BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: N.tabacum BX Genome
           420,216 sequences; 3,758,148,345 total letters



Query= Untitled_sequence

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Ntab-BX_AWOK-SS8667                                                   854     0.0  
Ntab-BX_AWOK-SS12830                                                  353     5e-95


>Ntab-BX_AWOK-SS8667 
Length=312997

 Score = 854 bits (462),  Expect = 0.0
 Identities = 462/462 (100%), Gaps = 0/462 (0%)
 Strand=Plus/Minus

Query  1       ACCAACTCGGTCCATTTGCACCCCTAATCATAATAGCTTTAATATTTCAAGATATTATTA  60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  113883  ACCAACTCGGTCCATTTGCACCCCTAATCATAATAGCTTTAATATTTCAAGATATTATTA  113824

Query  61      AGTTAACGTTGTCAATATCCTGGAAATTTTGCAAAATGAATCAAGCCTATATGGCTGTAA  120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  113823  AGTTAACGTTGTCAATATCCTGGAAATTTTGCAAAATGAATCAAGCCTATATGGCTGTAA  113764

Query  121     TATGAATTTAAAAGCAGCTCGATGTGGTGGTAATATGTAATTTACTTGATTCTAAAAAAA  180
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  113763  TATGAATTTAAAAGCAGCTCGATGTGGTGGTAATATGTAATTTACTTGATTCTAAAAAAA  113704

Query  181     TATCCCAAGTATTAATAATTTCTGCTAGGAAGAAGGTTAGCTACGATTTACAGCAAAGCC  240
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  113703  TATCCCAAGTATTAATAATTTCTGCTAGGAAGAAGGTTAGCTACGATTTACAGCAAAGCC  113644

Query  241     AGAATACAAAGAACCATAAAGTGATTGAAGCTCGAAATATACGAAGGAACAAATATTTTT  300
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  113643  AGAATACAAAGAACCATAAAGTGATTGAAGCTCGAAATATACGAAGGAACAAATATTTTT  113584

Query  301     AAAAAAATACGCAATGACTTGGAACAAAAGAAAGTGATATATTTTTTGTTCTTAAACAAG  360
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  113583  AAAAAAATACGCAATGACTTGGAACAAAAGAAAGTGATATATTTTTTGTTCTTAAACAAG  113524

Query  361     CATCCCCTCTAAAGAATGGCAGTTTTCCTTTGCATGTAACTATTATGCTCCCTTCGTTAC  420
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  113523  CATCCCCTCTAAAGAATGGCAGTTTTCCTTTGCATGTAACTATTATGCTCCCTTCGTTAC  113464

Query  421     AAAAATTTTGGACTACTATTGGGAACTTCTTCTGAAAATAGT  462
               ||||||||||||||||||||||||||||||||||||||||||
Sbjct  113463  AAAAATTTTGGACTACTATTGGGAACTTCTTCTGAAAATAGT  113422


>Ntab-BX_AWOK-SS12830 
Length=990674

 Score = 353 bits (191),  Expect = 5e-95
 Identities = 233/254 (92%), Gaps = 0/254 (0%)
 Strand=Plus/Minus

Query  1       ACCAACTCGGTCCATTTGCACCCCTAATCATAATAGCTTTAATATTTCAAGATATTATTA  60
               ||||| | |||| || |  |||||||||||| |||||||||||||| |||||||||||||
Sbjct  764508  ACCAATTTGGTCTATGTATACCCCTAATCATGATAGCTTTAATATTGCAAGATATTATTA  764449

Query  61      AGTTAACGTTGTCAATATCCTGGAAATTTTGCAAAATGAATCAAGCCTATATGGCTGTAA  120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  764448  AGTTAACGTTGTCAATATCCTGGAAATTTTGCAAAATGAATCAAGCCTATATGGCTGTAA  764389

Query  121     TATGAATTTAAAAGCAGCTCGATGTGGTGGTAATATGTAATTTACTTGATTCTAAAAAAA  180
               |||||||||||||||||||||||| ||||  ||||||||||||||| ||||||| |||| 
Sbjct  764388  TATGAATTTAAAAGCAGCTCGATGCGGTGACAATATGTAATTTACTCGATTCTATAAAAT  764329

Query  181     TATCCCAAGTATTAATAATTTCTGCTAGGAAGAAGGTTAGCTACGATTTACAGCAAAGCC  240
               | ||||||| || || || ||||| ||||||||||||||||||| |||||||||||||||
Sbjct  764328  TTTCCCAAGCATCAACAAGTTCTGTTAGGAAGAAGGTTAGCTACTATTTACAGCAAAGCC  764269

Query  241     AGAATACAAAGAAC  254
               ||||||||||||||
Sbjct  764268  AGAATACAAAGAAC  764255


 Score = 224 bits (121),  Expect = 4e-56
 Identities = 201/236 (85%), Gaps = 20/236 (8%)
 Strand=Plus/Minus

Query  245     TACAAAGAACCATAAAGTGATTGAAGCTCGAAATATACGAAGGAACAAATATT-------  297
               |||||||||||||||||||||||||||||||||||||||||||||| ||||||       
Sbjct  762321  TACAAAGAACCATAAAGTGATTGAAGCTCGAAATATACGAAGGAACGAATATTACAAAAA  762262

Query  298     ----------TTTAAAAAAATACGCAATGACTTGGAACAAAAGAAAGTGATATATTTTTT  347
                            |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct  762261  AAAAAAAAAAAAAAAAAAAATACGCAAGGACTTGGAACAAAAGAAAATGATATATTTTTT  762202

Query  348     GTTCTTAAA-CAAGCATCCCCTCTAAAGAATGGCAGTTTTCCTTTGCATGTAACTATTAT  406
               ||||||||| |||  ||||||||||||||||| |||||||||||||| ||| || |||||
Sbjct  762201  GTTCTTAAAACAAATATCCCCTCTAAAGAATG-CAGTTTTCCTTTGCTTGTCACGATTAT  762143

Query  407     GCTCCCTTCGTTACAAAAATTTTGGACTACTATTGGGAACTTCTTCTGAAAATAGT  462
               ||||||||| ||||||||| ||||||| | ||||||||||||||||||||| ||||
Sbjct  762142  GCTCCCTTCATTACAAAAACTTTGGACAAGTATTGGGAACTTCTTCTGAAA-TAGT  762088



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 1621819627545


  Database: N.tabacum BX Genome
    Posted date:  Mar 21, 2024  3:15 PM
  Number of letters in database: 3,758,148,345
  Number of sequences in database:  420,216



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5