQIALNNHKSETTSTTPFYANF 1025 Query: 10844 GR 10849 G+ Sbjct: 1026 GK 1027 Score = 63.6 bits (152), Expect(2) = 1e-016 Identities = 41/130 (31%), Positives = 64/130 (48%), Gaps = 1/130 (0%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNK-EDHASDLRIVLQTLRNKE*CVKFS 9234 APA+ L++ + LD+ Y+ ++H ++ V + L Sbjct: 450 APASCQDLVNETLRDLLDVCVVAYMDDILVYTKGSLQEHTKQVQDVFERLTKSGFKTAPE 509 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K EF K V FLG IIS GI +D K +S +P P K++ SFL LA Y R+F+ + Sbjct: 510 KCEFHKKEVKFLGFIISTTGITIDPAKTQSIREWPEPKTVKDVQSFLGLANYNRKFIKDY 569 Query: 9415 SSISSPLTKIT 9447 S ++P+T +T Sbjct: 570 SKTAAPMTMLT 580 Score = 51.2 bits (120), Expect(2) = 1e-016 Identities = 33/102 (32%), Positives = 50/102 (48%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 K +I ++ S G +F+ K LR+ DY + N +T K +YPL I Sbjct: 347 KGWIRRSTSSAGTPCMFVPKANGKLRLVQDYRKLNEITIKNRYPLPNIEEAQDRLTGSDW 406 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 I+LR + +++ E + KT F RYG Y FLV+ + LT Sbjct: 407 YTKIDLRDAFYAIRMAEGEEWKTAFRTRYGLYEFLVMPMGLT 448 Score = 48.8 bits (114), Expect(2) = 3e-041 Identities = 45/154 (29%), Positives = 68/154 (43%) Frame = -1 Query: 49349 RVDRSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAY 49170 R+ + D R+ + GD V+L +K R K KL +GP+ I + +G V Y Sbjct: 1068 RLSQRRQDERKMAPLLKEGDKVYLLTKNLK--TRRQTK-KLDHVKVGPFFIDKVVGPVNY 1124 Query: 49169 ELDLPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLR 48990 L LP D + +HPVFH+S L P D +E S+ +P A + +V ++ Sbjct: 1125 RLRLPPDAK-IHPVFHISKLE----------PADAETPCQE-SFHFEPEAENEFEVEKIL 1172 Query: 48989 TKDVASVKVLWQNNNREEMTREVEDEMKNKYPYL 48888 K V W+ + E T E + N Y L Sbjct: 1173 DKKGQRYLVKWKGYDESENTWEPRINLANCYQLL 1206 Score = 34.8 bits (78), Expect(2) = 8e-020 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYG-IRVDIFTDNKSL*YVFTLK 9770 + Y S+ + E+NY HD EL ++V +++ W ++ G ++ I +D+K+L Y T K Sbjct: 644 VAYYSRKMTTAEQNYDIHDKELLAIVAAMQHWRVYVEGPPKLTILSDHKNLTYFTTTK 701 >gb|AAA88791.1| (L34658) pol polyprotein [Fusarium oxysporum] Length = 1295 Score = 299 bits (758), Expect = 2e-078 Identities = 164/423 (38%), Positives = 261/423 (60%), Gaps = 10/423 (2%) Frame = -2 Query: 51709 EFTIDVLLDT--QPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKK 51536 ++ I+++L P F P Y ++ EL L+E + D++ KG+IRPS S G PV+FV K Sbjct: 308 DYDIEIVLKDGKNPKFFPIYNLSQDELGTLREWINDMIRKGYIRPSKSSAGFPVMFVPKP 367 Query: 51535 DGS-LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADI 51359 + + L++ ++Y+QLN++T K+R LP I +L D+L G K F+ +DL+S+Y+ +R++EAD Sbjct: 368 NSNKLRLVVDYRQLNEITEKDRTSLPLITELKDRLFGKKWFTALDLKSAYNLIRIKEADE 427 Query: 51358 PKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEE 51179 KTAF T+YG +++ V+ FG+TNA AVF ++ V + +LD+FV+ ++DDIL++S +EEE Sbjct: 428 WKTAFRTKYGLFEYLVMPFGLTNAPAVFQRMITNVLREYLDIFVVCYLDDILIFSDTEEE 487 Query: 51178 HADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPT 50999 H +H+ VL+ LQ + +K F + + +LGH I + IR+D +KI AV W PT Sbjct: 488 HTEHVHKVLKALQDANMLVEPTKSHFHQSQVTYLGHEISHNEIRMDRRKIAAVAEWKVPT 547 Query: 50998 TPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAP 50819 + E +SFL A YYRRF++ F+ + PL +T+K +F W + + +F LK +T P Sbjct: 548 SVKETQSFLGFANYYRRFIKDFSKTAIPLTEITKKDKQFQWNDKAQEAFEKLKSAITSEP 607 Query: 50818 FLNLPEGPDGYVIYCDTSGVGLGCVLMQHG-----KVIAYASRQLRKHENNYPTHDLKLE 50654 L + + + D S LG + Q IA+ S ++ E NYP +D + Sbjct: 608 VLVMFDPDRQVELETDASDFALGGQIGQRDDNGVLHPIAFYSHKMHGAELNYPIYDKEFL 667 Query: 50653 IVVHALKIWRHYLYG--FHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 +V+ K +RHYL G V ++TDHK++ Y +EL RQ R+ E L ++D I + Sbjct: 668 AIVNCFKEFRHYLRGSKHPVKVFTDHKNIAYFATTQELNRRQLRYAEYLCEFDFTIAHCK 727 Query: 50479 GKANVVVDALSRK 50441 G N DA+SR+ Sbjct: 728 GTDNGRADAISRR 740 Score = 151 bits (378), Expect(2) = 5e-042 Identities = 90/251 (35%), Positives = 132/251 (51%), Gaps = 5/251 (1%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 R+ ++ + E H+ + G TK L+ L + K + + + QC C K + K Sbjct: 862 RVEQEFIYEIHAHPLHGHQGVTKTMKRLQELGYRHFKKGQVEKVIKQCDLCAKTKAQRHK 921 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*-----DSIWVIIDRLTKSAHFLPVRTT 49810 G LQ + + W+ I MDFIT LP ++ DSI VI+DRLTK +++LP R Sbjct: 922 PYGQLQPLPVAQRPWDSITMDFITKLPLSEEPSTGIFYDSIMVIVDRLTKFSYYLPYREA 981 Query: 49809 YSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDG 49630 AE+ ++ R IV +HG+PT I+SDRG F FW+S LG L+T F PQ DG Sbjct: 982 TDAEELSYVFYRHIVSIHGLPTEILSDRGPTFAATFWQSLMARLGLNHRLTTAFRPQVDG 1041 Query: 49629 KSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPI 49450 ++ER Q LE LR I + W + LP+ + AYN Y+ S ++ P A +G +P Sbjct: 1042 QTERMNQVLEQYLRCYINYEQNDWVEKLPIAQLAYNTAYNESTKLTPAYANFG---FTPN 1098 Query: 49449 GWFDVGETKLIGPDMI 49402 + + K I P I Sbjct: 1099 AYHNARPEKSINPAAI 1114 Score = 83.1 bits (202), Expect = 3e-013 Identities = 51/149 (34%), Positives = 77/149 (51%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F ++ V + +LD+F +S +E+H + VL+ L++ V+ +K Sbjct: 451 APAVFQRMITNVLREYLDIFVVCYLDDILIFSDTEEEHTEHVHKVLKALQDANMLVEPTK 510 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F V +LGH IS IR+D+ KI + + P K SFL A YYRRF+ FS Sbjct: 511 SHFHQSQVTYLGHEISHNEIRMDRRKIAAVAEWKVPTSVKETQSFLGFANYYRRFIKDFS 570 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFREL 9504 + PLT+IT QFQ ++ + F +L Sbjct: 571 KTAIPLTEITKKDKQFQWNDKAQEAFEKL 599 Score = 76.5 bits (185), Expect = 3e-011 Identities = 62/225 (27%), Positives = 108/225 (47%), Gaps = 9/225 (4%) Frame = +2 Query: 10172 QDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQRLG 10351 Q+ I E H+ G K + L+E+ K + K + + K + + Sbjct: 865 QEFIYE-IHAHPLHGHQGVTKTMKRLQELGYRHFKKGQVEKVIKQCDLCAKTKAQRHKPY 923 Query: 10352 GLAKNIELP*WKWEIINMDFIKCFQ*SRRQ-----HNSIFVIVDRLTKSSHFLQVSSTNL 10516 G + + + W+ I MDFI S ++SI VIVDRLTK S++L Sbjct: 924 GQLQPLPVAQRPWDSITMDFITKLPLSEEPSTGIFYDSIMVIVDRLTKFSYYLPYREATD 983 Query: 10517 AEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILK---EV 10687 AE+ + ++ + + +HG I+S+R F A W+S G LN L + + Sbjct: 984 AEELSYVFYRHIVSIHGLPTEILSDRGPTFAATFWQSLMARLG--LNHRLTTAFRPQVDG 1041 Query: 10688 EKQCTIKTLEYMLRACVIDFKVN-WDDNMPLIEYSYNNSYHSSIQMAPYEALYG 10846 + + + LE LR C I+++ N W + +P+ + +YN +Y+ S ++ P A +G Sbjct: 1042 QTERMNQVLEQYLR-CYINYEQNDWVEKLPIAQLAYNTAYNESTKLTPAYANFG 1094 Score = 48.8 bits (114), Expect(2) = 5e-042 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 6/134 (4%) Frame = -1 Query: 49304 FQIGDWVFLKVSPMKGVMRLDRKG-KLSPRYIGPYQIVRWIGKVAYELDLPSDLEVVHPV 49128 F GD V+L +K DR KL ++IGPY++++ I + Y+LDLP + +HP+ Sbjct: 1152 FSEGDMVYLATKNIK----TDRPSHKLDYKFIGPYKVLQKISENNYKLDLPPKVR-LHPI 1206 Query: 49127 FHVSMLRKCIGDPSRVFPIDDVQV-----IEEFSYEEKPIAMLDRQVRRLRTKDVASVKV 48963 FHVS+L D +QV E S E A R R++ + +K Sbjct: 1207 FHVSLLESA---------ADTIQVKTGNEPREISGPEVYEAEAIRDTRKINGQREYLIK- 1256 Query: 48962 LWQNNNREEMTREVEDEMKN 48903 W+N E T E + N Sbjct: 1257 -WKNYPENENTWEPPKHLVN 1275 >dbj|BAA78625.1| (AB028236) Pol (reverse transcriptase-RNase H-integrase) [Tricholoma nauseosum] Length = 1057 Score = 296 bits (750), Expect = 2e-077 Identities = 176/460 (38%), Positives = 262/460 (56%), Gaps = 11/460 (2%) Frame = -2 Query: 51817 HDINAEAPTLQSVLV-VDEFPDVFXXXXXXXXXXXKI-EFTIDVLLDTQPIFIPPYRMAP 51644 H NA + S+L + EF DVF K + I++ P Y ++P Sbjct: 46 HKNNAAKSSTNSLLPHLHEFEDVFSKESFDSLPARKPWDHAIELTPGATPSSCKVYPLSP 105 Query: 51643 AELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPL 51464 E ++L + + + L G IRPS SP +P FV+KKDGSL+ +Y++LN +TVKNRYPL Sbjct: 106 EEQRQLDQFIDEHLASGRIRPSKSPMASPFFFVKKKDGSLRPVQDYRRLNNITVKNRYPL 165 Query: 51463 PRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNAL 51284 P I +L +QL GA+ F+K+D+R Y+ VR++E D K AF T G ++ V+ FG+TN+ Sbjct: 166 PLISELVNQLHGARYFTKLDVRWGYNNVRIKEGDEWKAAFRTNRGLFELLVMFFGLTNSP 225 Query: 51283 AVFMDLMNRVFKP-FLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKC 51107 A F +MN +F L+ V +++DDIL+++R EEH R VL L+ KLY KC Sbjct: 226 ATFQTMMNDIFHDLILEGVVCIYLDDILIFTRMVEEHRRITRLVLERLRRYKLYLHQDKC 285 Query: 51106 EFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFAL 50927 EF T + +LG II + +D K+ V W PT EV+SFL +YRRF++ F+ Sbjct: 286 EFERTKIEYLGLIISEGQVEMDPIKVNRVTAWPTPTNKKEVQSFLGFINFYRRFIKDFSH 345 Query: 50926 ISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGC 50747 + L LT K A + W NA + +F LK+ +T AP L + + + D+S +G Sbjct: 346 HARLLFDLTGKEA-WRWDNAQQEAFEKLKEMVTSAPILTFADDLRPFRVEADSSDFAMGA 404 Query: 50746 VLMQHG------KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYG--FHVDIY 50591 VL Q +A+ S+ L E NY HD ++ ++ AL+ WRH+L G V+I+ Sbjct: 405 VLSQQSPEDQKWHPVAFYSKSLSAVERNYEIHDKEMLAIMRALEEWRHFLEGAQHKVEIW 464 Query: 50590 TDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKS 50438 TDHK+L+Y K+L RQ RW L +D + + G++ DALSR++ Sbjct: 465 TDHKNLEYFMTAKKLNRRQARWSLYLSRFDFSLHHRPGRSMGKTDALSRRA 515 Score = 174 bits (436), Expect = 1e-040 Identities = 85/231 (36%), Positives = 130/231 (55%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 LRR+++ + H + + +PG K YWW M + I ++ C C K+ +K Sbjct: 610 LRRRIISQHHDSQIAGHPGRWKTLELTSRNYWWPQMSRLIGQYCRTCDLCLCTKVPRRKP 669 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 G L + +P +W+++++DF+ LP + D++ +D + K AHF+P TT SA Sbjct: 670 IGELHPLPVPESRWDVVSVDFVVELPESN-GFDAVMCTVDSVGKRAHFIPTHTTVSALGA 728 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 RLY+ + +LHG+P + +SDRG QF F R + LG ++ ST +HPQTDG++ER Sbjct: 729 ARLYLHHVWKLHGLPGAFLSDRGPQFMAEFTRELYRLLGIKLLASTAYHPQTDGQTERVN 788 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCR 49459 Q LE +R + + + WDD LPL EF YNNH H+S Q P+ GR R Sbjct: 789 QELEQYIRLFVNERQDDWDDLLPLAEFGYNNHVHASTQQTPFLLDTGRHPR 839 Score = 85.0 bits (207), Expect(2) = 1e-021 Identities = 84/364 (23%), Positives = 160/364 (43%), Gaps = 9/364 (2%) Frame = +2 Query: 9767 KIANLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLV 9946 K N +Q RW +D S+ + PG++ T +L R + + + + D +V Sbjct: 477 KKLNRRQARWSLYLSRFDFSLHHRPGRSMGKTDALSRRA--------DHGDGSGDNQNIV 528 Query: 9947 RLGVRIMDSTEGGIVVTNGAESSLVS*VKEK*----DQDPIFLVLKENVKNQ----RVLA 10102 L + + G E ++ + +D + +KE K R Sbjct: 529 LLQPDLFTIRALEGIAPQGEERDILRDICHANCSGLHEDVVARAVKELRKGSTLSLRAAE 588 Query: 10103 FEQGGDGVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKK 10282 + + D +L +++R+ VPN + I+ + H + + G K L Y + + Sbjct: 589 WAEKED-LLYFRDRIYVPNDPDLRRRIISQHHDSQIAGHPGRWKTLELTSRNYWWPQMSR 647 Query: 10283 DIVKFVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVI 10462 I ++ KV ++ G + +P +W+++++DF+ S +++ Sbjct: 648 LIGQYCRTCDLCLCTKVPRRKPIGELHPLPVPESRWDVVSVDFVVELPESNG-FDAVMCT 706 Query: 10463 VDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQ 10642 VD + K +HF+ +T A A+LY+ V +LHG +S+R F A+ + + Sbjct: 707 VDSVGKRAHFIPTHTTVSALGAARLYLHHVWKLHGLPGAFLSDRGPQFMAEFTRELYRLL 766 Query: 10643 GSKLN*VLLFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQ 10819 G KL + + + + + + LE +R V + + +WDD +PL E+ YNN H+S Q Sbjct: 767 GIKLLASTAYHPQTDGQTERVNQELEQYIRLFVNERQDDWDDLLPLAEFGYNNHVHASTQ 826 Query: 10820 MAPYEALYGRRGR 10858 P+ GR R Sbjct: 827 QTPFLLDTGRHPR 839 Score = 51.9 bits (122), Expect = 8e-004 Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 4/104 (3%) Frame = -1 Query: 49307 EFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLEVVHPV 49128 ++++GD V+L S + KL+ R++GP+ IV+ +G AY L LP+ + +HPV Sbjct: 892 QYKVGDRVYLDSSDISTTRP---SKKLAHRFLGPFPIVKCVGTHAYRLRLPASMSRLHPV 948 Query: 49127 FHVSMLRKCIGD--PSR-VFPIDDVQVIE-EFSYEEKPIAMLDRQVRR 48996 FHV L D P R P VIE E YE K I LD ++ R Sbjct: 949 FHVVKLLPAPPDLFPGRHSHPPPPPTVIEGEPQYEVKSI--LDSRLHR 994 Score = 51.2 bits (120), Expect(2) = 7e-012 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 1/130 (0%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPF-LDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFS 9234 +PA F +M+ +F L+ ++ E+H R+VL+ LR + + Sbjct: 224 SPATFQTMMNDIFHDLILEGVVCIYLDDILIFTRMVEEHRRITRLVLERLRRYKLYLHQD 283 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K EF + +LG IIS + +D K+ ++P P K + SFL +YRRF+ F Sbjct: 284 KCEFERTKIEYLGLIISEGQVEMDPIKVNRVTAWPTPTNKKEVQSFLGFINFYRRFIKDF 343 Query: 9415 SSISSPLTKIT 9447 S + L +T Sbjct: 344 SHHARLLFDLT 354 Score = 47.6 bits (111), Expect(2) = 7e-012 Identities = 29/94 (30%), Positives = 45/94 (47%) Frame = +2 Query: 8774 SPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRS 8953 SP + F++KK LR DY + NN+T K +YPL I +++R Sbjct: 129 SPMASPFFFVKKKDGSLRPVQDYRRLNNITVKNRYPLPLISELVNQLHGARYFTKLDVRW 188 Query: 8954 GCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 G + ++++E D K F G + LV+F LT Sbjct: 189 GYNNVRIKEGDEWKAAFRTNRGLFELLVMFFGLT 222 Score = 46.5 bits (108), Expect(2) = 1e-021 Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL*YVFTLK 9770 + + SK L E+NY HD E+ +++ +L+ W HFL G +V+I+TD+K+L Y T K Sbjct: 419 VAFYSKSLSAVERNYEIHDKEMLAIMRALEEWRHFLEGAQHKVEIWTDHKNLEYFMTAK 477 Score = 41.4 bits (95), Expect = 1.2 Identities = 18/42 (42%), Positives = 25/42 (58%) Frame = +1 Query: 11086 KLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLM 11211 KL RF+G + I K VG Y L LP ++ +H VFH+ L+ Sbjct: 914 KLAHRFLGPFPIVKCVGTHAYRLRLPASMSRLHPVFHVVKLL 955 >emb|CAA25702.1| (X01472) ORF 2, pot. reverse transcriptase [Drosophila melanogaster] Length = 1058 Score = 294 bits (745), Expect = 7e-077 Identities = 152/405 (37%), Positives = 241/405 (58%), Gaps = 6/405 (1%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGS-----LQMSIEYKQLN 51494 Y A +E++ Q++D+L +G IR S SP+ +P+ V KK + ++ I+Y++LN Sbjct: 213 YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272 Query: 51493 KVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFR 51314 ++TV +R+P+P +D++ +L F+ IDL +H++ + + KTAF T++GHY++ Sbjct: 273 EITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYL 332 Query: 51313 VLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQ 51134 + FG+ NA A F MN + +P L+ +V++DDI+V+S S +EH L V L Sbjct: 333 RMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKA 392 Query: 51133 KLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YY 50954 L KCEF FLGH++ DGI+ + +KIEA++ + PT P E+++FL L YY Sbjct: 393 NLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYY 452 Query: 50953 RRFVEKFALISAPLIRLTQKAAKF*WTN-ACERSF*LLKDKLTIAPFLNLPEGPDGYVIY 50777 R+F+ FA I+ P+ + +K K TN + +F LK ++ P L +P+ + + Sbjct: 453 RKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLT 512 Query: 50776 CDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVD 50597 D S V LG VL Q G ++Y SR L +HE NY T + +L +V A K +RHYL G H + Sbjct: 513 TDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFE 572 Query: 50596 IYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 I +DH+ L ++++ K+ + RW L ++D DI Y GK N V DALSR Sbjct: 573 ISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623 Score = 83.1 bits (202), Expect(2) = 1e-019 Identities = 42/128 (32%), Positives = 69/128 (53%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M+ + +P L+ +S + ++H L +V + L ++ K Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF + FLGH+++ +GI+ + EKIE+ +P P PK I +FL L YYR+F+ F+ Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460 Query: 9418 SISSPLTK 9441 I+ P+TK Sbjct: 461 DIAKPMTK 468 Score = 41.8 bits (96), Expect(2) = 1e-019 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKK-----K*YLRICIDYLQFNNVTTKKKYPLLRIYGXX 8905 M ++ I + SP+ + + + KK K RI IDY + N +T ++P+ + Sbjct: 230 MLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEIL 289 Query: 8906 XXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFL 9034 I+L G H++++ V KT F ++GHY +L Sbjct: 290 GKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYL 332 >gb|AAF48015.1| (AE003485) CG2485 gene product [Drosophila melanogaster] Length = 1062 Score = 291 bits (737), Expect = 6e-076 Identities = 188/567 (33%), Positives = 303/567 (53%), Gaps = 17/567 (2%) Frame = -2 Query: 51835 YHLVRVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPY 51656 + +R+ +N+E T L +FP++F +++ +I D P+ P+ Sbjct: 135 FSTLRLELLNSEETTAFKKLC-KQFPNIFYKEGDKLTFTNRVKHSIKTT-DEIPVHKRPF 192 Query: 51655 RMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKK-DGS----LQMSIEYKQLNK 51491 R +PAE E+ +Q+ LLE+ IR S SPW APV V KK D S ++ ++++QLN Sbjct: 193 RYSPAEKTEITDQINKLLEQDIIRHSHSPWSAPVFLVPKKLDASNKKKWRLVVDFRQLND 252 Query: 51490 VTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRV 51311 T+K+RYP+P I+++ D+L A+ FS +DL S YH++ V D KTAF GH++F Sbjct: 253 KTIKDRYPMPNINEILDKLGRAQYFSALDLASGYHQIEVEPKDRSKTAFSAVGGHFEFIR 312 Query: 51310 LSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQK 51131 + FG++NA A F +M+ V F F ++++DDI+V+S S +EH +HL ++ + L Sbjct: 313 MPFGLSNAPATFQRVMDNVLAEFNGKFCLIYLDDIIVFSTSLQEHINHLSSIFKKLTLAN 372 Query: 51130 LYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYR 50951 L K EF L +LGHI+ G++ + +KIE +K + P T E++SFL L YYR Sbjct: 373 LKLQPDKSEFLKKELEYLGHIVTEKGVKPNPKKIETIKAFPMPKTRKEIKSFLGLLGYYR 432 Query: 50950 RFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD 50771 RF+ FA I+ PL + + + + ++F K L P L P+ +++ D Sbjct: 433 RFIRDFAKITKPLTQQLKGKSDVTIDDNYIKTFEFCKTLLCNDPILQYPDFTKSFILTTD 492 Query: 50770 TSGVGLGCVLMQ----HGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFH 50603 S V +G VL Q + + IAYASR L + E +Y T +L +V A+K +R YL+G Sbjct: 493 ASNVAIGAVLSQGTVGNDRPIAYASRTLSESETHYATIKKELLAIVWAVKYFRPYLFGNK 552 Query: 50602 VDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLT 50423 + TDHK L ++ KE RW L +YD +++Y G NVV DALSR + T Sbjct: 553 FLLVTDHKPLVWLKNLKEPNSMLVRWKLQLLEYDCEVIYKKGSQNVVADALSRIVVELNT 612 Query: 50422 DVQPEMREMVRDIQRLSS--------LGVCLANSEDSGVSI*EVAKSSIIDEVKRHQYKD 50267 + E R + D + L+S + + L ++ + + K+ + + R + D Sbjct: 613 N---EARPITSDTEILTSNRPINEFAIQIILKIADCANDLLETPFKNKLRRIISRPLFDD 669 Query: 50266 PILAQYRDAALQKENTHLRIHLTECYNMKVDCVHPILQATTAGY 50135 + AL+ TH I+ T+ V ++ A + Y Sbjct: 670 QTMIDVLKTALRSNKTH-AIYTTDTIFESVQKIYAAFFAPSKSY 712 Score = 73.7 bits (178), Expect(2) = 1e-018 Identities = 43/128 (33%), Positives = 68/128 (52%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F +M V F F +S + ++H + L + + L ++ K Sbjct: 320 APATFQRVMDNVLAEFNGKFCLIYLDDIIVFSTSLQEHINHLSSIFKKLTLANLKLQPDK 379 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF K + +LGHI++ +G++ + +KIE+ +FP P K I SFL L YYRRF+ F+ Sbjct: 380 SEFLKKELEYLGHIVTEKGVKPNPKKIETIKAFPMPKTRKEIKSFLGLLGYYRRFIRDFA 439 Query: 9418 SISSPLTK 9441 I+ PLT+ Sbjct: 440 KITKPLTQ 447 Score = 60.5 bits (144), Expect = 2e-006 Identities = 45/193 (23%), Positives = 92/193 (47%), Gaps = 7/193 (3%) Frame = -3 Query: 50046 MKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSI 49867 +K+ +++ + +C CQ +K + Q + Q E P +++++D + +T I Sbjct: 762 LKERVSQLINKCDICQTLKYDRQPQKPIFQLTETPNKPLDIVHIDLYSINNKT------I 815 Query: 49866 WVIIDRLTKSA--HFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRS 49693 IID+ +K A + +P R + + ++ + + HG+P +I+ D+G +F ++ Sbjct: 816 LTIIDKFSKFAEGYTIPSRDSINITKHMMFFFKT----HGIPKTIVCDQGPEFAGIIFKE 871 Query: 49692 FQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKG---SWDDHLPLIE--FA 49528 +++++ ++ ER +L ++ R K + D L E Sbjct: 872 LCNQYNITLHVTSFQQSSSNAPVERLHSSLTEIYRIIFEKKKALKLNLDHDCILTETFIT 931 Query: 49527 YNNHYHSSIQMAPYEALYGR 49468 YNN HSS ++ PYE GR Sbjct: 932 YNNAIHSSTKLTPYEVFTGR 951 Score = 47.6 bits (111), Expect(2) = 1e-018 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKK-----K*YLRICIDYLQFNNVTTKKKYPLLRIYGXX 8905 + ++ I + SPW A V + KK K R+ +D+ Q N+ T K +YP+ I Sbjct: 209 LLEQDIIRHSHSPWSAPVFLVPKKLDASNKKKWRLVVDFRQLNDKTIKDRYPMPNINEIL 268 Query: 8906 XXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFL 9034 ++L SG H+++V D KT F GH+ F+ Sbjct: 269 DKLGRAQYFSALDLASGYHQIEVEPKDRSKTAFSAVGGHFEFI 311 >gb|AAF79797.1|AC020646_20 (AC020646) T32E20.30 [Arabidopsis thaliana] Length = 1397 Score = 291 bits (736), Expect = 8e-076 Identities = 158/422 (37%), Positives = 242/422 (56%) Frame = -2 Query: 51709 EFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDG 51530 E I +L T+ I + PYR A + ++ + ++L+ G IR S SP+ +PVL V+KKD Sbjct: 517 EHAISLLPGTRAISVRPYRYPHAHKEAMEGLVSEMLDNGIIRASKSPFSSPVLLVKKKDQ 576 Query: 51529 SLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKT 51350 S + ++Y+ LN+ T+ N++P+P ID L D+L GA FSK+DLR+ YH++R++ DI KT Sbjct: 577 SWRFCVDYRALNRATIPNKFPIPMIDQLLDELHGAIIFSKLDLRAGYHQIRMKVEDIEKT 636 Query: 51349 AFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHAD 51170 F T GH++F V+ FG++NA A F MN + +PFL FV+VF DDIL+YSR+E+EH + Sbjct: 637 TFRTHDGHFEFLVMPFGLSNAPATFQSSMNDMLRPFLRKFVLVFFDDILIYSRNEQEHEE 696 Query: 51169 HLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPT 50990 HL VL+VL+ + YA K HI G+ D K A+ W P + Sbjct: 697 HLAMVLKVLEEHQFYANRKKPY----------HI--TQGVSTDPTKTVAMTKWVTPQSVK 744 Query: 50989 EVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLN 50810 E+R FL L YYRRF++ + ++ PL L +K + F W+ + + +F LK ++ AP L Sbjct: 745 ELRGFLGLTGYYRRFLKGYGTLARPLTELLKKDS-FVWSESAQEAFDALKRAMSTAPVLA 803 Query: 50809 LPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKI 50630 LP+ GKV S++ K P ++ +L +V +++ Sbjct: 804 LPD----------------------FGKVHGLTSKEQLK-----PVYERELMAIVLSIQK 836 Query: 50629 WRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDAL 50450 W+HYL G ++TD KSL+++ +Q+E+ + ++WL L Y+ DILY LG N D L Sbjct: 837 WKHYLMGRRFVLHTDQKSLKFLQEQREVSMDYQKWLTKLLHYEFDILYKLGVDNKAADGL 896 Query: 50449 SR 50444 SR Sbjct: 897 SR 898 Score = 177 bits (444), Expect(2) = 7e-058 Identities = 92/239 (38%), Positives = 135/239 (55%) Frame = -3 Query: 50139 VMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLL 49960 ++ E HS + G K ++ + W+GM KDI +FVA+C CQ K GLL Sbjct: 977 ILAEYHSGLLGGHSGVLKTMKRIQQSFHWEGMMKDIQKFVAKCEMCQRQKYSTLSPAGLL 1036 Query: 49959 QEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLY 49780 Q + IPT WE I++DF+ GLP DRL+K HF+ ++ ++A D R++ Sbjct: 1037 QPLPIPTQVWEDISLDFVEGLP-------------DRLSKYGHFIGLKHPFNAVDVARIF 1083 Query: 49779 VREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLE 49600 + E+V+LHG P SI+SDR F ++FW+ K GT++ ST FHPQTDG++E +TLE Sbjct: 1084 IHEVVKLHGFPASIVSDRDNTFLSSFWKDCFKLSGTKLKYSTAFHPQTDGQTEVLNRTLE 1143 Query: 49599 DMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVGETK 49423 LR +W +LP E YN+ +H++I+ P++ LYGR PI F+ TK Sbjct: 1144 TYLRCFASAHPKTWFQYLPRAELWYNSSFHTTIKTTPFKVLYGRD-PPPIMRFEANSTK 1201 Score = 128 bits (319), Expect(3) = 4e-036 Identities = 93/314 (29%), Positives = 155/314 (48%), Gaps = 2/314 (0%) Frame = +2 Query: 10118 DGVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKF 10297 +G L ++RL +P LI+ + HS SG +K + +++ + +G+ KDI KF Sbjct: 956 EGRLWKKQRLIIPKDSKFLPLILAEYHSGLLGGHSGVLKTMKRIQQSFHWEGMMKDIQKF 1015 Query: 10298 VAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLT 10477 VA Q+ K GL + + +P WE I++DF++ + DRL+ Sbjct: 1016 VAKCEMCQRQKYSTLSPAGLLQPLPIPTQVWEDISLDFVE-------------GLPDRLS 1062 Query: 10478 KSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN 10657 K HF+ + A D A+++I +V +LHGF I+S+R F + WK K G+KL Sbjct: 1063 KYGHFIGLKHPFNAVDVARIFIHEVVKLHGFPASIVSDRDNTFLSSFWKDCFKLSGTKLK 1122 Query: 10658 *VLLFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYE 10834 F + + + + +TLE LR W +P E YN+S+H++I+ P++ Sbjct: 1123 YSTAFHPQTDGQTEVLNRTLETYLRCFASAHPKTWFQYLPRAELWYNSSFHTTIKTTPFK 1182 Query: 10835 ALYGRRGRYHIRLFKVGESGLIGLDVVHQIMD-KLKVIQERMMTTQSCKKFNTDIRRRPL 11011 LYGR +R F+ + L+ + + D L I+E ++ Q K N D RR + Sbjct: 1183 VLYGRDPPPIMR-FEANSTKNCELEGLLKQRDLMLADIKEHLVNAQQLMKNNDDKHRREV 1241 Query: 11012 ECEVDDWVYLKV*P*R 11059 E + + V+LK+ P R Sbjct: 1242 EFDTRNRVFLKLRPYR 1257 Score = 76.1 bits (184), Expect(2) = 7e-058 Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 1/151 (0%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRK-GKLSPRYIGPYQIVRWIGKVAYEL 49164 +++ D R ++EF + VFLK+ P + R KL+ +Y GP++I+ IGKVAY L Sbjct: 1231 KNNDDKHRREVEFDTRNRVFLKLRPYRQNSVTKRVCQKLAAKYFGPFEIMERIGKVAYRL 1290 Query: 49163 DLPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTK 48984 LP + +H VFHVS L++ +GD +V P+ +V + + P A+L+ R Sbjct: 1291 KLPEGSK-IHLVFHVSQLKQVLGDHHQVIPLPEVLTADN-EFVVVPEAVLE---TRYNED 1345 Query: 48983 DVASVKVLWQNNNREEMTREVEDEMKNKYPYL 48888 + V WQ E T E+ ++K ++P L Sbjct: 1346 GLLEALVHWQGLPVHEDTWEIAKDLKKQFPGL 1377 Score = 58.9 bits (140), Expect(3) = 2e-020 Identities = 31/100 (31%), Positives = 50/100 (50%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 M D I + SP+ + VL ++KK R C+DY N T K+P+ I Sbjct: 551 MLDNGIIRASKSPFSSPVLLVKKKDQSWRFCVDYRALNRATIPNKFPIPMIDQLLDELHG 610 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 ++LR+G H+++++ D+ KT F GH+ FLV+ Sbjct: 611 AIIFSKLDLRAGYHQIRMKVEDIEKTTFRTHDGHFEFLVM 650 Score = 53.9 bits (127), Expect = 2e-004 Identities = 30/81 (37%), Positives = 47/81 (57%) Frame = +3 Query: 42468 VQDSLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKISSKTIHRGRILK*DGPF 42647 +++ L A + MKNN D+H +EF N V +KL P+ + +K + + K GPF Sbjct: 1219 IKEHLVNAQQLMKNNDDKHRREVEFDTRNRVFLKLRPYRQNSV-TKRVCQKLAAKYFGPF 1277 Query: 42648 DVIERAGEVSCMLKLSEILKI 42710 +++ER G+V+ LKL E KI Sbjct: 1278 EIMERIGKVAYRLKLPEGSKI 1298 Score = 52.7 bits (124), Expect(3) = 2e-020 Identities = 43/151 (28%), Positives = 66/151 (43%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M+ + +PFL F YS N+++H L +VL+ L + K Sbjct: 657 APATFQSSMNDMLRPFLRKFVLVFFDDILIYSRNEQEHEEHLAMVLKVLEEHQFYANRKK 716 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 Y HI +G+ D K + + P K + FL L YYRRF+ + Sbjct: 717 -----PY-----HIT--QGVSTDPTKTVAMTKWVTPQSVKELRGFLGLTGYYRRFLKGYG 764 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 +++ PLT++ K F SE + F L + Sbjct: 765 TLARPLTELL-KKDSFVWSESAQEAFDALKR 794 Score = 50.4 bits (118), Expect(3) = 4e-036 Identities = 24/62 (38%), Positives = 38/62 (60%) Frame = +1 Query: 11086 KLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPSLIVPTKIVGIK 11265 KL ++ G ++I +R+G Y L+LP E + +H+VFH+S L + LGD ++P V Sbjct: 1268 KLAAKYFGPFEIMERIGKVAYRLKLP-EGSKIHLVFHVSQLKQVLGDHHQVIPLPEVLTA 1326 Query: 11266 DN 11271 DN Sbjct: 1327 DN 1328 Score = 36.0 bits (81), Expect(3) = 2e-020 Identities = 21/53 (39%), Positives = 30/53 (55%) Frame = +3 Query: 9591 GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL 9749 GKV SK E+ P ++ EL ++V S++ W H+L G R + TD KSL Sbjct: 808 GKVHGLTSK-----EQLKPVYERELMAIVLSIQKWKHYLMGRRFVLHTDQKSL 855 Score = 21.9 bits (45), Expect(3) = 4e-036 Identities = 9/26 (34%), Positives = 16/26 (60%) Frame = +3 Query: 11352 VLWRNQFVEEATYEAEEDMRKRYSHL 11429 V W+ V E T+E +D++K++ L Sbjct: 1352 VHWQGLPVHEDTWEIAKDLKKQFPGL 1377 >emb|CAA80824.1| (Z24451) pol protein [Drosophila ananassae] Length = 1040 Score = 288 bits (730), Expect = 4e-075 Identities = 154/420 (36%), Positives = 245/420 (57%), Gaps = 9/420 (2%) Frame = -2 Query: 51703 TIDVLLDT---QPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 TI +L+T PI+ Y +A E++ Q++++LE+G IR S SP+ +P V KK Sbjct: 155 TIKHVLNTTHNSPIYSKQYPLAQTHENEVENQVQEMLEQGLIRESNSPYNSPTWVVPKKP 214 Query: 51532 GS-----LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVRE 51368 + ++ I+Y++LN++T+ +R+P+P +D++ +L + F+ IDL +H++ + Sbjct: 215 DASGKAKYRVVIDYRKLNEITIPDRFPIPNMDEILGKLGKCQYFTTIDLARGFHQIEMDS 274 Query: 51367 ADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRS 51188 I KTAF T+ GHY++ + FG+ NA A F MN + +P ++ +V++DD++++S S Sbjct: 275 ESIQKTAFSTKRGHYEYVRMPFGLRNAPATFQRCMNNILRPLINKHCLVYLDDMIIFSTS 334 Query: 51187 EEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWT 51008 +EH + L+ V L L KCEF FLGHI+ DGI+ + K+EA+ ++ Sbjct: 335 LDEHLNSLQLVFEKLSESNLKLQLDKCEFLKKEATFLGHIVTPDGIKPNPLKVEAIASYP 394 Query: 51007 RPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTN-ACERSF*LLKDKL 50831 PT E+R+FL + YYR+F+ +A I+ P+ R +K AK N +F LK + Sbjct: 395 IPTKVKEIRAFLGMTGYYRKFIPSYADIAKPMTRYLKKGAKIDINNHEYVEAFEKLKTLI 454 Query: 50830 TIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEI 50651 T P L LP +V+ D S + LG VL Q I++ SR L HE NY T + +L Sbjct: 455 TSEPILQLPNFEKKFVLTTDASNLALGAVLSQDNHPISFISRTLNDHELNYSTIEKELLA 514 Query: 50650 VVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKA 50471 +V A K +RHYL G H I +DH+ L+++ KE + +RW L ++D I Y GK Sbjct: 515 IVWATKTFRHYLLGRHFQIASDHQPLRWLHNLKEPNAKLQRWRIRLAEFDFHIEYIKGKQ 574 Query: 50470 NVVVDALSR 50444 N + DALSR Sbjct: 575 NSIADALSR 583 Score = 78.4 bits (190), Expect(2) = 3e-017 Identities = 38/128 (29%), Positives = 70/128 (54%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M+ + +P ++ +S + ++H + L++V + L ++ K Sbjct: 301 APATFQRCMNNILRPLINKHCLVYLDDMIIFSTSLDEHLNSLQLVFEKLSESNLKLQLDK 360 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF K FLGHI++ +GI+ + K+E+ S+P P K I +FL + YYR+F+ ++ Sbjct: 361 CEFLKKEATFLGHIVTPDGIKPNPLKVEAIASYPIPTKVKEIRAFLGMTGYYRKFIPSYA 420 Query: 9418 SISSPLTK 9441 I+ P+T+ Sbjct: 421 DIAKPMTR 428 Score = 38.7 bits (88), Expect(2) = 3e-017 Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKK-----K*YLRICIDYLQFNNVTTKKKYPLLRIYGXX 8905 M ++ I ++ SP+ + + KK K R+ IDY + N +T ++P+ + Sbjct: 190 MLEQGLIRESNSPYNSPTWVVPKKPDASGKAKYRVVIDYRKLNEITIPDRFPIPNMDEIL 249 Query: 8906 XXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFL 9034 I+L G H++++ + KT F + GHY ++ Sbjct: 250 GKLGKCQYFTTIDLARGFHQIEMDSESIQKTAFSTKRGHYEYV 292 >gb|AAF36671.1|AF222049_2 (AF222049) pol protein [Drosophila melanogaster] Length = 1037 Score = 288 bits (729), Expect = 5e-075 Identities = 152/444 (34%), Positives = 252/444 (56%), Gaps = 6/444 (1%) Frame = -2 Query: 51775 VVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEK 51596 ++ +F +F +I+ I + + PI+ Y+ E+ Q+ ++L++ Sbjct: 100 LIQKFEHIFYKEGQDLSFTSEIKHRI-ITKNDLPIYSKTYKYPEIHKDEVNRQIAEMLDQ 158 Query: 51595 GFIRPSTSPWGAPVLFVRKK-----DGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQ 51431 G IR S SP+ +P+ V+KK ++ ++Y++LNK T+++R+P+P ID++FD+L Sbjct: 159 GIIRHSKSPYNSPLWVVQKKMDQSNKQKWRLVVDYRKLNKETIEDRFPIPNIDEIFDKLG 218 Query: 51430 GAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVF 51251 K FS +DL ++++ + D+ KTAF T GHY+F + FG+ NA + F LMN + Sbjct: 219 DCKIFSTLDLAKGFYQIEMDNKDVHKTAFSTTSGHYEFLRMPFGLRNAPSTFQRLMNNIL 278 Query: 51250 KPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGH 51071 P+ F IV++DDIL++S++ EH +HL + L L KCEF + FLGH Sbjct: 279 SPYTGQFCIVYMDDILIFSKNIGEHVNHLSCIFSCLSKANLKLQSDKCEFAREEIEFLGH 338 Query: 51070 IIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKA 50891 I ++G++ +KI+A+ PT +++SFL + Y RR+++ ++ I+ PLI+ +K Sbjct: 339 TINSEGLKPSQKKIDAICKINLPTNQKQIKSFLGITGYLRRYIKDYSKIAQPLIKYLKKN 398 Query: 50890 AKF-*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAY 50714 +K +F LK +T P + P+ + I D S LG VLMQ KVI+Y Sbjct: 399 SKINTHDQXYVEAFQKLKILITSDPIVVYPDFNKQFTIVTDASNYALGAVLMQDNKVISY 458 Query: 50713 ASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQ 50534 ASR L+ HE NY T + +L + + K +++Y+YG I TDH+ L ++ KE L+ Sbjct: 459 ASRSLKNHELNYSTIEKELLAIYWSTKFFKYYIYGRKFIIKTDHRPLVWLNNLKEPNLKL 518 Query: 50533 RRWLELLKDYDVDILYHLGKANVVVDALSR 50444 +RW L ++D DI + GK N + D LSR Sbjct: 519 QRWKVQLNEFDFDITFIKGKENALADGLSR 548 Score = 68.7 bits (165), Expect(2) = 4e-015 Identities = 38/128 (29%), Positives = 62/128 (47%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ F LM+ + P+ F +S N +H + L + L ++ K Sbjct: 266 APSTFQRLMNNILSPYTGQFCIVYMDDILIFSKNIGEHVNHLSCIFSCLSKANLKLQSDK 325 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF + + FLGH I+ EG++ ++KI++ P K I SFL + Y RR++ +S Sbjct: 326 CEFAREEIEFLGHTINSEGLKPSQKKIDAICKINLPTNQKQIKSFLGITGYLRRYIKDYS 385 Query: 9418 SISSPLTK 9441 I+ PL K Sbjct: 386 KIAQPLIK 393 Score = 43.0 bits (99), Expect(2) = 2e-004 Identities = 23/70 (32%), Positives = 44/70 (62%) Frame = +3 Query: 9561 YSVLSCIL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDN 9740 Y++ + ++ + KVI Y S+ L +E NY T + EL ++ +S K + +++YG + I TD+ Sbjct: 443 YALGAVLMQDNKVISYASRSLKNHELNYSTIEKELLAIYWSTKFFKYYIYGRKFIIKTDH 502 Query: 9741 KSL*YVFTLK 9770 + L ++ LK Sbjct: 503 RPLVWLNNLK 512 Score = 41.0 bits (94), Expect(2) = 4e-015 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKK-----K*YLRICIDYLQFNNVTTKKKYPLLRIYGXX 8905 M D+ I + SP+ + + ++KK K R+ +DY + N T + ++P+ I Sbjct: 155 MLDQGIIRHSKSPYNSPLWVVQKKMDQSNKQKWRLVVDYRKLNKETIEDRFPIPNIDEIF 214 Query: 8906 XXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFL 9034 ++L G +++++ DV KT F GHY FL Sbjct: 215 DKLGDCKIFSTLDLAKGFYQIEMDNKDVHKTAFSTTSGHYEFL 257 Score = 30.1 bits (66), Expect(2) = 2e-004 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = +2 Query: 9746 PLICIH-FKIANLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEEL 9922 PL+ ++ K NLK +RW ++D I + GK N + L R+ T + + Sbjct: 504 PLVWLNNLKEPNLKLQRWKVQLNEFDFDITFIKGKENALADGLSRIVKASTEEYDKNAQT 563 Query: 9923 AKDVHRL 9943 +++ L Sbjct: 564 NIEINNL 570 >gb|AAD39272.1|AC007203_4 (AC007203) Similar to retrotransposon polyprotein [Arabidopsis thaliana] Length = 1264 Score = 281 bits (711), Expect = 7e-073 Identities = 162/445 (36%), Positives = 233/445 (51%) Frame = -2 Query: 51778 LVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLE 51599 +V+ EFP +F +E +I + I + YR A L++ + +L Sbjct: 351 VVLSEFPTIFDIHIELPPFRG-LEHSISLKPGVSSIIVRSYRYPHATNVVLEKMVEVMLV 409 Query: 51598 KGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKC 51419 G IRP+T P +++P+P I+ L D+L GA Sbjct: 410 TGIIRPTTIP------------------------------DKFPIPVIELLLDELHGAMI 439 Query: 51418 FSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFL 51239 FSKIDL S YH++R++ DI KTAF T GHY+F V+SFG+TNA A F MNR+ K L Sbjct: 440 FSKIDLCSGYHQIRMKPEDIEKTAFHTLEGHYEFLVMSFGLTNAPATFQSSMNRISKKLL 499 Query: 51238 DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGA 51059 FV+VF D IL+YS S E H HLR VL++L KLY KC F + + +LGHII A Sbjct: 500 RKFVLVFFDHILIYSPSVESHVKHLREVLQLLADNKLYENMKKCSFGVQQVEYLGHIISA 559 Query: 51058 DGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF* 50879 +G+ D+ K EA+ W P+ ++R FL L YY +FV + I+ L L K KF Sbjct: 560 EGVVTDSTKTEAMHNWQVPSNLKQLRGFLGLTGYYIKFVRGYGSIAKTLTELL-KRDKFL 618 Query: 50878 WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQL 50699 W + +F +K + +AP L P+ + + D G G+G VLMQ + I Y S L Sbjct: 619 WLTMTQDAFEQVKQAMILAPVLGFPDFDKVFFLETDVFGTGVGAVLMQEKRRITYFSHDL 678 Query: 50698 RKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLE 50519 E ++ +L +V + W+HYL G ++TD +SL+++ +QKE+ + +RWL Sbjct: 679 TPREQLKSAYERELMAIVMDVLKWKHYLIGRKFKVHTDQRSLKFLLEQKEVNMEYQRWLT 738 Query: 50518 LLKDYDVDILYHLGKANVVVDALSR 50444 L D+DI+Y G AN D LSR Sbjct: 739 RLLGCDMDIVYKPGVANKAADGLSR 763 Score = 123 bits (306), Expect(2) = 2e-040 Identities = 65/169 (38%), Positives = 103/169 (60%) Frame = -3 Query: 49932 WEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHG 49753 WE I++DFI GLP T + I V++DRL+K+ +FL ++ + A D +V E+V+L+G Sbjct: 847 WEDISVDFIEGLP-TSGGVNVILVVVDRLSKAVYFLGLKHLFKAIDVANKFVSEVVKLYG 905 Query: 49752 VPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIID 49573 P SI+SDR F W+ K GTQ+ ST++ PQTDG++E + LE LR Sbjct: 906 FPKSIVSDRDRIFLGAVWKDMFKLSGTQLKHSTSYRPQTDGQTEVLNRCLETYLRCFTSS 965 Query: 49572 FKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVGET 49426 +W +L +EF++N YHS+++ +P++ +YGR S + F++G T Sbjct: 966 HPRAWHKYLAWVEFSFNTAYHSALKTSPFKVVYGRDPPSLVR-FELGST 1013 Score = 104 bits (257), Expect(2) = 3e-026 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 2/224 (0%) Frame = +2 Query: 10388 WEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHG 10567 WE I++DFI+ S N I V+VDRL+K+ +FL + A D A ++ +V +L+G Sbjct: 847 WEDISVDFIEGLPTSGGV-NVILVVVDRLSKAVYFLGLKHLFKAIDVANKFVSEVVKLYG 905 Query: 10568 FLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILK-EVEKQCTIKTLEYMLRACVID 10744 F I+S+R F +WK K G++L + + + + + + LE LR Sbjct: 906 FPKSIVSDRDRIFLGAVWKDMFKLSGTQLKHSTSYRPQTDGQTEVLNRCLETYLRCFTSS 965 Query: 10745 FKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGRRGRYHIRLFKVGESGLIGLDVVHQI 10924 W + +E+S+N +YHS+++ +P++ +YGR +R F++G + L+V + Sbjct: 966 HPRAWHKYLAWVEFSFNTAYHSALKTSPFKVVYGRDPPSLVR-FELGSTDNWDLEVQLKE 1024 Query: 10925 MD-KLKVIQERMMTTQSCKKFNTDIRRRPLECEVDDWVYLKV*P*R 11059 D L+ I+ + Q K N D++RR + V DWV+LK+ P R Sbjct: 1025 RDLMLEHIRANLQRAQEIMKRNADMKRRDVVFAVGDWVHLKLQPYR 1070 Score = 73.0 bits (176), Expect(2) = 3e-014 Identities = 46/129 (35%), Positives = 64/129 (48%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M+R+ K L F YS + E H LR VLQ L + + K Sbjct: 483 APATFQSSMNRISKKLLRKFVLVFFDHILIYSPSVESHVKHLREVLQLLADNKLYENMKK 542 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F ++ V +LGHIIS EG+ D K E+ ++ P K + FL L YY +FV + Sbjct: 543 CSFGVQQVEYLGHIISAEGVVTDSTKTEAMHNWQVPSNLKQLRGFLGLTGYYIKFVRGYG 602 Query: 9418 SISSPLTKI 9444 SI+ LT++ Sbjct: 603 SIAKTLTEL 611 Score = 71.0 bits (171), Expect(2) = 2e-040 Identities = 40/104 (38%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKG-KLSPRYIGPYQIVRWIGKVAYEL 49164 + +AD +R D+ F +GDWV LK+ P + + R KL+ ++ GP++IV IG VAY + Sbjct: 1044 KRNADMKRRDVVFAVGDWVHLKLQPYRQRTVVRRPCYKLAAKFFGPFEIVERIGNVAYRI 1103 Query: 49163 DLPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIE-EFSYEEK 49029 +LP+ + +H VF+VS L+K G+ V + +++E EF + EK Sbjct: 1104 NLPASSK-IHNVFNVSQLKKVFGEQQVVQATNPPKLVEDEFLFPEK 1148 Score = 46.9 bits (109), Expect = 0.027 Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 1/150 (0%) Frame = +3 Query: 42468 VQDSLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKISSKTIHRGRILK*DGPF 42647 ++ +L++A + MK NAD + F VG+ V +KL P+ + + + ++ K GPF Sbjct: 1032 IRANLQRAQEIMKRNADMKRRDVVFAVGDWVHLKLQPYRQRTVVRRPCYK-LAAKFFGPF 1090 Query: 42648 DVIERAGEVSCMLKLSEILKI-SPYISCEFS*TFS*GC*GSKNISCQECSLVVQTQFEEQ 42824 +++ER G V+ + L KI + + + F + + +V+ +F Sbjct: 1091 EIVERIGNVAYRINLPASSKIHNVFNVSQLKKVFG----EQQVVQATNPPKLVEDEFLFP 1146 Query: 42825 IEKILDQRNLGQTKKNFLVQ*KGKSVSDAAW 42917 EKI+D + K FLV+ + + VS+ +W Sbjct: 1147 -EKIVDISFTDKGNKEFLVKWQDRGVSENSW 1176 Score = 43.0 bits (99), Expect(2) = 3e-026 Identities = 19/54 (35%), Positives = 32/54 (59%) Frame = +1 Query: 11086 KLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPSLIVPT 11247 KL +F G ++I +R+GN Y + LP + +H VF++S L K G+ ++ T Sbjct: 1081 KLAAKFFGPFEIVERIGNVAYRINLPAS-SKIHNVFNVSQLKKVFGEQQVVQAT 1133 Score = 34.0 bits (76), Expect(2) = 3e-014 Identities = 21/65 (32%), Positives = 31/65 (47%) Frame = +2 Query: 8861 TTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 T K+P+ I I+L SG H+++++ D+ KT F GHY FLV+ Sbjct: 417 TIPDKFPIPVIELLLDELHGAMIFSKIDLCSGYHQIRMKPEDIEKTAFHTLEGHYEFLVM 476 Query: 9041 FIVLT 9055 LT Sbjct: 477 SFGLT 481 >emb|CAA08807.1| (AJ009736) Pol protein [Drosophila melanogaster] Length = 1150 Score = 280 bits (709), Expect = 1e-072 Identities = 154/420 (36%), Positives = 249/420 (58%), Gaps = 11/420 (2%) Frame = -2 Query: 51703 TIDVLLDTQ---PIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKK- 51536 TI ++ TQ P++ PY+ + +E+ +Q+++++E+G +R S SP+ +P+ V KK Sbjct: 268 TIKHVIQTQHEDPVYRKPYKYPQSVDQEVNKQIKEMIEQGIVRKSKSPYCSPIWVVPKKA 327 Query: 51535 DGS----LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVRE 51368 D S ++ ++Y+ LN++TV +++P+PR+D++ D+L + F+ IDL +H++++ E Sbjct: 328 DASGKQKFRLVVDYRNLNEITVNDKFPIPRMDEILDKLGRCQYFTTIDLAKGFHQIQMDE 387 Query: 51367 ADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRS 51188 I KTAF T++GHY++ + FG+ NA A F MN + + + +V++DDI+VYS Sbjct: 388 NSIAKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLIYKDCLVYLDDIIVYSTP 447 Query: 51187 EEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWT 51008 EEH L+ V L+ L KCEF FLGHI+ +GI+ + K +A+ + Sbjct: 448 LEEHILSLKKVFEKLRDANLKLQLDKCEFMKKETEFLGHIVTTNGIKPNPNKTKAITNFP 507 Query: 51007 RPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACE---RSF*LLKD 50837 P TP +++SFL L +YR+F+ FA I P+ +K A C+ SF LK Sbjct: 508 LPKTPKQIKSFLGLCGFYRKFIPNFAKIVKPMTLKLKKGAII--DTKCKEYIESFEKLKV 565 Query: 50836 KLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKL 50657 +T P L P+ + + D S V +G VL Q+ K + YASR L +HE NY T + +L Sbjct: 566 LITSDPILIYPDFSKPFSLTTDASNVAIGAVLSQNHKPVCYASRTLNEHEINYATIEKEL 625 Query: 50656 EIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLG 50477 +V A K +R YL+G ++ +DHK L ++ KE ++ +RW L ++D I Y G Sbjct: 626 LAIVWATKYFRSYLFGRPFEVLSDHKPLVWLNNIKEPNMKLQRWKIKLNEFDYKIKYLPG 685 Query: 50476 KANVVVDALSR 50444 K N V DALSR Sbjct: 686 KENHVADALSR 696 Score = 73.0 bits (176), Expect(2) = 2e-017 Identities = 42/127 (33%), Positives = 64/127 (50%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M+ + + + YS E+H L+ V + LR+ ++ K Sbjct: 414 APATFQRCMNNLLEDLIYKDCLVYLDDIIVYSTPLEEHILSLKKVFEKLRDANLKLQLDK 473 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF K FLGHI++ GI+ + K ++ +FP P PK I SFL L +YR+F+ F+ Sbjct: 474 CEFMKKETEFLGHIVTTNGIKPNPNKTKAITNFPLPKTPKQIKSFLGLCGFYRKFIPNFA 533 Query: 9418 SISSPLT 9438 I P+T Sbjct: 534 KIVKPMT 540 Score = 44.9 bits (104), Expect(2) = 2e-017 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKK-----K*YLRICIDYLQFNNVTTKKKYPLLRIYGXX 8905 M ++ + ++ SP+ + + + KK K R+ +DY N +T K+P+ R+ Sbjct: 303 MIEQGIVRKSKSPYCSPIWVVPKKADASGKQKFRLVVDYRNLNEITVNDKFPIPRMDEIL 362 Query: 8906 XXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHY 9025 I+L G H++++ E + KT F ++GHY Sbjct: 363 DKLGRCQYFTTIDLAKGFHQIQMDENSIAKTAFSTKHGHY 402 >gb|AAF48838.2| (AE003508) CG15054 gene product [Drosophila melanogaster] Length = 681 Score = 278 bits (704), Expect = 5e-072 Identities = 153/466 (32%), Positives = 262/466 (55%), Gaps = 7/466 (1%) Frame = -2 Query: 51775 VVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEK 51596 ++ +F +F +I+ I + + PI+ Y+ E+ Q+ ++L++ Sbjct: 24 LIQKFEHIFYKEGQDLSFTSEIKHRI-ITKNDLPIYSKTYKYPEIHKDEVNRQIAEMLDQ 82 Query: 51595 GFIRPSTSPWGAPVLFVRKK-----DGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQ 51431 G IR S SP+ +P+ V+KK ++ ++Y++LNK T+++R+P+P ID++FD+L Sbjct: 83 GIIRHSKSPYNSPLWVVQKKMDQSNKQKWRLVVDYRKLNKETIEDRFPIPNIDEIFDKLG 142 Query: 51430 GAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVF 51251 K FS +DL ++++ + D+ KTAF T GHY+F + FG+ NA + F LMN + Sbjct: 143 DCKIFSTLDLAKGFYQIEMDNKDVHKTAFSTTSGHYEFLRMPFGLRNAPSTFQRLMNNIL 202 Query: 51250 KPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGH 51071 P+ F IV++DDIL++S++ EH +HL + L L KCEF + FLGH Sbjct: 203 SPYTGQFCIVYMDDILIFSKNIGEHVNHLSCIFSCLSKANLKLQSDKCEFAREEIEFLGH 262 Query: 51070 IIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKA 50891 I ++G++ +KI+A+ PT +++SFL + Y RR+++ ++ I+ PLI+ +K Sbjct: 263 TINSEGLKPSQKKIDAICKINLPTNQKQIKSFLGITGYLRRYIKDYSKIAQPLIKYLKKN 322 Query: 50890 AKF*WTNACE--RSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIA 50717 +K T+ E +F LK +T P + P+ + I D S LG VLMQ KVI+ Sbjct: 323 SKI-NTHDQEYVEAFQKLKILITSDPIVVYPDFNKQFTIVTDASNYALGAVLMQDNKVIS 381 Query: 50716 YASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLR 50537 YASR L+ HE NY T + +L + + K +++Y+YG I TDH+ L ++ KE L+ Sbjct: 382 YASRSLKNHELNYSTIEKELLAIYWSTKFFKYYIYGRKFIIKTDHRPLVWLNNLKEPNLK 441 Query: 50536 QRRWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMREMVRDIQR 50378 +RW L ++D DI + N +D ++ +L +V P+ + + D + Sbjct: 442 LQRWKVQLNEFDFDITFIKEINN--LDIFMLENTNTLPEVTPKTKIINEDFSK 492 Score = 68.7 bits (165), Expect(2) = 4e-015 Identities = 38/128 (29%), Positives = 62/128 (47%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ F LM+ + P+ F +S N +H + L + L ++ K Sbjct: 190 APSTFQRLMNNILSPYTGQFCIVYMDDILIFSKNIGEHVNHLSCIFSCLSKANLKLQSDK 249 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF + + FLGH I+ EG++ ++KI++ P K I SFL + Y RR++ +S Sbjct: 250 CEFAREEIEFLGHTINSEGLKPSQKKIDAICKINLPTNQKQIKSFLGITGYLRRYIKDYS 309 Query: 9418 SISSPLTK 9441 I+ PL K Sbjct: 310 KIAQPLIK 317 Score = 43.0 bits (99), Expect = 0.41 Identities = 23/70 (32%), Positives = 44/70 (62%) Frame = +3 Query: 9561 YSVLSCIL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDN 9740 Y++ + ++ + KVI Y S+ L +E NY T + EL ++ +S K + +++YG + I TD+ Sbjct: 367 YALGAVLMQDNKVISYASRSLKNHELNYSTIEKELLAIYWSTKFFKYYIYGRKFIIKTDH 426 Query: 9741 KSL*YVFTLK 9770 + L ++ LK Sbjct: 427 RPLVWLNNLK 436 Score = 41.0 bits (94), Expect(2) = 4e-015 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKK-----K*YLRICIDYLQFNNVTTKKKYPLLRIYGXX 8905 M D+ I + SP+ + + ++KK K R+ +DY + N T + ++P+ I Sbjct: 79 MLDQGIIRHSKSPYNSPLWVVQKKMDQSNKQKWRLVVDYRKLNKETIEDRFPIPNIDEIF 138 Query: 8906 XXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFL 9034 ++L G +++++ DV KT F GHY FL Sbjct: 139 DKLGDCKIFSTLDLAKGFYQIEMDNKDVHKTAFSTTSGHYEFL 181 >gb|AAA92249.1| (M32662) ORF B (bases 1850-5560) first start codon at 2306 [Autographa californica nucleopolyhedrovirus] Length = 1084 Score = 277 bits (700), Expect = 1e-071 Identities = 172/528 (32%), Positives = 286/528 (53%), Gaps = 16/528 (3%) Frame = -2 Query: 51763 FPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIR 51584 + DVF KI+ I D P++ YR +E+++Q+ +L++G IR Sbjct: 110 YSDVFYIDGEALTFTNKIKHRIRTT-DEVPVYTKSYRYPFIHRQEVRDQITKMLDQGIIR 168 Query: 51583 PSTSPWGAPVLFVRKK-DGS----LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKC 51419 PS S W +P+ V KK D S ++ +++++LN+ T+ ++YP+P I D+ D+L + Sbjct: 169 PSDSAWSSPIWVVPKKIDASGKQKWRLVVDFRKLNEKTIDDKYPIPNISDVLDKLGKCQY 228 Query: 51418 FSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFL 51239 F+ +DL S +++V + DI KTAF +GH++F + G+ N+ + F +M+ V + Sbjct: 229 FTTLDLASGFYQVEMDPQDISKTAFNVEHGHFEFLRMPMGLKNSPSTFQRVMDNVLRGLQ 288 Query: 51238 DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGA 51059 + +V++DDI+VYS S +EH ++L V + L+ K EF A+LGHII Sbjct: 289 NNICLVYLDDIIVYSTSLQEHLENLERVFQRLRESNFKIQMDKSEFLKLETAYLGHIISR 348 Query: 51058 DGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF* 50879 DGI+ + KI A++ + P TP E++ FL L YYR+F+ FA ++ PL + +K +K Sbjct: 349 DGIKPNPDKISAIQKYLIPKTPKEIKQFLGLLGYYRKFIPDFARLTKPLTQCLKKGSKVT 408 Query: 50878 WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQ----HGKVIAYA 50711 + +F K LT P L P+ + + D S +G VL Q K + YA Sbjct: 409 LSPEYVNAFEHCKTLLTNDPILQYPDFTREFNLTTDASNFAIGAVLSQGPIGSDKPVCYA 468 Query: 50710 SRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQR 50531 SR L + E NY T + +L +V A K +R YL+G I TDHK LQ++ K+ R Sbjct: 469 SRTLNESELNYSTIEKELLAIVWATKYFRPYLFGRKFKILTDHKPLQWMMNLKDPNSRMT 528 Query: 50530 RWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMREMVRDIQRLSSLGVCLA 50351 RW L +YD ++Y GK+N DALSR + + T++ E+ ++ +I+ LSS+ + Sbjct: 529 RWRLRLSEYDFSVVYKKGKSNTNADALSRVEIHT-TEID-EIDSVIENIKELSSM---IN 583 Query: 50350 NSEDSGVSI*EVAKSSIIDEVKRHQYKDPILAQYRDAALQKENT-------HLRIHLTEC 50192 N ++ ++ DE++++ D + L+ T H +IHLT Sbjct: 584 NPSETSR---PQRQTENTDEIRQNSTTDTVHTSDEHPILEVPITNEPLNRFHRQIHLTVV 640 Query: 50191 YNMK 50180 ++K Sbjct: 641 GDIK 644 Score = 70.6 bits (170), Expect(2) = 4e-016 Identities = 40/128 (31%), Positives = 64/128 (49%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 +P+ F +M V + + YS + ++H +L V Q LR ++ K Sbjct: 272 SPSTFQRVMDNVLRGLQNNICLVYLDDIIVYSTSLQEHLENLERVFQRLRESNFKIQMDK 331 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF +LGHIIS +GI+ + +KI + + P PK I FL L YYR+F+ F+ Sbjct: 332 SEFLKLETAYLGHIISRDGIKPNPDKISAIQKYLIPKTPKEIKQFLGLLGYYRKFIPDFA 391 Query: 9418 SISSPLTK 9441 ++ PLT+ Sbjct: 392 RLTKPLTQ 399 Score = 53.5 bits (126), Expect = 3e-004 Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 7/251 (2%) Frame = -3 Query: 50097 GSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMIN 49918 G + Y L Y+W MK I +F+ +C+ C K + + T E ++ Sbjct: 746 GINECYLALSKRYYWPRMKDQITKFINECTICGQAKYDRNPIRPQFNIVPPATKPLETVH 805 Query: 49917 MDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSI 49738 MD T + + ID TK +R +A ++ +R HG+P +I Sbjct: 806 MDLFTV------QNEKYITFIDVFTKYGQAYHLRDG-TAISILQALLRFCTH-HGLPITI 857 Query: 49737 ISDRGAQFTTNFWRSFQKGLGTQVNLSTTFH-PQTDGKSERTIQTLEDMLRASIIDFKGS 49561 ++D G +F+ + F + + ++ T H P +G ER T+ + +R + K Sbjct: 858 VTDNGTEFSNQLFSEFVR-IHKIIHHKTLPHSPSDNGNIERFHSTILEHIRILKLQHKDE 916 Query: 49560 WDDHL-PLIEFAYNNHYHSSIQMAPYEALYGR-KCRSPIGWFDVGETKLI----GPDMIQ 49399 +L P YN+ HS + P++ L G R P+ D+ T+ I + Q Sbjct: 917 PIVNLMPYAIIGYNSSIHSFTKCRPFDLLNGHFDPRDPL---DIDLTEHILQQYAQNHRQ 973 Query: 49398 QVVDKVKLIQERLLASQS 49345 Q+ ++I E LA+++ Sbjct: 974 QMKQVYEIINETSLANRT 991 Score = 42.6 bits (98), Expect(2) = 4e-016 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKK-----K*YLRICIDYLQFNNVTTKKKYPLLRIYGXX 8905 M D+ I + S W + + + KK K R+ +D+ + N T KYP+ I Sbjct: 161 MLDQGIIRPSDSAWSSPIWVVPKKIDASGKQKWRLVVDFRKLNEKTIDDKYPIPNISDVL 220 Query: 8906 XXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFL 9034 ++L SG +++++ D+ KT F +GH+ FL Sbjct: 221 DKLGKCQYFTTLDLASGFYQVEMDPQDISKTAFNVEHGHFEFL 263 Score = 37.1 bits (84), Expect(2) = 0.001 Identities = 21/59 (35%), Positives = 35/59 (58%) Frame = +3 Query: 9594 KVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL*YVFTLK 9770 K + Y S+ L E NY T + EL ++V++ K + +L+G + I TD+K L ++ LK Sbjct: 463 KPVCYASRTLNESELNYSTIEKELLAIVWATKYFRPYLFGRKFKILTDHKPLQWMMNLK 521 Score = 33.2 bits (74), Expect(2) = 0.001 Identities = 19/74 (25%), Positives = 35/74 (46%) Frame = +2 Query: 9758 IHFKIANLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVH 9937 ++ K N + RW +YD S++Y GK+N +L R+ + T I +E+ + Sbjct: 518 MNLKDPNSRMTRWRLRLSEYDFSVVYKKGKSNTNADALSRVEIHTTEI----DEIDSVIE 573 Query: 9938 RLVRLGVRIMDSTE 9979 + L I + +E Sbjct: 574 NIKELSSMINNPSE 587 >emb|CAB57796.1| (X03431) ORF2 [Drosophila melanogaster] Length = 1059 Score = 273 bits (692), Expect = 1e-070 Identities = 154/420 (36%), Positives = 241/420 (56%), Gaps = 10/420 (2%) Frame = -2 Query: 51703 TIDVLLDT---QPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 TI +L+T PI+ Y +A E++ Q++++L +G IR S SP+ +P V KK Sbjct: 194 TIKHVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKP 253 Query: 51532 GS-----LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVRE 51368 + ++ I+Y++LN++T+ +RYP+P +D++ +L + F+ IDL +H++ + E Sbjct: 254 DASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDE 313 Query: 51367 ADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRS 51188 I KTAF T+ GHY++ + FG+ NA A F MN + +P L+ +V++DDI+++S S Sbjct: 314 ESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTS 373 Query: 51187 EEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWT 51008 EH + ++ V L L KCEF FLGHI+ DGI+ + K++A+ ++ Sbjct: 374 LTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYP 433 Query: 51007 RPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACE--RSF*LLKDK 50834 PT E+R+FL L YYR+F+ +A I+ P+ +K K T E +F LK Sbjct: 434 IPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKI-DTQKLEYIEAFEKLKAL 492 Query: 50833 LTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLE 50654 + P L LP+ +V+ D S + LG VL Q+G I++ SR L HE NY + +L Sbjct: 493 IIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELL 552 Query: 50653 IVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGK 50474 +V A K +RHYL G I +DH+ L+++ KE + RW L +Y I Y GK Sbjct: 553 AIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGK 612 Query: 50473 ANVVVDALSR 50444 N V DALSR Sbjct: 613 ENSVADALSR 622 Score = 74.1 bits (179), Expect(2) = 1e-016 Identities = 38/127 (29%), Positives = 68/127 (52%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M+ + +P L+ +S + +H + +++V L + ++ K Sbjct: 340 APATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDK 399 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF K FLGHI++ +GI+ + K+++ S+P P K I +FL L YYR+F+ ++ Sbjct: 400 CEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYA 459 Query: 9418 SISSPLT 9438 I+ P+T Sbjct: 460 DIAKPMT 466 Score = 41.0 bits (94), Expect(2) = 1e-016 Identities = 20/70 (28%), Positives = 34/70 (48%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+ IDY + N +T +YP+ + I+L G H++++ E + KT F Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321 Query: 9005 IKRYGHYLFL 9034 + GHY +L Sbjct: 322 STKSGHYEYL 331 >dbj|BAA92704.1| (AB036886) reverse transcriptase [Tricholoma bakamatsutake] Length = 434 Score = 273 bits (690), Expect = 2e-070 Identities = 162/410 (39%), Positives = 233/410 (56%), Gaps = 12/410 (2%) Frame = -2 Query: 51670 FIPPY-RMAPAELKELKEQ---LRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYK 51503 F+P ++ P LKE +E L + L KG+IRPS SP +PV FV KKD +M +Y+ Sbjct: 13 FVPKKSKVYPLSLKEQEEVDAFLNEQLRKGYIRPSKSPQTSPVFFVPKKDHRKRMCTDYR 72 Query: 51502 QLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHY 51323 LN TVKN +PLP I ++ D++ AK F+K+DL Y VR+++ D K AF R G + Sbjct: 73 YLNNWTVKNAHPLPLISEIIDKVGKAKVFTKLDLCWGYDNVRIKKGDGWKAAFAMRRGSF 132 Query: 51322 DFRVLSFGMTNALAVFMDLMNRVFKPFLDM-FVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 + V+ FGMTN+ F ++MN +FK +D VI+F+DDIL++ EE H ++ VL+ Sbjct: 133 ELLVMFFGMTNSPPTFQNMMNDIFKDVIDKGVVIIFIDDILIFMEDEENHEAIVQEVLKR 192 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 L L+ KC F + + FLG IG DGI++D K++A+ W PT TEV++FL L Sbjct: 193 LAENDLFIKPEKCVFGASEIEFLGLKIGPDGIKMDPIKVQAIFDWPVPTRITEVQAFLGL 252 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 A +YR FV F+ I+ PL L QK + W + +F LK K P L + Sbjct: 253 ANFYRCFVHNFSKIAVPLHNLMQKGVVWRWGEQQQTAFEELKRKFVEEPILVPVDFTRPL 312 Query: 50785 VIYCDTSGVGLGCVLM-----QHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRH 50621 + D S G VL AY S+ L E NY HD ++ ++ AL+ WRH Sbjct: 313 QVESDASDFATGAVLSMLCEDDKWHPCAYLSKGLNDVERNYDVHDKEMLGIIRALEAWRH 372 Query: 50620 YLYG--FHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALS 50447 YL G ++I+TDH++LQY K+L RQ RW L +++ ++ G DALS Sbjct: 373 YLEGCTHQIEIWTDHQNLQYFMSAKKLNHRQARWALFLLRFNLHSVHKAGSLMRKADALS 432 Query: 50446 RK 50441 R+ Sbjct: 433 RR 434 Score = 59.3 bits (141), Expect(2) = 2e-013 Identities = 42/152 (27%), Positives = 75/152 (48%), Gaps = 1/152 (0%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDL-FXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFS 9234 +P F +M+ +FK +D + ++E+H + ++ VL+ L + +K Sbjct: 144 SPPTFQNMMNDIFKDVIDKGVVIIFIDDILIFMEDEENHEAIVQEVLKRLAENDLFIKPE 203 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K F + FLG I +GI++D K+++ +P P + +FL LA +YR FV F Sbjct: 204 KCVFGASEIEFLGLKIGPDGIKMDPIKVQAIFDWPVPTRITEVQAFLGLANFYRCFVHNF 263 Query: 9415 SSISSPLTKIT*TKVQFQ*SEGCE*RFRELNKR 9513 S I+ PL + V ++ E + F EL ++ Sbjct: 264 SKIAVPLHNLMQKGVVWRWGEQQQTAFEELKRK 296 Score = 44.5 bits (103), Expect(2) = 2e-013 Identities = 30/102 (29%), Positives = 46/102 (44%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 K +I + SP + V F+ KK R+C DY NN T K +PL I Sbjct: 41 KGYIRPSKSPQTSPVFFVPKKDHRKRMCTDYRYLNNWTVKNAHPLPLISEIIDKVGKAKV 100 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 ++L G +++++ D K F R G + LV+F +T Sbjct: 101 FTKLDLCWGYDNVRIKKGDGWKAAFAMRRGSFELLVMFFGMT 142 Score = 42.6 bits (98), Expect = 0.54 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Frame = +3 Query: 9606 YDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL*YVFTLK 9770 Y SK L E+NY HD E+ ++ +L+ W H+L G +++I+TD+++L Y + K Sbjct: 341 YLSKGLNDVERNYDVHDKEMLGIIRALEAWRHYLEGCTHQIEIWTDHQNLQYFMSAK 397 >gb|AAC28743.1| (U60529) pol-like protein [Ceratitis capitata] Length = 1060 Score = 270 bits (684), Expect = 1e-069 Identities = 158/468 (33%), Positives = 260/468 (54%), Gaps = 22/468 (4%) Frame = -2 Query: 51817 HDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAE 51638 H +++A L+++ + +P +F ++ TI D P++ Y + Sbjct: 151 HLTDSQAEKLRNLCQL--YPKLFLEPDEKLTYTTVVKATIRTTTDN-PVYSRCYPYPMSL 207 Query: 51637 LKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSL-----QMSIEYKQLNKVTVKNR 51473 E++ Q+ LLE G IRPS SP+ +PV V KK SL ++ I+Y++LN VT+ +R Sbjct: 208 KSEVERQINKLLEDGIIRPSRSPYNSPVWIVDKKPDSLGNKQYRLVIDYRKLNSVTIADR 267 Query: 51472 YPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMT 51293 YP+P I+++ L FS IDL+S +H++ ++ +DI KTAF Y+F L FG+ Sbjct: 268 YPIPEINEVLSHLGSNTFFSVIDLKSGFHQIPLKNSDIEKTAFSINNEKYEFTRLPFGLK 327 Query: 51292 NALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFS 51113 NA ++F ++ + + ++ V++DDI+++SR+E+EH+ HL+ + L+ + Sbjct: 328 NAPSIFQRTLDDILRDYIGQCCYVYIDDIIIFSRNEKEHSTHLKNIFTTLEKANMKVQLD 387 Query: 51112 KCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKF 50933 KC+F+ + FLG I+ +GI+ + KIEA++ + P E+RSFL L+ YYRRFV+ + Sbjct: 388 KCKFFEKEVEFLGFIVTPEGIKTNPSKIEAIQNFPIPRNLKELRSFLGLSGYYRRFVKDY 447 Query: 50932 ALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIA------------PFLNLPEGPDG 50789 A ++ PL L + + R+ L D+ A L P Sbjct: 448 AKLAKPLTALLRGEEGRVSKSQSARAHITLGDEALAALEKIKNVLISRDVMLTYPNLNKD 507 Query: 50788 YVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYG 50609 + + D S +G VL Q + I + SR L K E NY ++ ++ ++ ALK R+YLYG Sbjct: 508 FELTTDASNYAIGAVLSQEDRPITFISRTLTKTEENYAANEKEMLAIIWALKSLRNYLYG 567 Query: 50608 -FHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR---- 50444 V I+TDH+ L Y K + +RW +L++Y+ ++ Y GK NVV D LSR Sbjct: 568 SAKVKIFTDHQPLTYALSNKNNNSKMKRWKAILEEYNYELKYKPGKTNVVADGLSRPPQQ 627 Query: 50443 KSMGSLTDVQ 50414 + SLT Q Sbjct: 628 DQINSLTPTQ 637 Score = 73.7 bits (178), Expect(2) = 1e-016 Identities = 41/129 (31%), Positives = 70/129 (53%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ F + + + ++ +S N+++H++ L+ + TL V+ K Sbjct: 329 APSIFQRTLDDILRDYIGQCCYVYIDDIIIFSRNEKEHSTHLKNIFTTLEKANMKVQLDK 388 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 +F K V FLG I++ EGI+ + KIE+ +FP P K + SFL L+ YYRRFV ++ Sbjct: 389 CKFFEKEVEFLGFIVTPEGIKTNPSKIEAIQNFPIPRNLKELRSFLGLSGYYRRFVKDYA 448 Query: 9418 SISSPLTKI 9444 ++ PLT + Sbjct: 449 KLAKPLTAL 457 Score = 47.6 bits (111), Expect = 0.016 Identities = 40/202 (19%), Positives = 90/202 (43%), Gaps = 2/202 (0%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ* 49882 +++ M I + + QC C K E S +L+ +P + ++++D R Sbjct: 777 FYFPQMNSKINKIIKQCKICLENKYERHPSKLVLKATPVPNYPGHIVHIDIYHTNNRV-- 834 Query: 49881 K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQF-TTN 49705 I +D+ +K A V++ A + ++L +++++ G+P I+ D +++ Sbjct: 835 ----ILTAVDKFSKYAQARIVKSR--ATEDIKLPLQDLLTSFGIPEKIVIDNEKSLNSSS 888 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIID-FKGSWDDHLPLIEFA 49528 + ++ + + +G+ ER TL +++R + + S+++ L Sbjct: 889 IVFMLENQYSIEIFKTPPYTSSVNGQVERFHSTLTEIMRCTKAENTHNSFEELLNRSICK 948 Query: 49527 YNNHYHSSIQMAPYEALYGRKCRS 49456 YN+ HS+ + P E +GR S Sbjct: 949 YNHSIHSTTKKKPIEIFFGRSVYS 972 Score = 41.0 bits (94), Expect(2) = 1e-016 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Frame = +2 Query: 8774 SPWGALVLFLRKKK*YL-----RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXN 8938 SP+ + V + KK L R+ IDY + N+VT +YP+ I Sbjct: 229 SPYNSPVWIVDKKPDSLGNKQYRLVIDYRKLNSVTIADRYPIPEINEVLSHLGSNTFFSV 288 Query: 8939 INLRSGCHKMKVRECDVPKTNF 9004 I+L+SG H++ ++ D+ KT F Sbjct: 289 IDLKSGFHQIPLKNSDIEKTAF 310 Score = 37.1 bits (84), Expect(2) = 5e-004 Identities = 21/70 (30%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Frame = +3 Query: 9561 YSVLSCIL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYG-IRVDIFTD 9737 Y++ + + + I + S+ L E+NY ++ E+ +++++LK ++LYG +V IFTD Sbjct: 517 YAIGAVLSQEDRPITFISRTLTKTEENYAANEKEMLAIIWALKSLRNYLYGSAKVKIFTD 576 Query: 9738 NKSL*YVFTLK 9770 ++ L Y + K Sbjct: 577 HQPLTYALSNK 587 Score = 34.8 bits (78), Expect(2) = 5e-004 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRR 9877 N K +RW + ++Y+ + Y PGK NVV L R Sbjct: 590 NSKMKRWKAILEEYNYELKYKPGKTNVVADGLSR 623 >dbj|BAA92703.1| (AB036885) reverse transcriptase [Tricholoma magnivelare] Length = 393 Score = 270 bits (682), Expect = 2e-069 Identities = 151/385 (39%), Positives = 225/385 (58%), Gaps = 9/385 (2%) Frame = -2 Query: 51595 GFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCF 51416 G IRPS SP +P FV+KKDGSL +Y++LN +TVKN YPLP I +L +QL+GA+ F Sbjct: 1 GRIRPSKSPMASPFFFVKKKDGSLSPVQDYRRLNDITVKNHYPLPLISELVNQLRGAQYF 60 Query: 51415 SKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKP-FL 51239 +K+D+ Y+ VR++E D K AF T G ++ V+ FG+TN+ A F +MN +F L Sbjct: 61 TKLDVHWGYNNVRIKEGDEWKAAFCTNCGLFEPLVMFFGLTNSPATFQTMMNNIFHDLIL 120 Query: 51238 DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGA 51059 + V +++DDIL+++ + +EH R VL L+ KLY KCEF T + +LG II Sbjct: 121 EGVVCIYLDDILIFTCTIKEHRRITRLVLERLRQYKLYLRQDKCEFEKTKIEYLGLIISE 180 Query: 51058 DGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF* 50879 + +D K+ V W PT EV+ FL +Y RF++ F+ + PL LT K A + Sbjct: 181 GQVEMDPVKVNGVTAWPMPTNKKEVQPFLGFINFYWRFIKDFSHHARPLFDLTGKEA-WR 239 Query: 50878 WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHG------KVIA 50717 W NA + +F LK+ +T AP L + + + D+S +G VL Q + Sbjct: 240 WDNAQQGAFEKLKEMVTSAPILTFADDSRPFHVEADSSDFAMGAVLSQQSPEDQKWHPVV 299 Query: 50716 YASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYG--FHVDIYTDHKSLQYIFKQKELY 50543 + S+ L E NY HD ++ ++ AL+ WRH+L G V+I+ DHK+L+Y K+L Sbjct: 300 FYSKSLSAVERNYEIHDKEILAIMGALEEWRHFLEGAQHKVEIWMDHKNLEYFMTAKKLN 359 Query: 50542 LRQRRWLELLKDYDVDILYHLGKANVVVDALSRK 50441 Q RW L +D + +H G++ DALSR+ Sbjct: 360 RHQARWSLYLSRFDFSLHHHPGRSMGKTDALSRR 393 Score = 51.9 bits (122), Expect(2) = 1e-009 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 1/130 (0%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPF-LDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFS 9234 +PA F +M+ +F L+ ++ ++H R+VL+ LR + ++ Sbjct: 103 SPATFQTMMNNIFHDLILEGVVCIYLDDILIFTCTIKEHRRITRLVLERLRQYKLYLRQD 162 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K EF + +LG IIS + +D K+ ++P P K + FL +Y RF+ F Sbjct: 163 KCEFEKTKIEYLGLIISEGQVEMDPVKVNGVTAWPMPTNKKEVQPFLGFINFYWRFIKDF 222 Query: 9415 SSISSPLTKIT 9447 S + PL +T Sbjct: 223 SHHARPLFDLT 233 Score = 43.8 bits (101), Expect(2) = 0.001 Identities = 23/53 (43%), Positives = 35/53 (65%), Gaps = 2/53 (3%) Frame = +3 Query: 9612 SK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL*YVFTLK 9770 SK L E+NY HD E+ +++ +L+ W HFL G +V+I+ D+K+L Y T K Sbjct: 302 SKSLSAVERNYEIHDKEILAIMGALEEWRHFLEGAQHKVEIWMDHKNLEYFMTAK 356 Score = 39.5 bits (90), Expect(2) = 1e-009 Identities = 26/94 (27%), Positives = 42/94 (44%) Frame = +2 Query: 8774 SPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRS 8953 SP + F++KK L DY + N++T K YPL I +++ Sbjct: 8 SPMASPFFFVKKKDGSLSPVQDYRRLNDITVKNHYPLPLISELVNQLRGAQYFTKLDVHW 67 Query: 8954 GCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 G + ++++E D K F G + LV+F LT Sbjct: 68 GYNNVRIKEGDEWKAAFCTNCGLFEPLVMFFGLT 101 Score = 26.6 bits (57), Expect(2) = 0.001 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +2 Query: 9767 KIANLKQRRWLELPKDYDMSILYHPGKANVVTHSLRR 9877 K N Q RW +D S+ +HPG++ T +L R Sbjct: 356 KKLNRHQARWSLYLSRFDFSLHHHPGRSMGKTDALSR 392 >gb|AAG13423.1|AC051634_4 (AC051634) putative plant disease resistance polyprotein; 64427-67186 [Oryza sativa] Length = 894 Score = 266 bits (674), Expect = 2e-068 Identities = 125/286 (43%), Positives = 194/286 (67%) Frame = -2 Query: 51709 EFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDG 51530 + I ++ D P+ PYR +P + E+++Q++++++ G I PS SP+ +PVL V+KKDG Sbjct: 559 DHAIFLVPDATPVNCRPYRYSPLQKDEIEKQVKEMIDAGLITPSMSPYASPVLLVKKKDG 618 Query: 51529 SLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKT 51350 S + ++Y++LN +T+K+++P+P +D+L D+L G K FSK+DL++ YH++R+ E D KT Sbjct: 619 SWRFCVDYRRLNALTIKSKFPMPVVDELLDELSGTKFFSKLDLKAGYHQIRMVETDEAKT 678 Query: 51349 AFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHAD 51170 AF T +G + FRV+ FG+TNA + F LMN VF PF+ FV+VF+D+ILVYS + H Sbjct: 679 AFKTHHGQFQFRVMPFGLTNAPSTFQCLMNSVFAPFIRKFVLVFMDNILVYSPDLDSHLH 738 Query: 51169 HLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPT 50990 HL+ V +L+ +L+A SKC F T L +LG+II G+ D +K A+ W PT+ T Sbjct: 739 HLQQVFVILRQHQLFAKRSKCTFACTQLEYLGYIISDKGVSTDPEKTAAMLAWPVPTSVT 798 Query: 50989 EVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF 50852 E+R FL L YYR+FV+ +++I+ PLI L +K A F WT+ + F Sbjct: 799 ELRGFLGLTGYYRKFVQGYSIIARPLILLLKKKA-FLWTDCHAQKF 843 Score = 74.1 bits (179), Expect(2) = 9e-022 Identities = 44/126 (34%), Positives = 63/126 (49%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ F LM+ VF PF+ F YS + + H L+ V LR + K SK Sbjct: 699 APSTFQCLMNSVFAPFIRKFVLVFMDNILVYSPDLDSHLHHLQQVFVILRQHQLFAKRSK 758 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + +LG+IIS +G+ D EK + ++P P + FL L YYR+FV +S Sbjct: 759 CTFACTQLEYLGYIISDKGVSTDPEKTAAMLAWPVPTSVTELRGFLGLTGYYRKFVQGYS 818 Query: 9418 SISSPL 9435 I+ PL Sbjct: 819 IIARPL 824 Score = 58.2 bits (138), Expect(2) = 9e-022 Identities = 31/105 (29%), Positives = 54/105 (50%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 M D I ++SP+ + VL ++KK R C+DY + N +T K K+P+ + Sbjct: 593 MIDAGLITPSMSPYASPVLLVKKKDGSWRFCVDYRRLNALTIKSKFPMPVVDELLDELSG 652 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 ++L++G H++++ E D KT F +G + F V+ LT Sbjct: 653 TKFFSKLDLKAGYHQIRMVETDEAKTAFKTHHGQFQFRVMPFGLT 697 >gb|AAD27902.1|AC006267_7 (AC006267) putative polyprotein [Arabidopsis thaliana] Length = 1054 Score = 262 bits (662), Expect = 4e-067 Identities = 139/346 (40%), Positives = 205/346 (59%) Frame = -2 Query: 51505 KQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGH 51326 + +N +TVK R+P+PR+DD D+L G+ FSKIDL+S YH+ R++E D KTA T+ Sbjct: 529 RAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQRL 588 Query: 51325 YDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 Y++ V+ FG+TNA FM LMN V + + +FVIV+ DDILVYS++ E H HL+ VL + Sbjct: 589 YEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVLDL 648 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 L+ +KLYA KC F +L FLG ++ ADGI+VD +K++A++ W P Sbjct: 649 LRKEKLYANLKKCTFCTDNLVFLGFVVSADGIKVDEEKVKAIREWPNPK----------- 697 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 +++K F W +A E +F LK+KLT + LP + Sbjct: 698 -------------------NVSEKDIGFKWEDAQENAFQALKEKLTNSSVPILPNFMKSF 738 Query: 50785 VIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGF 50606 I CD SG+G+G VLMQ K IAY S +L NYPT+D +L +V AL+ W+HYL+ Sbjct: 739 EIECDASGLGIGAVLMQDHKPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWPK 798 Query: 50605 HVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKAN 50468 I+TDH+SL+++ Q++L R RW+E ++ + I Y +A+ Sbjct: 799 KFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKREAH 844 Score = 66.7 bits (160), Expect(2) = 8e-013 Identities = 34/96 (35%), Positives = 52/96 (53%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP FM LM+ V + + +F YS N E H L++VL LR ++ K Sbjct: 601 APNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVLDLLRKEKLYANLKK 660 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRP 9345 FC +VFLG ++S +GI+VD+EK+++ +P P Sbjct: 661 CTFCTDNLVFLGFVVSADGIKVDEEKVKAIREWPNP 696 Score = 40.2 bits (92), Expect = 2.7 Identities = 23/52 (44%), Positives = 33/52 (63%) Frame = +3 Query: 9594 KVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL 9749 K I Y S+ L NYPT+D EL +LV +L+ W H+L+ + I TD++SL Sbjct: 758 KPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKKFVIHTDHESL 809 Score = 35.6 bits (80), Expect(2) = 0.64 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGD--WVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYE 49167 + +A+ R ++ F GD WV L+ V R KL PR GP+++++ I AY+ Sbjct: 907 KKYANKGRKEVIFNEGDQVWVHLRKKRFPEV----RSSKLMPRIDGPFKVLKRINNNAYK 962 Query: 49166 LDL 49158 LDL Sbjct: 963 LDL 965 Score = 35.2 bits (79), Expect(2) = 8e-013 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = +2 Query: 8837 DYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRY 9016 D NN+T K ++P+ R+ I+L+SG H+ +++E D KT + Sbjct: 527 DCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQ 586 Query: 9017 GHYLFLVIFIVLT 9055 Y +LV+ LT Sbjct: 587 RLYEWLVMPFGLT 599 Score = 33.6 bits (75), Expect(2) = 6.2 Identities = 13/29 (44%), Positives = 19/29 (64%) Frame = +1 Query: 11074 VNKGKLIPRFIGSYKIYKRVGNQVYELEL 11160 V KL+PR G +K+ KR+ N Y+L+L Sbjct: 937 VRSSKLMPRIDGPFKVLKRINNNAYKLDL 965 Score = 25.4 bits (54), Expect(2) = 0.64 Identities = 15/42 (35%), Positives = 27/42 (63%), Gaps = 6/42 (14%) Frame = -3 Query: 49512 HSSIQMAPYEALYGRKCRSPIGWFDV---GETKLIG---PDMIQQVVD 49387 HS+ + +P+E +YG K SP+ + + L G D++QQV++ Sbjct: 851 HSATKFSPFEIVYGFKPTSPLDLIPLPLSERSSLDGKKKDDLVQQVLN 898 Score = 23.9 bits (50), Expect(2) = 6.2 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Frame = +2 Query: 10805 HSSIQMAPYEALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKF 10984 HS+ + +P+E +YG + + L + S LD + D ++ + T+ KK+ Sbjct: 851 HSATKFSPFEIVYGFKPTSPLDLIPLPLSERSSLDGKKK-DDLVQQVLNLEARTKQYKKY 909 Query: 10985 NTDIRRRPLECEVDD-WVYLK 11044 R+ + E D WV+L+ Sbjct: 910 ANKGRKEVIFNEGDQVWVHLR 930 >emb|CAB81146.1| (AL161510) putative polyprotein [Arabidopsis thaliana] Length = 1054 Score = 262 bits (662), Expect = 4e-067 Identities = 139/346 (40%), Positives = 205/346 (59%) Frame = -2 Query: 51505 KQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGH 51326 + +N +TVK R+P+PR+DD D+L G+ FSKIDL+S YH+ R++E D KTA T+ Sbjct: 529 RAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQRL 588 Query: 51325 YDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 Y++ V+ FG+TNA FM LMN V + + +FVIV+ DDILVYS++ E H HL+ VL + Sbjct: 589 YEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVLDL 648 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 L+ +KLYA KC F +L FLG ++ ADGI+VD +K++A++ W P Sbjct: 649 LRKEKLYANLKKCTFCTDNLVFLGFVVSADGIKVDEEKVKAIREWPNPK----------- 697 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 +++K F W +A E +F LK+KLT + LP + Sbjct: 698 -------------------NVSEKDIGFKWEDAQENAFQALKEKLTNSSVPILPNFMKSF 738 Query: 50785 VIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGF 50606 I CD SG+G+G VLMQ K IAY S +L NYPT+D +L +V AL+ W+HYL+ Sbjct: 739 EIECDASGLGIGAVLMQDHKPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWPK 798 Query: 50605 HVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKAN 50468 I+TDH+SL+++ Q++L R RW+E ++ + I Y +A+ Sbjct: 799 KFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKREAH 844 Score = 66.7 bits (160), Expect(2) = 8e-013 Identities = 34/96 (35%), Positives = 52/96 (53%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP FM LM+ V + + +F YS N E H L++VL LR ++ K Sbjct: 601 APNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVLDLLRKEKLYANLKK 660 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRP 9345 FC +VFLG ++S +GI+VD+EK+++ +P P Sbjct: 661 CTFCTDNLVFLGFVVSADGIKVDEEKVKAIREWPNP 696 Score = 40.2 bits (92), Expect = 2.7 Identities = 23/52 (44%), Positives = 33/52 (63%) Frame = +3 Query: 9594 KVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL 9749 K I Y S+ L NYPT+D EL +LV +L+ W H+L+ + I TD++SL Sbjct: 758 KPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKKFVIHTDHESL 809 Score = 35.6 bits (80), Expect(2) = 0.64 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGD--WVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYE 49167 + +A+ R ++ F GD WV L+ V R KL PR GP+++++ I AY+ Sbjct: 907 KKYANKGRKEVIFNEGDQVWVHLRKKRFPEV----RSSKLMPRIDGPFKVLKRINNNAYK 962 Query: 49166 LDL 49158 LDL Sbjct: 963 LDL 965 Score = 35.2 bits (79), Expect(2) = 8e-013 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = +2 Query: 8837 DYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRY 9016 D NN+T K ++P+ R+ I+L+SG H+ +++E D KT + Sbjct: 527 DCRAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQ 586 Query: 9017 GHYLFLVIFIVLT 9055 Y +LV+ LT Sbjct: 587 RLYEWLVMPFGLT 599 Score = 33.6 bits (75), Expect(2) = 6.2 Identities = 13/29 (44%), Positives = 19/29 (64%) Frame = +1 Query: 11074 VNKGKLIPRFIGSYKIYKRVGNQVYELEL 11160 V KL+PR G +K+ KR+ N Y+L+L Sbjct: 937 VRSSKLMPRIDGPFKVLKRINNNAYKLDL 965 Score = 25.4 bits (54), Expect(2) = 0.64 Identities = 15/42 (35%), Positives = 27/42 (63%), Gaps = 6/42 (14%) Frame = -3 Query: 49512 HSSIQMAPYEALYGRKCRSPIGWFDV---GETKLIG---PDMIQQVVD 49387 HS+ + +P+E +YG K SP+ + + L G D++QQV++ Sbjct: 851 HSATKFSPFEIVYGFKPTSPLDLIPLPLSERSSLDGKKKDDLVQQVLN 898 Score = 23.9 bits (50), Expect(2) = 6.2 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Frame = +2 Query: 10805 HSSIQMAPYEALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQERMMTTQSCKKF 10984 HS+ + +P+E +YG + + L + S LD + D ++ + T+ KK+ Sbjct: 851 HSATKFSPFEIVYGFKPTSPLDLIPLPLSERSSLDGKKK-DDLVQQVLNLEARTKQYKKY 909 Query: 10985 NTDIRRRPLECEVDD-WVYLK 11044 R+ + E D WV+L+ Sbjct: 910 ANKGRKEVIFNEGDQVWVHLR 930 >emb|CAA04050.1| (AJ000387) protease [Drosophila melanogaster] Length = 1217 Score = 261 bits (660), Expect = 7e-067 Identities = 158/463 (34%), Positives = 249/463 (53%), Gaps = 9/463 (1%) Frame = -2 Query: 51832 HLVRVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYR 51653 H++ H +N E T + L +F D+F KI +I + D PI YR Sbjct: 267 HILTEH-LNPEEKTALTTLC-KQFRDIFYNPETPLTFTNKITHSIPTI-DNTPIHTKSYR 323 Query: 51652 MAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKK-DGS----LQMSIEYKQLNKV 51488 E+K+Q+ +L++ IR S SPW APV V KK DG+ ++ I+Y++LN Sbjct: 324 YPFVHKTEVKKQIESMLDQQIIRSSHSPWSAPVWVVPKKLDGTGNRKWRLVIDYRKLNDK 383 Query: 51487 TVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVL 51308 T+ +RYP+P I+D+ D + AK FS +DL S +H++ + DI KTAF GHY+F + Sbjct: 384 TISDRYPIPNINDILDSIGKAKYFSTLDLTSGFHQIEMNPKDIAKTAFTVEGGHYEFTRM 