TBLASTX 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: N.benthamiana Genome v1.0.1 predicted cDNA 57,140 sequences; 82,582,885 total letters Query= Untitled_sequence Length=185 Score E Sequences producing significant alignments: (Bits) Value N Niben101Scf08020g06001.1ref|NP_181089.1| *-*- late embryogenesis ... 123 7e-29 2 Niben101Scf04717g02003.1gb|KEH24214.1| *-*- harpin-induced-like p... 115 2e-40 2 Niben101Scf08020g05010.1gb|KEH32283.1| *-*- late embryogenesis ab... 105 1e-35 2 Niben101Scf08020g05009.1gb|KEH24214.1| *-*- harpin-induced-like p... 99.6 9e-35 2 Niben101Scf05005g00001.1AT2G35980.1 *-*- Late embryogenesis abund... 59.3 4e-16 2 Niben101Scf02899g06004.1ref|NP_181089.1| *-*- late embryogenesis ... 59.3 4e-16 2 Niben101Scf06101g00013.1sp|P42695|CNDD3_HUMAN --*- Condensin-2 co... 32.7 0.15 1 Niben101Scf07616g00008.1AT1G35670.1 *-** calcium-dependent protei... 32.2 0.20 1 Niben101Scf08716g01027.1AT5G12180.1 *-** calcium-dependent protei... 31.8 0.28 1 Niben101Scf11825g00004.1sp|Q9FQ03|XRN3_ARATH *-** 5'-3' exoribonu... 30.9 0.52 1 Niben101Scf08208g02022.1gb|AAU90304.1| *-*- MuDR family transposa... 30.9 0.52 1 Niben101Scf00061g00002.1sp|Q6EU39|MADS6_ORYSJ *-** MADS-box trans... 24.0 0.62 2 Niben101Scf10620g00004.1AT1G35670.1 *-** calcium-dependent protei... 30.4 0.71 1 Niben101Scf01269g08008.1AT1G50700.1 *-** calcium-dependent protei... 30.4 0.71 1 Niben101Scf10749g02005.1AT1G50700.1 *-** calcium-dependent protei... 30.4 0.71 1 Niben101Scf13150g00002.1Unknown protein 22.1 0.72 2 Niben101Scf00152g23005.1sp|Q9FQ03|XRN3_ARATH *-*- 5'-3' exoribonu... 29.9 0.98 1 Niben101Scf11389g00006.1sp|Q9LIG2|RLK6_ARATH *-** Receptor-like p... 29.9 0.98 1 Niben101Scf05231g02020.1sp|P42695|CNDD3_HUMAN *-*- Condensin-2 co... 29.9 0.98 1 Niben101Scf02902g03009.1sp|Q39117|TGT2_ARATH *-*- Trihelix transc... 29.5 1.3 1 Niben101Scf01697g19001.1sp|Q9LS88|PP250_ARATH *-*- Pentatricopept... 29.5 1.3 1 Niben101Scf03284g05006.1sp|Q0V7S0|FB39_ARATH --*- F-box protein I... 29.5 1.3 1 Niben101Scf12522g01002.1sp|O82302|P2C29_ARATH *-*- Protein phosph... 29.5 1.3 1 Niben101Scf06888g02003.1ref|XP_002524800.1| *-** transferase, tra... 29.0 1.9 1 Niben101Scf00621g11012.1ref|XP_002524800.1| *-** transferase, tra... 29.0 1.9 1 Niben101Scf08430g00010.1sp|Q9LHP4|RCH2_ARATH *-** Receptor-like p... 29.0 1.9 1 Niben101Scf07008g01002.1sp|Q54NU2|RAB1D_DICDI *-*- Ras-related pr... 29.0 1.9 1 Niben101Scf04934g02005.1AT5G06470.1 *-*- Glutaredoxin family prot... 29.0 1.9 1 Niben101Scf02002g04018.1AT4G22360.1 *-*- SWIB complex BAF60b doma... 29.0 1.9 1 Niben101Scf02693g01008.1sp|B8CX98|MUTS_HALOH *-** DNA mismatch re... 25.4 1.9 2 Niben101Scf03250g00007.1sp|Q8W234|SEUSS_ARATH *-*- Transcriptiona... 24.4 2.1 2 Niben101Scf23113g00023.1AT5G05230.1 *-*- RING/U-box superfamily p... 28.6 2.5 1 Niben101Scf12589g00006.1AT2G38910.1 *-** calcium-dependent protei... 28.6 2.5 1 Niben101Scf03283g04012.1AT5G46800.1 *-*- Mitochondrial substrate ... 28.6 2.5 1 Niben101Scf01812g03005.1AT2G38910.1 *-** calcium-dependent protei... 28.6 2.5 1 Niben101Scf03541g00016.1sp|Q9FJJ4|FB298_ARATH --*- F-box protein ... 28.6 2.5 1 Niben101Scf02370g00006.1sp|Q9FEL7|LAX2_MEDTR *-*- Auxin transport... 28.6 2.5 1 Niben101Scf09442g05004.1ref|XP_007046503.1| *-*- Transducin/WD40 ... 28.6 2.5 1 Niben101Scf04738g05011.1AT5G04870.1 *-** calcium dependent protei... 28.6 2.5 1 Niben101Scf08137g02022.1sp|Q7XSA2|AGO1B_ORYSJ *-*- Protein argona... 28.6 2.5 1 Niben101Scf00057g00032.1AT1G76040.2 *-** calcium-dependent protei... 28.6 2.5 1 Niben101Scf00715g00004.1sp|Q9FJJ4|FB298_ARATH --*- F-box protein ... 28.6 2.5 1 Niben101Scf00887g01007.1sp|Q7XSA2|AGO1B_ORYSJ *-*- Protein argona... 28.6 2.5 1 Niben101Scf09648g03008.1AT5G49220.1 *-*- Protein of unknown funct... 28.6 2.5 1 Niben101Scf06758g00003.1ref|XP_002535501.1| --*- conserved hypoth... 28.1 3.5 1 Niben101Scf05109g02006.1AT5G35200.1 *-*- ENTH/ANTH/VHS superfamil... 28.1 3.5 1 Niben101Scf04548g00001.1sp|Q92BT1|MNTH_LISIN *-** Divalent metal ... 28.1 3.5 1 Niben101Scf06113g01011.1AT1G61760.1 *-*- Late embryogenesis abund... 28.1 3.5 1 Niben101Scf12414g01008.1emb|CDY69766.1| *-*- BnaCnng65240D [Brass... 28.1 3.5 1 Niben101Scf01784g03001.1AT1G45249.3 *-** abscisic acid responsive... 28.1 3.5 1 Niben101Scf00508g00005.1AT1G50700.1 *-** calcium-dependent protei... 27.6 4.8 1 Niben101Scf06898g01002.1AT4G08850.1 *-*- Leucine-rich repeat rece... 23.1 5.8 2 Niben101Scf05203g03015.1sp|A2Z730|ILI7_ORYSI *-*- Transcription f... 27.2 6.6 1 Niben101Scf02622g12049.1AT5G24710.1 *-*- Transducin/WD40 repeat-l... 27.2 6.6 1 Niben101Scf11186g00001.1sp|Q9M817|PTR6_ARATH *-*- Protein NRT1/ P... 27.2 6.6 1 Niben101Scf03150g07003.1AT3G46340.1 *-*- Leucine-rich repeat prot... 27.2 6.6 1 Niben101Scf00447g00004.1Unknown protein 27.2 6.6 1 Niben101Scf02830g02034.1emb|CDY32792.1| *-*- BnaA10g10570D [Brass... 27.2 6.6 1 Niben101Scf01001g02006.1sp|Q9C9J0|LHTL5_ARATH *-*- Lysine histidi... 27.2 6.6 1 Niben101Scf02563g06015.1AT4G36600.1 *-*- Late embryogenesis abund... 27.2 6.6 1 Niben101Scf03169g05001.1sp|Q9NGQ2|KIF1_DICDI *-** Kinesin-related... 27.2 6.6 1 Niben101Scf09099g00023.1sp|Q75AA5|NTF2_ASHGO --** Nuclear transpo... 27.2 6.6 1 Niben101Scf39514g00007.1gb|ADY76580.1| *-*- translocon at inner m... 27.2 6.6 1 Niben101Scf06267g00004.1sp|Q56XU4|C3H6_ARATH *-*- Zinc finger CCC... 27.2 6.6 1 Niben101Scf02174g01001.1sp|P47735|RLK5_ARATH *-** Receptor-like p... 27.2 6.6 1 Niben101Scf03766g16006.1sp|A8AAC1|FEN_IGNH4 *-** Flap endonucleas... 23.5 7.4 2 Niben101Scf06144g00013.1AT4G26540.1 *-*- Leucine-rich repeat rece... 23.1 7.4 2 Niben101Scf02363g00015.1sp|P48980|BGAL_SOLLC *-*- Beta-galactosid... 26.7 9.1 1 Niben101Scf11254g00007.1ref|WP_023620087.1| *-*- membrane protein... 26.7 9.1 1 Niben101Scf00837g06003.1sp|Q84WL9|AP2S_ARATH *-** AP-2 complex su... 26.7 9.1 1 Niben101Scf01005g05015.1sp|Q9FL33|MCM3_ARATH *-** DNA replication... 26.7 9.1 1 Niben101Scf03371g01018.1emb|CDY15385.1| *-*- BnaC04g42380D [Brass... 26.7 9.1 1 Niben101Scf00508g01019.1AT5G10460.1 *-*- Haloacid dehalogenase-li... 26.7 9.1 1 Niben101Scf01795g08010.1sp|Q9LIG2|RLK6_ARATH *-** Receptor-like p... 26.7 9.1 1 Niben101Scf02982g03019.1AT3G23820.1 *-** UDP-D-glucuronate 4-epim... 26.7 9.1 1 Niben101Scf33803g00005.1sp|P0AAG7|MDLB_ECO57 *-** Multidrug resis... 26.7 9.1 1 Niben101Scf00390g05027.1Unknown protein 26.7 9.1 1 Niben101Scf05286g00002.1sp|P10538|AMYB_SOYBN *-** Beta-amylase IP... 26.7 9.1 1 Niben101Scf00057g00034.1AT5G10460.1 *-*- Haloacid dehalogenase-li... 26.7 9.1 1 Niben101Scf03371g01005.1sp|Q07977|SIA8B_RAT *-** Alpha-2,8-sialyl... 26.7 9.1 1 Niben101Scf05319g05007.1AT3G06130.1 *-** Heavy metal transport/de... 26.7 9.1 1 Niben101Scf06876g00002.1sp|Q9JI10|STK3_MOUSE *-** Serine/threonin... 26.7 9.1 1 Niben101Scf14814g00022.1sp|Q5JIZ5|TKSP_THEKO *-** Subtilisin-like... 26.7 9.1 1 Niben101Scf10213g00009.1Unknown protein 26.7 9.1 1 Niben101Scf00684g00002.1sp|P51153|RAB13_HUMAN *-*- Ras-related pr... 26.7 9.1 1 Niben101Scf11383g02020.1sp|O61125|STK4_DICDI *-** Serine/threonin... 