BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= SLM6‐17

Length=45
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch06                                                             38.1    0.058
SL4.0ch12                                                             34.4    0.75 


>SL4.0ch06 
Length=47258699

 Score = 38.1 bits (20),  Expect = 0.058
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Plus

Query  1         TCCTTCAAATCTCCCATCAA  20
                 ||||||||||||||||||||
Sbjct  36319734  TCCTTCAAATCTCCCATCAA  36319753


 Score = 38.1 bits (20),  Expect = 0.058
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  26        ACGAGCAATTGCAAGGAAAA  45
                 ||||||||||||||||||||
Sbjct  36319925  ACGAGCAATTGCAAGGAAAA  36319906


>SL4.0ch12 
Length=66688036

 Score = 34.4 bits (18),  Expect = 0.75
 Identities = 18/18 (100%), Gaps = 0/18 (0%)
 Strand=Plus/Plus

Query  3        CTTCAAATCTCCCATCAA  20
                ||||||||||||||||||
Sbjct  2030132  CTTCAAATCTCCCATCAA  2030149



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 16432914141


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5