443 Query: 51307 SFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKL 51128 FG+ NA A F +M+ V + ++DDI+++S S ++H ++ V L+ Sbjct: 444 PFGLKNAPATFQRVMDSVLGDLNGTICLFYLDDIIIFSPSLQKHLLDIKMVFEKLRAANF 503 Query: 51127 YAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRR 50948 SK EF + FLGHI+ DG++ + KI A+K + PT ++SFL L YYR+ Sbjct: 504 KLQPSKSEFLRKEIEFLGHIVTQDGVKPNPNKISAIKKFPCPTNRRAIKSFLGLLGYYRK 563 Query: 50947 FVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDT 50768 F+ FA I+ P+ + + + +F K L+ P L P+ +++ D Sbjct: 564 FIRDFARITKPMTKQLKGKRQVTTDKDFVDAFEQCKTLLSNDPILIHPDFEKPFILTTDA 623 Query: 50767 SGVGLGCVL----MQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHV 50600 S LG VL +Q+ + + +ASR L E NY T + ++ ++ A+K +R Y+YG Sbjct: 624 SNFALGAVLSQGSLQNDRPVCFASRTLSDTEVNYSTIEKEMLAIIWAVKYFRPYIYGVKF 683 Query: 50599 DIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 I TDHK L ++ KE + RW L +Y+ +I++ G NV+ DALSR Sbjct: 684 TIVTDHKPLIWLMNFKEPNSKIIRWRLQLMEYNFEIIHKKGSQNVIADALSR 735 Score = 71.4 bits (172), Expect(2) = 1e-018 Identities = 42/128 (32%), Positives = 66/128 (50%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F +M V +S + + H D+++V + LR ++ SK Sbjct: 450 APATFQRVMDSVLGDLNGTICLFYLDDIIIFSPSLQKHLLDIKMVFEKLRAANFKLQPSK 509 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF K + FLGHI++ +G++ + KI + FP P + I SFL L YYR+F+ F+ Sbjct: 510 SEFLRKEIEFLGHIVTQDGVKPNPNKISAIKKFPCPTNRRAIKSFLGLLGYYRKFIRDFA 569 Query: 9418 SISSPLTK 9441 I+ P+TK Sbjct: 570 RITKPMTK 577 Score = 53.5 bits (126), Expect = 3e-004 Identities = 44/197 (22%), Positives = 85/197 (42%), Gaps = 6/197 (3%) Frame = -3 Query: 50058 WWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K 49879 ++ MK I+E + C C +K + Q + + E P+ ++I++D T Sbjct: 885 YFPNMKNKISELIRNCETCLKLKYDRQPQNIVFETPETPSKPLDIIHIDIYTINNNFN-- 942 Query: 49878 *DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFW 49699 IID+ +K A P+ ++ G+P +I D+G +F + + Sbjct: 943 ----LTIIDKFSKFAAVYPIPNRNGINCIKA--IKNFFSQFGLPKKLIHDQGVEFCNDIF 996 Query: 49698 RSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSW---DDHLPLIE-- 49534 R F +++++ ++ ER +L ++ R I+D + DH ++ Sbjct: 997 RKFCSQYNILLHVTSFQQSSSNSPVERLHSSLTEIYRI-ILDTRKKHKLPTDHEEIMSET 1055 Query: 49533 -FAYNNHYHSSIQMAPYEALYGR 49468 YNN HS+ + P+E GR Sbjct: 1056 VITYNNAIHSTTKHTPFELFNGR 1078 Score = 50.4 bits (118), Expect(2) = 1e-018 Identities = 31/97 (31%), Positives = 46/97 (46%), Gaps = 5/97 (5%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKK-----K*YLRICIDYLQFNNVTTKKKYPLLRIYGXX 8905 M D+ I + SPW A V + KK R+ IDY + N+ T +YP+ I Sbjct: 339 MLDQQIIRSSHSPWSAPVWVVPKKLDGTGNRKWRLVIDYRKLNDKTISDRYPIPNINDIL 398 Query: 8906 XXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLF 9031 ++L SG H++++ D+ KT F GHY F Sbjct: 399 DSIGKAKYFSTLDLTSGFHQIEMNPKDIAKTAFTVEGGHYEF 440 >gb|AAA21442.1| (M77661) putative pol polyprotein [Pyricularia grisea] Length = 1398 Score = 261 bits (660), Expect = 7e-067 Identities = 153/431 (35%), Positives = 242/431 (55%), Gaps = 9/431 (2%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVK 51479 Y M +L EL+ Q+ D+++KG+IR S+S APVL VRK G ++ ++Y+ LN +T++ Sbjct: 366 YHMPREQLLELRRQIVDMMDKGWIRASSSSAAAPVLMVRKASGGWRLCVDYRALNSITMQ 425 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 +RYPLP I + L GA+ F+K+D+R+++H++R+ E D TAF TR+G +++ V FG Sbjct: 426 DRYPLPLIKETIRSLTGARWFTKVDVRAAFHKLRIAEGDEHLTAFRTRFGLFEWLVCPFG 485 Query: 51298 MTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSR-SEEEHADHLRTVLRVLQHQKLYA 51122 + A A F +N V L + ++DDIL+YS S+ +H + VL L L Sbjct: 486 LAGAPATFQRYVNGVLGDTLGDYASAYLDDILIYSSGSKSDHWSKVTRVLDKLAAAGLNL 545 Query: 51121 MFSKCEFWLTSLAFLGHIIGA-DGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRF 50945 K F + + +LG I+ A +G++ D +KI+A++ W PT +R FL A +YR F Sbjct: 546 DLDKSAFAVKEVKYLGFIVKAGEGVQADPEKIKAIRDWEAPTRLRGLRGFLGFANFYRDF 605 Query: 50944 VEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTS 50765 ++ ++ ++APL+ LT+K F WT E +F LK AP L + + D S Sbjct: 606 IDGYSTLTAPLLALTKKGTPFRWTEELEGAFEALKHAFLQAPILAQWDDAKDTRMETDCS 665 Query: 50764 GVGLGCVLMQHG-----KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHV 50600 G LG L Q G + +A+ S +L + NY HD +L V+ LK W L Sbjct: 666 GAALGGCLSQKGTDGLWRPVAFHSAKLTDAQRNYTIHDKELLAVIACLKAWDAELRSVRR 725 Query: 50599 D--IYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSMGSL 50426 I TDHK+L+Y K +E+ RQ RW E L ++ ++ + G+ V DALSR+ Sbjct: 726 PFLILTDHKALEYFSKPREVSERQMRWAETLSKFNYNLRFRPGRLAGVPDALSRREQDEC 785 Query: 50425 TDVQPEMREMVRDIQRLSSL 50366 T P + ++R + ++L Sbjct: 786 T--TPRLTTVLRPARPRTNL 803 Score = 125 bits (311), Expect = 6e-026 Identities = 72/197 (36%), Positives = 102/197 (51%), Gaps = 1/197 (0%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRT-Q 49885 Y WDGM + + FV C C+ K + GLLQ + IP W+ I++DF+T LP + Sbjct: 922 YHWDGMAEHVRRFVRNCDICRRTKPSRRARQGLLQPLPIPDRFWKQISIDFMTDLPGNGE 981 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + VI DRL+K L + AED ++ R G P+ IISDRG+ + Sbjct: 982 VTPRYLMVITDRLSKYVQ-LEAMHSMKAEDCAARFLSSWWRFRGFPSQIISDRGSDWVGG 1040 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 FW + G + LST++HP+TDG +ER Q ++ LRA I +G W DHL + A Sbjct: 1041 FWTELCRQTGVEQLLSTSYHPETDGGTERANQEVQQYLRAYIAFDQGDWPDHLGAAQLAL 1100 Query: 49524 NNHYHSSIQMAPYEALYG 49471 NN S +P + L G Sbjct: 1101 NNRNSSVTGTSPNKLLLG 1118 Score = 63.6 bits (152), Expect(2) = 9e-018 Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 2/149 (1%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYS-WNKEDHASDLRIVLQTLRNKE*CVKFS 9234 APA F ++ V L + YS +K DH S + VL L + Sbjct: 489 APATFQRYVNGVLGDTLGDYASAYLDDILIYSSGSKSDHWSKVTRVLDKLAAAGLNLDLD 548 Query: 9235 K*EFCLKYVVFLGHII-SGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDR 9411 K F +K V +LG I+ +GEG++ D EKI++ + P + + FL A +YR F+D Sbjct: 549 KSAFAVKEVKYLGFIVKAGEGVQADPEKIKAIRDWEAPTRLRGLRGFLGFANFYRDFIDG 608 Query: 9412 FSSISSPLTKIT*TKVQFQ*SEGCE*RFREL 9504 +S++++PL +T F+ +E E F L Sbjct: 609 YSTLTAPLLALTKKGTPFRWTEELEGAFEAL 639 Score = 62.5 bits (149), Expect = 6e-007 Identities = 55/242 (22%), Positives = 107/242 (43%), Gaps = 2/242 (0%) Frame = +2 Query: 10121 GVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFV 10300 G L+Y+ RL +PN + +++++H + SG + +L Y G+ + + +FV Sbjct: 876 GALQYRGRLWLPNWEPLTTAVLQRTHESPMVGHSGRDGTFAILARDYHWDGMAEHVRRFV 935 Query: 10301 AMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRR-QHNSIFVIVDRLT 10477 ++ K + GL + + +P W+ I++DF+ + + VI DRL+ Sbjct: 936 RNCDICRRTKPSRRARQGLLQPLPIPDRFWKQISIDFMTDLPGNGEVTPRYLMVITDRLS 995 Query: 10478 KSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQG-SKL 10654 K L+ + AED A ++ R GF IIS+R + + W + G +L Sbjct: 996 KYVQ-LEAMHSMKAEDCAARFLSSWWRFRGFPSQIISDRGSDWVGGFWTELCRQTGVEQL 1054 Query: 10655 N*VLLFILKEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYE 10834 + + + ++ LRA + + +W D++ + + NN S +P + Sbjct: 1055 LSTSYHPETDGGTERANQEVQQYLRAYIAFDQGDWPDHLGAAQLALNNRNSSVTGTSPNK 1114 Query: 10835 ALYG 10846 L G Sbjct: 1115 LLLG 1118 Score = 55.0 bits (130), Expect(2) = 9e-018 Identities = 31/99 (31%), Positives = 50/99 (50%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 M DK +I + S A VL +RK R+C+DY N++T + +YPL I Sbjct: 383 MMDKGWIRASSSSAAAPVLMVRKASGGWRLCVDYRALNSITMQDRYPLPLIKETIRSLTG 442 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLV 9037 +++R+ HK+++ E D T F R+G + +LV Sbjct: 443 ARWFTKVDVRAAFHKLRIAEGDEHLTAFRTRFGLFEWLV 481 >emb|CAA65152.1| (X95908) orf [Drosophila melanogaster] Length = 1494 Score = 259 bits (655), Expect = 3e-066 Identities = 147/416 (35%), Positives = 242/416 (57%), Gaps = 6/416 (1%) Frame = -2 Query: 51691 LLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSI 51512 L + +P P R++ E L++ L + LE GFIRPS S + +P++ V+KK G L+M + Sbjct: 711 LKNPKPFSCSPRRLSYTEKDRLQKLLDEYLENGFIRPSDSEYASPIVLVKKKTGDLRMCV 770 Query: 51511 EYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRY 51332 ++++LNK+T+K+ YPLP IDDL D++ F+K+DL++ + V V++ I T+F T Sbjct: 771 DFRKLNKMTMKDNYPLPLIDDLLDRMNEKTVFTKLDLKNGFFHVHVKKESIKYTSFVTPL 830 Query: 51331 GHYDFRVLSFGMTNALAVFMDLMNRVFKPFL-DMFVIVFVDDILVYSRSEEEHADHLRTV 51155 G Y++ + FG+ NA +VF +N++F + + V+V++DDIL+ + + EH + L+ + Sbjct: 831 GQYEWLRMPFGLKNAPSVFQRFVNKIFADMIRENKVVVYMDDILLATENINEHLETLKEI 890 Query: 51154 LRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSF 50975 + L KL KCEF +S+ +LG II DGI + + IEA+K + P V+SF Sbjct: 891 FKRLVENKLELRIDKCEFMQSSIKYLGFIINKDGIMPNDKGIEAIKNFPIPNNVHTVQSF 950 Query: 50974 LELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGP 50795 L L Y+RRF++ F+ ++ PL + +K F + + F +LKDKL +P L + Sbjct: 951 LGLCSYFRRFIKDFSRLAKPLHDILKKDKPFKFGSEEMICFNMLKDKLIQSPVLAIYNHK 1010 Query: 50794 DGYVIYCDTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIVVHALKI 50630 ++CD S G G VLMQ + +++ S++ E+ Y + +L+ +V++L+ Sbjct: 1011 HETELHCDASSSGFGAVLMQKKEDQKWHPVSFFSKRTTDIESKYHSFELETLAIVYSLRR 1070 Query: 50629 WRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDAL 50450 +R YL+ I TD SL +KEL R RW + YD +I++ G VDAL Sbjct: 1071 FRVYLHWRTFKIVTDCNSLILTLSKKELNPRIARWALEFQGYDFEIVHRAGSRMQHVDAL 1130 Query: 50449 SR 50444 SR Sbjct: 1131 SR 1132 Score = 81.5 bits (198), Expect = 1e-012 Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 7/234 (2%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 + QV+ + H+ + G KM + YW+ +K+ + ++ C C + K+ Sbjct: 1197 MEEQVLYKYHNELGHV--GRDKMIEAIMKNYWFPNLKQKCSTHISNCLKCISFSPKTGKT 1254 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAE-- 49798 G L I +E+I++D + + K I VI+D TK +TT + E Sbjct: 1255 EGFLHNIPKGNKPFEIIHIDHYGPVDLARPK-KHILVIVDAFTKFVRLYATKTTNTKEVI 1313 Query: 49797 ----DYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDG 49630 DY R Y R P IISDRGA FT+ + SF K + T PQ +G Sbjct: 1314 QSLNDYFRAYSR--------PKCIISDRGACFTSGDFDSFLKECNVKHIKIATGSPQANG 1365 Query: 49629 KSERTIQTLEDMLRASIIDFKG-SWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 + ER ++L M+ I +G WD L +E+ NN H SI+ P L+G + + Sbjct: 1366 QVERINRSLGPMISKLIEPDQGLHWDLVLEKVEYTLNNTLHRSIKQYPSIMLFGLQQKGQ 1425 Query: 49452 I 49450 I Sbjct: 1426 I 1426 Score = 54.3 bits (128), Expect = 2e-004 Identities = 31/96 (32%), Positives = 51/96 (52%) Frame = +1 Query: 9157 NKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SF 9336 N +H L+ + + L + ++ K EF + +LG II+ +GI + + IE+ +F Sbjct: 879 NINEHLETLKEIFKRLVENKLELRIDKCEFMQSSIKYLGFIINKDGIMPNDKGIEAIKNF 938 Query: 9337 PRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKI 9444 P P + SFL L Y+RRF+ FS ++ PL I Sbjct: 939 PIPNNVHTVQSFLGLCSYFRRFIKDFSRLAKPLHDI 974 Score = 45.7 bits (106), Expect = 0.062 Identities = 24/96 (25%), Positives = 48/96 (50%) Frame = +2 Query: 8747 DKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXX 8926 + FI + S + + ++ ++KK LR+C+D+ + N +T K YPL I Sbjct: 741 ENGFIRPSDSEYASPIVLVKKKTGDLRMCVDFRKLNKMTMKDNYPLPLIDDLLDRMNEKT 800 Query: 8927 XXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFL 9034 ++L++G + V++ + T+F+ G Y +L Sbjct: 801 VFTKLDLKNGFFHVHVKKESIKYTSFVTPLGQYEWL 836 Score = 39.9 bits (91), Expect = 3.5 Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 5/208 (2%) Frame = +2 Query: 10223 GSIKMYRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIIN 10402 G KM + + Y LK+ ++ + + G NI +EII+ Sbjct: 1213 GRDKMIEAIMKNYWFPNLKQKCSTHISNCLKCISFSPKTGKTEGFLHNIPKGNKPFEIIH 1272 Query: 10403 MDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFI 10582 +D +R + + I VIVD TK +TN E L R + I Sbjct: 1273 IDHYGPVDLARPKKH-ILVIVDAFTKFVRLYATKTTNTKEVIQSL--NDYFRAYSRPKCI 1329 Query: 10583 ISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILKEVEKQCTIKTLEYMLRACVI-----DF 10747 IS+R A FT+ + SF K K + + ++ + L + D Sbjct: 1330 ISDRGACFTSGDFDSFLKECNVKH---IKIATGSPQANGQVERINRSLGPMISKLIEPDQ 1386 Query: 10748 KVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYG 10846 ++WD + +EY+ NN+ H SI+ P L+G Sbjct: 1387 GLHWDLVLEKVEYTLNNTLHRSIKQYPSIMLFG 1419 >emb|CAB39733.1| (AJ133521) protease, reverse transcriptase, ribonuclease H, integrase [Drosophila buzzatii] Length = 1147 Score = 255 bits (645), Expect = 4e-065 Identities = 144/417 (34%), Positives = 235/417 (55%), Gaps = 6/417 (1%) Frame = -2 Query: 51685 DTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVR-KKDGSLQMSIE 51509 DT+PI + P E+ +Q+ +LL KG I PS SP + +K+G ++ ++ Sbjct: 291 DTRPIKQRYFPKNPKMQAEINKQVDELLVKGCIEPSKSPHTRTYSNGQGRKNGKWRLCVD 350 Query: 51508 YKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTR-Y 51332 ++QLN ++K+ YPLPR+ + DQL+ A+ + +DL+ Y ++ + ++ P TAF Sbjct: 351 FRQLNSRSIKDAYPLPRVHHILDQLREARYITSLDLKDGYWQIPMEKSSRPLTAFTVPGK 410 Query: 51331 GHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVL 51152 G + ++V+ FG+ +A A F +++V P + ++DDI+V R+ +EH D+LR V Sbjct: 411 GLFQWKVMPFGLHSAPATFQRALDQVIGPDMMPHAFAYLDDIIVIGRTRQEHMDNLREVF 470 Query: 51151 RVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFL 50972 R L+ L KC+F+ L +LGH + +GIR D +K+ A+ PT E+R ++ Sbjct: 471 RRLRAANLRINIDKCDFFKKELKYLGHKVTENGIRTDPEKVAAIAQLKPPTNVKELRQYV 530 Query: 50971 ELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPD 50792 +A +YRR+V FA PL L +K K+ WT +R+F +K KLT +P L P+ Sbjct: 531 GVASWYRRYVPDFASTVHPLNALLKKGVKWEWTEEHQRAFETVKAKLTESPVLACPDFSK 590 Query: 50791 GYVIYCDTSGVGLGCVLMQHG----KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWR 50624 + + D S GLG +L Q +VI+YASR L E NY + + ++ ++ R Sbjct: 591 PFCLQTDASNYGLGAILTQTSEEGERVISYASRTLNSAERNYSATEKECLAIIWGIRKLR 650 Query: 50623 HYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 YL G+H + TDH +L+++ + R RW L+ YD ++ Y GK NVV DALSR Sbjct: 651 PYLEGYHFIVITDHMALKWLNSIESPSGRIARWALELQQYDFEVRYRKGKQNVVADALSR 710 Query: 50443 KSM 50435 + + Sbjct: 711 QPL 713 Score = 108 bits (266), Expect = 1e-020 Identities = 74/273 (27%), Positives = 133/273 (48%), Gaps = 8/273 (2%) Frame = -3 Query: 50148 RRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG 49969 R+QV+ E H A + + GS K + Y+W GM +D+ +V +C CQ K ++ Sbjct: 784 RKQVLKENHDAVTAGHLGSRKTIARVAARYYWPGMYRDVRNYVQRCEVCQRYKPSQLQAA 843 Query: 49968 GLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYV 49789 G + ++P W + DF+ LPR++ + V IDR +K +P+R+ +A Sbjct: 844 GQML-TQVPEEPWATVCADFVGPLPRSKHGNTMLLVFIDRFSKWTEMVPLRSANTAA-LQ 901 Query: 49788 RLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQ 49609 + + I+ G P +I+D G QFT+ +++F LG + L+ + PQ + +ER + Sbjct: 902 KAFRERILARFGAPKVLITDNGTQFTSRAFKNFLDELGVRHQLTAPYTPQ-ENPTERANR 960 Query: 49608 TLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDV-- 49435 T++ M+ + WD+ LP + A N+ +S GR+ R P FD Sbjct: 961 TVKTMIAQFAGSDQRCWDEALPELTLAVNSSVSASTGYTAAFITQGREPRLPKTMFDAQT 1020 Query: 49434 ------GETKLIGPDMIQQVVDKVKLIQERLLASQSR*KSC 49330 ++ + +++V++ V+ ER Q+R C Sbjct: 1021 LGTGQEAQSPIERAAKMREVLEIVRRNLERAAQDQARITIC 1061 Score = 59.3 bits (141), Expect(2) = 3e-010 Identities = 37/140 (26%), Positives = 65/140 (46%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F + +V P + +++H +LR V + LR + K Sbjct: 425 APATFQRALDQVIGPDMMPHAFAYLDDIIVIGRTRQEHMDNLREVFRRLRAANLRINIDK 484 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 +F K + +LGH ++ GIR D EK+ + P K + ++ +A +YRR+V F+ Sbjct: 485 CDFFKKELKYLGHKVTENGIRTDPEKVAAIAQLKPPTNVKELRQYVGVASWYRRYVPDFA 544 Query: 9418 SISSPLTKIT*TKVQFQ*SE 9477 S PL + V+++ +E Sbjct: 545 STVHPLNALLKKGVKWEWTE 564 Score = 54.7 bits (129), Expect = 1e-004 Identities = 73/356 (20%), Positives = 144/356 (39%), Gaps = 2/356 (0%) Frame = +2 Query: 9791 RWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLGVRIMD 9970 RW + YD + Y GK NVV +L R + L +D L + Sbjct: 682 RWALELQQYDFEVRYRKGKQNVVADALSR------------QPLEEDACCLAK------- 722 Query: 9971 STEGGIVVTNGAESSLVS*VKEK*DQDPI-FLVLKENVKN-QRVLAFEQGGDGVLKYQER 10144 S E +G + +++ + P F +E N R + + G + V + + Sbjct: 723 SRE----TPDGTACRWLQRLRQDMRKAPQKFADYREEAGNIYRHIPHQAGHEDVAAW--K 776 Query: 10145 LCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSNYQQ 10324 LCV Q +++++H + GS K + Y G+ +D+ +V Q+ Sbjct: 777 LCVSTDRRKQ--VLKENHDAVTAGHLGSRKTIARVAARYYWPGMYRDVRNYVQRCEVCQR 834 Query: 10325 VKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVS 10504 K + G ++P W + DF+ S+ + + V +DR +K + + + Sbjct: 835 YKPSQLQAAGQMLT-QVPEEPWATVCADFVGPLPRSKHGNTMLLVFIDRFSKWTEMVPLR 893 Query: 10505 STNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILKE 10684 S N A K + +++ G +I++ FT++ +K+F G + + +E Sbjct: 894 SANTAA-LQKAFRERILARFGAPKVLITDNGTQFTSRAFKNFLDELGVRHQLTAPYTPQE 952 Query: 10685 VEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGRRGR 10858 + +T++ M+ + WD+ +P + + N+S +S Y A + +GR Sbjct: 953 NPTERANRTVKTMIAQFAGSDQRCWDEALPELTLAVNSSVSAS---TGYTAAFITQGR 1007 Score = 34.0 bits (76), Expect(2) = 3e-010 Identities = 15/60 (25%), Positives = 30/60 (50%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+C+D+ Q N+ + K YPL R++ +++L+ G ++ + + P T F Sbjct: 346 RLCVDFRQLNSRSIKDAYPLPRVHHILDQLREARYITSLDLKDGYWQIPMEKSSRPLTAF 405 >gb|AAC33318.1| (AF056940) pol polyprotein [Drosophila virilis] Length = 1188 Score = 254 bits (642), Expect = 9e-065 Identities = 142/376 (37%), Positives = 218/376 (57%), Gaps = 9/376 (2%) Frame = -2 Query: 51571 PWGAPVLFVRKKDGSL-----QMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKI 51407 P G PV+ V K++ + ++ I+Y+ N++T+ ++YP+P +D++ D+L + F+ I Sbjct: 358 PNGLPVIIVPKRNDAFGKPKFRLVIDYRHFNELTINDKYPIPIMDEILDKLGKCQYFTTI 417 Query: 51406 DLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFV 51227 DL +H++++ IPKTAF T++GHY++ + FG+ NA A F MN + + + Sbjct: 418 DLAKGFHQIQMDPGSIPKTAFSTKHGHYEYTRMPFGLKNAPATFQRCMNNLLEDLIFKDC 477 Query: 51226 IVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIR 51047 +V +DDI+++S S EEH L+ V + L+ L KCEF FLGHII +GI+ Sbjct: 478 LVHLDDIIIFSTSLEEHILSLQKVFKKLREANLKLQLDKCEFMRKETEFLGHIITTEGIK 537 Query: 51046 VDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNA 50867 + KI+A+ + P TP E++SFL L +YR+F+ FA I PL L K +K N Sbjct: 538 PNPNKIQAIVKFPIPKTPKEIKSFLGLCGFYRKFIPNFANIVKPL-TLKLKGSKI---NI 593 Query: 50866 CERSF*LLKDKL----TIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQL 50699 +R + L +KL T P L P + + D S + +G VL Q K I YASR L Sbjct: 594 KDRDYELAFEKLKVLITSDPILIYPNFEKPFSLTTDASNMAIGAVLSQEHKPICYASRTL 653 Query: 50698 RKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLE 50519 +HE NY T + +L +V A K +R YL+G I +DH+ L ++ KE ++ +RW Sbjct: 654 NEHELNYSTIEKELLAIVWATKYFRSYLFGRQFQILSDHRPLVWLNNMKEPNMKLQRWKI 713 Query: 50518 LLKDYDVDILYHLGKANVVVDALSR 50444 L ++D I Y GK N V DALSR Sbjct: 714 KLNEFDFQIKYVPGKENYVADALSR 738 Score = 76.5 bits (185), Expect(2) = 4e-018 Identities = 45/127 (35%), Positives = 66/127 (51%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M+ + + + +S + E+H L+ V + LR ++ K Sbjct: 457 APATFQRCMNNLLEDLIFKDCLVHLDDIIIFSTSLEEHILSLQKVFKKLREANLKLQLDK 516 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF K FLGHII+ EGI+ + KI++ FP P PK I SFL L +YR+F+ F+ Sbjct: 517 CEFMRKETEFLGHIITTEGIKPNPNKIQAIVKFPIPKTPKEIKSFLGLCGFYRKFIPNFA 576 Query: 9418 SISSPLT 9438 +I PLT Sbjct: 577 NIVKPLT 583 Score = 43.4 bits (100), Expect(2) = 4e-018 Identities = 21/67 (31%), Positives = 33/67 (48%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+ IDY FN +T KYP+ + I+L G H++++ +PKT F Sbjct: 379 RLVIDYRHFNELTINDKYPIPIMDEILDKLGKCQYFTTIDLAKGFHQIQMDPGSIPKTAF 438 Query: 9005 IKRYGHY 9025 ++GHY Sbjct: 439 STKHGHY 445 Score = 34.8 bits (78), Expect(2) = 0.003 Identities = 19/59 (32%), Positives = 36/59 (60%) Frame = +3 Query: 9594 KVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL*YVFTLK 9770 K I Y S+ L +E NY T + EL ++V++ K + +L+G + I +D++ L ++ +K Sbjct: 644 KPICYASRTLNEHELNYSTIEKELLAIVWATKYFRSYLFGRQFQILSDHRPLVWLNNMK 702 Score = 34.4 bits (77), Expect(2) = 0.003 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = +2 Query: 9746 PLICIH-FKIANLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSM 9886 PL+ ++ K N+K +RW ++D I Y PGK N V +L R+ + Sbjct: 694 PLVWLNNMKEPNMKLQRWKIKLNEFDFQIKYVPGKENYVADALSRIQL 741 >gb|AAA98435.1| (M34549) POL3 [Saccharomyces cerevisiae] Length = 1270 Score = 252 bits (637), Expect = 3e-064 Identities = 147/408 (36%), Positives = 227/408 (55%), Gaps = 7/408 (1%) Frame = -2 Query: 51667 IPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKV 51488 + PY + +E+ + ++ LL+ FI PS SP +PV+ V KKDG+ ++ ++Y+ LNK Sbjct: 322 LQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKA 381 Query: 51487 TVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVL 51308 T+ + +PLPRID+L ++ A+ F+ +DL S YH++ + D KTAF T G Y++ V+ Sbjct: 382 TISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVM 441 Query: 51307 SFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKL 51128 FG+ NA + F M F+ FV V++DDIL++S S EEH HL TVL L+++ L Sbjct: 442 PFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENL 499 Query: 51127 YAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRR 50948 KC+F FLG+ IG I K A++ + P T + + FL + YYRR Sbjct: 500 IVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRR 559 Query: 50947 FVEKFALISAPL-IRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD 50771 F+ + I+ P+ + + K+ WT +++ LKD L +P L Y + D Sbjct: 560 FIPNCSKIAQPIQLFICDKSQ---WTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTD 616 Query: 50770 TSGVGLGCVLMQHGK------VIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYG 50609 S G+G VL + V+ Y S+ L + NYP +L+L ++ AL +R+ L+G Sbjct: 617 ASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHG 676 Query: 50608 FHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 H + TDH SL + + E R +RWL+ L YD + Y G NVV DA+SR Sbjct: 677 KHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISR 731 Score = 148 bits (371), Expect(2) = 9e-038 Identities = 77/204 (37%), Positives = 114/204 (55%) Frame = -3 Query: 50064 LYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 +Y+W ++ I +++ C CQ +K + GLLQ + I +W I+MDF+TGLP T Sbjct: 848 IYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTS 907 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + I V++DR +K AHF+ R T A + L R I HG P +I SDR + T + Sbjct: 908 NNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTAD 967 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 ++ K LG + +S+ HPQTDG+SERTIQTL +LRA +W +LP IEF Y Sbjct: 968 KYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVY 1027 Query: 49524 NNHYHSSIQMAPYEALYGRKCRSP 49453 N+ ++ +P+E G +P Sbjct: 1028 NSTPTRTLGKSPFEIDLGYLPNTP 1051 Score = 87.0 bits (212), Expect = 2e-014 Identities = 66/239 (27%), Positives = 108/239 (44%), Gaps = 2/239 (0%) Frame = +2 Query: 10118 DGVLKYQERLCVPNMDGHQDLIMEKSHS-TTFSFDSGSIKMYRLLREVYTLKGLKKDIVK 10294 D ++ YQ+RL VP Q+ +M H T F G + +Y L+ I++ Sbjct: 803 DEMIYYQDRLVVPIKQ--QNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQ 860 Query: 10295 FVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRL 10474 ++ Q +K RL GL + + + +W I+MDF+ + N I V+VDR Sbjct: 861 YIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRF 920 Query: 10475 TKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKL 10654 +K +HF+ T A L + + HGF I S+R TA ++ K G K Sbjct: 921 SKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKS 980 Query: 10655 N*VLL-FILKEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPY 10831 + + + TI+TL +LRA NW +P IE+ YN++ ++ +P+ Sbjct: 981 TMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPF 1040 Query: 10832 E 10834 E Sbjct: 1041 E 1041 Score = 53.1 bits (125), Expect(2) = 2e-013 Identities = 38/126 (30%), Positives = 56/126 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ F M F+ F +S + E+H L VL+ L+N+ VK K Sbjct: 448 APSTFARYMADTFRDLR--FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKK 505 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 +F + FLG+ I + I + K + FP P K FL + YYRRF+ S Sbjct: 506 CKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCS 565 Query: 9418 SISSPL 9435 I+ P+ Sbjct: 566 KIAQPI 571 Score = 50.8 bits (119), Expect(2) = 2e-013 Identities = 29/100 (29%), Positives = 45/100 (45%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + D FI + SP + V+ + KK R+C+DY N T +PL RI Sbjct: 342 LLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGN 401 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 ++L SG H++ + D KT F+ G Y + V+ Sbjct: 402 AQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVM 441 Score = 37.1 bits (84), Expect(2) = 9e-038 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Frame = -1 Query: 49370 KKDY*HPRVDRSHADN-RR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIV 49194 K+ H +++ +N RR L IGD V + + K+ Y+GP+++V Sbjct: 1081 KEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVH---RDAYFKKGAYMKVQQIYVGPFRVV 1137 Query: 49193 RWIGKVAYELDLPSDLEVVHPVFHVSMLRKCIGDP 49089 + I AYELDL S + H V +V L+K + P Sbjct: 1138 KKINDNAYELDLNSH-KKKHRVINVQFLKKFVYRP 1171 >emb|CAA97117.1| (Z72895) TY3B [Saccharomyces cerevisiae] Length = 1547 Score = 252 bits (637), Expect = 3e-064 Identities = 147/408 (36%), Positives = 227/408 (55%), Gaps = 7/408 (1%) Frame = -2 Query: 51667 IPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKV 51488 + PY + +E+ + ++ LL+ FI PS SP +PV+ V KKDG+ ++ ++Y+ LNK Sbjct: 599 LQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKA 658 Query: 51487 TVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVL 51308 T+ + +PLPRID+L ++ A+ F+ +DL S YH++ + D KTAF T G Y++ V+ Sbjct: 659 TISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVM 718 Query: 51307 SFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKL 51128 FG+ NA + F M F+ FV V++DDIL++S S EEH HL TVL L+++ L Sbjct: 719 PFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENL 776 Query: 51127 YAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRR 50948 KC+F FLG+ IG I K A++ + P T + + FL + YYRR Sbjct: 777 IVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRR 836 Query: 50947 FVEKFALISAPL-IRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD 50771 F+ + I+ P+ + + K+ WT +++ LKD L +P L Y + D Sbjct: 837 FIPNCSKIAQPIQLFICDKSQ---WTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTD 893 Query: 50770 TSGVGLGCVLMQHGK------VIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYG 50609 S G+G VL + V+ Y S+ L + NYP +L+L ++ AL +R+ L+G Sbjct: 894 ASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHG 953 Query: 50608 FHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 H + TDH SL + + E R +RWL+ L YD + Y G NVV DA+SR Sbjct: 954 KHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISR 1008 Score = 148 bits (371), Expect(2) = 9e-038 Identities = 77/204 (37%), Positives = 114/204 (55%) Frame = -3 Query: 50064 LYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 +Y+W ++ I +++ C CQ +K + GLLQ + I +W I+MDF+TGLP T Sbjct: 1125 IYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTS 1184 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + I V++DR +K AHF+ R T A + L R I HG P +I SDR + T + Sbjct: 1185 NNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTAD 1244 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 ++ K LG + +S+ HPQTDG+SERTIQTL +LRA +W +LP IEF Y Sbjct: 1245 KYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVY 1304 Query: 49524 NNHYHSSIQMAPYEALYGRKCRSP 49453 N+ ++ +P+E G +P Sbjct: 1305 NSTPTRTLGKSPFEIDLGYLPNTP 1328 Score = 87.0 bits (212), Expect = 2e-014 Identities = 66/239 (27%), Positives = 108/239 (44%), Gaps = 2/239 (0%) Frame = +2 Query: 10118 DGVLKYQERLCVPNMDGHQDLIMEKSHS-TTFSFDSGSIKMYRLLREVYTLKGLKKDIVK 10294 D ++ YQ+RL VP Q+ +M H T F G + +Y L+ I++ Sbjct: 1080 DEMIYYQDRLVVPIKQ--QNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQ 1137 Query: 10295 FVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRL 10474 ++ Q +K RL GL + + + +W I+MDF+ + N I V+VDR Sbjct: 1138 YIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRF 1197 Query: 10475 TKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKL 10654 +K +HF+ T A L + + HGF I S+R TA ++ K G K Sbjct: 1198 SKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKS 1257 Query: 10655 N*VLL-FILKEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPY 10831 + + + TI+TL +LRA NW +P IE+ YN++ ++ +P+ Sbjct: 1258 TMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPF 1317 Query: 10832 E 10834 E Sbjct: 1318 E 1318 Score = 53.1 bits (125), Expect(2) = 2e-013 Identities = 38/126 (30%), Positives = 56/126 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ F M F+ F +S + E+H L VL+ L+N+ VK K Sbjct: 725 APSTFARYMADTFRDLR--FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKK 782 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 +F + FLG+ I + I + K + FP P K FL + YYRRF+ S Sbjct: 783 CKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCS 842 Query: 9418 SISSPL 9435 I+ P+ Sbjct: 843 KIAQPI 848 Score = 50.8 bits (119), Expect(2) = 2e-013 Identities = 29/100 (29%), Positives = 45/100 (45%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + D FI + SP + V+ + KK R+C+DY N T +PL RI Sbjct: 619 LLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGN 678 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 ++L SG H++ + D KT F+ G Y + V+ Sbjct: 679 AQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVM 718 Score = 37.1 bits (84), Expect(2) = 9e-038 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Frame = -1 Query: 49370 KKDY*HPRVDRSHADN-RR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIV 49194 K+ H +++ +N RR L IGD V + + K+ Y+GP+++V Sbjct: 1358 KEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVH---RDAYFKKGAYMKVQQIYVGPFRVV 1414 Query: 49193 RWIGKVAYELDLPSDLEVVHPVFHVSMLRKCIGDP 49089 + I AYELDL S + H V +V L+K + P Sbjct: 1415 KKINDNAYELDLNSH-KKKHRVINVQFLKKFVYRP 1448 >emb|CAA97115.1| (Z72894) TY3B [Saccharomyces cerevisiae] Length = 1547 Score = 252 bits (637), Expect = 3e-064 Identities = 147/408 (36%), Positives = 227/408 (55%), Gaps = 7/408 (1%) Frame = -2 Query: 51667 IPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKV 51488 + PY + +E+ + ++ LL+ FI PS SP +PV+ V KKDG+ ++ ++Y+ LNK Sbjct: 599 LQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKA 658 Query: 51487 TVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVL 51308 T+ + +PLPRID+L ++ A+ F+ +DL S YH++ + D KTAF T G Y++ V+ Sbjct: 659 TISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVM 718 Query: 51307 SFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKL 51128 FG+ NA + F M F+ FV V++DDIL++S S EEH HL TVL L+++ L Sbjct: 719 PFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENL 776 Query: 51127 YAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRR 50948 KC+F FLG+ IG I K A++ + P T + + FL + YYRR Sbjct: 777 IVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRR 836 Query: 50947 FVEKFALISAPL-IRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD 50771 F+ + I+ P+ + + K+ WT +++ LKD L +P L Y + D Sbjct: 837 FIPNCSKIAQPIQLFICDKSQ---WTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTD 893 Query: 50770 TSGVGLGCVLMQHGK------VIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYG 50609 S G+G VL + V+ Y S+ L + NYP +L+L ++ AL +R+ L+G Sbjct: 894 ASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHG 953 Query: 50608 FHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 H + TDH SL + + E R +RWL+ L YD + Y G NVV DA+SR Sbjct: 954 KHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISR 1008 Score = 148 bits (371), Expect(2) = 9e-038 Identities = 77/204 (37%), Positives = 114/204 (55%) Frame = -3 Query: 50064 LYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 +Y+W ++ I +++ C CQ +K + GLLQ + I +W I+MDF+TGLP T Sbjct: 1125 IYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTS 1184 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + I V++DR +K AHF+ R T A + L R I HG P +I SDR + T + Sbjct: 1185 NNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTAD 1244 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 ++ K LG + +S+ HPQTDG+SERTIQTL +LRA +W +LP IEF Y Sbjct: 1245 KYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVY 1304 Query: 49524 NNHYHSSIQMAPYEALYGRKCRSP 49453 N+ ++ +P+E G +P Sbjct: 1305 NSTPTRTLGKSPFEIDLGYLPNTP 1328 Score = 87.0 bits (212), Expect = 2e-014 Identities = 66/239 (27%), Positives = 108/239 (44%), Gaps = 2/239 (0%) Frame = +2 Query: 10118 DGVLKYQERLCVPNMDGHQDLIMEKSHS-TTFSFDSGSIKMYRLLREVYTLKGLKKDIVK 10294 D ++ YQ+RL VP Q+ +M H T F G + +Y L+ I++ Sbjct: 1080 DEMIYYQDRLVVPIKQ--QNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQ 1137 Query: 10295 FVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRL 10474 ++ Q +K RL GL + + + +W I+MDF+ + N I V+VDR Sbjct: 1138 YIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRF 1197 Query: 10475 TKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKL 10654 +K +HF+ T A L + + HGF I S+R TA ++ K G K Sbjct: 1198 SKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKS 1257 Query: 10655 N*VLL-FILKEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPY 10831 + + + TI+TL +LRA NW +P IE+ YN++ ++ +P+ Sbjct: 1258 TMSSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPF 1317 Query: 10832 E 10834 E Sbjct: 1318 E 1318 Score = 53.1 bits (125), Expect(2) = 2e-013 Identities = 38/126 (30%), Positives = 56/126 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ F M F+ F +S + E+H L VL+ L+N+ VK K Sbjct: 725 APSTFARYMADTFRDLR--FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKK 782 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 +F + FLG+ I + I + K + FP P K FL + YYRRF+ S Sbjct: 783 CKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCS 842 Query: 9418 SISSPL 9435 I+ P+ Sbjct: 843 KIAQPI 848 Score = 50.8 bits (119), Expect(2) = 2e-013 Identities = 29/100 (29%), Positives = 45/100 (45%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + D FI + SP + V+ + KK R+C+DY N T +PL RI Sbjct: 619 LLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGN 678 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 ++L SG H++ + D KT F+ G Y + V+ Sbjct: 679 AQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVM 718 Score = 37.1 bits (84), Expect(2) = 9e-038 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Frame = -1 Query: 49370 KKDY*HPRVDRSHADN-RR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIV 49194 K+ H +++ +N RR L IGD V + + K+ Y+GP+++V Sbjct: 1358 KEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVH---RDAYFKKGAYMKVQQIYVGPFRVV 1414 Query: 49193 RWIGKVAYELDLPSDLEVVHPVFHVSMLRKCIGDP 49089 + I AYELDL S + H V +V L+K + P Sbjct: 1415 KKINDNAYELDLNSH-KKKHRVINVQFLKKFVYRP 1448 >emb|CAA86713.1| (Z46728) YI9910.15, incomplete TY3-2 orfB, len: >1099, CAI: 0.13 [Saccharomyces cerevisiae] Length = 1099 Score = 249 bits (629), Expect = 3e-063 Identities = 146/408 (35%), Positives = 226/408 (54%), Gaps = 7/408 (1%) Frame = -2 Query: 51667 IPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKV 51488 + PY + +E+ + ++ LL+ FI PS SP +PV+ V KKDG+ ++ ++Y+ LNK Sbjct: 348 LQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKA 407 Query: 51487 TVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVL 51308 T+ + +PLPRID+L ++ A+ F+ +DL S YH++ + D KTAF T G Y++ V+ Sbjct: 408 TISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVM 467 Query: 51307 SFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKL 51128 FG+ NA + F M F+ FV V++DDIL++S S EEH HL TVL L+++ L Sbjct: 468 PFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENL 525 Query: 51127 YAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRR 50948 KC+F FLG+ IG I K A++ + P T + + FL + YYRR Sbjct: 526 IVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRR 585 Query: 50947 FVEKFALISAPL-IRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD 50771 F+ + I+ P+ + + K+ WT +++ LK L +P L Y + D Sbjct: 586 FIPNCSKIAQPIQLFICDKSQ---WTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTD 642 Query: 50770 TSGVGLGCVLMQHGK------VIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYG 50609 S G+G VL + V+ Y S+ L + NYP +L+L ++ AL +R+ L+G Sbjct: 643 ASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHG 702 Query: 50608 FHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 H + TDH SL + + E R +RWL+ L YD + Y G NVV DA+SR Sbjct: 703 KHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISR 757 Score = 150 bits (375), Expect = 2e-033 Identities = 77/204 (37%), Positives = 115/204 (55%) Frame = -3 Query: 50064 LYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 +Y+W ++ I +++ C CQ +K + GLLQ + I +W I+MDF+TGLP T Sbjct: 874 IYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTS 933 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + I V++DR +K AHF+ R T A + L R I HG P +I SDR + T + Sbjct: 934 NNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTAD 993 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 ++ K LG + +S+ HPQTDG+SERTIQTL +LRA + +W +LP IEF Y Sbjct: 994 KYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVY 1053 Query: 49524 NNHYHSSIQMAPYEALYGRKCRSP 49453 N+ ++ +P+E G +P Sbjct: 1054 NSTPTRTLGKSPFEIDLGYLPNTP 1077 Score = 88.5 bits (216), Expect = 8e-015 Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 2/239 (0%) Frame = +2 Query: 10118 DGVLKYQERLCVPNMDGHQDLIMEKSHS-TTFSFDSGSIKMYRLLREVYTLKGLKKDIVK 10294 D ++ YQ+RL VP Q+ +M H T F G + +Y L+ I++ Sbjct: 829 DEMIYYQDRLVVPIKQ--QNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQ 886 Query: 10295 FVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRL 10474 ++ Q +K RL GL + + + +W I+MDF+ + N I V+VDR Sbjct: 887 YIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRF 946 Query: 10475 TKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKL 10654 +K +HF+ T A L + + HGF I S+R TA ++ K G K Sbjct: 947 SKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKS 1006 Query: 10655 N*VLL-FILKEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPY 10831 + + + TI+TL +LRA V NW +P IE+ YN++ ++ +P+ Sbjct: 1007 TMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPF 1066 Query: 10832 E 10834 E Sbjct: 1067 E 1067 Score = 53.1 bits (125), Expect(2) = 2e-013 Identities = 38/126 (30%), Positives = 56/126 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ F M F+ F +S + E+H L VL+ L+N+ VK K Sbjct: 474 APSTFARYMADTFRDLR--FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKK 531 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 +F + FLG+ I + I + K + FP P K FL + YYRRF+ S Sbjct: 532 CKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCS 591 Query: 9418 SISSPL 9435 I+ P+ Sbjct: 592 KIAQPI 597 Score = 50.8 bits (119), Expect(2) = 2e-013 Identities = 29/100 (29%), Positives = 45/100 (45%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + D FI + SP + V+ + KK R+C+DY N T +PL RI Sbjct: 368 LLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGN 427 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 ++L SG H++ + D KT F+ G Y + V+ Sbjct: 428 AQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVM 467 >gb|AAA35184.1| (M23367) has homology to retroviral pol genes; ORF2 TYB3-2 (5' end of coding region not precisely determined) [Saccharomyces cerevisiae] Length = 1221 Score = 249 bits (629), Expect = 3e-063 Identities = 146/408 (35%), Positives = 226/408 (54%), Gaps = 7/408 (1%) Frame = -2 Query: 51667 IPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKV 51488 + PY + +E+ + ++ LL+ FI PS SP +PV+ V KKDG+ ++ ++Y+ LNK Sbjct: 348 LQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKA 407 Query: 51487 TVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVL 51308 T+ + +PLPRID+L ++ A+ F+ +DL S YH++ + D KTAF T G Y++ V+ Sbjct: 408 TISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVM 467 Query: 51307 SFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKL 51128 FG+ NA + F M F+ FV V++DDIL++S S EEH HL TVL L+++ L Sbjct: 468 PFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENL 525 Query: 51127 YAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRR 50948 KC+F FLG+ IG I K A++ + P T + + FL + YYRR Sbjct: 526 IVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRR 585 Query: 50947 FVEKFALISAPL-IRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD 50771 F+ + I+ P+ + + K+ WT +++ LK L +P L Y + D Sbjct: 586 FIPNCSKIAQPIQLFICDKSQ---WTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTD 642 Query: 50770 TSGVGLGCVLMQHGK------VIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYG 50609 S G+G VL + V+ Y S+ L + NYP +L+L ++ AL +R+ L+G Sbjct: 643 ASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHG 702 Query: 50608 FHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 H + TDH SL + + E R +RWL+ L YD + Y G NVV DA+SR Sbjct: 703 KHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISR 757 Score = 150 bits (375), Expect(2) = 2e-037 Identities = 77/204 (37%), Positives = 115/204 (55%) Frame = -3 Query: 50064 LYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 +Y+W ++ I +++ C CQ +K + GLLQ + I +W I+MDF+TGLP T Sbjct: 874 IYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTS 933 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + I V++DR +K AHF+ R T A + L R I HG P +I SDR + T + Sbjct: 934 NNLNMILVVVDRFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTAD 993 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 ++ K LG + +S+ HPQTDG+SERTIQTL +LRA + +W +LP IEF Y Sbjct: 994 KYQELTKRLGIKSTMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVY 1053 Query: 49524 NNHYHSSIQMAPYEALYGRKCRSP 49453 N+ ++ +P+E G +P Sbjct: 1054 NSTPTRTLGKSPFEIDLGYLPNTP 1077 Score = 88.5 bits (216), Expect = 8e-015 Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 2/239 (0%) Frame = +2 Query: 10118 DGVLKYQERLCVPNMDGHQDLIMEKSHS-TTFSFDSGSIKMYRLLREVYTLKGLKKDIVK 10294 D ++ YQ+RL VP Q+ +M H T F G + +Y L+ I++ Sbjct: 829 DEMIYYQDRLVVPIKQ--QNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQ 886 Query: 10295 FVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRL 10474 ++ Q +K RL GL + + + +W I+MDF+ + N I V+VDR Sbjct: 887 YIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRF 946 Query: 10475 TKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKL 10654 +K +HF+ T A L + + HGF I S+R TA ++ K G K Sbjct: 947 SKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKS 1006 Query: 10655 N*VLL-FILKEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPY 10831 + + + TI+TL +LRA V NW +P IE+ YN++ ++ +P+ Sbjct: 1007 TMSSANHPQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPF 1066 Query: 10832 E 10834 E Sbjct: 1067 E 1067 Score = 53.1 bits (125), Expect(2) = 2e-013 Identities = 38/126 (30%), Positives = 56/126 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ F M F+ F +S + E+H L VL+ L+N+ VK K Sbjct: 474 APSTFARYMADTFRDLR--FVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKK 531 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 +F + FLG+ I + I + K + FP P K FL + YYRRF+ S Sbjct: 532 CKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCS 591 Query: 9418 SISSPL 9435 I+ P+ Sbjct: 592 KIAQPI 597 Score = 50.8 bits (119), Expect(2) = 2e-013 Identities = 29/100 (29%), Positives = 45/100 (45%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 + D FI + SP + V+ + KK R+C+DY N T +PL RI Sbjct: 368 LLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGN 427 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 ++L SG H++ + D KT F+ G Y + V+ Sbjct: 428 AQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVM 467 Score = 34.4 bits (77), Expect(2) = 2e-037 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 1/114 (0%) Frame = -1 Query: 49370 KKDY*HPRVDRSHADN-RR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIV 49194 K+ H +++ +N RR L IGD V + + K+ Y+GP+++V Sbjct: 1107 KEQLEHAQIEMETNNNQRRKPLLLNIGDHVLVH---RDAYFKKGAYMKVQQIYVGPFRVV 1163 Query: 49193 RWIGKVAYELDLPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEK 49029 + I AYELDL S + H V +V L+ +R I+ + E K Sbjct: 1164 KKINDNAYELDLNSH-KKKHRVINVQFLKSLYTVQTRTQRINQSAPLRELREHTK 1217 >gb|AAA50456.1| (U15406) gag, pol and env protein precursor [Caenorhabditis elegans] Length = 2272 Score = 248 bits (626), Expect = 7e-063 Identities = 149/444 (33%), Positives = 237/444 (52%), Gaps = 12/444 (2%) Frame = -2 Query: 51775 VVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELK-ELKEQLRDLLE 51599 V+++F DVF E I++ +PI P R P LK E+++ ++ +L Sbjct: 995 VIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKP-RPIPLALKPEIRKMIQKMLN 1053 Query: 51598 KGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKC 51419 + IR S SPW +PV+ V+KKDGS++M I+Y+++NKV N +PLP I+ L G K Sbjct: 1054 QKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKL 1113 Query: 51418 FSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFL 51239 ++ D+ + + ++ + E TAF +++ VL FG+ + A+F M + L Sbjct: 1114 YTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLL 1173 Query: 51238 DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGA 51059 + V+VDD+L+ S+ E+H ++ L ++ + SKC + +LGH + Sbjct: 1174 GVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTL 1233 Query: 51058 DGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF* 50879 DG+ K + +K ++RPT E++SFL L YYR+F+ FA I++ L L + Sbjct: 1234 DGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWI 1293 Query: 50878 WTNACERSF*LLKDKLTIAPFLNLPE------GPDGYVIYCDTSGVGLGCVLMQHG---- 50729 W E +F LK + P L P+ G ++IY D S G+G VL Q G Sbjct: 1294 WEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQ 1353 Query: 50728 -KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQK 50552 IA+AS+ L E Y DL+ ++ AL+ ++ +YG + ++TDHK L + K Sbjct: 1354 QHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGS 1413 Query: 50551 ELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 L R RW + ++DV I+Y GKAN V DALSR Sbjct: 1414 PLADRLWRWSIEILEFDVKIVYLAGKANAVADALSR 1449 Score = 68.7 bits (165), Expect = 7e-009 Identities = 45/152 (29%), Positives = 70/152 (45%) Frame = +1 Query: 9055 IAPAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFS 9234 I+PA F M + L + S + E H D++ L +R ++ S Sbjct: 1156 ISPALFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRAS 1215 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K K V +LGH ++ +G+ + K + F RP K + SFL L YYR+F+ F Sbjct: 1216 KCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNF 1275 Query: 9415 SSISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 + I+S LT + KV + + E F+EL K Sbjct: 1276 AQIASSLTSLISAKVAWIWEKEQEIAFQELKK 1307 Score = 60.1 bits (143), Expect = 3e-006 Identities = 62/274 (22%), Positives = 120/274 (43%), Gaps = 12/274 (4%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 ++R ++ E H + + G KM+ + ++W M+ + V C+ C +H K Sbjct: 1549 KIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCAN-DHSK 1607 Query: 49974 SGGLLQEIEIPTWKWEMINMDFI-TGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAE 49798 L + T+ E++ D + GL + I IID TK +P+ AE Sbjct: 1608 LTSSLTPYRM-TFPLEIVACDLMDVGLSVQGNR--YILTIIDLFTKYGTAVPIPDK-KAE 1663 Query: 49797 DYVRLYVREIVRLHG-VPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSE 49621 ++ +V G +P +++D+G +F + F L + + ++ + +G E Sbjct: 1664 TVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVE 1723 Query: 49620 RTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP---- 49453 R +T+ +++ WDD + +AYNN H + P ++GR P Sbjct: 1724 RFNKTIMHIMKKKTA-VPMEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEMS 1782 Query: 49452 ------IGWFDVGETKLIGPDMIQQVVDKVKLIQERLLASQSR*KS 49333 I + D+ E K + + Q+++ K+ +E + Q KS Sbjct: 1783 GEDAVGINYADMDEYKHL---LTQELLKVQKIAKEHAMREQESYKS 1825 Score = 39.9 bits (91), Expect = 3.5 Identities = 18/51 (35%), Positives = 30/51 (58%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRI 8893 M ++ I ++ SPW + V+ ++KK +R+CIDY + N V +PL I Sbjct: 1051 MLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNI 1101 Score = 34.4 bits (77), Expect(2) = 0.47 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL 9749 I + SK L E Y D+E +++F+L+ + +YG + +FTD+K L Sbjct: 1357 IAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPL 1406 Score = 27.0 bits (58), Expect(2) = 0.47 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +2 Query: 9791 RWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEE 9919 RW ++D+ I+Y GKAN V +L R GC E+E+ Sbjct: 1421 RWSIEILEFDVKIVYLAGKANAVADALSR--GGCPPNELEEEQ 1461 >gb|AAA35339.1| (M38526) Tf1 protein [Schizosaccharomyces pombe] Length = 1330 Score = 246 bits (621), Expect = 3e-062 Identities = 154/523 (29%), Positives = 270/523 (51%), Gaps = 12/523 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 +EF +++ + + I Y + P +++ + +++ L+ G IR S + PV+FV KK+ Sbjct: 397 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 456 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G+L+M ++YK LNK N YPLP I+ L ++QG+ F+K+DL+S+YH +RVR+ D K Sbjct: 457 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 516 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 AF G +++ V+ +G++ A A F +N + + V+ ++DDIL++S+SE EH Sbjct: 517 LAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHV 576 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 H++ VL+ L++ L +KCEF + + F+G+ I G + I+ V W +P Sbjct: 577 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNR 636 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 E+R FL Y R+F+ K + ++ PL +L +K ++ WT ++ +K L P L Sbjct: 637 KELRQFLGSVNYLRKFIPKTSQLTHPLNKLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 696 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + ++ D S V +G VL Q + Y S ++ K + NY D ++ + Sbjct: 697 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 756 Query: 50647 VHALKIWRHYLYGF--HVDIYTDHKSL--QYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 + +LK WRHYL I TDH++L + + + R RW L+D++ +I Y Sbjct: 757 IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 816 Query: 50479 GKANVVVDALSR---KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAK 50309 G AN + DALSR ++ D + V I + + + + Sbjct: 817 GSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLN 876 Query: 50308 SSIIDEVKRHQYKDPILAQYRDAALQKENTHLRIHLTECYNMKVDCVHPILQATT 50144 + + Q KD +L +D L +T L + + Y+ + +HP ++ T Sbjct: 877 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLT 931 Score = 148 bits (370), Expect = 7e-033 Identities = 76/227 (33%), Positives = 123/227 (53%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 +L R ++ + H I+PG + + + + W G++K I E+V C CQ K + K Sbjct: 907 QLTRTIIKKYHEEGKLIHPGIELLTNTILRRFTWKGLRKQIQEYVQNCHTCQINKSRNHK 966 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 G L I P WE ++MDFIT LP + +++ V++DR +K A LP + +AE Sbjct: 967 PYGPLHPIPPPERPWESLSMDFITALPESSGY-NALLVVVDRFSKMAILLPCTKSITAEQ 1025 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 R++ + ++ G P II+D FT+ W+ F + S + PQTDG++ERT Sbjct: 1026 TARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERT 1085 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALY 49474 QT+E +LR +W DH+ L++ +YNN HS+ QM P+E ++ Sbjct: 1086 NQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1132 Score = 110 bits (272), Expect(2) = 2e-023 Identities = 95/356 (26%), Positives = 166/356 (45%), Gaps = 6/356 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 N + RW +D++ I Y PG AN + +L R+ I K+ E+ + + + Sbjct: 795 NKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQIS-- 852 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL-K 10132 I D + +V ++ L++ + N +++RV Q DG+L Sbjct: 853 --ITDDFKNQVVTEYTNDTKLLNLL---------------NNEDKRVEENIQLKDGLLIN 895 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 ++++ +PN I++K H G + + +T KGL+K I ++V Sbjct: 896 SKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNTILRRFTWKGLRKQIQEYVQNCH 955 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHF 10492 Q K + + G I P WE ++MDFI S +N++ V+VDR +K + Sbjct: 956 TCQINKSRNHKPYGPLHPIPPPERPWESLSMDFITALPESSG-YNALLVVVDRFSKMAIL 1014 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 L + + AE A+++ Q+V G II++ FT+Q WK F K N V+ F Sbjct: 1015 LPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDF----AHKYNFVMKF 1070 Query: 10673 ILK-----EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEA 10837 L + + + T +T+E +LR W D++ L++ SYNN+ HS+ QM P+E Sbjct: 1071 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1130 Query: 10838 LY 10843 ++ Sbjct: 1131 VH 1132 Score = 53.1 bits (125), Expect(2) = 2e-009 Identities = 33/129 (25%), Positives = 60/129 (45%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F ++ + + +S ++ +H ++ VLQ L+N + +K Sbjct: 538 APAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAK 597 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF V F+G+ IS +G +E I+ + +P K + FL Y R+F+ + S Sbjct: 598 CEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTS 657 Query: 9418 SISSPLTKI 9444 ++ PL K+ Sbjct: 658 QLTHPLNKL 666 Score = 45.3 bits (105), Expect = 0.081 Identities = 27/68 (39%), Positives = 39/68 (56%), Gaps = 1/68 (1%) Frame = -1 Query: 49307 EFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLEVVHP- 49131 EFQ GD V +K + L + KL+P + GP+ +++ G YELDLP ++ + P Sbjct: 1188 EFQPGDLVMVKRTKTGF---LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFPS 1244 Query: 49130 VFHVSMLRK 49104 FHVS L K Sbjct: 1245 TFHVSHLEK 1253 Score = 37.5 bits (85), Expect(2) = 2e-009 Identities = 24/83 (28%), Positives = 38/83 (44%) Frame = +2 Query: 8792 VLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMK 8971 V+F+ KK+ LR+ +DY N YPL I ++L+S H ++ Sbjct: 449 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 508 Query: 8972 VRECDVPKTNFIKRYGHYLFLVI 9040 VR+ D K F G + +LV+ Sbjct: 509 VRKGDEHKLAFRCPRGVFEYLVM 531 Score = 27.8 bits (60), Expect(2) = 2e-023 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL 9749 + Y S + + NY D E+ +++ SLK W H+L I TD+++L Sbjct: 732 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNL 783 >emb|CAB58169.1| (AL035248) tf2-type transposon [Schizosaccharomyces pombe] Length = 1214 Score = 245 bits (619), Expect = 4e-062 Identities = 154/523 (29%), Positives = 269/523 (50%), Gaps = 12/523 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 +EF +++ + + I Y + P +++ + +++ L+ G IR S + PV+FV KK+ Sbjct: 281 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 340 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G+L+M ++YK LNK N YPLP I+ L ++QG+ F+K+DL+S+YH +RVR+ D K Sbjct: 341 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 400 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 AF G +++ V+ +G++ A A F +N + + V+ ++DDIL++S+SE EH Sbjct: 401 LAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHV 460 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 H++ VL+ L++ L +KCEF + + F+G+ I G + I+ V W +P Sbjct: 461 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNR 520 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 E+R FL Y R+F+ K + ++ PL L +K ++ WT ++ +K L P L Sbjct: 521 KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 580 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + ++ D S V +G VL Q + Y S ++ K + NY D ++ + Sbjct: 581 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 640 Query: 50647 VHALKIWRHYLYGF--HVDIYTDHKSL--QYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 + +LK WRHYL I TDH++L + + + R RW L+D++ +I Y Sbjct: 641 IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 700 Query: 50479 GKANVVVDALSR---KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAK 50309 G AN + DALSR ++ D + V I + + + + Sbjct: 701 GSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLN 760 Query: 50308 SSIIDEVKRHQYKDPILAQYRDAALQKENTHLRIHLTECYNMKVDCVHPILQATT 50144 + + Q KD +L +D L +T L + + Y+ + +HP ++ T Sbjct: 761 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLT 815 Score = 146 bits (364), Expect = 3e-032 Identities = 75/227 (33%), Positives = 124/227 (54%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 +L R ++ + H I+PG + + + + W G++K I E+V C CQ K + K Sbjct: 791 QLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHK 850 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 G LQ I WE ++MDFIT LP + ++++V++DR +K A +P + +AE Sbjct: 851 PYGPLQPIPPSERPWESLSMDFITALPESSGY-NALFVVVDRFSKMAILVPCTKSITAEQ 909 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 R++ + ++ G P II+D FT+ W+ F + S + PQTDG++ERT Sbjct: 910 TARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERT 969 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALY 49474 QT+E +LR +W DH+ L++ +YNN HS+ QM P+E ++ Sbjct: 970 NQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1016 Score = 109 bits (270), Expect(2) = 3e-023 Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 6/356 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 N + RW +D++ I Y PG AN + +L R+ I K+ E+ + + + Sbjct: 679 NKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQIS-- 736 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL-K 10132 I D + +V ++ L++ + N +++RV Q DG+L Sbjct: 737 --ITDDFKNQVVTEYTNDTKLLNLL---------------NNEDKRVEENIQLKDGLLIN 779 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 ++++ +PN I++K H G + ++ +T KG++K I ++V Sbjct: 780 SKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCH 839 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHF 10492 Q K + + G + I WE ++MDFI S +N++FV+VDR +K + Sbjct: 840 TCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSG-YNALFVVVDRFSKMAIL 898 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + + + AE A+++ Q+V G II++ FT+Q WK F K N V+ F Sbjct: 899 VPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDF----AHKYNFVMKF 954 Query: 10673 IL-----KEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEA 10837 L + + + T +T+E +LR W D++ L++ SYNN+ HS+ QM P+E Sbjct: 955 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1014 Query: 10838 LY 10843 ++ Sbjct: 1015 VH 1016 Score = 51.2 bits (120), Expect(2) = 6e-009 Identities = 32/129 (24%), Positives = 59/129 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F ++ + + +S ++ +H ++ VLQ L+N + +K Sbjct: 422 APAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAK 481 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF V F+G+ IS +G +E I+ + +P K + FL Y R+F+ + S Sbjct: 482 CEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTS 541 Query: 9418 SISSPLTKI 9444 ++ PL + Sbjct: 542 QLTHPLNNL 550 Score = 43.0 bits (99), Expect = 0.41 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = -1 Query: 49307 EFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLE-VVHP 49131 EFQ GD V +K + L + KL+P + GP+ +++ G YELDLP ++ + Sbjct: 1072 EFQPGDLVMVKRTKTGF---LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSS 1128 Query: 49130 VFHVSMLRK 49104 FHVS L K Sbjct: 1129 TFHVSHLEK 1137 Score = 37.5 bits (85), Expect(2) = 6e-009 Identities = 24/83 (28%), Positives = 38/83 (44%) Frame = +2 Query: 8792 VLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMK 8971 V+F+ KK+ LR+ +DY N YPL I ++L+S H ++ Sbjct: 333 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 392 Query: 8972 VRECDVPKTNFIKRYGHYLFLVI 9040 VR+ D K F G + +LV+ Sbjct: 393 VRKGDEHKLAFRCPRGVFEYLVM 415 Score = 27.8 bits (60), Expect(2) = 3e-023 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL 9749 + Y S + + NY D E+ +++ SLK W H+L I TD+++L Sbjct: 616 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNL 667 >emb|CAB11682.1| (Z98978) retrotransposable element tf2 155 kd protein [Schizosaccharomyces pombe] Length = 1333 Score = 245 bits (619), Expect = 4e-062 Identities = 154/523 (29%), Positives = 269/523 (50%), Gaps = 12/523 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 +EF +++ + + I Y + P +++ + +++ L+ G IR S + PV+FV KK+ Sbjct: 400 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G+L+M ++YK LNK N YPLP I+ L ++QG+ F+K+DL+S+YH +RVR+ D K Sbjct: 460 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 519 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 AF G +++ V+ +G++ A A F +N + + V+ ++DDIL++S+SE EH Sbjct: 520 LAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHV 579 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 H++ VL+ L++ L +KCEF + + F+G+ I G + I+ V W +P Sbjct: 580 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNR 639 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 E+R FL Y R+F+ K + ++ PL L +K ++ WT ++ +K L P L Sbjct: 640 KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + ++ D S V +G VL Q + Y S ++ K + NY D ++ + Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759 Query: 50647 VHALKIWRHYLYGF--HVDIYTDHKSL--QYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 + +LK WRHYL I TDH++L + + + R RW L+D++ +I Y Sbjct: 760 IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819 Query: 50479 GKANVVVDALSR---KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAK 50309 G AN + DALSR ++ D + V I + + + + Sbjct: 820 GSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLN 879 Query: 50308 SSIIDEVKRHQYKDPILAQYRDAALQKENTHLRIHLTECYNMKVDCVHPILQATT 50144 + + Q KD +L +D L +T L + + Y+ + +HP ++ T Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLT 934 Score = 146 bits (364), Expect = 3e-032 Identities = 75/227 (33%), Positives = 124/227 (54%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 +L R ++ + H I+PG + + + + W G++K I E+V C CQ K + K Sbjct: 910 QLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHK 969 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 G LQ I WE ++MDFIT LP + ++++V++DR +K A +P + +AE Sbjct: 970 PYGPLQPIPPSERPWESLSMDFITALPESSGY-NALFVVVDRFSKMAILVPCTKSITAEQ 1028 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 R++ + ++ G P II+D FT+ W+ F + S + PQTDG++ERT Sbjct: 1029 TARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERT 1088 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALY 49474 QT+E +LR +W DH+ L++ +YNN HS+ QM P+E ++ Sbjct: 1089 NQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135 Score = 109 bits (270), Expect(2) = 3e-023 Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 6/356 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 N + RW +D++ I Y PG AN + +L R+ I K+ E+ + + + Sbjct: 798 NKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQIS-- 855 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL-K 10132 I D + +V ++ L++ + N +++RV Q DG+L Sbjct: 856 --ITDDFKNQVVTEYTNDTKLLNLL---------------NNEDKRVEENIQLKDGLLIN 898 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 ++++ +PN I++K H G + ++ +T KG++K I ++V Sbjct: 899 SKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCH 958 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHF 10492 Q K + + G + I WE ++MDFI S +N++FV+VDR +K + Sbjct: 959 TCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSG-YNALFVVVDRFSKMAIL 1017 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + + + AE A+++ Q+V G II++ FT+Q WK F K N V+ F Sbjct: 1018 VPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDF----AHKYNFVMKF 1073 Query: 10673 IL-----KEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEA 10837 L + + + T +T+E +LR W D++ L++ SYNN+ HS+ QM P+E Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133 Query: 10838 LY 10843 ++ Sbjct: 1134 VH 1135 Score = 51.2 bits (120), Expect(2) = 6e-009 Identities = 32/129 (24%), Positives = 59/129 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F ++ + + +S ++ +H ++ VLQ L+N + +K Sbjct: 541 APAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAK 600 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF V F+G+ IS +G +E I+ + +P K + FL Y R+F+ + S Sbjct: 601 CEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTS 660 Query: 9418 SISSPLTKI 9444 ++ PL + Sbjct: 661 QLTHPLNNL 669 Score = 43.0 bits (99), Expect = 0.41 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = -1 Query: 49307 EFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLE-VVHP 49131 EFQ GD V +K + L + KL+P + GP+ +++ G YELDLP ++ + Sbjct: 1191 EFQPGDLVMVKRTKTGF---LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSS 1247 Query: 49130 VFHVSMLRK 49104 FHVS L K Sbjct: 1248 TFHVSHLEK 1256 Score = 37.5 bits (85), Expect(2) = 6e-009 Identities = 24/83 (28%), Positives = 38/83 (44%) Frame = +2 Query: 8792 VLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMK 8971 V+F+ KK+ LR+ +DY N YPL I ++L+S H ++ Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511 Query: 8972 VRECDVPKTNFIKRYGHYLFLVI 9040 VR+ D K F G + +LV+ Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVM 534 Score = 27.8 bits (60), Expect(2) = 3e-023 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL 9749 + Y S + + NY D E+ +++ SLK W H+L I TD+++L Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNL 786 >emb|CAA93236.1| (Z69240) retrotransposon Tf2p [Schizosaccharomyces pombe] Length = 1333 Score = 245 bits (619), Expect = 4e-062 Identities = 154/523 (29%), Positives = 269/523 (50%), Gaps = 12/523 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 +EF +++ + + I Y + P +++ + +++ L+ G IR S + PV+FV KK+ Sbjct: 400 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G+L+M ++YK LNK N YPLP I+ L ++QG+ F+K+DL+S+YH +RVR+ D K Sbjct: 460 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 519 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 AF G +++ V+ +G++ A A F +N + + V+ ++DDIL++S+SE EH Sbjct: 520 LAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHV 579 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 H++ VL+ L++ L +KCEF + + F+G+ I G + I+ V W +P Sbjct: 580 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNR 639 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 E+R FL Y R+F+ K + ++ PL L +K ++ WT ++ +K L P L Sbjct: 640 KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + ++ D S V +G VL Q + Y S ++ K + NY D ++ + Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759 Query: 50647 VHALKIWRHYLYGF--HVDIYTDHKSL--QYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 + +LK WRHYL I TDH++L + + + R RW L+D++ +I Y Sbjct: 760 IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819 Query: 50479 GKANVVVDALSR---KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAK 50309 G AN + DALSR ++ D + V I + + + + Sbjct: 820 GSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLN 879 Query: 50308 SSIIDEVKRHQYKDPILAQYRDAALQKENTHLRIHLTECYNMKVDCVHPILQATT 50144 + + Q KD +L +D L +T L + + Y+ + +HP ++ T Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLT 934 Score = 146 bits (364), Expect = 3e-032 Identities = 75/227 (33%), Positives = 124/227 (54%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 +L R ++ + H I+PG + + + + W G++K I E+V C CQ K + K Sbjct: 910 QLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHK 969 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 G LQ I WE ++MDFIT LP + ++++V++DR +K A +P + +AE Sbjct: 970 PYGPLQPIPPSERPWESLSMDFITALPESSGY-NALFVVVDRFSKMAILVPCTKSITAEQ 1028 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 R++ + ++ G P II+D FT+ W+ F + S + PQTDG++ERT Sbjct: 1029 TARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERT 1088 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALY 49474 QT+E +LR +W DH+ L++ +YNN HS+ QM P+E ++ Sbjct: 1089 NQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135 Score = 109 bits (270), Expect(2) = 3e-023 Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 6/356 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 N + RW +D++ I Y PG AN + +L R+ I K+ E+ + + + Sbjct: 798 NKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQIS-- 855 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL-K 10132 I D + +V ++ L++ + N +++RV Q DG+L Sbjct: 856 --ITDDFKNQVVTEYTNDTKLLNLL---------------NNEDKRVEENIQLKDGLLIN 898 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 ++++ +PN I++K H G + ++ +T KG++K I ++V Sbjct: 899 SKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCH 958 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHF 10492 Q K + + G + I WE ++MDFI S +N++FV+VDR +K + Sbjct: 959 TCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSG-YNALFVVVDRFSKMAIL 1017 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + + + AE A+++ Q+V G II++ FT+Q WK F K N V+ F Sbjct: 1018 VPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDF----AHKYNFVMKF 1073 Query: 10673 IL-----KEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEA 10837 L + + + T +T+E +LR W D++ L++ SYNN+ HS+ QM P+E Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133 Query: 10838 LY 10843 ++ Sbjct: 1134 VH 1135 Score = 51.2 bits (120), Expect(2) = 6e-009 Identities = 32/129 (24%), Positives = 59/129 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F ++ + + +S ++ +H ++ VLQ L+N + +K Sbjct: 541 APAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAK 600 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF V F+G+ IS +G +E I+ + +P K + FL Y R+F+ + S Sbjct: 601 CEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTS 660 Query: 9418 SISSPLTKI 9444 ++ PL + Sbjct: 661 QLTHPLNNL 669 Score = 43.0 bits (99), Expect = 0.41 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = -1 Query: 49307 EFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLE-VVHP 49131 EFQ GD V +K + L + KL+P + GP+ +++ G YELDLP ++ + Sbjct: 1191 EFQPGDLVMVKRTKTGF---LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSS 1247 Query: 49130 VFHVSMLRK 49104 FHVS L K Sbjct: 1248 TFHVSHLEK 1256 Score = 37.5 bits (85), Expect(2) = 6e-009 Identities = 24/83 (28%), Positives = 38/83 (44%) Frame = +2 Query: 8792 VLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMK 8971 V+F+ KK+ LR+ +DY N YPL I ++L+S H ++ Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511 Query: 8972 VRECDVPKTNFIKRYGHYLFLVI 9040 VR+ D K F G + +LV+ Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVM 534 Score = 27.8 bits (60), Expect(2) = 3e-023 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL 9749 + Y S + + NY D E+ +++ SLK W H+L I TD+++L Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNL 786 >emb|CAB83007.1| (AL162531) retrotransposble element; tf2 type transposon [Schizosaccharomyces pombe] Length = 1333 Score = 245 bits (619), Expect = 4e-062 Identities = 154/523 (29%), Positives = 269/523 (50%), Gaps = 12/523 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 +EF +++ + + I Y + P +++ + +++ L+ G IR S + PV+FV KK+ Sbjct: 400 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G+L+M ++YK LNK N YPLP I+ L ++QG+ F+K+DL+S+YH +RVR+ D K Sbjct: 460 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 519 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 AF G +++ V+ +G++ A A F +N + + V+ ++DDIL++S+SE EH Sbjct: 520 LAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHV 579 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 H++ VL+ L++ L +KCEF + + F+G+ I G + I+ V W +P Sbjct: 580 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNR 639 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 E+R FL Y R+F+ K + ++ PL L +K ++ WT ++ +K L P L Sbjct: 640 KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + ++ D S V +G VL Q + Y S ++ K + NY D ++ + Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759 Query: 50647 VHALKIWRHYLYGF--HVDIYTDHKSL--QYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 + +LK WRHYL I TDH++L + + + R RW L+D++ +I Y Sbjct: 760 IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819 Query: 50479 GKANVVVDALSR---KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAK 50309 G AN + DALSR ++ D + V I + + + + Sbjct: 820 GSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLN 879 Query: 50308 SSIIDEVKRHQYKDPILAQYRDAALQKENTHLRIHLTECYNMKVDCVHPILQATT 50144 + + Q KD +L +D L +T L + + Y+ + +HP ++ T Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLT 934 Score = 146 bits (364), Expect = 3e-032 Identities = 75/227 (33%), Positives = 124/227 (54%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 +L R ++ + H I+PG + + + + W G++K I E+V C CQ K + K Sbjct: 910 QLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHK 969 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 G LQ I WE ++MDFIT LP + ++++V++DR +K A +P + +AE Sbjct: 970 PYGPLQPIPPSERPWESLSMDFITALPESSGY-NALFVVVDRFSKMAILVPCTKSITAEQ 1028 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 R++ + ++ G P II+D FT+ W+ F + S + PQTDG++ERT Sbjct: 1029 TARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERT 1088 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALY 49474 QT+E +LR +W DH+ L++ +YNN HS+ QM P+E ++ Sbjct: 1089 NQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135 Score = 109 bits (270), Expect(2) = 3e-023 Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 6/356 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 N + RW +D++ I Y PG AN + +L R+ I K+ E+ + + + Sbjct: 798 NKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQIS-- 855 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL-K 10132 I D + +V ++ L++ + N +++RV Q DG+L Sbjct: 856 --ITDDFKNQVVTEYTNDTKLLNLL---------------NNEDKRVEENIQLKDGLLIN 898 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 ++++ +PN I++K H G + ++ +T KG++K