26.7 9.1 1 >Niben101Scf08020g06001.1 ref|NP_181089.1| *-*- late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gb|AAC36175.1| similar to harpin-induced protein hin1 from tobacco [Arabidopsis thaliana] gb|AEC09110.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] IPR004864 (Late embryogenesis abundant protein, LEA-14) Length=690 Score = 115 bits (245), Expect(2) = 2e-43 Identities = 40/40 (100%), Positives = 40/40 (100%), Gaps = 0/40 (0%) Frame = +3/+1 Query 3 NLNGAYYGPSIPPPAKSYHRHGRGSSCNPCSCLFGCLCNC 122 NLNGAYYGPSIPPPAKSYHRHGRGSSCNPCSCLFGCLCNC Sbjct 13 NLNGAYYGPSIPPPAKSYHRHGRGSSCNPCSCLFGCLCNC 132 Score = 74.8 bits (157), Expect(2) = 2e-43 Identities = 27/27 (100%), Positives = 27/27 (100%), Gaps = 0/27 (0%) Frame = +2/+3 Query 104 WMPLQLFFQNYLHPSNHPRSHCISSMA 184 WMPLQLFFQNYLHPSNHPRSHCISSMA Sbjct 114 WMPLQLFFQNYLHPSNHPRSHCISSMA 194 Score = 123 bits (263), Expect = 7e-29 Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%) Frame = -1/-1 Query 185 EP*N*CNDSEDD*KGEDNFEKTIAEASKETTTWvaaaaaavaVIGFCWWRNGRAIIGSVQ 6 EP*N*CNDSEDD*KGEDNFEKTIAEASKETTTWVAAAAAAVAVIGFCWWRNGRAIIGSVQ Sbjct 195 EP*N*CNDSEDD*KGEDNFEKTIAEASKETTTWVAAAAAAVAVIGFCWWRNGRAIIGSVQ 16 Query 5 V 3 V Sbjct 15 V 13 Score = 111 bits (237), Expect = 3e-25 Identities = 46/46 (100%), Positives = 46/46 (100%), Gaps = 0/46 (0%) Frame = -2/-2 Query 184 SHRTNAMTPRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPWR**DF 47 SHRTNAMTPRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPWR**DF Sbjct 194 SHRTNAMTPRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPWR**DF 57 Score = 108 bits (230), Expect = 3e-24 Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%) Frame = -3/-3 Query 183 AIELMQ*LRG*LEG*R*F*KNNCRGIQRDNYMgcsccrgrggdRILLVAEWKGHNRLRSS 4 AIELMQ*LRG*LEG*R*F*KNNCRGIQRDNYMGCSCCRGRGGDRILLVAEWKGHNRLRSS Sbjct 193 AIELMQ*LRG*LEG*R*F*KNNCRGIQRDNYMGCSCCRGRGGDRILLVAEWKGHNRLRSS 14 Query 3 W 1 W Sbjct 13 W 11 Score = 71.6 bits (150), Expect = 3e-13 Identities = 42/42 (100%), Positives = 42/42 (100%), Gaps = 0/42 (0%) Frame = +1/+2 Query 1 PT*TEPIMALPFRHQQNPItataaaaaatHVVVSLDASAIVF 126 PT*TEPIMALPFRHQQNPITATAAAAAATHVVVSLDASAIVF Sbjct 11 PT*TEPIMALPFRHQQNPITATAAAAAATHVVVSLDASAIVF 136 Score = 43.7 bits (89), Expect = 7e-05 Identities = 17/17 (100%), Positives = 17/17 (100%), Gaps = 0/17 (0%) Frame = +2/+3 Query 2 QLERSLLWPFHSATSKI 52 QLERSLLWPFHSATSKI Sbjct 12 QLERSLLWPFHSATSKI 62 >Niben101Scf04717g02003.1 gb|KEH24214.1| *-*- harpin-induced-like protein [Medicago truncatula] IPR004864 (Late embryogenesis abundant protein, LEA-14) Length=690 Score = 115 bits (245), Expect(2) = 2e-40 Identities = 40/40 (100%), Positives = 40/40 (100%), Gaps = 0/40 (0%) Frame = +3/+1 Query 3 NLNGAYYGPSIPPPAKSYHRHGRGSSCNPCSCLFGCLCNC 122 NLNGAYYGPSIPPPAKSYHRHGRGSSCNPCSCLFGCLCNC Sbjct 13 NLNGAYYGPSIPPPAKSYHRHGRGSSCNPCSCLFGCLCNC 132 Score = 64.3 bits (134), Expect(2) = 2e-40 Identities = 23/26 (88%), Positives = 26/26 (100%), Gaps = 0/26 (0%) Frame = +2/+3 Query 107 MPLQLFFQNYLHPSNHPRSHCISSMA 184 +PLQLFFQNYLHPS+HPRSHCISS+A Sbjct 117 LPLQLFFQNYLHPSDHPRSHCISSVA 194 Score = 107 bits (229), Expect = 3e-24 Identities = 54/61 (89%), Positives = 57/61 (93%), Gaps = 0/61 (0%) Frame = -1/-1 Query 185 EP*N*CNDSEDD*KGEDNFEKTIAEASKETTTWvaaaaaavaVIGFCWWRNGRAIIGSVQ 6 EP N*CNDSEDD KGEDNFEKTIA+A++ET TWVAAAAAAVAVIGFCWWR GRAIIGSVQ Sbjct 195 EPQN*CNDSEDDQKGEDNFEKTIAKAAEETATWVAAAAAAVAVIGFCWWRYGRAIIGSVQ 16 Query 5 V 3 V Sbjct 15 V 13 Score = 107 bits (229), Expect = 3e-24 Identities = 45/46 (98%), Positives = 45/46 (98%), Gaps = 0/46 (0%) Frame = -2/-2 Query 184 SHRTNAMTPRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPWR**DF 47 SHRTNAMTPRMIRRVKIILKKQLQR PKRQLHGLQLLPRPWR**DF Sbjct 194 SHRTNAMTPRMIRRVKIILKKQLQRQPKRQLHGLQLLPRPWR**DF 57 Score = 91.8 bits (194), Expect = 2e-19 Identities = 54/61 (89%), Positives = 57/61 (93%), Gaps = 0/61 (0%) Frame = -3/-3 Query 183 AIELMQ*LRG*LEG*R*F*KNNCRGIQRDNYMgcsccrgrggdRILLVAEWKGHNRLRSS 4 A ELMQ*LRG* EG*R*F*KNNC+G +RD+YMGCSCCRGRGGDRILLVA WKGHNRLRSS Sbjct 193 ATELMQ*LRG*SEG*R*F*KNNCKGSRRDSYMGCSCCRGRGGDRILLVAVWKGHNRLRSS 14 Query 3 W 1 W Sbjct 13 W 11 Score = 59.3 bits (123), Expect = 1e-09 Identities = 37/42 (88%), Positives = 38/42 (90%), Gaps = 0/42 (0%) Frame = +1/+2 Query 1 PT*TEPIMALPFRHQQNPItataaaaaatHVVVSLDASAIVF 126 PT*TEPIMALP+RHQQNPITATAAAAAATHV VS A AIVF Sbjct 11 PT*TEPIMALPYRHQQNPITATAAAAAATHVAVSSAAFAIVF 136 Score = 42.3 bits (86), Expect = 2e-04 Identities = 16/17 (94%), Positives = 17/17 (100%), Gaps = 0/17 (0%) Frame = +2/+3 Query 2 QLERSLLWPFHSATSKI 52 QLERSLLWPFH+ATSKI Sbjct 12 QLERSLLWPFHTATSKI 62 >Niben101Scf08020g05010.1 gb|KEH32283.1| *-*- late embryogenesis abundant protein [Medicago truncatula] IPR004864 (Late embryogenesis abundant protein, LEA-14) Length=537 Score = 105 bits (225), Expect(2) = 1e-35 Identities = 36/40 (90%), Positives = 39/40 (98%), Gaps = 0/40 (0%) Frame = +3/+1 Query 3 NLNGAYYGPSIPPPAKSYHRHGRGSSCNPCSCLFGCLCNC 122 +LNGAYYGPSIPP +K+YHRHGRGSSCNPCSCLFGCLCNC Sbjct 13 HLNGAYYGPSIPPRSKTYHRHGRGSSCNPCSCLFGCLCNC 132 Score = 57.4 bits (119), Expect(2) = 1e-35 Identities = 20/26 (77%), Positives = 24/26 (92%), Gaps = 0/26 (0%) Frame = +2/+3 Query 107 MPLQLFFQNYLHPSNHPRSHCISSMA 184 +PLQLFFQNYLHPSN+P HCIS++A Sbjct 117 LPLQLFFQNYLHPSNYPWGHCISTLA 194 Score = 90.4 bits (191), Expect = 6e-19 Identities = 46/61 (75%), Positives = 54/61 (89%), Gaps = 0/61 (0%) Frame = -1/-1 Query 185 EP*N*CNDSEDD*KGEDNFEKTIAEASKETTTWvaaaaaavaVIGFCWWRNGRAIIGSVQ 6 EP *CND +D+*KGEDNFEKTIAEA++ETTTWVAAAA A++V+GF WRNG +IIGSVQ Sbjct 195 EPEY*CNDPKDN*KGEDNFEKTIAEAAEETTTWVAAAATAMSVVGFRPWRNGGSIIGSVQ 16 Query 5 V 3 V Sbjct 15 V 13 Score = 87.2 bits (184), Expect = 6e-18 Identities = 37/42 (88%), Positives = 38/42 (90%), Gaps = 0/42 (0%) Frame = -2/-2 Query 184 SHRTNAMTPRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPWR 59 S TNAMTPR+IRRVKIILKKQLQR PKRQLHGLQLLPRP R Sbjct 194 SQSTNAMTPRIIRRVKIILKKQLQRQPKRQLHGLQLLPRPCR 69 Score = 75.3 bits (158), Expect = 2e-14 Identities = 44/57 (77%), Positives = 47/57 (82%), Gaps = 0/57 (0%) Frame = -3/-3 Query 174 LMQ*LRG*LEG*R*F*KNNCRGIQRDNYMgcsccrgrggdRILLVAEWKGHNRLRSS 4 LMQ* +G*LEG*R*F*KNNCRG +RDNYMGCSCC G G R VAEW+ HNRLRSS Sbjct 184 LMQ*PQG*LEG*R*F*KNNCRGSRRDNYMGCSCCHGHVGGRFSTVAEWRVHNRLRSS 14 Score = 49.2 bits (101), Expect = 2e-06 Identities = 31/42 (74%), Positives = 32/42 (76%), Gaps = 0/42 (0%) Frame = +1/+2 Query 1 PT*TEPIMALPFRHQQNPItataaaaaatHVVVSLDASAIVF 126 PT*TEPIM PFRH + P T A AAAATHVVVS ASAIVF Sbjct 11 PT*TEPIMDPPFRHGRKPTTDMAVAAAATHVVVSSAASAIVF 136 Score = 29.0 bits (57), Expect = 1.9 Identities = 11/13 (85%), Positives = 11/13 (85%), Gaps = 0/13 (0%) Frame = +2/+3 Query 5 LERSLLWPFHSAT 43 LERSLLW HSAT Sbjct 15 LERSLLWTLHSAT 53 >Niben101Scf08020g05009.1 gb|KEH24214.1| *-*- harpin-induced-like protein [Medicago truncatula] IPR004864 (Late embryogenesis abundant protein, LEA-14) Length=690 Score = 99.6 bits (211), Expect(2) = 9e-35 Identities = 34/40 (85%), Positives = 37/40 (93%), Gaps = 0/40 (0%) Frame = +3/+1 Query 3 NLNGAYYGPSIPPPAKSYHRHGRGSSCNPCSCLFGCLCNC 122 +LNGAYYGPSIP +K+YHRHGRGSSCNPCSCL GCLCNC Sbjct 13 HLNGAYYGPSIPSRSKTYHRHGRGSSCNPCSCLLGCLCNC 132 Score = 61.1 bits (127), Expect(2) = 9e-35 Identities = 21/26 (81%), Positives = 25/26 (96%), Gaps = 0/26 (0%) Frame = +2/+3 Query 107 MPLQLFFQNYLHPSNHPRSHCISSMA 184 +PLQLFFQNYLHPSN+PR HCIS++A Sbjct 117 LPLQLFFQNYLHPSNYPRGHCISTLA 194 Score = 85.8 bits (181), Expect = 1e-17 Identities = 36/42 (86%), Positives = 38/42 (90%), Gaps = 0/42 (0%) Frame = -2/-2 Query 184 SHRTNAMTPRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPWR 59 S TNAMTPR+IRRVKIILKKQLQR P+RQLHGLQLLPRP R Sbjct 194 SQSTNAMTPRIIRRVKIILKKQLQRQPRRQLHGLQLLPRPCR 69 Score = 81.7 bits (172), Expect = 3e-16 Identities = 45/61 (74%), Positives = 52/61 (85%), Gaps = 0/61 (0%) Frame = -1/-1 Query 185 EP*N*CNDSEDD*KGEDNFEKTIAEASKETTTWvaaaaaavaVIGFCWWRNGRAIIGSVQ 6 EP *CND ED+*KGEDNFEKTIAEA++ETTTWVAAAA A++V+GF NG +IIGSVQ Sbjct 195 EPEY*CNDPEDN*KGEDNFEKTIAEAAEETTTWVAAAATAMSVVGFRP*WNGGSIIGSVQ 16 Query 5 V 3 V Sbjct 15 V 13 Score = 71.6 bits (150), Expect = 3e-13 Identities = 43/57 (75%), Positives = 45/57 (79%), Gaps = 0/57 (0%) Frame = -3/-3 Query 174 LMQ*LRG*LEG*R*F*KNNCRGIQRDNYMgcsccrgrggdRILLVAEWKGHNRLRSS 4 LMQ* RG*LEG*R*F*KNNCRG + DNYMGCSCC G G R V EW+ HNRLRSS Sbjct 184 LMQ*PRG*LEG*R*F*KNNCRGSRGDNYMGCSCCHGHVGGRFSTVMEWRVHNRLRSS 14 Score = 46.9 bits (96), Expect = 8e-06 Identities = 30/42 (71%), Positives = 31/42 (74%), Gaps = 0/42 (0%) Frame = +1/+2 Query 1 PT*TEPIMALPFRHQQNPItataaaaaatHVVVSLDASAIVF 126 PT*TEPIM PF H + P T A AAAATHVVVS ASAIVF Sbjct 11 PT*TEPIMDPPFHHGRKPTTDMAVAAAATHVVVSSAASAIVF 136 Score = 26.7 bits (52), Expect = 9.1 Identities = 10/13 (77%), Positives = 10/13 (77%), Gaps = 0/13 (0%) Frame = +2/+3 Query 5 LERSLLWPFHSAT 43 LERSLLW HS T Sbjct 15 LERSLLWTLHSIT 53 >Niben101Scf05005g00001.1 AT2G35980.1 *-*- Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=227 IPR004864 (Late embryogenesis abundant protein, LEA-14) Length=711 Score = 59.3 bits (123), Expect(2) = 4e-16 Identities = 20/27 (74%), Positives = 23/27 (85%), Gaps = 0/27 (0%) Frame = +3/+1 Query 3 NLNGAYYGPSIPPPAKSYHRHGRGSSC 83 +LNGAYYGPSIPPP+K+YHR G G C Sbjct 13 HLNGAYYGPSIPPPSKTYHRPGHGGGC 93 Score = 38.6 bits (78), Expect(2) = 4e-16 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 0/20 (0%) Frame = +3/+1 Query 63 HGRGSSCNPCSCLFGCLCNC 122 HG G CNP SC GCL NC Sbjct 79 HGGGCCCNPFSCCCGCLFNC 138 Score = 36.3 bits (73), Expect = 0.012 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 0/38 (0%) Frame = -2/-2 Query 175 TNAMTPRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPW 62 T MT + K+ ++ QL+R P++QL+GLQ P PW Sbjct 191 TPTMTKSVQSIWKMQVQMQLKRQPQQQLNGLQQHPPPW 78 Score = 29.0 bits (57), Expect = 1.9 Identities = 7/11 (64%), Positives = 8/11 (73%), Gaps = 0/11 (0%) Frame = +3/+1 Query 90 CSCLFGCLCNC 122 C CLF C+C C Sbjct 118 CGCLFNCICTC 150 >Niben101Scf02899g06004.1 ref|NP_181089.1| *-*- late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gb|AAC36175.1| similar to harpin-induced protein hin1 from tobacco [Arabidopsis thaliana] gb|AEC09110.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] IPR004864 (Late embryogenesis abundant protein, LEA-14) Length=711 Score = 59.3 bits (123), Expect(2) = 4e-16 Identities = 20/27 (74%), Positives = 23/27 (85%), Gaps = 0/27 (0%) Frame = +3/+1 Query 3 NLNGAYYGPSIPPPAKSYHRHGRGSSC 83 +LNGAYYGPSIPPP+K+YHR G G C Sbjct 13 HLNGAYYGPSIPPPSKTYHRPGHGGGC 93 Score = 38.6 bits (78), Expect(2) = 4e-16 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 0/20 (0%) Frame = +3/+1 Query 63 HGRGSSCNPCSCLFGCLCNC 122 HG G CNP SC GCL NC Sbjct 79 HGGGCCCNPFSCCCGCLFNC 138 Score = 39.1 bits (79), Expect(2) = 5e-06 Identities = 17/38 (45%), Positives = 25/38 (66%), Gaps = 0/38 (0%) Frame = -2/-2 Query 175 TNAMTPRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPW 62 T MT R+ K+ ++ QL+R P++QL+GLQ P PW Sbjct 191 TPTMTKRVQSIWKMQVQMQLKRQPQQQLNGLQQHPPPW 78 Score = 24.4 bits (47), Expect(2) = 5e-06 Identities = 10/14 (71%), Positives = 10/14 (71%), Gaps = 0/14 (0%) Frame = -3/-3 Query 48 LLVAEWKGHNRLRS 7 L AE GHNRLRS Sbjct 58 LTAAELMGHNRLRS 17 Score = 29.0 bits (57), Expect(2) = 2e-04 Identities = 12/18 (67%), Positives = 13/18 (72%), Gaps = 0/18 (0%) Frame = +1/+2 Query 1 PT*TEPIMALPFRHQQNP 54 P *TEPIMA FR +Q P Sbjct 11 PI*TEPIMAHQFRRRQKP 64 Score = 29.0 bits (57), Expect(2) = 2e-04 Identities = 7/11 (64%), Positives = 8/11 (73%), Gaps = 0/11 (0%) Frame = +3/+1 Query 90 CSCLFGCLCNC 122 C CLF C+C C Sbjct 118 CGCLFNCICTC 150 Score = 26.7 bits (52), Expect = 9.1 Identities = 10/14 (71%), Positives = 11/14 (79%), Gaps = 0/14 (0%) Frame = +2/+3 Query 8 ERSLLWPFHSATSK 49 ERSLLWP +SA K Sbjct 18 ERSLLWPINSAAVK 59 >Niben101Scf06101g00013.1 sp|P42695|CNDD3_HUMAN --*- Condensin-2 complex subunit D3 IPR026971 (Condensin subunit 1/Condensin-2 complex subunit D3) GO:0007076 (mitotic chromosome condensation) Length=4730 Score = 32.7 bits (65), Expect = 0.15 Identities = 11/19 (58%), Positives = 13/19 (68%), Gaps = 0/19 (0%) Frame = +3/-3 Query 57 HRHGRGSSCNPCSCLFGCL 113 H H +SC+PC LFGCL Sbjct 990 HFHNGFNSCSPCLSLFGCL 934 Score = 29.0 bits (57), Expect = 1.9 Identities = 11/19 (58%), Positives = 13/19 (68%), Gaps = 0/19 (0%) Frame = -2/+2 Query 115 QRHPKRQLHGLQLLPRPWR 59 +RHPKR GLQLL W+ Sbjct 932 KRHPKRLRQGLQLLKPLWK 988 >Niben101Scf07616g00008.1 AT1G35670.1 *-** calcium-dependent protein kinase 2 LENGTH=495 IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair) GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=2070 Score = 32.2 bits (64), Expect = 0.20 Identities = 13/33 (39%), Positives = 21/33 (64%), Gaps = 0/33 (0%) Frame = -2/+2 Query 160 PRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPW 62 P + VK +++K L R+PKR+L ++L PW Sbjct 929 PGISDSVKDLIRKILDRNPKRRLTAHEVLCHPW 1027 >Niben101Scf08716g01027.1 AT5G12180.1 *-** calcium-dependent protein kinase 17 LENGTH=528 IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair) GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=1968 Score = 31.8 bits (63), Expect = 0.28 Identities = 13/33 (39%), Positives = 19/33 (58%), Gaps = 0/33 (0%) Frame = -2/+3 Query 160 PRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPW 62 P + K I+KK L PK++L +Q+L PW Sbjct 1020 PTISHGAKDIVKKMLTIDPKQRLTAIQVLNHPW 1118 >Niben101Scf11825g00004.1 sp|Q9FQ03|XRN3_ARATH *-** 5'-3' exoribonuclease 3 IPR027073 (5'-3' exoribonuclease) GO:0003676 (nucleic acid binding), GO:0004527 (exonuclease activity), GO:0004534 (5'-3' exoribonuclease activity), GO:0005634 (nucleus), GO:0006139 (nucleobase-containing compound metabolic process), GO:0008270 (zinc ion binding) Length=3999 Score = 30.9 bits (61), Expect = 0.52 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 0/23 (0%) Frame = +3/+1 Query 39 PPAKSYHRHGRGSSCNPCSCLFG 107 PP++ YHRHG S+ P + +G Sbjct 3130 PPSRDYHRHGHHSAVVPQNVRYG 3198 >Niben101Scf08208g02022.1 gb|AAU90304.1| *-*- MuDR family