BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome cDNA (ITAG release 2.40) 34,725 sequences; 41,981,568 total letters Query= Untitled_sequence Length=981 Score E Sequences producing significant alignments: (Bits) Value Solyc03g006800.1TCP transcription factor 21 SlTCP21 1784 0.0 Solyc08g080150.1TCP transcription factor 20 SlTCP20 117 2e-25 Solyc02g068200.1TCP transcription factor 18 SlTCP18 91.6 1e-17 Solyc06g070900.2TCP transcription factor 17 SlTCP17 82.4 6e-15 Solyc01g103780.2TCP transcription factor 11 SlTCP11 80.5 2e-14 Solyc09g008030.1TCP transcription factor 19 SlTCP19 76.8 3e-13 Solyc03g116320.2TCP transcription factor 16 SlTCP16 73.1 4e-12 >Solyc03g006800.1 TCP transcription factor 21 SlTCP21 Length=981 Score = 1784 bits (966), Expect = 0.0 Identities = 976/981 (99%), Gaps = 0/981 (0%) Strand=Plus/Plus Query 1 ATGGCGAGGGTTGAGAACAACCAAAACATTGAACAAGAAGATGACGAGGTGAACGACTGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGAGGGTTGAGAACAACCAAAACATTGAACAAGAAGATGACGAGGTGAACGACTGT 60 Query 61 AAGATTGATCCGTTACTTGGTGATTCTCATGAATACACCATTGCAGCGGTAGGGAATGTC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAGATTGATCCGTTACTTGGTGATTCTCATGAATACACCATTGCAGCGGTAGGGAATGTC 120 Query 121 ACCGATGCGGAAGGGGTGGATCCGTCTCCGGCGGCGTCCACTGATAGGGTGCTGTTGTTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACCGATGCGGAAGGGGTGGATCCGTCTCCGGCGGCGTCCACTGATAGGGTGCTGTTGTTA 180 Query 181 AAGGAAGAACCGGAGGAGAATGATTTGCGAGTTTCTACGTCGGTTGGGATGAATATGCAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAGGAAGAACCGGAGGAGAATGATTTGCGAGTTTCTACGTCGGTTGGGATGAATATGCAA 240 Query 241 TTGCAGAAGGTAGAGAAACAACCGGTGAAAAGATCCTCAAAGGACCGGCACACGAAAGTG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTGCAGAAGGTAGAGAAACAACCGGTGAAAAGATCCTCAAAGGACCGGCACACGAAAGTG 300 Query 301 GAAGGCCGTGGTCGGAGAATCCGTATGCCGGCGGCTTGTGCTGCTAGAATCTTCCAATTA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GAAGGCCGTGGTCGGAGAATCCGTATGCCGGCGGCTTGTGCTGCTAGAATCTTCCAATTA 360 Query 361 ACGCGGGAACTAGGTCATAAATCGGAAGGTGAAACTATAAGATGGCTTCTAGAACGCGCC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ACGCGGGAACTAGGTCATAAATCGGAAGGTGAAACTATAAGATGGCTTCTAGAACGCGCC 420 Query 421 GAGCCAGCCATCATTGCCGCTACTGGAACGGGTACGGTTCCGGCCATCGCGGTATCAGTA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GAGCCAGCCATCATTGCCGCTACTGGAACGGGTACGGTTCCGGCCATCGCGGTATCAGTA 480 Query 481 AACGGAACGCTGAAAATACCGACGTCAAACAACGAGGGAGAAAGCTCGAGGAAGAGAAGG 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AACGGAACGCTGAAAATACCGACGTCAAACAACGAGGGAGAAAGCTCGAGGAAGAGAAGG 540 Query 541 AAAAGGGCTGCAAATAGCGAGTTTTATGAGGCGTCAAATTTTGCACCGGTGGCTCCCATT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 AAAAGGGCTGCAAATAGCGAGTTTTATGAGGCGTCAAATTTTGCACCGGTGGCTCCCATT 600 Query 601 GCCCCACAAGGTCTTGTTCCTGTTTGGCCAGTGGGCTCTGGGAATGGACTTGTACCCACC 660 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 601 GCCCCACAAGGTCTTGTTCCTGTTTGGCCAGTGGGCTCTGGGAATGGACTTATTCCCACC 660 Query 661 ACAGCATTTACCGGTGGGGCAACTTTCTATATGCTGCCGCCAGGCACTAATACAACAGTT 720 