I ++V Sbjct: 899 SKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCH 958 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHF 10492 Q K + + G + I WE ++MDFI S +N++FV+VDR +K + Sbjct: 959 TCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSG-YNALFVVVDRFSKMAIL 1017 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + + + AE A+++ Q+V G II++ FT+Q WK F K N V+ F Sbjct: 1018 VPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDF----AHKYNFVMKF 1073 Query: 10673 IL-----KEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEA 10837 L + + + T +T+E +LR W D++ L++ SYNN+ HS+ QM P+E Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133 Query: 10838 LY 10843 ++ Sbjct: 1134 VH 1135 Score = 51.2 bits (120), Expect(2) = 6e-009 Identities = 32/129 (24%), Positives = 59/129 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F ++ + + +S ++ +H ++ VLQ L+N + +K Sbjct: 541 APAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAK 600 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF V F+G+ IS +G +E I+ + +P K + FL Y R+F+ + S Sbjct: 601 CEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTS 660 Query: 9418 SISSPLTKI 9444 ++ PL + Sbjct: 661 QLTHPLNNL 669 Score = 43.0 bits (99), Expect = 0.41 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = -1 Query: 49307 EFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLE-VVHP 49131 EFQ GD V +K + L + KL+P + GP+ +++ G YELDLP ++ + Sbjct: 1191 EFQPGDLVMVKRTKTGF---LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSS 1247 Query: 49130 VFHVSMLRK 49104 FHVS L K Sbjct: 1248 TFHVSHLEK 1256 Score = 37.5 bits (85), Expect(2) = 6e-009 Identities = 24/83 (28%), Positives = 38/83 (44%) Frame = +2 Query: 8792 VLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMK 8971 V+F+ KK+ LR+ +DY N YPL I ++L+S H ++ Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511 Query: 8972 VRECDVPKTNFIKRYGHYLFLVI 9040 VR+ D K F G + +LV+ Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVM 534 Score = 27.8 bits (60), Expect(2) = 3e-023 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL 9749 + Y S + + NY D E+ +++ SLK W H+L I TD+++L Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNL 786 >emb|CAB57422.1| (AL121764) retrotransposable element tf2 155 kd protein [Schizosaccharomyces pombe] Length = 1333 Score = 245 bits (619), Expect = 4e-062 Identities = 154/523 (29%), Positives = 269/523 (50%), Gaps = 12/523 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 +EF +++ + + I Y + P +++ + +++ L+ G IR S + PV+FV KK+ Sbjct: 400 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G+L+M ++YK LNK N YPLP I+ L ++QG+ F+K+DL+S+YH +RVR+ D K Sbjct: 460 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 519 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 AF G +++ V+ +G++ A A F +N + + V+ ++DDIL++S+SE EH Sbjct: 520 LAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHV 579 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 H++ VL+ L++ L +KCEF + + F+G+ I G + I+ V W +P Sbjct: 580 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNR 639 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 E+R FL Y R+F+ K + ++ PL L +K ++ WT ++ +K L P L Sbjct: 640 KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + ++ D S V +G VL Q + Y S ++ K + NY D ++ + Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759 Query: 50647 VHALKIWRHYLYGF--HVDIYTDHKSL--QYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 + +LK WRHYL I TDH++L + + + R RW L+D++ +I Y Sbjct: 760 IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819 Query: 50479 GKANVVVDALSR---KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAK 50309 G AN + DALSR ++ D + V I + + + + Sbjct: 820 GSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLN 879 Query: 50308 SSIIDEVKRHQYKDPILAQYRDAALQKENTHLRIHLTECYNMKVDCVHPILQATT 50144 + + Q KD +L +D L +T L + + Y+ + +HP ++ T Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLT 934 Score = 146 bits (364), Expect = 3e-032 Identities = 75/227 (33%), Positives = 124/227 (54%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 +L R ++ + H I+PG + + + + W G++K I E+V C CQ K + K Sbjct: 910 QLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHK 969 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 G LQ I WE ++MDFIT LP + ++++V++DR +K A +P + +AE Sbjct: 970 PYGPLQPIPPSERPWESLSMDFITALPESSGY-NALFVVVDRFSKMAILVPCTKSITAEQ 1028 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 R++ + ++ G P II+D FT+ W+ F + S + PQTDG++ERT Sbjct: 1029 TARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERT 1088 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALY 49474 QT+E +LR +W DH+ L++ +YNN HS+ QM P+E ++ Sbjct: 1089 NQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135 Score = 109 bits (270), Expect(2) = 3e-023 Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 6/356 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 N + RW +D++ I Y PG AN + +L R+ I K+ E+ + + + Sbjct: 798 NKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQIS-- 855 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL-K 10132 I D + +V ++ L++ + N +++RV Q DG+L Sbjct: 856 --ITDDFKNQVVTEYTNDTKLLNLL---------------NNEDKRVEENIQLKDGLLIN 898 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 ++++ +PN I++K H G + ++ +T KG++K I ++V Sbjct: 899 SKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCH 958 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHF 10492 Q K + + G + I WE ++MDFI S +N++FV+VDR +K + Sbjct: 959 TCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSG-YNALFVVVDRFSKMAIL 1017 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + + + AE A+++ Q+V G II++ FT+Q WK F K N V+ F Sbjct: 1018 VPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDF----AHKYNFVMKF 1073 Query: 10673 IL-----KEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEA 10837 L + + + T +T+E +LR W D++ L++ SYNN+ HS+ QM P+E Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133 Query: 10838 LY 10843 ++ Sbjct: 1134 VH 1135 Score = 51.2 bits (120), Expect(2) = 6e-009 Identities = 32/129 (24%), Positives = 59/129 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F ++ + + +S ++ +H ++ VLQ L+N + +K Sbjct: 541 APAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAK 600 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF V F+G+ IS +G +E I+ + +P K + FL Y R+F+ + S Sbjct: 601 CEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTS 660 Query: 9418 SISSPLTKI 9444 ++ PL + Sbjct: 661 QLTHPLNNL 669 Score = 43.0 bits (99), Expect = 0.41 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = -1 Query: 49307 EFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLE-VVHP 49131 EFQ GD V +K + L + KL+P + GP+ +++ G YELDLP ++ + Sbjct: 1191 EFQPGDLVMVKRTKTGF---LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSS 1247 Query: 49130 VFHVSMLRK 49104 FHVS L K Sbjct: 1248 TFHVSHLEK 1256 Score = 37.5 bits (85), Expect(2) = 6e-009 Identities = 24/83 (28%), Positives = 38/83 (44%) Frame = +2 Query: 8792 VLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMK 8971 V+F+ KK+ LR+ +DY N YPL I ++L+S H ++ Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511 Query: 8972 VRECDVPKTNFIKRYGHYLFLVI 9040 VR+ D K F G + +LV+ Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVM 534 Score = 27.8 bits (60), Expect(2) = 3e-023 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL 9749 + Y S + + NY D E+ +++ SLK W H+L I TD+++L Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNL 786 >emb|CAB42363.1| (AL049769) retrotransposable element tf2 155 kd protein [Schizosaccharomyces pombe] Length = 1333 Score = 245 bits (619), Expect = 4e-062 Identities = 154/523 (29%), Positives = 269/523 (50%), Gaps = 12/523 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 +EF +++ + + I Y + P +++ + +++ L+ G IR S + PV+FV KK+ Sbjct: 400 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G+L+M ++YK LNK N YPLP I+ L ++QG+ F+K+DL+S+YH +RVR+ D K Sbjct: 460 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 519 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 AF G +++ V+ +G++ A A F +N + + V+ ++DDIL++S+SE EH Sbjct: 520 LAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHV 579 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 H++ VL+ L++ L +KCEF + + F+G+ I G + I+ V W +P Sbjct: 580 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNR 639 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 E+R FL Y R+F+ K + ++ PL L +K ++ WT ++ +K L P L Sbjct: 640 KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + ++ D S V +G VL Q + Y S ++ K + NY D ++ + Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759 Query: 50647 VHALKIWRHYLYGF--HVDIYTDHKSL--QYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 + +LK WRHYL I TDH++L + + + R RW L+D++ +I Y Sbjct: 760 IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819 Query: 50479 GKANVVVDALSR---KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAK 50309 G AN + DALSR ++ D + V I + + + + Sbjct: 820 GSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLN 879 Query: 50308 SSIIDEVKRHQYKDPILAQYRDAALQKENTHLRIHLTECYNMKVDCVHPILQATT 50144 + + Q KD +L +D L +T L + + Y+ + +HP ++ T Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLT 934 Score = 146 bits (364), Expect = 3e-032 Identities = 75/227 (33%), Positives = 124/227 (54%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 +L R ++ + H I+PG + + + + W G++K I E+V C CQ K + K Sbjct: 910 QLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHK 969 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 G LQ I WE ++MDFIT LP + ++++V++DR +K A +P + +AE Sbjct: 970 PYGPLQPIPPSERPWESLSMDFITALPESSGY-NALFVVVDRFSKMAILVPCTKSITAEQ 1028 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 R++ + ++ G P II+D FT+ W+ F + S + PQTDG++ERT Sbjct: 1029 TARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERT 1088 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALY 49474 QT+E +LR +W DH+ L++ +YNN HS+ QM P+E ++ Sbjct: 1089 NQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135 Score = 109 bits (270), Expect(2) = 3e-023 Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 6/356 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 N + RW +D++ I Y PG AN + +L R+ I K+ E+ + + + Sbjct: 798 NKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQIS-- 855 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL-K 10132 I D + +V ++ L++ + N +++RV Q DG+L Sbjct: 856 --ITDDFKNQVVTEYTNDTKLLNLL---------------NNEDKRVEENIQLKDGLLIN 898 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 ++++ +PN I++K H G + ++ +T KG++K I ++V Sbjct: 899 SKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCH 958 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHF 10492 Q K + + G + I WE ++MDFI S +N++FV+VDR +K + Sbjct: 959 TCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSG-YNALFVVVDRFSKMAIL 1017 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + + + AE A+++ Q+V G II++ FT+Q WK F K N V+ F Sbjct: 1018 VPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDF----AHKYNFVMKF 1073 Query: 10673 IL-----KEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEA 10837 L + + + T +T+E +LR W D++ L++ SYNN+ HS+ QM P+E Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133 Query: 10838 LY 10843 ++ Sbjct: 1134 VH 1135 Score = 51.2 bits (120), Expect(2) = 6e-009 Identities = 32/129 (24%), Positives = 59/129 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F ++ + + +S ++ +H ++ VLQ L+N + +K Sbjct: 541 APAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAK 600 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF V F+G+ IS +G +E I+ + +P K + FL Y R+F+ + S Sbjct: 601 CEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTS 660 Query: 9418 SISSPLTKI 9444 ++ PL + Sbjct: 661 QLTHPLNNL 669 Score = 43.0 bits (99), Expect = 0.41 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = -1 Query: 49307 EFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLE-VVHP 49131 EFQ GD V +K + L + KL+P + GP+ +++ G YELDLP ++ + Sbjct: 1191 EFQPGDLVMVKRTKTGF---LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSS 1247 Query: 49130 VFHVSMLRK 49104 FHVS L K Sbjct: 1248 TFHVSHLEK 1256 Score = 37.5 bits (85), Expect(2) = 6e-009 Identities = 24/83 (28%), Positives = 38/83 (44%) Frame = +2 Query: 8792 VLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMK 8971 V+F+ KK+ LR+ +DY N YPL I ++L+S H ++ Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511 Query: 8972 VRECDVPKTNFIKRYGHYLFLVI 9040 VR+ D K F G + +LV+ Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVM 534 Score = 27.8 bits (60), Expect(2) = 3e-023 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL 9749 + Y S + + NY D E+ +++ SLK W H+L I TD+++L Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNL 786 >emb|CAB60245.1| (AL023518) TF2 type transposable element [Schizosaccharomyces pombe] Length = 1333 Score = 245 bits (619), Expect = 4e-062 Identities = 154/523 (29%), Positives = 269/523 (50%), Gaps = 12/523 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 +EF +++ + + I Y + P +++ + +++ L+ G IR S + PV+FV KK+ Sbjct: 400 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G+L+M ++YK LNK N YPLP I+ L ++QG+ F+K+DL+S+YH +RVR+ D K Sbjct: 460 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 519 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 AF G +++ V+ +G++ A A F +N + + V+ ++DDIL++S+SE EH Sbjct: 520 LAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHV 579 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 H++ VL+ L++ L +KCEF + + F+G+ I G + I+ V W +P Sbjct: 580 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNR 639 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 E+R FL Y R+F+ K + ++ PL L +K ++ WT ++ +K L P L Sbjct: 640 KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + ++ D S V +G VL Q + Y S ++ K + NY D ++ + Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759 Query: 50647 VHALKIWRHYLYGF--HVDIYTDHKSL--QYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 + +LK WRHYL I TDH++L + + + R RW L+D++ +I Y Sbjct: 760 IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819 Query: 50479 GKANVVVDALSR---KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAK 50309 G AN + DALSR ++ D + V I + + + + Sbjct: 820 GSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLN 879 Query: 50308 SSIIDEVKRHQYKDPILAQYRDAALQKENTHLRIHLTECYNMKVDCVHPILQATT 50144 + + Q KD +L +D L +T L + + Y+ + +HP ++ T Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLT 934 Score = 146 bits (364), Expect = 3e-032 Identities = 75/227 (33%), Positives = 124/227 (54%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 +L R ++ + H I+PG + + + + W G++K I E+V C CQ K + K Sbjct: 910 QLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHK 969 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 G LQ I WE ++MDFIT LP + ++++V++DR +K A +P + +AE Sbjct: 970 PYGPLQPIPPSERPWESLSMDFITALPESSGY-NALFVVVDRFSKMAILVPCTKSITAEQ 1028 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 R++ + ++ G P II+D FT+ W+ F + S + PQTDG++ERT Sbjct: 1029 TARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERT 1088 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALY 49474 QT+E +LR +W DH+ L++ +YNN HS+ QM P+E ++ Sbjct: 1089 NQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135 Score = 109 bits (270), Expect(2) = 3e-023 Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 6/356 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 N + RW +D++ I Y PG AN + +L R+ I K+ E+ + + + Sbjct: 798 NKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQIS-- 855 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL-K 10132 I D + +V ++ L++ + N +++RV Q DG+L Sbjct: 856 --ITDDFKNQVVTEYTNDTKLLNLL---------------NNEDKRVEENIQLKDGLLIN 898 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 ++++ +PN I++K H G + ++ +T KG++K I ++V Sbjct: 899 SKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCH 958 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHF 10492 Q K + + G + I WE ++MDFI S +N++FV+VDR +K + Sbjct: 959 TCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSG-YNALFVVVDRFSKMAIL 1017 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + + + AE A+++ Q+V G II++ FT+Q WK F K N V+ F Sbjct: 1018 VPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDF----AHKYNFVMKF 1073 Query: 10673 IL-----KEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEA 10837 L + + + T +T+E +LR W D++ L++ SYNN+ HS+ QM P+E Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133 Query: 10838 LY 10843 ++ Sbjct: 1134 VH 1135 Score = 51.2 bits (120), Expect(2) = 6e-009 Identities = 32/129 (24%), Positives = 59/129 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F ++ + + +S ++ +H ++ VLQ L+N + +K Sbjct: 541 APAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAK 600 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF V F+G+ IS +G +E I+ + +P K + FL Y R+F+ + S Sbjct: 601 CEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTS 660 Query: 9418 SISSPLTKI 9444 ++ PL + Sbjct: 661 QLTHPLNNL 669 Score = 43.0 bits (99), Expect = 0.41 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = -1 Query: 49307 EFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLE-VVHP 49131 EFQ GD V +K + L + KL+P + GP+ +++ G YELDLP ++ + Sbjct: 1191 EFQPGDLVMVKRTKTGF---LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSS 1247 Query: 49130 VFHVSMLRK 49104 FHVS L K Sbjct: 1248 TFHVSHLEK 1256 Score = 37.5 bits (85), Expect(2) = 6e-009 Identities = 24/83 (28%), Positives = 38/83 (44%) Frame = +2 Query: 8792 VLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMK 8971 V+F+ KK+ LR+ +DY N YPL I ++L+S H ++ Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511 Query: 8972 VRECDVPKTNFIKRYGHYLFLVI 9040 VR+ D K F G + +LV+ Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVM 534 Score = 27.8 bits (60), Expect(2) = 3e-023 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL 9749 + Y S + + NY D E+ +++ SLK W H+L I TD+++L Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNL 786 >gb|AAA91215.1| (L10324) protease, reverse transcriptase, RNAse H, integrase protein [Schizosaccharomyces pombe] Length = 1333 Score = 245 bits (619), Expect = 4e-062 Identities = 154/523 (29%), Positives = 269/523 (50%), Gaps = 12/523 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 +EF +++ + + I Y + P +++ + +++ L+ G IR S + PV+FV KK+ Sbjct: 400 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G+L+M ++YK LNK N YPLP I+ L ++QG+ F+K+DL+S+YH +RVR+ D K Sbjct: 460 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 519 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 AF G +++ V+ +G++ A A F +N + + V+ ++DDIL++S+SE EH Sbjct: 520 LAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHV 579 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 H++ VL+ L++ L +KCEF + + F+G+ I G + I+ V W +P Sbjct: 580 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNR 639 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 E+R FL Y R+F+ K + ++ PL L +K ++ WT ++ +K L P L Sbjct: 640 KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + ++ D S V +G VL Q + Y S ++ K + NY D ++ + Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759 Query: 50647 VHALKIWRHYLYGF--HVDIYTDHKSL--QYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 + +LK WRHYL I TDH++L + + + R RW L+D++ +I Y Sbjct: 760 IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819 Query: 50479 GKANVVVDALSR---KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAK 50309 G AN + DALSR ++ D + V I + + + + Sbjct: 820 GSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLN 879 Query: 50308 SSIIDEVKRHQYKDPILAQYRDAALQKENTHLRIHLTECYNMKVDCVHPILQATT 50144 + + Q KD +L +D L +T L + + Y+ + +HP ++ T Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLT 934 Score = 146 bits (364), Expect = 3e-032 Identities = 75/227 (33%), Positives = 124/227 (54%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 +L R ++ + H I+PG + + + + W G++K I E+V C CQ K + K Sbjct: 910 QLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHK 969 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 G LQ I WE ++MDFIT LP + ++++V++DR +K A +P + +AE Sbjct: 970 PYGPLQPIPPSERPWESLSMDFITALPESSGY-NALFVVVDRFSKMAILVPCTKSITAEQ 1028 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 R++ + ++ G P II+D FT+ W+ F + S + PQTDG++ERT Sbjct: 1029 TARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERT 1088 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALY 49474 QT+E +LR +W DH+ L++ +YNN HS+ QM P+E ++ Sbjct: 1089 NQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135 Score = 109 bits (270), Expect(2) = 3e-023 Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 6/356 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 N + RW +D++ I Y PG AN + +L R+ I K+ E+ + + + Sbjct: 798 NKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQIS-- 855 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL-K 10132 I D + +V ++ L++ + N +++RV Q DG+L Sbjct: 856 --ITDDFKNQVVTEYTNDTKLLNLL---------------NNEDKRVEENIQLKDGLLIN 898 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 ++++ +PN I++K H G + ++ +T KG++K I ++V Sbjct: 899 SKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCH 958 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHF 10492 Q K + + G + I WE ++MDFI S +N++FV+VDR +K + Sbjct: 959 TCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSG-YNALFVVVDRFSKMAIL 1017 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + + + AE A+++ Q+V G II++ FT+Q WK F K N V+ F Sbjct: 1018 VPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDF----AHKYNFVMKF 1073 Query: 10673 IL-----KEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEA 10837 L + + + T +T+E +LR W D++ L++ SYNN+ HS+ QM P+E Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133 Query: 10838 LY 10843 ++ Sbjct: 1134 VH 1135 Score = 51.2 bits (120), Expect(2) = 6e-009 Identities = 32/129 (24%), Positives = 59/129 (44%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F ++ + + +S ++ +H ++ VLQ L+N + +K Sbjct: 541 APAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAK 600 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 EF V F+G+ IS +G +E I+ + +P K + FL Y R+F+ + S Sbjct: 601 CEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTS 660 Query: 9418 SISSPLTKI 9444 ++ PL + Sbjct: 661 QLTHPLNNL 669 Score = 43.0 bits (99), Expect = 0.41 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = -1 Query: 49307 EFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLE-VVHP 49131 EFQ GD V +K + L + KL+P + GP+ +++ G YELDLP ++ + Sbjct: 1191 EFQPGDLVMVKRTKTGF---LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSS 1247 Query: 49130 VFHVSMLRK 49104 FHVS L K Sbjct: 1248 TFHVSHLEK 1256 Score = 37.5 bits (85), Expect(2) = 6e-009 Identities = 24/83 (28%), Positives = 38/83 (44%) Frame = +2 Query: 8792 VLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMK 8971 V+F+ KK+ LR+ +DY N YPL I ++L+S H ++ Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511 Query: 8972 VRECDVPKTNFIKRYGHYLFLVI 9040 VR+ D K F G + +LV+ Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVM 534 Score = 27.8 bits (60), Expect(2) = 3e-023 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL 9749 + Y S + + NY D E+ +++ SLK W H+L I TD+++L Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNL 786 >dbj|BAB01983.1| (AP002459) retroelement pol polyprotein-like [Arabidopsis thaliana] Length = 865 Score = 239 bits (603), Expect = 3e-060 Identities = 130/264 (49%), Positives = 163/264 (61%) Frame = -2 Query: 51058 DGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF* 50879 +G+ VD +KIEA+K W RPT TE+RSFL LA YYRRFV+ FA ++ PL +LT K F Sbjct: 296 EGVSVDLEKIEAIKDWPRPTNATEIRSFLGLAGYYRRFVKGFASMAPPLTKLTGKNVPFV 355 Query: 50878 WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQL 50699 W+ CE F LK+ LT P L LPE + Y++Y D S VGLGCVLMQ GKVIAYASRQL Sbjct: 356 WSPECEEGFVSLKEILTSTPVLALPEHGESYMVYTDASRVGLGCVLMQRGKVIAYASRQL 415 Query: 50698 RKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLE 50519 RKHE NYPTHDL++ V +TDHKSL+YI Q EL LRQRRW+E Sbjct: 416 RKHEGNYPTHDLEMSAV------------------FTDHKSLKYIITQPELNLRQRRWME 457 Query: 50518 LLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSED 50339 L+ DYD++I YH GKA+VV DALSRK +G E + + +L +C E Sbjct: 458 LVADYDLEIAYHHGKASVVADALSRKRVGVAPGQSVEAL-----VSEIRALRLCAVAREP 512 Query: 50338 SGVSI*EVAKSSIIDEVKRHQYKD 50267 G+ V + ++ V+ Q KD Sbjct: 513 LGLE--AVDRVDLLSRVRLAQEKD 534 Score = 152 bits (380), Expect(2) = 7e-062 Identities = 64/123 (52%), Positives = 91/123 (73%) Frame = -3 Query: 49710 TNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEF 49531 + FWR+FQ +GT+V +ST +HPQTDG+ ERTIQTLEDMLR ++D+ G W DHL L+EF Sbjct: 584 STFWRAFQAEMGTKVQMSTPYHPQTDGQFERTIQTLEDMLRMCVLDWGGHWADHLSLVEF 643 Query: 49530 AYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVGETKLIGPDMIQQVVDKVKLIQERLLAS 49351 AYNN Y + I MAP+EALYGR CR+P+ W VGE + G D +Q+ +++++++ + + Sbjct: 644 AYNNSYQAGIGMAPFEALYGRPCRTPLCWTQVGERSIYGADYVQETTERIRVLKLNMKEA 703 Query: 49350 QSR 49342 Q R Sbjct: 704 QDR 706 Score = 114 bits (282), Expect(2) = 7e-062 Identities = 58/151 (38%), Positives = 92/151 (60%) Frame = -1 Query: 49337 SHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDL 49158 S+AD RR +LEF++GD V+LK++ ++G R + KLS RY+GP++IV +G VAY L+L Sbjct: 709 SYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSLRYMGPFRIVERVGPVAYMLEL 768 Query: 49157 PSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTKDV 48978 P + H VFHVSMLRKC+ V + + E + + +L+R+++ L+ K + Sbjct: 769 PDVMRAFHKVFHVSMLRKCLHKDDEVLAKIPEDLQPNMTLEARQVRVLERRIKELQRKKI 828 Query: 48977 ASVKVLWQNNNREEMTREVEDEMKNKYPYLF 48885 + +KVLW + E T + E MK ++ F Sbjct: 829 SLIKVLWDCDGVTEETWQPEARMKARFKKWF 859 Score = 108 bits (267), Expect(3) = 3e-035 Identities = 59/151 (39%), Positives = 92/151 (60%), Gaps = 1/151 (0%) Frame = +2 Query: 10595 SAYFTAQLWKSFQKSQGSKLN*VLLFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNM 10771 S + W++FQ G+K+ + + + + + TI+TLE MLR CV+D+ +W D++ Sbjct: 579 SLLLRSTFWRAFQAEMGTKVQMSTPYHPQTDGQFERTIQTLEDMLRMCVLDWGGHWADHL 638 Query: 10772 PLIEYSYNNSYHSSIQMAPYEALYGRRGRYHIRLFKVGESGLIGLDVVHQIMDKLKVIQE 10951 L+E++YNNSY + I MAP+EALYGR R + +VGE + G D V + ++++V++ Sbjct: 639 SLVEFAYNNSYQAGIGMAPFEALYGRPCRTPLCWTQVGERSIYGADYVQETTERIRVLKL 698 Query: 10952 RMMTTQSCKKFNTDIRRRPLECEVDDWVYLKV 11047 M Q + D RRR LE EV D VYLK+ Sbjct: 699 NMKEAQDRQWSYADKRRRELEFEVGDRVYLKM 730 Score = 66.7 bits (160), Expect(3) = 3e-024 Identities = 41/98 (41%), Positives = 51/98 (51%) Frame = +1 Query: 9289 EGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ 9468 EG+ VD EKIE+ +PRP I SFL LA YYRRFV F+S++ PLTK+T V F Sbjct: 296 EGVSVDLEKIEAIKDWPRPTNATEIRSFLGLAGYYRRFVKGFASMAPPLTKLTGKNVPFV 355 Query: 9469 *SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 S CE F L + ++VY AS Sbjct: 356 WSPECEEGFVSLKEILTSTPVLALPEHGESYMVYTDAS 393 Score = 52.3 bits (123), Expect = 6e-004 Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 1/178 (0%) Frame = -1 Query: 1304 GLSDQGQTPPIFSAPAPQVPEVQHAASVAPRMDASLEISTFPRLTTGPIMTSDQHELFSK 1125 G + G P+ + AP+V EVQ A+VA + + L + + Sbjct: 2 GAAAGGAQVPVQAPVAPRVAEVQQRAAVAEEVPSYLR-------------------MMEQ 42 Query: 1124 FLKLNPPVFKVAQS-EDAYDFLVDCHELLHKMGIVERFGVEFVTYQFKGNAKMWWRSHVG 948 ++ F S E+A + + V+ + +G+A +WW+S V Sbjct: 43 LQRIGIGYFSGGTSPEEADSWRSRVERNFGSSRCPVEYRVDLAVHFLEGDAHLWWKS-VT 101 Query: 947 CQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFFSLEQGRMSLTAYEAKFRASSRYA 771 + QA M+WA F + F KY P+ DR F L QG S+ Y+ +F YA Sbjct: 102 TRRRQAN-MSWADFVAEFNAKYFPQEALDRMEAHFLELTQGERSVREYDREFNRLLVYA 159 Score = 52.3 bits (123), Expect(3) = 3e-035 Identities = 27/77 (35%), Positives = 45/77 (58%) Frame = +1 Query: 11053 MKGVLRFVNKGKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPS 11232 ++G R +++ KL R++G ++I +RVG Y LELP + A H VFH+SML K L Sbjct: 733 LRGPNRSISETKLSLRYMGPFRIVERVGPVAYMLELPDVMRAFHKVFHVSMLRKCLHKDD 792 Query: 11233 LIVPTKIVGIKDNLSYE 11283 ++ ++ N++ E Sbjct: 793 EVLAKIPEDLQPNMTLE 809 Score = 50.8 bits (119), Expect(3) = 3e-024 Identities = 22/38 (57%), Positives = 28/38 (72%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMG 9889 NL+QRRW+EL DYD+ I YH GKA+VV +L R +G Sbjct: 449 NLRQRRWMELVADYDLEIAYHHGKASVVADALSRKRVG 486 Score = 43.0 bits (99), Expect(3) = 3e-024 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = +3 Query: 9570 LSCIL*N-GKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKS 9746 L C+L GKVI Y S+ L +E NYPTHD+E+++ +FTD+KS Sbjct: 397 LGCVLMQRGKVIAYASRQLRKHEGNYPTHDLEMSA------------------VFTDHKS 438 Query: 9747 L*YVFT 9764 L Y+ T Sbjct: 439 LKYIIT 444 Score = 41.8 bits (96), Expect = 0.92 Identities = 31/111 (27%), Positives = 47/111 (41%) Frame = -1 Query: 53315 FFGSRPQDDPQKFICQMQRTLRISKASETESVELATYRLRDVDINWYESWELSRGEGAPP 53136 F G ++ + +++R S+ V+LA + L W++S R + Sbjct: 51 FSGGTSPEEADSWRSRVERNFGSSRCPVEYRVDLAVHFLEGDAHLWWKSVTTRRRQAN-- 108 Query: 53135 MIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYA 52983 M W +FV F + E FL L + RSVREY EF+ L YA Sbjct: 109 MSWADFVAEFNAKYFPQEALDRMEAHFLELTQGERSVREYDREFNRLLVYA 159 Score = 41.0 bits (94), Expect(2) = 0.14 Identities = 23/77 (29%), Positives = 48/77 (61%), Gaps = 1/77 (1%) Frame = +3 Query: 42477 SLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKISSKTIHRGRI-LK*DGPFDV 42653 ++++A R + AD+ LEF+VG+ V +K+ + +++I ++ L+ GPF + Sbjct: 699 NMKEAQDRQWSYADKRRRELEFEVGDRVYLKMA---MLRGPNRSISETKLSLRYMGPFRI 755 Query: 42654 IERAGEVSCMLKLSEILK 42707 +ER G V+ ML+L ++++ Sbjct: 756 VERVGPVAYMLELPDVMR 773 Score = 37.1 bits (84), Expect(3) = 3e-035 Identities = 15/46 (32%), Positives = 29/46 (62%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFE 11435 + + ++++L+ KK++ +KVLW V E T++ E M+ R+ FE Sbjct: 815 VLERRIKELQRKKISLIKVLWDCDGVTEETWQPEARMKARFKKWFE 860 Score = 22.3 bits (46), Expect(2) = 0.14 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%) Frame = +1 Query: 42709 FHPTFHVSFL-KPFHEDVE 42762 FH FHVS L K H+D E Sbjct: 775 FHKVFHVSMLRKCLHKDDE 793 >emb|CAB61532.1| (AL021815) retrotransposable element; tf2-type transposon [Schizosaccharomyces pombe] Length = 1333 Score = 242 bits (612), Expect = 3e-061 Identities = 153/523 (29%), Positives = 269/523 (51%), Gaps = 12/523 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 +EF +++ + + I Y + P +++ + +++ L+ G IR S + PV+FV KK+ Sbjct: 400 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G+L+M ++YK LNK N YPLP I+ L ++QG+ F+K+DL+S+YH +RVR+ D K Sbjct: 460 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 519 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 AF G +++ V+ +G++ A A F +N + + V+ ++D+IL++S+SE EH Sbjct: 520 LAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHV 579 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 H++ VL+ L++ L +KCEF + + F+G+ I G + I+ V W +P Sbjct: 580 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNR 639 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 E+R FL Y R+F+ K + ++ PL L +K ++ WT ++ +K L P L Sbjct: 640 KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + ++ D S V +G VL Q + Y S ++ K + NY D ++ + Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759 Query: 50647 VHALKIWRHYLYGF--HVDIYTDHKSL--QYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 + +LK WRHYL I TDH++L + + + R RW L+D++ +I Y Sbjct: 760 IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819 Query: 50479 GKANVVVDALSR---KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAK 50309 G AN + DALSR ++ D + V I + + + + Sbjct: 820 GSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLN 879 Query: 50308 SSIIDEVKRHQYKDPILAQYRDAALQKENTHLRIHLTECYNMKVDCVHPILQATT 50144 + + Q KD +L +D L +T L + + Y+ + +HP ++ T Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLT 934 Score = 146 bits (364), Expect = 3e-032 Identities = 75/227 (33%), Positives = 124/227 (54%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 +L R ++ + H I+PG + + + + W G++K I E+V C CQ K + K Sbjct: 910 QLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHK 969 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 G LQ I WE ++MDFIT LP + ++++V++DR +K A +P + +AE Sbjct: 970 PYGPLQPIPPSERPWESLSMDFITALPESSGY-NALFVVVDRFSKMAILVPCTKSITAEQ 1028 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 R++ + ++ G P II+D FT+ W+ F + S + PQTDG++ERT Sbjct: 1029 TARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERT 1088 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALY 49474 QT+E +LR +W DH+ L++ +YNN HS+ QM P+E ++ Sbjct: 1089 NQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135 Score = 109 bits (270), Expect(2) = 3e-023 Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 6/356 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 N + RW +D++ I Y PG AN + +L R+ I K+ E+ + + + Sbjct: 798 NKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQIS-- 855 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL-K 10132 I D + +V ++ L++ + N +++RV Q DG+L Sbjct: 856 --ITDDFKNQVVTEYTNDTKLLNLL---------------NNEDKRVEENIQLKDGLLIN 898 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 ++++ +PN I++K H G + ++ +T KG++K I ++V Sbjct: 899 SKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCH 958 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHF 10492 Q K + + G + I WE ++MDFI S +N++FV+VDR +K + Sbjct: 959 TCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSG-YNALFVVVDRFSKMAIL 1017 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + + + AE A+++ Q+V G II++ FT+Q WK F K N V+ F Sbjct: 1018 VPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDF----AHKYNFVMKF 1073 Query: 10673 IL-----KEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEA 10837 L + + + T +T+E +LR W D++ L++ SYNN+ HS+ QM P+E Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133 Query: 10838 LY 10843 ++ Sbjct: 1134 VH 1135 Score = 53.1 bits (125), Expect(2) = 2e-009 Identities = 33/130 (25%), Positives = 60/130 (45%) Frame = +1 Query: 9055 IAPAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFS 9234 IAPA F ++ + + +S ++ +H ++ VLQ L+N + + Sbjct: 540 IAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K EF V F+G+ IS +G +E I+ + +P K + FL Y R+F+ + Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659 Query: 9415 SSISSPLTKI 9444 S ++ PL + Sbjct: 660 SQLTHPLNNL 669 Score = 43.0 bits (99), Expect = 0.41 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = -1 Query: 49307 EFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLE-VVHP 49131 EFQ GD V +K + L + KL+P + GP+ +++ G YELDLP ++ + Sbjct: 1191 EFQPGDLVMVKRTKTGF---LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSS 1247 Query: 49130 VFHVSMLRK 49104 FHVS L K Sbjct: 1248 TFHVSHLEK 1256 Score = 37.5 bits (85), Expect(2) = 2e-009 Identities = 24/83 (28%), Positives = 38/83 (44%) Frame = +2 Query: 8792 VLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMK 8971 V+F+ KK+ LR+ +DY N YPL I ++L+S H ++ Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511 Query: 8972 VRECDVPKTNFIKRYGHYLFLVI 9040 VR+ D K F G + +LV+ Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVM 534 Score = 27.8 bits (60), Expect(2) = 3e-023 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL 9749 + Y S + + NY D E+ +++ SLK W H+L I TD+++L Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNL 786 >emb|CAB64236.1| (AL035675) retrotransposable element; tf2-type transposon [Schizosaccharomyces pombe] Length = 1333 Score = 242 bits (612), Expect = 3e-061 Identities = 153/523 (29%), Positives = 269/523 (51%), Gaps = 12/523 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 +EF +++ + + I Y + P +++ + +++ L+ G IR S + PV+FV KK+ Sbjct: 400 LEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKE 459 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G+L+M ++YK LNK N YPLP I+ L ++QG+ F+K+DL+S+YH +RVR+ D K Sbjct: 460 GTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHK 519 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 AF G +++ V+ +G++ A A F +N + + V+ ++D+IL++S+SE EH Sbjct: 520 LAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHV 579 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTP 50993 H++ VL+ L++ L +KCEF + + F+G+ I G + I+ V W +P Sbjct: 580 KHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNR 639 Query: 50992 TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 E+R FL Y R+F+ K + ++ PL L +K ++ WT ++ +K L P L Sbjct: 640 KELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVL 699 Query: 50812 NLPEGPDGYVIYCDTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + ++ D S V +G VL Q + Y S ++ K + NY D ++ + Sbjct: 700 RHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAI 759 Query: 50647 VHALKIWRHYLYGF--HVDIYTDHKSL--QYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 + +LK WRHYL I TDH++L + + + R RW L+D++ +I Y Sbjct: 760 IKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRP 819 Query: 50479 GKANVVVDALSR---KSMGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAK 50309 G AN + DALSR ++ D + V I + + + + Sbjct: 820 GSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLN 879 Query: 50308 SSIIDEVKRHQYKDPILAQYRDAALQKENTHLRIHLTECYNMKVDCVHPILQATT 50144 + + Q KD +L +D L +T L + + Y+ + +HP ++ T Sbjct: 880 NEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLT 934 Score = 146 bits (364), Expect = 3e-032 Identities = 75/227 (33%), Positives = 124/227 (54%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 +L R ++ + H I+PG + + + + W G++K I E+V C CQ K + K Sbjct: 910 QLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHK 969 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 G LQ I WE ++MDFIT LP + ++++V++DR +K A +P + +AE Sbjct: 970 PYGPLQPIPPSERPWESLSMDFITALPESSGY-NALFVVVDRFSKMAILVPCTKSITAEQ 1028 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 R++ + ++ G P II+D FT+ W+ F + S + PQTDG++ERT Sbjct: 1029 TARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERT 1088 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALY 49474 QT+E +LR +W DH+ L++ +YNN HS+ QM P+E ++ Sbjct: 1089 NQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135 Score = 109 bits (270), Expect(2) = 3e-023 Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 6/356 (1%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 N + RW +D++ I Y PG AN + +L R+ I K+ E+ + + + Sbjct: 798 NKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQIS-- 855 Query: 9956 VRIMDSTEGGIVVTNGAESSLVS*VKEK*DQDPIFLVLKENVKNQRVLAFEQGGDGVL-K 10132 I D + +V ++ L++ + N +++RV Q DG+L Sbjct: 856 --ITDDFKNQVVTEYTNDTKLLNLL---------------NNEDKRVEENIQLKDGLLIN 898 Query: 10133 YQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFS 10312 ++++ +PN I++K H G + ++ +T KG++K I ++V Sbjct: 899 SKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCH 958 Query: 10313 NYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHF 10492 Q K + + G + I WE ++MDFI S +N++FV+VDR +K + Sbjct: 959 TCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSG-YNALFVVVDRFSKMAIL 1017 Query: 10493 LQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLF 10672 + + + AE A+++ Q+V G II++ FT+Q WK F K N V+ F Sbjct: 1018 VPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDF----AHKYNFVMKF 1073 Query: 10673 IL-----KEVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEA 10837 L + + + T +T+E +LR W D++ L++ SYNN+ HS+ QM P+E Sbjct: 1074 SLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEI 1133 Query: 10838 LY 10843 ++ Sbjct: 1134 VH 1135 Score = 53.1 bits (125), Expect(2) = 2e-009 Identities = 33/130 (25%), Positives = 60/130 (45%) Frame = +1 Query: 9055 IAPAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFS 9234 IAPA F ++ + + +S ++ +H ++ VLQ L+N + + Sbjct: 540 IAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K EF V F+G+ IS +G +E I+ + +P K + FL Y R+F+ + Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659 Query: 9415 SSISSPLTKI 9444 S ++ PL + Sbjct: 660 SQLTHPLNNL 669 Score = 43.0 bits (99), Expect = 0.41 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = -1 Query: 49307 EFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLE-VVHP 49131 EFQ GD V +K + L + KL+P + GP+ +++ G YELDLP ++ + Sbjct: 1191 EFQPGDLVMVKRTKTGF---LHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSS 1247 Query: 49130 VFHVSMLRK 49104 FHVS L K Sbjct: 1248 TFHVSHLEK 1256 Score = 37.5 bits (85), Expect(2) = 2e-009 Identities = 24/83 (28%), Positives = 38/83 (44%) Frame = +2 Query: 8792 VLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMK 8971 V+F+ KK+ LR+ +DY N YPL I ++L+S H ++ Sbjct: 452 VMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIR 511 Query: 8972 VRECDVPKTNFIKRYGHYLFLVI 9040 VR+ D K F G + +LV+ Sbjct: 512 VRKGDEHKLAFRCPRGVFEYLVM 534 Score = 27.8 bits (60), Expect(2) = 3e-023 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL 9749 + Y S + + NY D E+ +++ SLK W H+L I TD+++L Sbjct: 735 VGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNL 786 >gb|AAA70219.1| (M12927) unknown protein [Drosophila melanogaster] Length = 1010 Score = 239 bits (603), Expect = 3e-060 Identities = 135/421 (32%), Positives = 236/421 (55%), Gaps = 19/421 (4%) Frame = -2 Query: 51688 LDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKK------DGS 51527 +D +P++ Y + +++ LL+ G IRPS SP+ +P V KK + + Sbjct: 152 VDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPN 211 Query: 51526 LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTA 51347 ++ I++++LN+ T+ +RYP+P I + L AK F+ +DL+S YH++ + E D KT+ Sbjct: 212 KRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTS 271 Query: 51346 FWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADH 51167 F G Y+F L FG+ NA ++F ++ V + + V+VDD++++S +E +H H Sbjct: 272 FSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRH 331 Query: 51166 LRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTE 50987 + TVL+ L + K F+ S+ +LG I+ DG + D +K++A++ + P + Sbjct: 332 IDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYK 391 Query: 50986 VRSFLELA*YYRRFVEKFALISAPLIRLTQ-----------KAAKF*WTNACERSF*LLK 50840 VRSFL LA YYR F++ FA I+ P+ + + K + +F L+ Sbjct: 392 VRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLR 451 Query: 50839 DKLTIAP-FLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDL 50663 + L L P+ + + D S G+G VL Q G+ I SR L++ E NY T++ Sbjct: 452 NILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNER 511 Query: 50662 KLEIVVHALKIWRHYLYGF-HVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILY 50486 +L +V AL +++LYG ++I+TDH+ L + + + +RW + ++ + Y Sbjct: 512 ELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFY 571 Query: 50485 HLGKANVVVDALSRKSMGSL 50426 GK N V DALSR+++ +L Sbjct: 572 KPGKENFVADALSRQNLNAL 591 Score = 62.8 bits (150), Expect(2) = 7e-012 Identities = 35/99 (35%), Positives = 55/99 (55%) Frame = +1 Query: 9148 YSWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY 9327 +S N+ DH + VL+ L + V K F + V +LG I+S +G + D EK+++ Sbjct: 321 FSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAI 380 Query: 9328 *SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKI 9444 +P P + SFL LA YYR F+ F++I+ P+T I Sbjct: 381 QEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDI 419 Score = 41.0 bits (94), Expect = 1.6 Identities = 48/196 (24%), Positives = 81/196 (40%), Gaps = 4/196 (2%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ* 49882 Y++ M E VA C C K + L E IP++ EM+++D + T Sbjct: 739 YYFPKMGSLAKEVVANCRVCTQAKYDRHPKKQELGETPIPSYTGEMVHIDIFS----TDR 794 Query: 49881 K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNF 49702 K ID+ +K A PV + + + + +I+ L ++ D F + Sbjct: 795 K--LFLTCIDKFSKYAIVQPVVSRTIVD--ITAPLLQIINLFPNIKTVYCDNEPAFNSET 850 Query: 49701 WRSFQK-GLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLI---E 49534 S K G + + H ++G+ ER TL ++ R +D K +D + LI Sbjct: 851 VTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLDKK--TNDTVELILRAT 908 Query: 49533 FAYNNHYHSSIQMAPYEALY 49474 YN HS + P E ++ Sbjct: 909 IEYNKTVHSVTRERPIEVVH 928 Score = 37.5 bits (85), Expect(2) = 0.006 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = +3 Query: 9525 FDFDIAFGYSCIYSVLSCIL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHF 9704 FD S I +VLS G+ I S+ L E+NY T++ EL ++V++L +F Sbjct: 470 FDLTTDASASGIGAVLSQ---EGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNF 526 Query: 9705 LYGIR-VDIFTDNKSL 9749 LYG R ++IFTD++ L Sbjct: 527 LYGSREINIFTDHQPL 542 Score = 36.0 bits (81), Expect(2) = 7e-012 Identities = 20/69 (28%), Positives = 32/69 (45%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+ ID+ + N T +YP+ I ++L+SG H++ + E D KT+F Sbjct: 213 RLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSF 272 Query: 9005 IKRYGHYLF 9031 G Y F Sbjct: 273 SVNGGKYEF 281 Score = 30.5 bits (67), Expect(2) = 0.006 Identities = 15/54 (27%), Positives = 26/54 (47%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVH 9937 N K +RW ++ + Y PGK N V +L R ++ ++ E + A +H Sbjct: 552 NAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQNL--NALQNEPQSDAATIH 603 >gb|AAC82604.1| (AF033821) Prgag-pol [Drosophila melanogaster] Length = 1463 Score = 239 bits (603), Expect = 3e-060 Identities = 135/421 (32%), Positives = 236/421 (55%), Gaps = 19/421 (4%) Frame = -2 Query: 51688 LDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKK------DGS 51527 +D +P++ Y + +++ LL+ G IRPS SP+ +P V KK + + Sbjct: 605 VDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPN 664 Query: 51526 LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTA 51347 ++ I++++LN+ T+ +RYP+P I + L AK F+ +DL+S YH++ + E D KT+ Sbjct: 665 KRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTS 724 Query: 51346 FWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADH 51167 F G Y+F L FG+ NA ++F ++ V + + V+VDD++++S +E +H H Sbjct: 725 FSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRH 784 Query: 51166 LRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTE 50987 + TVL+ L + K F+ S+ +LG I+ DG + D +K++A++ + P + Sbjct: 785 IDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYK 844 Query: 50986 VRSFLELA*YYRRFVEKFALISAPLIRLTQ-----------KAAKF*WTNACERSF*LLK 50840 VRSFL LA YYR F++ FA I+ P+ + + K + +F L+ Sbjct: 845 VRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLR 904 Query: 50839 DKLTIAP-FLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDL 50663 + L L P+ + + D S G+G VL Q G+ I SR L++ E NY T++ Sbjct: 905 NILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNER 964 Query: 50662 KLEIVVHALKIWRHYLYGF-HVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILY 50486 +L +V AL +++LYG ++I+TDH+ L + + + +RW + ++ + Y Sbjct: 965 ELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFY 1024 Query: 50485 HLGKANVVVDALSRKSMGSL 50426 GK N V DALSR+++ +L Sbjct: 1025 KPGKENFVADALSRQNLNAL 1044 Score = 62.8 bits (150), Expect(2) = 7e-012 Identities = 35/99 (35%), Positives = 55/99 (55%) Frame = +1 Query: 9148 YSWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY 9327 +S N+ DH + VL+ L + V K F + V +LG I+S +G + D EK+++ Sbjct: 774 FSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAI 833 Query: 9328 *SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKI 9444 +P P + SFL LA YYR F+ F++I+ P+T I Sbjct: 834 QEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDI 872 Score = 41.0 bits (94), Expect = 1.6 Identities = 48/196 (24%), Positives = 81/196 (40%), Gaps = 4/196 (2%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ* 49882 Y++ M E VA C C K + L E IP++ EM+++D + T Sbjct: 1192 YYFPKMGSLAKEVVANCRVCTQAKYDRHPKKQELGETPIPSYTGEMVHIDIFS----TDR 1247 Query: 49881 K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNF 49702 K ID+ +K A PV + + + + +I+ L ++ D F + Sbjct: 1248 K--LFLTCIDKFSKYAIVQPVVSRTIVD--ITAPLLQIINLFPNIKTVYCDNEPAFNSET 1303 Query: 49701 WRSFQK-GLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLI---E 49534 S K G + + H ++G+ ER TL ++ R +D K +D + LI Sbjct: 1304 VTSMLKNSFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLDKK--TNDTVELILRAT 1361 Query: 49533 FAYNNHYHSSIQMAPYEALY 49474 YN HS + P E ++ Sbjct: 1362 IEYNKTVHSVTRERPIEVVH 1381 Score = 37.5 bits (85), Expect(2) = 0.006 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = +3 Query: 9525 FDFDIAFGYSCIYSVLSCIL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHF 9704 FD S I +VLS G+ I S+ L E+NY T++ EL ++V++L +F Sbjct: 923 FDLTTDASASGIGAVLSQ---EGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNF 979 Query: 9705 LYGIR-VDIFTDNKSL 9749 LYG R ++IFTD++ L Sbjct: 980 LYGSREINIFTDHQPL 995 Score = 36.0 bits (81), Expect(2) = 7e-012 Identities = 20/69 (28%), Positives = 32/69 (45%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+ ID+ + N T +YP+ I ++L+SG H++ + E D KT+F Sbjct: 666 RLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSF 725 Query: 9005 IKRYGHYLF 9031 G Y F Sbjct: 726 SVNGGKYEF 734 Score = 30.5 bits (67), Expect(2) = 0.006 Identities = 15/54 (27%), Positives = 26/54 (47%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVH 9937 N K +RW ++ + Y PGK N V +L R ++ ++ E + A +H Sbjct: 1005 NAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQNL--NALQNEPQSDAATIH 1056 >emb|CAA27371.1| (X03734) reverse transcriptase-like enzyme (930 aa) [Drosophila melanogaster] Length = 930 Score = 237 bits (599), Expect = 1e-059 Identities = 135/421 (32%), Positives = 235/421 (55%), Gaps = 19/421 (4%) Frame = -2 Query: 51688 LDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKK------DGS 51527 +D +P++ Y + +++ LL+ G IRPS SP+ +P V KK + + Sbjct: 157 VDNEPVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDASGNPN 216 Query: 51526 LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTA 51347 ++ I++++LN+ T+ +RYP+P I + L AK F+ +DL+S YH++ + E D KT+ Sbjct: 217 KRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTS 276 Query: 51346 FWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADH 51167 F G Y+F L FG+ NA ++F ++ V + + V+VDD++++S +E +H H Sbjct: 277 FSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRH 336 Query: 51166 LRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTE 50987 + TVL+ L + K F+ S+ +LG I+ DG + D +K++A++ + P + Sbjct: 337 IDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYK 396 Query: 50986 VRSFLELA*YYRRFVEKFALISAPLIRLTQ-----------KAAKF*WTNACERSF*LLK 50840 VRSFL LA YYR F++ FA I+ P+ + + K + +F L+ Sbjct: 397 VRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLR 456 Query: 50839 DKLTIAP-FLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDL 50663 + L L P + + D S G+G VL Q G+ I SR L++ E NY T++ Sbjct: 457 NILASEDVILKYPVFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNER 516 Query: 50662 KLEIVVHALKIWRHYLYGF-HVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILY 50486 +L +V AL +++LYG ++I+TDH+ L + + + +RW + ++ + Y Sbjct: 517 ELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFY 576 Query: 50485 HLGKANVVVDALSRKSMGSL 50426 GK N V DALSR+++ +L Sbjct: 577 KPGKENFVADALSRQNLNAL 596 Score = 62.8 bits (150), Expect(2) = 7e-012 Identities = 35/99 (35%), Positives = 55/99 (55%) Frame = +1 Query: 9148 YSWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY 9327 +S N+ DH + VL+ L + V K F + V +LG I+S +G + D EK+++ Sbjct: 326 FSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAI 385 Query: 9328 *SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKI 9444 +P P + SFL LA YYR F+ F++I+ P+T I Sbjct: 386 QEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDI 424 Score = 38.7 bits (88), Expect = 8.0 Identities = 47/185 (25%), Positives = 76/185 (40%), Gaps = 4/185 (2%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ* 49882 Y++ M E VA C C K + L E IP++ EM+++D + T Sbjct: 744 YYFPKMGSLAKEVVANCRVCTQAKYDRHPKKQELGETPIPSYTGEMVHIDIFS----TDR 799 Query: 49881 K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNF 49702 K ID+ +K A PV + + + + +I+ L ++ D F + Sbjct: 800 K--LFLTCIDKFSKYAIVQPVVSRTIVD--ITAPLLQIINLFPNIKTVYCDNEPAFNSET 855 Query: 49701 WRSFQKG-LGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLI---E 49534 S K G + + H ++G+ ER TL ++ R +D K S D + LI Sbjct: 856 VTSMLKNTFGIDIVNAPPLHSSSNGQVERFHSTLAEIARCLKLDKKTS--DTVELILRAT 913 Query: 49533 FAYNNHYHS 49507 YN HS Sbjct: 914 IEYNKTVHS 922 Score = 37.5 bits (85), Expect(2) = 0.006 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = +3 Query: 9525 FDFDIAFGYSCIYSVLSCIL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHF 9704 FD S I +VLS G+ I S+ L E+NY T++ EL ++V++L +F Sbjct: 475 FDLTTDASASGIGAVLSQ---EGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNF 531 Query: 9705 LYGIR-VDIFTDNKSL 9749 LYG R ++IFTD++ L Sbjct: 532 LYGSREINIFTDHQPL 547 Score = 36.0 bits (81), Expect(2) = 7e-012 Identities = 20/69 (28%), Positives = 32/69 (45%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+ ID+ + N T +YP+ I ++L+SG H++ + E D KT+F Sbjct: 218 RLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSF 277 Query: 9005 IKRYGHYLF 9031 G Y F Sbjct: 278 SVNGGKYEF 286 Score = 30.5 bits (67), Expect(2) = 0.006 Identities = 15/54 (27%), Positives = 26/54 (47%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVH 9937 N K +RW ++ + Y PGK N V +L R ++ ++ E + A +H Sbjct: 557 NAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQNL--NALQNEPQSDAATIH 608 >emb|CAA27750.1| (X04132) ORF 4 (RNA2) [Drosophila melanogaster] Length = 1237 Score = 236 bits (595), Expect = 3e-059 Identities = 141/425 (33%), Positives = 223/425 (52%), Gaps = 10/425 (2%) Frame = -2 Query: 51691 LLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDG------ 51530 L D +P++ YR ++++E++ Q++ L++ + PS S + +P+L V KK Sbjct: 309 LKDDEPVYTKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKK 368 Query: 51529 SLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKT 51350 ++ I+Y+Q+NK + +++PLPRIDD+ DQL AK FS +DL S +H++ + E T Sbjct: 369 KWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDIT 428 Query: 51349 AFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHAD 51170 +F T G Y F L FG+ A F +M F +++DD++V SE+ Sbjct: 429 SFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLK 488 Query: 51169 HLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPT 50990 +L V + L KC F++ + FLGH GI D +K + ++ + P Sbjct: 489 NLTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDAD 548 Query: 50989 EVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLN 50810 R F+ YYRRF++ FA S + RL +K F WT+ C+++F LK +L L Sbjct: 549 SARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQ 608 Query: 50809 LPEGPDGYVIYCDTSGVGLGCVLMQ----HGKVIAYASRQLRKHENNYPTHDLKLEIVVH 50642 P+ + I D S G VL Q H +AYASR K E+N T + +L + Sbjct: 609 YPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHW 668 Query: 50641 ALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVV 50462 A+ +R Y+YG H + TDH+ L Y+F + R L++Y+ + Y GK N V Sbjct: 669 AIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHV 728 Query: 50461 VDALSRKSMGSLTDV 50417 DALSR ++ L D+ Sbjct: 729 ADALSRITIKELKDI 743 Score = 80.0 bits (194), Expect(2) = 6e-014 Identities = 66/252 (26%), Positives = 110/252 (43%), Gaps = 1/252 (0%) Frame = -3 Query: 50097 GSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKI-EHQKSGGLLQEIEIPTWKWEMI 49921 G TK ++ Y+W M K I E+V +C CQ K +H K+ + E P ++ + Sbjct: 911 GITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAKTTKHTKTPMTITET--PEHAFDRV 968 Query: 49920 NMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTS 49741 +D I LP+++ + +I LTK +P+ SA+ + + +G + Sbjct: 969 VVDTIGPLPKSENGNEYAVTLICDLTKYLVAIPIANK-SAKTVAKAIFESFILKYGPMKT 1027 Query: 49740 IISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGS 49561 I+D G ++ + K L + ST H QT G ER+ +TL + +R+ I K Sbjct: 1028 FITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTD 1087 Query: 49560 WDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVGETKLIGPDMIQQVVDKV 49381 WD L + +N PYE ++GR P + KL + I + D Sbjct: 1088 WDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSNLPKHF-----NKLHSIEPIYNIDDYA 1142 Query: 49380 KLIQERLLASQSR 49342 K + RL + +R Sbjct: 1143 KESKYRLEVAYAR 1155 Score = 50.0 bits (117), Expect = 0.003 Identities = 28/93 (30%), Positives = 47/93 (50%) Frame = +1 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K F + V FLGH + +GI D +K + ++P P + F+A YYRRF+ F Sbjct: 508 KCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNF 567 Query: 9415 SSISSPLTKIT*TKVQFQ*SEGCE*RFRELNKR 9513 + S +T++ V F+ ++ C+ F L + Sbjct: 568 ADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQ 600 Score = 25.8 bits (55), Expect(2) = 6e-014 Identities = 15/53 (28%), Positives = 27/53 (50%) Frame = -1 Query: 49355 HPRVDRSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQI 49197 H ++ + D + D+E ++GD K ++R + KL +Y GPY+I Sbjct: 1163 HKEKNKENYDLKVKDIELEVGD---------KVLLRNEVGHKLDFKYTGPYKI 1206 >dbj|BAA77816.1| (AB027513) polyprotein [Tricholoma matsutake] Length = 523 Score = 235 bits (592), Expect = 6e-059 Identities = 142/387 (36%), Positives = 214/387 (54%), Gaps = 9/387 (2%) Frame = -2 Query: 51817 HDINAEAPTLQSVLV-VDEFPDVFXXXXXXXXXXXKI-EFTIDVLLDTQPIFIPPYRMAP 51644 H NA + S+L + EF DVF K + TI++ P Y ++P Sbjct: 96 HKNNAAKSSTNSLLPHLHEFEDVFSKESFDSLPARKPWDHTIELTPGATPSSCKVYPLSP 155 Query: 51643 AELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPL 51464 E +L + + + L G I+PS SP +P FV+ KDGSLQ+ +Y++LN +TVKN YPL Sbjct: 156 EEQWQLDQFIDEHLASGCIQPSKSPMASPFFFVKNKDGSLQLVQDYRRLNNITVKNCYPL 215 Query: 51463 PRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNAL 51284 P I L +QL GA+ F+K+D+ Y+ VR++E D K AF T G ++ V+ FG+TN+ Sbjct: 216 PLISKLINQLHGAQYFTKLDVHWGYNNVRIKEGDEWKAAFRTNRGLFEPLVMFFGLTNSP 275 Query: 51283 AVFMDLMNRVFKP-FLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKC 51107 A F +MN +F L+ V +++DDIL+++R EEH +R +L L+ KLY KC Sbjct: 276 ATFQTMMNNIFHDLILEGIVCIYLDDILIFTRMVEEHHRIMRLILERLRWYKLYLRQDKC 335 Query: 51106 EFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFAL 50927 EF T + +LG II + ++ K+ V W PT EV+SFL +YR F++ F+ Sbjct: 336 EFERTKIEYLGLIISEGQVEMNPIKVNGVTAWLTPTNKKEVQSFLGFINFYRCFIKDFSH 395 Query: 50926 ISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGC 50747 + PL LT K A + W NA + +F LK+ +T AP L + + + D+S +G Sbjct: 396 HARPLFDLTGKEA-WRWDNAQQEAFEKLKEMVTSAPILTFADDLRPFRVEADSSDFAMGA 454 Query: 50746 VLMQHG------KVIAYASRQLRKHENNYPTHDLKL 50657 VL Q + + S+ L E NY HD ++ Sbjct: 455 VLSQQSLEDQKWHPVVFYSKSLSAVERNYEIHDKEM 490 Score = 47.6 bits (111), Expect(2) = 9e-009 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPF-LDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFS 9234 +PA F +M+ +F L+ ++ E+H +R++L+ LR + ++ Sbjct: 274 SPATFQTMMNNIFHDLILEGIVCIYLDDILIFTRMVEEHHRIMRLILERLRWYKLYLRQD 333 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K EF + +LG IIS + ++ K+ ++ P K + SFL +YR F+ F Sbjct: 334 KCEFERTKIEYLGLIISEGQVEMNPIKVNGVTAWLTPTNKKEVQSFLGFINFYRCFIKDF 393 Query: 9415 SSISSPLTKIT 9447 S + PL +T Sbjct: 394 SHHARPLFDLT 404 Score = 40.6 bits (93), Expect(2) = 9e-009 Identities = 26/94 (27%), Positives = 43/94 (45%) Frame = +2 Query: 8774 SPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRS 8953 SP + F++ K L++ DY + NN+T K YPL I +++ Sbjct: 179 SPMASPFFFVKNKDGSLQLVQDYRRLNNITVKNCYPLPLISKLINQLHGAQYFTKLDVHW 238 Query: 8954 GCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 G + ++++E D K F G + LV+F LT Sbjct: 239 GYNNVRIKEGDEWKAAFRTNRGLFEPLVMFFGLT 272 >gb|AAA28600.1| (M38438) reverse transcriptase endonuclease [Drosophila virilis] Length = 1009 Score = 235 bits (592), Expect = 6e-059 Identities = 138/423 (32%), Positives = 233/423 (54%), Gaps = 19/423 (4%) Frame = -2 Query: 51688 LDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKK------DGS 51527 +D +P++ Y + + + ++ LL+ G IRPS SP+ +P V KK + Sbjct: 152 VDNEPVY-SRYPSLMGDSDFINKDVKQLLDDGIIRPSRSPYNSPTWVVDKKGTDSYGNPK 210 Query: 51526 LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTA 51347 ++ I++++LN+ T+ +RYP+PRI + L AK F+ +DL+S YH++ + E D KT+ Sbjct: 211 KRLVIDFRKLNEKTIPDRYPMPRIPMILANLGKAKYFTTLDLKSGYHQIYLAEHDREKTS 270 Query: 51346 FWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADH 51167 F G Y+F L FG+ NA ++F ++ + + + V+VDD++++S++E EH H Sbjct: 271 FSVSSGKYEFCRLPFGLRNASSIFQRAIDDILREHIGKICFVYVDDVIIFSKNETEHLQH 330 Query: 51166 LRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTE 50987 + VL+ L + K F+ S+ FLG I+ DG D +K++A++ + P Sbjct: 331 INIVLKCLIDANMRVGPEKTRFFKESIEFLGFIVTKDGATSDPKKVKAIQEFPEPKNVYS 390 Query: 50986 VRSFLELA*YYRRFVEKFALISAPL-----------IRLTQKAAKF*WTNACERSF*LLK 50840 VRSFL LA YYR F++ FA I+ P+ R K + +F L+ Sbjct: 391 VRSFLGLANYYRVFIKDFAAIARPISDILKGENGSVSRHVSKKIPVEFNEVQRDAFHRLR 450 Query: 50839 DKLTIAP-FLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDL 50663 L L P + + D S G+G VL Q + I SR L++ E NY T++ Sbjct: 451 SILASEDVMLMYPNFQKPFDLTTDASASGIGAVLSQGNRPITMISRALKQAEQNYATNER 510 Query: 50662 KLEIVVHALKIWRHYLYGF-HVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILY 50486 +L +V AL +++LYG ++I+TDH+ L + K + +RW + ++ + Y Sbjct: 511 ELLAIVWALGRLQNFLYGSREINIFTDHQPLTFAVSDKNTNSKIKRWKSYIDQHNAKMFY 570 Query: 50485 HLGKANVVVDALSRKSMGSLTD 50420 GK N+V DALSR+++ +L D Sbjct: 571 KPGKENLVADALSRQNINALED 592 Score = 58.9 bits (140), Expect(2) = 2e-011 Identities = 33/99 (33%), Positives = 56/99 (56%) Frame = +1 Query: 9148 YSWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY 9327 +S N+ +H + IVL+ L + V K F + + FLG I++ +G D +K+++ Sbjct: 320 FSKNETEHLQHINIVLKCLIDANMRVGPEKTRFFKESIEFLGFIVTKDGATSDPKKVKAI 379 Query: 9328 *SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKI 9444 FP P ++ SFL LA YYR F+ F++I+ P++ I Sbjct: 380 QEFPEPKNVYSVRSFLGLANYYRVFIKDFAAIARPISDI 418 Score = 39.9 bits (91), Expect = 3.5 Identities = 47/196 (23%), Positives = 78/196 (38%), Gaps = 2/196 (1%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ* 49882 Y++ M E VA C K + L E IP++ EM+++D + + Sbjct: 738 YYFPNMASLAKEVVANSRVCTKAKYDRHPKKQELGETPIPSYTGEMLHIDIFSTDKK--- 794 Query: 49881 K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNF 49702 ID+ +K A P+ + + V + +IV L +I D A F + Sbjct: 795 ---QFLTSIDKFSKFAVVQPILSRTIID--VTSPLLQIVNLFPATKTIYCDNEAAFNSET 849 Query: 49701 WRSFQKGL-GTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPL-IEFA 49528 S + + G + + H ++G+ ER TL ++ R +D K S L L Sbjct: 850 ITSMLRNVYGICIVNAAPLHSTSNGQVERFHSTLTEIARCLKLDKKISDTTELILKATIE 909 Query: 49527 YNNHYHSSIQMAPYEALY 49474 YN HS P E ++ Sbjct: 910 YNKVLHSVTLEKPIEVVH 927 Score = 38.3 bits (87), Expect(2) = 2e-011 Identities = 21/69 (30%), Positives = 33/69 (47%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+ ID+ + N T +YP+ RI ++L+SG H++ + E D KT+F Sbjct: 212 RLVIDFRKLNEKTIPDRYPMPRIPMILANLGKAKYFTTLDLKSGYHQIYLAEHDREKTSF 271 Query: 9005 IKRYGHYLF 9031 G Y F Sbjct: 272 SVSSGKYEF 280 Score = 35.6 bits (80), Expect(2) = 0.050 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = +3 Query: 9525 FDFDIAFGYSCIYSVLSCIL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHF 9704 FD S I +VLS + I S+ L E+NY T++ EL ++V++L +F Sbjct: 469 FDLTTDASASGIGAVLSQ---GNRPITMISRALKQAEQNYATNERELLAIVWALGRLQNF 525 Query: 9705 LYGIR-VDIFTDNKSL 9749 LYG R ++IFTD++ L Sbjct: 526 LYGSREINIFTDHQPL 541 Score = 29.3 bits (64), Expect(2) = 0.050 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +2 Query: 9767 KIANLKQRRWLELPKDYDMSILYHPGKANVVTHSLRR 9877 K N K +RW ++ + Y PGK N+V +L R Sbjct: 548 KNTNSKIKRWKSYIDQHNAKMFYKPGKENLVADALSR 584 >emb|CAA51084.1| (X72390) ORF2 [Drosophila subobscura] Length = 1009 Score = 233 bits (588), Expect = 2e-058 Identities = 136/423 (32%), Positives = 239/423 (56%), Gaps = 20/423 (4%) Frame = -2 Query: 51688 LDTQPIFIP-PYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKK------DG 51530 +D +P++ P M ++ + ++++ LL+ G IRPS SP+ +P V KK + Sbjct: 152 VDNEPVYSRYPSLMGVSDF--INKEVKQLLDDGIIRPSRSPYNSPTWVVDKKGTDPYGNP 209 Query: 51529 SLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKT 51350 ++ I++++LN+ T+ +RYP+P I + L AK F+ +DL+S YH++ + E D KT Sbjct: 210 KKRLVIDFRKLNEKTIPDRYPMPSIPMILASLGKAKYFTTLDLKSGYHQIYLAEHDREKT 269 Query: 51349 AFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHAD 51170 +F G Y+F L FG+ NA ++F ++ + + + V+VDD++++S++E EH Sbjct: 270 SFSVSSGKYEFCRLPFGLRNASSIFQRAIDDILREHIGKICFVYVDDVIIFSKNETEHVQ 329 Query: 51169 HLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPT 50990 H+ VL+ L + K +F+ S+ FLG I+ +G D +K++A++ + P + Sbjct: 330 HINIVLKCLLDANMRVGPEKTQFFKESIEFLGFIVTKNGATSDPKKVKAIQEFPEPKSVY 389 Query: 50989 EVRSFLELA*YYRRFVEKFALISAPLIRL-----------TQKAAKF*WTNACERSF*LL 50843 VRSFL LA YYR F++ FA I+ P+ + K + +F L Sbjct: 390 SVRSFLGLASYYRVFIKDFAAIARPISDILKGENGSVSKHVSKKIPVEFNEVQREAFLRL 449 Query: 50842 KDKLTIAP-FLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHD 50666 ++ L L P+ + + D S G+G VL Q + I SR L++ E NY T++ Sbjct: 450 RNILASEDVMLMYPDFQKPFDLTTDASASGIGAVLSQGNRPITMISRALKQAEQNYATNE 509 Query: 50665 LKLEIVVHALKIWRHYLYGF-HVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDIL 50489 +L +V AL +++LYG ++I+TDH+ L + K + +RW + ++ + Sbjct: 510 RELLAIVWALGRLQNFLYGSREINIFTDHQPLTFAVADKNTNSKIKRWKSYIDQHNAKMF 569 Query: 50488 YHLGKANVVVDALSRKSMGSLTD 50420 Y GK N+V DALSR+++ +L D Sbjct: 570 YKPGKENLVADALSRQNINALQD 592 Score = 60.1 bits (143), Expect(2) = 3e-011 Identities = 33/99 (33%), Positives = 56/99 (56%) Frame = +1 Query: 9148 YSWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY 9327 +S N+ +H + IVL+ L + V K +F + + FLG I++ G D +K+++ Sbjct: 320 FSKNETEHVQHINIVLKCLLDANMRVGPEKTQFFKESIEFLGFIVTKNGATSDPKKVKAI 379 Query: 9328 *SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKI 9444 FP P ++ SFL LA YYR F+ F++I+ P++ I Sbjct: 380 QEFPEPKSVYSVRSFLGLASYYRVFIKDFAAIARPISDI 418 Score = 44.5 bits (103), Expect = 0.14 Identities = 47/196 (23%), Positives = 78/196 (38%), Gaps = 2/196 (1%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ* 49882 Y++ M E VA C C K + L E IP++ EM+++D + Sbjct: 738 YYFPNMGNLAKEVVANCRVCTKAKYDRHPKKQELGETPIPSYTGEMLHIDIFATDKK--- 794 Query: 49881 K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNF 49702 ID+ +K A P+ + + + + +IV L +I D A F + Sbjct: 795 ---QFLTCIDKFSKFAIVQPILSRTIVD--ITGPLLQIVNLFPATKTIFCDNEAAFNSET 849 Query: 49701 WRS-FQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPL-IEFA 49528 S + G + + H ++G+ ER TL ++ R +D K S L L Sbjct: 850 ITSMLRNAYGICIVNAAPLHSTSNGQVERFHSTLTEIARCLKLDKKISDTTELILKATIE 909 Query: 49527 YNNHYHSSIQMAPYEALY 49474 YN HS + P E ++ Sbjct: 910 YNKSLHSVTREKPIEVVH 927 Score = 36.4 bits (82), Expect(2) = 3e-011 Identities = 20/69 (28%), Positives = 32/69 (45%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+ ID+ + N T +YP+ I ++L+SG H++ + E D KT+F Sbjct: 212 RLVIDFRKLNEKTIPDRYPMPSIPMILASLGKAKYFTTLDLKSGYHQIYLAEHDREKTSF 271 Query: 9005 IKRYGHYLF 9031 G Y F Sbjct: 272 SVSSGKYEF 280 Score = 36.0 bits (81), Expect(2) = 0.039 Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Frame = +3 Query: 9516 DYLFDFDIAFGYSCIYSVLSCIL*NG-KVIDYDSK*LMIYEKNYPTHDIELASLVFSLKI 9692 D+ FD+ S S + +L G + I S+ L E+NY T++ EL ++V++L Sbjct: 464 DFQKPFDLTTDASA--SGIGAVLSQGNRPITMISRALKQAEQNYATNERELLAIVWALGR 521 Query: 9693 WCHFLYGIR-VDIFTDNKSL 9749 +FLYG R ++IFTD++ L Sbjct: 522 LQNFLYGSREINIFTDHQPL 541 Score = 29.3 bits (64), Expect(2) = 0.039 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +2 Query: 9767 KIANLKQRRWLELPKDYDMSILYHPGKANVVTHSLRR 9877 K N K +RW ++ + Y PGK N+V +L R Sbjct: 548 KNTNSKIKRWKSYIDQHNAKMFYKPGKENLVADALSR 584 >gb|AAF24529.1|AC007534_10 (AC007534) F7F22.15 [Arabidopsis thaliana] Length = 1862 Score = 233 bits (588), Expect = 2e-058 Identities = 153/425 (36%), Positives = 229/425 (53%), Gaps = 27/425 (6%) Frame = -2 Query: 51667 IPPYRMAPAELKEL-KEQLRDLLEKGFIRP-STSPWGAPVLFVRKKDGSL---------- 51524 I P+R LKE+ K+++ LL+ G I P S S W +PV V KKDG + Sbjct: 959 IEPHRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWVSPVHCVPKKDGMIVVKNEKDELI 1018 Query: 51523 --------QMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVRE 51368 +M I+Y++LN + K+ +PLP ID + ++L + +D S + ++ + Sbjct: 1019 PTRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHPYYCFLDGYSGFFQIPIHP 1078 Query: 51367 ADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRS 51188 D KT F YG + ++ + FG+ NA A F M +F + V VF+DD VY S Sbjct: 1079 NDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIKEMVEVFMDDFSVYGPS 1138 Query: 51187 EEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWT 51008 +L VL + L + KC F + LGH I GI VD K+E + Sbjct: 1139 FSSCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLGHKISEKGIEVDKGKVEVMMQLQ 1198 Query: 51007 RPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLT 50828 P T ++RSFL A +YRRF++ F+ I+ PL RL K +F + + C +SF +KD L Sbjct: 1199 PPKTVKDIRSFLGHAGFYRRFIKDFSKIARPLTRLLCKETEFKFDDDCLKSFQTIKDALV 1258 Query: 50827 IAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQ----HGKVIAYASRQLRKHENNYPTHDLK 50660 AP + P + I CD S +G VL Q VI YASR L + Y T + + Sbjct: 1259 SAPVVRAPNWDYPFEIMCDASDYAVGAVLGQKIDKKLHVIYYASRTLDDAQGRYATTEKE 1318 Query: 50659 LEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 L VV A + +R YL G V +YTDH +L++++ +K+ R RW+ LL+++D++I+ Sbjct: 1319 LLAVVFAFEKFRSYLVGSKVTVYTDHAALRHLYAKKDTKPRLLRWILLLQEFDMEIVDKK 1378 Query: 50479 GKANVVVDALSRKSMGS---LTDVQPEMREMV 50393 G N D LSR + + D PE + MV Sbjct: 1379 GIENGAADHLSRMRIEEPLLIDDSMPEEQLMV 1410 Score = 81.1 bits (197), Expect = 1e-012 Identities = 54/208 (25%), Positives = 101/208 (47%), Gaps = 3/208 (1%) Frame = -3 Query: 50073 LRCLYWWDGMKKDIAEFVAQCSNCQ*---VKIEHQKSGGLLQEIEIPTWKWEMINMDFIT 49903 L+ +WW M KD EFV++C +CQ + ++ + E+EI +++ +DF+ Sbjct: 1518 LQAGFWWPTMFKDAQEFVSKCDSCQRKGNISRRNEMPQNPILEVEI----FDVWGIDFMG 1573 Query: 49902 GLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRG 49723 P + I V +D ++K + T A+ ++L+ I GVP +ISD G Sbjct: 1574 PFPSSYGN-KYILVAVDYVSKWVEAI-ASPTNDAKVVLKLFKTIIFPRFGVPRVVISDGG 1631 Query: 49722 AQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLP 49543 F + + K G + ++T ++PQT G+ E + + ++ +L ++ + W L Sbjct: 1632 KHFINKVFENLLKKHGVKHKVATPYNPQTSGQVEISNREIKTILEKTVGITRKDWSAKLD 1691 Query: 49542 LIEFAYNNHYHSSIQMAPYEALYGRKCRSPI 49450 +AY + + I P+ LYG+ C P+ Sbjct: 1692 DALWAYRTTFKTPIGTTPFNLLYGKSCHLPV 1722 Score = 67.9 bits (163), Expect(2) = 3e-011 Identities = 49/175 (28%), Positives = 73/175 (41%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M +F + Y + +L VL + + K Sbjct: 1105 APATFQRCMTSIFSDLIKEMVEVFMDDFSVYGPSFSSCLLNLGRVLTRCEETNLVLNWEK 1164 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F +K + LGH IS +GI VDK K+E P K+I SFL A +YRRF+ FS Sbjct: 1165 CHFMVKEGIVLGHKISEKGIEVDKGKVEVMMQLQPPKTVKDIRSFLGHAGFYRRFIKDFS 1224 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 I+ PLT++ + +F+ + C F+ + + F + C AS Sbjct: 1225 KIARPLTRLLCKETEFKFDDDCLKSFQTIKDALVSAPVVRAPNWDYPFEIMCDAS 1279 Score = 28.6 bits (62), Expect(2) = 3e-011 Identities = 18/69 (26%), Positives = 29/69 (41%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+CIDY + N + K +PL I ++ SG ++ + D KT F Sbjct: 1027 RMCIDYRKLNAASRKDHFPLPFIDQMLERLANHPYYCFLDGYSGFFQIPIHPNDQEKTTF 1086 Query: 9005 IKRYGHYLF 9031 YG + + Sbjct: 1087 TCPYGTFAY 1095 >dbj|BAB10790.1| (AB028613) retroelement pol polyprotein-like [Arabidopsis thaliana] Length = 1864 Score = 230 bits (580), Expect = 2e-057 Identities = 149/432 (34%), Positives = 233/432 (53%), Gaps = 25/432 (5%) Frame = -2 Query: 51667 IPPYRMAPAELKEL-KEQLRDLLEKGFIRP-STSPWGAPVLFVRKKDGSL---------- 51524 I P R LKE+ K+++ LL+ G I P S S W +PV +V KK G Sbjct: 960 IEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWVSPVHYVPKKGGMTVVKNSKDELI 1019 Query: 51523 --------QMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVRE 51368 +M I+Y++LN + K+ +PLP ID + ++L + +D S + ++ + Sbjct: 1020 PTRTTTGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHPYYCFLDGYSGFFQIPIHP 1079 Query: 51367 ADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRS 51188 D KT F YG + ++ + FG+ NA A F M +F ++ V VF+DD VY S Sbjct: 1080 NDQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSS 1139 Query: 51187 EEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWT 51008 +L VL+ + L + KC F + LGH I +GI VD K++ + Sbjct: 1140 FSSCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLGHKISEEGIEVDKAKVDVMMQLQ 1199 Query: 51007 RPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLT 50828 P T ++RSFL A +YRRF++ F+ ++ PL RL K +F + + C +F L+K+ L Sbjct: 1200 PPKTVKDIRSFLGHAGFYRRFIKDFSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALI 1259 Query: 50827 IAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQH----GKVIAYASRQLRKHENNYPTHDLK 50660 AP + P + I C+ S +G VL Q VI YASR + + Y T + + Sbjct: 1260 TAPIVQAPNWDFPFEIMCNASDYAVGAVLGQRIDKKLHVIYYASRTMDDAQVRYATTEKE 1319 Query: 50659 LEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHL 50480 L VV A + +R YL G V +YTDH +L++I+ +K+ R RW+ LL+++D++I+ Sbjct: 1320 LLAVVFAFEKFRSYLVGSKVTVYTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEIVDKK 1379 Query: 50479 GKANVVVDALSRKSMGSLTDVQPEM-REMVRDIQRLS 50372 G N V D LSR + + M E + IQ+L+ Sbjct: 1380 GIENGVADHLSRMRIEDEVPIDDSMPEEQLMAIQQLN 1416 Score = 82.7 bits (201), Expect = 4e-013 Identities = 54/208 (25%), Positives = 99/208 (46%), Gaps = 3/208 (1%) Frame = -3 Query: 50073 LRCLYWWDGMKKDIAEFVAQCSNCQ*---VKIEHQKSGGLLQEIEIPTWKWEMINMDFIT 49903 L+ +WW M KD EF+++C +CQ + ++ + E+EI +++ +DF+ Sbjct: 1520 LQAGFWWPSMFKDAQEFISKCDSCQRRGNISRRNEMPQNPILEVEI----FDVWGIDFMG 1575 Query: 49902 GLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRG 49723 P + I V +D ++K + T A ++L+ I GVP +ISD G Sbjct: 1576 PFPSSYGN-KYILVAVDYVSKWVEAI-ASPTNDARVVLKLFKTIIFPRFGVPRIMISDGG 1633 Query: 49722 AQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLP 49543 F + + K G + ++T +HPQT G+ E + + ++ +L + + W L Sbjct: 1634 KHFINKVFENLLKKHGVKHKVATPYHPQTSGQVEISNREIKAILEKIVGSTRKDWSAKLD 1693 Query: 49542 LIEFAYNNHYHSSIQMAPYEALYGRKCRSPI 49450 +AY + + I P+ LYG+ C P+ Sbjct: 1694 DALWAYRTAFKTPIGTTPFNLLYGKSCHLPV 1724 Score = 67.5 bits (162), Expect(2) = 4e-011 Identities = 47/175 (26%), Positives = 75/175 (42%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M +F ++ Y + +L VL+ + + K Sbjct: 1106 APATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEK 1165 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F ++ + LGH IS EGI VDK K++ P K+I SFL A +YRRF+ FS Sbjct: 1166 CHFMVREGIVLGHKISEEGIEVDKAKVDVMMQLQPPKTVKDIRSFLGHAGFYRRFIKDFS 1225 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 ++ PLT++ + +F + C F+ + + F + C+AS Sbjct: 1226 KLARPLTRLLCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPFEIMCNAS 1280 Score = 28.6 bits (62), Expect(2) = 4e-011 Identities = 18/69 (26%), Positives = 29/69 (41%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+CIDY + N + K +PL I ++ SG ++ + D KT F Sbjct: 1028 RMCIDYRKLNAASRKDHFPLPFIDQMLERLANHPYYCFLDGYSGFFQIPIHPNDQEKTTF 1087 Query: 9005 IKRYGHYLF 9031 YG + + Sbjct: 1088 TCPYGTFAY 1096 >gb|AAB50148.1| (U89994) reverse transcriptase polyprotein [Drosophila melanogaster] Length = 1041 Score = 228 bits (576), Expect = 5e-057 Identities = 144/422 (34%), Positives = 241/422 (56%), Gaps = 21/422 (4%) Frame = -2 Query: 51685 DTQPIF--IPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKK------DG 51530 D QPI+ + PY M ++ + ++ LL+ G IRPS+SP+ PV V KK + Sbjct: 184 DDQPIYSKLYPYPMGVSDF--VNKETHALLKDGIIRPSSSPYNNPVWVVDKKGTDEEGNT 241 Query: 51529 SLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKT 51350 ++ I++++LN T+ ++YP+P + + L A+ F+ +DL+S++H++ + E D KT Sbjct: 242 KKRLVIDFRKLNLKTIDDKYPIPNVVWILSNLGKARFFTTLDLKSAFHQILLAEKDRAKT 301 Query: 51349 AFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHAD 51170 AF G Y+F L FG+ NA ++F ++ V + + V+VDD++++S E+H + Sbjct: 302 AFSVGNGKYEFCRLPFGLKNAPSIFQRAIDDVVRDRIGKSCYVYVDDVIIFSNGIEDHVN 361 Query: 51169 HLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPT 50990 + VL L + K F+ S+ +LG ++ + GI K+EA++ + +PT Sbjct: 362 DVAWVLDRLSGANMRVSKEKSFFFKESVEYLGFMVSSGGITTSPSKVEAIQKYNQPTNLF 421 Query: 50989 EVRSFLELA*YYRRFVEKFALISAPLI--------RLTQKAAKF*WTNACER---SF*LL 50843 VRSFL LA YYR F++ FA I+ PL +++ +K + ER +F L Sbjct: 422 SVRSFLGLASYYRCFIKDFASIARPLTDILKGENGKVSASQSKKIPISFDERQCSAFEKL 481 Query: 50842 KDKLTIAPFLNL-PEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHD 50666 K+ L + L P+ + + D S GLG VL Q GK + SR L+ E N+ T++ Sbjct: 482 KNVLVSENVMLLYPDYRKAFDLTTDASAFGLGAVLSQDGKPVTMISRTLQDRELNFATNE 541 Query: 50665 LKLEIVVHALKIWRHYLYGF-HVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDIL 50489 +L +V ALK R+YLYG +++I+TDH+ L Y + + +RW + +++ I Sbjct: 542 RELLAIVWALKSLRNYLYGVKNLNIFTDHQPLTYAVSDRNPNAKIKRWKAFIDEHNAKIF 601 Query: 50488 YHLGKANVVVDALSRKSMGSLTD 50420 Y GK V DALSR+++ L D Sbjct: 602 YKPGKETYVADALSRQAIHVLED 624 Score = 57.8 bits (137), Expect = 1e-005 Identities = 35/94 (37%), Positives = 50/94 (52%) Frame = +1 Query: 9163 EDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPR 9342 EDH +D+ VL L V K F + V +LG ++S GI K+E+ + + Sbjct: 357 EDHVNDVAWVLDRLSGANMRVSKEKSFFFKESVEYLGFMVSSGGITTSPSKVEAIQKYNQ 416 Query: 9343 PIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKI 9444 P ++ SFL LA YYR F+ F+SI+ PLT I Sbjct: 417 PTNLFSVRSFLGLASYYRCFIKDFASIARPLTDI 450 Score = 41.4 bits (95), Expect(2) = 0.003 Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 6/80 (7%) Frame = +3 Query: 9516 DYLFDFDI-----AFGYSCIYSVLSCIL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVF 9680 DY FD+ AFG + S +GK + S+ L E N+ T++ EL ++V+ Sbjct: 496 DYRKAFDLTTDASAFGLGAVLSQ------DGKPVTMISRTLQDRELNFATNERELLAIVW 549 Query: 9681 SLKIWCHFLYGIR-VDIFTDNKSL*Y 9755 +LK ++LYG++ ++IFTD++ L Y Sbjct: 550 ALKSLRNYLYGVKNLNIFTDHQPLTY 575 Score = 27.8 bits (60), Expect(2) = 0.003 Identities = 12/34 (35%), Positives = 17/34 (49%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRR 9877 N K +RW +++ I Y PGK V +L R Sbjct: 583 NAKIKRWKAFIDEHNAKIFYKPGKETYVADALSR 616 >dbj|BAA92424.1| (AB039862) pol (reverse transcriptase-RNase H) [Tricholoma nauseosum] Length = 326 Score = 228 bits (575), Expect = 6e-057 Identities = 126/318 (39%), Positives = 185/318 (57%), Gaps = 8/318 (2%) Frame = -2 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 N +PLP I ++ D++ AK F+K+DL+ Y+ VR+++ D K AF G ++ V+ FG Sbjct: 1 NAHPLPLISEIIDKVGKAKVFTKLDLQWGYNNVRIKKGDEWKAAFAMHQGSFELLVMFFG 60 Query: 51298 MTNALAVFMDLMNRVFKPFLDM-FVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYA 51122 MTN+ F ++MN +FK +D VI+F+DDIL+++ EE H ++ VLR L L+ Sbjct: 61 MTNSPPTFHNMMNDIFKDVIDKGVVIIFIDDILIFTEDEENHEAIVQEVLRRLAENDLFL 120 Query: 51121 MFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFV 50942 KC F + + FLG +IG DGI++D K++A+ W PT EV++FL LA YYRRFV Sbjct: 121 KPEKCVFGASEIEFLGLLIGPDGIKMDPIKVQAITDWPAPTRVKEVQAFLGLANYYRRFV 180 Query: 50941 EKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSG 50762 F+ I+APL LT+K + W + +F LK K P L + + D S Sbjct: 181 HNFSKIAAPLHNLTRKGVVWRWGEQQQTAFEELKRKFVEGPILAPVDFTHPLRVESDASN 240 Query: 50761 VGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYG--FH 50603 G VL K AY S+ L E NY HD ++ ++ AL++WRHYL G Sbjct: 241 FATGVVLSMLCKDDKWHPCAYLSKGLNDVERNYDVHDKEMLGIIRALEVWRHYLEGCMHQ 300 Query: 50602 VDIYTDHKSLQYIFKQKELYLRQRRW 50525 ++I+ DH++LQY K+L RQ RW Sbjct: 301 IEIWMDHQNLQYFMSAKKLNHRQARW 326 Score = 72.2 bits (174), Expect = 7e-010 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 1/152 (0%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDL-FXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFS 9234 +P F +M+ +FK +D ++ ++E+H + ++ VL+ L + +K Sbjct: 64 SPPTFHNMMNDIFKDVIDKGVVIIFIDDILIFTEDEENHEAIVQEVLRRLAENDLFLKPE 123 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K F + FLG +I +GI++D K+++ +P P K + +FL LA YYRRFV F Sbjct: 124 KCVFGASEIEFLGLLIGPDGIKMDPIKVQAITDWPAPTRVKEVQAFLGLANYYRRFVHNF 183 Query: 9415 SSISSPLTKIT*TKVQFQ*SEGCE*RFRELNKR 9513 S I++PL +T V ++ E + F EL ++ Sbjct: 184 SKIAAPLHNLTRKGVVWRWGEQQQTAFEELKRK 216 Score = 41.8 bits (96), Expect = 0.92 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Frame = +3 Query: 9606 YDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL*YVFTLK 9770 Y SK L E+NY HD E+ ++ +L++W H+L G +++I+ D+++L Y + K Sbjct: 261 YLSKGLNDVERNYDVHDKEMLGIIRALEVWRHYLEGCMHQIEIWMDHQNLQYFMSAK 317 >gb|AAA28035.1| (L23646) homology with S. pombe protease; putative [Caenorhabditis elegans] Length = 1745 Score = 226 bits (569), Expect = 3e-056 Identities = 146/444 (32%), Positives = 229/444 (50%), Gaps = 12/444 (2%) Frame = -2 Query: 51775 VVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELK-ELKEQLRDLLE 51599 V+++F DVF E I++ +PI P R P LK E+++ ++ +L Sbjct: 627 VIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKP-RPIPLALKPEIRKMIQKMLN 685 Query: 51598 KGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKC 51419 + IR S SPW +PV+ V+KKDGS++M I+Y+++NKV N +PLP I+ L G K Sbjct: 686 QKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKL 745 Query: 51418 FSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFL 51239 ++ D+ + + ++ + E TAF +++ VL FG+ + A+F M + L Sbjct: 746 YTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLL 805 Query: 51238 DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGA 51059 + V+VDD+L+ S+ E+H ++ L ++ + SKC + +LGH + Sbjct: 806 GVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTL 865 Query: 51058 DGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF* 50879 DG V+TQ+ SFL L YYR+F+ FA I++ L L + Sbjct: 866 DG--VETQE-----------------SFLGLVGYYRKFILNFAQIASSLTSLISAKVAWI 906 Query: 50878 WTNACERSF*LLKDKLTIAPFLNLPE------GPDGYVIYCDTSGVGLGCVLMQHG---- 50729 W E +F LK + P L P+ G ++IY D S G+G VL Q G Sbjct: 907 WEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQ 966 Query: 50728 -KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQK 50552 IA+AS+ L E Y DL+ ++ AL+ ++ +YG + ++TDHK L + K Sbjct: 967 QHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPLISLLKGS 1026 Query: 50551 ELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 L R RW + ++DV I+Y GKAN V DALSR Sbjct: 1027 PLADRLWRWSIEILEFDVKIVYLAGKANAVADALSR 1062 Score = 57.8 bits (137), Expect = 1e-005 Identities = 52/235 (22%), Positives = 101/235 (42%), Gaps = 2/235 (0%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 ++R ++ E H + + G KM+ + ++W M+ + V C+ C +H K Sbjct: 1162 KIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCAN-DHSK 1220 Query: 49974 SGGLLQEIEIPTWKWEMINMDFI-TGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAE 49798 L + T+ E++ D + GL + I IID TK +P+ AE Sbjct: 1221 LTSSLTPYRM-TFPLEIVACDLMDVGLSVQGNR--YILTIIDLFTKYGTAVPIPDK-KAE 1276 Query: 49797 DYVRLYVREIVRLHG-VPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSE 49621 ++ +V G +P +++D+G +F + F L + + ++ + +G E Sbjct: 1277 TVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVE 1336 Query: 49620 RTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPI 49450 R +T+ +++ WDD + +AYNN H + P ++GR P+ Sbjct: 1337 RFNKTIMHIMKKKTA-VPMEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPL 1392 Score = 51.9 bits (122), Expect = 8e-004 Identities = 40/152 (26%), Positives = 63/152 (41%) Frame = +1 Query: 9055 IAPAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFS 9234 I+PA F M + L + S + E H D++ L +R ++ S Sbjct: 788 ISPALFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRAS 847 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K K V +LGH ++ +G+ + SFL L YYR+F+ F Sbjct: 848 KCHIAKKEVEYLGHKVTLDGVETQE-------------------SFLGLVGYYRKFILNF 888 Query: 9415 SSISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 + I+S LT + KV + + E F+EL K Sbjct: 889 AQIASSLTSLISAKVAWIWEKEQEIAFQELKK 920 Score = 39.9 bits (91), Expect = 3.5 Identities = 18/51 (35%), Positives = 30/51 (58%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRI 8893 M ++ I ++ SPW + V+ ++KK +R+CIDY + N V +PL I Sbjct: 683 MLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNI 733 Score = 34.4 bits (77), Expect(2) = 0.48 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL 9749 I + SK L E Y D+E +++F+L+ + +YG + +FTD+K L Sbjct: 970 IAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDHKPL 1019 Score = 27.0 bits (58), Expect(2) = 0.48 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +2 Query: 9791 RWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEE 9919 RW ++D+ I+Y GKAN V +L R GC E+E+ Sbjct: 1034 RWSIEILEFDVKIVYLAGKANAVADALSR--GGCPPNELEEEQ 1074 >dbj|BAA22787.1| (AB007466) reverse transcriptase-like protein [Vicia faba] Length = 407 Score = 224 bits (565), Expect = 9e-056 Identities = 135/385 (35%), Positives = 203/385 (52%), Gaps = 4/385 (1%) Frame = -2 Query: 51514 IEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTR 51335 I+Y++LN T K+ +PLP ID + ++L + + +D S Y+++ V D KT F Sbjct: 3 IDYRRLNLATRKDHFPLPFIDQMLERLADHEYYCFLDGYSGYNQIAVVPEDQEKTTFTCP 62 Query: 51334 YGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTV 51155 +G + +R + FG+ NA A F M +F L+ ++ VF+DD V+ +S + +L V Sbjct: 63 FGIFSYRRIPFGLCNAPATFQRCMQSIFADMLEKYMEVFMDDFSVFGKSFDNCLSNLALV 122 Query: 51154 LRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSF 50975 L Q L + KC F + LGH I GI VD KIE + PT +RSF Sbjct: 123 LERCQESNLILNWEKCHFMVREGIVLGHKISYKGIEVDQAKIEVISKLHPPTNEKGIRSF 182 Query: 50974 LELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGP 50795 L +YRRF+ F+ I PL L K F + C +F LK KL AP + P+ Sbjct: 183 LGHVGFYRRFIRDFSKIEKPLTTLLVKDKDFVFDKECVVAFETLKGKLVSAPIVVAPDWY 242 Query: 50794 DGYVIYCDTSGVGLGCVLMQHGK----VIAYASRQLRKHENNYPTHDLKLEIVVHALKIW 50627 + I CD S + +G VL Q + VI YAS L + NY T + +L ++V+A + Sbjct: 243 LPFEIMCDASDIAVGAVLGQRREKRLHVIYYASHVLNPAQMNYATTEKELLVMVYAFDKF 302 Query: 50626 RHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALS 50447 R Y+ G V +YTDH +L+Y+F +++ R RW+ LL+++DV+I G N V D LS Sbjct: 303 RQYMLGSKVIVYTDHAALKYLFSKQDSKPRLLRWILLLQEFDVEIRDKRGCENTVADHLS 362 Query: 50446 RKSMGSLTDVQPEMREMVRDIQRLSSLGV 50360 R S T V+ +++ D L +GV Sbjct: 363 RMSHIEETKVKQPIKDEFADEHILVVIGV 391 Score = 68.3 bits (164), Expect(3) = 9e-015 Identities = 49/175 (28%), Positives = 73/175 (41%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M +F L+ + + + ++ S+L +VL+ + + + K Sbjct: 78 APATFQRCMQSIFADMLEKYMEVFMDDFSVFGKSFDNCLSNLALVLERCQESNLILNWEK 137 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F ++ + LGH IS +GI VD+ KIE P K I SFL +YRRF+ FS Sbjct: 138 CHFMVREGIVLGHKISYKGIEVDQAKIEVISKLHPPTNEKGIRSFLGHVGFYRRFIRDFS 197 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 I PLT + F + C F L + F + C AS Sbjct: 198 KIEKPLTTLLVKDKDFVFDKECVVAFETLKGKLVSAPIVVAPDWYLPFEIMCDAS 252 Score = 33.6 bits (75), Expect(3) = 9e-015 Identities = 18/56 (32%), Positives = 33/56 (58%) Frame = +3 Query: 9597 VIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL*YVFT 9764 VI Y S L + NY T + EL +V++ + ++ G +V ++TD+ +L Y+F+ Sbjct: 270 VIYYASHVLNPAQMNYATTEKELLVMVYAFDKFRQYMLGSKVIVYTDHAALKYLFS 325 Score = 26.2 bits (56), Expect(3) = 9e-015 Identities = 18/68 (26%), Positives = 29/68 (42%) Frame = +2 Query: 8828 ICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFI 9007 +CIDY + N T K +PL I ++ SG +++ V D KT F Sbjct: 1 VCIDYRRLNLATRKDHFPLPFIDQMLERLADHEYYCFLDGYSGYNQIAVVPEDQEKTTFT 60 Query: 9008 KRYGHYLF 9031 +G + + Sbjct: 61 CPFGIFSY 68 >emb|CAA32198.1| (X14037) polyprotein [Drosophila melanogaster] Length = 1053 Score = 222 bits (560), Expect = 4e-055 Identities = 134/425 (31%), Positives = 229/425 (53%), Gaps = 4/425 (0%) Frame = -2 Query: 51709 EFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDG 51530 E I ++ T+ + PYR++P E + ++ Q+ +L+ +RPS SP+ +P+L V+KK+G Sbjct: 446 EMKIRLIDPTKTVQRRPYRLSPEEREVVRMQVSELIRCNIVRPSCSPFASPMLLVKKKNG 505 Query: 51529 SLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKT 51350 + ++ +++++LN T+ ++YPLP I D +L+GA F+ +D+ S +H++ + + T Sbjct: 506 TDRLCVDFRELNSNTISDKYPLPLISDQIARLRGANYFTCLDMASGFHQIPIHPESVEYT 565 Query: 51349 AFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHAD 51170 AF + G+ NA +VF + + FVIV++DDI+V S ++E + Sbjct: 566 AF-----------VPDGLKNAPSVFQRTVINALGDLANSFVIVYMDDIMVVSPTKELALE 614 Query: 51169 HLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPT 50990 L+TVL VL +KC F T++ +LG+ + A IR + +KI ++ + P T + Sbjct: 615 RLKTVLNVLTKAGFTFNLAKCSFLKTTVQYLGYEVRAGEIRPNVRKIASLSSLPPPQTVS 674 Query: 50989 EVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLN 50810 VR F+ LA Y+R+FV F+ + PL L+ + K W+ E + LT P L Sbjct: 675 GVRQFIGLASYFRKFVSGFSQLMKPLYSLSSGSGKITWSAELEEIRLKVVTILTNEPALV 734 Query: 50809 LPEGPDGYVIYCDTSGVGLGCVLMQH----GKVIAYASRQLRKHENNYPTHDLKLEIVVH 50642 + + ++ D S G G +L+ VI Y S+ E+ Y +++L+ VV Sbjct: 735 IFDPQYPIELHTDASACGYGAILLHRIESKPHVIEYFSKTTTSVESRYHSYELETLAVVK 794 Query: 50641 ALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVV 50462 A+K +RHYL G +YTD SL+ + +L R RW L+ ++ +I Y GK Sbjct: 795 AVKHFRHYLIGREFVVYTDCNSLKASRTKIDLTPRVHRWWAYLQSFNFEIQYREGKRMAH 854 Query: 50461 VDALSRKSM 50435 VD LSR + Sbjct: 855 VDFLSRNPL 863 Score = 46.1 bits (107), Expect(2) = 3e-008 Identities = 35/130 (26%), Positives = 51/130 (38%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ F + + F S KE L+ VL L +K Sbjct: 575 APSVFQRTVINALGDLANSFVIVYMDDIMVVSPTKELALERLKTVLNVLTKAGFTFNLAK 634 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F V +LG+ + IR + KI S S P P + F+ LA Y+R+FV FS Sbjct: 635 CSFLKTTVQYLGYEVRAGEIRPNVRKIASLSSLPPPQTVSGVRQFIGLASYFRKFVSGFS 694 Query: 9418 SISSPLTKIT 9447 + PL ++ Sbjct: 695 QLMKPLYSLS 704 Score = 40.2 bits (92), Expect(2) = 3e-008 Identities = 21/78 (26%), Positives = 38/78 (47%) Frame = +2 Query: 8774 SPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRS 8953 SP+ + +L ++KK R+C+D+ + N+ T KYPL I +++ S Sbjct: 491 SPFASPMLLVKKKNGTDRLCVDFRELNSNTISDKYPLPLISDQIARLRGANYFTCLDMAS 550 Query: 8954 GCHKMKVRECDVPKTNFI 9007 G H++ + V T F+ Sbjct: 551 GFHQIPIHPESVEYTAFV 568 >gb|AAF24531.1|AC007534_12 (AC007534) F7F22.17 [Arabidopsis thaliana] Length = 1799 Score = 221 bits (558), Expect = 6e-055 Identities = 147/425 (34%), Positives = 224/425 (52%), Gaps = 26/425 (6%) Frame = -2 Query: 51667 IPPYRMAPAELKEL-KEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSL----------- 51524 I P R LKE+ K+++ LL+ G I P + P KKDG Sbjct: 951 IEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDMHCVP-----KKDGMTVVKNEKDELIP 1005 Query: 51523 -------QMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREA 51365 +M I+Y++LN + K+ +PLP ID + ++L + +D + + ++ + Sbjct: 1006 TRTITGHRMCIDYRKLNAASRKDHFPLPFIDQMLERLANHPYYCFLDGYNGFFQIPIHPN 1065 Query: 51364 DIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSE 51185 D KT F YG + ++ + FG+ NA A F M +F ++ V VF+DD VY S Sbjct: 1066 DQEKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGPSF 1125 Query: 51184 EEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTR 51005 +L VL + L + KC F + LGH I GI VD K+E + Sbjct: 1126 SSCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIVLGHKISEKGIEVDKGKVEVMMQLQP 1185 Query: 51004 PTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTI 50825 P T ++RSFL A +YRRF++ F+ I+ PL RL K +F + + C +SF +KD L Sbjct: 1186 PKTVKDIRSFLGHAGFYRRFIKDFSKIARPLTRLLCKETEFKFDDDCLKSFQTIKDALVS 1245 Query: 50824 APFLNLPEGPDGYVIYCDTSGVGLGCVLMQ----HGKVIAYASRQLRKHENNYPTHDLKL 50657 AP + P + I CD S +G VL Q VI YASR L + Y T + +L Sbjct: 1246 APVVRAPNWDYPFEIMCDASDYAVGAVLGQKIDKKLHVIYYASRTLDDAQGRYATTEKEL 1305 Query: 50656 EIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLG 50477 +VV A + +R YL G V +YTDH +L++++ +K+ R RW+ LL+++D++I+ G Sbjct: 1306 LVVVFAFEKFRSYLVGSKVTVYTDHAALRHLYAKKDTKPRLLRWILLLQEFDMEIVDKKG 1365 Query: 50476 KANVVVDALSRKSMGS---LTDVQPEMREMV 50393 N D LSR + + D PE + MV Sbjct: 1366 IENGAADHLSRMRIEEPLLIDDSMPEEQLMV 1396 Score = 81.1 bits (197), Expect = 1e-012 Identities = 54/208 (25%), Positives = 101/208 (47%), Gaps = 3/208 (1%) Frame = -3 Query: 50073 LRCLYWWDGMKKDIAEFVAQCSNCQ*---VKIEHQKSGGLLQEIEIPTWKWEMINMDFIT 49903 L+ +WW M KD EFV++C +CQ + ++ + E+EI +++ +DF+ Sbjct: 1455 LQAGFWWPTMFKDAQEFVSKCDSCQRKGNISRRNEMPQNPILEVEI----FDVWGIDFMG 1510 Query: 49902 GLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRG 49723 P + I V +D ++K + T A+ ++L+ I GVP +ISD G Sbjct: 1511 PFPSSYGN-KYILVAVDYVSKWVEAI-ASPTNDAKVVLKLFKTIIFPRFGVPRVVISDGG 1568 Query: 49722 AQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLP 49543 F + + K G + ++T ++PQT G+ E + + ++ +L ++ + W L Sbjct: 1569 KHFINKVFENLLKKHGVKHKVATPYNPQTSGQVEISNREIKTILEKTVGITRKDWSAKLD 1628 Query: 49542 LIEFAYNNHYHSSIQMAPYEALYGRKCRSPI 49450 +AY + + I P+ LYG+ C P+ Sbjct: 1629 DALWAYRTAFKTPIGTTPFNLLYGKSCHLPV 1659 Score = 69.1 bits (166), Expect(2) = 3e-011 Identities = 49/175 (28%), Positives = 74/175 (42%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M +F ++ Y + +L VL + + K Sbjct: 1091 APATFQRCMTSIFSDLIEEMVEVFMDDFSVYGPSFSSCLLNLGRVLTRCEETNLVLNWEK 1150 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F +K + LGH IS +GI VDK K+E P K+I SFL A +YRRF+ FS Sbjct: 1151 CHFMVKEGIVLGHKISEKGIEVDKGKVEVMMQLQPPKTVKDIRSFLGHAGFYRRFIKDFS 1210 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 I+ PLT++ + +F+ + C F+ + + F + C AS Sbjct: 1211 KIARPLTRLLCKETEFKFDDDCLKSFQTIKDALVSAPVVRAPNWDYPFEIMCDAS 1265 Score = 27.4 bits (59), Expect(2) = 3e-011 Identities = 17/69 (24%), Positives = 29/69 (41%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+CIDY + N + K +PL I ++ +G ++ + D KT F Sbjct: 1013 RMCIDYRKLNAASRKDHFPLPFIDQMLERLANHPYYCFLDGYNGFFQIPIHPNDQEKTTF 1072 Query: 9005 IKRYGHYLF 9031 YG + + Sbjct: 1073 TCPYGTFAY 1081 >dbj|BAA92706.1| (AB036888) reverse transcriptase [Tricholoma sejunctum] Length = 327 Score = 218 bits (549), Expect = 7e-054 Identities = 124/318 (38%), Positives = 187/318 (57%), Gaps = 9/318 (2%) Frame = -2 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 NRY LP I +L +QL+GAK F+K+D+R Y+ V ++E D K AF T +G ++ V+ FG Sbjct: 1 NRYSLPLILELVNQLRGAKYFTKLDVRWGYNNVCMKEGDEWKAAFRTNHGLFEPLVMFFG 60 Query: 51298 MTNALAVFMDLMNRVFKPFL-DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYA 51122 +TN+ + F +MN +F + + V +++DDIL++S++ EE +R VL L+ KLY Sbjct: 61 LTNSPSTFQTMMNDIFHDLIMEGVVCIYLDDILIFSKTLEEQHQVMRIVLERLRKHKLYL 120 Query: 51121 MFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFV 50942 KCEF TS+ +LG II IR+D K+ V W T EV+SFL A +YRRF+ Sbjct: 121 QHDKCEFERTSIKYLGLIISEGKIRMDPVKVAGVAEWPTLTKKKEVQSFLGFANFYRRFI 180 Query: 50941 EKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSG 50762 E F+ + PL T+K K+ W + + +F LK +T +P L + I D+S Sbjct: 181 EGFSHHTKPLFEPTKKDRKWSWNSEEQEAFNELKGCITSSPILRFANDLKAFRIEADSSD 240 Query: 50761 VGLGCVLMQHG------KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYG--F 50606 +G VL Q +A+ S+ L + NY HD ++ V+ AL+ WRH+L G Sbjct: 241 FVMGAVLSQQSTDDLKWHPVAFYSKSLNVVKRNYEIHDKEMLTVMRALEEWRHFLEGARH 300 Query: 50605 HVDIYTDHKSLQYIFKQKELYLRQRRW 50525 ++I+TDHK+L+Y K+L RQ W Sbjct: 301 KIEIWTDHKNLEYFMTAKKLNCRQAHW 327 Score = 56.6 bits (134), Expect = 3e-005 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFL-DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFS 9234 +P+ F +M+ +F + + +S E+ +RIVL+ LR + ++ Sbjct: 64 SPSTFQTMMNDIFHDLIMEGVVCIYLDDILIFSKTLEEQHQVMRIVLERLRKHKLYLQHD 123 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K EF + +LG IIS IR+D K+ +P K + SFL A +YRRF++ F Sbjct: 124 KCEFERTSIKYLGLIISEGKIRMDPVKVAGVAEWPTLTKKKEVQSFLGFANFYRRFIEGF 183 Query: 9415 SSISSPLTKIT 9447 S + PL + T Sbjct: 184 SHHTKPLFEPT 194 Score = 46.5 bits (108), Expect = 0.036 Identities = 23/57 (40%), Positives = 39/57 (68%), Gaps = 2/57 (3%) Frame = +3 Query: 9600 IDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIR--VDIFTDNKSL*YVFTLK 9770 + + SK L + ++NY HD E+ +++ +L+ W HFL G R ++I+TD+K+L Y T K Sbjct: 260 VAFYSKSLNVVKRNYEIHDKEMLTVMRALEEWRHFLEGARHKIEIWTDHKNLEYFMTAK 318 >dbj|BAA92425.1| (AB039863) pol (reverse transcriptase-RNase H) [Tricholoma magnivelare] Length = 326 Score = 217 bits (546), Expect = 2e-053 Identities = 124/318 (38%), Positives = 180/318 (55%), Gaps = 8/318 (2%) Frame = -2 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 N +PLP I ++ D++ AK F+K+DLR Y+ VR+++ D K AF T G ++ V+ F Sbjct: 1 NAHPLPLISEIIDKVGKAKVFTKLDLRWGYNNVRIKKGDEWKAAFPTCRGSFEPLVMFFR 60 Query: 51298 MTNALAVFMDLMNRVFKPFLDM-FVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYA 51122 MTN+ F ++MN +FK +D VI+F+DDIL+++ EE H ++ VL+ L L+ Sbjct: 61 MTNSPPTFQNMMNDIFKDVIDKGMVILFIDDILIFTEDEENHEAIVQEVLQRLAENNLFL 120 Query: 51121 MFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFV 50942 KC F + + FLG IG DGI++D K++ + W PT EV++ L LA YYRRFV Sbjct: 121 KPEKCVFGASEIEFLGLSIGPDGIKMDPIKVQVITDWPAPTHVKEVQALLGLANYYRRFV 180 Query: 50941 EKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSG 50762 F+ I+APL L +K + W + +F LK K P L + + D S Sbjct: 181 HNFSKIAAPLHNLMRKGVVWRWGEQQQTAFEELKRKFVEGPILAPVDFMRPLRVESDASN 240 Query: 50761 VGLGCVLM-----QHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYG--FH 50603 G VL AY SR L E NY HD ++ ++ AL+ WRHYL G Sbjct: 241 FATGAVLSMLCEDDKWHPCAYLSRGLNDVERNYDVHDKEMLGIIRALEAWRHYLEGCTHQ 300 Query: 50602 VDIYTDHKSLQYIFKQKELYLRQRRW 50525 ++I+TDH++LQY K+L RQ RW Sbjct: 301 IEIWTDHQNLQYFMSAKKLNHRQARW 326 Score = 67.5 bits (162), Expect = 2e-008 Identities = 45/152 (29%), Positives = 76/152 (49%), Gaps = 1/152 (0%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDL-FXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFS 9234 +P F +M+ +FK +D ++ ++E+H + ++ VLQ L +K Sbjct: 64 SPPTFQNMMNDIFKDVIDKGMVILFIDDILIFTEDEENHEAIVQEVLQRLAENNLFLKPE 123 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K F + FLG I +GI++D K++ +P P K + + L LA YYRRFV F Sbjct: 124 KCVFGASEIEFLGLSIGPDGIKMDPIKVQVITDWPAPTHVKEVQALLGLANYYRRFVHNF 183 Query: 9415 SSISSPLTKIT*TKVQFQ*SEGCE*RFRELNKR 9513 S I++PL + V ++ E + F EL ++ Sbjct: 184 SKIAAPLHNLMRKGVVWRWGEQQQTAFEELKRK 216 Score = 41.4 bits (95), Expect = 1.2 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 2/55 (3%) Frame = +3 Query: 9606 YDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL*YVFTLK 9770 Y S+ L E+NY HD E+ ++ +L+ W H+L G +++I+TD+++L Y + K Sbjct: 261 YLSRGLNDVERNYDVHDKEMLGIIRALEAWRHYLEGCTHQIEIWTDHQNLQYFMSAK 317 >gb|AAD04177.1| (AF110183) putative integrase [Oryza sativa] Length = 218 Score = 214 bits (539), Expect = 1e-052 Identities = 95/168 (56%), Positives = 120/168 (70%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 LR ++ E H + YSI+PGSTKMY D++ +WW GMK+D+AE+VA C CQ VK EHQ+ Sbjct: 47 LRDLILKEAHQSAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRP 106 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 GLLQ + IP WKWE I MDFITGLPRT + DSIWVI+DRLTKSAHF+PV+TT+ + Sbjct: 107 AGLLQPLPIPEWKWEEIGMDFITGLPRTPSRYDSIWVIVDRLTKSAHFVPVKTTFDGKKL 166 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTF 49648 LY+ +V G P I+SDRG QFT+ FW+ + LGT +N ST F Sbjct: 167 AELYMTHVVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAF 214 Score = 136 bits (340), Expect = 2e-029 Identities = 73/197 (37%), Positives = 119/197 (60%), Gaps = 3/197 (1%) Frame = +2 Query: 10067 LKENVKNQRVLA---FEQGGDGVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKM 10237 +KE++K + + F G + R+CVP +DLI++++H + +S GS KM Sbjct: 10 IKESIKRIQERSDTNFSIDNQGTVWCGPRICVPAKKELRDLILKEAHQSAYSIHPGSTKM 69 Query: 10238 YRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIK 10417 Y+ ++ + G+K+D+ ++VA+ Q+VK EHQR GL + + +P WKWE I MDFI Sbjct: 70 YQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLPIPEWKWEEIGMDFIT 129 Query: 10418 CFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRS 10597 + +++SI+VIVDRLTKS+HF+ V +T + A+LY+ V G I+S+R Sbjct: 130 GLPRTPSRYDSIWVIVDRLTKSAHFVPVKTTFDGKKLAELYMTHVVCRFGCPKKIVSDRG 189 Query: 10598 AYFTAQLWKSFQKSQGSKLN 10657 FT++ WK ++ G+ LN Sbjct: 190 TQFTSRFWKQLHEALGTDLN 209 >dbj|BAB02630.1| (AP002054) retroelement pol polyprotein-like [Arabidopsis thaliana] Length = 897 Score = 210 bits (530), Expect = 1e-051 Identities = 143/413 (34%), Positives = 213/413 (50%), Gaps = 26/413 (6%) Frame = -2 Query: 51631 ELKEQLRDLLEKGFIRP-STSPWGAPVLFVRKKDGSL------------------QMSIE 51509 E + +L + G I P S S W + V V KK G +M I+ Sbjct: 56 EPQRRLNPNFDAGVIYPISDSTWVSLVYCVPKKGGMTVVKNEKDELIPTRTITGHRMCID 115 Query: 51508 YKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYG 51329 Y++LN + K+ +PLP ID + ++L + +D S + ++ + D KT F YG Sbjct: 116 YRKLNAASRKDHFPLPFIDQMLERLANHPYYCFLDGYSGFFQIPIHPNDQEKTTFTCPYG 175 Query: 51328 HYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLR 51149 + ++ + FG+ NA A F M +F ++ V VF+DD Y S +L VL Sbjct: 176 TFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSGYGPSFSSCLLNLGRVLT 235 Query: 51148 VLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLE 50969 + L + KC F + LGH I GI VD K+E + P T E+RSFL Sbjct: 236 RCEETNLVLNWEKCHFMVKEGIVLGHKISEKGIEVDKGKVEVMMQLQPPKTVKEIRSFLG 295 Query: 50968 LA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDG 50789 A +YRRF++ F+ I PL RL K +F + C +SF +KD L AP + P Sbjct: 296 HAGFYRRFIKDFSKIVRPLTRLLCKETEFEFDEDCLKSFQTIKDALVSAPVVRAPNWDYP 355 Query: 50788 YVIYCDTSGVGLGCVLMQ----HGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRH 50621 + I CD S +G VL Q VI YASR L + Y T + +L VV A + +R Sbjct: 356 FEIMCDASDYVVGAVLGQKIDKKLHVIYYASRTLDDAQGRYATTEKELLAVVFAFEKFRS 415 Query: 50620 YLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRK 50441 YL G V +YTDH +L++++ +K+ R RW+ LL+++D++I+ G N D L R Sbjct: 416 YLVGSKVTVYTDHAALRHLYAKKDTKPRLLRWILLLQEFDMEIVDKKGIENGAADHLLRM 475 Query: 50440 SMGS---LTDVQPEMREMV 50393 + + D PE + MV Sbjct: 476 RIEEPLPIDDSMPEEQLMV 494 Score = 83.9 bits (204), Expect = 2e-013 Identities = 56/208 (26%), Positives = 102/208 (48%), Gaps = 3/208 (1%) Frame = -3 Query: 50073 LRCLYWWDGMKKDIAEFVAQCSNCQ*---VKIEHQKSGGLLQEIEIPTWKWEMINMDFIT 49903 L+ +WW M KD EFV++C +CQ + ++ + E+EI +++ +DF+ Sbjct: 553 LQAGFWWPTMFKDAQEFVSKCDSCQRKDNISRINEMPQNPIVEVEI----FDVWGIDFMG 608 Query: 49902 GLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRG 49723 P + I V ID ++K + + T A+ ++L+ I GVP +ISD G Sbjct: 609 LFPSSYGN-KYILVAIDYVSKWVEAIAIPTN-DAKVVLKLFKTIIFPRFGVPRVVISDGG 666 Query: 49722 AQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLP 49543 F + + K G + ++T +HPQT G+ E + + ++ +L ++ + W L Sbjct: 667 KHFINKVFENLLKKHGVKHKVATPYHPQTSGQVEISDREIKTILEKTVGITRKDWSAKLD 726 Query: 49542 LIEFAYNNHYHSSIQMAPYEALYGRKCRSPI 49450 +AY + + I P+ LYG+ C P+ Sbjct: 727 DALWAYRTAFKTPIGTTPFNILYGKSCHLPV 757 Score = 69.1 bits (166), Expect(2) = 2e-011 Identities = 50/175 (28%), Positives = 72/175 (40%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M +F ++ Y + +L VL + + K Sbjct: 189 APATFQRCMTSIFSDLIEEMVEVFMDDFSGYGPSFSSCLLNLGRVLTRCEETNLVLNWEK 248 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F +K + LGH IS +GI VDK K+E P K I SFL A +YRRF+ FS Sbjct: 249 CHFMVKEGIVLGHKISEKGIEVDKGKVEVMMQLQPPKTVKEIRSFLGHAGFYRRFIKDFS 308 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 I PLT++ + +F+ E C F+ + + F + C AS Sbjct: 309 KIVRPLTRLLCKETEFEFDEDCLKSFQTIKDALVSAPVVRAPNWDYPFEIMCDAS 363 Score = 28.6 bits (62), Expect(2) = 2e-011 Identities = 18/69 (26%), Positives = 29/69 (41%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+CIDY + N + K +PL I ++ SG ++ + D KT F Sbjct: 111 RMCIDYRKLNAASRKDHFPLPFIDQMLERLANHPYYCFLDGYSGFFQIPIHPNDQEKTTF 170 Query: 9005 IKRYGHYLF 9031 YG + + Sbjct: 171 TCPYGTFAY 179 >gb|AAC47271.1| (U09586) protease, reverse transcriptase and RNase H [Tribolium castaneum] Length = 712 Score = 206 bits (520), Expect = 2e-050 Identities = 128/406 (31%), Positives = 213/406 (51%), Gaps = 5/406 (1%) Frame = -2 Query: 51691 LLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSI 51512 L D P PY + A + ++++L+ G I+ SP+ +P+ +KKDG++++ + Sbjct: 300 LHDKTPFLKRPYPVPFALRPAVDATIQEMLDLGVIKREASPYASPMTVGKKKDGTVRICL 359 Query: 51511 EYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRY 51332 + + +N + + P D+L + + S IDLRSSY ++ + TAF Sbjct: 360 DARMINSKMIADCESPPAADELLRRFHEIRYMSTIDLRSSYWQIPLSPESRQYTAFLYNG 419 Query: 51331 GHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVL 51152 Y ++VL FG+ A+ F M+ V + FV+ ++DD+LV S + EH +HLR V Sbjct: 420 RSYTYQVLPFGLKTAVGSFSRAMDVVLGTEVREFVVNYIDDLLVASETLNEHLEHLRQVF 479 Query: 51151 RVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFL 50972 L+ ++ K F + FLGHI+ +GI+ D +KI A++ + P VR+FL Sbjct: 480 EKLKQARMTINLEKSNFIQKEVKFLGHILTINGIKADPEKISAIRNFPVPQKTKHVRAFL 539 Query: 50971 ELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPD 50792 L +YR+F +++ + L +L +K K+ W + +F +KD A L P+ Sbjct: 540 GLCNFYRKFCARYSAATQDLNKLLRKGEKWRWGRNEQEAFDRVKDLFLEAVLLRYPDLNK 599 Query: 50791 GYVIYCDTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIVVHALKIW 50627 + + D+SG GLG L Q + VIA+ASR LR E NY T + +L V+ AL + Sbjct: 600 IFYVQTDSSGYGLGAELYQIQEDGSRGVIAFASRSLRGPELNYTTTEKELLGVIFALHKF 659 Query: 50626 RHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGK 50474 R Y+ + I TDH++L+++ + + L R RW +L YD +I GK Sbjct: 660 RIYIQVTKIIIRTDHQALKFLSRCRLLSERLTRWTLILGQYDYEIELVKGK 710 Score = 65.6 bits (157), Expect = 6e-008 Identities = 34/93 (36%), Positives = 52/93 (55%) Frame = +1 Query: 9166 DHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRP 9345 +H LR V + L+ + K F K V FLGHI++ GI+ D EKI + +FP P Sbjct: 470 EHLEHLRQVFEKLKQARMTINLEKSNFIQKEVKFLGHILTINGIKADPEKISAIRNFPVP 529 Query: 9346 IFPKNI*SFLALAYYYRRFVDRFSSISSPLTKI 9444 K++ +FL L +YR+F R+S+ + L K+ Sbjct: 530 QKTKHVRAFLGLCNFYRKFCARYSAATQDLNKL 562 >dbj|BAA92705.1| (AB036887) reverse transcriptase [Tricholoma portentosum] Length = 327 Score = 199 bits (501), Expect = 3e-048 Identities = 113/318 (35%), Positives = 182/318 (56%), Gaps = 9/318 (2%) Frame = -2 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 NRYPLP I +L +QL+GAK F+K+D++ Y+ V ++E D K F G ++ V+ FG Sbjct: 1 NRYPLPLISELVNQLRGAKYFTKLDVQWGYNNVWMKEGDEWKAVFRMNCGLFEPLVMFFG 60 Query: 51298 MTNALAVFMDLMNRVFKPFL-DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYA 51122 +T++ + F +MN +F+ + + V +++DDIL++++S EE + VL +L+ KL+ Sbjct: 61 LTSSPSTFQTMMNDIFQDLIMEGMVCIYLDDILIFAKSMEEQHRVTQLVLELLRKHKLFL 120 Query: 51121 MFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFV 50942 KC+F TS+ +L II I +D K+ + W T EV+SFL A +Y RF+ Sbjct: 121 RHKKCKFEKTSIKYLRLIISKGEIYMDPVKVAGMMEWPTLTNRKEVQSFLGFANFYHRFI 180 Query: 50941 EKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSG 50762 E F+ P+ +LT+K ++ W A + +F +K+ +T +P L + + I D+S Sbjct: 181 EGFSHHVKPMFKLTKKDHRWGWAEAEQSAFNEIKNCITSSPILRFADDSKAFRIKADSSD 240 Query: 50761 VGLGCVLMQHGK------VIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYG--F 50606 G VL Q IA+ + L E NY HD ++ V+ +L+ WRH+L G Sbjct: 241 YATGSVLSQQSSDNLKWHPIAFYLKSLNAVEQNYEIHDKEMLAVMRSLEEWRHFLKGVKH 300 Query: 50605 HVDIYTDHKSLQYIFKQKELYLRQRRW 50525 V I+ DHK+L+Y K+L RQ W Sbjct: 301 KVKIWMDHKNLEYFMTAKKLNCRQAHW 327 Score = 45.7 bits (106), Expect = 0.062 Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 1/130 (0%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFL-DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFS 9234 +P+ F +M+ +F+ + + ++ + E+ ++VL+ LR + ++ Sbjct: 64 SPSTFQTMMNDIFQDLIMEGMVCIYLDDILIFAKSMEEQHRVTQLVLELLRKHKLFLRHK 123 Query: 9235 K*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRF 9414 K +F + +L IIS I +D K+ +P K + SFL A +Y RF++ F Sbjct: 124 KCKFEKTSIKYLRLIISKGEIYMDPVKVAGMMEWPTLTNRKEVQSFLGFANFYHRFIEGF 183 Query: 9415 SSISSPLTKIT 9447 S P+ K+T Sbjct: 184 SHHVKPMFKLT 194 Score = 42.6 bits (98), Expect = 0.54 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%) Frame = +3 Query: 9615 K*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGI--RVDIFTDNKSL*YVFTLK 9770 K L E+NY HD E+ +++ SL+ W HFL G+ +V I+ D+K+L Y T K Sbjct: 265 KSLNAVEQNYEIHDKEMLAVMRSLEEWRHFLKGVKHKVKIWMDHKNLEYFMTAK 318 >emb|CAA81643.1| (Z27119) blastopia polyprotein [Drosophila melanogaster] Length = 1333 Score = 198 bits (499), Expect = 5e-048 Identities = 134/461 (29%), Positives = 242/461 (52%), Gaps = 10/461 (2%) Frame = -2 Query: 51667 IPPYRMAPAELKE-----LKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYK 51503 I P+R L E +K+Q+ + +E+ +R STS + ++ VRKKDG+L++ ++Y+ Sbjct: 486 IKPFRHGHTRLSEEEAIAVKKQVEEWVEQSIVRKSTSNVASRIVVVRKKDGTLRVCVDYR 545 Query: 51502 QLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHY 51323 +LN + + + +P+P ++++ ++LQ AK F+ +DL++ + V V EA P TAF TR G + Sbjct: 546 KLNTMVLMDCFPVPIMEEVLEKLQSAKWFTTMDLQNGFFHVAVEEASKPYTAFVTREGLF 605 Query: 51322 DFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVI-VFVDDILVYSRSEEEHADHLRTVLRV 51146 +F FG N+ A F+ + +F+ ++ ++ +++DDI+VY+ + EE + VL+ Sbjct: 606 EFNKAPFGFKNSPAAFIRFVQFIFQELINSNIMQLYMDDIIVYAATPEECMEKTEMVLKR 665 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 L + KC F + FLGHII I +K AV ++ P V+ FL L Sbjct: 666 AAEFGLKIKWKKCNFMQRRIHFLGHIIEGGQICPGKEKTSAVNSFGTPQNVKAVQGFLGL 725 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 ++R+F+ +A I+ PL L +K A F ++S LK+ L P L + Sbjct: 726 TGFFRKFIPGYAQIARPLTDLLKKDAIFNIGPVEQQSVNKLKEILVNEPVLRIYSREAET 785 Query: 50785 VIYCDTSGVGLGCVLMQHGK----VIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHY 50618 ++ D S GLG VL+Q + + + SR+ K E+N ++ L+++ ALK +RHY Sbjct: 786 ELHTDASKDGLGAVLLQKFEGSFHPVCFWSRKTTKAESNRHSYYLEVKAAYLALKKFRHY 845 Query: 50617 LYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKS 50438 L G + TD + + K+ ++ W+ ++D++ + G+ VD LSR Sbjct: 846 LLGVPFKLVTDCVAFKQTTKKADVPREVGPWILYMQDFNFQPEHRAGERMRHVDFLSRHP 905 Query: 50437 MGSLTDVQPEMREMVRDIQRLSSLGVCLANSEDSGVSI*EVAKSSIIDEVK 50285 + + E+ ++ Q+ ++DS +I E+ K + K Sbjct: 906 QACMM-ITSELTARIKKSQQ----------NDDSIRAILEILKDRLFQPYK 945 Score = 63.6 bits (152), Expect = 2e-007 Identities = 42/190 (22%), Positives = 85/190 (44%) Frame = -3 Query: 50034 IAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVII 49855 + + ++ C C + K G L I+ +++D + + + + I + Sbjct: 1004 VKKLISNCIKCIIHSKKLGKQEGYLNCIDKGDAPLHTLHIDHLGPMDSSAKQYKYILATV 1063 Query: 49854 DRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLG 49675 D +K P ++T E RL + + G P I+SD+G FT+ + F Sbjct: 1064 DAFSKFVWLFPTKSTGQEEVVKRL--TDWSNIFGFPKRIVSDKGTAFTSGAFEQFMSSHN 1121 Query: 49674 TQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQM 49495 + +TT + +G+ ER + + ++ D W ++P ++ A N H HSS+++ Sbjct: 1122 VEHVCTTTGVARGNGQIERVNRLILAIISKLSSDEPSKWYKYVPEVQKAINCHVHSSLKL 1181 Query: 49494 APYEALYGRK 49465 +P+E ++G K Sbjct: 1182 SPFEVMFGTK 1191 Score = 53.5 bits (126), Expect(2) = 3e-010 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFLDL-FXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CV 9225 F +PAAF+ + +F+ ++ Y+ E+ +VL+ + Sbjct: 614 FKNSPAAFIRFVQFIFQELINSNIMQLYMDDIIVYAATPEECMEKTEMVLKRAAEFGLKI 673 Query: 9226 KFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFV 9405 K+ K F + + FLGHII G I KEK + SF P K + FL L ++R+F+ Sbjct: 674 KWKKCNFMQRRIHFLGHIIEGGQICPGKEKTSAVNSFGTPQNVKAVQGFLGLTGFFRKFI 733 Query: 9406 DRFSSISSPLTKI 9444 ++ I+ PLT + Sbjct: 734 PGYAQIARPLTDL 746 Score = 39.9 bits (91), Expect(2) = 3e-010 Identities = 22/95 (23%), Positives = 45/95 (47%) Frame = +2 Query: 8747 DKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXX 8926 ++S + ++ S + ++ +RKK LR+C+DY + N + +P+ + Sbjct: 513 EQSIVRKSTSNVASRIVVVRKKDGTLRVCVDYRKLNTMVLMDCFPVPIMEEVLEKLQSAK 572 Query: 8927 XXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLF 9031 ++L++G + V E P T F+ R G + F Sbjct: 573 WFTTMDLQNGFFHVAVEEASKPYTAFVTREGLFEF 607 Score = 38.7 bits (88), Expect = 8.0 Identities = 48/203 (23%), Positives = 90/203 (43%), Gaps = 20/203 (9%) Frame = +2 Query: 10397 INMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLV 10576 +++D + S +Q+ I VD +K ST E +L + GF Sbjct: 1041 LHIDHLGPMDSSAKQYKYILATVDAFSKFVWLFPTKSTGQEEVVKRL--TDWSNIFGFPK 1098 Query: 10577 FIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILKEVEKQCT----------IKTLEYML 10726 I+S++ FT+ ++ F S VE CT I+ + ++ Sbjct: 1099 RIVSDKGTAFTSGAFEQFMSSHN-------------VEHVCTTTGVARGNGQIERVNRLI 1145 Query: 10727 RACVI----DFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGRR--GRYHIRLFKVGE 10888 A + D W +P ++ + N HSS++++P+E ++G + R RL + Sbjct: 1146 LAIISKLSSDEPSKWYKYVPEVQKAINCHVHSSLKLSPFEVMFGTKMYTRVEDRLLE--- 1202 Query: 10889 SGLIGLDVVHQI----MDKLKVIQERMMTTQSCKKFNTDIRRR 11005 L+ +VV Q + ++++ + Q K N D +RR Sbjct: 1203 --LLQEEVVCQFNEDRYEMRQLVKRNIEQAQKDYKRNYDKKRR 1243 >dbj|BAA24352.1| (AB000279) Pol-like peptide [Alternaria alternata] Length = 551 Score = 198 bits (499), Expect = 5e-048 Identities = 133/424 (31%), Positives = 233/424 (54%), Gaps = 27/424 (6%) Frame = -2 Query: 51652 MAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRK-----KDGSLQMSIEYKQLNKV 51488 M+ ELK+LK L +++GFI+PS S APV FVR + G L++ I+Y+ LN Sbjct: 1 MSQEELKQLKALLDLEIQRGFIKPSKSESSAPVFFVRDPTTGGRSGQLRLVIDYRDLNSK 60 Query: 51487 TVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVL 51308 V + YP+P L + L GA + +D+RS + +R+ TAF T +G +++ ++ Sbjct: 61 IVLDEYPIPLSRTLMNDLAGADWITAMDVRSGFANLRMAPGSEKATAFKTFFGSFEYTIM 120 Query: 51307 SFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSR-SEEEHADHLRTVLRVLQHQK 51131 G+ A +VF +N V P+L +F ++DD++++++ S ++H +H+R +L LQ Sbjct: 121 PMGLATAPSVFQRFINSVLNPYLGIFCHAYLDDVVIFTKGSLDQHKEHVRLILEALQDNG 180 Query: 51130 LYAMFSKCEFWLTSLAFLG-HIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YY 50954 L KC+++ FLG +++ GIR+ KI+ ++ P T++RSFL + +Y Sbjct: 181 LRLKPHKCKWFTKECNFLGFNVVCGKGIRMAEDKIQGIRNLPPPRGLTDLRSFLGMVGFY 240 Query: 50953 RRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYC 50774 +F+ ++ +A L LT+K + WT+ + +F + + ++ + + Sbjct: 241 DKFIPHYSDTTACLTDLTKKDKPWEWTSKHQAAFDRILSHIRDDIYIRAFQPGKPVRLST 300 Query: 50773 DTSGVGLGCVLMQ------HGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYL- 50615 D+S +L Q H ++ + + E N+ HD +L +VHA +RHYL Sbjct: 301 DSSDEAYAGILEQEYDDGWHPFLLFH--HKFHAAEKNWDIHDKELYAIVHAFSQYRHYLA 358 Query: 50614 -YGFHVDIYTDHKSL-QYIFKQKELYL---RQRRWLELLKDYDVDILYHLGKANVVVDAL 50450 G V ++TDH++L +++F L R RW E L + I Y GK NV+ D L Sbjct: 359 QTGHVVQVFTDHRNLAKFMFSTNLLKSHDGRLGRWWETLSQCNFQIQYLPGKENVIPDFL 418 Query: 50449 SRKSMGSLTD-----VQPEMR---EMVRDIQ 50381 SR + ++ + PE+R + + DIQ Sbjct: 419 SRSGYDASSEAPARVLLPELRFSDKALADIQ 449 Score = 57.4 bits (136), Expect(2) = 2e-006 Identities = 35/130 (26%), Positives = 70/130 (52%), Gaps = 2/130 (1%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKED-HASDLRIVLQTLRNKE*CVKFS 9234 AP+ F ++ V P+L +F ++ D H +R++L+ L++ +K Sbjct: 127 APSVFQRFINSVLNPYLGIFCHAYLDDVVIFTKGSLDQHKEHVRLILEALQDNGLRLKPH 186 Query: 9235 K*EFCLKYVVFLG-HIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDR 9411 K ++ K FLG +++ G+GIR+ ++KI+ + P P ++ SFL + +Y +F+ Sbjct: 187 KCKWFTKECNFLGFNVVCGKGIRMAEDKIQGIRNLPPPRGLTDLRSFLGMVGFYDKFIPH 246 Query: 9412 FSSISSPLTKIT 9447 +S ++ LT +T Sbjct: 247 YSDTTACLTDLT 258 Score = 31.7 bits (70), Expect(2) = 6.5 Identities = 20/53 (37%), Positives = 34/53 (63%), Gaps = 3/53 (5%) Frame = +3 Query: 9633 EKNYPTHDIELASLVFSLKIWCHFL--YGIRVDIFTDNKSL-*YVFTLK*LISNKG 9791 EKN+ HD EL ++V + + H+L G V +FTD+++L ++F+ L S+ G Sbjct: 333 EKNWDIHDKELYAIVHAFSQYRHYLAQTGHVVQVFTDHRNLAKFMFSTNLLKSHDG 388 Score = 25.8 bits (55), Expect(2) = 6.5 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = +2 Query: 9791 RWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTS 9898 RW E + I Y PGK NV+ L R +S Sbjct: 392 RWWETLSQCNFQIQYLPGKENVIPDFLSRSGYDASS 427 Score = 23.1 bits (48), Expect(2) = 2e-006 Identities = 21/97 (21%), Positives = 40/97 (40%), Gaps = 5/97 (5%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRK-----KK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXX 8914 + FI + S A V F+R + LR+ IDY N+ +YP+ Sbjct: 19 RGFIKPSKSESSAPVFFVRDPTTGGRSGQLRLVIDYRDLNSKIVLDEYPIPLSRTLMNDL 78 Query: 8915 XXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 +++RSG +++ T F +G + + ++ Sbjct: 79 AGADWITAMDVRSGFANLRMAPGSEKATAFKTFFGSFEYTIM 120 >emb|CAB06047.1| (Z83760) COS41.3 [Ciona intestinalis] Length = 1209 Score = 196 bits (493), Expect = 3e-047 Identities = 127/412 (30%), Positives = 209/412 (49%), Gaps = 5/412 (1%) Frame = -2 Query: 51679 QPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQ 51500 +P+ R + +L + +++ LLE+ I PS SPW A VL R+ +M I+Y Q Sbjct: 439 KPLVTRSRRYSKEDLGFISHEVKRLLEEEIIEPSNSPWRAQVLVAREGSKKPRMVIDYSQ 498 Query: 51499 -LNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHY 51323 +N T + YPLP I+ + +++ K +S +DLRS+YH++ ++++D P TAF Y Sbjct: 499 TVNVFTELDAYPLPSIESIVNKVTQDKVYSSLDLRSAYHQIPLKDSDRPFTAFEAEGQLY 558 Query: 51322 DFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVL 51143 ++ L FG+TN ++ F ++NR + V ++DDI V + EEH +L+ +L Sbjct: 559 QYKRLPFGVTNGVSAFQRIINRFIQDNHLNKVYAYLDDITVTGETLEEHDRNLKKLLVAA 618 Query: 51142 QHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA 50963 + L K + +TS+ FLG+ I R D +++ + P TP E++ + Sbjct: 619 KRHNLTINEEKSKLRMTSIDFLGYRISYGDARPDPERLRPLLNLPPPDTPRELKRIQGMF 678 Query: 50962 *YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYV 50783 YY +++ +F+ PL+ + KF T F LK +L A L + Sbjct: 679 AYYAKWISRFSHKIQPLLCI----KKFPLTKDALVCFETLKTELAAAS-LGAIRSEEPLQ 733 Query: 50782 IYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFH 50603 + D S + VL Q G+ +AY SR L E NYP + + VV A++ W H+L G Sbjct: 734 VETDASDYAIAAVLSQSGRPVAYMSRTLNTCERNYPAIEKEATAVVEAVRKWSHFLKGKS 793 Query: 50602 VDIYTDHKSLQYIFKQ----KELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 + TD +S+ ++F Q K + W L + DI++ G+ N V DALSR Sbjct: 794 FTLVTDQRSVSFMFDQRNRGKIKNSKILMWRLELSQFTYDIVHRPGRDNFVPDALSR 850 Score = 51.9 bits (122), Expect = 8e-004 Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 6/219 (2%) Frame = -3 Query: 50103 NPGSTKMYHDLRCLYWWDGMKKDIAEFVA-QCSNCQ*VKIEHQK--SGGLLQEIEIPTWK 49933 +PG +++YH ++ + A+ + QC C VK K S L++ + Sbjct: 870 HPGFSRLYHFIKTRNL--PFSSEEAKIICRQCKTCAEVKPRFYKPASRNLIKAMR----P 923 Query: 49932 WEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHG 49753 WE ++MDF + + +I+D ++ P + SA V + + L G Sbjct: 924 WERLSMDFKGPVKGRN---SYLLIIVDEYSRFPFVFPCKRMTSA--VVIQCLTNLFCLFG 978 Query: 49752 VPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTL---EDMLRAS 49582 P + SDRG F ++ + F G + ST +HPQ + + ER QT+ +L Sbjct: 979 FPAYVHSDRGLSFISHEVKVFLTERGIATSKSTPYHPQGNSQCERVNQTIWRTVKLLLHG 1038 Query: 49581 IIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIG 49447 + + W++ LP A + + P+E + RS G Sbjct: 1039 KLMAEEQWEEVLPQALHAIRSLVCLATNETPHERFFNFSRRSMTG 1083 Score = 43.8 bits (101), Expect = 0.24 Identities = 20/67 (29%), Positives = 40/67 (58%) Frame = +3 Query: 9561 YSVLSCIL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDN 9740 Y++ + + +G+ + Y S+ L E+NYP + E ++V +++ W HFL G + TD Sbjct: 741 YAIAAVLSQSGRPVAYMSRTLNTCERNYPAIEKEATAVVEAVRKWSHFLKGKSFTLVTDQ 800 Query: 9741 KSL*YVF 9761 +S+ ++F Sbjct: 801 RSVSFMF 807 Score = 41.4 bits (95), Expect = 1.2 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTK-KKYPLLRIYGXXXXXX 8917 + ++ I + SPW A VL R+ R+ IDY Q NV T+ YPL I Sbjct: 463 LLEEEIIEPSNSPWRAQVLVAREGSKKPRMVIDYSQTVNVFTELDAYPLPSIESIVNKVT 522 Query: 8918 XXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 +++LRS H++ +++ D P T F Sbjct: 523 QDKVYSSLDLRSAYHQIPLKDSDRPFTAF 551 Score = 38.7 bits (88), Expect = 8.0 Identities = 23/91 (25%), Positives = 42/91 (45%) Frame = +1 Query: 9163 EDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPR 9342 E+H +L+ +L + + K + + + FLG+ IS R D E++ + P Sbjct: 605 EEHDRNLKKLLVAAKRHNLTINEEKSKLRMTSIDFLGYRISYGDARPDPERLRPLLNLPP 664 Query: 9343 PIFPKNI*SFLALAYYYRRFVDRFSSISSPL 9435 P P+ + + YY +++ RFS PL Sbjct: 665 PDTPRELKRIQGMFAYYAKWISRFSHKIQPL 695 >dbj|BAB02140.1| (AP000411) contains similarity to reverse transcriptase~gene_id:K11J14.5 [Arabidopsis thaliana] Length = 904 Score = 193 bits (486), Expect = 2e-046 Identities = 112/308 (36%), Positives = 157/308 (50%) Frame = -2 Query: 51775 VVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEK 51596 VV F D+F + + I +L P+ PYR + E + + DLL Sbjct: 412 VVAAFLDIFEEPTELPPFRAQHDHKIKLLEGYNPVTQRPYRYVVQQKNETDKMVEDLLLS 471 Query: 51595 GFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCF 51416 G + S+SP+ +PV+ V+KK G+ ++ + Y++LN +T+K+R+P+P I+DL D+L GA F Sbjct: 472 GTVLNSSSPYASPVVLVKKKHGTWRLCVNYRELNGMTMKDRFPIPLIEDLMDELGGAVVF 531 Query: 51415 SKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLD 51236 SKIDLR+ YH+VR+ DI K F T GHY++ V+ FG+TNA A F LMN +FKPFL Sbjct: 532 SKIDLRAGYHQVRMATEDIHKPTFKTHSGHYEYLVMPFGLTNAPATFQGLMNAIFKPFLR 591 Query: 51235 MFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGAD 51056 FV+ F DDIL+YS S EEH HL+ V + Sbjct: 592 KFVLFFFDDILIYSSSMEEHVQHLQQVFEM------------------------------ 621 Query: 51055 GIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*W 50876 +P V+S LA YYRRFV F +I+A L LT K F W Sbjct: 622 ---------------AKPNNTQTVKSICGLAGYYRRFVRSFGVIAAHLHMLT-KINSFEW 665 Query: 50875 TNACERSF 50852 + +F Sbjct: 666 SEEAHEAF 673 Score = 60.1 bits (143), Expect = 3e-006 Identities = 32/92 (34%), Positives = 47/92 (50%) Frame = -3 Query: 50013 CSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSA 49834 C CQ K + GLLQ + IP W ++MDFI GLP + K I V++D +K+ Sbjct: 750 CGTCQQCKSDTAAYPGLLQPLLIPDSIWSDVSMDFIDGLPMSNGK-TVIRVVVDHFSKAV 808 Query: 49833 HFLPVRTTYSAEDYVRLYVREIVRLHGVPTSI 49738 HF+ + YS Y+ + +LH PT + Sbjct: 809 HFMALSHPYSPLTLAHAYLDNVFKLHECPTFV 840 Score = 55.4 bits (131), Expect(2) = 1e-009 Identities = 28/94 (29%), Positives = 50/94 (52%) Frame = +2 Query: 8774 SPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRS 8953 SP+ + V+ ++KK R+C++Y + N +T K ++P+ I I+LR+ Sbjct: 479 SPYASPVVLVKKKHGTWRLCVNYRELNGMTMKDRFPIPLIEDLMDELGGAVVFSKIDLRA 538 Query: 8954 GCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 G H++++ D+ K F GHY +LV+ LT Sbjct: 539 GYHQVRMATEDIHKPTFKTHSGHYEYLVMPFGLT 572 Score = 35.6 bits (80), Expect(2) = 1e-009 Identities = 18/47 (38%), Positives = 24/47 (50%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQ 9198 APA F LM+ +FKPFL F YS + E+H L+ V + Sbjct: 574 APATFQGLMNAIFKPFLRKFVLFFFDDILIYSSSMEEHVQHLQQVFE 620 >gb|AAF79809.1|AC020646_32 (AC020646) T32E20.9 [Arabidopsis thaliana] Length = 1586 Score = 189 bits (476), Expect = 3e-045 Identities = 130/400 (32%), Positives = 203/400 (50%), Gaps = 20/400 (5%) Frame = -2 Query: 51667 IPPYRMAPAELKEL-KEQLRDLLEKGFIRP-STSPWGAPVLFVRKKDGSL---------- 51524 I P R LKE+ K+++ LL+ G I P S S W +PV V KK G Sbjct: 810 IEPQRRLNPNLKEVVKKEILKLLDAGVIYPISDSTWVSPVHCVPKKGGMTVVKNSKDELI 869 Query: 51523 --------QMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVRE 51368 +M IEY++LN + K +PLP ID + ++L + +D S + ++ + Sbjct: 870 PTRTITGHRMCIEYRKLNVASRKEHFPLPFIDHMLERLANHPYYCFLDSYSGFFQIPIHP 929 Query: 51367 ADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRS 51188 D KT F YG + ++ + FG+ NA A F M +F ++ V VF+DD VY S Sbjct: 930 NDQGKTTFTCPYGTFAYKRMPFGLCNAPATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSS 989 Query: 51187 EEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWT 51008 +L VL+ + L + KC F + LG I +GI VD KI+ + Sbjct: 990 FSSCLLNLCRVLKRCEETNLVLNWEKCHFMVREGIVLGRKISEEGIEVDKAKIDVMMQLQ 1049 Query: 51007 RPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLT 50828 P T ++RSFL A +YR F++ F+ ++ PL RL K +F + + C +F L+K+ L Sbjct: 1050 PPKTVKDIRSFLGHAGFYRIFIKDFSKLARPLTRLLCKETEFAFDDECLTAFKLIKEALI 1109 Query: 50827 IAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIV 50648 AP + P + ++I Q+R Y T + +L V Sbjct: 1110 TAPIVQAPNWDFPF-------------------EIITMDDAQVR-----YATTEKELLAV 1145 Query: 50647 VHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKAN 50468 V A + +R YL G V IYTDH +L++I+ +K+ R RW+ LL+++D++I+ G N Sbjct: 1146 VFAFEKFRSYLVGSKVTIYTDHAALRHIYAKKDTKPRLLRWILLLQEFDMEIVDKKGIEN 1205 Score = 59.3 bits (141), Expect(2) = 2e-008 Identities = 41/142 (28%), Positives = 63/142 (43%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M +F ++ Y + +L VL+ + + K Sbjct: 956 APATFQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEK 1015 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F ++ + LG IS EGI VDK KI+ P K+I SFL A +YR F+ FS Sbjct: 1016 CHFMVREGIVLGRKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSFLGHAGFYRIFIKDFS 1075 Query: 9418 SISSPLTKIT*TKVQFQ*SEGC 9483 ++ PLT++ + +F + C Sbjct: 1076 KLARPLTRLLCKETEFAFDDEC 1097 Score = 40.6 bits (93), Expect = 2.1 Identities = 33/140 (23%), Positives = 57/140 (40%) Frame = -3 Query: 49869 IWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSF 49690 I V ID ++K + T A ++L+ I GVP +ISD G F + + Sbjct: 1320 ILVAIDYVSKWVEAIASHTN-DARVVLKLFKTIIFPRFGVPRIVISDGGKHFINKGFENL 1378 Query: 49689 QKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYH 49510 K G + K E + + ++ +L ++ + W L +AY + Sbjct: 1379 LKKHGVK------------HKVEISNREIKAILEKTVGSTRKDWSAKLNDTLWAYRTAFK 1426 Query: 49509 SSIQMAPYEALYGRKCRSPI 49450 + I P+ LYG+ C P+ Sbjct: 1427 TPIGTTPFNLLYGKSCHLPV 1446 Score = 27.8 bits (60), Expect(2) = 2e-008 Identities = 17/69 (24%), Positives = 30/69 (42%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+CI+Y + N + K+ +PL I ++ SG ++ + D KT F Sbjct: 878 RMCIEYRKLNVASRKEHFPLPFIDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGKTTF 937 Query: 9005 IKRYGHYLF 9031 YG + + Sbjct: 938 TCPYGTFAY 946 >emb|CAA65970.1| (X97304) ORF V [Strawberry vein banding virus] Length = 708 Score = 189 bits (475), Expect = 3e-045 Identities = 130/420 (30%), Positives = 212/420 (49%), Gaps = 19/420 (4%) Frame = -2 Query: 51691 LLDTQPIF-IPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRK----KDGS 51527 LLDT I P + +P + +E K Q+ +LL+ G IRPS SP +P VR K G Sbjct: 272 LLDTNKIIKCKPMQYSPQDREEFKTQIEELLKLGIIRPSKSPHSSPAFMVRNHAEIKRGK 331 Query: 51526 LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTA 51347 +M I YK+LN T + Y LP + L ++ G +S D +S + +VR+ I TA Sbjct: 332 ARMVINYKKLNDHTKGDGYLLPNKEQLLQRIGGKTFYSSFDCKSGFWQVRLAPETIQLTA 391 Query: 51346 FWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADH 51167 F GHY++ V+ FG+ A A+F M+ F V+VDDI+V+S++EEEH H Sbjct: 392 FSCPQGHYEWLVMPFGLKQAPAIFQRHMDESLSNMYPQFCAVYVDDIIVFSKTEEEHLGH 451 Query: 51166 LRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQ-KIEAVKTWTRPTTPT 50990 ++ VL + + K + T++ FLG +I ++V + + V + + Sbjct: 452 VKIVLNRCKALGIVLSKKKAQLCKTTINFLGLVIERGNLKVQSHIGLHLVAFPDQLSDRN 511 Query: 50989 EVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLN 50810 ++ FL L Y + K A + +PL +K + WT + +K + P L Sbjct: 512 ALQRFLGLLNYISAYFPKIANLRSPLQVKLKKEITWSWTEKDTETVRKIKSLVKTLPDLY 571 Query: 50809 LPEGPDGYVIYCDTSGVGLGCVL---MQHGK--VIAYASRQLRKHENNYPTHDLKLEIVV 50645 P D +I CD S G +L + GK + YAS + E NY +++ ++ ++ Sbjct: 572 NPSPEDKPIIECDASDDHWGAILKAKLPEGKEVICRYASGTFKPAEKNYHSNEKEILSII 631 Query: 50644 HALKIWRHYLYGFHVDIYTDHKSLQYI--------FKQKELYLRQRRWLELLKDYDVDIL 50489 A+K +R Y+ + + TD+ + Y +KQ L RW L++Y DI Sbjct: 632 KAIKAFRAYILPYKFLVRTDNTNAAYFVRTNIAGDYKQSRLV----RWQMALREYSFDIE 687 Query: 50488 YHLGKANVVVDALSRKSMG 50432 + G+ NV+ D ++R+ G Sbjct: 688 HVSGQKNVLADIMTRELAG 706 >gb|AAF00146.1|AF149813_2 (AF149813) retrotransposon del1-46 homolog [Oryza sativa] Length = 200 Score = 183 bits (460), Expect = 2e-043 Identities = 88/155 (56%), Positives = 115/155 (73%) Frame = -2 Query: 51802 EAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELK 51623 + +L+SV +V E+PDVF +IEF I++ T PI PYRMA EL E+K Sbjct: 46 QVTSLESVPIVCEYPDVFPEELTRMPPDREIEFAIELAPGTAPIAKRPYRMAANELAEVK 105 Query: 51622 EQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLF 51443 Q+ +L KG++RP +SPWGAPVL V+KKDGS +M I+Y+ LN+VT+KN+YPLPRIDDLF Sbjct: 106 RQIEELESKGYVRPXSSPWGAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPLPRIDDLF 165 Query: 51442 DQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWT 51338 DQL+GA+ FSKIDLRS YH++++R DIPKTAF T Sbjct: 166 DQLKGARVFSKIDLRSGYHQLKIRSEDIPKTAFST 200 Score = 69.9 bits (168), Expect(2) = 2e-014 Identities = 37/85 (43%), Positives = 47/85 (54%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 K ++ SPWGA VL ++KK R+ IDY N VT K KYPL RI Sbjct: 114 KGYVRPXSSPWGAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPLPRIDDLFDQLKGARV 173 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNF 9004 I+LRSG H++K+R D+PKT F Sbjct: 174 FSKIDLRSGYHQLKIRSEDIPKTAF 198 Score = 37.9 bits (86), Expect(2) = 2e-014 Identities = 25/56 (44%), Positives = 36/56 (63%), Gaps = 4/56 (7%) Frame = +1 Query: 8533 SRANDLSVEVPSLQLVCIVGKFLD----DLFGVPPDREIDFGIQNIPDTRPISIP*YIMA 8700 SR+ ++V SL+ V IV ++ D +L +PPDREI+F I+ P T PI+ Y MA Sbjct: 38 SRSILTCLQVTSLESVPIVCEYPDVFPEELTRMPPDREIEFAIELAPGTAPIAKRPYRMA 97 >gb|AAD17351.1| (AF128395) contains similarity to retrovirus-related polyproteins and to CCHC zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051, E= 1) [Arabidopsis thaliana] Length = 1138 Score = 182 bits (458), Expect = 3e-043 Identities = 95/215 (44%), Positives = 136/215 (63%) Frame = -2 Query: 51070 IIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKA 50891 + DG++VD +K++A++ W P + +VRSF LA +YRRFV F+ ++APL + +K Sbjct: 531 VASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIKKN 590 Query: 50890 AKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYA 50711 F W A E +F LK+KLT AP L+LP+ + I CD GVG+G VLMQ K IAY Sbjct: 591 VGFKWEQAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDAPGVGIGAVLMQDKKPIAYF 650 Query: 50710 SRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQR 50531 S +L NYPT+D +L +V AL+ W+HYL+ I+TDH+SL+++ Q++L R Sbjct: 651 SEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHA 710 Query: 50530 RWLELLKDYDVDILYHLGKANVVVDALSRKSMGSL 50426 RW+E ++ + I Y GK NVV DALSR+ G L Sbjct: 711 RWVEFIETFPYVIKYKKGKDNVVADALSRRHEGFL 745 Score = 179 bits (449), Expect = 4e-042 Identities = 91/234 (38%), Positives = 139/234 (58%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 LR + E H + G +K ++ + W MK+D+ +C+ C+ K + Q Sbjct: 758 LRELFIREAHGGGLMGHFGVSKTLKVMQDHFHWPHMKRDVERMCERCTTCKQAKAKSQPH 817 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 G L + IP W I+MDF+ GLPRT+ DSI+V++DR +K AHF+P T A Sbjct: 818 G-LCTPLPIPLHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHI 876 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 L+ RE+VRLHG+P +I+SDR +F + FW++ LGT++ STT HPQTDG++E Sbjct: 877 ANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVN 936 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPI 49450 +TL +LRA I +W+D LP +EFAYN+ HS+ + +P++ +YG +P+ Sbjct: 937 RTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPL 990 Score = 127 bits (315), Expect = 2e-026 Identities = 77/265 (29%), Positives = 137/265 (51%), Gaps = 5/265 (1%) Frame = +2 Query: 10052 PIFLVLKENVKNQRVLAFEQGGDGVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSI 10231 P + K+ N A + +G L Y RLC+PN ++L + ++H G Sbjct: 720 PYVIKYKKGKDNVVADALSRRHEGFLFYDNRLCIPN-SSLRELFIREAHGGGLMGHFGVS 778 Query: 10232 KMYRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDF 10411 K +++++ + +K+D+ + + +Q K + Q GL + +P W I+MDF Sbjct: 779 KTLKVMQDHFHWPHMKRDVERMCERCTTCKQAKAKSQP-HGLCTPLPIPLHPWNDISMDF 837 Query: 10412 IKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISN 10591 + +R +SIFV+VDR +K +HF+ T+ A A L+ ++V RLHG I+S+ Sbjct: 838 VVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSD 897 Query: 10592 RSAYFTAQLWKSFQKSQGSKLN*VLLFIL-----KEVEKQCTIKTLEYMLRACVIDFKVN 10756 R F + WK+ G+K LLF + + + +TL +LRA + Sbjct: 898 RDTKFLSYFWKTLWSKLGTK----LLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKT 953 Query: 10757 WDDNMPLIEYSYNNSYHSSIQMAPYEALYG 10846 W+D +P +E++YN+S HS+ + +P++ +YG Sbjct: 954 WEDCLPHVEFAYNHSVHSATKFSPFQIVYG 983 Score = 54.7 bits (129), Expect(3) = 3e-013 Identities = 30/101 (29%), Positives = 53/101 (51%) Frame = +1 Query: 9277 IISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TK 9456 + S +G++VD+EK+++ +P P + SF LA +YRRFV FS++++PLT++ Sbjct: 531 VASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIKKN 590 Query: 9457 VQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHA 9579 V F+ + E F+ L ++ F + C A Sbjct: 591 VGFKWEQAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDA 631 Score = 52.7 bits (124), Expect = 5e-004 Identities = 29/62 (46%), Positives = 36/62 (57%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 IE ID + P YR P E KEL++Q+ +L+E+G I S SP PVL V KKD Sbjct: 466 IEHQIDFVPGASLPNRPAYRTNPVETKELEKQVNELMERGHICESMSPCAVPVLLVPKKD 525 Query: 51532 GS 51527 GS Sbjct: 526 GS 527 Score = 42.6 bits (98), Expect = 0.54 Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 3/139 (2%) Frame = +1 Query: 11068 RFVNK--GKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPSLIV 11241 RF NK KL+PR GS+K+ KR+ + Y L+L E F + G+ +I+ Sbjct: 1006 RFPNKRKSKLMPRMDGSFKVLKRINDNAYSLDLQDETDLRSNPFQV-------GEDDVIM 1058 Query: 11242 PTKIVGIKDNLSYEEF*CRYSIFKFES*GQRKLLQSKSFGGTNSXXXXXXXXXXI*GRDI 11421 + G K+ L EEF G+RK L+ G + Sbjct: 1059 GSLDHGAKEQLEPEEF------------GERKQLEDGELGAKKDEA-------------L 1093 Query: 11422 HIFLNP-*RIQTKVINSFL*TL 11484 H+ P R +TK++N + TL Sbjct: 1094 HVLEGPITRSKTKLLNQAITTL 1115 Score = 39.5 bits (90), Expect(3) = 3e-013 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = +3 Query: 9594 KVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL 9749 K I Y S+ L NYPT+D EL +LV +L+ W H+L+ I TD++SL Sbjct: 645 KPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESL 696 Score = 28.6 bits (62), Expect(3) = 3e-013 Identities = 14/38 (36%), Positives = 19/38 (49%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMG 9889 N + RW+E + + I Y GK NVV +L R G Sbjct: 706 NKRHARWVEFIETFPYVIKYKKGKDNVVADALSRRHEG 743 >emb|CAB77944.1| (AL161508) putative polyprotein [Arabidopsis thaliana] Length = 1138 Score = 182 bits (458), Expect = 3e-043 Identities = 95/215 (44%), Positives = 136/215 (63%) Frame = -2 Query: 51070 IIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKA 50891 + DG++VD +K++A++ W P + +VRSF LA +YRRFV F+ ++APL + +K Sbjct: 531 VASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIKKN 590 Query: 50890 AKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYA 50711 F W A E +F LK+KLT AP L+LP+ + I CD GVG+G VLMQ K IAY Sbjct: 591 VGFKWEQAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDAPGVGIGAVLMQDKKPIAYF 650 Query: 50710 SRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQR 50531 S +L NYPT+D +L +V AL+ W+HYL+ I+TDH+SL+++ Q++L R Sbjct: 651 SEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHA 710 Query: 50530 RWLELLKDYDVDILYHLGKANVVVDALSRKSMGSL 50426 RW+E ++ + I Y GK NVV DALSR+ G L Sbjct: 711 RWVEFIETFPYVIKYKKGKDNVVADALSRRHEGFL 745 Score = 179 bits (449), Expect = 4e-042 Identities = 91/234 (38%), Positives = 139/234 (58%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 LR + E H + G +K ++ + W MK+D+ +C+ C+ K + Q Sbjct: 758 LRELFIREAHGGGLMGHFGVSKTLKVMQDHFHWPHMKRDVERMCERCTTCKQAKAKSQPH 817 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 G L + IP W I+MDF+ GLPRT+ DSI+V++DR +K AHF+P T A Sbjct: 818 G-LCTPLPIPLHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHI 876 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 L+ RE+VRLHG+P +I+SDR +F + FW++ LGT++ STT HPQTDG++E Sbjct: 877 ANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVN 936 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPI 49450 +TL +LRA I +W+D LP +EFAYN+ HS+ + +P++ +YG +P+ Sbjct: 937 RTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSVHSATKFSPFQIVYGFNPITPL 990 Score = 127 bits (315), Expect = 2e-026 Identities = 77/265 (29%), Positives = 137/265 (51%), Gaps = 5/265 (1%) Frame = +2 Query: 10052 PIFLVLKENVKNQRVLAFEQGGDGVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSI 10231 P + K+ N A + +G L Y RLC+PN ++L + ++H G Sbjct: 720 PYVIKYKKGKDNVVADALSRRHEGFLFYDNRLCIPN-SSLRELFIREAHGGGLMGHFGVS 778 Query: 10232 KMYRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDF 10411 K +++++ + +K+D+ + + +Q K + Q GL + +P W I+MDF Sbjct: 779 KTLKVMQDHFHWPHMKRDVERMCERCTTCKQAKAKSQP-HGLCTPLPIPLHPWNDISMDF 837 Query: 10412 IKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISN 10591 + +R +SIFV+VDR +K +HF+ T+ A A L+ ++V RLHG I+S+ Sbjct: 838 VVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSD 897 Query: 10592 RSAYFTAQLWKSFQKSQGSKLN*VLLFIL-----KEVEKQCTIKTLEYMLRACVIDFKVN 10756 R F + WK+ G+K LLF + + + +TL +LRA + Sbjct: 898 RDTKFLSYFWKTLWSKLGTK----LLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKT 953 Query: 10757 WDDNMPLIEYSYNNSYHSSIQMAPYEALYG 10846 W+D +P +E++YN+S HS+ + +P++ +YG Sbjct: 954 WEDCLPHVEFAYNHSVHSATKFSPFQIVYG 983 Score = 54.7 bits (129), Expect(3) = 3e-013 Identities = 30/101 (29%), Positives = 53/101 (51%) Frame = +1 Query: 9277 IISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TK 9456 + S +G++VD+EK+++ +P P + SF LA +YRRFV FS++++PLT++ Sbjct: 531 VASTDGVKVDEEKVKAIREWPSPKSVGKVRSFHGLAGFYRRFVRDFSTLAAPLTEVIKKN 590 Query: 9457 VQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHA 9579 V F+ + E F+ L ++ F + C A Sbjct: 591 VGFKWEQAPEDAFQALKEKLTHAPVLSLPDFLKTFEIECDA 631 Score = 52.7 bits (124), Expect = 5e-004 Identities = 29/62 (46%), Positives = 36/62 (57%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 IE ID + P YR P E KEL++Q+ +L+E+G I S SP PVL V KKD Sbjct: 466 IEHQIDFVPGASLPNRPAYRTNPVETKELEKQVNELMERGHICESMSPCAVPVLLVPKKD 525 Query: 51532 GS 51527 GS Sbjct: 526 GS 527 Score = 42.6 bits (98), Expect = 0.54 Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 3/139 (2%) Frame = +1 Query: 11068 RFVNK--GKLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGDPSLIV 11241 RF NK KL+PR GS+K+ KR+ + Y L+L E F + G+ +I+ Sbjct: 1006 RFPNKRKSKLMPRMDGSFKVLKRINDNAYSLDLQDETDLRSNPFQV-------GEDDVIM 1058 Query: 11242 PTKIVGIKDNLSYEEF*CRYSIFKFES*GQRKLLQSKSFGGTNSXXXXXXXXXXI*GRDI 11421 + G K+ L EEF G+RK L+ G + Sbjct: 1059 GSLDHGAKEQLEPEEF------------GERKQLEDGELGAKKDEA-------------L 1093 Query: 11422 HIFLNP-*RIQTKVINSFL*TL 11484 H+ P R +TK++N + TL Sbjct: 1094 HVLEGPITRSKTKLLNQAITTL 1115 Score = 39.5 bits (90), Expect(3) = 3e-013 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = +3 Query: 9594 KVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL 9749 K I Y S+ L NYPT+D EL +LV +L+ W H+L+ I TD++SL Sbjct: 645 KPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHYLWPKEFVIHTDHESL 696 Score = 28.6 bits (62), Expect(3) = 3e-013 Identities = 14/38 (36%), Positives = 19/38 (49%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMG 9889 N + RW+E + + I Y GK NVV +L R G Sbjct: 706 NKRHARWVEFIETFPYVIKYKKGKDNVVADALSRRHEG 743 >gb|AAG12922.1|AC022456_7 (AC022456) polyprotein, putative; 77260-80472 [Arabidopsis thaliana] Length = 884 Score = 181 bits (454), Expect = 1e-042 Identities = 117/354 (33%), Positives = 179/354 (50%), Gaps = 4/354 (1%) Frame = -2 Query: 51505 KQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGH 51326 K+LN T KN +PL ID L ++L K + +D S + ++ + D KT F YG Sbjct: 515 KKLNAATRKNHFPLQFIDQLLERLSNHKYYCVLDGYSGFFQIPIHPDDQEKTMFTCPYGT 574 Query: 51325 YDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 + + + FG+ NA A+F M +F ++ F+ VF+DD VY S E ++LR VL Sbjct: 575 FAYSRMPFGLCNAPAIFERCMMSIFTDMIENFIEVFMDDFSVYGSSFEACLENLRKVLAR 634 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 + + L + KC F + LGH + GI V+ KIE + T + + L Sbjct: 635 CEEKNLVLNWEKCHFMVQEGIVLGHKVSGAGIEVNKAKIEVM-------TSLQALDSVNL 687 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 RFV+ F+ I+ PL L K KF + + C +F +K+ L AP + + + Sbjct: 688 -----RFVKDFSKIARPLTALLCKDVKFDFNSECHDAFNQIKNALVSAPIVQPLDWNLPF 742 Query: 50785 VIYCDTSGVGLGCVLMQHG----KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHY 50618 I CD +G VL Q I YASR L + N T + +L VV A +R Y Sbjct: 743 EIMCDAGDYAVGAVLGQRKGNKLHAIHYASRTLDDAQRNNATTEKELLAVVFAFDKFRSY 802 Query: 50617 LYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 L G V ++TDH +L+Y+ ++K+ R RW+ LL+++D+++ G N V D LSR Sbjct: 803 LVGSKVIVHTDHSALKYLMQKKDAKPRLLRWILLLQEFDIEVRDRKGIENGVADHLSR 860 Score = 55.0 bits (130), Expect = 9e-005 Identities = 44/149 (29%), Positives = 63/149 (41%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M +F ++ F Y + E +LR VL K + + K Sbjct: 587 APAIFERCMMSIFTDMIENFIEVFMDDFSVYGSSFEACLENLRKVLARCEEKNLVLNWEK 646 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F ++ + LGH +SG GI V+K KIE + S AL RFV FS Sbjct: 647 CHFMVQEGIVLGHKVSGAGIEVNKAKIEV------------MTSLQALDSVNLRFVKDFS 694 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFREL 9504 I+ PLT + V+F + C F ++ Sbjct: 695 KIARPLTALLCKDVKFDFNSECHDAFNQI 723 >gb|AAF79618.1|AC027665_19 (AC027665) F5M15.26 [Arabidopsis thaliana] Length = 1838 Score = 176 bits (441), Expect = 3e-041 Identities = 118/398 (29%), Positives = 192/398 (47%), Gaps = 9/398 (2%) Frame = -2 Query: 51688 LDTQPIFIPPY----RMAPAELKELKEQLRDLLEKGFIRPSTSP-WGAPVLFVRKKDGSL 51524 L+ P F P ++ P + + E++ LL+ G I P W A + V+KK+G Sbjct: 816 LNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKW 875 Query: 51523 QMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAF 51344 ++ ++Y LNK K+ YPLP ID L + G S +D S Y+++ + + D KT+F Sbjct: 876 RVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSF 935 Query: 51343 WTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHL 51164 T G Y ++V+SFG+ NA A + +N++ + V V++DD+LV S E+H +HL Sbjct: 936 VTDRGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHL 995 Query: 51163 RTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEV 50984 VL + +KC F +TS FLG+++ GI + ++I A+ P EV Sbjct: 996 SKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREV 1055 Query: 50983 RSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLP 50804 + RF+ + P L ++ A+F W E +F LKD L+ P L P Sbjct: 1056 QRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKP 1115 Query: 50803 EGPDGYVIYCDTSGVGLGCVLMQHG----KVIAYASRQLRKHENNYPTHDLKLEIVVHAL 50636 E + +Y S + VL++ + I Y S+ L + E YP + VV + Sbjct: 1116 EVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSA 1175 Query: 50635 KIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVD 50495 + R Y + + TD + L+ R +W L +YD+D Sbjct: 1176 RKLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSEYDID 1221 Score = 82.7 bits (201), Expect(2) = 3e-014 Identities = 69/261 (26%), Positives = 120/261 (45%), Gaps = 3/261 (1%) Frame = -3 Query: 50142 QVMGEEHSACYSINPGSTKMYHDLRCL-YWWDGMKKDIAEFVAQCSNCQ*-VKIEHQKSG 49969 ++M E H + G + L+ L ++W M D F A+C CQ HQ + Sbjct: 1484 EIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTE 1543 Query: 49968 GLLQEIE-IPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 L + P +W M D + +P ++ K I V+ D TK T A D Sbjct: 1544 LLRAGVAPYPFMRWAM---DIVGPMPASRQK-RFILVMTDYFTKWVE-AESYATIRANDV 1598 Query: 49791 VRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTI 49612 + I+ HG+P II+D G+QF + + +F ++N ST +PQ +G++E T Sbjct: 1599 QNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATN 1658 Query: 49611 QTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVG 49432 +T+ L+ + + KG+W D L + ++Y S+ P+ YG + +P +VG Sbjct: 1659 KTILSGLKKRLDEKKGAWADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPA---EVG 1715 Query: 49431 ETKLIGPDMIQQVVDKVKLIQERL 49360 + L M++ +++ +RL Sbjct: 1716 YSSLRRSMMVKNPELNDRMMLDRL 1739 Score = 41.0 bits (94), Expect(2) = 4e-004 Identities = 23/87 (26%), Positives = 39/87 (44%) Frame = +2 Query: 8780 WGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGC 8959 W A + ++KK R+C+DY N K YPL I ++ SG Sbjct: 861 WLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGY 920 Query: 8960 HKMKVRECDVPKTNFIKRYGHYLFLVI 9040 +++ + + D KT+F+ G Y + V+ Sbjct: 921 NQILMHKDDQEKTSFVTDRGTYCYKVM 947 Score = 31.3 bits (69), Expect(2) = 4e-004 Identities = 25/118 (21%), Positives = 44/118 (37%) Frame = +1 Query: 9151 SWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY* 9330 S EDH L L + +K F + FLG++++ GI + ++I + Sbjct: 985 SLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAIL 1044 Query: 9331 SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFREL 9504 P P + + RF+ R + P + + QF + E F +L Sbjct: 1045 ELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKL 1102 Score = 23.9 bits (50), Expect(2) = 3e-014 Identities = 16/57 (28%), Positives = 25/57 (43%) Frame = -1 Query: 49334 HADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYEL 49164 H + + + F +GD V KV + GKL + G YQ+ + + YEL Sbjct: 1763 HYNQKVHNRHFDVGDLVLRKVFENTAEINA---GKLGANWEGSYQVSKIVRPGDYEL 1816 >gb|AAF18651.1|AC006570_1 (AC006570) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 622 Score = 175 bits (440), Expect = 4e-041 Identities = 113/324 (34%), Positives = 168/324 (50%), Gaps = 7/324 (2%) Frame = -2 Query: 51355 KTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEH 51176 KT F G + ++ +SFG+ NA F M +F F++ + VF+DD +S Sbjct: 165 KTTFTCPNGTFAYKRMSFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDDFSGFSSC---- 220 Query: 51175 ADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT 50996 +L VL + L + KC F + LGH I GI VD KI+ + P T Sbjct: 221 LLNLCRVLERCEETNLVLNWEKCHFMVHEGIVLGHKISGKGIEVDKAKIDVMIQLQPPKT 280 Query: 50995 PTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPF 50816 ++RSFL A +YRRF++ F+ I+ PL RL K +F + C ++F L+K+ L AP Sbjct: 281 VKDIRSFLGHAEFYRRFIKDFSKIARPLTRLLCKETEFNFDEDCLKAFHLIKETLVSAPI 340 Query: 50815 LNLPEGPDGYVIYCDTSGVGLGCVLMQ----HGKVIAYASRQLRKHENNYPTHDLKLEIV 50648 P + I CD +G VL Q VI YASR + + + Y T + +L V Sbjct: 341 FQAPNWDHPFEIMCDAFDYAVGAVLDQKIDDKLHVIYYASRTMDEAQTRYATIEKELLAV 400 Query: 50647 VHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKAN 50468 V A + R YL GF V +Y DH +L++I+ +KE R RW+ LL+++D++I+ G N Sbjct: 401 VFAFEKIRSYLVGFKVKVYIDHAALRHIYAKKETKSRLLRWILLLQEFDMEIIDKKGVEN 460 Query: 50467 VVVDALSRKSMGS---LTDVQPEMREMVRDI 50384 V D LSR + + D PE + M D+ Sbjct: 461 GVADHLSRMRIEDSVPIDDTMPEEQLMFYDL 491 Score = 68.7 bits (165), Expect = 7e-009 Identities = 50/174 (28%), Positives = 73/174 (41%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP F M +F F++ +S +L VL+ + + K