BLASTN 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= WEB-USER-SEQUENCE (Unknown)
         (483 letters)

Database: Tomato BAC end seqs - MboI 
           88,728 sequences; 44,789,136 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SL_MboI0050O02_SP6_153886 Unknown                                     910   0.0  
SL_MboI0019D11_T7_215962 Unknown                                      611   e-174


 Score =  910 bits (459), Expect = 0.0
 Identities = 0/483 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaaataataatataattccaacttgtatcttcttttatgttaatcgattttaaagtt 60

                                                                       
Query: 61  ttacaattattgctgacattaaattattaaatcatgagttgtgtagtgaaatggaattgg 120

                                                                       
Query: 121 ctagccactttaaacgttatccaagttatacaaattttacttttagcctcttttatgaga 180

                                                                       
Query: 181 tattgagcagtaaagtacatnnnnnnnntagcacaagataatcacttttaagttttttcc 240

                                                                       
Query: 241 agtggtacaatttactgtgaaatagaacgagctgaccacttcaagttcttgaattgatat 300

                                                                       
Query: 301 aatttacgactttagcttatttttatgaaatcttaaccatgtagtaatacagttttggat 360

                                                                       
Query: 361 acgcattttaaaactctttcaagtaataccttttacgatttaacctatttatatgaaatc 420

                                                                       
Query: 421 ctaatcaattaactaggtagtaaaataaatacgatttgactaatcgctcttttagcttgt 480

              
Query: 481 taa 483



 Score =  611 bits (308), Expect = e-174
 Identities = 0/484 (0%), Gaps = 1/484 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaaataataatataattccaacttgtatcttcttttatgttaatcg-attttaaagt 59

                                                                       
Query: 60  tttacaattattgctgacattaaattattaaatcatgagttgtgtagtgaaatggaattg 119

                                                                       
Query: 120 gctagccactttaaacgttatccaagttatacaaattttacttttagcctcttttatgag 179

                                                                       
Query: 180 atattgagcagtaaagtacatnnnnnnnntagcacaagataatcacttttaagttttttc 239

                                                                       
Query: 240 cagtggtacaatttactgtgaaatagaacgagctgaccacttcaagttcttgaattgata 299

                                                                       
Query: 300 taatttacgactttagcttatttttatgaaatcttaaccatgtagtaatacagttttgga 359

                                                                       
Query: 360 tacgcattttaaaactctttcaagtaataccttttacgatttaacctatttatatgaaat 419

                                                                       
Query: 420 cctaatcaattaactaggtagtaaaataaatacgatttgactaatcgctcttttagcttg 479

               
Query: 480 ttaa 483


  Database: Tomato BAC end seqs - MboI
    Posted date:  Jun 15, 2011 12:57 AM
  Number of letters in database: 44,789,136
  Number of sequences in database:  88,728
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 88728
Number of Hits to DB: 371,404
Number of extensions: 25210
Number of successful extensions: 25109
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 25108
Number of HSP's successfully gapped: 5
Length of query: 483
Length of database: 44,789,136
Length adjustment: 17
Effective length of query: 466
Effective length of database: 43,280,760
Effective search space: 20168834160
Effective search space used: 20168834160
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 11 (22.3 bits)
S2: 34 (67.9 bits)