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 661 ACAGCATTTACCGGTGGGGCAACTTTCTATATGCTACCGCCAGGCACTAATACAACAGTT 720 Query 721 GCTGCTACTGGGGCTCAGTTGTGGGCCACTCCAATACTTAATGTACCTTATGCAGCAACA 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 GCTGCTACTGGGGCTCAGTTGTGGGCCACTCCAATACTTAATGTACCTTATGCAGCAACA 780 Query 781 GGGGTCTCTGCTGCTTGTGTGTCAAAAAGTGATAACAATGGAGACAAGTTAAGCACAGTT 840 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 781 GGGGTCTCTGCTGCTTGTGTGTCAAAAAGTGATAACAATGGAGGCAAGTTAAGCACAGTT 840 Query 841 GCTTCAGCTATGCCTCCAAGTTCTAGTTCTACACAGATGCTTAGAGATTTCTCACTGGAG 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 GCTTCAGCTATGCCTCCAAGTTCTAGTTCTACACAGATGCTTAGAGATTTCTCACTGGAG 900 Query 901 ATTTATGAAAAGAGAGAGCTTCAGTTTATGGTTGGTTCTGGTTCCAGTGAAATTGATCAA 960 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 ATTTATGACAAGAGAGAGCTTCAGTTTATGGTTGGTTCTGGTTCCAGTGAAATTGATCAA 960 Query 961 ACTTCCTCATCTAAATCCTGA 981 ||||||||||||||||||||| Sbjct 961 ACTTCCTCATCTAAATCCTGA 981 >Solyc08g080150.1 TCP transcription factor 20 SlTCP20 Length=1113 Score = 117 bits (63), Expect = 2e-25 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 280 AAGGACCGGCACACGAAAGTGGAAGGCCGTGGTCGGAGAATCCGTATGCCGGCGGCTTGT 339 |||||||| ||||| ||||| ||||| ||||| ||||| ||||| || || || | ||| Sbjct 229 AAGGACCGCCACACAAAAGTAGAAGGACGTGGACGGAGGATCCGAATACCTGCTACATGT 288 Query 340 GCTGCTAGAATCTTCCAATTAACGCGGGAACTAGGTCATAAATCGGAAGGTGAAACTATA 399 || ||| | ||||||||||| || || |||||||||||||| || || || |||||| | Sbjct 289 GCAGCTCGGATCTTCCAATTGACCCGAGAACTAGGTCATAAGTCCGACGGAGAAACTGTT 348 Query 400 AGATGGCTTCTAGAACGCGCCGAGCCAGCCATCATTGCCGCTACTGGAACGGGTACGGTT 459 | ||| | || |||| || |||| | | || |||| ||||| ||||| || || || Sbjct 349 CGGTGGTTGCTTGAACAGGCGGAGCAATCTATAATTGAAGCTACCGGAACCGGAACTGTA 408 Query 460 CCGGCCATCGCGGTATCAGTAAACGGAACGCTGAAAATACCGACG 504 ||||| || || || || || ||||| || || || || |||||| Sbjct 409 CCGGCGATAGCAGTTTCTGTTAACGGTACTCTTAAGATTCCGACG 453 >Solyc02g068200.1 TCP transcription factor 18 SlTCP18 Length=819 Score = 91.6 bits (49), Expect = 1e-17 Identities = 132/171 (77%), Gaps = 9/171 (5%) Strand=Plus/Plus Query 287 GGCACACGAAAGTGGAAGGCCGTGGTCGGAGAATCCGTATGCCGGCGGCT-TGTGCTGCT 345 |||| || ||||| ||||| | || ||||||| |||||||||||| || ||||| || Sbjct 119 GGCATACAAAAGTTGAAGGTAGAGGGAGGAGAATACGTATGCCGGCG-CTCTGTGCAGCA 177 Query 346 AGAATCTTCCAATTAACGCGGGAACTAGGTCATAAATCGGAAGGTGAAACTATA-AGATG 404 ||||||||||| | ||||| ||| | ||||||||||| || ||||| || || || || Sbjct 178 AGAATCTTCCAGCTTACGCGCGAATTGGGTCATAAATCTGATGGTGAGACAATTCAG-TG 236 Query 405 GCTTCTAGAACGC--GCCGAGCCAGCCATCATTGCCGCTACTGGAAC-GGG 452 ||| || | | || |||||||| | || ||||| |||||||| || ||| Sbjct 237 GCTGCT-GCA-GCAAGCCGAGCCTTCGATTATTGCTGCTACTGGCACAGGG 285 >Solyc06g070900.2 TCP transcription factor 17 SlTCP17 Length=1552 Score = 82.4 bits (44), Expect = 6e-15 Identities = 140/187 (75%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 279 AAAGGACCGGCACACGAAAGTGGAAGGCCGTGGTCGGA-GAATCCGTATGCCGGCGGCTT 337 ||| ||||| ||||| || || || |||||||| | || | || ||||||||||| || Sbjct 477 AAA-GACCGCCACACTAAGGTTGATGGCCGTGG-CAGACGTATACGTATGCCGGCCCTTT 534 Query 338 GTGCTGCTAGAATCTTCCAATTAACGCGGGAACTAGGTCATAAATCGGAAGGTGAAACTA 397 |||||||||| | || || | || || ||||| ||||| ||||| || |||||||| | Sbjct 535 GTGCTGCTAGGGTTTTTCAGCTCACTCGAGAACTCGGTCACAAATCCGATGGTGAAACCA 594 Query 398 TAAGATGGCTTCTAGAACGCGCCGAGCCAGCCATCATTGCCGCTACTGGAACGGGTACGG 457 | ||||||||| ||| || || || || | || || ||||| ||||| ||||| Sbjct 595 TCGAATGGCTTCTTCAACAAGCTGAACCTGCAGTTATAGCTGCTACGGGAACAGGTACAA 654 Query 458 TTCCGGC 464 ||||||| Sbjct 655 TTCCGGC 661 >Solyc01g103780.2 TCP transcription factor 11 SlTCP11 Length=1546 Score = 80.5 bits (43), Expect = 2e-14 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 278 CAAAGGACCGGCACACGAAAGTGGAAGGCCGTGGTCGGAGAATCCGTATGCCGGCGGCTT 337 ||||||| |||||||| ||||| || || | || ||| | ||||| ||||| || || | Sbjct 471 CAAAGGATCGGCACACCAAAGTTGACGGGAGAGGGCGGCGCATCCGAATGCCAGCCGCAT 530 Query 338 GTGCTGCTAGAATCTTCCAATTAACGCGGGAACTAGGTCATAAATCGGAAGGTGAAACTA 397 |||| ||||| | || ||||| || | ||| |||| ||||| || || || ||||| | Sbjct 531 GTGCAGCTAGGGTTTTTCAATTGACCAGAGAATTAGGCCATAAGTCCGACGGAGAAACAA 590 Query 398 TAAGATGGCTTCTAGAACGCGCCGAGCCAGCCATCATTGCCGCTACTGG 446 | |||||| || | | ||||||||||||||||| || || ||||| Sbjct 591 TCGAATGGCTATTACAGCAAGCCGAGCCAGCCATCATAGCTGCCACTGG 639 >Solyc09g008030.1 TCP transcription factor 19 SlTCP19 Length=606 Score = 76.8 bits (41), Expect = 3e-13 Identities = 92/116 (79%), Gaps = 6/116 (5%) Strand=Plus/Plus Query 352 TTCCAATTAACGCGGGAACTAGGTCATAAATCGGAAGGTGAAACTATA-AGATGGCTTCT 410 || ||||||||| |||||||||||||| | || || ||||| ||| || |||||||| Sbjct 208 TTTCAATTAACGAAGGAACTAGGTCATAGGACTGACGGAGAAACGATAGAG-TGGCTTCT 266 Query 411 A-G-AACGCGCCGAGCCAGCCATCATTGCCGCTACTGGAACGGGTACGGTTCCGGC 464 | ||||| || ||||| ||||| || ||||| ||||| |||||||||||||| Sbjct 267 CCGTAACGCT--GAACCAGCAATCATCGCTGCTACAGGAACAGGTACGGTTCCGGC 320 >Solyc03g116320.2 TCP transcription factor 16 SlTCP16 Length=1418 Score = 73.1 bits (39), Expect = 4e-12 Identities = 134/180 (74%), Gaps = 5/180 (3%) Strand=Plus/Plus Query 278 CAAAGGACCGGCACACGAAAGTGGAAGGCCGTGGTCGGA-GAATCCGTATGCCGGCGGCT 336 |||| ||||| || || || || || || ||||| | || | ||||| ||||| ||| | Sbjct 279 CAAA-GACCGTCATACTAAGGTTGATGGTCGTGG-CAGACGTATCCGCATGCCTGCGCTT 336 Query 337 TGTGCTGCTAGAATCTTCCAATTAACGCGGGAACTAGGTCATAAATCGGAAGGTGAAACT 396 ||||| ||||| | || || | || || ||||| ||||||||||| || || ||||| Sbjct 337 TGTGCGGCTAGGGTTTTTCAGCTCACACGAGAACTCGGTCATAAATCCGATGGCGAAACA 396 Query 397 ATA-AGATGGCTTCTAGAACGCGCCGAGCCAGCCATCATTGCCGCTACTGGAACGGGTAC 455 ||| || ||||| || ||| || || ||||| | || |||||||| ||||| ||||| Sbjct 397 ATAGAG-TGGCTACTTCAACAAGCGGAACCAGCAGTAATCGCCGCTACAGGAACTGGTAC 455 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39304451508 Database: Tomato Genome cDNA (ITAG release 2.40) Posted date: Mar 21, 2024 3:33 PM Number of letters in database: 41,981,568 Number of sequences in database: 34,725 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5