BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= Untitled_sequence

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch12                                                             387     4e-106


>SL4.0ch12 
Length=66688036

 Score = 387 bits (209),  Expect = 4e-106
 Identities = 209/209 (100%), Gaps = 0/209 (0%)
 Strand=Plus/Plus

Query  1         TTCACTATAGTCTTGTTGTGTTGCCCGCAAGAATTGCAGCTTTAGGTTCTGAATGAAGGA  60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  15245937  TTCACTATAGTCTTGTTGTGTTGCCCGCAAGAATTGCAGCTTTAGGTTCTGAATGAAGGA  15245996

Query  61        CAGGGCTAGAAGACCTTCTCTATCAAAGTATGGATGTGCTAAAGCTGTCTTTGCACTAAT  120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  15245997  CAGGGCTAGAAGACCTTCTCTATCAAAGTATGGATGTGCTAAAGCTGTCTTTGCACTAAT  15246056

Query  121       TCTTTGGCGTGCTTTGAAACGTACCATAGATGTTAATAGCTCCCACCCTATTCCACCATC  180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  15246057  TCTTTGGCGTGCTTTGAAACGTACCATAGATGTTAATAGCTCCCACCCTATTCCACCATC  15246116

Query  181       CAAATCTAACAACTCGAAGCCTTTCCTAA  209
                 |||||||||||||||||||||||||||||
Sbjct  15246117  CAAATCTAACAACTCGAAGCCTTTCCTAA  15246145



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 142418582124


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5