transposase containing protein [Solanum demissum] Length=279 Score = 30.9 bits (61), Expect = 0.52 Identities = 9/13 (69%), Positives = 10/13 (77%), Gaps = 0/13 (0%) Frame = +3/-3 Query 81 CNPCSCLFGCLCN 119 CNPC CLF +CN Sbjct 232 CNPCRCLFS*VCN 194 >Niben101Scf00061g00002.1 sp|Q6EU39|MADS6_ORYSJ *-** MADS-box transcription factor 6 IPR002100 (Transcription factor, MADS-box), IPR002487 (Transcription factor, K-box) GO:0003677 (DNA binding), GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0005634 (nucleus), GO:0006355 (regulation of transcription, DNA-templated), GO:0046983 (protein dimerization activity) Length=1347 Score = 24.0 bits (46), Expect(2) = 0.62 Identities = 8/15 (53%), Positives = 12/15 (80%), Gaps = 0/15 (0%) Frame = +2/-1 Query 107 MPLQLFFQNYLHPSN 151 +PLQ+ FQ++ PSN Sbjct 765 VPLQVVFQDFATPSN 721 Score = 22.6 bits (43), Expect(2) = 0.62 Identities = 7/17 (41%), Positives = 10/17 (59%), Gaps = 0/17 (0%) Frame = +3/-3 Query 42 PAKSYHRHGRGSSCNPC 92 PA + HG G + +PC Sbjct 958 PADALQVHGNGRALSPC 908 >Niben101Scf10620g00004.1 AT1G35670.1 *-** calcium-dependent protein kinase 2 LENGTH=495 IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair) GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=1899 Score = 30.4 bits (60), Expect = 0.71 Identities = 12/33 (36%), Positives = 20/33 (61%), Gaps = 0/33 (0%) Frame = -2/+2 Query 160 PRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPW 62 P + K +++K L R+PKR+L ++L PW Sbjct 932 PGISDSAKDLIRKILDRNPKRRLTAHEVLCHPW 1030 >Niben101Scf01269g08008.1 AT1G50700.1 *-** calcium-dependent protein kinase 33 LENGTH=521 IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair) GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=2681 Score = 30.4 bits (60), Expect = 0.71 Identities = 10/33 (30%), Positives = 19/33 (58%), Gaps = 0/33 (0%) Frame = -2/+1 Query 160 PRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPW 62 P + K +++K L + PK+++ Q+L PW Sbjct 1138 PSVSSSAKDLVRKMLTKDPKKRITAAQVLEHPW 1236 >Niben101Scf10749g02005.1 AT1G50700.1 *-** calcium-dependent protein kinase 33 LENGTH=521 IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair) GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=2414 Score = 30.4 bits (60), Expect = 0.71 Identities = 10/33 (30%), Positives = 19/33 (58%), Gaps = 0/33 (0%) Frame = -2/+3 Query 160 PRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPW 62 P + K +++K L + PK+++ Q+L PW Sbjct 1164 PSVSSSAKDLVRKMLTKDPKKRITAAQVLEHPW 1262 >Niben101Scf13150g00002.1 Unknown protein Length=240 Score = 22.1 bits (42), Expect(2) = 0.72 Identities = 6/9 (67%), Positives = 7/9 (78%), Gaps = 0/9 (0%) Frame = +3/-1 Query 90 CSCLFGCLC 116 C CL+GC C Sbjct 114 CWCLWGCKC 88 Score = 21.7 bits (41), Expect(2) = 0.72 Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 0/18 (0%) Frame = +3/-3 Query 42 PAKSYHRHGRGSSCNPCS 95 P K HRHG+G S Sbjct 184 PKK*SHRHGQGEGAETLS 131 >Niben101Scf00152g23005.1 sp|Q9FQ03|XRN3_ARATH *-*- 5'-3' exoribonuclease 3 Length=808 Score = 29.9 bits (59), Expect = 0.98 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 0/23 (0%) Frame = +3/+2 Query 39 PPAKSYHRHGRGSSCNPCSCLFG 107 PP++ YHRHG S+ P + +G Sbjct 467 PPSRDYHRHGHHSAVVPQNVGYG 535 >Niben101Scf11389g00006.1 sp|Q9LIG2|RLK6_ARATH *-** Receptor-like protein kinase IPR011009 (Protein kinase-like domain) GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=1957 Score = 29.9 bits (59), Expect = 0.98 Identities = 10/27 (37%), Positives = 14/27 (52%), Gaps = 0/27 (0%) Frame = +3/+2 Query 42 PAKSYHRHGRGSSCNPCSCLFGCLCNC 122 P ++YH+ RG +FGC C C Sbjct 1454 PLQAYHKSPRGR*LQENKLVFGCHCKC 1534 >Niben101Scf05231g02020.1 sp|P42695|CNDD3_HUMAN *-*- Condensin-2 complex subunit D3 IPR016024 (Armadillo-type fold), IPR026971 (Condensin subunit 1/Condensin-2 complex subunit D3) GO:0005488 (binding), GO:0007076 (mitotic chromosome condensation) Length=4223 Score = 29.9 bits (59), Expect = 0.98 Identities = 10/19 (53%), Positives = 13/19 (68%), Gaps = 0/19 (0%) Frame = +3/-3 Query 57 HRHGRGSSCNPCSCLFGCL 113 H + +SC+PC LFGCL Sbjct 1035 HFYNGFNSCSPCLSLFGCL 979 >Niben101Scf02902g03009.1 sp|Q39117|TGT2_ARATH *-*- Trihelix transcription factor GT-2 IPR009057 (Homeodomain-like) GO:0003677 (DNA binding), GO:0003682 (chromatin binding) Length=4218 Score = 29.5 bits (58), Expect = 1.3 Identities = 11/24 (46%), Positives = 16/24 (67%), Gaps = 0/24 (0%) Frame = -2/-3 Query 133 ILKKQLQRHPKRQLHGLQLLPRPW 62 ILK L+ +P+ + H L L+PR W Sbjct 1873 ILKSLLEYNPRPRYHFLVLIPRSW 1802 >Niben101Scf01697g19001.1 sp|Q9LS88|PP250_ARATH *-*- Pentatricopeptide repeat-containing protein IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain) GO:0005515 (protein binding) Length=2154 Score = 29.5 bits (58), Expect = 1.3 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 0/25 (0%) Frame = +2/+2 Query 107 MPLQLFFQNYLHPSNHPRSHCISSM 181 MPL L +++YL PSN + +SS+ Sbjct 2024 MPLLLMWRSYLLPSNRVKKRLVSSL 2098 >Niben101Scf03284g05006.1 sp|Q0V7S0|FB39_ARATH --*- F-box protein IPR001810 (F-box domain) GO:0005515 (protein binding) Length=735 Score = 29.5 bits (58), Expect = 1.3 Identities = 9/21 (43%), Positives = 14/21 (67%), Gaps = 0/21 (0%) Frame = +3/+3 Query 3 NLNGAYYGPSIPPPAKSYHRH 65 +L ++ PS+PPP +HRH Sbjct 165 HLRSSFPPPSLPPPRLHFHRH 227 >Niben101Scf12522g01002.1 sp|O82302|P2C29_ARATH *-*- Protein phosphatase 2C 29 IPR001932 (Protein phosphatase 2C (PP2C)-like domain), IPR015655 (Protein phosphatase 2C) GO:0003824 (catalytic activity) Length=5656 Score = 29.5 bits (58), Expect = 1.3 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 0/25 (0%) Frame = +2/-1 Query 107 MPLQLFFQNYLHPSNHPRSHCISSM 181 MPL L +++YL PSN + +SS+ Sbjct 3460 MPLLLMWRSYLLPSNRVKKRLVSSL 3386 >Niben101Scf06888g02003.1 ref|XP_002524800.1| *-** transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF37643.1| transferase, transferring glycosyl groups, putative [Ricinus communis] IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases) GO:0016757 (transferase activity, transferring glycosyl groups) Length=1101 Score = 29.0 bits (57), Expect = 1.9 Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 0/13 (0%) Frame = +3/+3 Query 27 PSIPPPAKSYHRH 65 PS PPP SYH H Sbjct 66 PSFPPPLTSYHHH 104 >Niben101Scf00621g11012.1 ref|XP_002524800.1| *-** transferase, transferring glycosyl groups, putative [Ricinus communis] gb|EEF37643.1| transferase, transferring glycosyl groups, putative [Ricinus communis] IPR002495 (Glycosyl transferase, family 8), IPR029044 (Nucleotide-diphospho-sugar transferases) GO:0016757 (transferase activity, transferring glycosyl groups) Length=1098 Score = 29.0 bits (57), Expect = 1.9 Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 0/13 (0%) Frame = +3/+3 Query 27 PSIPPPAKSYHRH 65 PS PPP SYH H Sbjct 66 PSFPPPLASYHHH 104 >Niben101Scf08430g00010.1 sp|Q9LHP4|RCH2_ARATH *-** Receptor-like protein kinase 2 IPR011009 (Protein kinase-like domain), IPR011990 (Tetratricopeptide-like helical domain) GO:0004672 (protein kinase activity), GO:0005515 (protein binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=2925 Score = 29.0 bits (57), Expect = 1.9 Identities = 10/27 (37%), Positives = 15/27 (56%), Gaps = 0/27 (0%) Frame = +3/+3 Query 27 PSIPPPAKSYHRHGRGSSCNPCSCLFG 107 P +P +S + G SCN C+ L+G Sbjct 2724 PLVPKDTRSVGKDGEKLSCNLCTVLYG 2804 >Niben101Scf07008g01002.1 sp|Q54NU2|RAB1D_DICDI *-*- Ras-related protein Rab-1D IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase) GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane) Length=893 Score = 29.0 bits (57), Expect = 1.9 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 0/20 (0%) Frame = -2/-1 Query 118 LQRHPKRQLHGLQLLPRPWR 59 L++HP + H L LL R WR Sbjct 80 LKKHPPSRSHNLSLLQRGWR 21 >Niben101Scf04934g02005.1 AT5G06470.1 *-*- Glutaredoxin family protein LENGTH=239 IPR012336 (Thioredoxin-like fold) GO:0009055 (electron carrier activity), GO:0015035 (protein disulfide oxidoreductase activity), GO:0045454 (cell redox homeostasis) Length=903 Score = 29.0 bits (57), Expect = 1.9 Identities = 10/29 (34%), Positives = 13/29 (45%), Gaps = 0/29 (0%) Frame = +3/-2 Query 36 PPPAKSYHRHGRGSSCNPCSCLFGCLCNC 122 P P + H +GS PC F C+C Sbjct 797 PNPTRPLHGEVKGSKGIPCKSFFNIPCSC 711 >Niben101Scf02002g04018.1 AT4G22360.1 *-*- SWIB complex BAF60b domain-containing protein LENGTH=385 IPR003121 (SWIB/MDM2 domain), IPR009057 (Homeodomain-like), IPR014876 (DEK, C-terminal) GO:0003677 (DNA binding), GO:0005515 (protein binding) Length=2808 Score = 29.0 bits (57), Expect = 1.9 Identities = 11/27 (41%), Positives = 12/27 (44%), Gaps = 0/27 (0%) Frame = +3/-1 Query 42 PAKSYHRHGRGSSCNPCSCLFGCLCNC 122 PA G G+ C C C GC C C Sbjct 573 PAAVLATIGDGACCCTCGCRDGCRCCC 493 >Niben101Scf02693g01008.1 sp|B8CX98|MUTS_HALOH *-** DNA mismatch repair protein MutS IPR002999 (Tudor domain), IPR007695 (DNA mismatch repair protein MutS-like, N-terminal), IPR015536 (DNA mismatch repair protein MutS-homologue MSH6), IPR017261 (DNA mismatch repair protein Msh6), IPR027417 (P-loop containing nucleoside triphosphate hydrolase) GO:0005524 (ATP binding), GO:0006298 (mismatch repair), GO:0030983 (mismatched DNA binding) Length=4445 Score = 25.4 bits (49), Expect(2) = 1.9 Identities = 8/12 (67%), Positives = 9/12 (75%), Gaps = 0/12 (0%) Frame = +2/-1 Query 125 FQNYLHPSNHPR 160 F YLHP NHP+ Sbjct 869 FFPYLHPQNHPQ 834 Score = 22.1 bits (42), Expect(2) = 1.9 Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 0/14 (0%) Frame = +3/-3 Query 63 HGRGSSCNPCSCLF 104 H R + N CSC F Sbjct 2685 HPRKADTNSCSCFF 2644 >Niben101Scf03250g00007.1 sp|Q8W234|SEUSS_ARATH *-*- Transcriptional corepressor SEUSS IPR029005 (LIM-domain binding protein/SEUSS) Length=3371 Score = 24.4 bits (47), Expect(2) = 2.1 Identities = 7/9 (78%), Positives = 8/9 (89%), Gaps = 0/9 (0%) Frame = +2/-2 Query 140 HPSNHPRSH 166 HPS+HPR H Sbjct 427 HPSSHPRRH 401 Score = 22.6 bits (43), Expect(2) = 2.1 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%) Frame = +3/-1 Query 87 PCSCLFGC 110 PC CL GC Sbjct 2036 PCCCLLGC 2013 >Niben101Scf23113g00023.1 AT5G05230.1 *-*- RING/U-box superfamily protein LENGTH=363 IPR013083 (Zinc finger, RING/FYVE/PHD-type) Length=2869 Score = 28.6 bits (56), Expect = 2.5 Identities = 10/18 (56%), Positives = 12/18 (67%), Gaps = 0/18 (0%) Frame = +2/-2 Query 113 LQLFFQNYLHPSNHPRSH 166 LQL F + HP +HPR H Sbjct 603 LQLHFHHCHHPRHHPRHH 550 >Niben101Scf12589g00006.1 AT2G38910.1 *-** calcium-dependent protein kinase 20 LENGTH=583 IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair) GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=2652 Score = 28.6 bits (56), Expect = 2.5 Identities = 11/33 (33%), Positives = 19/33 (58%), Gaps = 0/33 (0%) Frame = -2/+1 Query 160 PRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPW 62 P + K +++K L R PK++L ++L PW Sbjct 1495 PIISESAKDLVRKMLVRDPKKRLTAHEVLCHPW 1593 >Niben101Scf03283g04012.1 AT5G46800.1 *-*- Mitochondrial substrate carrier family protein LENGTH=300 IPR018108 (Mitochondrial substrate/solute carrier), IPR023395 (Mitochondrial carrier domain) Length=1791 Score = 28.6 bits (56), Expect = 2.5 Identities = 9/16 (56%), Positives = 10/16 (63%), Gaps = 0/16 (0%) Frame = +3/+3 Query 75 SSCNPCSCLFGCLCNC 122 S C P +CL GC NC Sbjct 702 SYCEPANCLRGCCWNC 749 >Niben101Scf01812g03005.1 AT2G38910.1 *-** calcium-dependent protein kinase 20 LENGTH=583 IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair) GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=2364 Score = 28.6 bits (56), Expect = 2.5 Identities = 10/33 (30%), Positives = 19/33 (58%), Gaps = 0/33 (0%) Frame = -2/+3 Query 160 PRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPW 62 P + K ++++ L R PK++L ++L PW Sbjct 1290 PAISESAKDLVRRMLARDPKKRLTAHEVLCHPW 1388 >Niben101Scf03541g00016.1 sp|Q9FJJ4|FB298_ARATH --*- F-box protein IPR001810 (F-box domain) GO:0005515 (protein binding) Length=468 Score = 28.6 bits (56), Expect = 2.5 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 0/15 (0%) Frame = +3/+1 Query 75 SSCNPCSCLFGCLCN 119 SSC P +C+F C C+ Sbjct 244 SSCKPVNCMFFCYCD 288 >Niben101Scf02370g00006.1 sp|Q9FEL7|LAX2_MEDTR *-*- Auxin transporter-like protein 2 IPR013057 (Amino acid transporter, transmembrane) Length=2363 Score = 28.6 bits (56), Expect = 2.5 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 0/19 (0%) Frame = +3/+2 Query 33 IPPPAKSYHRHGRGSSCNP 89 +PPP+K + RH S+ NP Sbjct 1550 LPPPSKRFSRHSCHSNANP 1606 >Niben101Scf09442g05004.1 ref|XP_007046503.1| *-*- Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao] gb|EOX90660.1| Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao] IPR015943 (WD40/YVTN repeat-like-containing domain) GO:0005515 (protein binding) Length=2071 Score = 28.6 bits (56), Expect = 2.5 Identities = 11/23 (48%), Positives = 15/23 (65%), Gaps = 0/23 (0%) Frame = +2/-1 Query 113 LQLFFQNYLHPSNHPRSHCISSM 181 L L FQ +L+PS HP C +S+ Sbjct 1447 LDLQFQCHLYPSQHPFRSCSTSL 1379 >Niben101Scf04738g05011.1 AT5G04870.1 *-** calcium dependent protein kinase 1 LENGTH=610 IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair) GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=2675 Score = 28.6 bits (56), Expect = 2.5 Identities = 10/33 (30%), Positives = 19/33 (58%), Gaps = 0/33 (0%) Frame = -2/+2 Query 160 PRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPW 62 P + K ++++ L R P+R+L ++L PW Sbjct 1655 PSISESAKDLMRRMLVRDPRRRLTAHEVLCHPW 1753 >Niben101Scf08137g02022.1 sp|Q7XSA2|AGO1B_ORYSJ *-*- Protein argonaute 1B IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785), IPR024357 (Argonaut, glycine-rich domain) GO:0003676 (nucleic acid binding), GO:0005515 (protein binding) Length=4482 Score = 28.6 bits (56), Expect = 2.5 Identities = 9/19 (47%), Positives = 11/19 (58%), Gaps = 0/19 (0%) Frame = +3/+3 Query 33 IPPPAKSYHRHGRGSSCNP 89 +PPP YH +GR C P Sbjct 2610 LPPPRLKYHDNGREKDCLP 2666 >Niben101Scf00057g00032.1 AT1G76040.2 *-** calcium-dependent protein kinase 29 LENGTH=561 IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair) GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=4017 