BLASTP 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Stuberosum_proteins.ITAG1.wfunct.fasta
           35,004 sequences; 12,505,031 total letters



Query= Untitled_sequence

Length=176
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Sotub03g018250.1.1TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)                    283     1e-99
Sotub11g006560.1.1TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)                    152     1e-47
Sotub11g011940.1.1TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)                    125     4e-38
Sotub11g005600.1.1TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)                    106     5e-30


>Sotub03g018250.1.1 TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)
Length=135

 Score = 283 bits (723),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 135/135 (100%), Positives = 135/135 (100%), Gaps = 0/135 (0%)

Query  42   MAEANSAVTGNTNVGPHRKLLNQGNEVETNRIWGDKCSKSDIVINQGPTAPLPSGIPTYT  101
            MAEANSAVTGNTNVGPHRKLLNQGNEVETNRIWGDKCSKSDIVINQGPTAPLPSGIPTYT
Sbjct  1    MAEANSAVTGNTNVGPHRKLLNQGNEVETNRIWGDKCSKSDIVINQGPTAPLPSGIPTYT  60

Query  102  VEIMNVCVSGCDISGIHLSCGWFSSARLINPRIFKRLHFDDCLVNDGKPLINGHTISFQY  161
            VEIMNVCVSGCDISGIHLSCGWFSSARLINPRIFKRLHFDDCLVNDGKPLINGHTISFQY
Sbjct  61   VEIMNVCVSGCDISGIHLSCGWFSSARLINPRIFKRLHFDDCLVNDGKPLINGHTISFQY  120

Query  162  ANTFRYPLSVSSVVC  176
            ANTFRYPLSVSSVVC
Sbjct  121  ANTFRYPLSVSSVVC  135


>Sotub11g006560.1.1 TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)
Length=162

 Score = 152 bits (385),  Expect = 1e-47, Method: Compositional matrix adjust.
 Identities = 72/113 (64%), Positives = 88/113 (78%), Gaps = 1/113 (1%)

Query  65   GNEVETNRIWGDKCSKSDIVINQGPTAPLPSGIPTYTVEIMNVCVSG-CDISGIHLSCGW  123
            G +   NRI    CS   I +NQGP+A LPSGIPTYTV ++N C SG C IS IHLSCGW
Sbjct  50   GGDGSENRIGEGTCSNKFIQVNQGPSASLPSGIPTYTVIVLNACFSGSCSISNIHLSCGW  109

Query  124  FSSARLINPRIFKRLHFDDCLVNDGKPLINGHTISFQYANTFRYPLSVSSVVC  176
            FSSARLINP+IF+RL+++DCLVNDG+PL  G +++F YANTF Y L+VSS+VC
Sbjct  110  FSSARLINPKIFRRLNYNDCLVNDGQPLTAGQSLTFSYANTFPYKLAVSSIVC  162


>Sotub11g011940.1.1 TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)
Length=100

 Score = 125 bits (315),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 76/100 (76%), Gaps = 3/100 (3%)

Query  78   CSKSDIVINQGPTAPLPSGIPTYTVEIMNVCVS-GCDISGIHLSCGWFSSARLINPRIFK  136
            C++  I+INQGP   LPSGIP Y V I N+CV+ GC    IH++CGWFSSARLINP+IF+
Sbjct  2    CTEGSILINQGPAGTLPSGIPLYVVIIQNMCVAKGC--GNIHMTCGWFSSARLINPKIFR  59

Query  137  RLHFDDCLVNDGKPLINGHTISFQYANTFRYPLSVSSVVC  176
            RL  +DCLVNDGKPL  G +++F YANTF Y ++V SV C
Sbjct  60   RLGKNDCLVNDGKPLGPGSSLTFAYANTFPYHIAVKSVTC  99


>Sotub11g005600.1.1 TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)
Length=115

 Score = 106 bits (264),  Expect = 5e-30, Method: Compositional matrix adjust.
 Identities = 51/99 (52%), Positives = 68/99 (69%), Gaps = 3/99 (3%)

Query  78   CSKSDIVINQGPTAPLPSGIPTYTVEIMNVCVSGCDISGIHLSCGWFSSARLINPRIFKR  137
            C KS I + QG    +  GIP Y V+I+N C S CD   IH+SCG F+S +LINP  F+R
Sbjct  19   CPKSRIQVTQGAIGTI-GGIPQYRVQIVNGCESICD--SIHVSCGQFASTKLINPWTFRR  75

Query  138  LHFDDCLVNDGKPLINGHTISFQYANTFRYPLSVSSVVC  176
            L  +DCLVN+G P+ +G  ISF Y NTF+YP++V+S +C
Sbjct  76   LAINDCLVNNGAPMKSGQVISFTYTNTFKYPMTVTSSMC  114



Lambda      K        H        a         alpha
   0.323    0.139    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 779911692


  Database: Stuberosum_proteins.ITAG1.wfunct.fasta
    Posted date:  Jun 25, 2024  1:46 PM
  Number of letters in database: 12,505,031
  Number of sequences in database:  35,004



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40