Sbjct: 187 APGTFQRSMTSIFSDFIEEIMEVFMDDFSGFS----SCLLNLCRVLERCEETNLVLNWEK 242 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + + LGH ISG+GI VDK KI+ P K+I SFL A +YRRF+ FS Sbjct: 243 CHFMVHEGIVLGHKISGKGIEVDKAKIDVMIQLQPPKTVKDIRSFLGHAEFYRRFIKDFS 302 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHA 9579 I+ PLT++ + +F E C F + + H F + C A Sbjct: 303 KIARPLTRLLCKETEFNFDEDCLKAFHLIKETLVSAPIFQAPNWDHPFEIMCDA 356 >gb|AAC28237.1| (AF076274) contains similarity to reverse trancriptase (Pfam: rvt.hmm, score: 96.80) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm, score: 14.43) [Arabidopsis thaliana] Length = 315 Score = 175 bits (438), Expect = 7e-041 Identities = 81/168 (48%), Positives = 117/168 (69%) Frame = -2 Query: 51604 LEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGA 51425 + KG+IR S SP PVL V KKDG+ +M ++ + +N +T+K R+P+PR+ D+ D+L GA Sbjct: 125 IHKGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGA 184 Query: 51424 KCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKP 51245 FSK+DLRS YH+VR+RE D KTAF T+ G Y+ V+ FG+TNA + FM LMN+V + Sbjct: 185 IIFSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRS 244 Query: 51244 FLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEF 51101 F+ FV+V+ DDIL+Y++S +H L +L+ L+ + LYA KC F Sbjct: 245 FIGKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKKCTF 292 Score = 62.5 bits (149), Expect(2) = 1e-012 Identities = 35/102 (34%), Positives = 55/102 (53%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 K +I +++SP VL + KK R+C+D NN+T K ++P+ R+Y Sbjct: 127 KGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGAII 186 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 ++LRSG H++++RE D KT F + G Y LV+ LT Sbjct: 187 FSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLT 228 Score = 39.1 bits (89), Expect(2) = 1e-012 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ FM LM++V + F+ F Y+ + DH L ++L+TLR + K Sbjct: 230 APSTFMRLMNQVLRSFIGKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKK 289 Query: 9238 *EFC 9249 FC Sbjct: 290 CTFC 293 >emb|CAB77891.1| (AL161499) putative transposon protein [Arabidopsis thaliana] Length = 315 Score = 175 bits (438), Expect = 7e-041 Identities = 81/168 (48%), Positives = 117/168 (69%) Frame = -2 Query: 51604 LEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGA 51425 + KG+IR S SP PVL V KKDG+ +M ++ + +N +T+K R+P+PR+ D+ D+L GA Sbjct: 125 IHKGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGA 184 Query: 51424 KCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKP 51245 FSK+DLRS YH+VR+RE D KTAF T+ G Y+ V+ FG+TNA + FM LMN+V + Sbjct: 185 IIFSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQVLRS 244 Query: 51244 FLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEF 51101 F+ FV+V+ DDIL+Y++S +H L +L+ L+ + LYA KC F Sbjct: 245 FIGKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKKCTF 292 Score = 62.5 bits (149), Expect(2) = 1e-012 Identities = 35/102 (34%), Positives = 55/102 (53%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 K +I +++SP VL + KK R+C+D NN+T K ++P+ R+Y Sbjct: 127 KGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDELSGAII 186 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVIFIVLT 9055 ++LRSG H++++RE D KT F + G Y LV+ LT Sbjct: 187 FSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLT 228 Score = 39.1 bits (89), Expect(2) = 1e-012 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ FM LM++V + F+ F Y+ + DH L ++L+TLR + K Sbjct: 230 APSTFMRLMNQVLRSFIGKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKK 289 Query: 9238 *EFC 9249 FC Sbjct: 290 CTFC 293 >dbj|BAB08213.2| (AP002539) Similar to Arabidopsis thaliana chromosome II BAC F26H6; putative retroelement pol polyprotein (AC006920) [Oryza sativa] Length = 2876 Score = 173 bits (435), Expect = 2e-040 Identities = 119/423 (28%), Positives = 198/423 (46%), Gaps = 8/423 (1%) Frame = -2 Query: 51766 EFPDVFXXXXXXXXXXXKIEFTIDVLLDTQ--PIFIPPYRMAPAELKELKEQLRDLLEKG 51593 EF D F T + +D Q P+ PP R+ P ++ ++ L+ G Sbjct: 1812 EFRDCFAWTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAEVDRLINVG 1871 Query: 51592 FIRPSTSP-WGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCF 51416 FI+ P W A ++ V KK+G +++ ++++ LN+ K+ +PLP + + D G Sbjct: 1872 FIKEIQYPRWLANIVPVEKKNGQVRVCVDFRDLNRACPKDDFPLPITEMVVDSTTGYGAL 1931 Query: 51415 SKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLD 51236 S Y+++++ D TAF T G++ + V+ FG+ NA A + M V + Sbjct: 1932 S------GYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQRAMQFVLDDLIH 1985 Query: 51235 MFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGAD 51056 V +VDD++V ++ E H + LR V L+ +L KC F + S FLG +I Sbjct: 1986 HSVECYVDDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVFLGFVIRHR 2045 Query: 51055 GIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*W 50876 GI ++ +KI+A+ P ++R Y RRF+ + P +L +K F W Sbjct: 2046 GIEIEPKKIKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLMKKGTPFVW 2105 Query: 50875 TNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQH---GKVIA--YA 50711 C+ F +K L P L P ++Y T +G +L QH GK +A Y Sbjct: 2106 DEECQNGFDSIKRYLLNPPVLAAPVKGRPLILYIATQPASIGALLAQHNDEGKEVACYYL 2165 Query: 50710 SRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQR 50531 SR + E NY + ++ ALK RHY+ + + ++Y+ Q L R Sbjct: 2166 SRTMVGAEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRYVLSQPVLTGRLG 2225 Query: 50530 RWLELLKDYDV 50498 +W L+ +YD+ Sbjct: 2226 KWALLMMEYDI 2236 Score = 83.5 bits (203), Expect = 3e-013 Identities = 64/231 (27%), Positives = 103/231 (43%), Gaps = 4/231 (1%) Frame = -3 Query: 50142 QVMGEEHSACYSINPGSTKMYHDLRCL-YWWDGMKKDIAEFVAQCSNCQ*V-KIEHQKSG 49969 +V+ E H + KMYH +R + Y+W G+ D + C CQ +HQ Sbjct: 2518 RVLQEVHHGVCGGHQSGPKMYHSIRLVGYYWPGIMADCLKTAKTCHGCQIHDNFKHQPPA 2577 Query: 49968 GLLQEIEIPTWKWEMINMDFITGL--PRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 L +P+W ++ +D I GL P + I D +K A +P+R S+ D Sbjct: 2578 PL--HPTVPSWPFDAWGIDVI-GLINPPSSRGHRFILTATDYFSKWAEAVPLREVKSS-D 2633 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 + R I+ GVP I SD F + F + + N ST ++PQ +G +E Sbjct: 2634 VINFLERHIIYRFGVPHRITSDNAKAFKSQKIYRFMEKYKIKWNYSTGYYPQANGMAEAF 2693 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPI 49450 +TL +L+ ++ + W D L +AY + Q PY +YG + P+ Sbjct: 2694 NKTLGKILKKTVDKHRRDWHDRLYEALWAYRVTVRTPTQATPYSLVYGNEAVLPL 2748 Score = 53.9 bits (127), Expect = 2e-004 Identities = 34/116 (29%), Positives = 54/116 (46%) Frame = +1 Query: 9163 EDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPR 9342 E H DLRIV + LR + + K F ++ VFLG +I GI ++ +KI++ + P Sbjct: 2003 EHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVFLGFVIRHRGIEIEPKKIKAILNMPP 2062 Query: 9343 PIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 P K++ Y RRF+ S P +K+ F E C+ F + + Sbjct: 2063 PQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLMKKGTPFVWDEECQNGFDSIKR 2118 >dbj|BAA96774.2| (AP002521) Similar to Arabidopsis thaliana chromosome II BAC F26H6; putative retroelement pol polyprotein (AC006920) [Oryza sativa] Length = 2876 Score = 173 bits (435), Expect = 2e-040 Identities = 119/423 (28%), Positives = 198/423 (46%), Gaps = 8/423 (1%) Frame = -2 Query: 51766 EFPDVFXXXXXXXXXXXKIEFTIDVLLDTQ--PIFIPPYRMAPAELKELKEQLRDLLEKG 51593 EF D F T + +D Q P+ PP R+ P ++ ++ L+ G Sbjct: 1812 EFRDCFAWTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAEVDRLINVG 1871 Query: 51592 FIRPSTSP-WGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCF 51416 FI+ P W A ++ V KK+G +++ ++++ LN+ K+ +PLP + + D G Sbjct: 1872 FIKEIQYPRWLANIVPVEKKNGQVRVCVDFRDLNRACPKDDFPLPITEMVVDSTTGYGAL 1931 Query: 51415 SKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLD 51236 S Y+++++ D TAF T G++ + V+ FG+ NA A + M V + Sbjct: 1932 S------GYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQRAMQFVLDDLIH 1985 Query: 51235 MFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGAD 51056 V +VDD++V ++ E H + LR V L+ +L KC F + S FLG +I Sbjct: 1986 HSVECYVDDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVFLGFVIRHR 2045 Query: 51055 GIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*W 50876 GI ++ +KI+A+ P ++R Y RRF+ + P +L +K F W Sbjct: 2046 GIEIEPKKIKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLMKKGTPFVW 2105 Query: 50875 TNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQH---GKVIA--YA 50711 C+ F +K L P L P ++Y T +G +L QH GK +A Y Sbjct: 2106 DEECQNGFDSIKRYLLNPPVLAAPVKGRPLILYIATQPASIGALLAQHNDEGKEVACYYL 2165 Query: 50710 SRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQR 50531 SR + E NY + ++ ALK RHY+ + + ++Y+ Q L R Sbjct: 2166 SRTMVGAEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRYVLSQPVLTGRLG 2225 Query: 50530 RWLELLKDYDV 50498 +W L+ +YD+ Sbjct: 2226 KWALLMMEYDI 2236 Score = 83.5 bits (203), Expect = 3e-013 Identities = 64/231 (27%), Positives = 103/231 (43%), Gaps = 4/231 (1%) Frame = -3 Query: 50142 QVMGEEHSACYSINPGSTKMYHDLRCL-YWWDGMKKDIAEFVAQCSNCQ*V-KIEHQKSG 49969 +V+ E H + KMYH +R + Y+W G+ D + C CQ +HQ Sbjct: 2518 RVLQEVHHGVCGGHQSGPKMYHSIRLVGYYWPGIMADCLKTAKTCHGCQIHDNFKHQPPA 2577 Query: 49968 GLLQEIEIPTWKWEMINMDFITGL--PRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 L +P+W ++ +D I GL P + I D +K A +P+R S+ D Sbjct: 2578 PL--HPTVPSWPFDAWGIDVI-GLINPPSSRGHRFILTATDYFSKWAEAVPLREVKSS-D 2633 Query: 49794 YVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERT 49615 + R I+ GVP I SD F + F + + N ST ++PQ +G +E Sbjct: 2634 VINFLERHIIYRFGVPHRITSDNAKAFKSQKIYRFMEKYKIKWNYSTGYYPQANGMAEAF 2693 Query: 49614 IQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPI 49450 +TL +L+ ++ + W D L +AY + Q PY +YG + P+ Sbjct: 2694 NKTLGKILKKTVDKHRRDWHDRLYEALWAYRVTVRTPTQATPYSLVYGNEAVLPL 2748 Score = 53.9 bits (127), Expect = 2e-004 Identities = 34/116 (29%), Positives = 54/116 (46%) Frame = +1 Query: 9163 EDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPR 9342 E H DLRIV + LR + + K F ++ VFLG +I GI ++ +KI++ + P Sbjct: 2003 EHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVFLGFVIRHRGIEIEPKKIKAILNMPP 2062 Query: 9343 PIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 P K++ Y RRF+ S P +K+ F E C+ F + + Sbjct: 2063 PQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLMKKGTPFVWDEECQNGFDSIKR 2118 >gb|AAG13430.1|AC051634_11 (AC051634) putative plant disease resistance polyprotein; 68876-72133 [Oryza sativa] Length = 921 Score = 171 bits (429), Expect = 8e-040 Identities = 85/218 (38%), Positives = 127/218 (57%) Frame = -3 Query: 50124 HSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEI 49945 H++ + G YH ++ L+ W G+K D+ FV QC CQ K EH + GLL + I Sbjct: 486 HASALGGHSGIAATYHQIKKLFAWPGLKLDVENFVKQCQVCQQAKHEHCRLPGLLAPLPI 545 Query: 49944 PTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIV 49765 P W+ I+MDFI GLPR+ ++I V++DR TK A+F+P+ ++A L + + Sbjct: 546 PKEAWQDISMDFIEGLPRSDGY-NAILVVVDRFTKYANFIPLCHPFTASQVAHLVDKTVF 604 Query: 49764 RLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRA 49585 + HG+P SI+SDR FT+ FW + TQ+ +ST +HPQ DG++ER Q LE LR Sbjct: 605 KTHGIPRSIVSDRDRLFTSKFWTTLFATWDTQLQMSTAYHPQIDGQTERVNQCLEMYLRC 664 Query: 49584 SIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 W + L EF YN +YH+S+ +P++AL+G Sbjct: 665 MTQANPKKWSHWIHLAEFWYNTNYHTSLGCSPHKALFG 702 Score = 113 bits (281), Expect(2) = 2e-027 Identities = 85/311 (27%), Positives = 151/311 (48%), Gaps = 5/311 (1%) Frame = +2 Query: 10121 GVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFV 10300 G++++Q ++ + + G +++ H++ SG Y +++++ GLK D+ FV Sbjct: 461 GIIRFQNKIWIGSNAGLHTKLIQAFHASALGGHSGIAATYHQIKKLFAWPGLKLDVENFV 520 Query: 10301 AMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTK 10480 QQ K EH RL GL + +P W+ I+MDFI+ S +N+I V+VDR TK Sbjct: 521 KQCQVCQQAKHEHCRLPGLLAPLPIPKEAWQDISMDFIEGLPRS-DGYNAILVVVDRFTK 579 Query: 10481 SSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN* 10660 ++F+ + A A L + V + HG I+S+R FT++ W + + ++L Sbjct: 580 YANFIPLCHPFTASQVAHLVDKTVFKTHGIPRSIVSDRDRLFTSKFWTTLFATWDTQLQM 639 Query: 10661 VLLFILK-EVEKQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEA 10837 + + + + + + LE LR W + L E+ YN +YH+S+ +P++A Sbjct: 640 STAYHPQIDGQTERVNQCLEMYLRCMTQANPKKWSHWIHLAEFWYNTNYHTSLGCSPHKA 699 Query: 10838 LYGRRGRYHIRLFKVGESGLIGL----DVVHQIMDKLKVIQERMMTTQSCKKFNTDIRRR 11005 L+G Y +V + L L DV + + +Q+++ Q K D R Sbjct: 700 LFGVDPHYS----QVPDLTLATLPDVVDVQTERQHLSEFLQQQLTRAQLRMKNKADKGRS 755 Query: 11006 PLECEVDDWVYLKV*P 11053 V D V+LK+ P Sbjct: 756 DRVFAVGDAVFLKLQP 771 Score = 69.9 bits (168), Expect = 3e-009 Identities = 51/149 (34%), Positives = 82/149 (54%), Gaps = 3/149 (2%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRK-GKLSPRYIGPYQIVRWIGKVAYEL 49164 ++ AD R D F +GD VFLK+ P ++R KL+ ++ GP+ ++ IG AY L Sbjct: 747 KNKADKGRSDRVFAVGDAVFLKLQPYAQSSVVNRPYPKLAYKFFGPFTVLERIGVAAYRL 806 Query: 49163 DLPSDLEVVHPVFHVSMLRKCIGDPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRRLRTK 48984 DLP+ VHPVFHVS L+ + D + V+ V+ + + + P A+L+R R ++ Sbjct: 807 DLPAS-STVHPVFHVSQLKAQVPDHTPVYTSLPSPVVLD-AADVVPEAILER--RLVKRG 862 Query: 48983 DVASVKVL--WQNNNREEMTREVEDEMKNKYP 48894 + A V+VL W + T E +K ++P Sbjct: 863 NAAHVQVLLKWSLLPADHATWEDYHVVKTRFP 894 Score = 62.1 bits (148), Expect = 7e-007 Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 4/155 (2%) Frame = -2 Query: 50875 TNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLR 50696 T+A + +F LK ++ P L LP + + D GLG VL Q G IAY S+ L Sbjct: 265 TDATQLAFDQLKTAMSNTPVLALPYFQLPFTLETDACAYGLGAVLSQQGHPIAYYSKTLG 324 Query: 50695 KHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLEL 50516 ++ + ++ + WR YL I TDHKSL ++ + Q++ + Sbjct: 325 PVNQKLSIYEKEFLAIMMVVDKWRCYLQRGPFIIKTDHKSLCHLDDEILGTELQQKAMTK 384 Query: 50515 LKDYDVDILYHLGKANVVVDALSRKSMGS----LTDVQP 50411 L Y G N+V DALSR S L+ VQP Sbjct: 385 LMGLQYSFQYKRGVDNIVADALSRMPSSSQFCALSVVQP 423 Score = 40.6 bits (93), Expect(2) = 0.39 Identities = 27/83 (32%), Positives = 40/83 (47%) Frame = +3 Query: 42468 VQDSLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKISSKTIHRGRILK*DGPF 42647 +Q L +A RMKN AD+ F VG+ V +KL P+ + ++ + K GPF Sbjct: 735 LQQQLTRAQLRMKNKADKGRSDRVFAVGDAVFLKLQPYAQSSVVNRPYPK-LAYKFFGPF 793 Query: 42648 DVIERAGEVSCMLKLSEILKISP 42716 V+ER G + L L + P Sbjct: 794 TVLERIGVAAYRLDLPASSTVHP 816 Score = 37.1 bits (84), Expect(2) = 2e-027 Identities = 17/41 (41%), Positives = 25/41 (60%) Frame = +1 Query: 11086 KLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISML 11208 KL +F G + + +R+G Y L+LP + VH VFH+S L Sbjct: 784 KLAYKFFGPFTVLERIGVAAYRLDLPAS-STVHPVFHVSQL 823 Score = 21.2 bits (43), Expect(2) = 0.39 Identities = 8/10 (80%), Positives = 8/10 (80%) Frame = +1 Query: 42712 HPTFHVSFLK 42741 HP FHVS LK Sbjct: 815 HPVFHVSQLK 824 >gb|AAC48336.1| (AF017040) Pol [Dictyostelium discoideum] Length = 1077 Score = 169 bits (424), Expect = 3e-039 Identities = 125/446 (28%), Positives = 223/446 (49%), Gaps = 38/446 (8%) Frame = -2 Query: 51778 LVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLE 51599 ++VD+ PD+ + D +P Y + ++E + ++ Sbjct: 70 VIVDKLPDIPDQINNSRRGNIIHNIILKKDQDVEPTKKQIYYSTDDHKRHVEEMVLKFID 129 Query: 51598 KGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKC 51419 G I+ S S + +P++ ++K+D S ++ +Y+QLNKVTV++ +P +D L +Q + +K Sbjct: 130 LGIIKRSESNYSSPIMLLKKRD-SWRVVHDYRQLNKVTVRDDHPFTPVDSLLNQCKDSKL 188 Query: 51418 FSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFL 51239 FSK D+ Y +V + TAF T G +++ + G+ N+ + F LM +F Sbjct: 189 FSKFDMIMGYFQVLINPEHAKYTAFITHIGKFEYTRMPQGLVNSPSTFARLMVEIFGKIK 248 Query: 51238 DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMF---SKCEFWLTSLAFLGHI 51068 + + + DD+LV+S+ ++ H ++R+L + + Y +F K E T + FLG Sbjct: 249 SL--LQYFDDLLVHSKL--DYMVHFIEIIRMLLYCRKYLLFISREKSEMLKTEVDFLGFH 304 Query: 51067 IGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAA 50888 I DGI K+ A+ P E + L L ++RR +E +A + L + ++ Sbjct: 305 IHKDGISPRAAKVRAISELPEPRNAKEAEAALGLFGFFRRHIENYAEKTYHLSKESKGKN 364 Query: 50887 KF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYV------------------------- 50783 K ++ + F LK + + +P D + Sbjct: 365 KKTLSDESLKEFNNLKKEFEGENIVAIPIEQDNSIPIDIEKVKASTDMPIHSDNNNLNNG 424 Query: 50782 ---IYCDTSGVGLGCVLMQ----HGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWR 50624 +YCD S L VL Q KVI + R+L + Y D + ++ +LK ++ Sbjct: 425 SFHLYCDVSDKALSGVLYQIQGNKFKVIWFHCRKLTDTQKRYSIGDREFLSIIDSLKKFQ 484 Query: 50623 HYLYGFHVDIYTDHKSLQYIFKQ---KELYLRQRRWLELLKDYDVDILYHLGKANVVVDA 50453 H L G V IYTDH++L YI + K RQ +++ +K++D ++ + GK N + D Sbjct: 485 HLLIGKKVSIYTDHQNLTYIINKSNDKPFTKRQDNYMKYIKEFDYELRHISGKKNGIADF 544 Query: 50452 LSRK 50441 LSRK Sbjct: 545 LSRK 548 Score = 133 bits (331), Expect = 3e-028 Identities = 73/234 (31%), Positives = 132/234 (56%), Gaps = 7/234 (2%) Frame = -3 Query: 50139 VMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLL 49960 V+ E H YS + Y+++R Y++ M I ++ C+ CQ + I ++K G+L Sbjct: 611 VIREYHDTKYSGHHALDITYNNIRQDYYFKEMFSIIKRYIKSCATCQ-LNI-NRKDNGIL 668 Query: 49959 QEIEIPTWKWEMINMDFITGLPRTQ*-------K*DSIWVIIDRLTKSAHFLPVRTTYSA 49801 Q +EIP W I++DF++ LP+T + D + VI+ RL+K H +P T A Sbjct: 669 QSLEIPFEVWRDISIDFLS-LPKTMYAINGFTVEVDQVCVIVCRLSKMVHIVPCHKTIDA 727 Query: 49800 EDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSE 49621 + +L + + RLHG P +I+SDR +F + W + K + +++ ++ Q DG++E Sbjct: 728 QHTAQLLLNHVFRLHGYPRTIVSDRDPRFLSEIWERWAKTMDSKLKMTVAHRAQADGQTE 787 Query: 49620 RTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWF 49441 R + + +L + ++ +W D +PLIEFA N+ S +M+P++ +YG +P+ F Sbjct: 788 RMNREIIRILTKASTEYGENWSDIIPLIEFAMNSSMSKSTKMSPFQIVYGFNPPTPVNHF 847 Query: 49440 D 49438 + Sbjct: 848 N 848 Score = 87.0 bits (212), Expect = 2e-014 Identities = 65/268 (24%), Positives = 139/268 (51%), Gaps = 17/268 (6%) Frame = +2 Query: 10043 DQDPIFLVLKENVKNQRVLAFEQGGDGVLKYQERLCVPNMDGHQDLIM----------EK 10192 D+ + + +E + +Q +L ++ + ++ +C + DG + LI+ + Sbjct: 555 DESFLNKIKEEQINSQWLLEMKKNPNLCIEEINDICYLSEDGFKKLIIIDKETIHTVIRE 614 Query: 10193 SHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQRLGGLAKNIE 10372 H T +S Y +R+ Y K + I +++ + Q + + +++ G+ +++E Sbjct: 615 YHDTKYSGHHALDITYNNIRQDYYFKEMFSIIKRYIKSCATCQ-LNI-NRKDNGILQSLE 672 Query: 10373 LP*WKWEIINMDFIK------CFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAK 10534 +P W I++DF+ + + + VIV RL+K H + T A+ A+ Sbjct: 673 IPFEVWRDISIDFLSLPKTMYAINGFTVEVDQVCVIVCRLSKMVHIVPCHKTIDAQHTAQ 732 Query: 10535 LYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILK-EVEKQCTIKT 10711 L + V RLHG+ I+S+R F +++W+ + K+ SKL + + + + + + Sbjct: 733 LLLNHVFRLHGYPRTIVSDRDPRFLSEIWERWAKTMDSKLKMTVAHRAQADGQTERMNRE 792 Query: 10712 LEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYG 10846 + +L ++ NW D +PLIE++ N+S S +M+P++ +YG Sbjct: 793 IIRILTKASTEYGENWSDIIPLIEFAMNSSMSKSTKMSPFQIVYG 837 Score = 38.7 bits (88), Expect = 8.0 Identities = 21/55 (38%), Positives = 33/55 (59%) Frame = +3 Query: 9594 KVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL*YV 9758 KVI + + L +K Y D E S++ SLK + H L G +V I+TD+++L Y+ Sbjct: 450 KVIWFHCRKLTDTQKRYSIGDREFLSIIDSLKKFQHLLIGKKVSIYTDHQNLTYI 504 >gb|AAC39021.1| (AF049230) Pol [Dictyostelium discoideum] Length = 1116 Score = 169 bits (424), Expect = 3e-039 Identities = 125/446 (28%), Positives = 223/446 (49%), Gaps = 38/446 (8%) Frame = -2 Query: 51778 LVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLE 51599 ++VD+ PD+ + D +P Y + ++E + ++ Sbjct: 70 VIVDKLPDIPDQINNSRRGNIIHNIILKKDQDVEPTKKQIYYSTDDHKRHVEEMVLKFID 129 Query: 51598 KGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKC 51419 G I+ S S + +P++ ++K+D S ++ +Y+QLNKVTV++ +P +D L +Q + +K Sbjct: 130 LGIIKRSESNYSSPIMLLKKRD-SWRVVHDYRQLNKVTVRDDHPFTPVDSLLNQCKDSKL 188 Query: 51418 FSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFL 51239 FSK D+ Y +V + TAF T G +++ + G+ N+ + F LM +F Sbjct: 189 FSKFDMIMGYFQVLINPEHAKYTAFITHIGKFEYTRMPQGLVNSPSTFARLMVEIFGKIK 248 Query: 51238 DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMF---SKCEFWLTSLAFLGHI 51068 + + + DD+LV+S+ ++ H ++R+L + + Y +F K E T + FLG Sbjct: 249 SL--LQYFDDLLVHSKL--DYMVHFIEIIRMLLYCRKYLLFISREKSEMLKTEVDFLGFH 304 Query: 51067 IGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAA 50888 I DGI K+ A+ P E + L L ++RR +E +A + L + ++ Sbjct: 305 IHKDGISPRAAKVRAISELPEPRNAKEAEAALGLFGFFRRHIENYAEKTYHLSKESKGKN 364 Query: 50887 KF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYV------------------------- 50783 K ++ + F LK + + +P D + Sbjct: 365 KKTLSDESLKEFNNLKKEFEGENIVAIPIEQDNSIPIDIEKVKASTDMPIHSDNNNLNNG 424 Query: 50782 ---IYCDTSGVGLGCVLMQ----HGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWR 50624 +YCD S L VL Q KVI + R+L + Y D + ++ +LK ++ Sbjct: 425 SFHLYCDVSDKALSGVLYQIQGNKFKVIWFHCRKLTDTQKRYSIGDREFLSIIDSLKKFQ 484 Query: 50623 HYLYGFHVDIYTDHKSLQYIFKQ---KELYLRQRRWLELLKDYDVDILYHLGKANVVVDA 50453 H L G V IYTDH++L YI + K RQ +++ +K++D ++ + GK N + D Sbjct: 485 HLLIGKKVSIYTDHQNLTYIINKSNDKPFTKRQDNYMKYIKEFDYELRHISGKKNGIADF 544 Query: 50452 LSRK 50441 LSRK Sbjct: 545 LSRK 548 Score = 133 bits (331), Expect = 3e-028 Identities = 73/234 (31%), Positives = 132/234 (56%), Gaps = 7/234 (2%) Frame = -3 Query: 50139 VMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLL 49960 V+ E H YS + Y+++R Y++ M I ++ C+ CQ + I ++K G+L Sbjct: 611 VIREYHDTKYSGHHALDITYNNIRQDYYFKEMFSIIKRYIKSCATCQ-LNI-NRKDNGIL 668 Query: 49959 QEIEIPTWKWEMINMDFITGLPRTQ*-------K*DSIWVIIDRLTKSAHFLPVRTTYSA 49801 Q +EIP W I++DF++ LP+T + D + VI+ RL+K H +P T A Sbjct: 669 QSLEIPFEVWRDISIDFLS-LPKTMYAINGFTVEVDQVCVIVCRLSKMVHIVPCHKTIDA 727 Query: 49800 EDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSE 49621 + +L + + RLHG P +I+SDR +F + W + K + +++ ++ Q DG++E Sbjct: 728 QHTAQLLLNHVFRLHGYPRTIVSDRDPRFLSEIWERWAKTMDSKLKMTVAHRAQADGQTE 787 Query: 49620 RTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWF 49441 R + + +L + ++ +W D +PLIEFA N+ S +M+P++ +YG +P+ F Sbjct: 788 RMNREIIRILTKASTEYGENWSDIIPLIEFAMNSSMSKSTKMSPFQIVYGFNPPTPVNHF 847 Query: 49440 D 49438 + Sbjct: 848 N 848 Score = 87.0 bits (212), Expect = 2e-014 Identities = 65/268 (24%), Positives = 139/268 (51%), Gaps = 17/268 (6%) Frame = +2 Query: 10043 DQDPIFLVLKENVKNQRVLAFEQGGDGVLKYQERLCVPNMDGHQDLIM----------EK 10192 D+ + + +E + +Q +L ++ + ++ +C + DG + LI+ + Sbjct: 555 DESFLNKIKEEQINSQWLLEMKKNPNLCIEEINDICYLSEDGFKKLIIIDKETIHTVIRE 614 Query: 10193 SHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQRLGGLAKNIE 10372 H T +S Y +R+ Y K + I +++ + Q + + +++ G+ +++E Sbjct: 615 YHDTKYSGHHALDITYNNIRQDYYFKEMFSIIKRYIKSCATCQ-LNI-NRKDNGILQSLE 672 Query: 10373 LP*WKWEIINMDFIK------CFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAK 10534 +P W I++DF+ + + + VIV RL+K H + T A+ A+ Sbjct: 673 IPFEVWRDISIDFLSLPKTMYAINGFTVEVDQVCVIVCRLSKMVHIVPCHKTIDAQHTAQ 732 Query: 10535 LYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILK-EVEKQCTIKT 10711 L + V RLHG+ I+S+R F +++W+ + K+ SKL + + + + + + Sbjct: 733 LLLNHVFRLHGYPRTIVSDRDPRFLSEIWERWAKTMDSKLKMTVAHRAQADGQTERMNRE 792 Query: 10712 LEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYG 10846 + +L ++ NW D +PLIE++ N+S S +M+P++ +YG Sbjct: 793 IIRILTKASTEYGENWSDIIPLIEFAMNSSMSKSTKMSPFQIVYG 837 Score = 38.7 bits (88), Expect = 8.0 Identities = 21/55 (38%), Positives = 33/55 (59%) Frame = +3 Query: 9594 KVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL*YV 9758 KVI + + L +K Y D E S++ SLK + H L G +V I+TD+++L Y+ Sbjct: 450 KVIWFHCRKLTDTQKRYSIGDREFLSIIDSLKKFQHLLIGKKVSIYTDHQNLTYI 504 >gb|AAD19780.1| (AC006528) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 841 Score = 166 bits (417), Expect = 2e-038 Identities = 129/424 (30%), Positives = 205/424 (47%), Gaps = 22/424 (5%) Frame = -2 Query: 51628 LKEQLRDLLEKGFIRP-STSPWGAPVLFVRKKDGSL------------------QMSIEY 51506 +K+++ LL+ G I P S S W +PV V KK G + +M I+Y Sbjct: 390 VKKEIMKLLDAGIIYPISDSTWVSPVHVVPKKGGVIVIKNEKNELIPTRTVTGHRMCIDY 449 Query: 51505 KQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGH 51326 ++LN T K+ +PL ID + ++L + +D + ++ + D KT F YG Sbjct: 450 RKLNSATRKDNFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTFTCPYGT 509 Query: 51325 YDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 + +R + FG+ NA A F M +F ++ F+ VF+DD LV R E++H Sbjct: 510 FAYRRMPFGLCNAPATFQHCMKYIFSDMIEDFMEVFIDDFLVLQRCEDKH---------- 559 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 L + K F + LGH I G+ VD KIE ++ FL Sbjct: 560 -----LVLNWEKSHFMVRDGIVLGHKISEKGVEVDRAKIEIMR-------------FLGH 601 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 A +YRRF++ F+ I+ P +L K K + + C ++F ++K+ L A + PE + Sbjct: 602 AGFYRRFIKDFSKIARPCTQLLCKEQKSEFDDTCLQAFNIVKESLVSALIVQPPEWELPF 661 Query: 50785 VIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGF 50606 + CD S +G VL Q D KL + +A + L G Sbjct: 662 EVICDASDYVVGAVLGQR--------------------KDKKLHAIYYASRT----LDGA 697 Query: 50605 HVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSMGSL 50426 V ++T H +L+Y+ +K+ R RW+ LL+D+D++I G N V D LSR Sbjct: 698 QVIVHTVHAALRYLLSKKDAKPRLLRWILLLQDFDLEIKDKKGIENEVADNLSR------ 751 Query: 50425 TDVQPEMREMVRDI---QRLSSLGVC 50357 VQ E+ ++RDI + L+S+ C Sbjct: 752 LRVQEEV--LMRDILPGENLASIEDC 775 Score = 49.2 bits (115), Expect(2) = 6e-006 Identities = 38/129 (29%), Positives = 56/129 (42%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M +F ++ F D +VLQ +K + + K Sbjct: 522 APATFQHCMKYIFSDMIEDFMEVFI---------------DDFLVLQRCEDKHLVLNWEK 566 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F ++ + LGH IS +G+ VD+ KIE I FL A +YRRF+ FS Sbjct: 567 SHFMVRDGIVLGHKISEKGVEVDRAKIE-------------IMRFLGHAGFYRRFIKDFS 613 Query: 9418 SISSPLTKI 9444 I+ P T++ Sbjct: 614 KIARPCTQL 622 Score = 29.3 bits (64), Expect(2) = 6e-006 Identities = 18/69 (26%), Positives = 29/69 (41%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+CIDY + N+ T K +PL I ++ G ++ + D KT F Sbjct: 444 RMCIDYRKLNSATRKDNFPLSFIDQMLERLSNQPYYCFLDGYLGFFQILIHPDDQEKTTF 503 Query: 9005 IKRYGHYLF 9031 YG + + Sbjct: 504 TCPYGTFAY 512 >gb|AAB71256.1| (AF026205) contains similarity to Pfam domains PF00552 (integrase, Score=16.8, E-value=0.00032, N=1), PF00078 (rvt, Score=118.8, E-value=3.3e-32, N=1) and PF00098 (zf-CCHC, Score=28.7, E-value=4.4e-05, N=1) [Caenorhabditis elegans] Length = 1350 Score = 166 bits (415), Expect = 4e-038 Identities = 125/462 (27%), Positives = 227/462 (49%), Gaps = 18/462 (3%) Frame = -2 Query: 51829 LVRVHDINAEAPTLQSVLVVDEFPDVFXXXXXX----XXXXXKIEFTIDVLLDTQPIFIP 51662 + V ++N E + + + +P+VF E + V +P+ Sbjct: 295 VTEVVEVNQEEASRVELALKQAYPEVFTEGLGLCCKEDAKFRVNETAVPVFKRARPV--- 351 Query: 51661 PYRMAPAELKELKEQLRDLLEKGFIRPST-SPWGAPVLFVRKKD-GSLQMSIEYK--QLN 51494 PY L+ ++++L LL+ + P T S W AP++ +RKKD G +++ ++K LN Sbjct: 352 PY----GSLQAVEQELNRLLDLEVLEPITHSDWAAPIVVIRKKDTGKVRVCADFKCSGLN 407 Query: 51493 KVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFR 51314 ++ +PLP DDLF LQG FSKIDL+ +Y ++ + T G + +R Sbjct: 408 NSLIEEIHPLPTSDDLFGTLQGC-IFSKIDLKDAYLQIALDSESQKLAVINTHKGLFKYR 466 Query: 51313 VLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQ 51134 ++FG+ A A F +++++ V ++DD++V + S EEH L +L+ ++ Sbjct: 467 RMTFGLKPAPAKFQKIIDKMIAGLPG--VAAYLDDVIVSANSLEEHEKVLHELLKRIKDY 524 Query: 51133 KLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YY 50954 KC F + + FLG II G R D +K +++ PT ++ SFL +Y Sbjct: 525 GFRISPEKCNFAQSEITFLGFIIDKRGRRPDPKKTSVIRSMKAPTDQKQLMSFLGAICFY 584 Query: 50953 RRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYC 50774 RFV K + + PL +L +K A + WT+ +++F L+ + + L+ ++ Sbjct: 585 GRFVPKMSELRGPLDKLLKKDADWIWTDVEQKAFEELRKAVADSTMLSHFNSSWPIIVAA 644 Query: 50773 DTSGVGLGCVLMQHGK-----VIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYG 50609 D S G+G V++ IA+ +R L + E Y + + +++ +K +++G Sbjct: 645 DASKYGIGGVILHVNPDGVEVPIAHFARSLTETEKRYSQIEKEALALIYTVKKSHKFVFG 704 Query: 50608 FHVDIYTDHKSLQYIF-KQKELYLRQR----RWLELLKDYDVDILYHLGKANVVVDALSR 50444 + TDH+ L +F ++L + + RW L YD ++ Y + D LSR Sbjct: 705 RRFKLQTDHRPLLALFGDNRDLPVHSQNRIVRWATTLMSYDFELSYVATEKFAKADWLSR 764 Score = 75.7 bits (183), Expect = 6e-011 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 5/232 (2%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 L+ +V+ + H +PG +M +W G+ KD+ + V C NCQ E K Sbjct: 864 LQMKVLRQLHEG----HPGVVRMKQKACSFVFWTGIDKDVEKLVRGCENCQ----ESAKM 915 Query: 49971 GGL--LQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIW--VIIDRLTKSAHFLPVRTTYS 49804 + L+ P W +++DF + + W VI+D +K A + + T S Sbjct: 916 PRVAPLRPWPEPQKAWSRVHIDFAGPV-------NGHWFLVIVDAKSKYAE-VKMTKTIS 967 Query: 49803 AEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKS 49624 A V L + E+ HG P ++SD G QFT+N ++ + G + S ++P+++G + Sbjct: 968 ASATVSL-LEEVFATHGYPELLVSDNGTQFTSNQFKLMCQEYGMEHKTSAVYYPRSNGAA 1026 Query: 49623 ERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMA-PYEALYGRKCRS 49456 ER + +L+ L A I L Y N HS++ A P E +GRK R+ Sbjct: 1027 ERFVDSLKRGL-AKITRSGVVTQQALNKFLICYRNTPHSALAGATPAECHFGRKIRT 1082 Score = 47.3 bits (110), Expect(2) = 2e-004 Identities = 37/140 (26%), Positives = 55/140 (38%) Frame = +1 Query: 9163 EDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPR 9342 E+H L +L+ +++ + K F + FLG II G R D +K S Sbjct: 508 EEHEKVLHELLKRIKDYGFRISPEKCNFAQSEITFLGFIIDKRGRRPDPKKTSVIRSMKA 567 Query: 9343 PIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXX 9522 P K + SFL +Y RFV + S + PL K+ + ++ + F EL K Sbjct: 568 PTDQKQLMSFLGAICFYGRFVPKMSELRGPLDKLLKKDADWIWTDVEQKAFEELRKAVAD 627 Query: 9523 XXXXXXXXXXHVFIVYCHAS 9582 IV AS Sbjct: 628 STMLSHFNSSWPIIVAADAS 647 Score = 25.8 bits (55), Expect(2) = 2e-004 Identities = 13/43 (30%), Positives = 25/43 (57%) Frame = +3 Query: 9633 EKNYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL*YVF 9761 EK Y + E +L++++K F++G R + TD++ L +F Sbjct: 678 EKRYSQIEKEALALIYTVKKSHKFVFGRRFKLQTDHRPLLALF 720 >gb|AAB42240.1| (U88169) similar to retrovirus-related POL polyprotein [Caenorhabditis elegans] Length = 1313 Score = 164 bits (412), Expect = 8e-038 Identities = 132/478 (27%), Positives = 232/478 (47%), Gaps = 14/478 (2%) Frame = -2 Query: 51877 SYLKARKMVRKGYIYHLVRVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTI 51698 S+L +R + +V EA L+ V++ ++FP+VF EF Sbjct: 247 SWLNLCPQMRSALAQIVNQVSTSETEASRLE-VMLKNDFPEVFKDGLGLCTKEKA-EFRT 304 Query: 51697 DVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPST-SPWGAPVLFVRKKD-GSL 51524 + + P+F + L+ ++++L L E G I P T + W AP++ ++KK G + Sbjct: 305 EE--NAVPVFKRARPVPYGSLEAVEKELDRLQEMGVIVPITYAKWAAPIVVIKKKGTGKI 362 Query: 51523 QMSIEYK--QLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKT 51350 ++ ++K LN +PLP +D+F +L+G +S+IDL+ +Y +V + E Sbjct: 363 RVCADFKCSGLNAALKDEFHPLPTSEDIFSRLKGT-VYSQIDLKDAYLQVELDEEAQKLA 421 Query: 51349 AFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHAD 51170 T G + + ++FG+ A A F +M+++ V V++DDI++ + S EEH Sbjct: 422 VINTHRGIFKYLRMTFGLKPAPASFQKIMDKMVSGLTG--VAVYLDDIIISASSIEEHEK 479 Query: 51169 HLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPT 50990 LR + ++ KC F + FLG I+ G R D +K E +++ PT Sbjct: 480 ILRELFERIKEYGFRVSAEKCAFAQKQVTFLGFIVDEHGRRPDPKKTEVIRSMKAPTDQK 539 Query: 50989 EVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLN 50810 ++ SFL +Y RFV K + + PL L ++ K+ WT+ + +F LK+ + + L+ Sbjct: 540 QLASFLGAVSFYSRFVPKMSKLRGPLDSLMKRDVKWNWTDIHQEAFNTLKNAVADSTMLS 599 Query: 50809 LPEGPDGYVIYCDTSGVGLGCVLMQ-----HGKVIAYASRQLRKHENNYPTHDLKLEIVV 50645 +I D S G+G VL+ H +A+ +R L E Y + + +V Sbjct: 600 HFNESWPIIIAADASQYGIGGVLLHQTPEGHEVPVAHFARALTDTEKRYSQIEKEAVALV 659 Query: 50644 HALKIWRHYLYGFHVDIYTDHKSLQYIF-KQKELYLRQR----RWLELLKDYDVDILYHL 50480 + +K +++G + TDHK L IF +K+L + + RW L Y+ ++ Y Sbjct: 660 YTVKKAHKFIFGRKFLLQTDHKPLLAIFGPKKDLPVHSQNRLVRWATTLMTYNFELSYVS 719 Query: 50479 GKANVVVDALSR 50444 D LSR Sbjct: 720 TSKIFKADWLSR 731 Score = 85.4 bits (208), Expect = 7e-014 Identities = 64/216 (29%), Positives = 105/216 (47%), Gaps = 6/216 (2%) Frame = -3 Query: 50103 NPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGL--LQEIEIPTWKW 49930 +PG +M R +W G+ DI + V C+NCQ E+ K + L +P W Sbjct: 843 HPGIVQMKQKARAFVFWRGLDSDIEKMVRHCNNCQ----ENSKMPRVVPLNPWPVPETPW 898 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 + I++DF L + V++D TK A R+ SA + L + EI +HG Sbjct: 899 KRIHIDFAGPLNGYY-----LLVVVDAKTKYAEVKLTRSI-SAVTTIDL-LEEIFSIHGY 951 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 P +IISD G Q T++ + + G + S ++P+++G +ER + D L+ I Sbjct: 952 PETIISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFV----DTLKRGIAKI 1007 Query: 49569 KGSWDDHLPLIE---FAYNNHYHSSIQ-MAPYEALYGRKCRS 49456 KG + ++ +Y N HS++ P E +GRK R+ Sbjct: 1008 KGEGSVNQQILNKFLISYRNTPHSALNGSTPAECHFGRKIRT 1049 Score = 51.5 bits (121), Expect = 0.001 Identities = 37/129 (28%), Positives = 54/129 (41%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA+F +M ++ + S E+H LR + + ++ V K Sbjct: 442 APASFQKIMDKMVSGLTGVAVYLDDIIISASSI--EEHEKILRELFERIKEYGFRVSAEK 499 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F K V FLG I+ G R D +K E S P K + SFL +Y RFV + S Sbjct: 500 CAFAQKQVTFLGFIVDEHGRRPDPKKTEVIRSMKAPTDQKQLASFLGAVSFYSRFVPKMS 559 Query: 9418 SISSPLTKI 9444 + PL + Sbjct: 560 KLRGPLDSL 568 >dbj|BAA84458.1| (AB030283) GAG-POL precursor [Oryza sativa] Length = 1032 Score = 164 bits (410), Expect = 1e-037 Identities = 115/405 (28%), Positives = 189/405 (46%), Gaps = 11/405 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSP-WGAPVLFVRKK 51536 IE ++ V D +PI R A +KE+L LL GFI+ P W A + VRKK Sbjct: 9 IEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKK 68 Query: 51535 DGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIP 51356 G +M ++Y LNK K+ + LPRID + D G + S +D S YH++R++E+D Sbjct: 69 TGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCL 128 Query: 51355 KTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEH 51176 KT+F T +G Y + + FG+ NA A + ++ R F + V +VDD++V ++ +++ Sbjct: 129 KTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDL 188 Query: 51175 ADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT 50996 L ++ ++ KC F + S LG ++ GI+ + +K+ A+ P+T Sbjct: 189 ISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPST 248 Query: 50995 PTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPF 50816 +V+ RFV + P +L +K F W +++F K LT P Sbjct: 249 QKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPV 308 Query: 50815 LNLPEGPDGYVIYCDTSGVGLGCVLM----QHGKV------IAYASRQLRKHENNYPTHD 50666 L P + ++Y + + VL+ + G V I + S L + YP Sbjct: 309 LASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQ 368 Query: 50665 LKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDV 50498 L ++ + HY G V + T L I +E R +W L D+ Sbjct: 369 KLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDI 423 Score = 73.4 bits (177), Expect = 3e-010 Identities = 56/231 (24%), Positives = 102/231 (43%), Gaps = 5/231 (2%) Frame = -3 Query: 50145 RQVMGEEHSA-CYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG 49969 RQ++ + HS C + T + R ++W D + V C CQ + Sbjct: 678 RQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPA 737 Query: 49968 GLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYV 49789 LQ I + +W + + +D + + ++V ID+ +K PV T + D Sbjct: 738 QELQTIPL-SWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITA--DNA 794 Query: 49788 RLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQ 49609 R + IV GVP II+D G QFT ++ F + G ++ ++ HP ++G+ ER Sbjct: 795 RDFFINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 854 Query: 49608 TLEDMLRASIID----FKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 + ++A + D + G W LP + ++ + +P+ +YG + P Sbjct: 855 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLP 910 Score = 47.3 bits (110), Expect(2) = 4e-006 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Frame = +2 Query: 8756 FI*QNISP-WGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXX 8932 FI + + P W A + +RKK R+C+DY N K + L RI Sbjct: 49 FIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELL 108 Query: 8933 XNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 ++ SG H+++++E D KT+FI +G Y ++ + Sbjct: 109 SFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTM 144 Score = 31.7 bits (70), Expect(2) = 4e-006 Identities = 27/117 (23%), Positives = 44/117 (37%) Frame = +1 Query: 9160 KEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFP 9339 K+D SDL ++R + K F + LG ++S GI+ + EK+ + + Sbjct: 185 KDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMK 244 Query: 9340 RPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 P K++ RFV R P K+ FQ + F + K Sbjct: 245 PPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKK 301 >emb|CAA23460.1| (V00141) reading frame (V) [Cauliflower mosaic virus] Length = 679 Score = 164 bits (410), Expect = 1e-037 Identities = 122/414 (29%), Positives = 201/414 (48%), Gaps = 19/414 (4%) Frame = -2 Query: 51682 TQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVR----KKDGSLQMS 51515 ++ I + P + +P + +E +Q+++LL+ I+PS SP AP V K+ G +M Sbjct: 244 SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMV 303 Query: 51514 IEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTR 51335 + YK +NK TV + Y LP D+L ++G K FS D +S + +V + + P TAF Sbjct: 304 VNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 363 Query: 51334 YGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTV 51155 GHY++ V+ FG+ A ++F M+ F+ F F V+VDDILV+S +EE+H H+ + Sbjct: 364 QGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMI 422 Query: 51154 LRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT---PTEV 50984 L+ + K + + + FLG I + +E + + P T ++ Sbjct: 423 LQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKF--PDTLEDKKQL 480 Query: 50983 RSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLP 50804 + FL + Y ++ K A I PL ++ + WT +K L P L+ P Sbjct: 481 QRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHP 540 Query: 50803 EGPDGYVIYCDTS----GVGLGCVLMQHGK----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + +I D S G L + + G + YAS + E NY ++D + V Sbjct: 541 LPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAV 600 Query: 50647 VHALKIWRHYLYGFHVDIYTDHKSLQYI----FKQKELYLRQRRWLELLKDYDVDILYHL 50480 ++ +K + YL H I TD+ + +K R RW L Y D+ + Sbjct: 601 INTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIK 660 Query: 50479 GKANVVVDALSRK 50441 G N D LSR+ Sbjct: 661 GTDNHFADFLSRE 673 >emb|CAA55974.1| (X79465) ORF V [Cauliflower mosaic virus] Length = 680 Score = 163 bits (409), Expect = 2e-037 Identities = 121/414 (29%), Positives = 201/414 (48%), Gaps = 19/414 (4%) Frame = -2 Query: 51682 TQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVR----KKDGSLQMS 51515 ++ I + P + +P + +E +Q+++LL+ I+PS SP AP V K+ G +M Sbjct: 245 SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMV 304 Query: 51514 IEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTR 51335 + YK +NK T+ + Y LP D+L ++G K FS D +S + +V + + P TAF Sbjct: 305 VNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 364 Query: 51334 YGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTV 51155 GHY++ V+ FG+ A ++F M+ F+ F F V+VDDILV+S +EE+H H+ + Sbjct: 365 QGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMI 423 Query: 51154 LRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT---PTEV 50984 L+ + K + + + FLG I + +E + + P T ++ Sbjct: 424 LQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKF--PDTLEDKKQL 481 Query: 50983 RSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLP 50804 + FL + Y ++ K A I PL ++ + WT +K L P L+ P Sbjct: 482 QRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHP 541 Query: 50803 EGPDGYVIYCDTS----GVGLGCVLMQHGK----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + +I D S G L + + G + YAS + E NY ++D + V Sbjct: 542 LPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAV 601 Query: 50647 VHALKIWRHYLYGFHVDIYTDHKSLQYI----FKQKELYLRQRRWLELLKDYDVDILYHL 50480 ++ +K + YL H I TD+ + +K R RW L Y D+ + Sbjct: 602 INTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIK 661 Query: 50479 GKANVVVDALSRK 50441 G N D LSR+ Sbjct: 662 GTDNHFADFLSRE 674 >gb|AAA62375.1| (M90542) reverse transcriptase [Cauliflower mosaic virus] Length = 679 Score = 163 bits (409), Expect = 2e-037 Identities = 121/414 (29%), Positives = 201/414 (48%), Gaps = 19/414 (4%) Frame = -2 Query: 51682 TQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVR----KKDGSLQMS 51515 ++ I + P + +P + +E +Q+++LL+ I+PS SP AP V K+ G +M Sbjct: 244 SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMV 303 Query: 51514 IEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTR 51335 + YK +NK T+ + Y LP D+L ++G K FS D +S + +V + + P TAF Sbjct: 304 VNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 363 Query: 51334 YGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTV 51155 GHY++ V+ FG+ A ++F M+ F+ F F V+VDDILV+S +EE+H H+ + Sbjct: 364 QGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMI 422 Query: 51154 LRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT---PTEV 50984 L+ + K + + + FLG I + +E + + P T ++ Sbjct: 423 LQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKF--PDTLEDKKQL 480 Query: 50983 RSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLP 50804 + FL + Y ++ K A I PL ++ + WT +K L P L+ P Sbjct: 481 QRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHP 540 Query: 50803 EGPDGYVIYCDTS----GVGLGCVLMQHGK----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + +I D S G L + + G + YAS + E NY ++D + V Sbjct: 541 LPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAV 600 Query: 50647 VHALKIWRHYLYGFHVDIYTDHKSLQYI----FKQKELYLRQRRWLELLKDYDVDILYHL 50480 ++ +K + YL H I TD+ + +K R RW L Y D+ + Sbjct: 601 INTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIK 660 Query: 50479 GKANVVVDALSRK 50441 G N D LSR+ Sbjct: 661 GTDNHFADFLSRE 673 >gb|AAD37341.1|AF140604_5 (AF140604) reverse transcriptase [Cauliflower mosaic virus] Length = 674 Score = 163 bits (408), Expect = 2e-037 Identities = 122/414 (29%), Positives = 200/414 (47%), Gaps = 19/414 (4%) Frame = -2 Query: 51682 TQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVR----KKDGSLQMS 51515 ++ I + P + +P + +E +Q+++LL+ I+PS SP AP V K+ G +M Sbjct: 239 SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMV 298 Query: 51514 IEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTR 51335 + YK +NK TV + Y LP D+L ++G K FS D +S + +V + P TAF Sbjct: 299 VNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLPDQESRPLTAFTCP 358 Query: 51334 YGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTV 51155 GHY++ V+ FG+ A ++F M+ F+ F F V+VDDILV+S +EE+H H+ + Sbjct: 359 QGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNTEEDHLLHVAMI 417 Query: 51154 LRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT---PTEV 50984 L+ + K + + + FLG I + +E + + P T ++ Sbjct: 418 LQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKF--PDTLEDKKQL 475 Query: 50983 RSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLP 50804 + FL + Y ++ K A I PL ++ + WT +K L P L+ P Sbjct: 476 QRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHRP 535 Query: 50803 EGPDGYVIYCDTS----GVGLGCVLMQHGK----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + +I D S G L + + G + YAS + E NY ++D + V Sbjct: 536 LPEEKLIIETDASDDYWGGMLKAIQINEGTNTELICRYASGSFKAAEKNYHSNDKETLAV 595 Query: 50647 VHALKIWRHYLYGFHVDIYTDHKSLQYI----FKQKELYLRQRRWLELLKDYDVDILYHL 50480 ++ +K + YL H I TD+ + +K R RW L Y D+ + Sbjct: 596 INTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIK 655 Query: 50479 GKANVVVDALSRK 50441 G N D LSR+ Sbjct: 656 GTDNRFADFLSRE 668 >emb|CAA12930.1| (AJ228325) reverse transcriptase [Ginkgo biloba] Length = 138 Score = 162 bits (407), Expect = 3e-037 Identities = 71/138 (51%), Positives = 103/138 (74%) Frame = -2 Query: 51520 MSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFW 51341 + ++Y++LNK+TVK++YP+P ID+L D+L GA FSK+DLRS YH++R++E D PK AF Sbjct: 1 LCVDYRELNKITVKDKYPIPIIDELLDELHGACFFSKLDLRSGYHQIRLKEVDTPKIAFR 60 Query: 51340 TRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLR 51161 T GHY+F V+ FG+TNA + F LMN++F +L F++VF DDIL+YS++ +H HL Sbjct: 61 THDGHYEFLVMPFGLTNAPSTFQSLMNQIFCLYLQRFILVFFDDILIYSKTWSDHLAHLD 120 Query: 51160 TVLRVLQHQKLYAMFSKC 51107 L++L +LYA FSKC Sbjct: 121 QALQLLSDNQLYAKFSKC 138 Score = 57.4 bits (136), Expect(2) = 1e-009 Identities = 28/76 (36%), Positives = 41/76 (53%) Frame = +2 Query: 8828 ICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFI 9007 +C+DY + N +T K KYP+ I ++LRSG H+++++E D PK F Sbjct: 1 LCVDYRELNKITVKDKYPIPIIDELLDELHGACFFSKLDLRSGYHQIRLKEVDTPKIAFR 60 Query: 9008 KRYGHYLFLVIFIVLT 9055 GHY FLV+ LT Sbjct: 61 THDGHYEFLVMPFGLT 76 Score = 34.0 bits (76), Expect(2) = 1e-009 Identities = 20/60 (33%), Positives = 28/60 (46%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP+ F LM+++F +L F YS DH + L LQ L + + KFSK Sbjct: 78 APSTFQSLMNQIFCLYLQRFILVFFDDILIYSKTWSDHLAHLDQALQLLSDNQLYAKFSK 137 >gb|AAA21736.1| (M90543) reverse transcriptase [Cauliflower mosaic virus] Length = 680 Score = 162 bits (406), Expect = 4e-037 Identities = 122/411 (29%), Positives = 199/411 (47%), Gaps = 19/411 (4%) Frame = -2 Query: 51673 IFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVR----KKDGSLQMSIEY 51506 I + P + +P + +E +Q+++LL+ I+PS SP AP V K+ G +M + Y Sbjct: 248 IKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNY 307 Query: 51505 KQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGH 51326 K +NK TV + Y LP D+L ++G K FS D +S + +V + + P TAF GH Sbjct: 308 KAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGH 367 Query: 51325 YDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 Y++ V+ FG+ A ++F M+ F+ F F V+VDDILV+S +EE+H H+ +L+ Sbjct: 368 YEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQK 426 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT---PTEVRSF 50975 + K + + + FLG I + +E + + P T +++ F Sbjct: 427 CNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKF--PDTLEDKKQLQRF 484 Query: 50974 LELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGP 50795 L + Y ++ K A I PL ++ + WT +K L P L+ P Sbjct: 485 LGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPE 544 Query: 50794 DGYVIYCDTS----GVGLGCVLMQHG----KVIAYASRQLRKHENNYPTHDLKLEIVVHA 50639 + +I D S G L + + G + YAS + E NY ++D + V++ Sbjct: 545 EKLIIETDASDDYWGGMLKAIKINEGINTELICRYASGSFKAAERNYHSNDKETLAVINT 604 Query: 50638 LKIWRHYLYGFHVDIYTDHKSLQYI----FKQKELYLRQRRWLELLKDYDVDILYHLGKA 50471 +K + YL H TD+ + +K R RW L Y D+ + G Sbjct: 605 IKKFSIYLTPAHFLTRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLNHYSFDVEHIKGTD 664 Query: 50470 NVVVDALSRK 50441 N VD LSR+ Sbjct: 665 NHFVDFLSRE 674 >gb|AAD22283.1|AC006920_7 (AC006920) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1787 Score = 162 bits (405), Expect = 5e-037 Identities = 117/386 (30%), Positives = 186/386 (47%), Gaps = 5/386 (1%) Frame = -2 Query: 51655 RMAPAELKELKEQLRDLLEKGFIRPSTSP-WGAPVLFVRKKDGSLQMSIEYKQLNKVTVK 51479 ++ P K++ E+++ LL+ G I P W + V+KK+G ++ I++ LNK K Sbjct: 789 KLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPK 848 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 + +PLP ID L + G + S +D S Y+++ + + D KT F T G Y ++V+ FG Sbjct: 849 DSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQGTYCYKVMPFG 908 Query: 51298 MTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAM 51119 + NA A + L+N++F LD + V++DD+LV S EEH HLR +VL + Sbjct: 909 LKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQVLNRYNMKLN 968 Query: 51118 FSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVE 50939 SKC F +TS FLG+++ GI + ++I A+ P EV+ + RF+ Sbjct: 969 PSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQRLIGRIAALNRFIS 1028 Query: 50938 KFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYV-IYCDTSG 50762 + P +L + +F W CE EG Y+ I TS Sbjct: 1029 RSTDKCLPFYQLLRANKRFEWDEKCE-------------------EGETLYLYIAVSTSA 1069 Query: 50761 VGLGCVLMQHGK--VIAYASRQLRKHENNYPT-HDLKLEIVVHALKIWRHYLYGFHVDIY 50591 V V G+ I Y S+ L E YPT L +V+ A K+ R Y + V++ Sbjct: 1070 VSGVLVREDRGEQHPIFYVSKTLDGAELRYPTLEKLAFAVVISARKL-RPYFKSYTVEVL 1128 Query: 50590 TDHKSLQYIFKQKELYLRQRRWLELLKDYDV 50498 T ++ L+ I R +W L +YD+ Sbjct: 1129 T-NQPLRTILHSPSQSGRLAKWAVELSEYDI 1158 Score = 84.3 bits (205), Expect(2) = 2e-014 Identities = 73/261 (27%), Positives = 123/261 (46%), Gaps = 14/261 (5%) Frame = -3 Query: 50145 RQVMGEEHSACYSINPGSTKMYHDLRCL-YWWDGMKKDIAEFVAQCSNCQ*-VKIEHQKS 49972 +QVM E H + G + +R +W M D +FVA+C CQ H S Sbjct: 1432 QQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFIHIPS 1491 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDY 49792 L + +P + + MD I P ++ K I V+ D TK + AE Y Sbjct: 1492 EVL--QTAMPPYPFMRWAMDIIRPFPASRQK-KYILVMTDYFTK---------WFEAESY 1539 Query: 49791 VRLYVREIVRL--------HGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQT 49636 R+ +E+ HG+P I++D G QFT+ + F +++ ST +PQ Sbjct: 1540 ARIQSKEVQNFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQC 1599 Query: 49635 DGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRS 49456 +G++E T +T+ D L+ + + KG+W D L + ++Y S P+ YG + + Sbjct: 1600 NGQAEATNKTILDGLKKRLDEKKGAWADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALA 1659 Query: 49455 P--IGWFDVGETKLIGPDMI--QQVVDKVKLIQER 49363 P G V + LI + Q ++D + ++E+ Sbjct: 1660 PCEAGLPTVRRSMLINDPTLNDQMLLDNLDTLEEQ 1694 Score = 41.0 bits (94), Expect(2) = 2e-005 Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 7/148 (4%) Frame = +1 Query: 9043 HCFDIAP-------AAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQT 9201 +C+ + P A + L++++F LD S E+H + LR Q Sbjct: 900 YCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCFQV 959 Query: 9202 LRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLAL 9381 L + SK F + FLG++++ GI + ++I + P P + + + Sbjct: 960 LNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREVQRLIGR 1019 Query: 9382 AYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE 9486 RF+ R + P ++ +F+ E CE Sbjct: 1020 IAALNRFISRSTDKCLPFYQLLRANKRFEWDEKCE 1054 Score = 35.6 bits (80), Expect(2) = 2e-005 Identities = 22/87 (25%), Positives = 37/87 (42%) Frame = +2 Query: 8780 WGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGC 8959 W + ++KK R+CID+ N K +PL I ++ SG Sbjct: 819 WLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGY 878 Query: 8960 HKMKVRECDVPKTNFIKRYGHYLFLVI 9040 +++ + + D KT FI G Y + V+ Sbjct: 879 NQILMHQNDREKTVFITDQGTYCYKVM 905 Score = 23.1 bits (48), Expect(2) = 2e-014 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -1 Query: 49304 FQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYEL 49164 F GD V KV + + D GKL + GPY I + + YEL Sbjct: 1722 FAEGDLVLRKV--FENTVEQDA-GKLGAHWEGPYLISKVVKPGVYEL 1765 >dbj|BAB01917.1| (AP001307) contains similarity to amine oxidase~gene_id:MMM17.10 [Arabidopsis thaliana] Length = 746 Score = 81.5 bits (198), Expect = 1e-012 Identities = 67/210 (31%), Positives = 97/210 (45%), Gaps = 9/210 (4%) Frame = +3 Query: 59229 IGFFVQK*LYKLHKMRDLCPLYHVDGKPVDNYLEKKVEIV*NELLEKANRVK---QESTH 59399 +G ++ LHK+RD CPLY+ +G VD + VE N+LL+K V+ + + Sbjct: 227 LGVLARQLSIPLHKVRDNCPLYNSEGVLVDKVADSNVEFGFNKLLDKVTEVREMMEGAAK 286 Query: 59400 VVSLEEALETF*KEFGVAMNVKEMNFXXXXXXXXXXXXAGLIXXXXXXXXXXXXPYDNGR 59579 +SL E LET +GVA + +E AG + PY+ G Sbjct: 287 KISLGEVLETLRVLYGVAKDSEERKLFDWHLANLEYANAGCLSNLSAAYWDQDDPYEMGG 346 Query: 59580 G*LLLARWKWRVSSCPN*KCAFYF*KNYTCH*L**K*FEGD*WRPII*G----RCD--IS 59741 LA WR+ + + K+ GD +I G + D + Sbjct: 347 DHCFLAGGNWRLINALAEGLPIIYGKSVDTI------KYGDGGVEVISGSQIFQADMILC 400 Query: 59742 TFPLRVLKNGAIRFIPVFPQQKLDTIKKLGIGLLNKVAM 59858 T PL VLK +I+F P P++K I +LG GLLNKVAM Sbjct: 401 TVPLGVLKKRSIKFEPELPRRKQAAIDRLGFGLLNKVAM 439 Score = 66.7 bits (160), Expect(4) = 1e-036 Identities = 62/166 (37%), Positives = 93/166 (55%), Gaps = 28/166 (16%) Frame = -2 Query: 45025 KKMVGGNKVEVIDLGRSVLTGKLGTHLVCLRRRLSYTLHKV*DHRPLYRTN*NHVD*YFD 44846 +KM G ++ ++LG SV+TG L L R+LS LHKV D+ PLY + VD D Sbjct: 201 QKMGGKDRFAAVELGGSVITGLHANPLGVLARQLSIPLHKVRDNCPLYNSEGVLVDKVAD 260 Query: 44845 KTVMVAYS*LLEKASKVRQ-------ELSL------------VVSLREKISLFSFHLKIL 44723 V ++ LL+K ++VR+ ++SL V E+ LF +HL L Sbjct: 261 SNVEFGFNKLLDKVTEVREMMEGAAKKISLGEVLETLRVLYGVAKDSEERKLFDWHLANL 320 Query: 44722 EYANAG----LTHAGTNMSL*YGRGS----LLIAQWKR-NISSCAMWLLFLKNV*AICYS 44570 EYANAG L+ A + Y G L W+ N + + +++ K+V I Y Sbjct: 321 EYANAGCLSNLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALAEGLPIIYGKSVDTIKYG 380 Query: 44569 RDSVKVIIGCQLLE 44528 V+VI G Q+ + Sbjct: 381 DGGVEVISGSQIFQ 394 Score = 65.2 bits (156), Expect(4) = 1e-036 Identities = 38/99 (38%), Positives = 52/99 (52%) Frame = -1 Query: 45311 NMSISVMKDCFGDVIPKWCSGLLDYAYNYFLLYEYINFTVELATKSRIPTKPSVSRVIFI 45132 N+ I ++KD + + L+ AY++ L YINF V IP + + VI + Sbjct: 106 NVGIWLLKDQIRETVSSDFEHLISAAYDFLLFNGYINFGVSPLFAPYIPEEGTEGSVIVV 165 Query: 45131 GTSLVGLVAARQLMLFEFEVIVLERLKSASGRFYT*KDG 45015 G L GL AARQL+ F F+V+VLE GR YT K G Sbjct: 166 GAGLAGLAAARQLLSFGFKVLVLEGRSRPGGRVYTQKMG 204 Score = 51.5 bits (121), Expect(4) = 1e-036 Identities = 24/53 (45%), Positives = 34/53 (63%) Frame = -3 Query: 45480 LNKMPTSETFVALMDGFPSHSLKDEEIEVGLVSVIGGIEQCNYILIRNHIIKK 45322 L K +E +AL GFP L +EEI G+V +GG EQ +YI++RNHI+ + Sbjct: 50 LEKETETEALIALSVGFPIDELLEEEIRAGVVRELGGKEQNDYIVVRNHIVAR 102 Score = 48.8 bits (114), Expect = 0.007 Identities = 22/57 (38%), Positives = 34/57 (59%) Frame = +1 Query: 59563 PMIMEGDDYFLPGGNGGLVHALTKNVPSIFEKIIHATSYNRNSLKVINGGQLFEGDV 59733 P M GD FL GGN L++AL + +P I+ K + Y ++VI+G Q+F+ D+ Sbjct: 341 PYEMGGDHCFLAGGNWRLINALAEGLPIIYGKSVDTIKYGDGGVEVISGSQIFQADM 397 Score = 39.5 bits (90), Expect(4) = 1e-036 Identities = 24/47 (51%), Positives = 28/47 (59%) Frame = -3 Query: 44487 KCSI*FIP*FPQQKLDT*N*ILGFGLLN*VTMLFLYVFWNSNIDIFG 44347 K SI F P P++K + LGFGLLN V MLF VFW +D FG Sbjct: 409 KRSIKFEPELPRRKQAAID-RLGFGLLNKVAMLFPSVFWGDELDTFG 454 >gb|AAC69378.1| (AC005398) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 945 Score = 102 bits (253), Expect(2) = 1e-023 Identities = 66/211 (31%), Positives = 101/211 (47%), Gaps = 2/211 (0%) Frame = -2 Query: 51859 KMVRKGY-IYHLVRVHDIN-AEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLL 51686 K R G+ I+ + H+ + P + +++EF +F + I + Sbjct: 453 KKARMGHTIFAITMAHNSSDPNTPDGEIKKLIEEFAGLFETPTQLPSERPIVH-RIALKK 511 Query: 51685 DTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEY 51506 T P+ + PYR A + E+ G IRPS+SP+ +PVL Sbjct: 512 GTDPVNVRPYRYAFYQKDEMSRA-------GIIRPSSSPFLSPVLL-------------- 550 Query: 51505 KQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGH 51326 R+P+P +DD+ D+L GA F+K+DL + Y +VR+ DIPK AF T GH Sbjct: 551 ---------ERFPIPTVDDMLDELNGAVYFTKLDLTAGYQQVRMHSPDIPKIAFQTHNGH 601 Query: 51325 YDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFV 51227 Y++ V+ FG+ NA + F LMN +F P L V Sbjct: 602 YEYLVMPFGLCNAPSTFQALMNEIFWPLLSRSV 634 Score = 96.7 bits (237), Expect(2) = 2e-036 Identities = 49/139 (35%), Positives = 83/139 (59%) Frame = -3 Query: 49782 YVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTL 49603 +V +V+LHG+P SI+SD F + FW+ F K T++ +ST +HPQTDG++E + + Sbjct: 638 FVSHVVKLHGIPRSIVSDCDPIFMSLFWQEFWKLSRTKLWMSTAYHPQTDGQTEVVNRCI 697 Query: 49602 EDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVGETK 49423 E LR + W +P E+ YN +H+S M P++ALYGR SPI +++G Sbjct: 698 EQFLRCFVHYHPKQWSSFIPWAEYWYNTTFHASTGMTPFQALYGRP-PSPIPAYELG--S 754 Query: 49422 LIGPDMIQQVVDKVKLIQE 49366 ++ ++ +Q+ + +L+ E Sbjct: 755 VVCGELNEQMAARDELLAE 773 Score = 85.0 bits (207), Expect(2) = 2e-036 Identities = 52/149 (34%), Positives = 83/149 (54%), Gaps = 5/149 (3%) Frame = -1 Query: 49340 RSHADNRR*DLEFQIGDWVFLKVSPMKGVMRLDRKG-KLSPRYIGPYQIVRWIGKVAYEL 49164 + AD+R D+ FQ+GDWV L++ P + R KLS R+ GP+Q+ G+VAY L Sbjct: 786 KQQADSRLRDVSFQVGDWVLLRIQPYRQKTLFRRSSQKLSHRFYGPFQVASKHGEVAYRL 845 Query: 49163 DLPSDLEVVHPVFHVSMLRKCIG----DPSRVFPIDDVQVIEEFSYEEKPIAMLDRQVRR 48996 LP +HPVFHVS+L+ +G D ++ P+ + + +P A+L+ + R Sbjct: 846 TLPEGTR-IHPVFHVSLLKPWVGDGEPDMGQLPPLRN-----NGELKLQPTAVLEVRWRS 899 Query: 48995 LRTKDVASVKVLWQNNNREEMTREVEDEMKNKYP 48894 K VA + V W+ + E+ T E D++ +P Sbjct: 900 QDKKRVADLLVQWEGLHIEDATWEEYDQLAASFP 933 Score = 74.5 bits (180), Expect(3) = 2e-018 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 2/182 (1%) Frame = +2 Query: 10514 LAEDYAKLYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILK-EVE 10690 L+ A ++ V +LHG I+S+ F + W+ F K +KL + + + + Sbjct: 630 LSRSVAAKFVSHVVKLHGIPRSIVSDCDPIFMSLFWQEFWKLSRTKLWMSTAYHPQTDGQ 689 Query: 10691 KQCTIKTLEYMLRACVIDFKVNWDDNMPLIEYSYNNSYHSSIQMAPYEALYGRRGRYHIR 10870 + + +E LR V W +P EY YN ++H+S M P++ALYGR I Sbjct: 690 TEVVNRCIEQFLRCFVHYHPKQWSSFIPWAEYWYNTTFHASTGMTPFQALYGRPPS-PIP 748 Query: 10871 LFKVGESGLIGLDVVHQIMDKLKV-IQERMMTTQSCKKFNTDIRRRPLECEVDDWVYLKV 11047 +++G L+ D+L +++ ++T +C K D R R + +V DWV L++ Sbjct: 749 AYELGSVVCGELNEQMAARDELLAELKQHLVTANNCMKQQADSRLRDVSFQVGDWVLLRI 808 Query: 11048 *P*R 11059 P R Sbjct: 809 QPYR 812 Score = 47.3 bits (110), Expect = 0.021 Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 7/163 (4%) Frame = +3 Query: 42468 VQDSLRKATKRMKNNADQH*HTLEFQVGNNVLIKLTPHNWKKI----SSKTIHRGRILK* 42635 ++ L A MK AD + FQVG+ VL+++ P+ K + S K HR Sbjct: 774 LKQHLVTANNCMKQQADSRLRDVSFQVGDWVLLRIQPYRQKTLFRRSSQKLSHRFY---- 829 Query: 42636 DGPFDVIERAGEVSCMLKLSEILKISPYISCEFS*TFS*GC*GSKNISCQECSLVVQTQF 42815 GPF V + GEV+ L L E +I P + G ++ Q L + Sbjct: 830 -GPFQVASKHGEVAYRLTLPEGTRIHPVFHVSLLKPWVGD--GEPDMG-QLPPLRNNGEL 885 Query: 42816 EEQIEKILDQRNLGQTKK---NFLVQ*KGKSVSDAAWEKKPPYGSSKKRF 42956 + Q +L+ R Q KK + LVQ +G + DA WE+ +S F Sbjct: 886 KLQPTAVLEVRWRSQDKKRVADLLVQWEGLHIEDATWEEYDQLAASFPEF 935 Score = 39.1 bits (89), Expect(3) = 2e-018 Identities = 19/47 (40%), Positives = 28/47 (59%) Frame = +1 Query: 11086 KLIPRFIGSYKIYKRVGNQVYELELPQELAAVHVVFHISMLMKFLGD 11226 KL RF G +++ + G Y L LP E +H VFH+S+L ++GD Sbjct: 823 KLSHRFYGPFQVASKHGEVAYRLTLP-EGTRIHPVFHVSLLKPWVGD 868 Score = 35.6 bits (80), Expect(2) = 1e-023 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 13/120 (10%) Frame = -3 Query: 52227 ALIDPGSTL*FLSAFIASRIGIESELIEPFEVATPLGDSVIATRVYKNCSVVIYSRRTIA 52048 ALI+ GST F+ + +++ +PF V G ++ Y+ VV+ Sbjct: 331 ALINSGSTHNFIGEKAVRGMNLKATTTKPFTVRVVNGMPLVCRSRYEAIPVVMGGVVFPV 390 Query: 52047 DLIELTIIEFDIIMGMDWLAACYANV-DYRGKIVRFQFLGEPI------------IEWKG 51907 L L ++ D+ MG+ WL+ + +++ + ++F + G+ + +E K Sbjct: 391 TLYALPLMGLDLAMGVQWLSTLGPTLCNWKEQTLQFHWAGDEVRLMGIKPTGLRGVEHK- 449 Query: 51906 STISRKVSSFHTL 51868 TI++K HT+ Sbjct: 450 -TITKKARMGHTI 461 Score = 27.4 bits (59), Expect(3) = 2e-018 Identities = 11/50 (22%), Positives = 26/50 (52%) Frame = +3 Query: 11298 IFDLQVRKLRTKKVASVKVLWRNQFVEEATYEAEEDMRKRYSHLFESIEN 11447 + +++ R K+VA + V W +E+AT+E + + + ++E+ Sbjct: 892 VLEVRWRSQDKKRVADLLVQWEGLHIEDATWEEYDQLAASFPEFVLNLED 941 >emb|CAA39967.1| (X56645) ORF 2 [Drosophila virilis] Length = 1063 Score = 159 bits (397), Expect = 5e-036 Identities = 123/416 (29%), Positives = 200/416 (47%), Gaps = 7/416 (1%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD 51533 ++ I ++ +P+ ++PA+ + + ++ +L+ G I S SPW V + Sbjct: 301 LQHRIQLIEGAEPVKDRLNPLSPAKQEIVWAEVDKMLKLGIIEESDSPWSNRTTVVMRP- 359 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G + ++ ++LN VTVK+ YPLP I+ + + L S E Sbjct: 360 GKNRFCLDARKLNSVTVKDAYPLPCIEGILSRSTRLILSLASTLSSRSGNRDGGEEQGVY 419 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 + TR Y FR + FG+ NA F + ++V L V V++DD+L+ S H Sbjct: 420 GVYCTRRPLYQFRHMPFGLCNAAQHF-EAHDKVIPANLRSNVFVYLDDLLIISADFPTHL 478 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHI-IGADGIRVDTQKIEAVKTWTRPTT 50996 +L V L++ L +K +F +L +LG I + R+D ++EA++ P T Sbjct: 479 KYLELVAECLRNANLTIGMAKSKFLFRNLNYLGFIQLRRRTWRMDPGRVEAIRNIPNPRT 538 Query: 50995 PTEVRSFLELA*YYRRFVEKFALISAPLI-RLTQKAAKF*WTNACERSF*LLKDKLTIAP 50819 E+RSFL A +YRRF++ FA IS PL L ++ +F ++ + LK LT AP Sbjct: 539 VKELRSFLGTAGWYRRFIKNFAEISVPLTDALKKRTGRFVLSDEAIEAIESLKLALTTAP 598 Query: 50818 FLNLPEGPDGYVIYCDTSGVGLGCVLM-----QHGKVIAYASRQLRKHENNYPTHDLKLE 50654 L + + I CD S G+G VL Q + IA+ S +L KH+ NY + + Sbjct: 599 VLVHADFRRPFFIQCDASHYGVGAVLFQLDDEQQERPIAFFSAKLNKHQINYSVTEKECL 658 Query: 50653 IVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGK 50474 A+ +R Y+ + TDH SLQ++ K+L R RW L+ + + Y G Sbjct: 659 AAKLAIHRFRPYVEMMPFTVITDHASLQWLMSLKDLSGRLARWSLELQAFPFSMQYRKGA 718 Query: 50473 ANV 50465 NV Sbjct: 719 DNV 721 Score = 79.2 bits (192), Expect = 5e-012 Identities = 54/201 (26%), Positives = 95/201 (46%), Gaps = 1/201 (0%) Frame = -3 Query: 50109 SINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG-GLLQEIEIPTWK 49933 S + G K H L Y+W M + ++V +C C+ K ++ + G+ +E+ Sbjct: 818 SAHGGMRKTLHALARQYYWPNMAIQVRDYVRKCDTCKETKAQNYRMQVGIGEEVRTDR-P 876 Query: 49932 WEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHG 49753 ++ + +DF+ PR++ I+V++D +K FL +A D V V E+ G Sbjct: 877 FQKLYIDFLGKYPRSKRGHAWIFVVVDHFSKFT-FLKAMREATAADVVNFLVHEVFFKFG 935 Query: 49752 VPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIID 49573 VP I SD G QF + + + + G + + PQ++ +ER +T+ +R + Sbjct: 936 VPEVIHSDNGRQFVSKSFDAMVQAFGITHLRTPVYSPQSNA-AERVNRTVLSAIRTYLGQ 994 Query: 49572 FKGSWDDHLPLIEFAYNNHYHS 49507 WD +LP +E A N HS Sbjct: 995 DHREWDAYLPEVEVAIRNAVHS 1016 Score = 52.7 bits (124), Expect = 5e-004 Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Frame = +1 Query: 9169 HASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHI-ISGEGIRVDKEKIESY*SFPRP 9345 H L +V + LRN + +K +F + + +LG I + R+D ++E+ + P P Sbjct: 477 HLKYLELVAECLRNANLTIGMAKSKFLFRNLNYLGFIQLRRRTWRMDPGRVEAIRNIPNP 536 Query: 9346 IFPKNI*SFLALAYYYRRFVDRFSSISSPLT 9438 K + SFL A +YRRF+ F+ IS PLT Sbjct: 537 RTVKELRSFLGTAGWYRRFIKNFAEISVPLT 567 Score = 40.6 bits (93), Expect = 2.1 Identities = 42/211 (19%), Positives = 87/211 (40%), Gaps = 1/211 (0%) Frame = +2 Query: 10178 LIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKFVAMFSNYQQVKVEHQRLG-G 10354 LI + + T S G K L Y + + +V ++ K ++ R+ G Sbjct: 807 LIQQATRRTRRSAHGGMRKTLHALARQYYWPNMAIQVRDYVRKCDTCKETKAQNYRMQVG 866 Query: 10355 LAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAK 10534 + + + ++ + +DF+ + S+R H IFV+VD +K + FL+ A D Sbjct: 867 IGEEVRTD-RPFQKLYIDFLGKYPRSKRGHAWIFVVVDHFSKFT-FLKAMREATAADVVN 924 Query: 10535 LYIQKVERLHGFLVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILKEVEKQCTIKTL 10714 + +V G I S+ F ++ + + ++ G ++ + + +T+ Sbjct: 925 FLVHEVFFKFGVPEVIHSDNGRQFVSKSFDAMVQAFGITHLRTPVYSPQSNAAERVNRTV 984 Query: 10715 EYMLRACVIDFKVNWDDNMPLIEYSYNNSYHS 10810 +R + WD +P +E + N+ HS Sbjct: 985 LSAIRTYLGQDHREWDAYLPEVEVAIRNAVHS 1016 >gb|AAA46350.1| (M10376) ORF5; putative [Cauliflower mosaic virus] Length = 675 Score = 159 bits (397), Expect = 5e-036 Identities = 120/414 (28%), Positives = 198/414 (46%), Gaps = 19/414 (4%) Frame = -2 Query: 51682 TQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVR----KKDGSLQMS 51515 ++ I + P + +P + +E +Q+++LL+ I+PS SP AP V K+ G +M Sbjct: 240 SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMV 299 Query: 51514 IEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTR 51335 + YK +NK TV + Y P D+L ++G K FS S + +V + + P TAF Sbjct: 300 VNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFHCNSGFWQVLLDQESRPLTAFTCP 359 Query: 51334 YGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTV 51155 GHY++ V+ FG+ A ++F M+ F+ F F V+VDDILV+S +EE+H H+ + Sbjct: 360 QGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMI 418 Query: 51154 LRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT---PTEV 50984 L+ + K + + + FLG I + +E + + P T ++ Sbjct: 419 LQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKF--PDTLEDKKQL 476 Query: 50983 RSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLP 50804 + FL + Y ++ K A I PL ++ + WT +K L P L+ P Sbjct: 477 QRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQAFPPLHHP 536 Query: 50803 EGPDGYVIYCDTS----GVGLGCVLMQHGK----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + +I D S G L + + G + YAS + E NY ++D + V Sbjct: 537 LPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAV 596 Query: 50647 VHALKIWRHYLYGFHVDIYTDHKSLQYI----FKQKELYLRQRRWLELLKDYDVDILYHL 50480 ++ +K + YL H I TD+ + +K R RW L Y D+ + Sbjct: 597 INTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIK 656 Query: 50479 GKANVVVDALSRK 50441 G N D LSR+ Sbjct: 657 GTDNHFADFLSRE 669 >gb|AAG15480.1| (AF259976) polyprotein [Oryza sativa subsp. indica] Length = 567 Score = 158 bits (395), Expect = 8e-036 Identities = 114/405 (28%), Positives = 188/405 (46%), Gaps = 11/405 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSP-WGAPVLFVRKK 51536 IE ++ V D +PI R A +KE+L LL GFI+ P W A + VRKK Sbjct: 9 IEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKK 68 Query: 51535 DGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIP 51356 G +M ++Y LNK K+ + LPRID + D G + S +D S YH++R++E+D Sbjct: 69 TGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCL 128 Query: 51355 KTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEH 51176 KT+F T +G Y + + FG+ NA A + ++ R F + V +VDD++V ++ +++ Sbjct: 129 KTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDL 188 Query: 51175 ADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT 50996 L ++ ++ K F + S LG ++ GI+ + +K+ A+ P+T Sbjct: 189 ISDLEETFASIRAFRMKLNPEKYIFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPST 248 Query: 50995 PTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPF 50816 +V+ RFV + P +L +K F W +++F K LT P Sbjct: 249 QKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTEPPV 308 Query: 50815 LNLPEGPDGYVIYCDTSGVGLGCVLM----QHGKV------IAYASRQLRKHENNYPTHD 50666 L P + ++Y + + VL+ + G V I + S L + YP Sbjct: 309 LASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVR 368 Query: 50665 LKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDV 50498 L ++ + HY G V + T L I +E R +W L D+ Sbjct: 369 KLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDI 423 Score = 47.3 bits (110), Expect(2) = 8e-006 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Frame = +2 Query: 8756 FI*QNISP-WGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXX 8932 FI + + P W A + +RKK R+C+DY N K + L RI Sbjct: 49 FIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELL 108 Query: 8933 XNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 ++ SG H+++++E D KT+FI +G Y ++ + Sbjct: 109 SFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTM 144 Score = 30.9 bits (68), Expect(2) = 8e-006 Identities = 27/117 (23%), Positives = 44/117 (37%) Frame = +1 Query: 9160 KEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFP 9339 K+D SDL ++R + K F + LG ++S GI+ + EK+ + + Sbjct: 185 KDDLISDLEETFASIRAFRMKLNPEKYIFGVPSGKLLGFMVSHRGIQANPEKVTAILNMK 244 Query: 9340 RPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 P K++ RFV R P K+ FQ + F + K Sbjct: 245 PPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKK 301 >gb|AAB03327.1| (U59751) ORF 3 [Cassava vein mosaic virus] Length = 652 Score = 158 bits (395), Expect = 8e-036 Identities = 124/419 (29%), Positives = 207/419 (48%), Gaps = 29/419 (6%) Frame = -2 Query: 51700 IDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTS----PWGAPVLFVRK-- 51539 I++ +T I+ PP +L E K + +++++GFI T+ + +P V K Sbjct: 195 IELKNETDNIYKPPMLYQETDLPEFKMHIEEMIKEGFIEEKTNFEDKKYSSPAFIVNKHS 254 Query: 51538 --KDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREA 51365 K G +M I+YK LNK +YP+P D L + A+ +SK D +S ++ +++ E Sbjct: 255 EQKRGKTRMVIDYKDLNKKAKVVKYPIPNKDTLIHRSIQARYYSKFDCKSGFYHIKLEED 314 Query: 51364 DIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSE 51185 TAF G+Y ++VL FG N+ ++F M+R+F+P+ D F+IV++DDILV+S++ Sbjct: 315 SKKYTAFTVPQGYYQWKVLPFGYHNSPSIFQQFMDRIFRPYYD-FIIVYIDDILVFSKTI 373 Query: 51184 EEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAV-KTWT 51008 EEH H+ + L K E + FLG I GI + I + + T Sbjct: 374 EEHKIHIAKFRDITLANGLIISKKKTELCKEKIDFLGVQIEQGGIELQPHIINKILEKHT 433 Query: 51007 RPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAK------F*WTNACERSF*L 50846 + TE++S L L R F+ A I P+ QK K + WT E L Sbjct: 434 KIKNKTELQSILGLLNQIRHFIPHLAQILLPI----QKKLKIKDEEIWTWTKEDEEKIKL 489 Query: 50845 LKD---KLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGK------VIAYASRQLRK 50693 ++D L I + + ++I D S G L K + Y S ++ Sbjct: 490 IQDYSKNLVIKMKYPINKEDMNWIIEVDASNNAYGSCLKYKPKNSKIEYLCRYNSGTFKE 549 Query: 50692 HENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFK----QKELYLRQRRW 50525 +E Y + +L V L+ + + + + TD+ + Y K +K + R ++ Sbjct: 550 NEQKYDINRKELIAVYQGLQSYSLFTCEGNKLVRTDNSQVYYWIKNDTNKKSIEFRNIKY 609 Query: 50524 -LELLKDYDVDILYHLGKANVVVDALSR 50444 L + Y+ +I GK N++ D LSR Sbjct: 610 LLAKIAVYNFEIQLIDGKTNIIADYLSR 637 Score = 33.2 bits (74), Expect(2) = 1.4 Identities = 34/142 (23%), Positives = 52/142 (35%), Gaps = 1/142 (0%) Frame = +1 Query: 9016 WALFISGYFHCFDIAPAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVL 9195 W + GY + +P+ F M R+F+P+ D F +S E+H + Sbjct: 330 WKVLPFGYHN----SPSIFQQFMDRIFRPYYD-FIIVYIDDILVFSKTIEEHKIHIAKFR 384 Query: 9196 QTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPK-NI*SF 9372 + K E C + + FLG I GI + I I K + S Sbjct: 385 DITLANGLIISKKKTELCKEKIDFLGVQIEQGGIELQPHIINKILEKHTKIKNKTELQSI 444 Query: 9373 LALAYYYRRFVDRFSSISSPLTK 9441 L L R F+ + I P+ K Sbjct: 445 LGLLNQIRHFIPHLAQILLPIQK 467 Score = 26.6 bits (57), Expect(2) = 1.4 Identities = 18/78 (23%), Positives = 30/78 (38%) Frame = +2 Query: 8807 KKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECD 8986 +K+ R+ IDY N KYP+ + +SG + +K+ E Sbjct: 256 QKRGKTRMVIDYKDLNKKAKVVKYPIPNKDTLIHRSIQARYYSKFDCKSGFYHIKLEEDS 315 Query: 8987 VPKTNFIKRYGHYLFLVI 9040 T F G+Y + V+ Sbjct: 316 KKYTAFTVPQGYYQWKVL 333 >gb|AAA79873.1| (U20341) ORF III [Cassava vein mosaic virus] Length = 652 Score = 158 bits (395), Expect = 8e-036 Identities = 124/419 (29%), Positives = 207/419 (48%), Gaps = 29/419 (6%) Frame = -2 Query: 51700 IDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTS----PWGAPVLFVRK-- 51539 I++ +T I+ PP +L E K + +++++GFI T+ + +P V K Sbjct: 195 IELKNETDNIYKPPMLYQETDLPEFKMHIEEMIKEGFIEEKTNFEDKKYSSPAFIVNKHS 254 Query: 51538 --KDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREA 51365 K G +M I+YK LNK +YP+P D L + A+ +SK D +S ++ +++ E Sbjct: 255 EQKRGKTRMVIDYKDLNKKAKVVKYPIPNKDTLIHRSIQARYYSKFDCKSGFYHIKLEED 314 Query: 51364 DIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSE 51185 TAF G+Y ++VL FG N+ ++F M+R+F+P+ D F+IV++DDILV+S++ Sbjct: 315 SKKYTAFTVPQGYYQWKVLPFGYHNSPSIFQQFMDRIFRPYYD-FIIVYIDDILVFSKTI 373 Query: 51184 EEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAV-KTWT 51008 EEH H+ + L K E + FLG I GI + I + + T Sbjct: 374 EEHKIHIAKFRDITLANGLIISKKKTELCKEKIDFLGVQIEQGGIELQPHIINKILEKHT 433 Query: 51007 RPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAK------F*WTNACERSF*L 50846 + TE++S L L R F+ A I P+ QK K + WT E L Sbjct: 434 KIKNKTELQSILGLLNQIRHFIPHLAQILLPI----QKKLKIKDEEIWTWTKEDEEKIKL 489 Query: 50845 LKD---KLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGK------VIAYASRQLRK 50693 ++D L I + + ++I D S G L K + Y S ++ Sbjct: 490 IQDYSKNLVIKMKYPINKEDMNWIIEVDASNNAYGSCLKYKPKNSKIEYLCRYNSGTFKE 549 Query: 50692 HENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFK----QKELYLRQRRW 50525 +E Y + +L V L+ + + + + TD+ + Y K +K + R ++ Sbjct: 550 NEQKYDINRKELIAVYQGLQSYSLFTCEGNKLVRTDNSQVYYWIKNDTNKKSIEFRNIKY 609 Query: 50524 -LELLKDYDVDILYHLGKANVVVDALSR 50444 L + Y+ +I GK N++ D LSR Sbjct: 610 LLAKIAVYNFEIQLIDGKTNIIADYLSR 637 Score = 33.2 bits (74), Expect(2) = 1.4 Identities = 34/142 (23%), Positives = 52/142 (35%), Gaps = 1/142 (0%) Frame = +1 Query: 9016 WALFISGYFHCFDIAPAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVL 9195 W + GY + +P+ F M R+F+P+ D F +S E+H + Sbjct: 330 WKVLPFGYHN----SPSIFQQFMDRIFRPYYD-FIIVYIDDILVFSKTIEEHKIHIAKFR 384 Query: 9196 QTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPK-NI*SF 9372 + K E C + + FLG I GI + I I K + S Sbjct: 385 DITLANGLIISKKKTELCKEKIDFLGVQIEQGGIELQPHIINKILEKHTKIKNKTELQSI 444 Query: 9373 LALAYYYRRFVDRFSSISSPLTK 9441 L L R F+ + I P+ K Sbjct: 445 LGLLNQIRHFIPHLAQILLPIQK 467 Score = 26.6 bits (57), Expect(2) = 1.4 Identities = 18/78 (23%), Positives = 30/78 (38%) Frame = +2 Query: 8807 KKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECD 8986 +K+ R+ IDY N KYP+ + +SG + +K+ E Sbjct: 256 QKRGKTRMVIDYKDLNKKAKVVKYPIPNKDTLIHRSIQARYYSKFDCKSGFYHIKLEEDS 315 Query: 8987 VPKTNFIKRYGHYLFLVI 9040 T F G+Y + V+ Sbjct: 316 KKYTAFTVPQGYYQWKVL 333 >dbj|BAB03352.1| (AP002486) Similar to Oryza sativa gypsy-type retrotransposon RIRE2; GAG-POL precursor -orf2 (AB030283) Length = 1032 Score = 157 bits (394), Expect = 1e-035 Identities = 114/405 (28%), Positives = 188/405 (46%), Gaps = 11/405 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSP-WGAPVLFVRKK 51536 IE ++ V D +PI R A +KE+L LL GFI+ P W A + VRKK Sbjct: 9 IEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKK 68 Query: 51535 DGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIP 51356 G +M ++Y LNK K+ + LPRID + D G + S +D S YH++R++E+D Sbjct: 69 TGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCL 128 Query: 51355 KTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEH 51176 KT+F T +G Y + + FG+ NA A + ++ R F + V +VDD++V ++ +++ Sbjct: 129 KTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDL 188 Query: 51175 ADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT 50996 L ++ ++ KC F + S LG ++ GI+ + +K+ A+ P+T Sbjct: 189 ILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPST 248 Query: 50995 PTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPF 50816 +V+ RFV + P +L +K F +++F K LT P Sbjct: 249 QKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQGRPEAQKAFEDFKKLLTEPPV 308 Query: 50815 LNLPEGPDGYVIYCDTSGVGLGCVLM----QHGKV------IAYASRQLRKHENNYPTHD 50666 L P + ++Y + + VL+ + G V I + S L + YP Sbjct: 309 LASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQ 368 Query: 50665 LKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDV 50498 L ++ + HY G V + T L I +E R +W L D+ Sbjct: 369 KLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLDI 423 Score = 73.4 bits (177), Expect = 3e-010 Identities = 56/231 (24%), Positives = 102/231 (43%), Gaps = 5/231 (2%) Frame = -3 Query: 50145 RQVMGEEHSA-CYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG 49969 RQ++ + HS C + T + R ++W D + V C CQ + Sbjct: 678 RQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPA 737 Query: 49968 GLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYV 49789 LQ I + +W + + +D + + ++V ID+ +K PV T + D Sbjct: 738 QELQTIPL-SWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITA--DNA 794 Query: 49788 RLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQ 49609 R + IV GVP II+D G QFT ++ F + G ++ ++ HP ++G+ ER Sbjct: 795 RDFFINIVHRFGVPNRIITDNGTQFTGEVFKDFCEDFGIKICYASVAHPMSNGQVERANG 854 Query: 49608 TLEDMLRASIID----FKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 + ++A + D + G W LP + ++ + +P+ +YG + P Sbjct: 855 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLP 910 Score = 47.3 bits (110), Expect(2) = 3e-005 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Frame = +2 Query: 8756 FI*QNISP-WGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXX 8932 FI + + P W A + +RKK R+C+DY N K + L RI Sbjct: 49 FIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELL 108 Query: 8933 XNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 ++ SG H+++++E D KT+FI +G Y ++ + Sbjct: 109 SFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTM 144 Score = 29.0 bits (63), Expect(2) = 3e-005 Identities = 26/117 (22%), Positives = 43/117 (36%) Frame = +1 Query: 9160 KEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFP 9339 K+D DL ++R + K F + LG ++S GI+ + EK+ + + Sbjct: 185 KDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMK 244 Query: 9340 RPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 P K++ RFV R P K+ FQ + F + K Sbjct: 245 PPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQGRPEAQKAFEDFKK 301 >gb|AAB18334.1| (U75247) reverse transcriptase [Gossypium barbadense] Length = 103 Score = 157 bits (394), Expect = 1e-035 Identities = 68/103 (66%), Positives = 89/103 (86%) Frame = -2 Query: 51373 READIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYS 51194 R++D+PKTAF TRYGHY+F V+ FG+TNA AVFMDLMNR+F+ +LD FV+VF+DDILVYS Sbjct: 1 RDSDVPKTAFRTRYGHYEFLVMPFGLTNAPAVFMDLMNRIFRQYLDRFVVVFIDDILVYS 60 Query: 51193 RSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHII 51065 E EHA+HLR VL++L+ ++LYA FSKCEFWL ++FLGH++ Sbjct: 61 GDETEHAEHLRLVLQILRDKQLYAKFSKCEFWLREVSFLGHVV 103 Score = 71.8 bits (173), Expect(2) = 2e-014 Identities = 36/75 (48%), Positives = 49/75 (65%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA FM LM+R+F+ +LD F YS ++ +HA LR+VLQ LR+K+ KFSK Sbjct: 29 APAVFMDLMNRIFRQYLDRFVVVFIDDILVYSGDETEHAEHLRLVLQILRDKQLYAKFSK 88 Query: 9238 *EFCLKYVVFLGHII 9282 EF L+ V FLGH++ Sbjct: 89 CEFWLREVSFLGHVV 103 Score = 35.6 bits (80), Expect(2) = 2e-014 Identities = 17/27 (62%), Positives = 19/27 (69%) Frame = +2 Query: 8975 RECDVPKTNFIKRYGHYLFLVIFIVLT 9055 R+ DVPKT F RYGHY FLV+ LT Sbjct: 1 RDSDVPKTAFRTRYGHYEFLVMPFGLT 27 >gb|AAD27571.1|AF114171_12 (AF114171) polyprotein [Sorghum bicolor] Length = 1877 Score = 157 bits (393), Expect = 1e-035 Identities = 113/405 (27%), Positives = 195/405 (47%), Gaps = 9/405 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSP-WGAPVLFVRKK 51536 IE ++D+ +P +M+ K +++ LL+ IR P W A V+ V KK Sbjct: 865 IEHSLDIDPRMRPKKQRQRKMSEERTLAAKAEVQRLLDAKVIREVIYPEWLANVVLVPKK 924 Query: 51535 DGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIP 51356 +G ++M I++ LNK VK+ +PLPRID D+ G + FS +D S YH++ +++ D Sbjct: 925 NGKMRMCIDFTDLNKACVKDSFPLPRIDTSVDKAAGCQRFSLLDCFSGYHQIWLKKEDEG 984 Query: 51355 KTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEH 51176 K +F T +G Y + + G+ NA A F +M +V L +I +VDD++V S+ +E+H Sbjct: 985 KASFTTPFGTYCYTRMPEGLKNAGATFSRMMGKVLGSQLQRNIIAYVDDVVVMSKRKEDH 1044 Query: 51175 ADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT 50996 L+ L+ L KC F ++ LG+II ++GIR + K +A+ + P+ Sbjct: 1045 IKDLQETFVNLRSAGLKLNPEKCVFGVSKGKMLGYIISSEGIRANPDKTKAIMSMAEPSN 1104 Query: 50995 PTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPF 50816 EV+ RF+ + A S P ++ ++ K W +F LK+ + Sbjct: 1105 KKEVQRLTGRIAALNRFISRSAERSLPFFKVLRE-GKTEWGPEQSEAFRQLKNYIATNLL 1163 Query: 50815 LNLPEGPDGYVIYCDTSGVGLGCVLMQH--------GKVIAYASRQLRKHENNYPTHDLK 50660 + +PE ++Y S + VL+ + + Y S L + NY + Sbjct: 1164 VTVPEPDTPLLLYVAASEHAVSGVLVHETSDTKGTVQRPVYYVSEALSGAKLNYTEIEKI 1223 Query: 50659 LEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDV 50498 V+ A + +HY + + T + L I + KE R +W L +D+ Sbjct: 1224 AYAVLCASRKLKHYFQSHEIKVPTS-QPLGDILRNKEASGRIGKWAAELSQFDI 1276 Score = 84.7 bits (206), Expect = 1e-013 Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 2/231 (0%) Frame = -3 Query: 50145 RQVMGEEHSACYSINPGSTKMYHD-LRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG 49969 R+++ E HS + G + LR ++W +D E V C CQ Sbjct: 1528 RELLREIHSGMCGSHIGPRALSAKALRQGFYWPTHIRDAEEIVKTCKACQTFSPIQSGPS 1587 Query: 49968 GLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYV 49789 L Q I +W + MD + +P Q V I+ T+ P+ TT ++E Sbjct: 1588 ALTQLIPA-SWPLQRWGMDLVGPMPTAQGGNKFAVVAIEYFTRWIEAKPL-TTITSETIR 1645 Query: 49788 RLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQ 49609 + + + IV GVP + D G QF ++ ++ F +GT++ ++ +HP+++G ER + Sbjct: 1646 KFFWQNIVCRFGVPRLLTVDNGKQFDSDNFKEFCHLIGTKIAFASVYHPESNGAVERANR 1705 Query: 49608 TLEDMLRASIIDF-KGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 T+ + ++++ KG W + LP + +++N + P++ LYG + P Sbjct: 1706 TIFSAISKTLLNLRKGKWVEELPRVVWSHNTTVSRATGFTPFKLLYGEEAMLP 1758 Score = 43.4 bits (100), Expect(2) = 3e-008 Identities = 36/129 (27%), Positives = 51/129 (38%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 A A F +M +V L S KEDH DL+ LR+ + K Sbjct: 1007 AGATFSRMMGKVLGSQLQRNIIAYVDDVVVMSKRKEDHIKDLQETFVNLRSAGLKLNPEK 1066 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + LG+IIS EGIR + +K ++ S P K + RF+ R + Sbjct: 1067 CVFGVSKGKMLGYIISSEGIRANPDKTKAIMSMAEPSNKKEVQRLTGRIAALNRFISRSA 1126 Query: 9418 SISSPLTKI 9444 S P K+ Sbjct: 1127 ERSLPFFKV 1135 Score = 43.0 bits (99), Expect(2) = 3e-008 Identities = 27/97 (27%), Positives = 45/97 (45%), Gaps = 1/97 (1%) Frame = +2 Query: 8741 MFDKSFI*QNISP-WGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXX 8917 + D I + I P W A V+ + KK +R+CID+ N K +PL RI Sbjct: 900 LLDAKVIREVIYPEWLANVVLVPKKNGKMRMCIDFTDLNKACVKDSFPLPRIDTSVDKAA 959 Query: 8918 XXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLF 9031 ++ SG H++ +++ D K +F +G Y + Sbjct: 960 GCQRFSLLDCFSGYHQIWLKKEDEGKASFTTPFGTYCY 997 >gb|AAD19359.1| (AF098806) polyprotein [Sorghum bicolor] Length = 1877 Score = 157 bits (393), Expect = 1e-035 Identities = 113/405 (27%), Positives = 195/405 (47%), Gaps = 9/405 (2%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSP-WGAPVLFVRKK 51536 IE ++D+ +P +M+ K +++ LL+ IR P W A V+ V KK Sbjct: 865 IEHSLDIDPRMRPKKQRQRKMSEERTLAAKAEVQRLLDAKVIREVIYPEWLANVVLVPKK 924 Query: 51535 DGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIP 51356 +G ++M I++ LNK VK+ +PLPRID D+ G + FS +D S YH++ +++ D Sbjct: 925 NGKMRMCIDFTDLNKACVKDSFPLPRIDTSVDKAAGCQRFSLLDCFSGYHQIWLKKEDEG 984 Query: 51355 KTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEH 51176 K +F T +G Y + + G+ NA A F +M +V L +I +VDD++V S+ +E+H Sbjct: 985 KASFTTPFGTYCYTRMPEGLKNAGATFSRMMGKVLGSQLQRNIIAYVDDVVVMSKRKEDH 1044 Query: 51175 ADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT 50996 L+ L+ L KC F ++ LG+II ++GIR + K +A+ + P+ Sbjct: 1045 IKDLQETFVNLRSAGLKLNPEKCVFGVSKGKMLGYIISSEGIRANPDKTKAIMSMAEPSN 1104 Query: 50995 PTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPF 50816 EV+ RF+ + A S P ++ ++ K W +F LK+ + Sbjct: 1105 KKEVQRLTGRIAALNRFISRSAERSLPFFKVLRE-GKTEWGPEQSEAFRQLKNYIATNLL 1163 Query: 50815 LNLPEGPDGYVIYCDTSGVGLGCVLMQH--------GKVIAYASRQLRKHENNYPTHDLK 50660 + +PE ++Y S + VL+ + + Y S L + NY + Sbjct: 1164 VTVPEPDTPLLLYVAASEHAVSGVLVHETSDTKGTVQRPVYYVSEALSGAKLNYTEIEKI 1223 Query: 50659 LEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDV 50498 V+ A + +HY + + T + L I + KE R +W L +D+ Sbjct: 1224 AYAVLCASRKLKHYFQSHEIKVPTS-QPLGDILRNKEASGRIGKWAAELSQFDI 1276 Score = 84.7 bits (206), Expect = 1e-013 Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 2/231 (0%) Frame = -3 Query: 50145 RQVMGEEHSACYSINPGSTKMYHD-LRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG 49969 R+++ E HS + G + LR ++W +D E V C CQ Sbjct: 1528 RELLREIHSGMCGSHIGPRALSAKALRQGFYWPTHIRDAEEIVKTCKACQTFSPIQSGPS 1587 Query: 49968 GLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYV 49789 L Q I +W + MD + +P Q V I+ T+ P+ TT ++E Sbjct: 1588 ALTQLIPA-SWPLQRWGMDLVGPMPTAQGGNKFAVVAIEYFTRWIEAKPL-TTITSETIR 1645 Query: 49788 RLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQ 49609 + + + IV GVP + D G QF ++ ++ F +GT++ ++ +HP+++G ER + Sbjct: 1646 KFFWQNIVCRFGVPRLLTVDNGKQFDSDNFKEFCHLIGTKIAFASVYHPESNGAVERANR 1705 Query: 49608 TLEDMLRASIIDF-KGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 T+ + ++++ KG W + LP + +++N + P++ LYG + P Sbjct: 1706 TIFSAISKTLLNLRKGKWVEELPRVVWSHNTTVSRATGFTPFKLLYGEEAMLP 1758 Score = 43.4 bits (100), Expect(2) = 3e-008 Identities = 36/129 (27%), Positives = 51/129 (38%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 A A F +M +V L S KEDH DL+ LR+ + K Sbjct: 1007 AGATFSRMMGKVLGSQLQRNIIAYVDDVVVMSKRKEDHIKDLQETFVNLRSAGLKLNPEK 1066 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F + LG+IIS EGIR + +K ++ S P K + RF+ R + Sbjct: 1067 CVFGVSKGKMLGYIISSEGIRANPDKTKAIMSMAEPSNKKEVQRLTGRIAALNRFISRSA 1126 Query: 9418 SISSPLTKI 9444 S P K+ Sbjct: 1127 ERSLPFFKV 1135 Score = 43.0 bits (99), Expect(2) = 3e-008 Identities = 27/97 (27%), Positives = 45/97 (45%), Gaps = 1/97 (1%) Frame = +2 Query: 8741 MFDKSFI*QNISP-WGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXX 8917 + D I + I P W A V+ + KK +R+CID+ N K +PL RI Sbjct: 900 LLDAKVIREVIYPEWLANVVLVPKKNGKMRMCIDFTDLNKACVKDSFPLPRIDTSVDKAA 959 Query: 8918 XXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLF 9031 ++ SG H++ +++ D K +F +G Y + Sbjct: 960 GCQRFSLLDCFSGYHQIWLKKEDEGKASFTTPFGTYCY 997 >gb|AAA46358.1| (M90541) reverse transcriptase [Cauliflower mosaic virus] Length = 680 Score = 155 bits (389), Expect = 4e-035 Identities = 117/414 (28%), Positives = 199/414 (47%), Gaps = 19/414 (4%) Frame = -2 Query: 51682 TQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKD----GSLQMS 51515 ++ I + P + +P + +E +Q+++LL+ I+PS SP AP V + G+ +M Sbjct: 245 SKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMV 304 Query: 51514 IEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTR 51335 + YK +NK TV + Y LP D+L ++G K FS D +S + +V + + P TAF Sbjct: 305 VNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCP 364 Query: 51334 YGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTV 51155 GHY++ V+ FG+ A ++F M+ F+ F F V+VDDI+V+S +EE+H H+ + Sbjct: 365 QGHYEWNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDIVVFSNNEEDHLLHVAMI 423 Query: 51154 LRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT---PTEV 50984 L+ + K + + + FLG I + +E + + P T ++ Sbjct: 424 LQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKF--PDTLEDKKQL 481 Query: 50983 RSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLP 50804 + FL + Y ++ A + PL ++ + WT +K L P L+ P Sbjct: 482 QRFLGILTYASDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHP 541 Query: 50803 EGPDGYVIYCDTS----GVGLGCVLMQHGK----VIAYASRQLRKHENNYPTHDLKLEIV 50648 + +I D S G L + + G + Y S + E NY ++D + V Sbjct: 542 LPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAV 601 Query: 50647 VHALKIWRHYLYGFHVDIYTDHKSLQYI----FKQKELYLRQRRWLELLKDYDVDILYHL 50480 ++ +K + YL H I TD+ + +K R RW L Y D+ + Sbjct: 602 INTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIK 661 Query: 50479 GKANVVVDALSRK 50441 G N D LSR+ Sbjct: 662 GTDNHFADFLSRE 674 >gb|AAD15474.1| (AC006067) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1466 Score = 153 bits (384), Expect = 2e-034 Identities = 99/334 (29%), Positives = 165/334 (48%), Gaps = 5/334 (1%) Frame = -2 Query: 51634 KELKEQLRDLLEKGFIRPSTSP-WGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPR 51458 K + +++ LL+ G IR P W A + V+KK+G ++ I++ LNK K+ +PLP Sbjct: 478 KAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPH 537 Query: 51457 IDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAV 51278 ID L + G + S +D S Y+++ + D KT F T G Y ++V+ FG+ NA A Sbjct: 538 IDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPFGLRNAGAT 597 Query: 51277 FMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFW 51098 + L+N++F + + V++DD+L+ S +E+H HL +L ++ +KC F Sbjct: 598 YPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKLNPAKCTFG 657 Query: 51097 LTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISA 50918 + S FLG+I+ GI + +I A P EV+ RF+ + S Sbjct: 658 VPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFISRSTDKSL 717 Query: 50917 PLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLM 50738 P ++ + +F W CE +F LK LT P L PE + +Y S + VL+ Sbjct: 718 PFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSNHAVSGVLI 777 Query: 50737 QHG----KVIAYASRQLRKHENNYPTHDLKLEIVVHALK 50633 + K I Y + + +Y D ++E +H +K Sbjct: 778 REDRGEQKPIYYII--VNQFNGDYEAKDSRMEAYLHVVK 814 Score = 52.3 bits (123), Expect = 6e-004 Identities = 56/229 (24%), Positives = 88/229 (37%), Gaps = 2/229 (0%) Frame = -3 Query: 50139 VMGEEHSA-CYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*-VKIEHQKSGG 49966 VM E H C S + G + + Y+W M D ++ +C CQ + HQ S Sbjct: 974 VMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHAPLIHQPSE- 1032 Query: 49965 LLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVR 49786 L I P + + +MD I L R+ T+ +L V T Y + + Sbjct: 1033 LFSSISAP-YPFMRWSMDIIGPLHRS--------------TRGVQYLLVLTDY----FSK 1073 Query: 49785 LYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQT 49606 E + L+ W G +V+ ST +PQ +G++E +T Sbjct: 1074 WIEAEAILLN------------------W-------GIKVSYSTLRYPQGNGQAEAANKT 1108 Query: 49605 LEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 + L+ + KG W D L + +AY S P+ +YG K P Sbjct: 1109 ILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTGETPFSLVYGMKAVVP 1159 Score = 41.8 bits (96), Expect(2) = 1e-005 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 7/154 (4%) Frame = +1 Query: 9043 HCFDIAP-------AAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQT 9201 +C+ + P A + L++++F + S KEDH L Sbjct: 582 YCYKVMPFGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAI 641 Query: 9202 LRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLAL 9381 L + + +K F + FLG+I++ GI + +I ++ + P P K + Sbjct: 642 LNQYQMKLNPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGR 701 Query: 9382 AYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFREL 9504 RF+ R + S P +I +F E CE F +L Sbjct: 702 IAALNRFISRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQL 742 Score = 36.0 bits (81), Expect(2) = 1e-005 Identities = 23/87 (26%), Positives = 37/87 (42%) Frame = +2 Query: 8780 WGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGC 8959 W A + ++KK R+CID+ N K +PL I ++ SG Sbjct: 501 WLANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLSFMDAFSGY 560 Query: 8960 HKMKVRECDVPKTNFIKRYGHYLFLVI 9040 +++ + D KT FI G Y + V+ Sbjct: 561 NQIMMNPEDQEKTLFITDRGIYCYKVM 587 >gb|AAA03171.1| (L14546) polyprotein [Cacao swollen shoot virus] Length = 1834 Score = 153 bits (384), Expect = 2e-034 Identities = 137/448 (30%), Positives = 222/448 (48%), Gaps = 33/448 (7%) Frame = -2 Query: 51697 DVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPW---------GAPVLFV 51545 D++++ +PI + PA K+ ++ ++ LL+ G IRPS S G + V Sbjct: 1278 DLIIEDKPI----KHLTPAMEKQFQKHIKALLDIGVIRPSKSKHRTTAFIVESGTVIDPV 1333 Query: 51544 RKKD--GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVR 51371 KK G ++ YK+LN T K++Y LP I + ++ K FSK DL+S +H+V + Sbjct: 1334 TKKTIHGKERLVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKKVFSKFDLKSGFHQVAMA 1393 Query: 51370 EADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSR 51191 E IP TAFW G Y++ V+ FG+ NA AVF M++ FK + F+ V++DDILV+S Sbjct: 1394 EESIPWTAFWVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKG-TEEFIAVYIDDILVFSE 1452 Query: 51190 SEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAV--K 51017 + EH H+ +L++ Q L SK + FLG +I +++ I+ + K Sbjct: 1453 NMAEHTKHIGIMLKICQENGLVLSPSKICLAQREIEFLGTVISQGQMKLQAHVIKKIVNK 1512 Query: 51016 TWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKD 50837 T +RSFL L Y R ++ +PL T + + +KD Sbjct: 1513 ANIELETTKGLRSFLGLLNYARIYIPNLGRKLSPLYAKTSPTGEKRFNRQDWHLIKEIKD 1572 Query: 50836 KLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVL---------MQHGKVIAYASRQLRKHEN 50684 + P L +P +I D G G V K+ AYAS + ++ Sbjct: 1573 MVQKLPNLAIPPARCYIIIESDGCMEGWGAVCKWKLAKEDSRTTEKICAYASGKFGVVKS 1632 Query: 50683 NYPTHDLKLEIVVHALKIWR-HYLYGFHVDIYTDHKSLQYIFKQKELYLRQR-RWLELLK 50510 T D ++ ++ AL+ ++ YL H+ + TD +++ + + + R RW+ Sbjct: 1633 ---TIDAEIYALIKALESFKIFYLDKKHLVVRTDCQAIVTFYNKTSTHKPSRIRWI-TFS 1688 Query: 50509 DY------DVDILYHLGKANVVVDALSR---KSMGSLTDVQPEMREMVRDIQRLSSLGVC 50357 DY V I + GK N + D LSR + QPE E+ + Q LS G+ Sbjct: 1689 DYITGLGVPVTIEHIDGKENQLADTLSRLVYTTWNQSQTHQPEEEELEKS-QHLSFAGLA 1747 Query: 50356 L 50354 + Sbjct: 1748 I 1748 >gb|AAD22507.1|AC007045_7 (AC007045) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 976 Score = 150 bits (375), Expect = 2e-033 Identities = 94/274 (34%), Positives = 140/274 (50%), Gaps = 4/274 (1%) Frame = -2 Query: 51265 MNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSL 51086 M +F ++ + VF+DD VY E+ ++L VL + + L + KC F + Sbjct: 82 MMSIFTDMIEDIMEVFMDDFSVYGSLFEDCLENLYKVLARCEEKHLVLNWEKCHFRVQDG 141 Query: 51085 AFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIR 50906 LGH I GI D KIE + + VRSFL A +YRRF++ F+ I+ PL Sbjct: 142 IVLGHRISEYGIEADRAKIEVMTSLQALDNLKAVRSFLGHAGFYRRFIKDFSKIARPLTS 201 Query: 50905 LTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHG- 50729 L K KF +T C +F +K L AP + P+ + + CD S +G VL Q Sbjct: 202 LLCKEVKFEFTQECHDAFQQIKQALISAPIVQPPDWDLPFEVMCDASDFAVGAVLGQRKD 261 Query: 50728 ---KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFK 50558 I YASR L + NY T + + VV A + +R YL G V ++TDH +L+Y+ + Sbjct: 262 KKLHAIYYASRTLDDAKRNYATTEKEFLAVVFAFEKFRSYLVGLKVIVHTDHAALKYLMQ 321 Query: 50557 QKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 K+ R RW+ LL+++D+++ G V D LSR Sbjct: 322 NKDAKPRLLRWILLLQEFDIEVRDKKGVEKCVADHLSR 359 Score = 60.1 bits (143), Expect = 3e-006 Identities = 44/140 (31%), Positives = 65/140 (46%) Frame = +1 Query: 9163 EDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPR 9342 ED +L VL K + + K F ++ + LGH IS GI D+ KIE S Sbjct: 109 EDCLENLYKVLARCEEKHLVLNWEKCHFRVQDGIVLGHRISEYGIEADRAKIEVMTSLQA 168 Query: 9343 PIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXX 9522 K + SFL A +YRRF+ FS I+ PLT + +V+F+ ++ C F+++ + Sbjct: 169 LDNLKAVRSFLGHAGFYRRFIKDFSKIARPLTSLLCKEVKFEFTQECHDAFQQIKQALIS 228 Query: 9523 XXXXXXXXXXHVFIVYCHAS 9582 F V C AS Sbjct: 229 APIVQPPDWDLPFEVMCDAS 248 Score = 48.0 bits (112), Expect = 0.012 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 19/172 (11%) Frame = -3 Query: 49869 IWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSF 49690 I V++D ++K + SA ++L+ I GVP +ISD G F Sbjct: 589 ILVVVDYVSKWVEAIASPKNDSAV-VMKLFKCIIFPHFGVPRIVISDGGKHFINKILTKL 647 Query: 49689 QKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYH 49510 G Q ++T +HPQT G+ E + + ++++L ++ + Sbjct: 648 LLQYGVQHRVATPYHPQTSGQVEVSNRQIKEILEKTVA--------------------FK 687 Query: 49509 SSIQMAPYEALYGRKCRSPI------GW------FDV---GETKLIGPDMIQQV----VD 49387 + + P+ LYG+ C P+ W FD+ GE +LI + + ++ D Sbjct: 688 TPLGTTPFHLLYGKACHLPVELEHKAAWTVKMLNFDIKSAGERRLIQLNELDEIQIHAYD 747 Query: 49386 KVKLIQERLLA 49354 KL +ER A Sbjct: 748 NSKLYKERTKA 758 >emb|CAA29429.1| (X06034) reverse transcriptose-like protein (AA 1-143) [Oenothera berteriana] Length = 142 Score = 149 bits (373), Expect = 3e-033 Identities = 71/125 (56%), Positives = 95/125 (75%), Gaps = 3/125 (2%) Frame = -2 Query: 51529 SLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKT 51350 SL+M I+Y+ L KVT+KN+YP+PR+DDLFD+L A F+K+DLRS Y +VR+ + D PKT Sbjct: 5 SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64 Query: 51349 AFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILV---YSRSEEE 51179 TRYG ++FRV+ FG+TNALA F +LMN V +LD FV+V++DD++V YS S E Sbjct: 65 TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124 Query: 51178 HADHLRTV 51155 H HLR V Sbjct: 125 HIKHLRVV 132 Score = 55.0 bits (130), Expect = 9e-005 Identities = 28/78 (35%), Positives = 41/78 (51%) Frame = +2 Query: 8822 LRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTN 9001 LR+CIDY VT K KYP+ R+ ++LRSG ++++ + D PKT Sbjct: 6 LRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTT 65 Query: 9002 FIKRYGHYLFLVIFIVLT 9055 + RYG + F V+ LT Sbjct: 66 CVTRYGSFEFRVMPFGLT 83 >gb|AAF02805.1|AC009400_1 (AC009400) hypothetical protein, 3' partial [Arabidopsis thaliana] Length = 543 Score = 108 bits (267), Expect(2) = 1e-022 Identities = 75/199 (37%), Positives = 100/199 (49%), Gaps = 3/199 (1%) Frame = +3 Query: 59262 LHKMRDLCPLYHVDGKPVDNYLEKKVEIV*NELLEKANRVKQESTHV---VSLEEALETF 59432 L+K+RD CPLY VDGKPVD ++ KVE+ N+LL+KA++++Q V VSL ALETF Sbjct: 315 LYKVRDKCPLYRVDGKPVDPDVDIKVEVAFNQLLDKASKLRQLMGDVSMDVSLGAALETF 374 Query: 59433 *KEFGVAMNVKEMNFXXXXXXXXXXXXAGLIXXXXXXXXXXXXPYDNGRG*LLLARWKWR 59612 + G + +EM AGL+ PYD G L R Sbjct: 375 RQVSGNDVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGR 434 Query: 59613 VSSCPN*KCAFYF*KNYTCH*L**K*FEGD*WRPII*GRCDISTFPLRVLKNGAIRFIPV 59792 + + K + + G + T PL VLKNG+I+F+P Sbjct: 435 LVQALAENVPILYEKTVQTIRYGSNGVKVTAGNQVYEGDMVLCTVPLGVLKNGSIKFVPE 494 Query: 59793 FPQQKLDTIKKLGIGLLNKVAM 59858 PQ+KLD IK+LG GLLNKVAM Sbjct: 495 LPQRKLDCIKRLGFGLLNKVAM 516 Score = 92.8 bits (227), Expect(2) = 3e-033 Identities = 55/126 (43%), Positives = 68/126 (53%) Frame = -1 Query: 45311 NMSISVMKDCFGDVIPKWCSGLLDYAYNYFLLYEYINFTVELATKSRIPTKPSVSRVIFI 45132 N+S V K+ F + IPK CS LLD AYNY + + YINF + A K + P + S S VI + Sbjct: 183 NISSWVTKEMFLNSIPKHCSSLLDSAYNYLVTHGYINFGIAQAIKDKFPAQSSKSSVIIV 242 Query: 45131 GTSLVGLVAARQLMLFEFEVIVLERLKSASGRFYT*KDGRRKQGGSY*FRKECFDR*TRN 44952 G L GL AARQLM F F+V VLE K GR YT K + G + N Sbjct: 243 GAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGN 302 Query: 44951 PPGLFA 44934 P G+ A Sbjct: 303 PLGIIA 308 Score = 82.7 bits (201), Expect = 4e-013 Identities = 74/170 (43%), Positives = 101/170 (58%), Gaps = 35/170 (20%) Frame = -2 Query: 45037 GSIHKKMVGGNKV-EVIDLGRSVLTGKLGTHLVCLRRRLSYTLHKV*DHRPLYRTN*NHV 44861 G ++ K + N+V DLG SVLTG LG L + R+L +L+KV D PLYR + V Sbjct: 273 GRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGKPV 332 Query: 44860 D*YFDKTVMVAYS*LLEKASKVRQ---ELSLVVSL----------------REKISLFSF 44738 D D V VA++ LL+KASK+RQ ++S+ VSL E++ LF++ Sbjct: 333 DPDVDIKVEVAFNQLLDKASKLRQLMGDVSMDVSLGAALETFRQVSGNDVATEEMGLFNW 392 Query: 44737 HLKILEYANAGLTH---------------AGTNMSL*YGRGSLLIAQWKRNISSCAMWLL 44603 HL LEYANAGL G + L G G L+ A N+ +L Sbjct: 393 HLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQA-LAENVP-----IL 446 Query: 44602 FLKNV*AICYSRDSVKVIIGCQLLE 44528 + K V I Y + VKV G Q+ E Sbjct: 447 YEKTVQTIRYGSNGVKVTAGNQVYE 471 Score = 78.0 bits (189), Expect(2) = 3e-033 Identities = 58/147 (39%), Positives = 80/147 (53%), Gaps = 6/147 (4%) Frame = -3 Query: 45762 PNSNLSSIPNKFYPIFI----PIERRQGRTDNKKALDQVSGGFLSNINEQQSALVCYFIK 45595 PNS +SI N + + P +RR+GR+ +S++N V Sbjct: 38 PNSISTSISNPSFEQMVSFSAPKKRRRGRSQRS----------MSSLNSLPVPNVGLLPG 87 Query: 45594 *S**NMSENSNFANRNVDYNVPRSKDSIKGV--LSGEIIYLNKMPTSETFVALMDGFPSH 45421 S S S+ NV+ V S ++K + EII +NK T+E +AL GFP+ Sbjct: 88 NSNFVSSSASSSGRFNVEV-VNGSNQTVKSYPGIGDEIITINKEATTEALLALTAGFPAD 146 Query: 45420 SLKDEEIEVGLVSVIGGIEQCNYILIRNHIIKK 45322 SL +EEIE G+V ++GGIEQ NYILIRNHII K Sbjct: 147 SLTEEEIEFGVVPIVGGIEQVNYILIRNHIISK 179 Score = 64.0 bits (153), Expect = 2e-007 Identities = 29/57 (50%), Positives = 37/57 (64%) Frame = +1 Query: 59563 PMIMEGDDYFLPGGNGGLVHALTKNVPSIFEKIIHATSYNRNSLKVINGGQLFEGDV 59733 P M GD FLPGGNG LV AL +NVP ++EK + Y N +KV G Q++EGD+ Sbjct: 418 PYDMGGDHCFLPGGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVTAGNQVYEGDM 474 Score = 63.2 bits (151), Expect = 3e-007 Identities = 47/111 (42%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Frame = -3 Query: 44676 YDMGGDHFLLPSGNET*AHALCGYYF*KMFRPFVIVGIV*R*LSGVNYLRRYGNVQHSSR 44497 YDMGGDH LP GN AL P + V G N ++ Q Sbjct: 419 YDMGGDHCFLPGGNGRLVQALAENV------PILYEKTVQTIRYGSNGVKVTAGNQVYEG 472 Query: 44496 CFLKC----------SI*FIP*FPQQKLDT*N*ILGFGLLN*VTMLFLYVFWNSNIDIFG 44347 + C SI F+P PQ+KLD LGFGLLN V MLF YVFW++++D FG Sbjct: 473 DMVLCTVPLGVLKNGSIKFVPELPQRKLDCIK-RLGFGLLNKVAMLFPYVFWSTDLDTFG 531 Query: 44346 H 44344 H Sbjct: 532 H 532 Score = 27.0 bits (58), Expect(2) = 1e-022 Identities = 14/24 (58%), Positives = 15/24 (62%) Frame = +1 Query: 59152 KKYEAKQ*GGNCYLGGSVLKSTLG 59223 KK EA + G LGGSVL TLG Sbjct: 278 KKMEANRVGAAADLGGSVLTGTLG 301 >gb|AAD11615.1| (AF049110) prpol [Zea mays] Length = 1317 Score = 149 bits (372), Expect = 4e-033 Identities = 110/405 (27%), Positives = 189/405 (46%), Gaps = 13/405 (3%) Frame = -2 Query: 51700 IDVLLDTQPIFIPPY----RMAPAELKELKEQLRDLLEKGFIRPSTSP-WGAPVLFVRKK 51536 I+ L+ P F P +M+ + + + +++ LL G IR P W A + V+K Sbjct: 300 IEHSLNVDPSFRPRKQRLRKMSDDKAEGARNEVKRLLSAGVIREVKYPEWLANTVMVKKA 359 Query: 51535 DGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIP 51356 +G +M I++ LNK K+ +PLPRID L D ++ S +D S YH++ ++ D P Sbjct: 360 NGKWRMCIDFTDLNKACPKDEFPLPRIDSLVDATASSELMSLLDCYSGYHQIWMKREDEP 419 Query: 51355 KTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEH 51176 KT+F T G Y + + G+ NA F + +V + + V+ +VDDI+V S +E H Sbjct: 420 KTSFITPSGTYCYLRMPEGLKNAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENH 479 Query: 51175 ADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT 50996 L+ + L KC F + FLG ++ GI + KIEA+ PTT Sbjct: 480 IADLQETFASFRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAILRMEPPTT 539 Query: 50995 PTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPF 50816 + RF+ + A + P + + A F W +++F LK L Sbjct: 540 KKGAQRLTGRLASLNRFISRSAERNLPFFEVLKSAEVFQWGPIQQKAFEELKQYLIDLTA 599 Query: 50815 LNLPEGPDGYVIYCDTSGVGLGCVLMQH---GKV-----IAYASRQLRKHENNYPTHDLK 50660 L P ++Y S + L+Q G+ + + S L + NY + Sbjct: 600 LTPPMPGAPLLLYVAASHSAVSAALVQEKLDGQTRKQVPVYFVSEVLSISKKNYTELEKV 659 Query: 50659 LEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILY 50486 L +V+ A + RHY +++ I + L+ I + +E R +W L ++ ++ ++ Sbjct: 660 LYVVLMASRKLRHYFQAYNI-IVPSSQPLKDIMRNREATGRIGKWAAELNEFCIEYVH 716 Score = 87.8 bits (214), Expect = 1e-014 Identities = 60/230 (26%), Positives = 109/230 (47%), Gaps = 2/230 (0%) Frame = -3 Query: 50142 QVMGEEHSACYSINPGSTKMYHDL-RCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGG 49966 ++M E H+ + GS + + R ++W D AE V +C CQ + ++ Sbjct: 966 ELMKEIHAGLCGSHIGSRPLLGKIFRQGFYWPKAASDAAELVQKCEGCQKCARDQKQPSS 1025 Query: 49965 LLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVR 49786 L Q I+ P W + +D + LP Q + V ++ +K P+ T SA + Sbjct: 1026 LTQLIQ-PIWPLQRWGLDLLGPLPPAQGNLRYVVVAVEYFSKWIEAKPLATITSAT-VQK 1083 Query: 49785 LYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQT 49606 + + IV GVP +I D G QF + +R F +GT+++ ++ HP+++G ER Sbjct: 1084 FFWQNIVCRFGVPKAITVDNGTQFDSEAFRDFCDQIGTKIHFASVRHPESNGLVERANGI 1143 Query: 49605 LEDMLRASIIDF-KGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 + + SI + +G W D L + +++N S P++ L+G + +P Sbjct: 1144 IMTGIMKSIFNQPRGKWPDQLTKVVWSHNTTTSRSTGFTPFKLLFGDEAITP 1195 Score = 47.3 bits (110), Expect(2) = 2e-006 Identities = 25/85 (29%), Positives = 40/85 (46%) Frame = +2 Query: 8780 WGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGC 8959 W A + ++K R+CID+ N K ++PL RI ++ SG Sbjct: 349 WLANTVMVKKANGKWRMCIDFTDLNKACPKDEFPLPRIDSLVDATASSELMSLLDCYSGY 408 Query: 8960 HKMKVRECDVPKTNFIKRYGHYLFL 9034 H++ ++ D PKT+FI G Y +L Sbjct: 409 HQIWMKREDEPKTSFITPSGTYCYL 433 Score = 33.2 bits (74), Expect(2) = 2e-006 Identities = 29/120 (24%), Positives = 49/120 (40%) Frame = +1 Query: 9151 SWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY* 9330 S +E+H +DL+ + R + K F +K FLG ++S +GI + KIE+ Sbjct: 473 STKQENHIADLQETFASFRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPSKIEAIL 532 Query: 9331 SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 P K RF+ R + + P ++ + FQ + F EL + Sbjct: 533 RMEPPTTKKGAQRLTGRLASLNRFISRSAERNLPFFEVLKSAEVFQWGPIQQKAFEELKQ 592 >gb|AAF04184.1|AC011560_25 (AC011560) hypothetical protein; 118064-115538 [Arabidopsis thaliana] Length = 789 Score = 108 bits (267), Expect(2) = 1e-022 Identities = 75/199 (37%), Positives = 100/199 (49%), Gaps = 3/199 (1%) Frame = +3 Query: 59262 LHKMRDLCPLYHVDGKPVDNYLEKKVEIV*NELLEKANRVKQESTHV---VSLEEALETF 59432 L+K+RD CPLY VDGKPVD ++ KVE+ N+LL+KA++++Q V VSL ALETF Sbjct: 263 LYKVRDKCPLYRVDGKPVDPDVDIKVEVAFNQLLDKASKLRQLMGDVSMDVSLGAALETF 322 Query: 59433 *KEFGVAMNVKEMNFXXXXXXXXXXXXAGLIXXXXXXXXXXXXPYDNGRG*LLLARWKWR 59612 + G + +EM AGL+ PYD G L R Sbjct: 323 RQVSGNDVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGR 382 Query: 59613 VSSCPN*KCAFYF*KNYTCH*L**K*FEGD*WRPII*GRCDISTFPLRVLKNGAIRFIPV 59792 + + K + + G + T PL VLKNG+I+F+P Sbjct: 383 LVQALAENVPILYEKTVQTIRYGSNGVKVTAGNQVYEGDMVLCTVPLGVLKNGSIKFVPE 442 Query: 59793 FPQQKLDTIKKLGIGLLNKVAM 59858 PQ+KLD IK+LG GLLNKVAM Sbjct: 443 LPQRKLDCIKRLGFGLLNKVAM 464 Score = 92.8 bits (227), Expect(2) = 7e-033 Identities = 55/126 (43%), Positives = 68/126 (53%) Frame = -1 Query: 45311 NMSISVMKDCFGDVIPKWCSGLLDYAYNYFLLYEYINFTVELATKSRIPTKPSVSRVIFI 45132 N+S V K+ F + IPK CS LLD AYNY + + YINF + A K + P + S S VI + Sbjct: 131 NISSWVTKEMFLNSIPKHCSSLLDSAYNYLVTHGYINFGIAQAIKDKFPAQSSKSSVIIV 190 Query: 45131 GTSLVGLVAARQLMLFEFEVIVLERLKSASGRFYT*KDGRRKQGGSY*FRKECFDR*TRN 44952 G L GL AARQLM F F+V VLE K GR YT K + G + N Sbjct: 191 GAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGN 250 Query: 44951 PPGLFA 44934 P G+ A Sbjct: 251 PLGIIA 256 Score = 82.7 bits (201), Expect = 4e-013 Identities = 74/170 (43%), Positives = 101/170 (58%), Gaps = 35/170 (20%) Frame = -2 Query: 45037 GSIHKKMVGGNKV-EVIDLGRSVLTGKLGTHLVCLRRRLSYTLHKV*DHRPLYRTN*NHV 44861 G ++ K + N+V DLG SVLTG LG L + R+L +L+KV D PLYR + V Sbjct: 221 GRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGKPV 280 Query: 44860 D*YFDKTVMVAYS*LLEKASKVRQ---ELSLVVSL----------------REKISLFSF 44738 D D V VA++ LL+KASK+RQ ++S+ VSL E++ LF++ Sbjct: 281 DPDVDIKVEVAFNQLLDKASKLRQLMGDVSMDVSLGAALETFRQVSGNDVATEEMGLFNW 340 Query: 44737 HLKILEYANAGLTH---------------AGTNMSL*YGRGSLLIAQWKRNISSCAMWLL 44603 HL LEYANAGL G + L G G L+ A N+ +L Sbjct: 341 HLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQA-LAENVP-----IL 394 Query: 44602 FLKNV*AICYSRDSVKVIIGCQLLE 44528 + K V I Y + VKV G Q+ E Sbjct: 395 YEKTVQTIRYGSNGVKVTAGNQVYE 419 Score = 76.9 bits (186), Expect(2) = 7e-033 Identities = 43/83 (51%), Positives = 57/83 (67%), Gaps = 9/83 (10%) Frame = -3 Query: 45570 NSNFANRNVDYN-------VPRSKDSIKGV--LSGEIIYLNKMPTSETFVALMDGFPSHS 45418 NSNF + + + V S ++K + EII +NK T+E +AL GFP+ S Sbjct: 36 NSNFVSSSASSSGRFNVEVVNGSNQTVKSYPGIGDEIITINKEATTEALLALTAGFPADS 95 Query: 45417 LKDEEIEVGLVSVIGGIEQCNYILIRNHIIKK 45322 L +EEIE G+V ++GGIEQ NYILIRNHII K Sbjct: 96 LTEEEIEFGVVPIVGGIEQVNYILIRNHIISK 127 Score = 64.0 bits (153), Expect = 2e-007 Identities = 29/57 (50%), Positives = 37/57 (64%) Frame = +1 Query: 59563 PMIMEGDDYFLPGGNGGLVHALTKNVPSIFEKIIHATSYNRNSLKVINGGQLFEGDV 59733 P M GD FLPGGNG LV AL +NVP ++EK + Y N +KV G Q++EGD+ Sbjct: 366 PYDMGGDHCFLPGGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVTAGNQVYEGDM 422 Score = 63.2 bits (151), Expect = 3e-007 Identities = 47/111 (42%), Positives = 57/111 (51%), Gaps = 10/111 (9%) Frame = -3 Query: 44676 YDMGGDHFLLPSGNET*AHALCGYYF*KMFRPFVIVGIV*R*LSGVNYLRRYGNVQHSSR 44497 YDMGGDH LP GN AL P + V G N ++ Q Sbjct: 367 YDMGGDHCFLPGGNGRLVQALAENV------PILYEKTVQTIRYGSNGVKVTAGNQVYEG 420 Query: 44496 CFLKC----------SI*FIP*FPQQKLDT*N*ILGFGLLN*VTMLFLYVFWNSNIDIFG 44347 + C SI F+P PQ+KLD LGFGLLN V MLF YVFW++++D FG Sbjct: 421 DMVLCTVPLGVLKNGSIKFVPELPQRKLDCIK-RLGFGLLNKVAMLFPYVFWSTDLDTFG 479 Query: 44346 H 44344 H Sbjct: 480 H 480 Score = 27.0 bits (58), Expect(2) = 1e-022 Identities = 14/24 (58%), Positives = 15/24 (62%) Frame = +1 Query: 59152 KKYEAKQ*GGNCYLGGSVLKSTLG 59223 KK EA + G LGGSVL TLG Sbjct: 226 KKMEANRVGAAADLGGSVLTGTLG 249 >emb|CAA28360.1| (X04658) pot. ORF 5 (AA 1-659) [Carnation etched ring virus] Length = 659 Score = 145 bits (362), Expect = 6e-032 Identities = 115/423 (27%), Positives = 193/423 (45%), Gaps = 14/423 (3%) Frame = -2 Query: 51703 TIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVR----KK 51536 TI+++ + + P +P++ +E Q+++LLE I+PS S +P V ++ Sbjct: 219 TIELIDPKTVVKVKPMSYSPSDREEFDRQIKELLELKVIKPSKSTHMSPAFLVENEAERR 278 Query: 51535 DGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIP 51356 G +M + YK +NK T + + LP D+L ++G K +S D +S +V + + Sbjct: 279 RGKKRMVVNYKAMNKATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQL 338 Query: 51355 KTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRS-EEE 51179 TAF GHY + V+ FG+ A ++F + V+VDDILV+S + +E Sbjct: 339 LTAFTCPQGHYQWNVVPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKE 398 Query: 51178 HADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAV-KTWTRP 51002 H H+ +LR + + K + + + FLG I +E + K R Sbjct: 399 HYIHVLNILRRCEKLGIILSKKKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRI 458 Query: 51001 TTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIA 50822 +++ FL + Y ++ K A I PL ++ + + W + + +K L Sbjct: 459 EDKKQLQRFLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSF 518 Query: 50821 PFLNLPEGPDGYVIYCDTSGVGLGCVLM----QHGKVIAYASRQLRKHENNYPTHDLKLE 50654 P L PE D VI D S G +L H + YAS + E NY +++ +L Sbjct: 519 PKLYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELL 578 Query: 50653 IVVHALKIWRHYLYGFHVDIYTDHKSLQYI----FKQKELYLRQRRWLELLKDYDVDILY 50486 V+ +K + YL I TD+K+ + K R RW L YD D+ + Sbjct: 579 AVIRVIKKFSIYLTPSRFLIRTDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQYDFDVEH 638 Query: 50485 HLGKANVVVDALSRKSM 50435 G NV D L ++ Sbjct: 639 IAGTKNVFADFLQENTL 655 >gb|AAF63114.1|AC006423_15 (AC006423) Hypothetical protein [Arabidopsis thaliana] Length = 640 Score = 143 bits (358), Expect = 2e-031 Identities = 85/227 (37%), Positives = 126/227 (55%), Gaps = 4/227 (1%) Frame = -2 Query: 51079 LGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLT 50900 LGH I GI VD KI+ + T ++RSFL A +YRRF++ F+ I+ PL RL Sbjct: 174 LGHKISGKGIEVDKAKIDVMVRLQPLKTVKDIRSFLGHAGFYRRFIKDFSKIARPLTRLL 233 Query: 50899 QKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQH---- 50732 K A+F + C ++F +K+ L +AP + P + I CD S +G VL Q Sbjct: 234 CKEAEFDFDEDCLKAFHSIKEALVLAPIVQAPNWNHPFEIMCDASDYAVGAVLGQRIDKK 293 Query: 50731 GKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQK 50552 VI YASR L ++ Y T + +L +VV A + +R YL G V +YTDH +L++I+ +K Sbjct: 294 LHVIYYASRTLDDTQSRYATTEKELLVVVFAFEKFRSYLVGSKVTVYTDHAALKHIYAKK 353 Query: 50551 ELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEMRE 50399 + R RW+ L+++D++I+ G N V D LSR M + M E Sbjct: 354 DTKPRLLRWILFLQEFDMEIVDKRGSENGVADHLSRMRMTEAVPIDDSMPE 404 Score = 62.5 bits (149), Expect = 6e-007 Identities = 38/107 (35%), Positives = 52/107 (48%) Frame = +1 Query: 9262 VFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTK 9441 + LGH ISG+GI VDK KI+ K+I SFL A +YRRF+ FS I+ PLT+ Sbjct: 172 IVLGHKISGKGIEVDKAKIDVMVRLQPLKTVKDIRSFLGHAGFYRRFIKDFSKIARPLTR 231 Query: 9442 IT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 + + +F E C F + + H F + C AS Sbjct: 232 LLCKEAEFDFDEDCLKAFHSIKEALVLAPIVQAPNWNHPFEIMCDAS 278 >emb|CAA05264.1| (AJ002234) polyprotein, cleavage products include viral coat protein and proteins with homology to an aspartic protease, reverse transcriptase and RNase H [banana streak virus] Length = 1832 Score = 141 bits (353), Expect = 7e-031 Identities = 134/484 (27%), Positives = 237/484 (48%), Gaps = 32/484 (6%) Frame = -2 Query: 51697 DVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFV--------- 51545 D++++ +P+ + P + + + ++ LLE IRPS+S + V Sbjct: 1233 DMIIEDRPL----KHVTPTMKETMAKHVQKLLELKVIRPSSSKHRTTAMIVESGTEVDPM 1288 Query: 51544 --RKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVR 51371 +++ G ++ YK+LN T K++Y LP I+ + ++ AK +SK DL+S +H+V + Sbjct: 1289 TGKERRGKERLVFNYKRLNDNTEKDQYSLPGINTIIKRIGNAKIYSKFDLKSGFHQVAMD 1348 Query: 51370 EADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSR 51191 IP TAFW G Y++ V+ FG+ NA A+F M+ F+ D F+ V++DDILV+S Sbjct: 1349 PESIPWTAFWAIDGLYEWLVMPFGLKNAPAIFQRKMDNCFRGTED-FIAVYIDDILVFSE 1407 Query: 51190 SEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTW 51011 + +H +HL+ + + + L +K + + FLG IG I++ I+ + Sbjct: 1408 TIHQHKEHLKKFMTICEKNGLVLSPTKMKIGTRQIDFLGATIGNSKIKLQPHIIKKIIEM 1467 Query: 51010 TRPTTP--TEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKD 50837 +R +L + Y R ++ K I PL T + + +K+ Sbjct: 1468 KDEELKEVKGLRKWLGILNYARSYIPKLGKILGPLYAKTSPNGERRMNTQDWKIVKEVKE 1527 Query: 50836 KLTIAPFLNLPEGPDGYVIYCDTSGV--GLGCVL---------MQHGKVIAYASRQLRKH 50690 + P L LP P+ ++ +T G G G V K+ AYAS + Sbjct: 1528 VVANLPELELP--PEKAIMIIETDGCMEGWGGVCKWKTDSLQPRWSEKICAYASGKFTPI 1585 Query: 50689 ENNYPTHDLKLEIVVHAL-KIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQR-RWLEL 50516 ++ T D +++ V+++L K +YL + I TD +++ +K+ + R RWL Sbjct: 1586 KS---TIDAEIQAVINSLDKFKIYYLDKKELIIRTDSQAIVSFYKKSSDHKPSRVRWL-A 1641 Query: 50515 LKDY------DVDILYHLGKANVVVDALSRKSMGSLTDVQPEMREMVRDIQRLSSLGVCL 50354 DY ++ + GK NV+ D LSR + +++ ++ S GV + Sbjct: 1642 FTDYITGTGLEIKFEHIDGKDNVLADTLSR------------LVKIILHPEKHQSEGVLI 1689 Query: 50353 ANSEDSGVSI*EVAKSSIIDEVKRHQYKDPILAQYR 50246 E+ AK + D VKR Y+D + YR Sbjct: 1690 NAVEEVFHKGNTDAKQRVNDVVKR--YEDWLSKGYR 1723 >gb|AAD19758.1| (AC006413) putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis thaliana] Length = 587 Score = 136 bits (338), Expect = 4e-029 Identities = 57/113 (50%), Positives = 89/113 (78%) Frame = -2 Query: 51505 KQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGH 51326 K +NK+T+K R+P+P++DD+ D+L G+K FSKIDLRS YH++R+R D KT F ++ G Sbjct: 401 KAINKITIKYRFPIPQLDDMLDELSGSKVFSKIDLRSGYHQIRIRPGDEWKTDFKSKDGL 460 Query: 51325 YDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADH 51167 Y+++V+ FGM+NA + FM LMN++ +PF FV+V+ DDIL+YS+++EE+ +H Sbjct: 461 YEWQVMPFGMSNAPSTFMRLMNQILRPFTGSFVVVYFDDILIYSKTKEEYLEH 513 Score = 55.4 bits (131), Expect = 7e-005 Identities = 29/71 (40%), Positives = 42/71 (58%) Frame = -2 Query: 50896 KAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIA 50717 K KF W E+SF L+K+KL AP L LP+ + + CD SGVG+G VL Q + +A Sbjct: 516 KKGKFHWGIEQEKSFDLIKEKLCTAPVLALPDFDKVFQVKCDASGVGVGAVLSQEKRPVA 575 Query: 50716 YASRQLRKHEN 50684 S +L + ++ Sbjct: 576 LFSEKLSEAQH 586 Score = 35.2 bits (79), Expect(2) = 0.086 Identities = 18/63 (28%), Positives = 33/63 (51%) Frame = +2 Query: 8852 NNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLF 9031 N +T K ++P+ ++ I+LRSG H++++R D KT+F + G Y + Sbjct: 404 NKITIKYRFPIPQLDDMLDELSGSKVFSKIDLRSGYHQIRIRPGDEWKTDFKSKDGLYEW 463 Query: 9032 LVI 9040 V+ Sbjct: 464 QVM 466 Score = 29.0 bits (63), Expect(2) = 0.086 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDH 9171 AP+ FM LM+++ +PF F YS KE++ Sbjct: 473 APSTFMRLMNQILRPFTGSFVVVYFDDILIYSKTKEEY 510 >gb|AAD28680.1|AC007187_4 (AC007187) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 301 Score = 132 bits (329), Expect = 4e-028 Identities = 83/236 (35%), Positives = 129/236 (54%), Gaps = 5/236 (2%) Frame = -2 Query: 51079 LGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLT 50900 LGH I G++V+ K++ + P T ++RSFL A +YRRF++ F+ ++ PL RL Sbjct: 8 LGHKISKKGVQVNKAKVDVMMQLQPPKTGKDIRSFLGHAGFYRRFIKDFSKLARPLTRLL 67 Query: 50899 QKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQ----H 50732 K A+F + C +F K+ L AP + P + I CD S +G VL Q Sbjct: 68 CKEAEFIFEEECLTAFKSTKEALVSAPIVQAPNRDYPFEIMCDDSDYAVGAVLGQKIDRK 127 Query: 50731 GKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQK 50552 VI YAS + + Y T + +L VV A + +R YL G V +YTDH +L++I+ +K Sbjct: 128 LHVIYYASGTMDDTQVRYATTEKELLAVVFAFEKFRSYLVGSKVTVYTDHAALRHIYAKK 187 Query: 50551 ELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSMGSLTDVQPEM-REMVRDIQRL 50375 + R RW+ LL+++D++I+ G N V D LSR + + M E + IQ+L Sbjct: 188 DTKPRLLRWILLLQEFDMEIVDKKGIENGVADHLSRMRIEDEVPIDDSMPEEQLMAIQQL 247 Query: 50374 S 50372 + Sbjct: 248 N 248 Score = 54.7 bits (129), Expect = 1e-004 Identities = 32/107 (29%), Positives = 52/107 (47%) Frame = +1 Query: 9262 VFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTK 9441 + LGH IS +G++V+K K++ P K+I SFL A +YRRF+ FS ++ PLT+ Sbjct: 6 IVLGHKISKKGVQVNKAKVDVMMQLQPPKTGKDIRSFLGHAGFYRRFIKDFSKLARPLTR 65 Query: 9442 IT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHAS 9582 + + +F E C F+ + + F + C S Sbjct: 66 LLCKEAEFIFEEECLTAFKSTKEALVSAPIVQAPNRDYPFEIMCDDS 112 >emb|CAB53471.1| (AJ243733) polymerase polyprotein [Lampetra fluviatilis] Length = 429 Score = 132 bits (328), Expect = 6e-028 Identities = 68/184 (36%), Positives = 110/184 (58%) Frame = -2 Query: 51805 AEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKEL 51626 A+ L+ +L+ EF DVF + I+ D P+ + P+R++P E + + Sbjct: 238 AQLGALRELLI--EFSDVFSKHKYDIGCTDLMHHHIETG-DAAPVRLNPFRLSPVEKEHV 294 Query: 51625 KEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDL 51446 + + D+LE I PS+SPWGAP++ V+K+DGSL+ +++++LNK++V + YPLPR+D+ Sbjct: 295 QSAVNDMLEADIISPSSSPWGAPIVLVKKQDGSLRFCVDFRRLNKISVADAYPLPRMDES 354 Query: 51445 FDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDL 51266 D L GA+ FS +DL S + ++ + E PKTAF T G + F L G+ ++ A F L Sbjct: 355 LDALSGARYFSTLDLLSGFWQLPLDEESKPKTAFRTPGGLFQFNRLPMGLHSSPATFQRL 414 Query: 51265 MNRV 51254 M V Sbjct: 415 MELV 418 Score = 50.0 bits (117), Expect = 0.003 Identities = 27/97 (27%), Positives = 46/97 (46%) Frame = +2 Query: 8741 MFDKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXX 8920 M + I + SPWGA ++ ++K+ LR C+D+ + N ++ YPL R+ Sbjct: 301 MLEADIISPSSSPWGAPIVLVKKQDGSLRFCVDFRRLNKISVADAYPLPRMDESLDALSG 360 Query: 8921 XXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLF 9031 ++L SG ++ + E PKT F G + F Sbjct: 361 ARYFSTLDLLSGFWQLPLDEESKPKTAFRTPGGLFQF 397 >gb|AAD48069.1|AF160181_1 (AF160181) contains similarity to Pfam family PF00078 -943 Reverse transcriptase (RNA-dependent DNA polymerase); score 65.8, E=9.4e-16, N=1; may be a pseudogene [Arabidopsis thaliana] Length = 630 Score = 131 bits (326), Expect = 1e-027 Identities = 89/290 (30%), Positives = 133/290 (45%), Gaps = 4/290 (1%) Frame = -2 Query: 51526 LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTA 51347 L+M I+Y+ LN + + +PLP D + ++L + +D S + ++ + D KT Sbjct: 355 LRMCIDYRNLNAASRNDHFPLPFTDQMLERLANHPYYCFLDGYSGFFQIPIHPNDHEKTT 414 Query: 51346 FWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADH 51167 F YG + + + FG+ NA A F M +F ++ V VF+DD VY S + Sbjct: 415 FTCPYGTFAYERMPFGLCNAPATFQRCMTSIFSDIIEEMVEVFMDDFSVYGPSFSSCLLN 474 Query: 51166 LRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTE 50987 L VL + L + KC F + LGH I GI VD Sbjct: 475 LGRVLTRCEETNLVLNWEKCHFMVKEGIMLGHKISEKGIEVDK----------------- 517 Query: 50986 VRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNL 50807 FL A +YRRF++ F+ I+ PL RL K +F + C +SF +K+ L AP + Sbjct: 518 -GCFLGHAGFYRRFIKDFSKIARPLTRLLCKETEFEFDEDCPKSFHTIKEALVSAPVVRA 576 Query: 50806 PEGPDGYVIYCDTSGVGLGCVLMQ----HGKVIAYASRQLRKHENNYPTHDLKL 50657 + I CD +G VL Q VI YASR L + + Y T + +L Sbjct: 577 TNWDYPFEIMCDALDYAVGAVLGQKIDKKLHVIYYASRTLDEAQGRYATTEKEL 630 Score = 54.7 bits (129), Expect(2) = 2e-006 Identities = 43/174 (24%), Positives = 65/174 (36%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M +F ++ Y + +L VL + + K Sbjct: 434 APATFQRCMTSIFSDIIEEMVEVFMDDFSVYGPSFSSCLLNLGRVLTRCEETNLVLNWEK 493 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F +K + LGH IS +GI VDK FL A +YRRF+ FS Sbjct: 494 CHFMVKEGIMLGHKISEKGIEVDKG------------------CFLGHAGFYRRFIKDFS 535 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHA 9579 I+ PLT++ + +F+ E C F + + + F + C A Sbjct: 536 KIARPLTRLLCKETEFEFDEDCPKSFHTIKEALVSAPVVRATNWDYPFEIMCDA 589 Score = 25.4 bits (54), Expect(2) = 2e-006 Identities = 17/70 (24%), Positives = 27/70 (38%) Frame = +2 Query: 8822 LRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTN 9001 LR+CIDY N + +PL ++ SG ++ + D KT Sbjct: 355 LRMCIDYRNLNAASRNDHFPLPFTDQMLERLANHPYYCFLDGYSGFFQIPIHPNDHEKTT 414 Query: 9002 FIKRYGHYLF 9031 F YG + + Sbjct: 415 FTCPYGTFAY 424 >emb|CAB81130.1| (AL161506) contains similarity to Pfam family PF00078 -943 Reverse transcriptase (RNA-dependent DNA polymerase), score 65.8, E=9.4e-16, N=1, may be a pseudogene~similarity to~Contains Prokaryotic membrane lipoprotein lipid attachment site AA461-471 [Arabidopsis thaliana] Length = 630 Score = 131 bits (326), Expect = 1e-027 Identities = 89/290 (30%), Positives = 133/290 (45%), Gaps = 4/290 (1%) Frame = -2 Query: 51526 LQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTA 51347 L+M I+Y+ LN + + +PLP D + ++L + +D S + ++ + D KT Sbjct: 355 LRMCIDYRNLNAASRNDHFPLPFTDQMLERLANHPYYCFLDGYSGFFQIPIHPNDHEKTT 414 Query: 51346 FWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADH 51167 F YG + + + FG+ NA A F M +F ++ V VF+DD VY S + Sbjct: 415 FTCPYGTFAYERMPFGLCNAPATFQRCMTSIFSDIIEEMVEVFMDDFSVYGPSFSSCLLN 474 Query: 51166 LRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTE 50987 L VL + L + KC F + LGH I GI VD Sbjct: 475 LGRVLTRCEETNLVLNWEKCHFMVKEGIMLGHKISEKGIEVDK----------------- 517 Query: 50986 VRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNL 50807 FL A +YRRF++ F+ I+ PL RL K +F + C +SF +K+ L AP + Sbjct: 518 -GCFLGHAGFYRRFIKDFSKIARPLTRLLCKETEFEFDEDCPKSFHTIKEALVSAPVVRA 576 Query: 50806 PEGPDGYVIYCDTSGVGLGCVLMQ----HGKVIAYASRQLRKHENNYPTHDLKL 50657 + I CD +G VL Q VI YASR L + + Y T + +L Sbjct: 577 TNWDYPFEIMCDALDYAVGAVLGQKIDKKLHVIYYASRTLDEAQGRYATTEKEL 630 Score = 54.7 bits (129), Expect(2) = 2e-006 Identities = 43/174 (24%), Positives = 65/174 (36%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 APA F M +F ++ Y + +L VL + + K Sbjct: 434 APATFQRCMTSIFSDIIEEMVEVFMDDFSVYGPSFSSCLLNLGRVLTRCEETNLVLNWEK 493 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 F +K + LGH IS +GI VDK FL A +YRRF+ FS Sbjct: 494 CHFMVKEGIMLGHKISEKGIEVDKG------------------CFLGHAGFYRRFIKDFS 535 Query: 9418 SISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCHA 9579 I+ PLT++ + +F+ E C F + + + F + C A Sbjct: 536 KIARPLTRLLCKETEFEFDEDCPKSFHTIKEALVSAPVVRATNWDYPFEIMCDA 589 Score = 25.4 bits (54), Expect(2) = 2e-006 Identities = 17/70 (24%), Positives = 27/70 (38%) Frame = +2 Query: 8822 LRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTN 9001 LR+CIDY N + +PL ++ SG ++ + D KT Sbjct: 355 LRMCIDYRNLNAASRNDHFPLPFTDQMLERLANHPYYCFLDGYSGFFQIPIHPNDHEKTT 414 Query: 9002 FIKRYGHYLF 9031 F YG + + Sbjct: 415 FTCPYGTFAY 424 >gb|AAC60519.1| (S75260) pol [Drosophila buzzatii, BU-24, Peptide Transposon, 263 aa] Length = 263 Score = 130 bits (324), Expect = 2e-027 Identities = 75/237 (31%), Positives = 120/237 (49%), Gaps = 1/237 (0%) Frame = -2 Query: 51586 RPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKI 51407 R ST W VR G Q + YPLPR+ + DQL+ A+ + + Sbjct: 28 RKSTEEWTVGGKVVR---GGFQWRKRSRNATGSDPGGSYPLPRVHHILDQLREARYITSL 84 Query: 51406 DLRSSYHEVRVREADIPKTAFWTR-YGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMF 51230 DL+ Y ++ + ++ P TAF G ++V+ FG+ +A F +++V P + Sbjct: 85 DLKDGYWQIPMEKSSRPLTAFTVPGKGLLQWKVMPFGLHSAPVTFQRALDQVIGPDMMPH 144 Query: 51229 VIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGI 51050 ++DD +V R+ +EH D+LR + R L+ L KC+F+ L +LGH + DGI Sbjct: 145 AFAYLDDKIVIGRTRQEHMDNLREMFRRLRAANLRINIYKCDFFKKELIYLGHKVTEDGI 204 Query: 51049 RVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*W 50876 R D +K+ A+ PT E+R ++ +A +YRRFV FA+ PL L +K + W Sbjct: 205 RTDPEKVAAIAQLNPPTNVKELRQYVGVASWYRRFVPDFAITVHPLNALLKKGINWKW 262 Score = 56.2 bits (133), Expect = 4e-005 Identities = 33/129 (25%), Positives = 59/129 (45%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP F + +V P + +++H +LR + + LR + K Sbjct: 125 APVTFQRALDQVIGPDMMPHAFAYLDDKIVIGRTRQEHMDNLREMFRRLRAANLRINIYK 184 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFS 9417 +F K +++LGH ++ +GIR D EK+ + P K + ++ +A +YRRFV F+ Sbjct: 185 CDFFKKELIYLGHKVTEDGIRTDPEKVAAIAQLNPPTNVKELRQYVGVASWYRRFVPDFA 244 Query: 9418 SISSPLTKI 9444 PL + Sbjct: 245 ITVHPLNAL 253 >gb|AAD19756.1| (AC006413) putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis thaliana] Length = 280 Score = 129 bits (322), Expect = 3e-027 Identities = 63/136 (46%), Positives = 90/136 (65%) Frame = -3 Query: 49917 MDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSI 49738 MDF+ GLPRTQ DS++V++DR +K HF+ + T A + +L+ +E+VRLHGVP SI Sbjct: 1 MDFVLGLPRTQRGVDSVFVVVDRFSKMTHFIACKKTADASNIAKLFFKEVVRLHGVPKSI 60 Query: 49737 ISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSW 49558 SDR +F ++FW + + GT +N S+T H Q DG++E T +TL +M+R+ D W Sbjct: 61 TSDRDTKFLSHFWSTLWRMFGTALNRSSTPHTQIDGQTEVTNRTLGNMVRSICGDNPKQW 120 Query: 49557 DDHLPLIEFAYNNHYH 49510 D LP IEFAYN+ H Sbjct: 121 DLALPQIEFAYNSVVH 136 Score = 76.5 bits (185), Expect = 3e-011 Identities = 45/135 (33%), Positives = 73/135 (53%), Gaps = 1/135 (0%) Frame = +2 Query: 10403 MDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGFLVFI 10582 MDF+ ++R +S+FV+VDR +K +HF+ T A + AKL+ ++V RLHG I Sbjct: 1 MDFVLGLPRTQRGVDSVFVVVDRFSKMTHFIACKKTADASNIAKLFFKEVVRLHGVPKSI 60 Query: 10583 ISNRSAYFTAQLWKSFQKSQGSKLN*VLL-FILKEVEKQCTIKTLEYMLRACVIDFKVNW 10759 S+R F + W + + G+ LN + + + T +TL M+R+ D W Sbjct: 61 TSDRDTKFLSHFWSTLWRMFGTALNRSSTPHTQIDGQTEVTNRTLGNMVRSICGDNPKQW 120 Query: 10760 DDNMPLIEYSYNNSYH 10807 D +P IE++YN+ H Sbjct: 121 DLALPQIEFAYNSVVH 136 >gb|AAF08289.1|AF190123_3 (AF190123) polyprotein [tobacco vein-clearing virus] Length = 635 Score = 125 bits (312), Expect = 4e-026 Identities = 109/421 (25%), Positives = 197/421 (45%), Gaps = 19/421 (4%) Frame = -2 Query: 51700 IDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRK----KD 51533 I+++ + I P + +L E K ++DLL+ +I+ S S +P V K K Sbjct: 197 IELIEENSIITQKPLKYNFNDLTEFKIHIKDLLDNKYIQESNSKHTSPAFIVNKHSEQKR 256 Query: 51532 GSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPK 51353 G +M I+Y+ LN T YP+P Q+QG FSK D +S ++ +++ + Sbjct: 257 GKSRMVIDYRNLNAKTKTYNYPIPNKILKIRQIQGYNYFSKFDCKSGFYHLKLEDESKKL 316 Query: 51352 TAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHA 51173 TAF G Y++ VL FG NA + M+ F + IV++DDIL+YSR+++EH Sbjct: 317 TAFTVPQGFYEWNVLPFGYKNAPGRYQHFMDNYFNQLEN--CIVYIDDILLYSRTQDEHI 374 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRP-TT 50996 L ++++ + +K E + FLG I +GI++ T ++ + T Sbjct: 375 KLLEKFAHIIENSGISLSKTKAEIMKNQIEFLGIQIDKNGIKMQTHIVQKIINLDENIDT 434 Query: 50995 PTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPF 50816 +++SFL + R ++ K A PL + +K ++ + + +K P Sbjct: 435 KKKLQSFLGIVNQVREYIPKLAENLKPLQKKLKKDVEYSFDEKDKEQIKKIKILCKKLPK 494 Query: 50815 LNLPEGPD--GYVIYCDTSGVGLGCVL--------MQHGKVIAYASRQLRKHENNYPTHD 50666 L P+ Y++ D+S G VL ++H Y S + + + + Sbjct: 495 LYFPDENKKFTYIVETDSSNYSYGGVLKYRYNKEKIEHH--CRYYSGSYTEPQEKWEINR 552 Query: 50665 LKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQK---ELYLRQRRWLEL-LKDYDV 50498 +L + L + Y+ + TD+ +++ +K + ++ R L L + ++ Sbjct: 553 KELFALYKCLLAFEPYIVYTRFIVRTDNTQVKWWITRKVQDSVTTKEIRRLVLNILNFTF 612 Query: 50497 DILYHLGKANVVVDALSRKS 50438 I NVV D LSR+S Sbjct: 613 TIEIINTNKNVVADYLSRQS 632 >gb|AAF74287.1|AF261775_1 (AF261775) ORFX [Lycopersicon pennellii] Length = 163 Score = 123 bits (306), Expect = 2e-025 Identities = 80/175 (45%), Positives = 83/175 (46%), Gaps = 2/175 (1%) Frame = +2 Query: 21182 DDSTNCLVTSVCPCITFGQISEILNKGTPCKYIHIIFLEKFIF**SVTKNMMXXXXXXXX 21361 DD NCLVTSVCPCITFGQISEILNKGT Sbjct: 41 DDPANCLVTSVCPCITFGQISEILNKGT-------------------------------T 69 Query: 21362 XXXXXXXYVVCWD*TGLPSLYSYFYRSKMRGQCDLEEAPCADCLEH--CIL*TLCSYPRR 21535 TGLPSLYS FYRSKMRGQ DLEEAPC DCL H C LC R Sbjct: 70 SCGSRGALYCLLGLTGLPSLYSCFYRSKMRGQYDLEEAPCVDCLVHVFCEPCALCQEYRE 129 Query: 21536 QRA*EPWL*YGNR*FL*VYIPKKYLRNHITKIYINCVVGWQANMDRQSRGVTMPPYH 21706 + NR F + +GWQANMDRQSRGVTMPPYH Sbjct: 130 LK---------NRGF-------------------DMGIGWQANMDRQSRGVTMPPYH 158 Score = 47.6 bits (111), Expect(2) = 0.002 Identities = 21/25 (84%), Positives = 22/25 (88%) Frame = +3 Query: 21501 VFCEPCALIQEDRELKNLGFNMGIG 21575 VFCEPCAL QE RELKN GF+MGIG Sbjct: 116 VFCEPCALCQEYRELKNRGFDMGIG 140 Score = 22.3 bits (46), Expect(2) = 0.002 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 21361 ACASRGALCGLLGL 21402 +C SRGAL LLGL Sbjct: 70 SCGSRGALYCLLGL 83 >gb|AAF74286.1|AF261774_1 (AF261774) ORFX [Lycopersicon esculentum] Length = 163 Score = 123 bits (306), Expect = 2e-025 Identities = 80/175 (45%), Positives = 83/175 (46%), Gaps = 2/175 (1%) Frame = +2 Query: 21182 DDSTNCLVTSVCPCITFGQISEILNKGTPCKYIHIIFLEKFIF**SVTKNMMXXXXXXXX 21361 DD NCLVTSVCPCITFGQISEILNKGT Sbjct: 41 DDPANCLVTSVCPCITFGQISEILNKGT-------------------------------T 69 Query: 21362 XXXXXXXYVVCWD*TGLPSLYSYFYRSKMRGQCDLEEAPCADCLEH--CIL*TLCSYPRR 21535 TGLPSLYS FYRSKMRGQ DLEEAPC DCL H C LC R Sbjct: 70 SCGSRGALYCLLGLTGLPSLYSCFYRSKMRGQYDLEEAPCVDCLVHVFCEPCALCQEYRE 129 Query: 21536 QRA*EPWL*YGNR*FL*VYIPKKYLRNHITKIYINCVVGWQANMDRQSRGVTMPPYH 21706 + NR F + +GWQANMDRQSRGVTMPPYH Sbjct: 130 LK---------NRGF-------------------DMGIGWQANMDRQSRGVTMPPYH 158 Score = 47.6 bits (111), Expect(2) = 0.002 Identities = 21/25 (84%), Positives = 22/25 (88%) Frame = +3 Query: 21501 VFCEPCALIQEDRELKNLGFNMGIG 21575 VFCEPCAL QE RELKN GF+MGIG Sbjct: 116 VFCEPCALCQEYRELKNRGFDMGIG 140 Score = 22.3 bits (46), Expect(2) = 0.002 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 21361 ACASRGALCGLLGL 21402 +C SRGAL LLGL Sbjct: 70 SCGSRGALYCLLGL 83 >emb|CAA73043.1| (Y12433) polyprotein; reverse transcriptase, RNase H [pineapple bacilliform virus] Length = 149 Score = 122 bits (304), Expect = 4e-025 Identities = 65/150 (43%), Positives = 88/150 (58%) Frame = -2 Query: 51220 FVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVD 51041 ++DDILVYS+ EEH HLRT +VL+ L+ KC F L +LGH+I +G+ +D Sbjct: 1 YIDDILVYSKGVEEHLCHLRTTFQVLRQHSLFVRRKKCIFAAVQLEYLGHVISHEGVSMD 60 Query: 51040 TQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACE 50861 +K+EA++ W PTT E+R FL LA YYRRFV+ F IS L + K F WTN Sbjct: 61 KKKVEAIQEWPLPTTAKELRGFLGLAGYYRRFVKDFGKISKSLHEMLGKEG-FKWTNERH 119 Query: 50860 RSF*LLKDKLTIAPFLNLPEGPDGYVIYCD 50771 +F LK ++ AP L LP+ +I D Sbjct: 120 YAFQQLKKAVSAAPVLALPDFTIDIIIETD 149 Score = 72.6 bits (175), Expect = 5e-010 Identities = 40/96 (41%), Positives = 52/96 (53%) Frame = +1 Query: 9148 YSWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY 9327 YS E+H LR Q LR V+ K F + +LGH+IS EG+ +DK+K+E+ Sbjct: 8 YSKGVEEHLCHLRTTFQVLRQHSLFVRRKKCIFAAVQLEYLGHVISHEGVSMDKKKVEAI 67 Query: 9328 *SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPL 9435 +P P K + FL LA YYRRFV F IS L Sbjct: 68 QEWPLPTTAKELRGFLGLAGYYRRFVKDFGKISKSL 103 >emb|CAA73301.1| (Y12762) hypothetical protein [Zea mays] Length = 132 Score = 121 bits (301), Expect = 8e-025 Identities = 57/72 (79%), Positives = 62/72 (85%) Frame = -1 Query: 218 ATTAEHGRGNVQTGYRAHCYAFPGRFEAETSNVVITGNLLVCDWMASILFDPGSTFSYVS 39 ATT++HGRGN QT RAHCYAFPGR EAE S+ VITGNLLVCD MAS+LFDP STFSY+S Sbjct: 22 ATTSQHGRGNGQTNDRAHCYAFPGRSEAEASDAVITGNLLVCDCMASVLFDPRSTFSYIS 81 Query: 38 SSFAIGLNLHCE 3 SSF GLNLHCE Sbjct: 82 SSFDNGLNLHCE 93 Score = 64.0 bits (153), Expect = 2e-007 Identities = 34/91 (37%), Positives = 52/91 (56%), Gaps = 1/91 (1%) Frame = -3 Query: 52311 YALTSRQDQEASPNVITGILLLFS*SVYALIDPGSTL*FLSAFIASRIGIESELIE-PFE 52135 YA R + EAS VITG LL+ L DP ST ++S+ + + + E ++ P Sbjct: 41 YAFPGRSEAEASDAVITGNLLVCDCMASVLFDPRSTFSYISSSFDNGLNLHCEFLDMPIR 100 Query: 52134 VATPLGDSVIATRVYKNCSVVIYSRRTIADLI 52039 V+TP+G+SV+A +VY++C V T DL+ Sbjct: 101 VSTPVGESVVAEKVYRSCVVNFVGSNTYVDLV 132 Score = 53.1 bits (125), Expect = 4e-004 Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 7/105 (6%) Frame = +1 Query: 8002 GATFDTGGEAN-------HLYGITNCQEQENCKYVFTSMIKVFTFDVYALLNPGANLSYL 8160 GAT G N H Y E E V T + V L +P + SY+ Sbjct: 21 GATTSQHGRGNGQTNDRAHCYAFPGRSEAEASDAVITGNLLVCDCMASVLFDPRSTFSYI 80 Query: 8161 IPYVANHFEIVPEKLCEPFYISTPVGESILAERVYHDCHVSTNHNMTMADLV 8316 N + E L P +STPVGES++AE+VY C V+ + T DLV Sbjct: 81 SSSFDNGLNLHCEFLDMPIRVSTPVGESVVAEKVYRSCVVNFVGSNTYVDLV 132 >gb|AAD37350.1|AF142436_1 (AF142436) reverse transcriptase [Candida albicans] Length = 218 Score = 121 bits (301), Expect = 8e-025 Identities = 64/205 (31%), Positives = 122/205 (59%), Gaps = 3/205 (1%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPST--SP-WGAPVLFVRKKDGSLQMSIEYKQLNKV 51488 Y ++ E +EL++Q++ +LE G I P+ SP + +PVLFVRK D S ++ ++Y+ LN + Sbjct: 10 YPLSVPEQEELRKQVKKMLEIGLISPTPPQSPGYNSPVLFVRKSDSSYRLCVDYRLLNLI 69 Query: 51487 TVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVL 51308 + ++ +PR ++L + G + ++++D+ +++H++R+ + T+F Y F VL Sbjct: 70 IISKQFSIPRAEELVRDIAGHRFYTRLDMTAAFHQLRLEASSKYYTSFSAFGRRYHFNVL 129 Query: 51307 SFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKL 51128 FG++ + A ++M+ V ++DDI+VYS + EEH + LR + + Sbjct: 130 PFGLSISPASLCEVMSEVLDGIEG--CKSYIDDIIVYSNTLEEHEEILRELFSRFRKYTF 187 Query: 51127 YAMFSKCEFWLTSLAFLGHIIGADGIRV 51044 Y +KC F T+ +FLGH I ++G+ + Sbjct: 188 YLKPTKCSFGDTTTSFLGHEISSNGVSI 215 Score = 30.9 bits (68), Expect(2) = 5.5 Identities = 18/83 (21%), Positives = 35/83 (41%) Frame = +2 Query: 8792 VLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMK 8971 VLF+RK R+C+DY N + K++ + R +++ + H+++ Sbjct: 47 VLFVRKSDSSYRLCVDYRLLNLIIISKQFSIPRAEELVRDIAGHRFYTRLDMTAAFHQLR 106 Query: 8972 VRECDVPKTNFIKRYGHYLFLVI 9040 + T+F Y F V+ Sbjct: 107 LEASSKYYTSFSAFGRRYHFNVL 129 Score = 27.0 bits (58), Expect(2) = 5.5 Identities = 17/55 (30%), Positives = 25/55 (44%) Frame = +1 Query: 9148 YSWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKE 9312 YS E+H LR + R +K +K F FLGH IS G+ + ++ Sbjct: 164 YSNTLEEHEEILRELFSRFRKYTFYLKPTKCSFGDTTTSFLGHEISSNGVSIPED 218 >emb|CAB53446.1| (AJ243732) polymerase polyprotein [Bitis arietans] Length = 208 Score = 120 bits (297), Expect = 2e-024 Identities = 62/146 (42%), Positives = 90/146 (61%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVK 51479 Y M P EL+E+ + L +GFI P+ S APVLF KKDG L++ ++Y +N V V+ Sbjct: 63 YAMTPRELQEMCIYIDTNLARGFIEPARSRVAAPVLFREKKDGGLRLCVDYCGVNAVCVE 122 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 + YPLP + DL L + ++++DLR +Y+ VR+R D KTAF G + +RV+ FG Sbjct: 123 HLYPLPLLKDLLSHLATGRVYTRLDLREAYYRVRIRAGDEWKTAFNCPLGSFQYRVMPFG 182 Query: 51298 MTNALAVFMDLMNRVFKPFLDMFVIV 51221 + A AVFM L+N+V FL V+V Sbjct: 183 LQGAPAVFMQLINQVLHEFLYRGVLV 208 Score = 41.4 bits (95), Expect = 1.2 Identities = 28/97 (28%), Positives = 43/97 (43%) Frame = +2 Query: 8750 KSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXX 8929 + FI S A VLF KK LR+C+DY N V + YPL + Sbjct: 83 RGFIEPARSRVAAPVLFREKKDGGLRLCVDYCGVNAVCVEHLYPLPLLKDLLSHLATGRV 142 Query: 8930 XXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 ++LR +++++R D KT F G + + V+ Sbjct: 143 YTRLDLREAYYRVRIRAGDEWKTAFNCPLGSFQYRVM 179 >dbj|BAA95881.1| (AP002071) Similar to Lycopersicon esculentum haplotype Northern Lights Hcr9 gene cluster; polyprotein. (AF119040) [Oryza sativa] Length = 928 Score = 119 bits (296), Expect = 3e-024 Identities = 71/197 (36%), Positives = 102/197 (51%) Frame = -2 Query: 51034 KIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERS 50855 K + + W P + E+RSF LA YYR+FV + +IS PL L +K + W + E++ Sbjct: 528 KGQTITLWPTPQSVKELRSFFGLAGYYRKFVRHYGIISKPLTNLLRKGQLYLWNSDTEQA 587 Query: 50854 F*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYP 50675 F LK L AP L +P + +V+ D S G+G VL+Q G IA+ SR L Sbjct: 588 FQTLKHALVTAPVLAMPNFDETFVVETDASDKGIGAVLIQKGHPIAFLSRALGPRHQGLS 647 Query: 50674 THDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVD 50495 T+D + ++ A++ WR YL I TDH+SL ++ Q+ Q + L L Sbjct: 648 TYDKESLAIMLAVEHWRPYLQHAEFLIRTDHRSLSFLDDQRLTTPWQHKALTKLLGLRYK 707 Query: 50494 ILYHLGKANVVVDALSR 50444 I+Y G N V DALSR Sbjct: 708 IIYKKGCDNGVADALSR 724 Score = 85.4 bits (208), Expect = 7e-014 Identities = 39/110 (35%), Positives = 66/110 (59%) Frame = -3 Query: 50151 LRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKS 49972 ++++++ H+A + G Y ++ L+ W ++ + EFV+ CS CQ K EH K Sbjct: 795 VQQKIIANLHTAAIGGHSGINVTYQQIKQLFAWPQLRATVTEFVSACSVCQQAKSEHVKY 854 Query: 49971 GGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLP 49822 GLLQ + +P W+M+++DFI GLPR+ + I V++D+ +K AHF P Sbjct: 855 PGLLQTLPVPEHSWQMVSLDFIEGLPRSA-SFNCILVVVDKFSKYAHFAP 903 Score = 68.7 bits (165), Expect = 7e-009 Identities = 36/125 (28%), Positives = 68/125 (53%) Frame = +2 Query: 10118 DGVLKYQERLCVPNMDGHQDLIMEKSHSTTFSFDSGSIKMYRLLREVYTLKGLKKDIVKF 10297 DGVL +++R+ + + Q I+ H+ SG Y+ +++++ L+ + +F Sbjct: 778 DGVLYFKDRMWIGHNKAVQQKIIANLHTAAIGGHSGINVTYQQIKQLFAWPQLRATVTEF 837 Query: 10298 VAMFSNYQQVKVEHQRLGGLAKNIELP*WKWEIINMDFIKCFQ*SRRQHNSIFVIVDRLT 10477 V+ S QQ K EH + GL + + +P W+++++DFI+ S N I V+VD+ + Sbjct: 838 VSACSVCQQAKSEHVKYPGLLQTLPVPEHSWQMVSLDFIEGLPRS-ASFNCILVVVDKFS 896 Query: 10478 KSSHF 10492 K +HF Sbjct: 897 KYAHF 901 >gb|AAD11616.1| (AF049112) prpol [Zea mays] Length = 479 Score = 119 bits (295), Expect = 4e-024 Identities = 87/329 (26%), Positives = 150/329 (45%), Gaps = 8/329 (2%) Frame = -2 Query: 51472 YPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMT 51293 +PLPRID L D ++ S +D S YH++ +++ D PKT+F T G Y + + G+ Sbjct: 2 FPLPRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCYLRMPEGLK 61 Query: 51292 NALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFS 51113 NA F + +V + + V+ +VDDI+V S +E H L+ + L Sbjct: 62 NAGGSFSRMTAKVLQSQIGRNVLTYVDDIIVKSTKQENHIADLQETFASFRQAGLKLNPE 121 Query: 51112 KCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKF 50933 KC F + FLG ++ GI + KIEA+ PTT + RF+ + Sbjct: 122 KCVFGVKKGKFLGCLVSTKGIEANPNKIEAILRMEPPTTRKGAQRLTGRLASLNRFISRS 181 Query: 50932 ALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGL 50753 + P + + A F W + +++F LK L L P ++Y S + Sbjct: 182 RERNLPFFEVLKSAKVFQWGPSQQKAFEELKQYLIDLTTLTPPMPGAPLLLYVAASHSAV 241 Query: 50752 GCVLMQH---GKV-----IAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVD 50597 L+Q G++ + + S L + NY + L V+ A + RHY +++ Sbjct: 242 SAALVQEKLDGQLKKLVPVYFVSEVLSVSKKNYTELEKVLYAVLMASRKLRHYFQAYNI- 300 Query: 50596 IYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILY 50486 I + L+ I + +E R +W L ++ +D ++ Sbjct: 301 IVPSSQPLKDIMRNREATGRIGKWAAELNEFYIDYVH 337 Score = 33.6 bits (75), Expect(2) = 0.067 Identities = 29/120 (24%), Positives = 48/120 (39%) Frame = +1 Query: 9151 SWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY* 9330 S +E+H +DL+ + R + K F +K FLG ++S +GI + KIE+ Sbjct: 94 STKQENHIADLQETFASFRQAGLKLNPEKCVFGVKKGKFLGCLVSTKGIEANPNKIEAIL 153 Query: 9331 SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 P K RF+ R + P ++ + FQ + F EL + Sbjct: 154 RMEPPTTRKGAQRLTGRLASLNRFISRSRERNLPFFEVLKSAKVFQWGPSQQKAFEELKQ 213 Score = 30.9 bits (68), Expect(2) = 0.067 Identities = 16/54 (29%), Positives = 27/54 (49%) Frame = +2 Query: 8873 KYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFL 9034 ++PL RI ++ SG H++ +++ D PKT+FI G Y +L Sbjct: 1 EFPLPRIDSLVDAAASSELMSLLDCYSGYHQIWMKKEDEPKTSFITPSGTYCYL 54 >dbj|BAB02143.1| (AP000411) retroelement pol polyprotein-like [Arabidopsis thaliana] Length = 1118 Score = 118 bits (293), Expect = 7e-024 Identities = 69/197 (35%), Positives = 112/197 (56%), Gaps = 4/197 (2%) Frame = -2 Query: 51034 KIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERS 50855 KI+ + + P + +RS L A +Y+RF++ F+ I PL +L K KF + ++C ++ Sbjct: 507 KIDVMMSMQSPNSVKGIRSLLGHAGFYKRFIKDFSKIVRPLTQLLCKEQKFEFDDSCLQA 566 Query: 50854 F*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGK----VIAYASRQLRKHE 50687 F ++K+ L AP + P+ + + CD S +G VL Q I YASR L + Sbjct: 567 FNIIKESLVSAPIVQPPDWELPFEVMCDASDYAVGAVLRQRKDKKLHAIYYASRTLDGAQ 626 Query: 50686 NNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKELYLRQRRWLELLKD 50507 NY T + +L ++V A + +R YL V ++TDH +L+Y+ +K+ R RW+ LL+D Sbjct: 627 VNYATTEKELLVIVFAFEKFRSYLVRSKVIVHTDHATLRYLLSKKDAKPRLLRWILLLQD 686 Query: 50506 YDVDILYHLGKANVVVDALSR 50444 +D++I G N V D LSR Sbjct: 687 FDLEIKDKKGIENGVADNLSR 707 Score = 58.9 bits (140), Expect = 6e-006 Identities = 38/161 (23%), Positives = 74/161 (45%) Frame = -3 Query: 49932 WEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHG 49753 +++ +DF+ P + + I V +D ++K + R A ++L+ + I G Sbjct: 819 FDVWGIDFMGPFPSSYGN-EYILVAVDYVSKWVEAIACRKN-DAVVVLKLFKKIIFPRFG 876 Query: 49752 VPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIID 49573 VP +ISD G F + + G ++T +HPQT G+ E + + ++ +L ++ Sbjct: 877 VPRVVISDGGRHFINKVFANLLAKHGVNHKVATPYHPQTCGQVEISNREIKGILEKTVGK 936 Query: 49572 FKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPI 49450 + W L + Y Y + I P+ +YG+ C P+ Sbjct: 937 SRKDWAAKLDDALWTYRTAYKTPIGTTPFNLIYGKSCHLPV 977 >dbj|BAA92417.1| (AP001366) Similar to Sorghum bicolor Gypsy-Ty3 type retrotransposon RetroSor1, polyprotein. (AF098806) [Oryza sativa] Length = 1941 Score = 118 bits (293), Expect = 7e-024 Identities = 75/239 (31%), Positives = 114/239 (47%), Gaps = 1/239 (0%) Frame = -2 Query: 51712 IEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSP-WGAPVLFVRKK 51536 IE + V +P+ R AP ++E++ LLE GFIR P W A + V K Sbjct: 792 IEHRLAVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEWLANPVVVPKA 851 Query: 51535 DGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIP 51356 +G L+M I+ LNK K+ YPL RID + D G +D S YH++R+ D Sbjct: 852 NGKLRMCIDNTDLNKACPKDPYPLSRIDQIVDSTAGCDLLCFLDAYSGYHQIRMAREDEE 911 Query: 51355 KTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEH 51176 KTAF T G Y + + FG+ NA F + V +VDD++V +R++E Sbjct: 912 KTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNVEAYVDDLVVKTRNQETL 971 Query: 51175 ADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTT 50996 L L+ ++ KC F + + LG ++ A GI + +KI A++ P + Sbjct: 972 LSDLAETFESLRSARIKLNPDKCVFGVPAGKLLGFLVSARGIEANPEKIRAIERMRPPAS 1031 Score = 63.6 bits (152), Expect = 2e-007 Identities = 46/203 (22%), Positives = 92/203 (44%), Gaps = 5/203 (2%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ* 49882 ++W D + V +C CQ + + LQ I + +W + + +D + R Sbjct: 1616 FYWPTALNDAVDLVRRCRACQFHAKQIHQPAQALQIIPL-SWPFAVWGLDILGPFRRASG 1674 Query: 49881 K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRL-YVREIVRLHGVPTSIISDRGAQFTTN 49705 + +++ ID+ TK PV + + L +++ I GVP II+D G QFT+ Sbjct: 1675 GFEYLYIAIDKFTKWPEAYPV---IKIDKHSALKFIKGITAQFGVPNRIITDNGTQFTSE 1731 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF----KGSWDDHLPLI 49537 + + + +G ++ ++ HP+++G+ ER + L+ + SW + LP + Sbjct: 1732 LFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILRCLKTKTFNILKKHGDSWIEELPAV 1791 Query: 49536 EFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 +A + P+ +YG + P Sbjct: 1792 LWANRITPSRATGETPFFLVYGAEAVLP 1819 Score = 41.0 bits (94), Expect = 1.6 Identities = 29/97 (29%), Positives = 42/97 (42%), Gaps = 1/97 (1%) Frame = +2 Query: 8741 MFDKSFI*QNISP-WGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXX 8917 + + FI + I P W A + + K LR+CID N K YPL RI Sbjct: 827 LLEAGFIREVIHPEWLANPVVVPKANGKLRMCIDNTDLNKACPKDPYPLSRIDQIVDSTA 886 Query: 8918 XXXXXXNINLRSGCHKMKVRECDVPKTNFIKRYGHYLF 9031 ++ SG H++++ D KT FI G Y + Sbjct: 887 GCDLLCFLDAYSGYHQIRMAREDEEKTAFITPIGTYCY 924 >gb|AAC31805.1| (AF053745) pol polyprotein [Mus dunni endogenous virus] Length = 1203 Score = 116 bits (289), Expect = 2e-023 Identities = 101/406 (24%), Positives = 187/406 (45%), Gaps = 16/406 (3%) Frame = -2 Query: 51772 VDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKG 51593 V FP+V+ +++ D PI + Y M+ + ++ +R LL++G Sbjct: 143 VTAFPNVWAEQAGMGLAKQVPPVVVELKADATPISVRQYPMSKEAKEGIRPHIRRLLDQG 202 Query: 51592 FIRPSTSPWGAPVLFVRKKDGSLQMSIE-YKQLNKVTVKNRYPLPRIDDLFDQLQGAKC- 51419 + SPW P+L VRK + ++ +++NK + +P +L L + Sbjct: 203 ILVACQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVLDIHPTVPNPYNLLSSLPPERTW 262 Query: 51418 FSKIDLRSSYHEVRVREADIPKTAFWTR------YGHYDFRVLSFGMTNALAVFMDLMNR 51257 ++ +DL+ ++ +R+ AF R G + L G N+ +F + ++R Sbjct: 263 YTVLDLKDAFFCLRLHPKSQLLFAFEWRDPEGGQTGQLTWTRLPQGFKNSPTLFDEALHR 322 Query: 51256 VFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTS 51089 PF + ++ +VDD+L+ + S+E +L L + K + T Sbjct: 323 DLAPFRAQNPQLTLLQYVDDLLIAAASKELCQQGTERLLTELGNLGYRVSAKKAQICQTE 382 Query: 51088 LAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLI 50909 + +LG+ + + + + V PTTP +VR FL A + R ++ FA ++APL Sbjct: 383 VIYLGYTLRGGKRWLTEARKKTVMMIPPPTTPRQVREFLGTAGFCRLWIPGFATLAAPLY 442 Query: 50908 RLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD-TSGVGLGCVLMQH 50732 LT++ F W +R+F +K L AP L LP+ +V+Y D +G+ G + Sbjct: 443 PLTREGIPFEWKEEHQRAFEAIKSSLMTAPALALPDLTKSFVLYVDERAGIARGVLTQAL 502 Query: 50731 G---KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIF 50561 G + +AY S++L + +PT + V +K G V + H +L+ I Sbjct: 503 GPWKRPVAYLSKKLDPVASGWPTCLKAIAAVALLIKDADKLTMGQQVTVVAPH-ALESIV 561 Query: 50560 KQ 50555 +Q Sbjct: 562 RQ 563 Score = 51.2 bits (120), Expect = 0.001 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 1/131 (0%) Frame = -3 Query: 49863 VIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQK 49684 V +D + P +T +A+ + EI+ +GVP I SD G F + Sbjct: 914 VFVDTFSGWVEAFPTKTE-TAQIVAKKIFEEILPRYGVPKVIGSDNGPAFVAQVSQGLAT 972 Query: 49683 GLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKG-SWDDHLPLIEFAYNNHYHS 49507 LG L + PQ+ G+ ER +TL++ L ++ G W LPL F N Sbjct: 973 QLGIDWKLHCAYRPQSSGQVERMNRTLKETLTKLAMETGGKDWVALLPLALFRARN-TPG 1031 Query: 49506 SIQMAPYEALYG 49471 + P+E LYG Sbjct: 1032 RFGLTPFEVLYG 1043 Score = 40.6 bits (93), Expect = 2.1 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 4/183 (2%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFL----DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE 9216 F +P F +HR PF L + +KE +L L N Sbjct: 309 FKNSPTLFDEALHRDLAPFRAQNPQLTLLQYVDDLLIAAASKELCQQGTERLLTELGNLG 368 Query: 9217 *CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYR 9396 V K + C V++LG+ + G + + + ++ P P P+ + FL A + R Sbjct: 369 YRVSAKKAQICQTEVIYLGYTLRGGKRWLTEARKKTVMMIPPPTTPRQVREFLGTAGFCR 428 Query: 9397 RFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXXXHVFIVYCH 9576 ++ F+++++PL +T + F+ E + F + F++Y Sbjct: 429 LWIPGFATLAAPLYPLTREGIPFEWKEEHQRAFEAIKSSLMTAPALALPDLTKSFVLYVD 488 Query: 9577 ASCRMAR 9597 +AR Sbjct: 489 ERAGIAR 495 >emb|CAB53448.1| (AJ243730) polymerase polyprotein [Boulengerula taitanus] Length = 128 Score = 114 bits (283), Expect = 1e-022 Identities = 53/128 (41%), Positives = 81/128 (62%) Frame = -2 Query: 51625 KEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDL 51446 KE + L+ +G +R S SPW +P + ++KKDG+L+ +Y++LN +T+K+ YPLPRID+ Sbjct: 1 KEHVFALVNQGILRKSKSPWASPAVVIKKKDGTLRFCCDYRKLNSITIKDAYPLPRIDEA 60 Query: 51445 FDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDL 51266 D L A FS +DL S Y ++ + E DI KTA T +G +++ + FG+ NA A F L Sbjct: 61 LDALGNAXWFSSLDLTSGYFQMGMEEDDIEKTAVTTPFGLFEWTRMPFGLCNAPASFQRL 