Score = 28.6 bits (56), Expect = 2.5 Identities = 12/33 (36%), Positives = 17/33 (52%), Gaps = 0/33 (0%) Frame = -2/+1 Query 160 PRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPW 62 P + K ++KK L PKR++ Q L PW Sbjct 1048 PSISASAKDLVKKMLTVDPKRRITADQALEHPW 1146 >Niben101Scf00715g00004.1 sp|Q9FJJ4|FB298_ARATH --*- F-box protein IPR001810 (F-box domain), IPR017451 (F-box associated interaction domain) GO:0005515 (protein binding) Length=1053 Score = 28.6 bits (56), Expect = 2.5 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 0/15 (0%) Frame = +3/+1 Query 75 SSCNPCSCLFGCLCN 119 SSCNP +C+ C C+ Sbjct 34 SSCNPVNCILFCYCD 78 >Niben101Scf00887g01007.1 sp|Q7XSA2|AGO1B_ORYSJ *-*- Protein argonaute 1B IPR003100 (PAZ domain), IPR012337 (Ribonuclease H-like domain), IPR014811 (Domain of unknown function DUF1785), IPR024357 (Argonaut, glycine-rich domain) GO:0003676 (nucleic acid binding), GO:0005515 (protein binding) Length=4195 Score = 28.6 bits (56), Expect = 2.5 Identities = 9/19 (47%), Positives = 11/19 (58%), Gaps = 0/19 (0%) Frame = +3/+3 Query 33 IPPPAKSYHRHGRGSSCNP 89 +PPP YH +GR C P Sbjct 2109 LPPPRLKYHDNGREKDCLP 2165 >Niben101Scf09648g03008.1 AT5G49220.1 *-*- Protein of unknown function (DUF789) LENGTH=409 IPR008507 (Protein of unknown function DUF789) Length=2723 Score = 28.6 bits (56), Expect = 2.5 Identities = 8/14 (57%), Positives = 8/14 (57%), Gaps = 0/14 (0%) Frame = +3/-2 Query 81 CNPCSCLFGCLCNC 122 CN C C C CNC Sbjct 499 CNCCCCCCCCFCNC 458 >Niben101Scf06758g00003.1 ref|XP_002535501.1| --*- conserved hypothetical protein [Ricinus communis] gb|EEF26883.1| conserved hypothetical protein [Ricinus communis] Length=450 Score = 28.1 bits (55), Expect = 3.5 Identities = 10/19 (53%), Positives = 11/19 (58%), Gaps = 0/19 (0%) Frame = +3/+1 Query 42 PAKSYHRHGRGSSCNPCSC 98 PAK + G SC PCSC Sbjct 34 PAKRMYGSGTAVSCFPCSC 90 >Niben101Scf05109g02006.1 AT5G35200.1 *-*- ENTH/ANTH/VHS superfamily protein LENGTH=544 IPR008942 (ENTH/VHS), IPR011417 (AP180 N-terminal homology (ANTH) domain) GO:0005543 (phospholipid binding), GO:0005545 (1-phosphatidylinositol binding), GO:0030136 (clathrin-coated vesicle), GO:0030276 (clathrin binding), GO:0048268 (clathrin coat assembly) Length=3341 Score = 28.1 bits (55), Expect = 3.5 Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 0/18 (0%) Frame = +3/-1 Query 63 HGRGSSCNPCSCLFGCLC 116 +G S N C C+F C+C Sbjct 3110 NGFASLTNACPCMFSCIC 3057 >Niben101Scf04548g00001.1 sp|Q92BT1|MNTH_LISIN *-** Divalent metal cation transporter MntH IPR001046 (NRAMP family) GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane) Length=4590 Score = 28.1 bits (55), Expect = 3.5 Identities = 10/21 (48%), Positives = 14/21 (67%), Gaps = 0/21 (0%) Frame = +3/-1 Query 51 SYHRHGRGSSCNPCSCLFGCL 113 S++ RG SCN C+ +F CL Sbjct 4587 SFNYVKRGESCNFCNNIFSCL 4525 >Niben101Scf06113g01011.1 AT1G61760.1 *-*- Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=224 IPR004864 (Late embryogenesis abundant protein, LEA-14) Length=669 Score = 28.1 bits (55), Expect = 3.5 Identities = 11/24 (46%), Positives = 16/24 (67%), Gaps = 0/24 (0%) Frame = -2/-2 Query 184 SHRTNAMTPRMIRRVKIILKKQLQ 113 SH+ N M P + RRVK I++ L+ Sbjct 185 SHKMNPMIPTIARRVKKIVQTSLE 114 >Niben101Scf12414g01008.1 emb|CDY69766.1| *-*- BnaCnng65240D [Brassica napus] IPR009902 (Protein of unknown function DUF1442), IPR029063 (S-adenosyl-L-methionine-dependent methyltransferase) Length=974 Score = 28.1 bits (55), Expect = 3.5 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 0/26 (0%) Frame = +3/+3 Query 45 AKSYHRHGRGSSCNPCSCLFGCLCNC 122 AK H R SS C+ GCLC C Sbjct 153 AKRSRVHLRASSRK*CTTYGGCLCKC 230 >Niben101Scf01784g03001.1 AT1G45249.3 *-** abscisic acid responsive elements-binding factor 2 LENGTH=427 IPR004827 (Basic-leucine zipper domain) GO:0003700 (sequence-specific DNA binding transcription factor activity), GO:0006355 (regulation of transcription, DNA-templated), GO:0043565 (sequence-specific DNA binding) Length=1161 Score = 28.1 bits (55), Expect = 3.5 Identities = 8/19 (42%), Positives = 10/19 (53%), Gaps = 0/19 (0%) Frame = +3/-2 Query 66 GRGSSCNPCSCLFGCLCNC 122 G+ C C C GC C+C Sbjct 743 GKRGCCCCCCCCCGCCCSC 687 >Niben101Scf00508g00005.1 AT1G50700.1 *-** calcium-dependent protein kinase 33 LENGTH=521 IPR011009 (Protein kinase-like domain), IPR011992 (EF-hand domain pair) GO:0004672 (protein kinase activity), GO:0005509 (calcium ion binding), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=685 Score = 27.6 bits (54), Expect = 4.8 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 0/33 (0%) Frame = -2/+2 Query 160 PRMIRRVKIILKKQLQRHPKRQLHGLQLLPRPW 62 P + K + KK L PKR++ Q L PW Sbjct 296 PSISASAKDLAKKMLTVDPKRRITADQALEHPW 394 >Niben101Scf06898g01002.1 AT4G08850.1 *-*- Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045 IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2) GO:0005515 (protein binding) Length=4059 Score = 23.1 bits (44), Expect(2) = 5.8 Identities = 7/10 (70%), Positives = 7/10 (70%), Gaps = 0/10 (0%) Frame = +3/+1 Query 93 SCLFGCLCNC 122 SCL GC C C Sbjct 2356 SCLCGCSCYC 2385 Score = 22.6 bits (43), Expect(2) = 5.8 Identities = 6/9 (67%), Positives = 8/9 (89%), Gaps = 0/9 (0%) Frame = +2/+3 Query 152 HPRSHCISS 178 HPR+HC+ S Sbjct 3303 HPRNHCLPS 3329 >Niben101Scf05203g03015.1 sp|A2Z730|ILI7_ORYSI *-*- Transcription factor ILI7 IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain) GO:0046983 (protein dimerization activity) Length=776 Score = 27.2 bits (53), Expect = 6.6 Identities = 10/16 (63%), Positives = 10/16 (63%), Gaps = 0/16 (0%) Frame = +2/-1 Query 119 LFFQNYLHPSNHPRSH 166 L FQNY H SN P H Sbjct 764 LLFQNYQHESNTPIKH 717 >Niben101Scf02622g12049.1 AT5G24710.1 *-*- Transducin/WD40 repeat-like superfamily protein LENGTH=1377 IPR015943 (WD40/YVTN repeat-like-containing domain) GO:0005515 (protein binding) Length=4922 Score = 27.2 bits (53), Expect = 6.6 Identities = 9/16 (56%), Positives = 10/16 (63%), Gaps = 0/16 (0%) Frame = +3/-1 Query 75 SSCNPCSCLFGCLCNC 122 S C CSC F C C+C Sbjct 4262 SFCCRCSCGFCCRCSC 4215 >Niben101Scf11186g00001.1 sp|Q9M817|PTR6_ARATH *-*- Protein NRT1/ PTR FAMILY 1.2 IPR000109 (Proton-dependent oligopeptide transporter family), IPR020846 (Major facilitator superfamily domain) GO:0005215 (transporter activity), GO:0006810 (transport), GO:0016020 (membrane) Length=1921 Score = 27.2 bits (53), Expect = 6.6 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 0/14 (0%) Frame = -2/-3 Query 127 KKQLQRHPKRQLHG 86 K Q QRHPK +HG Sbjct 437 KNQKQRHPKEPIHG 396 >Niben101Scf03150g07003.1 AT3G46340.1 *-*- Leucine-rich repeat protein kinase family protein LENGTH=889 IPR001611 (Leucine-rich repeat), IPR024788 (Malectin-like carbohydrate-binding domain) GO:0005515 (protein binding) Length=2429 Score = 27.2 bits (53), Expect = 6.6 Identities = 11/23 (48%), Positives = 15/23 (65%), Gaps = 0/23 (0%) Frame = -2/-3 Query 130 LKKQLQRHPKRQLHGLQLLPRPW 62 +K +LQR PK + L+LL PW Sbjct 1908 VKNKLQRKPKENSNLLKLLRIPW 1840 >Niben101Scf00447g00004.1 Unknown protein Length=747 Score = 27.2 bits (53), Expect = 6.6 Identities = 9/17 (53%), Positives = 11/17 (65%), Gaps = 0/17 (0%) Frame = +3/-3 Query 27 PSIPPPAKSYHRHGRGS 77 P PPP + YH+H R S Sbjct 559 PRHPPPYQHYHQHQRSS 509 >Niben101Scf02830g02034.1 emb|CDY32792.1| *-*- BnaA10g10570D [Brassica napus] IPR015410 (Domain of unknown function DUF1985) Length=2204 Score = 27.2 bits (53), Expect = 6.6 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 0/34 (0%) Frame = +3/+3 Query 21 YGPSIPPPAKSYHRHGRGSSCNPCSCLFGCLCNC 122 Y P + KS H+H S C C G C+C Sbjct 1962 YIPYL*RDVKSEHQHTF*SQCR*CCIRGGACCSC 2063 >Niben101Scf01001g02006.1 sp|Q9C9J0|LHTL5_ARATH *-*- Lysine histidine transporter-like 5 IPR013057 (Amino acid transporter, transmembrane) Length=1409 Score = 27.2 bits (53), Expect = 6.6 Identities = 9/14 (64%), Positives = 9/14 (64%), Gaps = 0/14 (0%) Frame = +3/+3 Query 75 SSCNPCSCLFGCLC 116 S CN C LFGC C Sbjct 723 SLCNCCILLFGCCC 764 >Niben101Scf02563g06015.1 AT4G36600.1 *-*- Late embryogenesis abundant (LEA) protein LENGTH=353 IPR004238 (Late embryogenesis abundant protein, LEA-3) Length=1188 Score = 27.2 bits (53), Expect = 6.6 Identities = 10/15 (67%), Positives = 13/15 (87%), Gaps = 0/15 (0%) Frame = -2/+2 Query 181 HRTNAMTPRMIRRVK 137 HRTN +TPR++RR K Sbjct 341 HRTN*VTPRILRRRK 385 >Niben101Scf03169g05001.1 sp|Q9NGQ2|KIF1_DICDI *-** Kinesin-related protein 1 IPR001752 (Kinesin motor domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR027640 (Kinesin-like protein) GO:0003777 (microtubule motor activity), GO:0005524 (ATP binding), GO:0005871 (kinesin complex), GO:0007018 (microtubule-based movement), GO:0008017 (microtubule binding) Length=637 Score = 27.2 bits (53), Expect = 6.6 Identities = 12/31 (39%), Positives = 16/31 (52%), Gaps = 0/31 (0%) Frame = +3/-3 Query 9 NGAYYGPSIPPPAKSYHRHGRGSSCNPCSCL 101 NG+Y + P ++ Y GS C CSCL Sbjct 269 NGSYQ*STFPTYSQLYT*RHCGSDCFLCSCL 177 >Niben101Scf09099g00023.1 sp|Q75AA5|NTF2_ASHGO --** Nuclear transport factor 2 IPR002075 (Nuclear transport factor 2), IPR012677 (Nucleotide-binding alpha-beta plait domain) GO:0000166 (nucleotide binding), GO:0003676 (nucleic acid binding), GO:0005622 (intracellular), GO:0006810 (transport) Length=1316 Score = 27.2 bits (53), Expect = 6.6 Identities = 8/11 (73%), Positives = 9/11 (82%), Gaps = 0/11 (0%) Frame = +3/-1 Query 78 SCNPCSCLFGC 110 S NPC C+FGC Sbjct 1304 SRNPCCCVFGC 1272 >Niben101Scf39514g00007.1 gb|ADY76580.1| *-*- translocon at inner membrane of chloroplasts 21 [Brassica napus] IPR022051 (Protein of unknown function DUF3611) Length=913 Score = 27.2 bits (53), Expect = 6.6 Identities = 12/32 (38%), Positives = 16/32 (50%), Gaps = 0/32 (0%) Frame = +3/+2 Query 12 GAYYGPSIPPPAKSYHRHGRGSSCNPCSCLFG 107 GA+ +PP S H R S+ + C CL G Sbjct 647 GAFKKSCLPPVKNSSHGSIRNSTPSFCVCLLG 742 >Niben101Scf06267g00004.1 sp|Q56XU4|C3H6_ARATH *-*- Zinc finger CCCH domain-containing protein 6 Length=2747 Score = 27.2 bits (53), Expect = 6.6 Identities = 8/12 (67%), Positives = 11/12 (92%), Gaps = 0/12 (0%) Frame = +2/-3 Query 143 PSNHPRSHCISS 178 PSNHP++H +SS Sbjct 1347 PSNHPQNHAVSS 1312 >Niben101Scf02174g01001.1 sp|P47735|RLK5_ARATH *-** Receptor-like protein kinase 5 IPR011009 (Protein kinase-like domain) GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=849 Score = 27.2 bits (53), Expect = 6.6 Identities = 8/10 (80%), Positives = 9/10 (90%), Gaps = 0/10 (0%) Frame = +3/+3 Query 36 PPPAKSYHRH 65 PPP+KSYH H Sbjct 177 PPPSKSYHSH 206 >Niben101Scf03766g16006.1 sp|A8AAC1|FEN_IGNH4 *-** Flap endonuclease 1 IPR001044 (XPG/Rad2 endonuclease, eukaryotes), IPR006085 (XPG N-terminal), IPR029060 (PIN domain-like) GO:0003677 (DNA binding), GO:0003697 (single-stranded DNA binding), GO:0003824 (catalytic activity), GO:0004518 (nuclease activity), GO:0004519 (endonuclease activity), GO:0005634 (nucleus), GO:0006281 (DNA repair), GO:0006289 (nucleotide-excision repair), GO:0016788 (hydrolase activity, acting on ester bonds) Length=5430 Score = 23.5 bits (45), Expect(2) = 7.4 Identities = 9/15 (60%), Positives = 13/15 (87%), Gaps = 0/15 (0%) Frame = -2/+2 Query 157 RMIRRVKIILKKQLQ 113 RM+RRVK + +KQL+ Sbjct 530 RMMRRVKKLAQKQLE 574 Score = 22.1 bits (42), Expect(2) = 7.4 Identities = 7/12 (58%), Positives = 9/12 (75%), Gaps = 0/12 (0%) Frame = -3/+3 Query 51 ILLVAEWKGHNR 16 ILL+ WKG N+ Sbjct 4365 ILLLTSWKGENQ 4400 >Niben101Scf06144g00013.1 AT4G26540.1 *-*- Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1091 IPR001611 (Leucine-rich repeat), IPR013210 (Leucine-rich repeat-containing N-terminal, type 2), IPR025875 (Leucine rich repeat 4) GO:0005515 (protein binding) Length=5451 Score = 23.1 bits (44), Expect(2) = 7.4 Identities = 7/10 (70%), Positives = 7/10 (70%), Gaps = 0/10 (0%) Frame = +3/+3 Query 93 SCLFGCLCNC 122 SCL GC C C Sbjct 3849 SCLCGCSCYC 3878 Score = 22.6 bits (43), Expect(2) = 7.4 Identities = 6/9 (67%), Positives = 8/9 (89%), Gaps = 0/9 (0%) Frame = +2/+2 Query 152 HPRSHCISS 178 HPR+HC+ S Sbjct 4796 HPRNHCLPS 4822 >Niben101Scf02363g00015.1 sp|P48980|BGAL_SOLLC *-*- Beta-galactosidase IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain), IPR001944 (Glycoside hydrolase, family 35), IPR017853 (Glycoside hydrolase superfamily) GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds), GO:0005975 (carbohydrate metabolic process), GO:0030246 (carbohydrate binding) Length=3500 Score = 26.7 bits (52), Expect = 9.1 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 0/19 (0%) Frame = +2/-2 Query 113 LQLFFQNYLHPSNHPRSHC 169 + L ++ YL S+H R+HC Sbjct 1126 ISLVYKPYLEKSSHSRNHC 1070 >Niben101Scf11254g00007.1 ref|WP_023620087.1| *-*- membrane protein [Enterobacter cloacae] IPR005226 (UPF0014 family) Length=1460 Score = 26.7 bits (52), Expect = 9.1 Identities = 6/12 (50%), Positives = 11/12 (92%), Gaps = 0/12 (0%) Frame = +3/+2 Query 75 SSCNPCSCLFGC 110 ++C+ CSC++GC Sbjct 221 ANCSTCSCVYGC 256 >Niben101Scf00837g06003.1 sp|Q84WL9|AP2S_ARATH *-** AP-2 complex subunit sigma IPR016635 (Adaptor protein complex, sigma subunit) GO:0006810 (transport), GO:0008565 (protein transporter activity), GO:0015031 (protein transport), GO:0030122 (AP-2 adaptor complex) Length=2688 Score = 26.7 bits (52), Expect = 9.1 Identities = 10/16 (63%), Positives = 11/16 (69%), Gaps = 0/16 (0%) Frame = -2/-1 Query 106 PKRQLHGLQLLPRPWR 59 P R+ HGL LLP WR Sbjct 222 PLRRGHGLYLLPLKWR 175 >Niben101Scf01005g05015.1 sp|Q9FL33|MCM3_ARATH *-** DNA replication licensing factor MCM3 IPR001208 (Mini-chromosome maintenance, DNA-dependent ATPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase) GO:0003677 (DNA binding), GO:0005524 (ATP binding), GO:0006260 (DNA replication) Length=2613 Score = 26.7 bits (52), Expect = 9.1 Identities = 8/21 (38%), Positives = 13/21 (62%), Gaps = 0/21 (0%) Frame = +2/-3 Query 110 PLQLFFQNYLHPSNHPRSHCI 172 P+ +F + P NH RS+C+ Sbjct 751 PIPEYFLGF*SPDNHDRSYCL 689 >Niben101Scf03371g01018.1 emb|CDY15385.1| *-*- BnaC04g42380D [Brassica napus] Length=591 Score = 26.7 bits (52), Expect = 9.1 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 0/20 (0%) Frame = +3/-3 Query 42 PAKSYHRHGRGSSCNPCSCL 101 PA SY SSC PCS L Sbjct 442 PASSYLFPPSASSCQPCSAL 383 >Niben101Scf00508g01019.1 AT5G10460.1 *-*- Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=306 IPR006357 (HAD-superfamily hydrolase, subfamily IIA), IPR023214 (HAD-like domain) Length=1181 Score = 26.7 bits (52), Expect = 9.1 Identities = 7/14 (50%), Positives = 9/14 (64%), Gaps = 0/14 (0%) Frame = +3/-3 Query 75 SSCNPCSCLFGCLC 116 S+CN C C C+C Sbjct 705 STCNKCGCNSSCIC 664 >Niben101Scf01795g08010.1 sp|Q9LIG2|RLK6_ARATH *-** Receptor-like protein kinase IPR011009 (Protein kinase-like domain) GO:0004672 (protein kinase activity), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=2751 Score = 26.7 bits (52), Expect = 9.1 Identities = 8/18 (44%), Positives = 12/18 (67%), Gaps = 0/18 (0%) Frame = +2/-1 Query 113 LQLFFQNYLHPSNHPRSH 166 ++ +FQ LHPS H + H Sbjct 318 IKCYFQKTLHPSKHNKHH 265 >Niben101Scf02982g03019.1 AT3G23820.1 *-** UDP-D-glucuronate 4-epimerase 6 LENGTH=460 IPR001509 (NAD-dependent epimerase/dehydratase, N-terminal domain), IPR008089 (Nucleotide sugar epimerase) GO:0003824 (catalytic activity), GO:0005975 (carbohydrate metabolic process), GO:0016857 (racemase and epimerase activity, acting on carbohydrates and derivatives), GO:0050662 (coenzyme binding) Length=1353 Score = 26.7 bits (52), Expect = 9.1 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 0/20 (0%) Frame = +3/+2 Query 30 SIPPPAKSYHRHGRGSSCNP 89 S PPP+ HGR S +P Sbjct 227 SSPPPSTEAEHHGRNKSADP 286 >Niben101Scf33803g00005.1 sp|P0AAG7|MDLB_ECO57 *-** Multidrug resistance-like ATP-binding protein MdlB IPR003439 (ABC transporter-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase) GO:0005524 (ATP binding), GO:0006810 (transport), GO:0016021 (integral component of membrane), GO:0016887 (ATPase activity), GO:0042626 (ATPase activity, coupled to transmembrane movement of substances), GO:0055085 (transmembrane transport) Length=5655 Score = 26.7 bits (52), Expect = 9.1 Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 0/15 (0%) Frame = +2/-2 Query 140 HPSNHPRSHCISSMA 184 HP HP HC+ S A Sbjct 5063 HPHPHPHHHCLCSQA 5019 >Niben101Scf00390g05027.1 Unknown protein Length=3451 Score = 26.7 bits (52), Expect = 9.1 Identities = 8/21 (38%), Positives = 13/21 (62%), Gaps = 0/21 (0%) Frame = +2/-1 Query 110 PLQLFFQNYLHPSNHPRSHCI 172 P+ +F + P NH RS+C+ Sbjct 1768 PIPEYFLGF*SPDNHDRSYCL 1706 >Niben101Scf05286g00002.1 sp|P10538|AMYB_SOYBN *-** Beta-amylase IPR001554 (Glycoside hydrolase, family 14), IPR017853 (Glycoside hydrolase superfamily) GO:0000272 (polysaccharide catabolic process), GO:0005975 (carbohydrate metabolic process), GO:0016161 (beta-amylase activity) Length=2051 Score = 26.7 bits (52), Expect = 9.1 Identities = 10/21 (48%), Positives = 11/21 (52%), Gaps = 0/21 (0%) Frame = +3/+2 Query 60 RHGRGSSCNPCSCLFGCLCNC 122 R +GS CN C F LC C Sbjct 293 RSNQGSGCNI*QCPFSQLCAC 355 >Niben101Scf00057g00034.1 AT5G10460.1 *-*- Haloacid dehalogenase-like hydrolase (HAD) superfamily protein LENGTH=306 IPR006357 (HAD-superfamily hydrolase, subfamily IIA), IPR023214 (HAD-like domain) Length=1415 Score = 26.7 bits (52), Expect = 9.1 Identities = 7/14 (50%), Positives = 9/14 (64%), Gaps = 0/14 (0%) Frame = +3/-3 Query 75 SSCNPCSCLFGCLC 116 S+CN C C C+C Sbjct 837 STCNKCGCNSSCIC 796 >Niben101Scf03371g01005.1 sp|Q07977|SIA8B_RAT *-** Alpha-2,8-sialyltransferase 8B IPR001675 (Glycosyl transferase, family 29) GO:0006486 (protein glycosylation), GO:0008373 (sialyltransferase activity) Length=3307 Score = 26.7 bits (52), Expect = 9.1 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 0/20 (0%) Frame = +3/+3 Query 42 PAKSYHRHGRGSSCNPCSCL 101 PA SY SSC PCS L Sbjct 2523 PASSYLFPPSASSCQPCSAL 2582 >Niben101Scf05319g05007.1 AT3G06130.1 *-** Heavy metal transport/detoxification superfamily protein LENGTH=473 IPR006121 (Heavy metal-associated domain, HMA) GO:0030001 (metal ion transport), GO:0046872 (metal ion binding) Length=2915 Score = 26.7 bits (52), Expect = 9.1 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 0/33 (0%) Frame = +3/+2 Query 18 YYGPSIPPPAKSYHRHGRGSSCNPCSCLFGCLC 116 YY PPP+ SY + + N CS + C Sbjct 2345 YYYGPPPPPSDSYSTYFSDENTNSCSVM*AADC 2443 >Niben101Scf06876g00002.1 sp|Q9JI10|STK3_MOUSE *-** Serine/threonine-protein kinase 3 IPR011009 (Protein kinase-like domain) GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=2413 Score = 26.7 bits (52), Expect = 9.1 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 0/20 (0%) Frame = +2/-2 Query 107 MPLQLFFQNYLHPSNHPRSH 166 MP+ L QN+ H S H RSH Sbjct 969 MPIHLDHQNHNHCSIHCRSH 910 >Niben101Scf14814g00022.1 sp|Q5JIZ5|TKSP_THEKO *-** Subtilisin-like serine protease IPR015500 (Peptidase S8, subtilisin-related) GO:0004252 (serine-type endopeptidase activity), GO:0006508 (proteolysis) Length=4025 Score = 26.7 bits (52), Expect = 9.1 Identities = 6/11 (55%), Positives = 8/11 (73%), Gaps = 0/11 (0%) Frame = +3/+1 Query 90 CSCLFGCLCNC 122 C C +GC C+C Sbjct 2323 CQCTYGCQCHC 2355 >Niben101Scf10213g00009.1 Unknown protein Length=3590 Score = 26.7 bits (52), Expect = 9.1 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 0/19 (0%) Frame = +2/-3 Query 113 LQLFFQNYLHPSNHPRSHC 169 + L ++ YL S+H R+HC Sbjct 1218 ISLVYKPYLEKSSHSRNHC 1162 >Niben101Scf00684g00002.1 sp|P51153|RAB13_HUMAN *-*- Ras-related protein Rab-13 IPR001806 (Small GTPase superfamily), IPR002041 (Ran GTPase), IPR005225 (Small GTP-binding protein domain), IPR024156 (Small GTPase superfamily, ARF type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase) GO:0003924 (GTPase activity), GO:0005525 (GTP binding), GO:0005622 (intracellular), GO:0006184 (GTP catabolic process), GO:0006886 (intracellular protein transport), GO:0006913 (nucleocytoplasmic transport), GO:0007165 (signal transduction), GO:0007264 (small GTPase mediated signal transduction), GO:0015031 (protein transport), GO:0016020 (membrane) Length=1133 Score = 26.7 bits (52), Expect = 9.1 Identities = 8/11 (73%), Positives = 10/11 (91%), Gaps = 0/11 (0%) Frame = +3/-1 Query 33 IPPPAKSYHRH 65 IPPP+ SYHR+ Sbjct 833 IPPPSSSYHRY 801 >Niben101Scf11383g02020.1 sp|O61125|STK4_DICDI *-** Serine/threonine-protein kinase 4 homolog A IPR011009 (Protein kinase-like domain) GO:0004672 (protein kinase activity), GO:0004674 (protein serine/threonine kinase activity), GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=2509 Score = 26.7 bits (52), Expect = 9.1 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 0/20 (0%) Frame = +2/-1 Query 107 MPLQLFFQNYLHPSNHPRSH 166 MP+ L QN+ H S H RSH Sbjct 967 MPIHLDHQNHNHCSIHCRSH 908 Lambda K H 0.318 0.134 0.401 Effective search space used: 503697760 Database: N.benthamiana Genome v1.0.1 predicted cDNA Posted date: Mar 21, 2024 4:04 PM Number of letters in database: 82,582,885 Number of sequences in database: 57,140 Matrix: BLOSUM62 Neighboring words threshold: 13 Window for multiple hits: 40