120 Query: 51265 MNRVFKPF 51242 M V + Sbjct: 121 METVMSDY 128 Score = 52.7 bits (124), Expect = 5e-004 Identities = 28/82 (34%), Positives = 42/82 (51%) Frame = +2 Query: 8774 SPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRS 8953 SPW + + ++KK LR C DY + N++T K YPL RI +++L S Sbjct: 18 SPWASPAVVIKKKDGTLRFCCDYRKLNSITIKDAYPLPRIDEALDALGNAXWFSSLDLTS 77 Query: 8954 GCHKMKVRECDVPKTNFIKRYG 9019 G +M + E D+ KT +G Sbjct: 78 GYFQMGMEEDDIEKTAVTTPFG 99 >gb|AAC02594.1| (AF045643) contains similarity to the retroviral aspartyl proteases and reverse transcriptase Pfam models (scores: 24.06 and 39.01) [Caenorhabditis elegans] Length = 1419 Score = 113 bits (279), Expect = 3e-022 Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 7/210 (3%) Frame = -2 Query: 51073 HIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQK 50894 H I AD + + ++A+ P +VR F+ ++ ++R+F+ F+ I+ PL R T+K Sbjct: 865 HEINADNYKPNRINVDAIVNLPTPRNVGDVRRFIGMSGFFRKFLPNFSEIAEPLTRFTRK 924 Query: 50893 AAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQHGK---- 50726 KF W +++ LK L P L P+ + I+ D S V G VLMQ + Sbjct: 925 GHKFVWKAEQQKAVDTLKQALISKPILVFPDYDKEFHIFTDASAVAQGAVLMQQMEDSTK 984 Query: 50725 ---VIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQ 50555 IAY SR L E+ +P +L ++ AL+ +R Y+ I++DH+ Y+ + Sbjct: 985 DYAAIAYTSRTLSDTESRWPAIQTELGAIIFALRQFRPYIGQSRTTIHSDHRPPMYLLGK 1044 Query: 50554 KELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSR 50444 ++ RWL L YD I++ GK N V D LSR Sbjct: 1045 SKVNDNLARWLIELAQYDTRIVHIDGKKNTVADCLSR 1081 Score = 91.3 bits (223), Expect = 1e-015 Identities = 47/155 (30%), Positives = 89/155 (57%) Frame = -2 Query: 51838 IYHLVRVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPP 51659 + +L V+ + E LQ++ +DE+ DVF I + P+ Sbjct: 705 VSNLSSVNISSNERAQLQAL--IDEYHDVFSKNAYDLGSSKTDPVHIYTTTEV-PVRSRA 761 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVK 51479 YR EL++ + L++ G I S +PW +P++ ++KK+GSL++ +++++LN+VTV Sbjct: 762 YRTPVRYQAELEKHINSLIQSGRIVESNTPWTSPIVLIKKKNGSLRVCLDFRKLNEVTVP 821 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRV 51374 + YPLPRID + +Q+ G+K F+ +D+ + Y ++R+ Sbjct: 822 DNYPLPRIDSIIEQIGGSKYFTSLDMANGYLQLRL 856 Score = 67.9 bits (163), Expect = 1e-008 Identities = 30/96 (31%), Positives = 53/96 (54%) Frame = -3 Query: 49755 GVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASII 49576 G P+ ++SDR + FT+ +R+F + L Q +L+ +H + +G +ERT +T +M+ + Sbjct: 1121 GTPSQLVSDRASTFTSEAFRAFCRKLEIQQHLAIPYHSKGNGATERTFRTFHNMVSKHVN 1180 Query: 49575 DFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGR 49468 WD LP + F YN H + P+ ++GR Sbjct: 1181 KTHTDWDQILPYMTFVYNTTVHDTTGETPFFLIFGR 1216 Score = 41.4 bits (95), Expect = 1.2 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +2 Query: 8774 SPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRI 8893 +PW + ++ ++KK LR+C+D+ + N VT YPL RI Sbjct: 790 TPWTSPIVLIKKKNGSLRVCLDFRKLNEVTVPDNYPLPRI 829 >emb|CAB38566.1| (X51929) polyprotein [Felis silvestris] Length = 1046 Score = 111 bits (275), Expect = 9e-022 Identities = 94/358 (26%), Positives = 170/358 (47%), Gaps = 24/358 (6%) Frame = -2 Query: 51772 VDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKG 51593 + +FP + ++ ID+ P+ I Y M+ ++ + LE G Sbjct: 1 LQDFPQAWAETGGLGRAKCQVPIIIDLKPTAMPVSIRQYPMSKEAHMGIQPHITRFLELG 60 Query: 51592 FIRPSTSPWGAPVLFVRKKDGSLQMSIE-YKQLNKVTVKNRYPLPRIDDLFDQLQGAKC- 51419 +RP SPW P+L V+K ++ +++NK T+ +P +L L + Sbjct: 61 VLRPCRSPWNTPLLPVKKPGTRDYRPVQDLREVNKRTMDIHPTVPNPYNLLSTLSPDRTW 120 Query: 51418 FSKIDLRSSYH--------------EVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALA 51281 ++ +DL+ ++ E R E I WTR L G N+ Sbjct: 121 YTVLDLKDAFFCLPLAPQSQELFAFEWRDPERGISGQLTWTR--------LPQGFKNSPT 172 Query: 51280 VFMDLMNRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFS 51113 +F + ++R F ++ ++ +VDD+L+ + ++E + +LR L + A Sbjct: 173 LFDEALHRDLTDFRTQHPEVTLLQYVDDLLLAAPTKEACIRGTKHLLRELGDKGYRASAK 232 Query: 51112 KCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKF 50933 K + T + +LG+I+ + +IE V P P EVR FL A + R ++ F Sbjct: 233 KAQICQTKVTYLGYILSEGKRWLTPGRIETVAHIPPPQNPREVREFLGTAGFCRLWIPGF 292 Query: 50932 ALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD-TSGVG 50756 A ++APL LT+++A F W + +F LK+ L AP L LP+ + ++ D G+ Sbjct: 293 AELAAPLYALTKESAPFTWQEKHQSAFEALKEALLSAPALGLPDTSKPFTLFIDEKQGIA 352 Query: 50755 LGCVLMQHG---KVIAYASRQL 50699 G + + G + +AY S++L Sbjct: 353 KGVLTQKLGPWKRPVAYLSKKL 374 Score = 41.0 bits (94), Expect = 1.6 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Frame = -3 Query: 49863 VIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQK 49684 V +D + P R +A + + EI G+P I SD G F + + + Sbjct: 784 VFVDTFSGWVEAYPTRQE-TAHMVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQGLAR 842 Query: 49683 GLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFAYNNHYHS 49507 LG L + PQ+ G+ ER +T+++ L + ++ W L L N + Sbjct: 843 TLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARN-TPN 901 Query: 49506 SIQMAPYEALYG 49471 + PYE LYG Sbjct: 902 RFGLTPYEILYG 913 >gb|AAF15098.1| (AF151794) pol protein [Phascolarctos cinereus] Length = 1127 Score = 110 bits (272), Expect = 2e-021 Identities = 101/403 (25%), Positives = 187/403 (46%), Gaps = 17/403 (4%) Frame = -2 Query: 51763 FPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIR 51584 FP V+ +++ D P+ + Y M+ + ++ ++ L+ G + Sbjct: 108 FPMVWAEKAGMGLANQVPPVVVELKSDASPVAVRQYPMSKEAREGIRPHIQRFLDLGILV 167 Query: 51583 PSTSPWGAPVLFVRKKDGSLQMSIE-YKQLNKVTVKNRYPLPRIDDLFDQLQGAKC-FSK 51410 P SPW P+L V+K + ++ +++NK +P +L L + +S Sbjct: 168 PCQSPWNTPLLPVKKPGTNDYRPVQDLREVNKRVQDIHPTVPNPYNLLSSLPPSHTWYSV 227 Query: 51409 IDLRSSYHEVRVREADIPKTAFWTR------YGHYDFRVLSFGMTNALAVFMDLMNRVFK 51248 +DL+ ++ +++ P AF R G + L G N+ +F + ++R Sbjct: 228 LDLKDAFFCLKLHPNSQPLFAFEWRDPEKGNTGQLTWTRLPQGFKNSPTLFDEALHRDLA 287 Query: 51247 PFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAF 51080 F + ++ +VDD+LV + + + + R +L+ L K + + + Sbjct: 288 SFRALNPQVVMLQYVDDLLVAAPTYRDCKEGTRRLLQELSKLGYRVSAKKAQLCREEVTY 347 Query: 51079 LGHII-GADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRL 50903 LG+++ G +K +K T PTTP +VR FL A + R ++ FA ++APL L Sbjct: 348 LGYLLKGGKRWLTPARKATVMKIPT-PTTPRQVREFLGTAGFCRLWIPGFASLAAPLYPL 406 Query: 50902 TQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD-TSGVGLGCVLMQHG- 50729 T++ F WT A + +F +K+ L AP L LP+ + +Y D GV G + G Sbjct: 407 TREKVPFTWTEAHQEAFGRIKEALLSAPALALPDLTKPFALYVDEKEGVARGVLTQTLGP 466 Query: 50728 --KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQ 50555 + +AY S++L + +PT + V LK G +V + H +L+ I +Q Sbjct: 467 WRRPVAYLSKKLDPVASGWPTCLKAIAAVALLLKDADKLTLGQNVLVIAPH-NLESIVRQ 525 Score = 45.7 bits (106), Expect = 0.062 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Frame = -3 Query: 49863 VIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQK 49684 V ID + P +T +A + + EI+ G+P + SD G F + Sbjct: 861 VFIDTFSGWVEAFPTKTE-TALTVCKKILEEILPRFGIPKVLGSDNGPAFVAQVSQGLAT 919 Query: 49683 GLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKG-SWDDHLPLIEFAYNNHYHS 49507 LG L + PQ+ G+ ER +T+++ L ++ G W LPL N Sbjct: 920 QLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLALLRARN-TPG 978 Query: 49506 SIQMAPYEALYG 49471 + PYE L+G Sbjct: 979 QFGLTPYEILHG 990 Score = 43.0 bits (99), Expect = 0.41 Identities = 28/109 (25%), Positives = 52/109 (47%) Frame = +1 Query: 9184 RIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI 9363 R +LQ L V K + C + V +LG+++ G + + + P P P+ + Sbjct: 320 RRLLQELSKLGYRVSAKKAQLCREEVTYLGYLLKGGKRWLTPARKATVMKIPTPTTPRQV 379 Query: 9364 *SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 FL A + R ++ F+S+++PL +T KV F +E + F + + Sbjct: 380 REFLGTAGFCRLWIPGFASLAAPLYPLTREKVPFTWTEAHQEAFGRIKE 428 >gb|AAF71196.1| (AF182203) pol protein integrase region [Pinus brutia] Length = 131 Score = 109 bits (271), Expect = 3e-021 Identities = 56/132 (42%), Positives = 84/132 (63%) Frame = -3 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 E ++MDFIT LP++ K I V++DRL+K AHF + ++ + ++ +I +LHG+ Sbjct: 1 EKVSMDFITSLPKSGNK-SVIMVVVDRLSKYAHFCTLPQPFTPTLVAQTFMDQIFKLHGM 59 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 PTSI+SDR FT+NFW+ + GTQ+ LST++HPQTDG++E + LE LR + Sbjct: 60 PTSIVSDRDPIFTSNFWQELFRIQGTQLKLSTSYHPQTDGQTEAVNKCLETYLRCFTSEK 119 Query: 49569 KGSWDDHLPLIE 49534 + W LPL E Sbjct: 120 QHLWVQWLPLAE 131 Score = 54.3 bits (128), Expect = 2e-004 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 1/131 (0%) Frame = +2 Query: 10391 EIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGF 10570 E ++MDFI S + + I V+VDRL+K +HF + A+ ++ ++ +LHG Sbjct: 1 EKVSMDFITSLPKSGNK-SVIMVVVDRLSKYAHFCTLPQPFTPTLVAQTFMDQIFKLHGM 59 Query: 10571 LVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILK-EVEKQCTIKTLEYMLRACVIDF 10747 I+S+R FT+ W+ + QG++L + + + + + K LE LR + Sbjct: 60 PTSIVSDRDPIFTSNFWQELFRIQGTQLKLSTSYHPQTDGQTEAVNKCLETYLRCFTSEK 119 Query: 10748 KVNWDDNMPLIE 10783 + W +PL E Sbjct: 120 QHLWVQWLPLAE 131 >gb|AAA46810.1| (M26927) pol polyprotein [Gibbon ape leukemia virus] Length = 1165 Score = 109 bits (271), Expect = 3e-021 Identities = 99/403 (24%), Positives = 185/403 (45%), Gaps = 16/403 (3%) Frame = -2 Query: 51763 FPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIR 51584 FP V+ +++ P+ + Y M+ + ++ ++ L+ G + Sbjct: 146 FPTVWAERAGMGLANQVPPVVVELRSGASPVAVRQYPMSKEAREGIRPHIQKFLDLGVLV 205 Query: 51583 PSTSPWGAPVLFVRKKDGSLQMSIE-YKQLNKVTVKNRYPLPRIDDLFDQLQGAKC-FSK 51410 P SPW P+L V+K + ++ +++NK +P +L L + +S Sbjct: 206 PCRSPWNTPLLPVKKPGTNDYRPVQDLREINKRVQDIHPTVPNPYNLLSSLPPSYTWYSV 265 Query: 51409 IDLRSSYHEVRVREADIPKTAF-WT-----RYGHYDFRVLSFGMTNALAVFMDLMNRVFK 51248 +DL+ ++ +R+ P AF W G + L G N+ +F + ++R Sbjct: 266 LDLKDAFFCLRLHPNSQPLFAFEWKDPEKGNTGQLTWTRLPQGFKNSPTLFDEALHRDLA 325 Query: 51247 PFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAF 51080 PF + ++ +VDD+LV + + E+ + +L+ L K + + + Sbjct: 326 PFRALNPQVVLLQYVDDLLVAAPTYEDCKKGTQKLLQELSKLGYRVSAKKAQLCQREVTY 385 Query: 51079 LGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLT 50900 LG+++ + + V PTTP +VR FL A + R ++ FA ++APL LT Sbjct: 386 LGYLLKEGKRWLTPARKATVMKIPVPTTPRQVREFLGTAGFCRLWIPGFASLAAPLYPLT 445 Query: 50899 QKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD-TSGVGLGCVLMQHG-- 50729 +++ F WT +++F +K L AP L LP+ + +Y D +GV G + G Sbjct: 446 KESIPFIWTEEHQQAFDHIKKALLSAPALALPDLTKPFTLYIDERAGVARGVLTQTLGPW 505 Query: 50728 -KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQ 50555 + +AY S++L + +PT + V LK G +V + H SL+ I +Q Sbjct: 506 RRPVAYLSKKLDPVASGWPTCLKAVAAVALLLKDADKLTLGQNVTVIASH-SLESIVRQ 563 Score = 51.2 bits (120), Expect(2) = 3e-005 Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 2/213 (0%) Frame = -3 Query: 50046 MKKDIAEFVAQCSNCQ*VK-IEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DS 49870 ++ + E +QC C + + G Q + P WE+ + G + Sbjct: 841 LQSAVREVTSQCQACAMTNAVTTYRETGKRQRGDRPGVYWEVDFTEIKPGRYGNK----Y 896 Query: 49869 IWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSF 49690 + V ID + P +T +A + + EI+ G+P + SD G F + Sbjct: 897 LLVFIDTFSGWVEAFPTKTE-TALIVCKKILEEILPRFGIPKVLGSDNGPAFVAQVSQGL 955 Query: 49689 QKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKG-SWDDHLPLIEFAYNNHY 49513 LG L + PQ+ G+ ER +T+++ L ++ G W LPL N Sbjct: 956 ATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLALETGGKDWVTLLPLALLRARN-T 1014 Query: 49512 HSSIQMAPYEALYGRKCRSPIGWFDVGETKLIGPD 49408 + PYE LYG P + GET +GPD Sbjct: 1015 PGRFGLTPYEILYG----GPPPILESGET--LGPD 1043 Score = 25.1 bits (53), Expect(2) = 3e-005 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -1 Query: 49304 FQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIV 49194 FQ+GD V ++R R L PR+ GPY ++ Sbjct: 1083 FQVGDQV---------LVRRHRPSSLEPRWKGPYLVL 1110 >emb|CAB38458.1| (AL035631) BACN32G13.a [Drosophila melanogaster] Length = 889 Score = 109 bits (269), Expect = 5e-021 Identities = 58/171 (33%), Positives = 103/171 (59%), Gaps = 8/171 (4%) Frame = -2 Query: 51679 QPIF--IPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKK------DGSL 51524 +PI+ + PY M A+ + ++++DLL I+ S SP+ P+ V KK + Sbjct: 304 EPIYAKLYPYPMGVADF--VNKEIQDLLRNDIIQKSASPYN-PIWVVDKKGTDDTGNRKK 360 Query: 51523 QMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAF 51344 ++ I++++LN+ T+ ++YP+P I + L + FS +DL+S YH+V + E D KT+F Sbjct: 361 RLMIDFRKLNEHTIPDKYPMPNISMILGNLGKERYFSTLDLKSGYHQVVLAERDREKTSF 420 Query: 51343 WTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADH 51167 G Y+F+ L FG+ NA +F ++ + + F V+VDD++++S+ EE H H Sbjct: 421 SVNGGKYEFKRLPFGLRNAAGIFQRTIDDILLEQIGKFCYVYVDDVIIFSQDEEAHIKH 479 Score = 90.5 bits (221), Expect = 2e-015 Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 50815 LNLPEGPDGYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHAL 50636 L+ P+ + + D S G+G VL Q G+ I SR L+ E NY T++ +L +V AL Sbjct: 497 LSYPDYKKPFDLTTDASAYGIGAVLSQEGRPITMISRTLKGSEANYATNERELLAIVWAL 556 Query: 50635 KIWRHYLYGF-HVDIYTDHKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVV 50459 RHYLYG ++I+TDH+ L + + + +RW + +++ + Y GK N+V Sbjct: 557 VKLRHYLYGVKDINIFTDHQPLTFSVSESNPNAKIKRWKARIDEFNARLFYKPGKENLVA 616 Query: 50458 DALSRKSMGSLTDVQPE 50408 DALSR+ + L +PE Sbjct: 617 DALSRQQLNVLEQEEPE 633 Score = 42.2 bits (97), Expect(2) = 4e-005 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Frame = +3 Query: 9516 DYLFDFDIAFGYSCIYSVLSCIL*NGKVIDYDSK*LMIYEKNYPTHDIELASLVFSLKIW 9695 DY FD+ S Y + + + G+ I S+ L E NY T++ EL ++V++L Sbjct: 501 DYKKPFDLTTDASA-YGIGAVLSQEGRPITMISRTLKGSEANYATNERELLAIVWALVKL 559 Query: 9696 CHFLYGIR-VDIFTDNKSL 9749 H+LYG++ ++IFTD++ L Sbjct: 560 RHYLYGVKDINIFTDHQPL 578 Score = 33.6 bits (75), Expect(2) = 4e-005 Identities = 18/65 (27%), Positives = 32/65 (48%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSILKEKEELAKDVHRLVRLG 9955 N K +RW +++ + Y PGK N+V +L R + +E E A +H L Sbjct: 588 NAKIKRWKARIDEFNARLFYKPGKENLVADALSRQQLNVLE-QEEPESCAATIHNLKPAL 646 Query: 9956 VRIMD 9970 +++M+ Sbjct: 647 LQLMN 651 >gb|AAF19542.1|AC007190_10 (AC007190) F23N19.18 [Arabidopsis thaliana] Length = 1794 Score = 60.9 bits (145), Expect = 2e-006 Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 22/132 (16%) Frame = -2 Query: 45025 KKMVGGNKVEVI-DLGRSVLTGKLGTHLVCLRRRLSYTLHKV*DHRPLYRTN*NHVD*YF 44849 +KM GG+ VE + D+G SVLTG G L L R+L LHKV D PLY N D Sbjct: 307 RKMKGGDGVEAMADVGGSVLTGINGNPLGVLARQLGLPLHKVRDICPLYLPNGELADASV 366 Query: 44848 DKTVMVAYS*LLEKASKVRQEL-----SLVVSLREKISLF----------------SFHL 44732 D + +++ LL++ K+RQ + S+ V L E + F +HL Sbjct: 367 DSKIEASFNKLLDRVCKLRQSMIEENKSVDVPLGEALETFRLVYGVAEDQQERMLLDWHL 426 Query: 44731 KILEYANAGLTHAGTNMSL*YGRGSLLIAQWKRN 44630 LEYANA L G+L +A W ++ Sbjct: 427 ANLEYANATLL------------GNLSMAYWDQD 448 Score = 59.7 bits (142), Expect(2) = 2e-015 Identities = 27/51 (52%), Positives = 37/51 (71%) Frame = -3 Query: 45480 LNKMPTSETFVALMDGFPSHSLKDEEIEVGLVSVIGGIEQCNYILIRNHII 45328 + K SE +A+ GFP +SL +EEIE +VS+IGG +Q NYI++RNHII Sbjct: 153 VGKEVDSEALIAMSVGFPVYSLTEEEIEANVVSIIGGKDQANYIVVRNHII 203 Score = 53.1 bits (125), Expect(3) = 6e-021 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 5/105 (4%) Frame = +3 Query: 59262 LHKMRDLCPLYHVDGKPVDNYLEKKVEIV*NELLEKANRVKQ----ESTHV-VSLEEALE 59426 LHK+RD+CPLY +G+ D ++ K+E N+LL++ +++Q E+ V V L EALE Sbjct: 345 LHKVRDICPLYLPNGELADASVDSKIEASFNKLLDRVCKLRQSMIEENKSVDVPLGEALE 404 Query: 59427 TF*KEFGVAMNVKEMNFXXXXXXXXXXXXAGLIXXXXXXXXXXXXPYDNG 59576 TF +GVA + +E A L+ PY+ G Sbjct: 405 TFRLVYGVAEDQQERMLLDWHLANLEYANATLLGNLSMAYWDQDDPYEMG 454 Score = 51.2 bits (120), Expect = 0.001 Identities = 45/110 (40%), Positives = 51/110 (45%), Gaps = 10/110 (9%) Frame = -3 Query: 44676 YDMGGDHFLLPSGNET*AHALCGYYF*KMFRPFVIVGIV*R*LSGVNYLRRY-GNVQHSS 44500 Y+MGGDH +P GNE HAL P V G N + Y GN + Sbjct: 451 YEMGGDHCFIPGGNEIFVHALAENL------PIFYGSTVESIRYGSNGVLVYTGNKEFHC 504 Query: 44499 RCFL---------KCSI*FIP*FPQQKLDT*N*ILGFGLLN*VTMLFLYVFWNSNIDIFG 44347 L K SI F P P +K + LGFGLLN V MLF FW ID FG Sbjct: 505 DMALCTVPLGVLKKGSIEFYPELPHKKKEAIQ-RLGFGLLNKVAMLFPCNFWGEEIDTFG 563 Score = 50.8 bits (119), Expect(3) = 6e-021 Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 2/43 (4%) Frame = +3 Query: 59730 CDIS--TFPLRVLKNGAIRFIPVFPQQKLDTIKKLGIGLLNKVAM 59858 CD++ T PL VLK G+I F P P +K + I++LG GLLNKVAM Sbjct: 504 CDMALCTVPLGVLKKGSIEFYPELPHKKKEAIQRLGFGLLNKVAM 548 Score = 50.8 bits (119), Expect(2) = 2e-015 Identities = 34/84 (40%), Positives = 48/84 (56%), Gaps = 3/84 (3%) Frame = -1 Query: 45248 LLDYAYNYFLLYEYINFTVELATK-SRIPTKPSVS--RVIFIGTSLVGLVAARQLMLFEF 45078 L+D AYN+ L + YINF + K +++ + V V+ +G L GLVAARQL+ F Sbjct: 230 LVDTAYNFLLEHGYINFGLAPVIKEAKLRSFDGVEPPNVVVVGAGLAGLVAARQLLSMGF 289 Query: 45077 EVIVLERLKSASGRFYT*KDGRRKQGG 44997 V+VLE GR T R+ +GG Sbjct: 290 RVLVLEGRDRPGGRVKT----RKMKGG 312 Score = 45.3 bits (105), Expect(3) = 6e-021 Identities = 21/57 (36%), Positives = 30/57 (51%) Frame = +1 Query: 59563 PMIMEGDDYFLPGGNGGLVHALTKNVPSIFEKIIHATSYNRNSLKVINGGQLFEGDV 59733 P M GD F+PGGN VHAL +N+P + + + Y N + V G + F D+ Sbjct: 450 PYEMGGDHCFIPGGNEIFVHALAENLPIFYGSTVESIRYGSNGVLVYTGNKEFHCDM 506 >gb|AAF71195.1| (AF182201) pol protein integrase region [Pinus brutia] Length = 131 Score = 107 bits (265), Expect = 1e-020 Identities = 57/132 (43%), Positives = 79/132 (59%) Frame = -3 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 E ++MDFITGLP+++ K I V++DRLTK AHF + + A ++ I +LHG Sbjct: 1 EKVSMDFITGLPKSEGK-SVIMVVVDRLTKYAHFCALSHPFKASTVSTAFMETIQKLHGN 59 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 P I+SDR FT NFW LGTQ+ S+++HPQ+DGK+E + LE LR + D Sbjct: 60 PKIIVSDRDPIFTGNFWTELFSCLGTQLAHSSSYHPQSDGKTEIVNKCLEGYLRCFVSDK 119 Query: 49569 KGSWDDHLPLIE 49534 + W LPL E Sbjct: 120 QTQWVKWLPLAE 131 Score = 57.4 bits (136), Expect = 2e-005 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Frame = +2 Query: 10391 EIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGF 10570 E ++MDFI S + + I V+VDRLTK +HF +S A + +++ +++LHG Sbjct: 1 EKVSMDFITGLPKSEGK-SVIMVVVDRLTKYAHFCALSHPFKASTVSTAFMETIQKLHGN 59 Query: 10571 LVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILKEVEK-QCTIKTLEYMLRACVIDF 10747 I+S+R FT W G++L + + K + K LE LR V D Sbjct: 60 PKIIVSDRDPIFTGNFWTELFSCLGTQLAHSSSYHPQSDGKTEIVNKCLEGYLRCFVSDK 119 Query: 10748 KVNWDDNMPLIE 10783 + W +PL E Sbjct: 120 QTQWVKWLPLAE 131 >dbj|BAA89659.1| (D10032) gag-pol precursor polyprotein [Baboon endogenous virus strain M7] Length = 1727 Score = 107 bits (264), Expect = 2e-020 Identities = 92/358 (25%), Positives = 168/358 (46%), Gaps = 24/358 (6%) Frame = -2 Query: 51772 VDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKG 51593 + +FP + + ID+ P+ I Y M+ +++ + LE G Sbjct: 682 LQDFPQAWAETGGLGRAKCQAPIIIDLKPTAVPVSIKQYPMSLEAHMGIRQHIIKFLELG 741 Query: 51592 FIRPSTSPWGAPVLFVRKKDGSLQMSIE-YKQLNKVTVKNRYPLPRIDDLFDQLQ-GAKC 51419 +RP SPW P+L V+K ++ +++NK TV +P +L L+ Sbjct: 742 VLRPCRSPWNTPLLPVKKPGTQDYRPVQDLREINKRTVDIHPTVPNPYNLLSTLKPDYSW 801 Query: 51418 FSKIDLRSSYH--------------EVRVREADIPKTAFWTRYGHYDFRVLSFGMTNALA 51281 ++ +DL+ ++ E + E I WTR L G N+ Sbjct: 802 YTVLDLKDAFFCLPLAPQSQELFAFEWKDPERGISGQLTWTR--------LPQGFKNSPT 853 Query: 51280 VFMDLMNRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFS 51113 +F + ++R F ++ ++ +VDD+L+ + +++ R +L+ L + A Sbjct: 854 LFDEALHRDLTDFRTQHPEVTLLQYVDDLLLAAPTKKACTQGTRHLLQELGEKGYRASAK 913 Query: 51112 KCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKF 50933 K + T + +LG+I+ + +IE V P P EVR FL A + R ++ F Sbjct: 914 KAQICQTKVTYLGYILSEGKRWLTPGRIETVARIPPPRNPREVREFLGTAGFCRLWIPGF 973 Query: 50932 ALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD-TSGVG 50756 A ++APL LT+++ F W + +F LK L AP L LP+ + ++ D G+ Sbjct: 974 AELAAPLYALTKESTPFTWQTEHQLAFEALKKALLSAPALGLPDTSKPFTLFLDERQGIA 1033 Query: 50755 LGCVLMQHG---KVIAYASRQL 50699 G + + G + +AY S++L Sbjct: 1034 KGVLTQKLGPWKRPVAYLSKKL 1055 Score = 40.6 bits (93), Expect = 2.1 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 1/131 (0%) Frame = -3 Query: 49863 VIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQK 49684 V +D + P R +A + + EI G+P I SD G F + + + Sbjct: 1465 VFVDTFSGWVEAFPTRQE-TAHIVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQGLAR 1523 Query: 49683 GLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFAYNNHYHS 49507 LG L + PQ+ G+ ER +T+++ L + ++ W L L N + Sbjct: 1524 ILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARN-TPN 1582 Query: 49506 SIQMAPYEALYG 49471 + PYE LYG Sbjct: 1583 RFGLTPYEILYG 1594 Score = 39.5 bits (90), Expect = 4.6 Identities = 28/88 (31%), Positives = 46/88 (51%), Gaps = 1/88 (1%) Frame = +1 Query: 9184 RIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIR-VDKEKIESY*SFPRPIFPKN 9360 R +LQ L K K + C V +LG+I+S EG R + +IE+ P P P+ Sbjct: 897 RHLLQELGEKGYRASAKKAQICQTKVTYLGYILS-EGKRWLTPGRIETVARIPPPRNPRE 955 Query: 9361 I*SFLALAYYYRRFVDRFSSISSPLTKIT 9447 + FL A + R ++ F+ +++PL +T Sbjct: 956 VREFLGTAGFCRLWIPGFAELAAPLYALT 984 >gb|AAD55051.1| (AF169256) putative gag-pol polyprotein [Murine leukemia virus] Length = 1734 Score = 107 bits (264), Expect = 2e-020 Identities = 91/375 (24%), Positives = 174/375 (46%), Gaps = 18/375 (4%) Frame = -2 Query: 51823 RVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAP 51644 R+H+ +AE + +FP + + I + + P+ I Y M+ Sbjct: 667 RLHETSAEPEASPRSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQ 726 Query: 51643 AELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPL 51464 +K ++ LL++G + P SPW P+L V+K + ++ L +V + Sbjct: 727 EARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ--DLREVNKRVEDIH 784 Query: 51463 PRIDDLFDQLQGA----KCFSKIDLRSSYHEVRVREADIPKTAFWTR------YGHYDFR 51314 P + + ++ L G + ++ +DL+ ++ +R+ P AF R G + Sbjct: 785 PTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGMGISGQLTWT 844 Query: 51313 VLSFGMTNALAVFMDLMNRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 L G N+ +F + ++R F D+ ++ +VDDIL+ + SE + R +L Sbjct: 845 RLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLT 904 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 L + A K + + +LG+++ + + E V P TP ++R FL Sbjct: 905 LGNLGYRASAKKAQLCQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGT 964 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 A + R ++ FA ++APL LT+ F W ++++ +K L AP L LP+ + Sbjct: 965 AGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPF 1024 Query: 50785 VIYCD-TSGVGLGCVLMQHG---KVIAYASRQL 50699 ++ D G G + + G + +AY S++L Sbjct: 1025 ELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKL 1057 Score = 43.0 bits (99), Expect = 0.41 Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 2/197 (1%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG-GLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 Y+ K + C+ C V K G G+ P WE+ + GL + Sbjct: 1407 YYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRPGSHWEIDFTEVKPGLYGYK 1466 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + V +D + P + +A + + EI G+P + SD G FT+ Sbjct: 1467 ----YLLVFVDTFSGWVEAFPTKRE-TARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQ 1521 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFA 49528 +S LG L + PQ+ G+ ER +T+++ L + ++ W LPL + Sbjct: 1522 VSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYR 1581 Query: 49527 YNNHYHSSIQMAPYEALYG 49471 N + PYE LYG Sbjct: 1582 ARN-TPGPHGLTPYEILYG 1599 Score = 39.5 bits (90), Expect = 4.6 Identities = 37/139 (26%), Positives = 62/139 (43%), Gaps = 5/139 (3%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFL----DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE 9216 F +P F +HR F DL + ++ D R +L TL N Sbjct: 850 FKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLTLGNLG 909 Query: 9217 *CVKFSK*EFCLKYVVFLGHIISGEGIR-VDKEKIESY*SFPRPIFPKNI*SFLALAYYY 9393 K + C K V +LG+++ EG R + + + E+ P P P+ + FL A + Sbjct: 910 YRASAKKAQLCQKQVKYLGYLLK-EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFC 968 Query: 9394 RRFVDRFSSISSPLTKIT*TKVQF 9465 R ++ F+ +++PL +T T F Sbjct: 969 RLWIPGFAEMAAPLYPLTKTGTLF 992 >gb|AAC98548.1| (AF019230) pol polypeptide [Murine leukemia virus] Length = 1204 Score = 106 bits (262), Expect = 3e-020 Identities = 89/375 (23%), Positives = 174/375 (45%), Gaps = 18/375 (4%) Frame = -2 Query: 51823 RVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAP 51644 R+H+ + E + +FP + + I + + P+ I Y M+ Sbjct: 134 RLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSSPVSIKQYPMSQ 193 Query: 51643 AELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPL 51464 +K ++ LL++G + P SPW P+L V+K + ++ L +V + Sbjct: 194 EARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ--DLREVNKRVEDIH 251 Query: 51463 PRIDDLFDQLQGA----KCFSKIDLRSSYHEVRVREADIPKTAFWTR------YGHYDFR 51314 P + + ++ L G + ++ +DL+ ++ +R+ P AF R G + Sbjct: 252 PTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWT 311 Query: 51313 VLSFGMTNALAVFMDLMNRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 L G N+ +F + ++R F D+ ++ +VDD+L+ + SE + R +L++ Sbjct: 312 RLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSENDCQQGTRALLQI 371 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 L A K + + +LG+++ + + E V P TP ++R FL Sbjct: 372 LGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPIPKTPRQLREFLGT 431 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 A + R ++ FA ++APL LT+ F W ++++ +K L AP L LP+ + Sbjct: 432 AGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPF 491 Query: 50785 VIYCD-TSGVGLGCVLMQHG---KVIAYASRQL 50699 ++ D G G + + G + +AY S++L Sbjct: 492 ELFVDEKQGYAKGVLTQRLGPWRRPVAYLSKKL 524 Score = 39.1 bits (89), Expect = 6.1 Identities = 31/131 (23%), Positives = 57/131 (42%), Gaps = 1/131 (0%) Frame = -3 Query: 49863 VIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQK 49684 V +D + P + +A+ + + EI G+P + +D G F + ++ Sbjct: 937 VFVDTFSGWVEAFPTKKE-TAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVAD 995 Query: 49683 GLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFAYNNHYHS 49507 +G L + PQ+ G+ ER +T+++ L + ++ W LPL + N Sbjct: 996 LMGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARN-TPG 1054 Query: 49506 SIQMAPYEALYG 49471 + PYE LYG Sbjct: 1055 PHGLTPYEILYG 1066 >gb|AAB06450.1| (U63133) Gag-Pol polyprotein [Mus musculus] Length = 1734 Score = 105 bits (260), Expect = 5e-020 Identities = 90/375 (24%), Positives = 175/375 (46%), Gaps = 18/375 (4%) Frame = -2 Query: 51823 RVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAP 51644 R+H+ +AE + +FP + + I + + P+ I Y M+ Sbjct: 667 RLHETSAEPEASPGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQ 726 Query: 51643 AELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPL 51464 +K ++ LL++G + P SPW P+L V+K + ++ L +V + Sbjct: 727 EARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ--DLREVNKRVEDIH 784 Query: 51463 PRIDDLFDQLQGA----KCFSKIDLRSSYHEVRVREADIPKTAF-WTR-----YGHYDFR 51314 P + + ++ L G + ++ +DL+ ++ +R+ P AF W G + Sbjct: 785 PTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWGDPGMGISGQLTWT 844 Query: 51313 VLSFGMTNALAVFMDLMNRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 L G N+ +F + ++R F D+ ++ +VDD+L+ + SE + R +L+ Sbjct: 845 RLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQT 904 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 L + A K + + +LG+++ + + E V P TP ++R FL Sbjct: 905 LGNLGYRASAKKAQICQKQVKYLGYLLREGQRWLTEARKETVMGQPVPKTPRQLREFLGT 964 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 A + R ++ FA ++APL LT+ F W ++++ +K L AP L LP+ + Sbjct: 965 AGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPF 1024 Query: 50785 VIYCD-TSGVGLGCVLMQHG---KVIAYASRQL 50699 ++ D G G + + G + +AY S++L Sbjct: 1025 ELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKL 1057 Score = 43.4 bits (100), Expect = 0.31 Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 2/197 (1%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG-GLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 Y+ K + C+ C V K G G+ P WE+ + GL + Sbjct: 1407 YYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRPGTHWEIDFTEVKPGLYGYK 1466 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + V +D + P + +A + + EI G+P + SD G FT+ Sbjct: 1467 ----YLLVFVDTFSGWVEAFPTKRE-TARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQ 1521 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFA 49528 +S LG L + PQ+ G+ ER +T+++ L + ++ W LPL + Sbjct: 1522 VSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYR 1581 Query: 49527 YNNHYHSSIQMAPYEALYG 49471 N + PYE LYG Sbjct: 1582 ARN-TPGPHGLTPYEILYG 1599 Score = 41.0 bits (94), Expect = 1.6 Identities = 38/139 (27%), Positives = 63/139 (44%), Gaps = 5/139 (3%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFL----DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE 9216 F +P F +HR F DL + ++ D R +LQTL N Sbjct: 850 FKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLG 909 Query: 9217 *CVKFSK*EFCLKYVVFLGHIISGEGIR-VDKEKIESY*SFPRPIFPKNI*SFLALAYYY 9393 K + C K V +LG+++ EG R + + + E+ P P P+ + FL A + Sbjct: 910 YRASAKKAQICQKQVKYLGYLLR-EGQRWLTEARKETVMGQPVPKTPRQLREFLGTAGFC 968 Query: 9394 RRFVDRFSSISSPLTKIT*TKVQF 9465 R ++ F+ +++PL +T T F Sbjct: 969 RLWIPGFAEMAAPLYPLTKTGTLF 992 >gb|AAC46707.1| (U23171) Contains similarity to Pfam domain: PF00098 (zf-CCHC), Score=21.9, E-value=0.0021, N=1 [Caenorhabditis elegans] Length = 1268 Score = 105 bits (260), Expect = 5e-020 Identities = 85/313 (27%), Positives = 151/313 (48%), Gaps = 4/313 (1%) Frame = -2 Query: 51877 SYLKARKMVRKGYIYHLVRVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTI 51698 S+L +R + +V EA L+ V++ ++FP+VF EF Sbjct: 377 SWLNLCPQMRSALAQIVNQVSTSETEASRLE-VMLKNDFPEVFKDGLGLCTKEKA-EFRT 434 Query: 51697 DVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIRPST-SPWGAPVLFVRKKD-GSL 51524 + + P+F + L+ ++ +L L E G I P T + W AP++ ++KK G + Sbjct: 435 EE--NAVPVFKRARPVPYGSLEAVETELNRLQEMGVIVPITYAKWAAPIVVIKKKGTGKI 492 Query: 51523 QMSIEYK--QLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKT 51350 ++ ++K LN +PLP +D+F +L+G +S+IDL+ +Y +V + E Sbjct: 493 RVCADFKCSGLNAALKDEFHPLPTSEDIFSRLKGT-VYSQIDLKDAYLQVELDEEAQKLA 551 Query: 51349 AFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHAD 51170 T G + + ++FG+ A A F +M+++ V V+ DDI++ + S EEH Sbjct: 552 VINTHRGIFKYLRMTFGLKPAPASFQKIMDKMVSGLTG--VAVYWDDIIISASSIEEHEK 609 Query: 51169 HLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPT 50990 LR + + KC F + FLG + G R D++K EA+++ PT Sbjct: 610 ILRELFERFKEYGFRVSAEKCAFAQKQVTFLG-FVDEHGRRPDSKKTEAIRSMKAPTDQK 668 Query: 50989 EVRSFLELA*YYRRFVE 50939 ++ SFL A + R ++ Sbjct: 669 QLASFLGAADWLSRMMQ 685 Score = 84.7 bits (206), Expect = 1e-013 Identities = 64/216 (29%), Positives = 104/216 (47%), Gaps = 6/216 (2%) Frame = -3 Query: 50103 NPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGL--LQEIEIPTWKW 49930 +PG +M R +W G+ DI V C+NCQ E+ K + L +P W Sbjct: 794 HPGIVQMKQKARSFVFWRGLDSDIENMVRHCNNCQ----ENSKMPRVVPLNPWPVPEAPW 849 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 + I++DF L + V++D TK A R+ SA + L + EI +HG Sbjct: 850 KRIHIDFAGPLNGCY-----LLVVVDAKTKYAEVKLTRSI-SAVTTIDL-LEEIFSIHGY 902 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 P +IISD G Q T++ + + G + S ++P+++G +ER + D L+ I Sbjct: 903 PETIISDNGTQLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFV----DTLKRGIAKI 958 Query: 49569 KGSWDDHLPLIE---FAYNNHYHSSIQ-MAPYEALYGRKCRS 49456 KG + ++ +Y N HS++ P E +GRK R+ Sbjct: 959 KGEGSVNQQILNKFLISYRNTPHSALNGSTPAECHFGRKIRT 1000 >gb|AAB64160.1| (AF010170) Pol [synthetic construct] Length = 1199 Score = 105 bits (259), Expect = 7e-020 Identities = 89/375 (23%), Positives = 174/375 (45%), Gaps = 18/375 (4%) Frame = -2 Query: 51823 RVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAP 51644 R+H+ + E + +FP + + I + + P+ I Y M+ Sbjct: 129 RLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQ 188 Query: 51643 AELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPL 51464 +K ++ LL++G + P SPW P+L V+K + ++ L +V + Sbjct: 189 EARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ--DLREVNKRVEDIH 246 Query: 51463 PRIDDLFDQLQGA----KCFSKIDLRSSYHEVRVREADIPKTAFWTR------YGHYDFR 51314 P + + ++ L G + ++ +DL+ ++ +R+ P AF R G + Sbjct: 247 PTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWT 306 Query: 51313 VLSFGMTNALAVFMDLMNRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 L G N+ +F + ++R F D+ ++ +VDD+L+ + SE + R +L+ Sbjct: 307 RLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQT 366 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 L + A K + + +LG+++ + + E V P TP ++R FL Sbjct: 367 LGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGT 426 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 A + R ++ FA ++APL LT+ F W ++++ +K L AP L LP+ + Sbjct: 427 AGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPF 486 Query: 50785 VIYCD-TSGVGLGCVLMQHG---KVIAYASRQL 50699 ++ D G G + + G + +AY S++L Sbjct: 487 ELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKL 519 Score = 42.2 bits (97), Expect = 0.70 Identities = 38/139 (27%), Positives = 63/139 (44%), Gaps = 5/139 (3%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFL----DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE 9216 F +P F +HR F DL + ++ D R +LQTL N Sbjct: 312 FKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLG 371 Query: 9217 *CVKFSK*EFCLKYVVFLGHIISGEGIR-VDKEKIESY*SFPRPIFPKNI*SFLALAYYY 9393 K + C K V +LG+++ EG R + + + E+ P P P+ + FL A + Sbjct: 372 YRASAKKAQICQKQVKYLGYLLK-EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFC 430 Query: 9394 RRFVDRFSSISSPLTKIT*TKVQF 9465 R ++ F+ +++PL +T T F Sbjct: 431 RLWIPGFAEMAAPLYPLTKTGTLF 454 Score = 39.5 bits (90), Expect = 4.6 Identities = 29/112 (25%), Positives = 51/112 (44%), Gaps = 1/112 (0%) Frame = -3 Query: 49806 SAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGK 49627 +A+ + + EI G+P + +D G F + ++ LG L + PQ+ G+ Sbjct: 950 TAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQ 1009 Query: 49626 SERTIQTLEDML-RASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 ER +T+++ L + ++ W LPL + N + PYE LYG Sbjct: 1010 VERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARN-TPGPHGLTPYEILYG 1061 >gb|AAB03091.1| (J01998) gag-pol polyprotein (tag amber codon at 2250-2252 inserts Gln in Mo-MuLV) [AKV murine leukemia virus] Length = 1734 Score = 105 bits (259), Expect = 7e-020 Identities = 90/375 (24%), Positives = 174/375 (46%), Gaps = 18/375 (4%) Frame = -2 Query: 51823 RVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAP 51644 R+++ +AE + +FP + + I + + P+ I Y M+ Sbjct: 667 RLYETSAEPEVSPGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQ 726 Query: 51643 AELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPL 51464 +K ++ LL++G + P SPW P+L V+K + ++ L +V + Sbjct: 727 EAKLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ--DLREVNKRVEDIH 784 Query: 51463 PRIDDLFDQLQGA----KCFSKIDLRSSYHEVRVREADIPKTAFWTR------YGHYDFR 51314 P + + ++ L G + ++ +DL+ ++ +R+ P AF R G + Sbjct: 785 PTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGMGISGQLTWT 844 Query: 51313 VLSFGMTNALAVFMDLMNRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 L G N+ +F + ++R F D+ ++ +VDDIL+ + SE + R +L Sbjct: 845 RLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLT 904 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 L + A K + + +LG+++ + + E V P TP ++R FL Sbjct: 905 LGNLGYRASAKKAQLCQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGT 964 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 A + R ++ FA ++APL LT+ F W ++++ +K L AP L LP+ + Sbjct: 965 AGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPF 1024 Query: 50785 VIYCD-TSGVGLGCVLMQHG---KVIAYASRQL 50699 ++ D G G + + G + +AY S++L Sbjct: 1025 ELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKL 1057 Score = 43.0 bits (99), Expect = 0.41 Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 2/197 (1%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG-GLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 Y+ K + C+ C V K G G+ P WE+ + GL + Sbjct: 1407 YYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRPGSHWEIDFTEVKPGLYGYK 1466 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + V +D + P + +A + + EI G+P + SD G FT+ Sbjct: 1467 ----YLLVFVDTFSGWVEAFPTKRE-TARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQ 1521 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFA 49528 +S LG L + PQ+ G+ ER +T+++ L + ++ W LPL + Sbjct: 1522 VSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYR 1581 Query: 49527 YNNHYHSSIQMAPYEALYG 49471 N + PYE LYG Sbjct: 1582 ARN-TPGPHGLTPYEILYG 1599 Score = 39.5 bits (90), Expect = 4.6 Identities = 37/139 (26%), Positives = 62/139 (43%), Gaps = 5/139 (3%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFL----DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE 9216 F +P F +HR F DL + ++ D R +L TL N Sbjct: 850 FKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLTLGNLG 909 Query: 9217 *CVKFSK*EFCLKYVVFLGHIISGEGIR-VDKEKIESY*SFPRPIFPKNI*SFLALAYYY 9393 K + C K V +LG+++ EG R + + + E+ P P P+ + FL A + Sbjct: 910 YRASAKKAQLCQKQVKYLGYLLK-EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFC 968 Query: 9394 RRFVDRFSSISSPLTKIT*TKVQF 9465 R ++ F+ +++PL +T T F Sbjct: 969 RLWIPGFAEMAAPLYPLTKTGTLF 992 >gb|AAC82568.1| (AF033811) Pr180 [Moloney murine leukemia virus] Length = 1737 Score = 105 bits (259), Expect = 7e-020 Identities = 89/375 (23%), Positives = 174/375 (45%), Gaps = 18/375 (4%) Frame = -2 Query: 51823 RVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAP 51644 R+H+ + E + +FP + + I + + P+ I Y M+ Sbjct: 667 RLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQ 726 Query: 51643 AELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPL 51464 +K ++ LL++G + P SPW P+L V+K + ++ L +V + Sbjct: 727 EARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ--DLREVNKRVEDIH 784 Query: 51463 PRIDDLFDQLQGA----KCFSKIDLRSSYHEVRVREADIPKTAFWTR------YGHYDFR 51314 P + + ++ L G + ++ +DL+ ++ +R+ P AF R G + Sbjct: 785 PTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWT 844 Query: 51313 VLSFGMTNALAVFMDLMNRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 L G N+ +F + ++R F D+ ++ +VDD+L+ + SE + R +L+ Sbjct: 845 RLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQT 904 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 L + A K + + +LG+++ + + E V P TP ++R FL Sbjct: 905 LGNLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGT 964 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 A + R ++ FA ++APL LT+ F W ++++ +K L AP L LP+ + Sbjct: 965 AGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPF 1024 Query: 50785 VIYCD-TSGVGLGCVLMQHG---KVIAYASRQL 50699 ++ D G G + + G + +AY S++L Sbjct: 1025 ELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKL 1057 Score = 42.2 bits (97), Expect = 0.70 Identities = 38/139 (27%), Positives = 63/139 (44%), Gaps = 5/139 (3%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFL----DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE 9216 F +P F +HR F DL + ++ D R +LQTL N Sbjct: 850 FKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLG 909 Query: 9217 *CVKFSK*EFCLKYVVFLGHIISGEGIR-VDKEKIESY*SFPRPIFPKNI*SFLALAYYY 9393 K + C K V +LG+++ EG R + + + E+ P P P+ + FL A + Sbjct: 910 YRASAKKAQICQKQVKYLGYLLK-EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFC 968 Query: 9394 RRFVDRFSSISSPLTKIT*TKVQF 9465 R ++ F+ +++PL +T T F Sbjct: 969 RLWIPGFAEMAAPLYPLTKTGTLF 992 Score = 39.9 bits (91), Expect = 3.5 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 1/131 (0%) Frame = -3 Query: 49863 VIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQK 49684 V ID + P + +A+ + + EI G+P + +D G F + ++ Sbjct: 1470 VFIDTFSGWIEAFPTKKE-TAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVAD 1528 Query: 49683 GLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFAYNNHYHS 49507 LG L + PQ+ G+ ER +T+++ L + ++ W LPL + N Sbjct: 1529 LLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARN-TPG 1587 Query: 49506 SIQMAPYEALYG 49471 + PYE LYG Sbjct: 1588 PHGLTPYEILYG 1599 >gb|AAD34536.1| (AF136491) polymerase [Murine leukemia virus] Length = 1180 Score = 104 bits (258), Expect = 9e-020 Identities = 93/375 (24%), Positives = 178/375 (46%), Gaps = 19/375 (5%) Frame = -2 Query: 51823 RVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAP 51644 R+++ +AE + +FP + + I + + P+ I Y M+ Sbjct: 129 RLYETSAEPEASPGSTWLSDFPQAWAETGGMGLAVRRRPLIIPLNATSTPVSIKQYPMSQ 188 Query: 51643 AELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPL 51464 +K ++ LL++G + P SPW P L V+K + ++ L +V + Sbjct: 189 EARLGIKPHIQRLLDQGILVPCQSPWNTPCLPVKKPGTNDYRPVQ--DLREVNKRVEDIH 246 Query: 51463 PRIDDLFDQLQGA----KCFSKIDLRSSYHEVRVREADIPKTAFWTR------YGHYDFR 51314 P + + ++ L G + ++ +DL+ ++ +R+ P AF R G + Sbjct: 247 PTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGMGISGQLTWT 306 Query: 51313 VLSFGMTNALAVFMDLMNRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 L G N+ +F + ++R F D+ ++ +VDDIL+ + SE + R +L Sbjct: 307 RLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLT 366 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQ-KIEAVKTWTRPTTPTEVRSFLE 50969 L + A K + + +LG+++ +G R T+ + E V+ P TP ++R FL Sbjct: 367 LGNLGYRASAKKAQLCQKQVKYLGYLL-REGQRCLTEARKETVRGQPTPKTPRQLREFLG 425 Query: 50968 LA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDG 50789 A + R ++ FA ++APL LT+ F W ++++ +K L AP L LP+ Sbjct: 426 TAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKP 485 Query: 50788 YVIYCD-TSGVGLGCVLMQHG---KVIAYASRQL 50699 + ++ D G G + + G + +AY S++L Sbjct: 486 FELFVDEKQGYAKGSLTQKLGPWRRPVAYLSKKL 519 Score = 45.7 bits (106), Expect = 0.062 Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 2/197 (1%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG-GLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 Y+ K + C+ C V K G G+ P WE+ + GL + Sbjct: 868 YYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRPGTHWEIDFTEVKPGLYGYK 927 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + V +D + P + +A+ + + +I G+P + SD G FT+ Sbjct: 928 ----YLLVFVDTFSGWVEAFPTKRE-TAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFTSQ 982 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFA 49528 +S K LG L + PQ+ G+ ER +T+++ L + ++ W LPL + Sbjct: 983 VTQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYR 1042 Query: 49527 YNNHYHSSIQMAPYEALYG 49471 N + PYE LYG Sbjct: 1043 ARN-TPGPHGLTPYEILYG 1060 Score = 39.1 bits (89), Expect = 6.1 Identities = 37/139 (26%), Positives = 62/139 (43%), Gaps = 5/139 (3%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFL----DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE 9216 F +P F +HR F DL + ++ D R +L TL N Sbjct: 312 FKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLTLGNLG 371 Query: 9217 *CVKFSK*EFCLKYVVFLGHIISGEGIR-VDKEKIESY*SFPRPIFPKNI*SFLALAYYY 9393 K + C K V +LG+++ EG R + + + E+ P P P+ + FL A + Sbjct: 372 YRASAKKAQLCQKQVKYLGYLLR-EGQRCLTEARKETVRGQPTPKTPRQLREFLGTAGFC 430 Query: 9394 RRFVDRFSSISSPLTKIT*TKVQF 9465 R ++ F+ +++PL +T T F Sbjct: 431 RLWIPGFAEMAAPLYPLTKTGTLF 454 >gb|AAC80264.1| (U60065) pol polyprotein [Gibbon ape leukemia virus] Length = 1127 Score = 104 bits (257), Expect = 1e-019 Identities = 96/403 (23%), Positives = 185/403 (45%), Gaps = 16/403 (3%) Frame = -2 Query: 51763 FPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIR 51584 FP V+ +++ P+ + Y M+ + ++ ++ L+ G + Sbjct: 108 FPTVWAERAGMGLANRVPPVVVELKSGASPVAVRQYPMSKEAREGIRPHIQRFLDLGVLV 167 Query: 51583 PSTSPWGAPVLFVRKKDGSLQMSIE-YKQLNKVTVKNRYPLPRIDDLFDQLQGAKC-FSK 51410 P SPW P+L V+K + ++ +++NK +P +L L + +S Sbjct: 168 PCRSPWNTPLLPVKKPGTNDYRPVQDLREINKRVQDIHPTVPNPYNLLSSLPPSHTWYSV 227 Query: 51409 IDLRSSYHEVRVREADIPKTAF-WT-----RYGHYDFRVLSFGMTNALAVFMDLMNRVFK 51248 +DL+ ++ +++ AF W G + L G N+ +F + ++R Sbjct: 228 LDLKDAFFCLKLHPNSQSLFAFEWKDPEKGNTGQLTWTRLPQGFKNSPTLFDEALHRDLA 287 Query: 51247 PFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAF 51080 F + ++ +VDD+LV + + ++ + + +L+ L K + + + Sbjct: 288 LFRAHNPQVKLLQYVDDLLVAAPTYQDCKEGTQKLLQELSKLGYRVSAKKAQLCQKEVTY 347 Query: 51079 LGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLT 50900 LG+++ + + V PTTP +VR FL A + R ++ FA ++APL LT Sbjct: 348 LGYLLKEGKRWLTPARKATVMKIPAPTTPRQVREFLGTAGFCRLWIPGFASMAAPLYPLT 407 Query: 50899 QKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD-TSGVGLGCVLMQHG-- 50729 +++ F WT +++F L+K L AP L LP+ + +Y D +GV G + G Sbjct: 408 KESIPFIWTEEHQKAFDLIKKALLSAPALALPDLTKPFTLYVDERAGVARGVLTQTLGPW 467 Query: 50728 -KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQ 50555 + +AY S++L + +PT + V LK G +V + H SL+ I +Q Sbjct: 468 RRPVAYLSKKLDPVASGWPTCLKAVAAVALLLKDADKLTLGQNVTVIASH-SLESIVRQ 525 Score = 48.8 bits (114), Expect(2) = 1e-004 Identities = 52/213 (24%), Positives = 84/213 (39%), Gaps = 2/213 (0%) Frame = -3 Query: 50046 MKKDIAEFVAQCSNCQ*VK-IEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DS 49870 ++ + E +QC C + + G Q + P WE+ + G + Sbjct: 803 LQSAVREVTSQCQACAMTNTVTTYRETGKRQRGDRPGVYWEVDFTEIKPGRYGNR----Y 858 Query: 49869 IWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSF 49690 + V ID + P +T +A + + EI+ G+P + SD G F + Sbjct: 859 LLVFIDTFSGWVEAFPTKTE-TALTVCKKILEEILPRFGIPKVLGSDNGPAFVAQVSQGL 917 Query: 49689 QKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKG-SWDDHLPLIEFAYNNHY 49513 LG L + PQ+ G+ ER +T+++ L ++ G W LPL N Sbjct: 918 ATQLGINWKLHCAYRPQSSGQVERMNRTIKETLIKLALETGGKDWVTLLPLALLRARN-T 976 Query: 49512 HSSIQMAPYEALYGRKCRSPIGWFDVGETKLIGPD 49408 + PYE LYG P + GET + PD Sbjct: 977 PGRFGLTPYEILYG----GPPPILESGET--LNPD 1005 Score = 25.1 bits (53), Expect(2) = 1e-004 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -1 Query: 49304 FQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIV 49194 FQ+GD V ++R R L PR+ GPY ++ Sbjct: 1045 FQVGDQV---------LVRRHRPSSLEPRWKGPYLVL 1072 >gb|AAF71197.1| (AF182205) pol protein integrase region [Pinus brutia] Length = 131 Score = 102 bits (253), Expect = 4e-019 Identities = 55/132 (41%), Positives = 78/132 (58%) Frame = -3 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 E ++MDFITGLP+++ K I V++DRLTK AHF + + A ++ I +LHG Sbjct: 1 EKVSMDFITGLPKSEGK-SVIMVVVDRLTKYAHFCALSHPFRASTVSTAFMETIQKLHGN 59 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 P I+S R FT NFW LGTQ+ S+++HPQ+DG++E + LE LR + D Sbjct: 60 PKIIVSHRDPIFTGNFWTELFSCLGTQLAHSSSYHPQSDGQTEIVKKCLEGYLRCFVSDK 119 Query: 49569 KGSWDDHLPLIE 49534 + W LPL E Sbjct: 120 QTQWVKWLPLAE 131 Score = 57.4 bits (136), Expect = 2e-005 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Frame = +2 Query: 10391 EIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGF 10570 E ++MDFI S + + I V+VDRLTK +HF +S A + +++ +++LHG Sbjct: 1 EKVSMDFITGLPKSEGK-SVIMVVVDRLTKYAHFCALSHPFRASTVSTAFMETIQKLHGN 59 Query: 10571 LVFIISNRSAYFTAQLWKSFQKSQGSKL-N*VLLFILKEVEKQCTIKTLEYMLRACVIDF 10747 I+S+R FT W G++L + + + + K LE LR V D Sbjct: 60 PKIIVSHRDPIFTGNFWTELFSCLGTQLAHSSSYHPQSDGQTEIVKKCLEGYLRCFVSDK 119 Query: 10748 KVNWDDNMPLIE 10783 + W +PL E Sbjct: 120 QTQWVKWLPLAE 131 >gb|AAF71149.1| (AF152539) pol protein integrase region [Abies alba] Length = 131 Score = 102 bits (252), Expect = 5e-019 Identities = 53/132 (40%), Positives = 78/132 (58%) Frame = -3 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 E ++MDFITGLP+++ K I ++DRLTK AHF + + A ++ + +LHG Sbjct: 1 EKVSMDFITGLPKSEGK-SVIMAVVDRLTKYAHFCALSHPFKASTVATTFMETVQKLHGN 59 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 P I+SDR FT +FW LGTQ+ S+++HPQ+DG++E + LE LR + D Sbjct: 60 PKIIVSDRDPIFTGHFWTELFSCLGTQLAHSSSYHPQSDGQTEIVNKCLEGYLRCFVSDK 119 Query: 49569 KGSWDDHLPLIE 49534 + W LPL E Sbjct: 120 QTQWVRWLPLAE 131 Score = 57.0 bits (135), Expect = 2e-005 Identities = 41/131 (31%), Positives = 63/131 (47%), Gaps = 1/131 (0%) Frame = +2 Query: 10391 EIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGF 10570 E ++MDFI S + + I +VDRLTK +HF +S A A +++ V++LHG Sbjct: 1 EKVSMDFITGLPKSEGK-SVIMAVVDRLTKYAHFCALSHPFKASTVATTFMETVQKLHGN 59 Query: 10571 LVFIISNRSAYFTAQLWKSFQKSQGSKL-N*VLLFILKEVEKQCTIKTLEYMLRACVIDF 10747 I+S+R FT W G++L + + + + K LE LR V D Sbjct: 60 PKIIVSDRDPIFTGHFWTELFSCLGTQLAHSSSYHPQSDGQTEIVNKCLEGYLRCFVSDK 119 Query: 10748 KVNWDDNMPLIE 10783 + W +PL E Sbjct: 120 QTQWVRWLPLAE 131 >gb|AAA28946.1| (M37656) ORF2 [Drosophila ananassae] Length = 132 Score = 102 bits (252), Expect = 5e-019 Identities = 46/127 (36%), Positives = 76/127 (59%) Frame = -2 Query: 51265 MNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSL 51086 MN + +P ++ +V++DD++++S S +EH + L+ V L L KCEF Sbjct: 4 MNNILRPLINKHCLVYLDDMIIFSTSLDEHLNSLQLVFEKLSESNLKLQLDKCEFLKKEA 63 Query: 51085 AFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIR 50906 FLGHI+ DGI+ + K+EA+ ++ PT E+R+FL + YYR+F+ +A I+ P+ R Sbjct: 64 TFLGHIVTPDGIKPNPLKVEAIASYPIPTKVKEIRAFLGMTGYYRKFIPSYADIAKPMTR 123 Query: 50905 LTQKAAK 50885 +K AK Sbjct: 124 YLKKGAK 130 Score = 71.8 bits (173), Expect = 9e-010 Identities = 34/120 (28%), Positives = 66/120 (54%) Frame = +1 Query: 9082 MHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYV 9261 M+ + +P ++ +S + ++H + L++V + L ++ K EF K Sbjct: 4 MNNILRPLINKHCLVYLDDMIIFSTSLDEHLNSLQLVFEKLSESNLKLQLDKCEFLKKEA 63 Query: 9262 VFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVDRFSSISSPLTK 9441 FLGHI++ +GI+ + K+E+ S+P P K I +FL + YYR+F+ ++ I+ P+T+ Sbjct: 64 TFLGHIVTPDGIKPNPLKVEAIASYPIPTKVKEIRAFLGMTGYYRKFIPSYADIAKPMTR 123 >emb|CAB53560.1| (AJ006557) reverse transcriptase [Anopheles funestus] Length = 361 Score = 101 bits (250), Expect = 8e-019 Identities = 51/164 (31%), Positives = 92/164 (56%) Frame = -2 Query: 51793 TLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQL 51614 T++ + VV+E+ DVF ++ L +P+++ P ++ A L E + Sbjct: 192 TVRLIKVVNEYRDVFALNIKELGCAKSTAISLK-LTQIEPVYVKPRKLEYAREIMLNEMV 250 Query: 51613 RDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQL 51434 +LLE I+ + SP+ +P++ V KK+G +M+I+Y+ LN TVK+++P+P ++ +L Sbjct: 251 EELLEAEVIKETDSPYNSPIVLVPKKNGRFRMAIDYRMLNAKTVKDKFPMPDLEQCLQRL 310 Query: 51433 QGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSF 51302 GAK + +DL S Y+++ V + TAF T GH+ F + F Sbjct: 311 SGAKMYITLDLFSGYYQIPVHQDSQDYTAFSTPSGHFKFTRMPF 354 >gb|AAF71147.1| (AF152537) pol protein integrase region [Abies alba] Length = 131 Score = 101 bits (248), Expect = 1e-018 Identities = 53/132 (40%), Positives = 78/132 (58%) Frame = -3 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 E ++MDFITGLP+ + K I V++DRLTK AHF + + A ++ + +LHG Sbjct: 1 EKVSMDFITGLPKPEGK-SVIMVVVDRLTKYAHFCALSHPFKASTVATHFMETVQKLHGN 59 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 P I+SDR FT +FW LGTQ+ S+++HPQ+DG++E + LE LR + + Sbjct: 60 PKIIVSDRDPIFTGHFWTELFSCLGTQLAHSSSYHPQSDGQTEIVNKGLEGYLRCYVSNK 119 Query: 49569 KGSWDDHLPLIE 49534 + W LPL E Sbjct: 120 QAQWVRWLPLAE 131 Score = 53.9 bits (127), Expect = 2e-004 Identities = 40/131 (30%), Positives = 62/131 (46%), Gaps = 1/131 (0%) Frame = +2 Query: 10391 EIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGF 10570 E ++MDFI + I V+VDRLTK +HF +S A A +++ V++LHG Sbjct: 1 EKVSMDFITGLP-KPEGKSVIMVVVDRLTKYAHFCALSHPFKASTVATHFMETVQKLHGN 59 Query: 10571 LVFIISNRSAYFTAQLWKSFQKSQGSKL-N*VLLFILKEVEKQCTIKTLEYMLRACVIDF 10747 I+S+R FT W G++L + + + + K LE LR V + Sbjct: 60 PKIIVSDRDPIFTGHFWTELFSCLGTQLAHSSSYHPQSDGQTEIVNKGLEGYLRCYVSNK 119 Query: 10748 KVNWDDNMPLIE 10783 + W +PL E Sbjct: 120 QAQWVRWLPLAE 131 >emb|CAB81136.1| (AL161506) putative athila transposon protein [Arabidopsis thaliana] Length = 724 Score = 101 bits (248), Expect = 1e-018 Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 20/228 (8%) Frame = -2 Query: 51667 IPPYRMAPAELKEL-KEQLRDLLEKGFIRP-STSPWGAPVLFVRKKDGSL---------- 51524 I P R LKE+ K+++ LL+ G I P S S W PV V KK G Sbjct: 351 IEPQRRLNLNLKEVVKKEILKLLDAGVIYPISDSTWVFPVHCVPKKGGMTVVKNEKDELI 410 Query: 51523 --------QMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVRE 51368 ++ I+Y++LN + K+ +PLP + + + L +D S + ++ + Sbjct: 411 PTRTITGHRVCIDYRKLNAASRKDHFPLPFTNQMLEGLANHLYNCFLDGYSGFFQIPIHP 470 Query: 51367 ADIPKTAFWTRYGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRS 51188 D KT F YG + ++ + FG+ NA F M +F ++ V VF+DD VY S Sbjct: 471 NDQEKTTFTCPYGTFAYKRMPFGLCNAPTTFQRCMTSIFSDLIEKMVEVFMDDFSVYGPS 530 Query: 51187 EEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWT 51008 +L VL + L + KC F + LGH I GI VD +KI+ + Sbjct: 531 FSSCLLNLGRVLTKWEETNLVLNWEKCYFMVKEGIVLGHKISEKGIEVDKEKIKVMMQLQ 590 Query: 51007 RPTTPTEV 50984 P T ++ Sbjct: 591 PPKTVKDI 598 Score = 66.7 bits (160), Expect = 3e-008 Identities = 41/112 (36%), Positives = 65/112 (57%), Gaps = 3/112 (2%) Frame = -2 Query: 50728 KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQKE 50549 K I YASR L + + Y T + +L +VV A K +R YL V +YTDH +L++++ +K+ Sbjct: 596 KDIYYASRTLDEAQGRYATTEKELLVVVFAFKKFRSYLVESKVTVYTDHAALRHMYAKKD 655 Query: 50548 LYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSMGS---LTDVQPEMREMV 50393 R R + LL+++D++I+ G N D LSR + + D PE + MV Sbjct: 656 TKPRLLRGILLLQEFDMEIVEKKGIENGAADHLSRMRIEEPILIDDSMPEEQLMV 710 Score = 36.7 bits (83), Expect(2) = 0.051 Identities = 32/117 (27%), Positives = 45/117 (38%) Frame = +1 Query: 9058 APAAFMVLMHRVFKPFLDLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE*CVKFSK 9237 AP F M +F ++ Y + +L VL + + K Sbjct: 497 APTTFQRCMTSIFSDLIEKMVEVFMDDFSVYGPSFSSCLLNLGRVLTKWEETNLVLNWEK 556 Query: 9238 *EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*SFLALAYYYRRFVD 9408 F +K + LGH IS +GI VDKEKI+ P K+I YY R +D Sbjct: 557 CYFMVKEGIVLGHKISEKGIEVDKEKIKVMMQLQPPKTVKDI-------YYASRTLD 606 Score = 28.2 bits (61), Expect(2) = 0.051 Identities = 17/69 (24%), Positives = 28/69 (39%) Frame = +2 Query: 8825 RICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXXXNINLRSGCHKMKVRECDVPKTNF 9004 R+CIDY + N + K +PL ++ SG ++ + D KT F Sbjct: 419 RVCIDYRKLNAASRKDHFPLPFTNQMLEGLANHLYNCFLDGYSGFFQIPIHPNDQEKTTF 478 Query: 9005 IKRYGHYLF 9031 YG + + Sbjct: 479 TCPYGTFAY 487 >gb|AAC16764.1| (AF038600) pol protein [Sus scrofa] Length = 1145 Score = 100 bits (247), Expect = 2e-018 Identities = 94/406 (23%), Positives = 189/406 (46%), Gaps = 17/406 (4%) Frame = -2 Query: 51772 VDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKG 51593 +++FP + I + P+ + Y ++ + ++ ++ L+++G Sbjct: 95 LEQFPQAWAETAGMGLAKQVPPQVIQLKASATPVSVRQYPLSKEAQEGIRPHVQRLIQQG 154 Query: 51592 FIRPSTSPWGAPVLFVRKKDGSLQMSIE-YKQLNKVTVKNRYPLPRIDDLFDQLQGAKC- 51419 + P SPW P+L VRK + ++ +++NK +P +L L + Sbjct: 155 ILVPVQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVQDIHPTVPNPYNLLCALPPQRSW 214 Query: 51418 FSKIDLRSSYHEVRVREADIPKTAF-WT-----RYGHYDFRVLSFGMTNALAVFMDLMNR 51257 ++ +DL+ ++ +R+ P AF W R G + L G N+ +F + ++R Sbjct: 215 YTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIFDEALHR 274 Query: 51256 VFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTS 51089 F + ++ +VDD+L+ ++++ + + +L L A K + Sbjct: 275 DLANFRIQHPQVTLLQYVDDLLLAGATKQDCLEGTKALLLELSDLGYRASAKKAQICRRE 334 Query: 51088 LAFLGHIIGADGIRVDTQ-KIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPL 50912 + +LG+ + DG R T+ + + V PTT ++R FL A + R ++ FA ++APL Sbjct: 335 VTYLGYSL-RDGQRWLTEARKKTVVQIPAPTTAKQMREFLGTAGFCRLWIPGFATLAAPL 393 Query: 50911 IRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD-TSGVGLGCVLMQ 50735 LT++ +F W +++F +K L AP L LP+ + +Y D GV G + Sbjct: 394 YPLTKEKGEFSWAPEHQKAFDAIKKALLSAPALALPDVTKPFTLYVDERKGVARGVLTQT 453 Query: 50734 HG---KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYI 50564 G + +AY S++L + +P + V +K G ++ + H +L+ I Sbjct: 454 LGPWRRPVAYLSKKLDPVASGWPICLKAIAAVAILVKDADKLTLGQNITVIAPH-ALENI 512 Query: 50563 FKQ 50555 +Q Sbjct: 513 VRQ 515 Score = 46.1 bits (107), Expect = 0.047 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 1/103 (0%) Frame = -3 Query: 49779 VREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLE 49600 + EI G+P I SD G F + + K LG L + PQ+ G+ ER +T++ Sbjct: 903 LEEIFPRFGIPKVIGSDNGPAFVAHVSQGLAKILGIDWKLHCAYRPQSSGQVERMNRTIK 962 Query: 49599 DML-RASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 + L + + W LP + F N + PYE LYG Sbjct: 963 ETLTKLTAETGVNDWIALLPFVLFRVRN-TPGQFGLTPYELLYG 1005 >gb|AAA92679.1| (U13766) gag-pol polyprotein [Murine leukemia virus] Length = 1736 Score = 100 bits (247), Expect = 2e-018 Identities = 87/375 (23%), Positives = 170/375 (45%), Gaps = 17/375 (4%) Frame = -2 Query: 51823 RVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAP 51644 R+H+ + E + +FP + + I + + P+ I Y M+ Sbjct: 667 RLHETSTEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSH 726 Query: 51643 AELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPL 51464 +K ++ LL++G + P SPW P+L V+K ++ L +V + Sbjct: 727 EARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTKDYRPVQ--DLREVNKRVEDIH 784 Query: 51463 PRIDDLFDQLQGA----KCFSKIDLRSSYHEVRVREADIPKTAFWTR------YGHYDFR 51314 P + + ++ L G + ++ +DL+ ++ +R+ P AF R G + Sbjct: 785 PTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWT 844 Query: 51313 VLSFGMTNALAVFMDLMNRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 L G N+ +F + ++R F D+ ++ +VDD+L+ + SE + R +L+ Sbjct: 845 RLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQT 904 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 L A K + + +LG+++ + + E V P TP ++R FL Sbjct: 905 LGDLGYRASAKKAQICQKQVKYLGYLLREGQRWLTEARKETVMGQPVPKTPRQLREFLGT 964 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 A + R ++ FA ++APL LT+ F W ++++ +K L AP L LP+ + Sbjct: 965 AGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPF 1024 Query: 50785 VIYCDTSGVGLGCVLMQHG---KVIAYASRQL 50699 ++ D + + G + +AY S++L Sbjct: 1025 ELFVDEKQGYAKALTQKLGPWRRPVAYLSKKL 1056 Score = 43.0 bits (99), Expect = 0.41 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 1/103 (0%) Frame = -3 Query: 49779 VREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLE 49600 + EI G+P + SD G FT+ +S LG L + PQ+ G+ ER +T++ Sbjct: 1496 LEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIK 1555 Query: 49599 DML-RASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 + L + ++ W LPL + N + PYE LYG Sbjct: 1556 ETLTKLTLATGTRDWVLLLPLALYRARN-TPGPHGLTPYEILYG 1598 Score = 39.1 bits (89), Expect = 6.1 Identities = 37/139 (26%), Positives = 63/139 (44%), Gaps = 5/139 (3%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFL----DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE 9216 F +P F +HR F DL + ++ D R +LQTL + Sbjct: 850 FKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLG 909 Query: 9217 *CVKFSK*EFCLKYVVFLGHIISGEGIR-VDKEKIESY*SFPRPIFPKNI*SFLALAYYY 9393 K + C K V +LG+++ EG R + + + E+ P P P+ + FL A + Sbjct: 910 YRASAKKAQICQKQVKYLGYLLR-EGQRWLTEARKETVMGQPVPKTPRQLREFLGTAGFC 968 Query: 9394 RRFVDRFSSISSPLTKIT*TKVQF 9465 R ++ F+ +++PL +T T F Sbjct: 969 RLWIPGFAEMAAPLYPLTKTGTLF 992 >gb|AAC47272.1| (U09586) integrase [Tribolium castaneum] Length = 470 Score = 92.4 bits (226), Expect(2) = 2e-018 Identities = 67/240 (27%), Positives = 115/240 (47%) Frame = -3 Query: 50097 GSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMIN 49918 G+TK+Y+ ++ Y+W M + I + + C CQ K ++ G L I + +++ Sbjct: 144 GATKVYNSMKREYYWPNMYRTIKKRLRSCDLCQKTKSSNRPHQGPLTPI-LYDHIGDLVC 202 Query: 49917 MDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSI 49738 +DF LP + ++V+ID +K P+R + RL E + P + Sbjct: 203 VDFYGPLPTGRLGASYVFVVIDVFSKFLKLYPLRKATAKIAAKRLI--EDFSGYIKPKCV 260 Query: 49737 ISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSW 49558 +SD G QF +N W++ + Q LS+ HP+++ SER ++ L + RA + SW Sbjct: 261 LSDHGTQFISNTWQNSLRAADIQPTLSSIRHPESN-PSERVMRELGRIFRAYCRENHASW 319 Query: 49557 DDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSPIGWFDVGETKLIGPDMIQQVVDKVK 49378 +HL IE N H S +PYE LYGR +P+ G + P +++ +K + Sbjct: 320 VNHLSNIEDCLNYVPHISTGFSPYEILYGRTPPNPLDAVTSGLLPVRPPLTREEIHEKAR 379 Score = 28.6 bits (62), Expect(2) = 2e-018 Identities = 17/54 (31%), Positives = 26/54 (47%) Frame = -1 Query: 49301 QIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYELDLPSDLEV 49140 +I DWV LK + + R + K P Y GPY+I+ Y++ P E+ Sbjct: 401 EIEDWVLLK-NKVTSDTRTHQFAKFMPLYSGPYKIIAKPHPNTYQIADPVTNEI 453 >gb|AAA79247.1| (M87550) reverse transcriptase [Murine leukemia virus] Length = 1038 Score = 100 bits (246), Expect = 2e-018 Identities = 84/326 (25%), Positives = 158/326 (47%), Gaps = 18/326 (5%) Frame = -2 Query: 51676 PIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQL 51497 P+ I Y M+ +K ++ LL++G + P SPW P+L V+K + ++ L Sbjct: 20 PVSIKQYPMSQEAKLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQ--DL 77 Query: 51496 NKVTVKNRYPLPRIDDLFDQLQGA----KCFSKIDLRSSYHEVRVREADIPKTAFWTR-- 51335 +V + P + + ++ L G + ++ +DL+ ++ +R+ P AF R Sbjct: 78 REVNKRVEDIHPTVPNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDP 137 Query: 51334 ----YGHYDFRVLSFGMTNALAVFMDLMNRVFKPFL----DMFVIVFVDDILVYSRSEEE 51179 G + L G N+ +F + ++R F D+ ++ +VDDIL+ + SE + Sbjct: 138 GMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELD 197 Query: 51178 HADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPT 50999 R +L L + A K + + +LG+++ + + E V P Sbjct: 198 CQQGTRALLLTLGNLGYRASAKKAQLCQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPK 257 Query: 50998 TPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAP 50819 TP ++R FL A + R ++ FA ++APL LT+ F W ++++ +K L AP Sbjct: 258 TPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAP 317 Query: 50818 FLNLPEGPDGYVIYCD-TSGVGLGCVLMQHG---KVIAYASRQL 50699 L LP+ + ++ D G G + + G + +AY S++L Sbjct: 318 ALGLPDLTKPFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKL 361 Score = 43.0 bits (99), Expect = 0.41 Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 2/197 (1%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG-GLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 Y+ K + C+ C V K G G+ P WE+ + GL + Sbjct: 711 YYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRPGSHWEIDFTEVKPGLYGYK 770 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + V +D + P + +A + + EI G+P + SD G FT+ Sbjct: 771 ----YLLVFVDTFSGWVEAFPTKRE-TARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQ 825 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFA 49528 +S LG L + PQ+ G+ ER +T+++ L + ++ W LPL + Sbjct: 826 VSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYR 885 Query: 49527 YNNHYHSSIQMAPYEALYG 49471 N + PYE LYG Sbjct: 886 ARN-TPGPHGLTPYEILYG 903 Score = 39.5 bits (90), Expect = 4.6 Identities = 37/139 (26%), Positives = 62/139 (43%), Gaps = 5/139 (3%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFL----DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE 9216 F +P F +HR F DL + ++ D R +L TL N Sbjct: 154 FKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLTLGNLG 213 Query: 9217 *CVKFSK*EFCLKYVVFLGHIISGEGIR-VDKEKIESY*SFPRPIFPKNI*SFLALAYYY 9393 K + C K V +LG+++ EG R + + + E+ P P P+ + FL A + Sbjct: 214 YRASAKKAQLCQKQVKYLGYLLK-EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFC 272 Query: 9394 RRFVDRFSSISSPLTKIT*TKVQF 9465 R ++ F+ +++PL +T T F Sbjct: 273 RLWIPGFAEMAAPLYPLTKTGTLF 296 >gb|AAF71152.1| (AF152542) pol protein integrase region [Picea abies] Length = 131 Score = 99.8 bits (245), Expect = 3e-018 Identities = 54/132 (40%), Positives = 77/132 (57%) Frame = -3 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 E ++MDFIT LP+++ K I VI+DRLTK AHF + + A +++ + +LHG Sbjct: 1 EKVSMDFITRLPKSERK-SVIMVIVDRLTKYAHFCALSHPFKASTVATAFMKTVQKLHGG 59 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 P I+SDR F +FW LGTQ+ S++ HPQ+DGK+E + LE LR + D Sbjct: 60 PKIIVSDRDPIFIGHFWTELFSCLGTQLAHSSSCHPQSDGKTEIVNKCLEGYLRCFVSDK 119 Query: 49569 KGSWDDHLPLIE 49534 + W LPL E Sbjct: 120 QTQWFKWLPLAE 131 Score = 58.9 bits (140), Expect = 6e-006 Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%) Frame = +2 Query: 10391 EIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGF 10570 E ++MDFI S R+ + I VIVDRLTK +HF +S A A +++ V++LHG Sbjct: 1 EKVSMDFITRLPKSERK-SVIMVIVDRLTKYAHFCALSHPFKASTVATAFMKTVQKLHGG 59 Query: 10571 LVFIISNRSAYFTAQLWKSFQKSQGSKL-N*VLLFILKEVEKQCTIKTLEYMLRACVIDF 10747 I+S+R F W G++L + + + + K LE LR V D Sbjct: 60 PKIIVSDRDPIFIGHFWTELFSCLGTQLAHSSSCHPQSDGKTEIVNKCLEGYLRCFVSDK 119 Query: 10748 KVNWDDNMPLIE 10783 + W +PL E Sbjct: 120 QTQWFKWLPLAE 131 >emb|CAB65340.1| (AJ133817) viral polypeptide [porcine endogenous retrovirus] Length = 2378 Score = 99.8 bits (245), Expect = 3e-018 Identities = 91/406 (22%), Positives = 184/406 (44%), Gaps = 16/406 (3%) Frame = -2 Query: 51772 VDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKG 51593 +++FP + I + P+ + Y ++ + + ++ L+++G Sbjct: 668 LEQFPQAWAETAGMGLAKQVPPQVIQLKASATPVSVRQYPLSREAREGIWPHVQRLIQQG 727 Query: 51592 FIRPSTSPWGAPVLFVRKKDGSLQMSIE-YKQLNKVTVKNRYPLPRIDDLFDQLQGAK-C 51419 + P SPW P+L VRK + ++ +++NK +P +L L + Sbjct: 728 ILVPVQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVQDIHPTVPNPYNLLSALPPERNW 787 Query: 51418 FSKIDLRSSYHEVRVREADIPKTAF-WT-----RYGHYDFRVLSFGMTNALAVFMDLMNR 51257 ++ +DL+ ++ +R+ P AF W R G + L G N+ +F + ++R Sbjct: 788 YTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGTGRTGQLTWTRLPQGFKNSPTIFDEALHR 847 Query: 51256 VFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTS 51089 F + ++ +VDD+L+ ++++ + + +L L A K + Sbjct: 848 DLANFKIQHPQVTLLQYVDDLLLAGATKQDCLEGTKALLLELSDLGYRASAKKAQICRRE 907 Query: 51088 LAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLI 50909 + +LG+ + + + + V PTT +VR FL A + R ++ FA ++APL Sbjct: 908 VTYLGYSLRGGQRWLTEARKKTVVQIPAPTTAKQVREFLGTAGFCRLWIPGFATLAAPLY 967 Query: 50908 RLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD-TSGVGLGCVLMQH 50732 LT++ +F W +++F +K L AP L LP+ + +Y D GV G + Sbjct: 968 PLTKEKGEFSWAPEHQKAFDAIKKALLSAPALALPDVTKPFTLYVDERKGVARGVLTQTL 1027 Query: 50731 G---KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIF 50561 G + +AY S++L + +P + V +K G ++ + H +L+ I Sbjct: 1028 GPWRRPVAYLSKKLDPVASGWPVCLKAIAAVAILVKDADKLTLGQNITVIAPH-ALENIV 1086 Query: 50560 KQ 50555 +Q Sbjct: 1087 RQ 1088 Score = 45.7 bits (106), Expect = 0.062 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 1/103 (0%) Frame = -3 Query: 49779 VREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLE 49600 + EI G+P I SD G F + K LG L + PQ+ G+ ER +T++ Sbjct: 1476 LEEIFPRFGIPKVIGSDNGPAFVAQVSQGLAKILGIDWKLHCAYRPQSSGQVERMNRTIK 1535 Query: 49599 DMLRASIIDFK-GSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 + L + W LP + F N + PYE LYG Sbjct: 1536 ETLTKLTTETGINDWMALLPFVLFRVRN-TPGQFGLTPYELLYG 1578 >emb|CAB53450.1| (AJ243731) polymerase polyprotein [Crocodylus niloticus] Length = 173 Score = 99.1 bits (243), Expect = 5e-018 Identities = 48/105 (45%), Positives = 72/105 (67%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVK 51479 Y ++ E K LK + LE+G IR S SP +P+ FV K +G L+ I+Y+ LN+ TV+ Sbjct: 68 YALSEKETKHLKTYIDTNLERGLIRQSRSPAASPLFFVPKANGELRPCIDYRVLNRNTVR 127 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAF 51344 NRYPLP I L ++++GA+ ++++DLR +YH VR+R+ D KTAF Sbjct: 128 NRYPLPLISVLLERVKGAQWYTRLDLRGAYHLVRMRQGDEWKTAF 172 Score = 41.8 bits (96), Expect = 0.92 Identities = 26/86 (30%), Positives = 40/86 (46%) Frame = +2 Query: 8747 DKSFI*QNISPWGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXX 8926 ++ I Q+ SP + + F+ K LR CIDY N T + +YPL I Sbjct: 87 ERGLIRQSRSPAASPLFFVPKANGELRPCIDYRVLNRNTVRNRYPLPLISVLLERVKGAQ 146 Query: 8927 XXXNINLRSGCHKMKVRECDVPKTNF 9004 ++LR H +++R+ D KT F Sbjct: 147 WYTRLDLRGAYHLVRMRQGDEWKTAF 172 >gb|AAB86912.1| (U94692) Pol [Rauscher murine leukemia virus] Length = 1204 Score = 99.1 bits (243), Expect = 5e-018 Identities = 87/375 (23%), Positives = 171/375 (45%), Gaps = 18/375 (4%) Frame = -2 Query: 51823 RVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAP 51644 R+H+ + E + +FP + + I + + P+ I Y ++ Sbjct: 134 RLHETSKEPDVSLGSTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPISQ 193 Query: 51643 AELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPL 51464 +K ++ LL++G + P SPW P+L V+K ++ L +V + Sbjct: 194 EARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTHDYRPVQ--DLREVNKRVEDIH 251 Query: 51463 PRIDDLFDQLQGA----KCFSKIDLRSSYHEVRVREADIPKTAFWTR------YGHYDFR 51314 P + + ++ L G + ++ +DL+ ++ +R+ AF R G + Sbjct: 252 PTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQSLFAFEWRDPEMGISGQLTWT 311 Query: 51313 VLSFGMTNALAVFMDLMNRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRV 51146 L G N+ +F + ++R F D+ ++ +VDD+L+ + SE + R +L+ Sbjct: 312 RLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQT 371 Query: 51145 LQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLEL 50966 L A K + + +LG+++ + + E V P TP ++R FL Sbjct: 372 LGDLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGT 431 Query: 50965 A*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGY 50786 A + R ++ FA ++APL LT+ F W ++++ +K L AP L LP+ + Sbjct: 432 AGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPF 491 Query: 50785 VIYCD-TSGVGLGCVLMQHG---KVIAYASRQL 50699 ++ D G G + + G + +AY S++L Sbjct: 492 ELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKL 524 Score = 40.2 bits (92), Expect = 2.7 Identities = 37/139 (26%), Positives = 63/139 (44%), Gaps = 5/139 (3%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFL----DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE 9216 F +P F +HR F DL + ++ D R +LQTL + Sbjct: 317 FKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLG 376 Query: 9217 *CVKFSK*EFCLKYVVFLGHIISGEGIR-VDKEKIESY*SFPRPIFPKNI*SFLALAYYY 9393 K + C K V +LG+++ EG R + + + E+ P P P+ + FL A + Sbjct: 377 YRASAKKAQICQKQVKYLGYLLK-EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFC 435 Query: 9394 RRFVDRFSSISSPLTKIT*TKVQF 9465 R ++ F+ +++PL +T T F Sbjct: 436 RLWIPGFAEMAAPLYPLTKTGTLF 459 Score = 39.9 bits (91), Expect = 3.5 Identities = 29/112 (25%), Positives = 51/112 (44%), Gaps = 1/112 (0%) Frame = -3 Query: 49806 SAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGK 49627 +A+ + + EI G+P + +D G F + ++ LG L + PQ+ G+ Sbjct: 955 TAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQ 1014 Query: 49626 SERTIQTLEDML-RASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYG 49471 ER +T+++ L + ++ W LPL + N + PYE LYG Sbjct: 1015 VERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARN-TPGPHGLTPYEILYG 1066 >gb|AAF71145.1| (AF152535) pol protein integrase region [Abies alba] Length = 131 Score = 98.7 bits (242), Expect = 7e-018 Identities = 53/132 (40%), Positives = 77/132 (58%) Frame = -3 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 E ++MDFITGL +++ K I V++DRLTK AHF + + A ++ + +LHG Sbjct: 1 EKVSMDFITGLLKSEGK-SVIMVVVDRLTKYAHFCALSHPFQASTVATAFMEIVQKLHGN 59 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 P I+SDR FT +FW LGTQ+ S+++HPQ+DG++E + LE LR D Sbjct: 60 PKIIVSDRNPIFTRHFWTKLFSCLGTQLAHSSSYHPQSDGQTEIVNKCLEGYLRCFASDK 119 Query: 49569 KGSWDDHLPLIE 49534 + W LPL E Sbjct: 120 QTHWVKWLPLAE 131 Score = 56.6 bits (134), Expect = 3e-005 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Frame = +2 Query: 10391 EIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGF 10570 E ++MDFI S + + I V+VDRLTK +HF +S A A +++ V++LHG Sbjct: 1 EKVSMDFITGLLKSEGK-SVIMVVVDRLTKYAHFCALSHPFQASTVATAFMEIVQKLHGN 59 Query: 10571 LVFIISNRSAYFTAQLWKSFQKSQGSKL-N*VLLFILKEVEKQCTIKTLEYMLRACVIDF 10747 I+S+R+ FT W G++L + + + + K LE LR D Sbjct: 60 PKIIVSDRNPIFTRHFWTKLFSCLGTQLAHSSSYHPQSDGQTEIVNKCLEGYLRCFASDK 119 Query: 10748 KVNWDDNMPLIE 10783 + +W +PL E Sbjct: 120 QTHWVKWLPLAE 131 >gb|AAA19978.1| (U04327) N-terminus uncertain [Simian foamy virus] Length = 1146 Score = 98.3 bits (241), Expect = 9e-018 Identities = 57/204 (27%), Positives = 102/204 (49%) Frame = -3 Query: 50064 LYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 LYWW M+KD+ + + +C C ++ SG +L+ + P ++ +D+I LP +Q Sbjct: 830 LYWWPNMRKDVVKQLGRCKQCLITNASNKTSGPILRP-DRPQKPFDKFFIDYIGPLPPSQ 888 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + VI+D +T P + ++ L V + +P I SD+GA FT++ Sbjct: 889 GYL-YVLVIVDGMTGFTWLYPTKAPSTSATVKSLNVLTSI---AIPKVIHSDQGAAFTSS 944 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 + + K G + ST +HPQ+ GK ER ++ +L ++ W D LP+++ A Sbjct: 945 TFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLAL 1004 Query: 49524 NNHYHSSIQMAPYEALYGRKCRSP 49453 NN Y ++ P++ L+G +P Sbjct: 1005 NNTYSPVLKYTPHQLLFGIDSNTP 1028 Score = 73.4 bits (177), Expect = 3e-010 Identities = 101/391 (25%), Positives = 162/391 (40%), Gaps = 26/391 (6%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVK 51479 Y + P ++ + DLL++G + P S PV V K DG +M ++Y+++NK Sbjct: 168 YPINPKAKPSIQIVIDDLLKQGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVNKTIPL 227 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 + + K + +DL + + + TAF + Y + L G Sbjct: 228 TAAQNQHSAGILATIVRQKYKTTLDLANGFWAHPITPDSYWLTAFTWQGKQYCWTRLPQG 287 Query: 51298 MTNALAVF----MDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQK 51131 N+ A+F +DL+ V V V+VDDI + + EH L V ++L Sbjct: 288 FLNSPALFTADAVDLLKEVPN------VQVYVDDIYLSHDNPHEHIQQLEKVFQILLQAG 341 Query: 51130 LYAMFSKCEFWLTSLAFLGHIIGADGIRV-DTQKIEAVKTWTRPTTPTEVRSFLELA*YY 50954 K E ++ FLG I +G + DT K + + T P +++S L L + Sbjct: 342 YVVSLKKSEIGQRTVEFLGFNITKEGRGLTDTFKTKLLNV-TPPKDLKQLQSILGLLNFA 400 Query: 50953 RRFVEKFALISAPLIRL--TQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEG-PD--- 50792 R F+ FA + L L + K WT + + + L A NL E PD Sbjct: 401 RNFIPNFAELVQTLYNLIASSKGKYIEWTEDNTKQLNKVIEALNTAS--NLEERLPDQRL 458 Query: 50791 ----------GYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVH 50642 GYV Y + SG K I Y + K E + + L + Sbjct: 459 VIKVNTSPSAGYVRYYNESG----------KKPIMYLNYVFSKAELKFSMLEKLLTTMHK 508 Query: 50641 ALKIWRHYLYGFHVDIYTDHKSLQYIFK-----QKELYLRQRRWLELLKDYDVDILY 50486 AL G + +Y+ S+ I K +K L +R W+ L+D + Y Sbjct: 509 ALIKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKALPIRWITWMTYLEDPRIQFHY 565 >dbj|BAA22064.1| (D88386) gag-pol polyprotein (precursor protein) [Friend murine leukemia virus] Length = 1738 Score = 98.3 bits (241), Expect = 9e-018 Identities = 85/358 (23%), Positives = 167/358 (45%), Gaps = 18/358 (5%) Frame = -2 Query: 51772 VDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKG 51593 + +FP + + I + + P+ I Y M+ +K ++ LL++G Sbjct: 685 LSDFPQAWAETGGMGLAVRQAPLIIPLRAASTPVSIKQYPMSQEARLGIKPHIQRLLDQG 744 Query: 51592 FIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGA---- 51425 + P SPW P+L V+K + ++ L +V + P + + ++ L G Sbjct: 745 ILVPCQSPWNTPLLPVKKPGTNDYRPVQ--DLREVNKRVEDIHPTVPNPYNLLSGLPPSH 802 Query: 51424 KCFSKIDLRSSYHEVRVREADIPKTAFWTR------YGHYDFRVLSFGMTNALAVFMDLM 51263 + ++ +DL+ ++ +R+ AF R G + L G N+ +F + + Sbjct: 803 QWYTVLDLKDAFFCLRLHPTSQSLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL 862 Query: 51262 NRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWL 51095 +R F D+ ++ +VDD+L+ + SE + R +L+ L A K + Sbjct: 863 HRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASAKKAQICQ 922 Query: 51094 TSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAP 50915 + +LG+++ + + E V P TP ++R FL A + R ++ FA ++AP Sbjct: 923 KQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAP 982 Query: 50914 LIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD-TSGVGLGCVLM 50738 L LT+ F W ++++ +K L AP L LP+ + ++ D +G G + Sbjct: 983 LYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKTGYAKGVLTQ 1042 Query: 50737 QHG---KVIAYASRQL 50699 + G + +AY S++L Sbjct: 1043 KLGPWRRPVAYLSKKL 1058 Score = 40.6 bits (93), Expect = 2.1 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 1/131 (0%) Frame = -3 Query: 49863 VIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQK 49684 V ID + P + +A+ + + EI G+P + +D G F + ++ Sbjct: 1471 VFIDTFSGWVEAFPTKKE-TAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVAD 1529 Query: 49683 GLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFAYNNHYHS 49507 LG L + PQ+ G+ ER +T+++ L + ++ W LPL + N Sbjct: 1530 LLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARN-TPG 1588 Query: 49506 SIQMAPYEALYG 49471 + PYE LYG Sbjct: 1589 PHGLTPYEILYG 1600 Score = 40.6 bits (93), Expect = 2.1 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 5/140 (3%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFL----DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE 9216 F +P F +HR F DL + ++ D R +LQTL + Sbjct: 851 FKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLG 910 Query: 9217 *CVKFSK*EFCLKYVVFLGHIISGEGIR-VDKEKIESY*SFPRPIFPKNI*SFLALAYYY 9393 K + C K V +LG+++ EG R + + + E+ P P P+ + FL A + Sbjct: 911 YRASAKKAQICQKQVKYLGYLLK-EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFC 969 Query: 9394 RRFVDRFSSISSPLTKIT*TKVQFQ 9468 R ++ F+ +++PL +T T F+ Sbjct: 970 RLWIPGFAEMAAPLYPLTKTGTLFK 994 >emb|CAA77477.1| (Z11128) RNA-dependent DNA polymerase [Friend murine leukemia virus] Length = 1204 Score = 98.3 bits (241), Expect = 9e-018 Identities = 85/358 (23%), Positives = 166/358 (45%), Gaps = 18/358 (5%) Frame = -2 Query: 51772 VDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKG 51593 + +FP + + I + + P+ I Y M+ +K ++ LL++G Sbjct: 151 LSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQG 210 Query: 51592 FIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGA---- 51425 + P SPW P+L V+K + ++ L +V + P + + ++ L G Sbjct: 211 ILVPCQSPWNTPLLPVKKPGTNDYRPVQ--DLREVNKRVEDIHPTVPNPYNLLSGLPPSH 268 Query: 51424 KCFSKIDLRSSYHEVRVREADIPKTAFWTR------YGHYDFRVLSFGMTNALAVFMDLM 51263 + ++ +DL+ ++ +R+ AF R G + L G N+ +F + + Sbjct: 269 QWYTVLDLKDAFFCLRLHPTSQSLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL 328 Query: 51262 NRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWL 51095 +R F D+ ++ +VDD+L+ + SE + R +L+ L A K + Sbjct: 329 HRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASAKKAQICQ 388 Query: 51094 TSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAP 50915 + +LG+++ + + E V P TP ++R FL A + R ++ FA ++AP Sbjct: 389 KQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAP 448 Query: 50914 LIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD-TSGVGLGCVLM 50738 L LT+ F W ++++ +K L AP L LP+ + ++ D G G + Sbjct: 449 LYPLTKTGTLFEWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQ 508 Query: 50737 QHG---KVIAYASRQL 50699 + G + +AY S++L Sbjct: 509 KLGPWRRPVAYLSKKL 524 Score = 41.0 bits (94), Expect = 1.6 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 5/140 (3%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFL----DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE 9216 F +P F +HR F DL + ++ D R +LQTL + Sbjct: 317 FKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLG 376 Query: 9217 *CVKFSK*EFCLKYVVFLGHIISGEGIR-VDKEKIESY*SFPRPIFPKNI*SFLALAYYY 9393 K + C K V +LG+++ EG R + + + E+ P P P+ + FL A + Sbjct: 377 YRASAKKAQICQKQVKYLGYLLK-EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFC 435 Query: 9394 RRFVDRFSSISSPLTKIT*TKVQFQ 9468 R ++ F+ +++PL +T T F+ Sbjct: 436 RLWIPGFAEMAAPLYPLTKTGTLFE 460 Score = 40.6 bits (93), Expect = 2.1 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 1/131 (0%) Frame = -3 Query: 49863 VIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQK 49684 V ID + P + +A+ + + EI G+P + +D G F + ++ Sbjct: 937 VFIDTFSGWVEAFPTKKE-TAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVAD 995 Query: 49683 GLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFAYNNHYHS 49507 LG L + PQ+ G+ ER +T+++ L + ++ W LPL + N Sbjct: 996 LLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARN-TPG 1054 Query: 49506 SIQMAPYEALYG 49471 + PYE LYG Sbjct: 1055 PHGLTPYEILYG 1066 >gb|AAA46477.1| (M93134) pol protein [Friend murine leukemia virus] Length = 1204 Score = 97.5 bits (239), Expect = 2e-017 Identities = 85/358 (23%), Positives = 166/358 (45%), Gaps = 18/358 (5%) Frame = -2 Query: 51772 VDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKG 51593 + +FP + + I + + P+ I Y M+ +K ++ LL++G Sbjct: 151 LSDFPQAWAETGGMGLAVRQAPLIIPLRAASTPVSIKQYPMSREARLGIKPHIQRLLDQG 210 Query: 51592 FIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGA---- 51425 + P SPW P+L V+K + ++ L +V + P + + ++ L G Sbjct: 211 ILVPCQSPWNTPLLPVKKPGTNDYRPVQ--DLREVNKRVEDIHPTVPNPYNLLSGLPPSH 268 Query: 51424 KCFSKIDLRSSYHEVRVREADIPKTAFWTR------YGHYDFRVLSFGMTNALAVFMDLM 51263 + ++ +DL+ ++ +R+ AF R G + L G N+ +F + + Sbjct: 269 QWYTVLDLKDAFFCLRLHPTSQSLFAFEWRDPEMGISGQLTWTRLPQGFKNSPTLFDEAL 328 Query: 51262 NRVFKPFL----DMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWL 51095 +R F D+ ++ +VDD+L+ + SE + R +L+ L A K + Sbjct: 329 HRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASAKKAQICQ 388 Query: 51094 TSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAP 50915 + +LG+++ + + E V P TP ++R FL A + R ++ FA ++AP Sbjct: 389 KQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAP 448 Query: 50914 LIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD-TSGVGLGCVLM 50738 L LT+ F W ++++ +K L AP L LP+ + ++ D G G + Sbjct: 449 LYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYAKGVLTQ 508 Query: 50737 QHG---KVIAYASRQL 50699 + G + +AY S++L Sbjct: 509 KLGPWRRPVAYLSKKL 524 Score = 40.6 bits (93), Expect = 2.1 Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 5/140 (3%) Frame = +1 Query: 9049 FDIAPAAFMVLMHRVFKPFL----DLFXXXXXXXXXXYSWNKEDHASDLRIVLQTLRNKE 9216 F +P F +HR F DL + ++ D R +LQTL + Sbjct: 317 FKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLG 376 Query: 9217 *CVKFSK*EFCLKYVVFLGHIISGEGIR-VDKEKIESY*SFPRPIFPKNI*SFLALAYYY 9393 K + C K V +LG+++ EG R + + + E+ P P P+ + FL A + Sbjct: 377 YRASAKKAQICQKQVKYLGYLLK-EGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFC 435 Query: 9394 RRFVDRFSSISSPLTKIT*TKVQFQ 9468 R ++ F+ +++PL +T T F+ Sbjct: 436 RLWIPGFAEMAAPLYPLTKTGTLFK 460 Score = 40.2 bits (92), Expect = 2.7 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 1/131 (0%) Frame = -3 Query: 49863 VIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQK 49684 V +D + P + +A+ + + EI G+P + +D G F + ++ Sbjct: 937 VFVDTFSGWVEAFPTKKE-TAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVAD 995 Query: 49683 GLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFAYNNHYHS 49507 LG L + PQ+ G+ ER +T+++ L + ++ W LPL + N Sbjct: 996 LLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARN-TPG 1054 Query: 49506 SIQMAPYEALYG 49471 + PYE LYG Sbjct: 1055 PHGLTPYEILYG 1066 >gb|AAA93092.1| (M18247) gag-pol precursor polyprotein gPr80 [Feline leukemia virus] Length = 1784 Score = 97.1 bits (238), Expect = 2e-017 Identities = 86/334 (25%), Positives = 164/334 (48%), Gaps = 17/334 (5%) Frame = -2 Query: 51676 PIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIE-YKQ 51500 PI I Y M + +K +R +L++G ++P SPW P+L V+K ++ ++ Sbjct: 758 PISIRQYPMPHEAYQGIKPHIRRMLDQGILKPCQSPWNTPLLPVKKPGTKDYRPVQDLRE 817 Query: 51499 LNKVTVKNRYPLPRIDDLFDQLQGAK-CFSKIDLRSSYHEVRVREADIPKTAFWTR---- 51335 +NK +P +L L + ++ +DL+ ++ +R+ AF R Sbjct: 818 VNKRVEDIHPTVPNPYNLLSTLPPSHPWYTVLDLKDAFFCLRLHSESQLLFAFEWRDPEI 877 Query: 51334 --YGHYDFRVLSFGMTNALAVFMDLMNRVFKPFLDMF----VIVFVDDILVYSRSEEEHA 51173 G + L G N+ +F + ++ F + ++ +VDD+L+ + + E Sbjct: 878 GLSGQLTWTRLPQGFKNSPTLFDEALHSDLADFRVRYPALVLLQYVDDLLLAAATRTECL 937 Query: 51172 DHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQ-KIEAVKTWTRPTT 50996 + + +L L ++ A K + L + +LG+ + DG R T+ + EA+ + P Sbjct: 938 EGTKALLETLGNKGYRASAKKAQICLQEVTYLGYSL-KDGQRWLTKARKEAILSIPVPKN 996 Query: 50995 PTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPF 50816 P +VR FL A Y R ++ FA ++APL LT+ F W + +F ++ L +P Sbjct: 997 PRQVREFLGTAGYCRLWIPGFAELAAPLYPLTRPGTLFQWGTEQQLAFENIRKALLSSPA 1056 Query: 50815 LNLPEGPDGYVIYCD-TSGVGLGCVLMQHG---KVIAYASRQLRKHENNYP 50675 L LP+ + ++ D SG G ++ + G + +AY S++L + +P Sbjct: 1057 LGLPDITKPFELFIDENSGFAKGVLVQKLGPWKRPVAYLSKKLDTVASGWP 1107 Score = 45.7 bits (106), Expect = 0.062 Identities = 28/95 (29%), Positives = 48/95 (50%) Frame = +1 Query: 9184 RIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI 9363 + +L+TL NK K + CL+ V +LG+ + + K + E+ S P P P+ + Sbjct: 941 KALLETLGNKGYRASAKKAQICLQEVTYLGYSLKDGQRWLTKARKEAILSIPVPKNPRQV 1000 Query: 9364 *SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ 9468 FL A Y R ++ F+ +++PL +T FQ Sbjct: 1001 REFLGTAGYCRLWIPGFAELAAPLYPLTRPGTLFQ 1035 Score = 44.5 bits (103), Expect = 0.14 Identities = 41/168 (24%), Positives = 76/168 (44%), Gaps = 2/168 (1%) Frame = -3 Query: 49863 VIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQK 49684 V ID + A P + +A+ + + EI +G+P + SD G F + +S Sbjct: 1510 VFIDTFSGWAEAYPAKHE-TAKVVAKKLLEEIFPRYGIPQVLGSDNGPAFISQVSQSVAT 1568 Query: 49683 GLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFAYNNHYHS 49507 LG L + PQ+ G+ ER +++++ L + ++ W LPL+ + N Sbjct: 1569 LLGINWKLHCAYRPQSSGQVERMNRSIKETLTKLTLETGSKDWVLLLPLVLYRVRN-TPG 1627 Query: 49506 SIQMAPYEALYGRKCRSPIG-WFDVGETKLIGPDMIQQVVDKVKLIQERL 49360 + P+E LYG P+ +FD + +Q + ++L+QE + Sbjct: 1628 PHGLTPFEILYG--APPPMAHFFDTDISTFATSPTMQAHLRALQLVQEEI 1675 >gb|AAF71151.1| (AF152541) pol protein integrase region [Picea abies] Length = 131 Score = 96.7 bits (237), Expect = 3e-017 Identities = 51/132 (38%), Positives = 75/132 (56%) Frame = -3 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 E ++MDFI GLP+ + K I VI DRLTK HF + + + ++ + +LHG Sbjct: 1 EKVSMDFIIGLPKFEGK-SVIMVIFDRLTKYTHFCALSHPFKSSTVATAFMETVQKLHGS 59 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 P I+SDR FT +FW LGTQ+ S+++HPQ+DG+++ + LE LR + D Sbjct: 60 PKIIVSDRDPIFTGHFWTKLFSCLGTQLAHSSSYHPQSDGQTDIVNKCLEGYLRYFVSDK 119 Query: 49569 KGSWDDHLPLIE 49534 + W LPL E Sbjct: 120 QAQWFKWLPLAE 131 Score = 52.3 bits (123), Expect = 6e-004 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 1/131 (0%) Frame = +2 Query: 10391 EIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGF 10570 E ++MDFI + I VI DRLTK +HF +S + A +++ V++LHG Sbjct: 1 EKVSMDFIIGLP-KFEGKSVIMVIFDRLTKYTHFCALSHPFKSSTVATAFMETVQKLHGS 59 Query: 10571 LVFIISNRSAYFTAQLWKSFQKSQGSKL-N*VLLFILKEVEKQCTIKTLEYMLRACVIDF 10747 I+S+R FT W G++L + + + K LE LR V D Sbjct: 60 PKIIVSDRDPIFTGHFWTKLFSCLGTQLAHSSSYHPQSDGQTDIVNKCLEGYLRYFVSDK 119 Query: 10748 KVNWDDNMPLIE 10783 + W +PL E Sbjct: 120 QAQWFKWLPLAE 131 >gb|AAA47796.1| (M74895) pol polyprotein [Simian foamy virus type 3] Length = 1157 Score = 96.0 bits (235), Expect = 5e-017 Identities = 59/232 (25%), Positives = 109/232 (46%) Frame = -3 Query: 50148 RRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG 49969 R Q++ + H+ ++ G + + YWW ++KD+ + + QC C + Sbjct: 818 RPQIILQAHNIAHT---GRDSTFLKVSSKYWWPNLRKDVVKVIRQCKQCLVTNAATLAAP 874 Query: 49968 GLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYV 49789 +L+ E P ++ +D+I LP + + V++D +T P + ++ Sbjct: 875 PILRP-ERPVKPFDKFFIDYIGPLPPSNGYLH-VLVVVDSMTGFVWLYPTKAPSTSATVK 932 Query: 49788 RLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQ 49609 L + + VP I SD+GA FT+ + + K G Q+ ST +HPQ+ GK ER Sbjct: 933 ALNMLTSI---AVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNS 989 Query: 49608 TLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 ++ +L ++ W D LP+++ A NN Y S + P++ L+G +P Sbjct: 990 DIKRLLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGIDSNTP 1041 Score = 67.9 bits (163), Expect = 1e-008 Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 8/256 (3%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNK---- 51491 Y + P ++ + DLL++G + S PV V K DG +M ++Y+++NK Sbjct: 182 YPINPKAKASIQTVINDLLKQGVLIQQNSIMNTPVYPVPKPDGKWRMVLDYREVNKTIPL 241 Query: 51490 VTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRV 51311 + +N++ + +F K + +DL + + + TAF Y + Sbjct: 242 IAAQNQHSAGILSSIF----RGKYKTTLDLSNGFWAHSITPESYWLTAFTWLGQQYCWTR 297 Query: 51310 LSFGMTNALAVF----MDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVL 51143 L G N+ A+F +DL+ V V V+VDDI + EH + L V +L Sbjct: 298 LPQGFLNSPALFTADVVDLLKEVPN------VQVYVDDIYISHDDPREHLEQLEKVFSLL 351 Query: 51142 QHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA 50963 + K E + FLG I +G + + + T P +++S L L Sbjct: 352 LNAGYVVSLKKSEIAQHEVEFLGFNITKEGRGLTETFKQKLLNITPPRDLKQLQSILGLL 411 Query: 50962 *YYRRFVEKFALISAPLIRLTQKA 50891 + R F+ F+ + PL + A Sbjct: 412 NFARNFIPNFSELVKPLYNIIATA 435 >gb|AAA46122.1| (M54978) pol protein [Human spumaretrovirus] Length = 343 Score = 95.2 bits (233), Expect = 8e-017 Identities = 55/204 (26%), Positives = 101/204 (48%) Frame = -3 Query: 50064 LYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 LYWW M+KD+ + + +C C ++ SG +L+ + P ++ +D+I LP +Q Sbjct: 90 LYWWPNMRKDVVKQLGRCQQCLITNASNKASGPILRP-DRPQKPFDKFFIDYIGPLPPSQ 148 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + V++D +T P + ++ L V + +P I SD+GA FT++ Sbjct: 149 GYL-YVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSI---AIPKVIHSDQGAAFTSS 204 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 + + K G + ST +HPQ+ K ER ++ +L ++ W D LP+++ A Sbjct: 205 TFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLAL 264 Query: 49524 NNHYHSSIQMAPYEALYGRKCRSP 49453 NN Y ++ P++ L+G +P Sbjct: 265 NNTYSPVLKYTPHQLLFGIDSNTP 288 >gb|AAC31801.1| (AF052723) gag-pol precursor polyprotein gPr80 [Feline leukemia virus] Length = 1786 Score = 95.2 bits (233), Expect = 8e-017 Identities = 89/363 (24%), Positives = 169/363 (46%), Gaps = 17/363 (4%) Frame = -2 Query: 51763 FPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAPAELKELKEQLRDLLEKGFIR 51584 FP + + I + PI I Y M + +K +R +L++G ++ Sbjct: 729 FPQAWAETGGMGTAHCQAPVLIQLKATATPISIRQYPMPHEAYQGIKPHIRRMLDQGILK 788 Query: 51583 PSTSPWGAPVLFVRKKDGSLQMSIE-YKQLNKVTVKNRYPLPRIDDLFDQLQGAK-CFSK 51410 P SPW P+L V+K ++ +++NK +P +L L + ++ Sbjct: 789 PCQSPWNTPLLPVKKPGTEDYRPVQDLREVNKRVEDIHPTVPNPYNLLSTLPPSHPWYTV 848 Query: 51409 IDLRSSYHEVRVREADIPKTAFWTR------YGHYDFRVLSFGMTNALAVFMDLMNRVFK 51248 +DL+ ++ +R+ AF R G + L G N+ +F + ++ Sbjct: 849 LDLKDAFFCLRLHSESQLLFAFEWRDPEIGLSGQLTWTRLPQGFKNSPTLFDEALHSDLA 908 Query: 51247 PFLDMF----VIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAF 51080 F + ++ +VDD+L+ + + E + + +L L ++ A K + L + + Sbjct: 909 DFRVRYPALVLLQYVDDLLLAAATRTECLEGTKALLETLGNKGYRASAKKAQICLQEVTY 968 Query: 51079 LGHIIGADGIRVDTQ-KIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRL 50903 LG+ + DG R T+ + EA+ + P +VR FL A Y R ++ FA ++APL L Sbjct: 969 LGYSL-KDGQRWLTKARKEAILSIPVPKNSRQVREFLGTAGYCRLWIPGFAELAAPLYPL 1027 Query: 50902 TQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCD-TSGVGLGCVLMQHG- 50729 T+ F W + +F +K L +P L LP+ + ++ D SG G ++ + G Sbjct: 1028 TRPGTLFQWGTEQQLAFEDIKKALLSSPALGLPDITKPFELFIDENSGFAKGVLVQKLGP 1087 Query: 50728 --KVIAYASRQLRKHENNYP 50675 + +AY S++L + +P Sbjct: 1088 WKRPVAYLSKKLDTVASGWP 1107 Score = 44.9 bits (104), Expect = 0.11 Identities = 41/168 (24%), Positives = 76/168 (44%), Gaps = 2/168 (1%) Frame = -3 Query: 49863 VIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQK 49684 V ID + A P + +A+ + + EI +G+P + SD G F + +S Sbjct: 1512 VFIDTFSGWAEAYPAKHE-TAKVVAKKLLEEIFPRYGIPQVLGSDNGPAFISQVSQSVAT 1570 Query: 49683 GLGTQVNLSTTFHPQTDGKSERTIQTLEDML-RASIIDFKGSWDDHLPLIEFAYNNHYHS 49507 LG L + PQ+ G+ ER +++++ L + ++ W LPL+ + N Sbjct: 1571 LLGINWKLHCAYRPQSSGQVERMNRSIKETLTKLTLETGSKDWVLLLPLVLYRVRN-TPG 1629 Query: 49506 SIQMAPYEALYGRKCRSPIG-WFDVGETKLIGPDMIQQVVDKVKLIQERL 49360 + P+E LYG P+ +FD + +Q + ++L+QE + Sbjct: 1630 PHGLTPFEILYG--APPPMAHFFDTDISSFATSPTMQAHLRALQLVQEEI 1677 Score = 43.4 bits (100), Expect = 0.31 Identities = 29/109 (26%), Positives = 52/109 (47%) Frame = +1 Query: 9184 RIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI 9363 + +L+TL NK K + CL+ V +LG+ + + K + E+ S P P + + Sbjct: 941 KALLETLGNKGYRASAKKAQICLQEVTYLGYSLKDGQRWLTKARKEAILSIPVPKNSRQV 1000 Query: 9364 *SFLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNK 9510 FL A Y R ++ F+ +++PL +T FQ + F ++ K Sbjct: 1001 REFLGTAGYCRLWIPGFAELAAPLYPLTRPGTLFQWGTEQQLAFEDIKK 1049 >gb|AAB48112.1| (U21247) pro-pol protein [Human spumaretrovirus] Length = 1143 Score = 95.2 bits (233), Expect = 8e-017 Identities = 55/204 (26%), Positives = 101/204 (48%) Frame = -3 Query: 50064 LYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 LYWW M+KD+ + + +C C ++ SG +L+ + P ++ +D+I LP +Q Sbjct: 830 LYWWPNMRKDVVKQLGRCQQCLITNASNKASGPILRP-DRPQKPFDKFFIDYIGPLPPSQ 888 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + V++D +T P + ++ L V + +P I SD+GA FT++ Sbjct: 889 GYL-YVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSI---AIPKVIHSDQGAAFTSS 944 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 + + K G + ST +HPQ+ K ER ++ +L ++ W D LP+++ A Sbjct: 945 TFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLAL 1004 Query: 49524 NNHYHSSIQMAPYEALYGRKCRSP 49453 NN Y ++ P++ L+G +P Sbjct: 1005 NNTYSPVLKYTPHQLLFGIDSNTP 1028 Score = 76.5 bits (185), Expect = 3e-011 Identities = 99/391 (25%), Positives = 164/391 (41%), Gaps = 24/391 (6%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVK 51479 Y + P ++ + DLL++G + P S PV V K DG +M ++Y+++NK Sbjct: 168 YPINPKAKPSIQIVIDDLLKQGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVNKTIPL 227 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 + + K + +DL + + + TAF + Y + L G Sbjct: 228 TAAQNQHSAGILATIVRQKYKTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQG 287 Query: 51298 MTNALAVF----MDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQK 51131 N+ A+F +DL+ + V V+VDDI + +EH L V ++L Sbjct: 288 FLNSPALFTADVVDLLKEIPN------VQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAG 341 Query: 51130 LYAMFSKCEFWLTSLAFLGHIIGADGIRV-DTQKIEAVKTWTRPTTPTEVRSFLELA*YY 50954 K E ++ FLG I +G + DT K + + T P +++S L L + Sbjct: 342 YVVSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLLNI-TPPKDLKQLQSILGLLNFA 400 Query: 50953 RRFVEKFALISAPLIRL--TQKAAKF*WTNACERSF*LLKDKLTIAPFL--NLPE----- 50801 R F+ FA + PL L + K W+ + ++ + L A L LPE Sbjct: 401 RNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLNMVIEALNTASNLEERLPEQRLVI 460 Query: 50800 ----GPD-GYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHAL 50636 P GYV Y + +G K I Y + K E + + L + AL Sbjct: 461 KVNTSPSAGYVRYYNETG----------KKPIMYLNYVFSKAELKFSMLEKLLTTMHKAL 510 Query: 50635 KIWRHYLYGFHVDIYTDHKSLQYIFK-----QKELYLRQRRWLELLKDYDVDILY 50486 G + +Y+ S+ I K +K L +R W+ L+D + Y Sbjct: 511 IKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKALPIRWITWMTYLEDPRIQFHY 565 >emb|CAA68999.1| (Y07724) pol [Human foamy virus] Length = 1143 Score = 95.2 bits (233), Expect = 8e-017 Identities = 55/204 (26%), Positives = 101/204 (48%) Frame = -3 Query: 50064 LYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 LYWW M+KD+ + + +C C ++ SG +L+ + P ++ +D+I LP +Q Sbjct: 830 LYWWPNMRKDVVKQLGRCQQCLITNASNKASGPILRP-DRPQKPFDKFFIDYIGPLPPSQ 888 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + V++D +T P + ++ L V + +P I SD+GA FT++ Sbjct: 889 GYL-YVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSI---AIPKVIHSDQGAAFTSS 944 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 + + K G + ST +HPQ+ K ER ++ +L ++ W D LP+++ A Sbjct: 945 TFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLAL 1004 Query: 49524 NNHYHSSIQMAPYEALYGRKCRSP 49453 NN Y ++ P++ L+G +P Sbjct: 1005 NNTYSPVLKYTPHQLLFGIDSNTP 1028 Score = 76.5 bits (185), Expect = 3e-011 Identities = 99/391 (25%), Positives = 164/391 (41%), Gaps = 24/391 (6%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVK 51479 Y + P ++ + DLL++G + P S PV V K DG +M ++Y+++NK Sbjct: 168 YPINPKAKPSIQIVIDDLLKQGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVNKTIPL 227 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 + + K + +DL + + + TAF + Y + L G Sbjct: 228 TAAQNQHSAGILATIVRQKYKTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQG 287 Query: 51298 MTNALAVF----MDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQK 51131 N+ A+F +DL+ + V V+VDDI + +EH L V ++L Sbjct: 288 FLNSPALFTADVVDLLKEIPN------VQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAG 341 Query: 51130 LYAMFSKCEFWLTSLAFLGHIIGADGIRV-DTQKIEAVKTWTRPTTPTEVRSFLELA*YY 50954 K E ++ FLG I +G + DT K + + T P +++S L L + Sbjct: 342 YVVSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLLNI-TPPKDLKQLQSILGLLNFA 400 Query: 50953 RRFVEKFALISAPLIRL--TQKAAKF*WTNACERSF*LLKDKLTIAPFL--NLPE----- 50801 R F+ FA + PL L + K W+ + ++ + L A L LPE Sbjct: 401 RNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLNMVIEALNTASNLEERLPEQRLVI 460 Query: 50800 ----GPD-GYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHAL 50636 P GYV Y + +G K I Y + K E + + L + AL Sbjct: 461 KVNTSPSAGYVRYYNETG----------KKPIMYLNYVFSKAELKFSMLEKLLTTMHKAL 510 Query: 50635 KIWRHYLYGFHVDIYTDHKSLQYIFK-----QKELYLRQRRWLELLKDYDVDILY 50486 G + +Y+ S+ I K +K L +R W+ L+D + Y Sbjct: 511 IKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKALPIRWITWMTYLEDPRIQFHY 565 >emb|CAA68997.1| (Y07723) pol [Human foamy virus] Length = 1143 Score = 95.2 bits (233), Expect = 8e-017 Identities = 55/204 (26%), Positives = 101/204 (48%) Frame = -3 Query: 50064 LYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 LYWW M+KD+ + + +C C ++ SG +L+ + P ++ +D+I LP +Q Sbjct: 830 LYWWPNMRKDVVKQLGRCQQCLITNASNKASGPILRP-DRPQKPFDKFFIDYIGPLPPSQ 888 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + V++D +T P + ++ L V + +P I SD+GA FT++ Sbjct: 889 GYL-YVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSI---AIPKVIHSDQGAAFTSS 944 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 + + K G + ST +HPQ+ K ER ++ +L ++ W D LP+++ A Sbjct: 945 TFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLAL 1004 Query: 49524 NNHYHSSIQMAPYEALYGRKCRSP 49453 NN Y ++ P++ L+G +P Sbjct: 1005 NNTYSPVLKYTPHQLLFGIDSNTP 1028 Score = 76.5 bits (185), Expect = 3e-011 Identities = 99/391 (25%), Positives = 164/391 (41%), Gaps = 24/391 (6%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVK 51479 Y + P ++ + DLL++G + P S PV V K DG +M ++Y+++NK Sbjct: 168 YPINPKAKPSIQIVIDDLLKQGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVNKTIPL 227 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 + + K + +DL + + + TAF + Y + L G Sbjct: 228 TAAQNQHSAGILATIVRQKYKTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQG 287 Query: 51298 MTNALAVF----MDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQK 51131 N+ A+F +DL+ + V V+VDDI + +EH L V ++L Sbjct: 288 FLNSPALFTADVVDLLKEIPN------VQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAG 341 Query: 51130 LYAMFSKCEFWLTSLAFLGHIIGADGIRV-DTQKIEAVKTWTRPTTPTEVRSFLELA*YY 50954 K E ++ FLG I +G + DT K + + T P +++S L L + Sbjct: 342 YVVSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLLNI-TPPKDLKQLQSILGLLNFA 400 Query: 50953 RRFVEKFALISAPLIRL--TQKAAKF*WTNACERSF*LLKDKLTIAPFL--NLPE----- 50801 R F+ FA + PL L + K W+ + ++ + L A L LPE Sbjct: 401 RNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLNMVIEALNTASNLEERLPEQRLVI 460 Query: 50800 ----GPD-GYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHAL 50636 P GYV Y + +G K I Y + K E + + L + AL Sbjct: 461 KVNTSPSAGYVRYYNETG----------KKPIMYLNYVFSKAELKFSMLEKLLTTMHKAL 510 Query: 50635 KIWRHYLYGFHVDIYTDHKSLQYIFK-----QKELYLRQRRWLELLKDYDVDILY 50486 G + +Y+ S+ I K +K L +R W+ L+D + Y Sbjct: 511 IKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKALPIRWITWMTYLEDPRIQFHY 565 >emb|CAA69003.1| (Y07725) pol [Human foamy virus] Length = 1143 Score = 95.2 bits (233), Expect = 8e-017 Identities = 55/204 (26%), Positives = 101/204 (48%) Frame = -3 Query: 50064 LYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ 49885 LYWW M+KD+ + + +C C ++ SG +L+ + P ++ +D+I LP +Q Sbjct: 830 LYWWPNMRKDVVKQLGRCQQCLITNASNKASGPILRP-DRPQKPFDKFFIDYIGPLPPSQ 888 Query: 49884 *K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTN 49705 + V++D +T P + ++ L V + +P I SD+GA FT++ Sbjct: 889 GYL-YVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSI---AIPKVIHSDQGAAFTSS 944 Query: 49704 FWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAY 49525 + + K G + ST +HPQ+ K ER ++ +L ++ W D LP+++ A Sbjct: 945 TFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLAL 1004 Query: 49524 NNHYHSSIQMAPYEALYGRKCRSP 49453 NN Y ++ P++ L+G +P Sbjct: 1005 NNTYSPVLKYTPHQLLFGIDSNTP 1028 Score = 76.5 bits (185), Expect = 3e-011 Identities = 99/391 (25%), Positives = 164/391 (41%), Gaps = 24/391 (6%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVK 51479 Y + P ++ + DLL++G + P S PV V K DG +M ++Y+++NK Sbjct: 168 YPINPKAKPSIQIVIDDLLKQGVLTPQNSTMNTPVYPVPKPDGRWRMVLDYREVNKTIPL 227 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 + + K + +DL + + + TAF + Y + L G Sbjct: 228 TAAQNQHSAGILATIVRQKYKTTLDLANGFWAHPITPESYWLTAFTWQGKQYCWTRLPQG 287 Query: 51298 MTNALAVF----MDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQK 51131 N+ A+F +DL+ + V V+VDDI + +EH L V ++L Sbjct: 288 FLNSPALFTADVVDLLKEIPN------VQVYVDDIYLSHDDPKEHVQQLEKVFQILLQAG 341 Query: 51130 LYAMFSKCEFWLTSLAFLGHIIGADGIRV-DTQKIEAVKTWTRPTTPTEVRSFLELA*YY 50954 K E ++ FLG I +G + DT K + + T P +++S L L + Sbjct: 342 YVVSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLLNI-TPPKDLKQLQSILGLLNFA 400 Query: 50953 RRFVEKFALISAPLIRL--TQKAAKF*WTNACERSF*LLKDKLTIAPFL--NLPE----- 50801 R F+ FA + PL L + K W+ + ++ + L A L LPE Sbjct: 401 RNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLNMVIEALNTASNLEERLPEQRLVI 460 Query: 50800 ----GPD-GYVIYCDTSGVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHAL 50636 P GYV Y + +G K I Y + K E + + L + AL Sbjct: 461 KVNTSPSAGYVRYYNETG----------KKPIMYLNYVFSKAELKFSMLEKLLTTMHKAL 510 Query: 50635 KIWRHYLYGFHVDIYTDHKSLQYIFK-----QKELYLRQRRWLELLKDYDVDILY 50486 G + +Y+ S+ I K +K L +R W+ L+D + Y Sbjct: 511 IKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKALPIRWITWMTYLEDPRIQFHY 565 >gb|AAD27551.1|AF111709_5 (AF111709) gag-pol protein [Oryza sativa subsp. indica] Length = 1016 Score = 94.8 bits (232), Expect = 1e-016 Identities = 49/129 (37%), Positives = 75/129 (57%), Gaps = 1/129 (0%) Frame = -2 Query: 51646 PAELKELKEQLRDLLEKGFIRPSTSP-WGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNRY 51470 P +KE+L LL GFI+ P W A + VRKK G +M ++Y LNK K+ + Sbjct: 837 PDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPF 896 Query: 51469 PLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFGMTN 51290 LPRID + D G + S +D S YH++R++E+D KT+F T +G Y + + FG+ N Sbjct: 897 GLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYITMPFGLKN 956 Query: 51289 ALAVFMDLMN 51260 A A + +++ Sbjct: 957 AGATYQRILD 966 Score = 47.6 bits (111), Expect = 0.016 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%) Frame = +2 Query: 8756 FI*QNISP-WGALVLFLRKKK*YLRICIDYLQFNNVTTKKKYPLLRIYGXXXXXXXXXXX 8932 FI + + P W A + +RKK R+C+DY N K + L RI Sbjct: 855 FIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELL 914 Query: 8933 XNINLRSGCHKMKVRECDVPKTNFIKRYGHYLFLVI 9040 ++ SG H+++++E D KT+FI +G Y ++ + Sbjct: 915 SFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYITM 950 >gb|AAD15534.1| (AC006217) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1664 Score = 94.0 bits (230), Expect = 2e-016 Identities = 64/171 (37%), Positives = 87/171 (50%), Gaps = 4/171 (2%) Frame = -2 Query: 51205 LVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIE 51026 L YS S +L VL + L + KC F + LGH I GI VD KI+ Sbjct: 1484 LGYSPSFSSCLLNLGRVLTRCKETNLVLNWEKCHFMVKEGIVLGHKISKKGIEVDKGKIK 1543 Query: 51025 AVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACERSF*L 50846 + P T ++RSFL A +YRRF++ F+ I+ PL RL K +F + C +SF Sbjct: 1544 VIMQLQPPKTVKDIRSFLGHAGFYRRFIKDFSKIARPLTRLLCKETEFEFDEDCLKSFHT 1603 Query: 50845 LKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQH-GK---VIAYASRQLRK 50693 +K+ L AP + P + I CD S +G +L Q GK VI YASR+ K Sbjct: 1604 IKEALVSAPVVRAPNWDYPFEIMCDASDYAVGAILGQRIGKKLHVIYYASRRWMK 1658 Score = 65.2 bits (156), Expect = 8e-008 Identities = 42/131 (32%), Positives = 62/131 (47%) Frame = +1 Query: 9190 VLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPRPIFPKNI*S 9369 VL + + + K F +K + LGH IS +GI VDK KI+ P K+I S Sbjct: 1500 VLTRCKETNLVLNWEKCHFMVKEGIVLGHKISKKGIEVDKGKIKVIMQLQPPKTVKDIRS 1559 Query: 9370 FLALAYYYRRFVDRFSSISSPLTKIT*TKVQFQ*SEGCE*RFRELNKRXXXXXXXXXXXX 9549 FL A +YRRF+ FS I+ PLT++ + +F+ E C F + + Sbjct: 1560 FLGHAGFYRRFIKDFSKIARPLTRLLCKETEFEFDEDCLKSFHTIKEALVSAPVVRAPNW 1619 Query: 9550 XHVFIVYCHAS 9582 + F + C AS Sbjct: 1620 DYPFEIMCDAS 1630 >dbj|BAA32280.1| (AB016585) unnamed protein product [Tricholoma nauseosum] Length = 135 Score = 93.6 bits (229), Expect = 2e-016 Identities = 52/133 (39%), Positives = 76/133 (57%) Frame = -2 Query: 51220 FVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVD 51041 ++DDIL+++R+ EEH VL L+ KLY KC+F T + +LG II + +D Sbjct: 2 YLDDILIFTRTVEEHRRITCLVLEQLRQYKLYLRQDKCKFERTKIEYLGLIISEGQVEMD 61 Query: 51040 TQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKFALISAPLIRLTQKAAKF*WTNACE 50861 K+ V W PT EV+SFL +YRRF++ F+ + PL LT K A + W NA + Sbjct: 62 PIKVNGVTAWLTPTNKKEVQSFLGFINFYRRFIKDFSHHARPLFDLTGKEA-WRWDNAQQ 120 Query: 50860 RSF*LLKDKLTIA 50822 +F LK+ +T A Sbjct: 121 EAFEKLKEMVTSA 133 Score = 45.7 bits (106), Expect = 0.062 Identities = 29/95 (30%), Positives = 48/95 (50%) Frame = +1 Query: 9163 EDHASDLRIVLQTLRNKE*CVKFSK*EFCLKYVVFLGHIISGEGIRVDKEKIESY*SFPR 9342 E+H +VL+ LR + ++ K +F + +LG IIS + +D K+ ++ Sbjct: 14 EEHRRITCLVLEQLRQYKLYLRQDKCKFERTKIEYLGLIISEGQVEMDPIKVNGVTAWLT 73 Query: 9343 PIFPKNI*SFLALAYYYRRFVDRFSSISSPLTKIT 9447 P K + SFL +YRRF+ FS + PL +T Sbjct: 74 PTNKKEVQSFLGFINFYRRFIKDFSHHARPLFDLT 108 >gb|AAB68770.1| (U94514) pol polyprotein [bovine syncytial virus] Length = 1220 Score = 93.2 bits (228), Expect = 3e-016 Identities = 72/256 (28%), Positives = 117/256 (45%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVK 51479 Y + P +++ + DLL +G +R S PV V K DG +M ++Y+++NKVT Sbjct: 165 YHINPRAKADIQIVIDDLLRQGVLRQQNSEMNTPVYPVPKADGRWRMVLDYREVNKVTPL 224 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 + + L S +DL + + ++ D TAF Y + VL G Sbjct: 225 VATQNCHSASILNTLYRGPYKSTLDLANGFWAHPIKPEDYWITAFTWGGKTYCWTVLPQG 284 Query: 51298 MTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAM 51119 N+ A+F + + K + V V+VDD+ V S +E+EH D L T+ L Sbjct: 285 FLNSPALFTADVVDILKDIPN--VQVYVDDVYVSSATEQEHLDILETIFNRLSTAGYIVS 342 Query: 51118 FSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVE 50939 K + ++ FLG I +G + + + PTT +++S L L + R F+ Sbjct: 343 LKKSKLAKETVEFLGFSISQNGRGLTDSYKQKLMDLQPPTTLRQLQSILGLINFARNFLP 402 Query: 50938 KFALISAPLIRLTQKA 50891 FA + APL +L KA Sbjct: 403 NFAELVAPLYQLIPKA 418 Score = 78.4 bits (190), Expect = 9e-012 Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 2/224 (0%) Frame = -3 Query: 50124 HSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEI 49945 H S + G + + L+ YWW M D + V C+ C +QK L I Sbjct: 816 HDGPGSAHLGRSALLLKLQQKYWWPRMHIDASRIVLNCTVCAQTNSTNQKPRPPLV-IPH 874 Query: 49944 PTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIV 49765 T +++ MD+I LP + ++ VI+D T P + + V+ + Sbjct: 875 DTKPFQVWYMDYIGPLPPSNGYQHAL-VIVDAGTGFTWIYPTKAQTA-----NATVKALT 928 Query: 49764 RLHG--VPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDML 49591 L G VP + SD+G FT++ + K G Q+ S +HPQ+ GK ER ++ +L Sbjct: 929 HLTGTAVPKVLHSDQGPAFTSSILADWAKDRGIQLEHSAPYHPQSSGKVERKNSEIKRLL 988 Query: 49590 RASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 + W +P+++ A NN ++ + P++ +YG C P Sbjct: 989 TKLLAGRPTKWYPLIPIVQLALNNTPNTRQKYTPHQLMYGADCNLP 1034 >gb|AAF71153.1| (AF152543) pol protein integrase region [Picea abies] Length = 131 Score = 92.8 bits (227), Expect = 4e-016 Identities = 50/132 (37%), Positives = 75/132 (55%) Frame = -3 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 E ++MDFIT LP+++ K I VI+DRLTK HF + + A ++ + +LHG Sbjct: 1 EKVSMDFITRLPKSEGK-SVIMVIVDRLTKYTHFCALSHPFKASKVSTAFMETVQKLHGS 59 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 I+SDR FT +FW LGTQ+ S+++HPQ++G++E + LE L + D Sbjct: 60 SKIIVSDRDPIFTGHFWTKLFSCLGTQLAHSSSYHPQSNGQTEIVNKCLEGYLHCFVSDK 119 Query: 49569 KGSWDDHLPLIE 49534 + W LPL E Sbjct: 120 QTQWFKWLPLAE 131 Score = 56.2 bits (133), Expect = 4e-005 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 1/131 (0%) Frame = +2 Query: 10391 EIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGF 10570 E ++MDFI S + + I VIVDRLTK +HF +S A + +++ V++LHG Sbjct: 1 EKVSMDFITRLPKSEGK-SVIMVIVDRLTKYTHFCALSHPFKASKVSTAFMETVQKLHGS 59 Query: 10571 LVFIISNRSAYFTAQLWKSFQKSQGSKL-N*VLLFILKEVEKQCTIKTLEYMLRACVIDF 10747 I+S+R FT W G++L + + + K LE L V D Sbjct: 60 SKIIVSDRDPIFTGHFWTKLFSCLGTQLAHSSSYHPQSNGQTEIVNKCLEGYLHCFVSDK 119 Query: 10748 KVNWDDNMPLIE 10783 + W +PL E Sbjct: 120 QTQWFKWLPLAE 131 >gb|AAC58531.1| (U85043) reverse transcriptase [feline syncytial virus] Length = 1156 Score = 92.4 bits (226), Expect = 5e-016 Identities = 104/391 (26%), Positives = 170/391 (42%), Gaps = 17/391 (4%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVT-- 51485 Y + P +++ + DLL++G + S PV V K +G +M ++Y+ +NKVT Sbjct: 165 YHINPKAKPDIQIVINDLLKQGVLIQKESTMNTPVYPVPKPNGRWRMVLDYRAVNKVTPL 224 Query: 51484 --VKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRV 51311 V+N++ I LF K + IDL + + + D TAF + Y + V Sbjct: 225 IAVQNQHSYGIIGSLFK----GKYKTTIDLSNGFWAHPIVPEDYWITAFTWQGKQYCWTV 280 Query: 51310 LSFGMTNALAVF----MDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVL 51143 L G N+ +F +DL+ + V V+VDD+ + SE+EH ++L + L Sbjct: 281 LPQGFLNSPGLFTGDVVDLLQGIPN------VEVYVDDVYISHDSEKEHLEYLDILFNRL 334 Query: 51142 QHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA 50963 + K + + FLG I +G + E ++ T PTT +++S L L Sbjct: 335 KEAGYIVSLKKSNIANSIVDFLGFQITNEGRGLTDTFKEKLENITAPTTLKQLQSILGLL 394 Query: 50962 *YYRRFVEKFALISAPLIRLTQKAAK--F*WTNACERSF*LLKDKLTIAPFLNLPEGPDG 50789 + R F+ F + APL L K+ K W + L KL A +L G Sbjct: 395 NFARNFIPDFTELIAPLYALIPKSTKNYVPWQAEHSTTLETLITKLNGAEYLQGRRGDKA 454 Query: 50788 YVIYCDTSGVGLGCVLMQHG--KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYL 50615 ++ + S G K I+Y S K E + + L + L Sbjct: 455 LIMKVNASYTTGYIKYYNEGEKKPISYVSIVFSKTELKFTELEKLLTTMHKGLLKALDLS 514 Query: 50614 YGFHVDIYTDHKSLQYIFK-----QKELYLRQRRWLELLKDYDVDILY 50486 G ++ +Y+ S+Q I K +K L R WL L+D + Y Sbjct: 515 MGQNIYVYSPIVSMQNIQKTPQTAKKALASRWLSWLSYLEDPRIRFFY 562 Score = 85.4 bits (208), Expect = 7e-014 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 2/203 (0%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ* 49882 YWW MKKD++ F++ C+ C+ V + K Q I PT ++ MD+I LP ++ Sbjct: 832 YWWPKMKKDVSSFLSTCNVCKMVNPLNLKPISP-QTIVHPTKPFDKFYMDYIGPLPPSEG 890 Query: 49881 K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHG--VPTSIISDRGAQFTT 49708 I V++D T P R S + ++ + L G +P + SD+G+ FT+ Sbjct: 891 Y-IHILVVVDAATGFTWLYPTRAQTS-----KATIKVLNHLTGLAIPKVLHSDQGSAFTS 944 Query: 49707 NFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFA 49528 + + K Q+ S +HPQ+ GK ER ++ +L ++ W + + ++ A Sbjct: 945 EEFAQWAKEKNIQLEFSAPYHPQSSGKVERKNSEIKKLLTKLLVGRPLKWYNLISSVQLA 1004 Query: 49527 YNNHYHSSIQMAPYEALYGRKCRSP 49453 NN + S + P++ ++G C P Sbjct: 1005 LNNTHVVSTKYTPHQLMFGIDCNLP 1029 >gb|AAB38321.1| (U78765) FeSFV polymerase [feline syncytial virus] Length = 1156 Score = 92.4 bits (226), Expect = 5e-016 Identities = 104/391 (26%), Positives = 170/391 (42%), Gaps = 17/391 (4%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVT-- 51485 Y + P +++ + DLL++G + S PV V K +G +M ++Y+ +NKVT Sbjct: 165 YHINPKAKPDIQIVINDLLKQGVLIQKESTMNTPVYPVPKPNGRWRMVLDYRAVNKVTPL 224 Query: 51484 --VKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRV 51311 V+N++ I LF K + IDL + + + D TAF + Y + V Sbjct: 225 IAVQNQHSYGIIGSLFK----GKYKTTIDLSNGFWAHPIVPEDYWITAFTWQGKQYCWTV 280 Query: 51310 LSFGMTNALAVF----MDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVL 51143 L G N+ +F +DL+ + V V+VDD+ + SE+EH ++L + L Sbjct: 281 LPQGFLNSPGLFTGDVVDLLQGIPN------VEVYVDDVYISHDSEKEHLEYLDILFNRL 334 Query: 51142 QHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA 50963 + K + + FLG I +G + E ++ T PTT +++S L L Sbjct: 335 KEAGYIVSLKKSNIANSIVDFLGFQITNEGRGLTDTFKEKLENITAPTTLKQLQSILGLL 394 Query: 50962 *YYRRFVEKFALISAPLIRLTQKAAK--F*WTNACERSF*LLKDKLTIAPFLNLPEGPDG 50789 + R F+ F + APL L K+ K W + L KL A +L G Sbjct: 395 NFARNFIPDFTELIAPLYALIPKSTKNYVPWQAEHSTTLETLITKLNGAEYLQGRRGDKA 454 Query: 50788 YVIYCDTSGVGLGCVLMQHG--KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYL 50615 ++ + S G K I+Y S K E + + L + L Sbjct: 455 LIMKVNASYTTGYIKYYNEGEKKPISYVSIVFSKTELKFTELEKLLTTMHKGLLKALDLS 514 Query: 50614 YGFHVDIYTDHKSLQYIFK-----QKELYLRQRRWLELLKDYDVDILY 50486 G ++ +Y+ S+Q I K +K L R WL L+D + Y Sbjct: 515 MGQNIYVYSPIVSMQNIQKTPQTAKKALASRWLSWLSYLEDPRIRFFY 562 Score = 85.4 bits (208), Expect = 7e-014 Identities = 56/203 (27%), Positives = 99/203 (48%), Gaps = 2/203 (0%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ* 49882 YWW MKKD++ F++ C+ C+ V + K Q I PT ++ MD+I LP ++ Sbjct: 832 YWWPKMKKDVSSFLSTCNVCKMVNPLNLKPISP-QTIVHPTKPFDKFYMDYIGPLPPSEG 890 Query: 49881 K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHG--VPTSIISDRGAQFTT 49708 I V++D T P R S + ++ + L G +P + SD+G+ FT+ Sbjct: 891 Y-IHILVVVDAATGFTWLYPTRAQTS-----KATIKVLNHLTGLAIPKVLHSDQGSAFTS 944 Query: 49707 NFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFA 49528 + + K Q+ S +HPQ+ GK ER ++ +L ++ W + + ++ A Sbjct: 945 EEFAQWAKEKNIQLEFSAPYHPQSSGKVERKNSEIKKLLTKLLVGRPLKWYNLISSVQLA 1004 Query: 49527 YNNHYHSSIQMAPYEALYGRKCRSP 49453 NN + S + P++ ++G C P Sbjct: 1005 LNNTHVVSTKYTPHQLMFGIDCNLP 1029 >emb|CAA11581.1| (AJ223851) pol gene [Feline foamy virus] Length = 1156 Score = 90.9 bits (222), Expect = 2e-015 Identities = 103/391 (26%), Positives = 171/391 (43%), Gaps = 17/391 (4%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVT-- 51485 Y + P +++ + DLL++G + S PV V K +G +M ++Y+ +NKVT Sbjct: 165 YHINPKAKPDIQIVINDLLKQGVLIQKESTMNTPVYPVPKPNGRWRMVLDYRAVNKVTPL 224 Query: 51484 --VKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRV 51311 V+N++ + LF + + IDL + + + D TAF + Y + V Sbjct: 225 IAVQNQHSYGILGSLFK----GRYKTTIDLSNGFWAHPIVPEDYWITAFTWQGKQYCWTV 280 Query: 51310 LSFGMTNALAVF----MDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVL 51143 L G N+ +F +DL+ + V V+VDD+ + SE+EH ++L + L Sbjct: 281 LPQGFLNSPGLFTGDVVDLLQGIPN------VEVYVDDVYISHDSEKEHLEYLDILFNRL 334 Query: 51142 QHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA 50963 + K + + FLG I +G + E ++ T PTT +++S L L Sbjct: 335 KEAGYIISLKKSNIANSIVDFLGFQITNEGRGLTDTFKEKLENITAPTTLKQLQSILGLL 394 Query: 50962 *YYRRFVEKFALISAPLIRLTQKAAK--F*WTNACERSF*LLKDKLTIAPFLNLPEGPDG 50789 + R F+ F + APL L K+ K W + L KL A +L +G Sbjct: 395 NFARNFIPDFTELIAPLYALIPKSTKNYVPWQIEHSTTLETLITKLNGAEYLQGRKGDKT 454 Query: 50788 YVIYCDTSGVGLGCVLMQHG--KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYL 50615 ++ + S G K I+Y S K E + + L V L Sbjct: 455 LIMKVNASYTTGYIRYYNEGEKKPISYVSIVFSKTELKFTELEKLLTTVHKGLLKALDLS 514 Query: 50614 YGFHVDIYTDHKSLQYIFK-----QKELYLRQRRWLELLKDYDVDILY 50486 G ++ +Y+ S+Q I K +K L R WL L+D + Y Sbjct: 515 MGQNIHVYSPIVSMQNIQKTPQTAKKALASRWLSWLSYLEDPRIRFFY 562 Score = 86.6 bits (211), Expect = 3e-014 Identities = 61/234 (26%), Positives = 114/234 (48%), Gaps = 2/234 (0%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 R R +++ E H+ ++ G + ++ YWW MKKDI+ F++ C+ C+ V + K Sbjct: 804 RERYKLIKEAHNISHA---GREAVLLKIQENYWWPKMKKDISSFLSTCNVCKMVNPLNLK 860 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 Q I PT ++ MD+I LP ++ + V++D T P + S Sbjct: 861 PISP-QAIVHPTKPFDKFYMDYIGPLPPSEGY-VHVLVVVDAATGFTWLYPTKAQTS--- 915 Query: 49794 YVRLYVREIVRLHG--VPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSE 49621 + ++ + L G +P + SD+G+ FT+ + + K Q+ ST +HPQ+ GK E Sbjct: 916 --KATIKVLNHLTGLAIPKVLHSDQGSAFTSEEFAQWAKERNIQLEFSTPYHPQSSGKVE 973 Query: 49620 RTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 R ++ +L ++ W + + ++ A NN + S + P++ ++G C P Sbjct: 974 RKNSEIKKLLTKLLVGRPLKWYNLISSVQLALNNTHVVSTKYTPHQLMFGIDCNLP 1029 >emb|CAA70075.1| (Y08851) pol [Feline foamy virus] Length = 1156 Score = 90.9 bits (222), Expect = 2e-015 Identities = 103/391 (26%), Positives = 171/391 (43%), Gaps = 17/391 (4%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVT-- 51485 Y + P +++ + DLL++G + S PV V K +G +M ++Y+ +NKVT Sbjct: 165 YHINPKAKPDIQIVINDLLKQGVLIQKESTMNTPVYPVPKPNGRWRMVLDYRAVNKVTPL 224 Query: 51484 --VKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRV 51311 V+N++ + LF + + IDL + + + D TAF + Y + V Sbjct: 225 IAVQNQHSYGILGSLFK----GRYKTTIDLSNGFWAHPIVPEDYWITAFTWQGKQYCWTV 280 Query: 51310 LSFGMTNALAVF----MDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVL 51143 L G N+ +F +DL+ + V V+VDD+ + SE+EH ++L + L Sbjct: 281 LPQGFLNSPGLFTGDVVDLLQGIPN------VEVYVDDVYISHDSEKEHLEYLDILFNRL 334 Query: 51142 QHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA 50963 + K + + FLG I +G + E ++ T PTT +++S L L Sbjct: 335 KEAGYIISLKKSNIANSIVDFLGFQITNEGRGLTDTFKEKLENITAPTTLKQLQSILGLL 394 Query: 50962 *YYRRFVEKFALISAPLIRLTQKAAK--F*WTNACERSF*LLKDKLTIAPFLNLPEGPDG 50789 + R F+ F + APL L K+ K W + L KL A +L +G Sbjct: 395 NFARNFIPDFTELIAPLYALIPKSTKNYVPWQIEHSTTLETLITKLNGAEYLQGRKGDKT 454 Query: 50788 YVIYCDTSGVGLGCVLMQHG--KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYL 50615 ++ + S G K I+Y S K E + + L V L Sbjct: 455 LIMKVNASYTTGYIRYYNEGEKKPISYVSIVFSKTELKFTELEKLLTTVHKGLLKALDLS 514 Query: 50614 YGFHVDIYTDHKSLQYIFK-----QKELYLRQRRWLELLKDYDVDILY 50486 G ++ +Y+ S+Q I K +K L R WL L+D + Y Sbjct: 515 MGQNIHVYSPIVSMQNIQKTPQTAKKALASRWLSWLSYLEDPRIRFFY 562 Score = 86.6 bits (211), Expect = 3e-014 Identities = 61/234 (26%), Positives = 114/234 (48%), Gaps = 2/234 (0%) Frame = -3 Query: 50154 RLRRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQK 49975 R R +++ E H+ ++ G + ++ YWW MKKDI+ F++ C+ C+ V + K Sbjct: 804 RERYKLIKEAHNISHA---GREAVLLKIQENYWWPKMKKDISSFLSTCNVCKMVNPLNLK 860 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 Q I PT ++ MD+I LP ++ + V++D T P + S Sbjct: 861 PISP-QAIVHPTKPFDKFYMDYIGPLPPSEGY-VHVLVVVDAATGFTWLYPTKAQTS--- 915 Query: 49794 YVRLYVREIVRLHG--VPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSE 49621 + ++ + L G +P + SD+G+ FT+ + + K Q+ ST +HPQ+ GK E Sbjct: 916 --KATIKVLNHLTGLAIPKVLHSDQGSAFTSEEFAQWAKERNIQLEFSTPYHPQSSGKVE 973 Query: 49620 RTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 R ++ +L ++ W + + ++ A NN + S + P++ ++G C P Sbjct: 974 RKNSEIKKLLTKLLVGRPLKWYNLISSVQLALNNTHVVSTKYTPHQLMFGIDCNLP 1029 >gb|AAF71150.1| (AF152540) pol protein integrase region [Abies alba] Length = 131 Score = 89.3 bits (218), Expect = 5e-015 Identities = 49/132 (37%), Positives = 75/132 (56%) Frame = -3 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 E ++MDFI GL +++ K I V++DRLTK AHF + + A ++ + +LH Sbjct: 1 EKVSMDFIIGLSKSEGK-SVIPVVVDRLTKYAHFCALSHPFQASTMATAFMEIVQKLHDN 59 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 P I+SDR FT +FW LGTQ+ S+++H Q+DG+++ + LE+ LR D Sbjct: 60 PKIIVSDRDPIFTRHFWTKLFSCLGTQLAHSSSYHSQSDGQTKIVNKCLEEYLRCFASDK 119 Query: 49569 KGSWDDHLPLIE 49534 + W LPL E Sbjct: 120 QTHWVKWLPLAE 131 Score = 52.7 bits (124), Expect = 5e-004 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 2/131 (1%) Frame = +2 Query: 10391 EIINMDFIKCFQ*SRRQHNSIF-VIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHG 10567 E ++MDFI S+ + S+ V+VDRLTK +HF +S A A +++ V++LH Sbjct: 1 EKVSMDFIIGL--SKSEGKSVIPVVVDRLTKYAHFCALSHPFQASTMATAFMEIVQKLHD 58 Query: 10568 FLVFIISNRSAYFTAQLWKSFQKSQGSKL-N*VLLFILKEVEKQCTIKTLEYMLRACVID 10744 I+S+R FT W G++L + + + + K LE LR D Sbjct: 59 NPKIIVSDRDPIFTRHFWTKLFSCLGTQLAHSSSYHSQSDGQTKIVNKCLEEYLRCFASD 118 Query: 10745 FKVNWDDNMPLIE 10783 + +W +PL E Sbjct: 119 KQTHWVKWLPLAE 131 >gb|AAC54861.1| (U26458) gag-pol polyprotein [Snakehead retrovirus] Length = 2017 Score = 87.4 bits (213), Expect = 2e-014 Identities = 102/395 (25%), Positives = 177/395 (43%), Gaps = 23/395 (5%) Frame = -2 Query: 51676 PIFIPPYRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQL 51497 P I Y + A +KE + LLE+G +R S + + V K DGS +++I+Y+ L Sbjct: 805 PKMIKQYPVPDASHASIKETVEALLEQGVLRKCNSTVNSAIWPVGKPDGSWRLTIDYRPL 864 Query: 51496 NKVTVKNRYP-LPRIDDLFDQLQGA-KCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHY 51323 N V YP + +LF +L+ + +S +D+ + + +R+ E AF Y Sbjct: 865 NSA-VSCPYPTVASTPELFAKLEKKYQVYSSLDISNGFWSIRLEEECQYLFAFTFDTQQY 923 Query: 51322 DFRVLSFGMTNALAVFMDLMNRVFKPFLDMF------VIVFVDDILVYSRSEEEHADHLR 51161 + L G + +F + ++ +VDDIL+ S + H L Sbjct: 924 TWTRLPQGFHASPGIFHQALYNGLASCKTAIESQGCKLLQYVDDILLMSEDRDHHLRSLA 983 Query: 51160 TVLRVLQHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVR 50981 +L+ L+ + K F + +LG +GAD + + + ++T P T +R Sbjct: 984 ILLQGLKDLGVKINPKKSHFCKDQVQYLGVNVGADTRSLIDARSQLIRTLDIPLTVQGLR 1043 Query: 50980 SFLELA*YYRRFVEKFALISAPLIRL----TQKAAKF*WTNACERSF*LLKDKLTIAPFL 50813 S L L + R ++ +F+ + L + + K WT F LLKD++ A L Sbjct: 1044 SALGLFNFCRAWIPEFSRKTQSLYDMLKGDCKSTDKLKWTEDNLNKFKLLKDEVASACVL 1103 Query: 50812 NLPEGPDGYVIYCDTSGVGLG---CVLMQHG-----KVIAYASRQLRKHENNYPTHDLKL 50657 L PD + + G+ G C L+Q V+ + SR++ E+N + Sbjct: 1104 GL---PDPTLPFRHLIGIRQGHFLCSLVQKDDNGMWHVLGFYSRKMTPVESNLGICEQYA 1160 Query: 50656 EIVVHALKIWRHYLYGF-HVDIYTDHKSLQYIFKQKELYLRQR--RWLELLKDYDVDI 50492 E A+ + + GF I T H +++I + QR RW +L D+ I Sbjct: 1161 ECAAWAISAC-NLVSGFGRKIIVTSHSPVKFILQTTPNVSNQRLARWHRILTQEDITI 1217 Score = 57.0 bits (135), Expect = 2e-005 Identities = 34/104 (32%), Positives = 53/104 (50%) Frame = -3 Query: 49779 VREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLE 49600 + E + + GVP SI SD G FT+ + + G + + +HPQ+ GK ER + L+ Sbjct: 1728 LEEHISIWGVPYSIQSDNGTAFTSKAMQEWANTYGIEWKVGAIYHPQSQGKVERKHRLLK 1787 Query: 49599 DMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGR 49468 D L+ + + K +W LP I + N H Q + YE + GR Sbjct: 1788 DRLKRATHEGK-NWVQALPSI-LLFINSMHPRDQFSAYELMTGR 1829 >gb|AAF64414.1|AF201902_2 (AF201902) Pol [equine foamy virus] Length = 1153 Score = 86.2 bits (210), Expect = 4e-014 Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 4/232 (1%) Frame = -3 Query: 50148 RRQVMGEEHSACYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEH--QK 49975 R +++ H S + G MY + YWW + KDI++++ C+NC ++ K Sbjct: 804 RVKILELAHKGPGSGHLGKNTMYIKILNKYWWPNLIKDISKYIRTCTNCIITNTDNVPNK 863 Query: 49974 SGGLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAED 49795 S + ++ +P K+ M D+I LP + + VI+D T P + + Sbjct: 864 SYIVQEKTGLPFQKYYM---DYIGPLPPSDGY-YHVLVIVDEGTGYTWLYPTKAQTA--- 916 Query: 49794 YVRLYVREIVRLHG--VPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSE 49621 V+ + L G +P + SD+G+ FT+ ++ K G Q+ S+ +HPQ+ GK E Sbjct: 917 --NATVKALNHLTGTAIPKVLHSDQGSAFTSATLVAWAKDKGIQMEYSSPYHPQSSGKVE 974 Query: 49620 RTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 R ++ +L ++ W +P ++ A NN ++ I P++ +YG C P Sbjct: 975 RKNSEIKRLLTKLLVGRPTKWYPLIPTVQLALNNTPNAKIGKTPHQLMYGVDCNLP 1030 Score = 82.7 bits (201), Expect = 4e-013 Identities = 65/252 (25%), Positives = 116/252 (45%) Frame = -2 Query: 51658 YRMAPAELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVK 51479 YR+ P +++ + DLL++G ++ TSP PV V K DG +M ++Y+ +NKVT Sbjct: 165 YRINPKAKADIQIVIDDLLKQGVLKQQTSPMNTPVYPVPKPDGRWRMVLDYRAVNKVTPA 224 Query: 51478 NRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFRVLSFG 51299 L + L + + +DL + + ++E+D T+F Y + L G Sbjct: 225 IATQNCHSASLLNTLYRGQYKTTLDLANGFWAHPIQESDQWITSFTWNGKSYVWTTLPQG 284 Query: 51298 MTNALAVFMDLMNRVFKPFLDMFVIVFVDDILVYSRSEEEHADHLRTVLRVLQHQKLYAM 51119 N+ A+F + + K + V V+VDD+ + +EEEH + + + LQ Sbjct: 285 FLNSPALFTADVVDLLKDIPN--VEVYVDDVYFSNDTEEEHLKTMDLLFQKLQTAGYIVS 342 Query: 51118 FSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVE 50939 K + ++ FLG I G + + T P T +++S L L + R F+ Sbjct: 343 LKKSKLGQHTVDFLGFQITQTGRGLTDSYKSKLLDITPPNTLKQLQSILGLLNFARNFIP 402 Query: 50938 KFALISAPLIRL 50903 ++ + PL +L Sbjct: 403 NYSELITPLYQL 414 >gb|AAF71146.1| (AF152536) pol protein integrase region [Abies alba] Length = 123 Score = 85.4 bits (208), Expect = 7e-014 Identities = 49/132 (37%), Positives = 75/132 (56%) Frame = -3 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 E ++MDFITGLP+++ K I V++DR+TK AHF + +T ++ I +LHG Sbjct: 1 EKVSMDFITGLPKSEGK-SVIMVVVDRITKYAHFSSMVST--------AFMETIQKLHGN 51 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 P ++SD+ F +FW LGTQ+ ++++HPQ D K++ + LE LR D Sbjct: 52 PNIVVSDKDPIFIGHFWTELFSCLGTQLAHNSSYHPQFDRKNKIMNKCLEGYLRFFASDK 111 Query: 49569 KGSWDDHLPLIE 49534 + W LPL E Sbjct: 112 QTRWVKWLPLAE 123 Score = 44.5 bits (103), Expect = 0.14 Identities = 35/131 (26%), Positives = 62/131 (46%), Gaps = 1/131 (0%) Frame = +2 Query: 10391 EIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGF 10570 E ++MDFI S + + I V+VDR+TK +HF + ST +++ +++LHG Sbjct: 1 EKVSMDFITGLPKSEGK-SVIMVVVDRITKYAHFSSMVST--------AFMETIQKLHGN 51 Query: 10571 LVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILK-EVEKQCTIKTLEYMLRACVIDF 10747 ++S++ F W G++L + + + + + K LE LR D Sbjct: 52 PNIVVSDKDPIFIGHFWTELFSCLGTQLAHNSSYHPQFDRKNKIMNKCLEGYLRFFASDK 111 Query: 10748 KVNWDDNMPLIE 10783 + W +PL E Sbjct: 112 QTRWVKWLPLAE 123 >gb|AAF71148.1| (AF152538) pol protein integrase region [Abies alba] Length = 131 Score = 83.5 bits (203), Expect = 3e-013 Identities = 46/132 (34%), Positives = 72/132 (53%) Frame = -3 Query: 49929 EMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGV 49750 E ++MDFI GLP+++ K I + +DRLTK AHF + + A ++ I ++HG Sbjct: 1 EKVSMDFIIGLPKSKGK-SVILLAVDRLTKHAHFCELSHHFKASTISIAFIETIQKIHGN 59 Query: 49749 PTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDF 49570 P I+SD FT FW LGT+++ +++HP +GK+E + L+ L + D Sbjct: 60 PKIIVSDIDPIFTRQFWTKLFSFLGTKLDYISSYHPHFNGKTEIVNKCLKCYLHFCVSDK 119 Query: 49569 KGSWDDHLPLIE 49534 + W LPL E Sbjct: 120 QIQWVKWLPLAE 131 Score = 57.8 bits (137), Expect = 1e-005 Identities = 39/131 (29%), Positives = 67/131 (50%), Gaps = 1/131 (0%) Frame = +2 Query: 10391 EIINMDFIKCFQ*SRRQHNSIFVIVDRLTKSSHFLQVSSTNLAEDYAKLYIQKVERLHGF 10570 E ++MDFI S+ + + I + VDRLTK +HF ++S A + +I+ ++++HG Sbjct: 1 EKVSMDFIIGLPKSKGK-SVILLAVDRLTKHAHFCELSHHFKASTISIAFIETIQKIHGN 59 Query: 10571 LVFIISNRSAYFTAQLWKSFQKSQGSKLN*VLLFILK-EVEKQCTIKTLEYMLRACVIDF 10747 I+S+ FT Q W G+KL+ + + + + K L+ L CV D Sbjct: 60 PKIIVSDIDPIFTRQFWTKLFSFLGTKLDYISSYHPHFNGKTEIVNKCLKCYLHFCVSDK 119 Query: 10748 KVNWDDNMPLIE 10783 ++ W +PL E Sbjct: 120 QIQWVKWLPLAE 131 >gb|AAD30054.1| (AF133052) pol polyprotein [walleye epidermal hyperplasia virus type 2] Length = 1246 Score = 81.9 bits (199), Expect = 8e-013 Identities = 98/414 (23%), Positives = 172/414 (40%), Gaps = 19/414 (4%) Frame = -2 Query: 51823 RVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAP 51644 + H ++ T + L++ +FPD KI + ++ P+ P R P Sbjct: 125 KYHQLSLRYDTPEEKLLL-QFPDSLWASSPTDIGKMKIP---PIKIEVLPLPCPRIRQYP 180 Query: 51643 A---ELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNR 51473 ++ L+ + LL +G + S P+ ++K EY+ ++ + N Sbjct: 181 LPKEKVNGLRPMIESLLAQGVLAECHSSCNTPIFPIQKPGRQ-----EYRMIHDLRAINE 235 Query: 51472 YPLPRI-------DDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFR 51314 P L + K F+ IDL +++ V V AF Y + Sbjct: 236 IVAPLTAVVASPTTVLANLSPDMKWFTVIDLSNAFFSVPVHPDSQYLFAFTFEGRQYTWT 295 Query: 51313 VLSFGMTNALAVFMDLMNRVFKPFLDMF---VIVFVDDILVYSRSEEEHADHLRTVLRVL 51143 VL G ++ +F + D V +++DD+L+ S +++ + T+L L Sbjct: 296 VLPQGFIHSPTLFSQALFSSLSKIKDSLTSEVCIYMDDVLIASTTKDINIKDTVTLLHHL 355 Query: 51142 QHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA 50963 + K + T + +LG ++ G + + E V ++ PTT +VR+FL LA Sbjct: 356 ADEGHKVSQKKLQLCKTEVIYLGQLLSDRGREILPDRKETVSQFSSPTTVRQVRAFLGLA 415 Query: 50962 *YYRRFVEKFALISAPLIRLTQKAAK--F*WTNACERSF*LLKDKLTIAPFLNLPEGPDG 50789 Y R ++ ++ S L L +K + F T +F LK L AP L +P+ Sbjct: 416 GYCRHWIPDYSEQSKYLEELLKKEVEEPFSLTEKQTEAFQKLKQSLITAPVLAIPDYKKD 475 Query: 50788 YVIYCD-TSGVGLGCVLMQHG---KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRH 50621 + +Y T V + + + G + IAY S +L E P + L Sbjct: 476 FELYTSHTEHVAIAVLSQKQGGRSRPIAYLSAKLDAIERGLPPCLRACASIHKNLTQADS 535 Query: 50620 YLYGFHVDIYTDH 50582 +L G V IYT H Sbjct: 536 FLLGRPVKIYTTH 548 Score = 50.0 bits (117), Expect = 0.003 Identities = 46/197 (23%), Positives = 83/197 (41%), Gaps = 4/197 (2%) Frame = -3 Query: 50058 WWDGM-KKDIAEFVAQCSNC--Q*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRT 49888 WW + K I E +A+C+ C K + +K G +P + + +DF+ + Sbjct: 896 WWHPLASKSIDEIMAKCAVCLKHNPKYKRRKGG----HRPLPNGPFSHLQIDFV---HMS 948 Query: 49887 Q*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTT 49708 K VI+D +K A+ + +++I+ G+P I SD+G FT+ Sbjct: 949 DKKPMYALVIVDVFSKWPEVFSCNNE-EAKTVCNILMQDIIPRWGLPEQIDSDQGTHFTS 1007 Query: 49707 NFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFK-GSWDDHLPLIEF 49531 + +G L HPQ+ G ER +T++ + + + W LP + Sbjct: 1008 KITQELASSVGVSWKLHCPGHPQSSGMVERLNRTIKTKIEKAKTHLQLDKWYKVLPFVLM 1067 Query: 49530 AYNNHYHSSIQMAPYEALYGR 49468 +++PYE + GR Sbjct: 1068 EL-RAIPKKNKLSPYEIVMGR 1087 >gb|AAC59311.1| (AF014793) pol polyprotein [walleye epidermal hyperplasia virus type 2] Length = 1246 Score = 81.9 bits (199), Expect = 8e-013 Identities = 98/414 (23%), Positives = 172/414 (40%), Gaps = 19/414 (4%) Frame = -2 Query: 51823 RVHDINAEAPTLQSVLVVDEFPDVFXXXXXXXXXXXKIEFTIDVLLDTQPIFIPPYRMAP 51644 + H ++ T + L++ +FPD KI + ++ P+ P R P Sbjct: 125 KYHQLSLRYDTPEEKLLL-QFPDSLWASSPTDIGKMKIP---PIKIEVLPLPCPRIRQYP 180 Query: 51643 A---ELKELKEQLRDLLEKGFIRPSTSPWGAPVLFVRKKDGSLQMSIEYKQLNKVTVKNR 51473 ++ L+ + LL +G + S P+ ++K EY+ ++ + N Sbjct: 181 LPKEKVNGLRPMIESLLAQGVLAECHSSCNTPIFPIQKPGRQ-----EYRMIHDLRAINE 235 Query: 51472 YPLPRI-------DDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAFWTRYGHYDFR 51314 P L + K F+ IDL +++ V V AF Y + Sbjct: 236 IVAPLTAVVASPTTVLANLSPDMKWFTVIDLSNAFFSVPVHPDSQYLFAFTFEGRQYTWT 295 Query: 51313 VLSFGMTNALAVFMDLMNRVFKPFLDMF---VIVFVDDILVYSRSEEEHADHLRTVLRVL 51143 VL G ++ +F + D V +++DD+L+ S +++ + T+L L Sbjct: 296 VLPQGFIHSPTLFSQALFSSLSKIKDSLTSEVCIYMDDVLIASTTKDINIKDTVTLLHHL 355 Query: 51142 QHQKLYAMFSKCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA 50963 + K + T + +LG ++ G + + E V ++ PTT +VR+FL LA Sbjct: 356 ADEGHKVSQKKLQLCKTEVIYLGQLLSDRGREILPDRKETVSQFSSPTTVRQVRAFLGLA 415 Query: 50962 *YYRRFVEKFALISAPLIRLTQKAAK--F*WTNACERSF*LLKDKLTIAPFLNLPEGPDG 50789 Y R ++ ++ S L L +K + F T +F LK L AP L +P+ Sbjct: 416 GYCRHWIPDYSEQSKYLEELLKKEVEEPFSLTEKQTEAFQKLKQSLITAPVLAIPDYKKD 475 Query: 50788 YVIYCD-TSGVGLGCVLMQHG---KVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRH 50621 + +Y T V + + + G + IAY S +L E P + L Sbjct: 476 FELYTSHTEHVAIAVLSQKQGGRSRPIAYLSAKLDAIERGLPPCLRACASIHKNLTQADS 535 Query: 50620 YLYGFHVDIYTDH 50582 +L G V IYT H Sbjct: 536 FLLGRPVKIYTTH 548 Score = 50.0 bits (117), Expect = 0.003 Identities = 46/197 (23%), Positives = 83/197 (41%), Gaps = 4/197 (2%) Frame = -3 Query: 50058 WWDGM-KKDIAEFVAQCSNC--Q*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRT 49888 WW + K I E +A+C+ C K + +K G +P + + +DF+ + Sbjct: 896 WWHPLASKSIDEIMAKCAVCLKHNPKYKRRKGG----HRPLPNGPFSHLQIDFV---HMS 948 Query: 49887 Q*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTT 49708 K VI+D +K A+ + +++I+ G+P I SD+G FT+ Sbjct: 949 DKKPMYALVIVDVFSKWPEVFSCNNE-EAKTVCNILMQDIIPRWGLPEQIDSDQGTHFTS 1007 Query: 49707 NFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFK-GSWDDHLPLIEF 49531 + +G L HPQ+ G ER +T++ + + + W LP + Sbjct: 1008 KITQELASSVGVSWKLHCPGHPQSSGMVERLNRTIKTKIEKAKTHLQLDKWYKVLPFVLM 1067 Query: 49530 AYNNHYHSSIQMAPYEALYGR 49468 +++PYE + GR Sbjct: 1068 EL-RAIPKKNKLSPYEIVMGR 1087 >dbj|BAA92690.1| (AB032718) pol polyprotein [Bombyx mori] Length = 596 Score = 81.1 bits (197), Expect = 1e-012 Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 5/232 (2%) Frame = -3 Query: 50061 YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSGGLLQEIEIPTWKWEMINMDFITGLPRTQ* 49882 ++W M KDI + C CQ KI L ++ ++E I++D + LP + Sbjct: 266 FFWPNMNKDIGMWAKPCIRCQESKIYRHTISDLGNFVD--AGRFEHIHVDIVGPLPTSPQ 323 Query: 49881 K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYVRLYVREIVRLHGVPTSIISDRGAQFTTNF 49702 IIDR T+ PV + + +Y I R G P I SD+G QF +N Sbjct: 324 GFRYCITIIDRCTRWPEAFPVHDITADKVAKTIYDGWITRF-GCPVRITSDQGRQFESNL 382 Query: 49701 WRSFQKGLGTQVNLSTTFHPQTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYN 49522 + K LG +T +HPQ++G ER ++L+ L + D SW D L F Sbjct: 383 FLKLTKLLGINKICTTPYHPQSNGAVERWHRSLKVALMTRLND--TSWVDELSTAMFGLR 440 Query: 49521 NHYHSSIQMAPYEALYGRKCRSPIGWFDVG-ETKLIGP----DMIQQVVDKVKLIQE 49366 + ++ + YG+ R P ++DV E L P + IQ+++ + ++E Sbjct: 441 ASVRTDSGVSAAQLTYGKNIRLPGDFYDVSKEENLCEPLSLVNKIQKIIKSFRPVRE 497 Score = 62.8 bits (150), Expect = 4e-007 Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 9/147 (6%) Frame = -2 Query: 50887 KF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGLGCVLMQH----GKVI 50720 K WT++ E +F K L A L P + D S +G VL Q + + Sbjct: 15 KIVWTDSAENAFEKCKIDLQQALTLAHPLSTAPLALMTDASDTCMGAVLQQKVNGVWQPL 74 Query: 50719 AYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTDHKSLQYIFKQ----- 50555 Y SR+L E Y T+D +L + A+ +R G + +YTDHK L + F + Sbjct: 75 GYFSRKLSPAEQKYCTYDRELLAIYKAMIYFRKLFEGRPLTVYTDHKPLCHAFSKICKDD 134 Query: 50554 KELYLRQRRWLELLKDYDVDILYHLGKANVVVDALS 50447 KE R R L + + Y DI Y G+ N+V DALS Sbjct: 135 KETPRRARHLLFIRRIY-YDIQYISGQDNIVADALS 169 >gb|AAD51320.1| (AF169187) polymerase [Triticum aestivum] Length = 235 Score = 80.4 bits (195), Expect = 2e-012 Identities = 42/110 (38%), Positives = 61/110 (55%) Frame = -2 Query: 50764 GVGLGCVLMQHGKVIAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFHVDIYTD 50585 G G+G VL Q + IAY +L + NYP +D +L +V L W HYL I+TD Sbjct: 5 GNGIGGVLTQEKRPIAYFREKLSGAQLNYPIYDKELYALVRVLHEWEHYLRPHEFIIHTD 64 Query: 50584 HKSLQYIFKQKELYLRQRRWLELLKDYDVDILYHLGKANVVVDALSRKSM 50435 H++L+Y+ Q +L R +W E ++ + I Y GK N++ DALS M Sbjct: 65 HETLKYLKGQTKLNKRHAKWSEFIESFPYVIKYIKGKENIIADALSHICM 114 Score = 32.1 bits (71), Expect(2) = 4.2 Identities = 17/40 (42%), Positives = 24/40 (59%) Frame = +3 Query: 9639 NYPTHDIELASLVFSLKIWCHFLYGIRVDIFTDNKSL*YV 9758 NYP +D EL +LV L W H+L I TD+++L Y+ Sbjct: 32 NYPIYDKELYALVRVLHEWEHYLRPHEFIIHTDHETLKYL 71 Score = 26.2 bits (56), Expect(2) = 4.2 Identities = 11/42 (26%), Positives = 20/42 (47%) Frame = +2 Query: 9776 NLKQRRWLELPKDYDMSILYHPGKANVVTHSLRRLSMGCTSI 9901 N + +W E + + I Y GK N++ +L + M T + Sbjct: 78 NKRHAKWSEFIESFPYVIKYIKGKENIIADALSHICMLVTQL 119 >dbj|BAA85207.1| (AP000570) ESTs C26347(C12145),AU078074(C12145) correspond to a region of the predicted gene.~Similar to prpol; Zea mays retrotransposon Cinful-1. (AF049110) [Oryza sativa] Length = 1583 Score = 80.4 bits (195), Expect = 2e-012 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 5/231 (2%) Frame = -3 Query: 50145 RQVMGEEHSA-CYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG 49969 RQ++ + HS C + T + R ++W + D + V C CQ + Sbjct: 1240 RQLLQDIHSGICGNHAAARTIVGKAYRQGFFWPTVVSDAEKVVRTCEGCQFFARQIHLPA 1299 Query: 49968 GLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYV 49789 LQ I P+W + ++ +D + + ++V +D+ +K PV T + D Sbjct: 1300 QELQTIP-PSWPFAVLGLDMVGPFKKVTGGFTHLFVAVDKFSKWIEAKPVVTITA--DKA 1356 Query: 49788 RLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQ 49609 R + IV GVP II+D G QFT + ++ F + G ++ ++ HP ++G+ ER Sbjct: 1357 RDFFISIVHRFGVPNRIITDNGTQFTGDVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1416 Query: 49608 TLEDMLRASIID----FKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 + ++A + D + G W D LP + ++ + +P+ +YG + P Sbjct: 1417 MVLQGIKARVFDRLCPYDGKWVDQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLP 1472 Score = 46.9 bits (109), Expect = 0.027 Identities = 40/173 (23%), Positives = 71/173 (40%), Gaps = 10/173 (5%) Frame = -2 Query: 51112 KCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKF 50933 KC F + S LG ++ G++ + +KI A+ P++ + + RFV + Sbjct: 772 KCTFGVLSGKLLGFMVSRRGLQANPEKINAILNMKPPSSQKDFQKPTGCMAALSRFVSRL 831 Query: 50932 ALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGL 50753 P +L +K F W +++F K LT P L P + ++Y + + Sbjct: 832 GERGMPFFKLLKKTDNFQWGPEAQQAFEDFKKLLTTPPVLASPHPQETLLLYVSATSQVV 891 Query: 50752 GCVLM----QHGKV------IAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFH 50603 V++ + G V I + S L YP L V+ ++ HY Sbjct: 892 STVMVVEREEDGHVQKVQRPIYFISEVLADSTTRYPHVQKLLYGVLITVRKLSHYFQSHS 951 Query: 50602 VDI 50594 V + Sbjct: 952 VTV 954 >dbj|BAA84632.1| (AP000492) ESTs C26347(C12145),AU078074(C12145) correspond to a region of the predicted gene.~similar to prpol; Zea mays retrotransposon Cinful-1. (AF049110) [Oryza sativa] Length = 1583 Score = 80.4 bits (195), Expect = 2e-012 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 5/231 (2%) Frame = -3 Query: 50145 RQVMGEEHSA-CYSINPGSTKMYHDLRCLYWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG 49969 RQ++ + HS C + T + R ++W + D + V C CQ + Sbjct: 1240 RQLLQDIHSGICGNHAAARTIVGKAYRQGFFWPTVVSDAEKVVRTCEGCQFFARQIHLPA 1299 Query: 49968 GLLQEIEIPTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRTTYSAEDYV 49789 LQ I P+W + ++ +D + + ++V +D+ +K PV T + D Sbjct: 1300 QELQTIP-PSWPFAVLGLDMVGPFKKVTGGFTHLFVAVDKFSKWIEAKPVVTITA--DKA 1356 Query: 49788 RLYVREIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHPQTDGKSERTIQ 49609 R + IV GVP II+D G QFT + ++ F + G ++ ++ HP ++G+ ER Sbjct: 1357 RDFFISIVHRFGVPNRIITDNGTQFTGDVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1416 Query: 49608 TLEDMLRASIID----FKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKCRSP 49453 + ++A + D + G W D LP + ++ + +P+ +YG + P Sbjct: 1417 MVLQGIKARVFDRLCPYDGKWVDQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLP 1472 Score = 46.9 bits (109), Expect = 0.027 Identities = 40/173 (23%), Positives = 71/173 (40%), Gaps = 10/173 (5%) Frame = -2 Query: 51112 KCEFWLTSLAFLGHIIGADGIRVDTQKIEAVKTWTRPTTPTEVRSFLELA*YYRRFVEKF 50933 KC F + S LG ++ G++ + +KI A+ P++ + + RFV + Sbjct: 772 KCTFGVLSGKLLGFMVSRRGLQANPEKINAILNMKPPSSQKDFQKPTGCMAALSRFVSRL 831 Query: 50932 ALISAPLIRLTQKAAKF*WTNACERSF*LLKDKLTIAPFLNLPEGPDGYVIYCDTSGVGL 50753 P +L +K F W +++F K LT P L P + ++Y + + Sbjct: 832 GERGMPFFKLLKKTDNFQWGPEAQQAFEDFKKLLTTPPVLASPHPQETLLLYVSATSQVV 891 Query: 50752 GCVLM----QHGKV------IAYASRQLRKHENNYPTHDLKLEIVVHALKIWRHYLYGFH 50603 V++ + G V I + S L YP L V+ ++ HY Sbjct: 892 STVMVVEREEDGHVQKVQRPIYFISEVLADSTTRYPHVQKLLYGVLITVRKLSHYFQSHS 951 Query: 50602 VDI 50594 V + Sbjct: 952 VTV 954 >gb|AAD22157.1|AF061282_10 (AF061282) hypothetical protein [Sorghum bicolor] Length = 416 Score = 79.6 bits (193), Expect = 4e-012 Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 2/212 (0%) Frame = -1 Query: 1265 APAPQVPEVQHAASVAPRMDASLEISTFPRLTTGPIMTSDQHELFSKFLKLNPPVFKVAQ 1086 AP P P + R+ +L R GP +D FLKL PP F A Sbjct: 69 APPPPPPSLSEVMDRQTRLLEALADGILRRPGGGP--PNDFQRKLEGFLKLRPPTFDCAD 126 Query: 1085 SED--AYDFLVDCHELLHKMGIVERFGVEFVTYQFKGNAKMWWRSHVGCQPAQAPPMTWA 912 + A D+L + + L + V +Q G A+ WW S+ +TWA Sbjct: 127 DDPIAAEDWLREIEKKLDLTTCTDEECVGVAAHQLTGAARAWWDSYSDTHENPGG-ITWA 185 Query: 911 SFSSLFMEKYIPRTLRDRRRDEFFSLEQGRMSLTAYEAKFRASSRYATQLCFSPKERISR 732 F+ F E+++P + D + +EF ++ QG + Y +F + RYA + K+++ Sbjct: 186 EFTEAFREQHVPEGVMDAKVEEFRNISQGTQKVQEYATRFTRTMRYAPDESNTEKKKMYF 245 Query: 731 FVKGLR*ELRISALQVAATTKSFQEVVDFVIEVE 630 F KGL L+++ T + +E+++ +E+E Sbjct: 246 FKKGLSTRLKVAL--SGHTCYTLREMINKALEME 277 Score = 52.3 bits (123), Expect = 6e-004 Identities = 32/112 (28%), Positives = 51/112 (44%) Frame = +1 Query: 6979 VEEFKRIFEVIHVVDYERVELV*HELKCVAITWLDQWKEGRANNATHPWWACFEKAFFER 7158 + E ++ ++ D E V + H+L A W D + + N W A F +AF E+ Sbjct: 136 LREIEKKLDLTTCTDEECVGVAAHQLTGAARAWWDSYSDTHENPGGITW-AEFTEAFREQ 194 Query: 7159 FFPRELNEEKVREFLTFKLDCINVHEYGLKFPKLSRYAP*MVNDMERRVSFF 7314 P + + KV EF V EY +F + RYAP N ++++ FF Sbjct: 195 HVPEGVMDAKVEEFRNISQGTQKVQEYATRFTRTMRYAPDESNTEKKKMYFF 246 Score = 51.9 bits (122), Expect = 8e-004 Identities = 66/265 (24%), Positives = 115/265 (42%), Gaps = 14/265 (5%) Frame = -1 Query: 53621 RAHAQFMPSIMLQSESSATPTPP-EDL-REAAAPVWGTPLAPKAPVPEPSAPKSGAEDRA 53448 R A P + + E A P E+L R A +P G AP P P S Sbjct: 29 RGAASPAPRLEREVEQPAPGEPALEELHRRARSPQLGDNDAPPPPPPSLS--------EV 80 Query: 53447 MTDAV*LLTRLVAVHVHSHGLGVDHADRSDNLRARDFLSCNPTEFFGSRPQDDP---QKF 53277 M LL L + G G + + + FL P F DDP + + Sbjct: 81 MDRQTRLLEALADGILRRPGGGPPNDFQR---KLEGFLKLRPPTF--DCADDDPIAAEDW 135 Query: 53276 ICQMQRTLRISKASETESVELATYRLRDVDINWYESWELSRGEGAPPMIWDEFVEAFQVH 53097 + ++++ L ++ ++ E V +A ++L W++S+ + E + W EF EAF+ Sbjct: 136 LREIEKKLDLTTCTDEECVGVAAHQLTGAARAWWDSYSDTH-ENPGGITWAEFTEAFREQ 194 Query: 53096 FLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYAPTIVADMADRVHRYVMGLDRYL 52917 + + A+V+ F ++ + + V+EY+ F RYAP +++ + GL L Sbjct: 195 HVPEGVMDAKVEEFRNISQGTQKVQEYATRFTRTMRYAPDESNTEKKKMYFFKKGLSTRL 254 Query: 52916 -----NYSCMA----VTLQPSMDIARVQAYAQGVEDRHR 52827 ++C + M+ R++A AQ E + R Sbjct: 255 KVALSGHTCYTLREMINKALEMERDRLEADAQYKEKKRR 293 >gb|AAG12508.1|AC074283_19 (AC074283) Similar to part of a polyprotein, gypsy-like [Oryza sativa] Length = 361 Score = 77.3 bits (187), Expect = 2e-011 Identities = 50/170 (29%), Positives = 87/170 (50%), Gaps = 1/170 (0%) Frame = -1 Query: 1130 SKFLKLNPPVFKVAQSE-DAYDFLVDCHELLHKMGIVERFGVEFVTYQFKGNAKMWWRSH 954 + FL++ PP F + +A D+L + L + + V F ++Q +G A WW H Sbjct: 57 ANFLRVRPPTFSSTTNPVEAGDWLHIIEKKLVLLQCTNQEKVVFTSHQLQGPASEWW-DH 115 Query: 953 VGCQPAQAPPMTWASFSSLFMEKYIPRTLRDRRRDEFFSLEQGRMSLTAYEAKFRASSRY 774 A+ P+TW F F + +IP + ++ EF +L+Q ++T Y +F +RY Sbjct: 116 FRMNRAKGQPITWEEFIEGFRKTHIPAGVVTLKKREFRTLKQKDHTVTEYLHEFNRLARY 175 Query: 773 ATQLCFSPKERISRFVKGLR*ELRISALQVAATTKSFQEVVDFVIEVEGVK 621 A + + KER +F++GL+ EL + ++ FQ++VD I +E K Sbjct: 176 ALEDVRTDKERQEKFLEGLKDELSVKL--ISHDYSDFQQLVDKAIRLEDKK 224 Score = 54.3 bits (128), Expect = 2e-004 Identities = 32/138 (23%), Positives = 68/138 (49%) Frame = -1 Query: 53342 DFLSCNPTEFFGSRPQDDPQKFICQMQRTLRISKASETESVELATYRLRDVDINWYESWE 53163 +FL P F + + ++ +++ L + + + E V +++L+ W++ + Sbjct: 58 NFLRVRPPTFSSTTNPVEAGDWLHIIEKKLVLLQCTNQEKVVFTSHQLQGPASEWWDHFR 117 Query: 53162 LSRGEGAPPMIWDEFVEAFQVHFLLPEMERARVDRFLHLRKNGRSVREYSLEFD*LTRYA 52983 ++R +G P + W+EF+E F+ + + + F L++ +V EY EF+ L RYA Sbjct: 118 MNRAKGQP-ITWEEFIEGFRKTHIPAGVVTLKKREFRTLKQKDHTVTEYLHEFNRLARYA 176 Query: 52982 PTIVADMADRVHRYVMGL 52929 V +R +++ GL Sbjct: 177 LEDVRTDKERQEKFLEGL 194 Score = 46.5 bits (108), Expect = 0.036 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%) Frame = +1 Query: 6901 SRVSEFLRMNTSSFTGTNTM*NLKNIVEEFKRIFEVIHVVDYERVELV*HELKCVAITWL 7080 ++++ FLR+ +F+ T + + ++ ++ + E+V H+L+ A W Sbjct: 54 NKLANFLRVRPPTFSSTTNPVEAGDWLHIIEKKLVLLQCTNQEKVVFTSHQLQGPASEWW 113 Query: 7081 DQWKEGRANNATHPWWACFEKAFFERFFPRELNEEKVREFLTFKLDCINVHEYGLKFPKL 7260 D ++ RA W F + F + P + K REF T K V EY +F +L Sbjct: 114 DHFRMNRAKGQPITWEE-FIEGFRKTHIPAGVVTLKKREFRTLKQKDHTVTEYLHEFNRL 172 Query: 7261 SRYAP*MV-NDMERRVSF 7311 +RYA V D ER+ F Sbjct: 173 ARYALEDVRTDKERQEKF 190 >gb|AAD03367.1| (AC005957) putative retroelement pol polyprotein [Arabidopsis thaliana] Length = 1329 Score = 76.1 bits (184), Expect = 4e-011 Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 5/135 (3%) Frame = -2 Query: 51688 LDTQPIFIPPY----RMAPAELKELKEQLRDLLEKGFIRPSTSP-WGAPVLFVRKKDGSL 51524 L+ P F P ++ P + + ++ LLE G IR P W A + V+KK+G Sbjct: 424 LNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLANPVVVKKKNGKW 483 Query: 51523 QMSIEYKQLNKVTVKNRYPLPRIDDLFDQLQGAKCFSKIDLRSSYHEVRVREADIPKTAF 51344 ++ +++ LNK K+ +PLP ID L + G + S +D S Y+++ + D KT+F Sbjct: 484 RVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQILMNPEDQEKTSF 543 Query: 51343 WTRYGHYDFRVLSFGMTNAL 51284 T G Y ++V+ FG+ NA+ Sbjct: 544 ITECGTYYYKVMPFGLKNAV 563 Score = 58.2 bits (138), Expect(2) = 2e-006 Identities = 62/264 (23%), Positives = 116/264 (43%), Gaps = 19/264 (7%) Frame = -3 Query: 50145 RQVMGEEHSACYSINPGSTKMYHDLRCL-YWWDGMKKDIAEFVAQCSNCQ*VKIEHQKSG 49969 R VM E H + G + +R Y+W + D + +C CQ + + Sbjct: 987 RTVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLVADCEAYARKCEQCQ------KHAP 1040 Query: 49968 GLLQEIEI--------PTWKWEMINMDFITGLPRTQ*K*DSIWVIIDRLTKSAHFLPVRT 49813 +LQ E+ P KW M D + L + R ++A Sbjct: 1041 LILQPAELLTTVSAPYPFMKWLM---DIVGPLH-----------VSTRGVEAA------- 1079 Query: 49812 TYSAEDYVRLYV---REIVRLHGVPTSIISDRGAQFTTNFWRSFQKGLGTQVNLSTTFHP 49642 YS +V+++ ++I+ HG+P I++D G+QF + + F + +++ ST +P Sbjct: 1080 AYSNITHVQVWNFIWKDIICRHGLPYEIVTDNGSQFISEQFEVFCEEWQIRLSHSTPRYP 1139 Query: 49641 QTDGKSERTIQTLEDMLRASIIDFKGSWDDHLPLIEFAYNNHYHSSIQMAPYEALYGRKC 49462 Q +G++E +T+ L+ + +KG+W L + +A + P+ +YG + Sbjct: 1140 QGNGQAEAMNKTIISNLKKKLNAYKGAWFGELQNVLWAVRTTPRRATDETPFSLIYGMEA 1199 Query: 49461 RSPIGWFDVGETKLIGP-------DMIQQVVDKVKLIQERLLA 49354 P ++ P +MI V+D + + R LA Sbjct: 1200 VIPAEIKVPSARRIRNPQNETENNEMIIDVIDTIDERRNRALA 1242 Score = 21.9 bits (45), Expect(2) = 2e-006 Identities = 14/47 (29%), Positives = 20/47 (41%) Frame = -1 Query: 49304 FQIGDWVFLKVSPMKGVMRLDRKGKLSPRYIGPYQIVRWIGKVAYEL 49164 F++G V +V K GKL + GPY+I + Y L Sbjct: 1264 FEVGTLVLRRVQQNKAEKGA---GKLGISWEGPYKITHVVRNGVYRL 1307 Database: nr Posted date: Oct 27, 2000 11:02 AM Number of letters in database: 197,985,706 Number of sequences in database: 635,529 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: -1310781344 Number of Sequences: 635529 Number of extensions: 427855831 Number of successful extensions: 855496 Number of sequences better than 10.0: 7771 Number of HSP's better than 10.0 without gapping: 1102 Number of HSP's successfully gapped in prelim test: 6267 Number of HSP's that attempted gapping in prelim test: 845333 Number of HSP's gapped (non-prelim): 15534 length of query: 20460 length of database: 197,985,706 effective HSP length: 66 effective length of query: 20394 effective length of database: 156,040,792 effective search space: 3182295912048 effective search space used: 3182295912048 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.7 bits) S2: 87 (38.3 bits)