BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato genome chromosomes (Build SL4.0) 13 sequences; 782,520,033 total letters Query= Untitled_sequence Length=499 Score E Sequences producing significant alignments: (Bits) Value SL4.0ch03 922 0.0 SL4.0ch12 137 1e-30 >SL4.0ch03 Length=65298490 Score = 922 bits (499), Expect = 0.0 Identities = 499/499 (100%), Gaps = 0/499 (0%) Strand=Plus/Plus Query 1 ACAACCAAAAGCGGATCTCCGCCTTTTTGAAAAGCTTCAACAAAATCATTGATATGAACA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1100162 ACAACCAAAAGCGGATCTCCGCCTTTTTGAAAAGCTTCAACAAAATCATTGATATGAACA 1100221 Query 61 CAATTATTATCCGTTCCTCGTTGAAGAATGTCATAAATTTCCTCTGGAAATTGTTTCCTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1100222 CAATTATTATCCGTTCCTCGTTGAAGAATGTCATAAATTTCCTCTGGAAATTGTTTCCTA 1100281 Query 121 ACATCGTTGATACGGAGCACTCTGAAAAGAACGTCATAGTATTTCTCACAGTTGAGACAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1100282 ACATCGTTGATACGGAGCACTCTGAAAAGAACGTCATAGTATTTCTCACAGTTGAGACAC 1100341 Query 181 AGTAAGCACAGGATAAACACCAATCTCAAGACCATTTGCTTATAGTACATTTCAACATTG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1100342 AGTAAGCACAGGATAAACACCAATCTCAAGACCATTTGCTTATAGTACATTTCAACATTG 1100401 Query 241 ATTTTCGATCGAGCAATCCACTCTACTGTACAAGCTTTGTCAAAAATGAGTTGTTGTACC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1100402 ATTTTCGATCGAGCAATCCACTCTACTGTACAAGCTTTGTCAAAAATGAGTTGTTGTACC 1100461 Query 301 ATCACAAGAATGGAATCATATAATTCTTCTAAAACCGGTGTCTTAATAGCATTCTTAGAC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1100462 ATCACAAGAATGGAATCATATAATTCTTCTAAAACCGGTGTCTTAATAGCATTCTTAGAC 1100521 Query 361 GTTGGTCGGGATTCAAACTGCTCAGACATCAGCCATTCCACGAATGAAGATTTAAACACG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1100522 GTTGGTCGGGATTCAAACTGCTCAGACATCAGCCATTCCACGAATGAAGATTTAAACACG 1100581 Query 421 AAGAACATTCCATGATACTGAGATACCAAAATCAGGAAATGCTCAAGAAGATACAAGAAA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1100582 AAGAACATTCCATGATACTGAGATACCAAAATCAGGAAATGCTCAAGAAGATACAAGAAA 1100641 Query 481 CAGACAGGGGAGAAACAGT 499 ||||||||||||||||||| Sbjct 1100642 CAGACAGGGGAGAAACAGT 1100660 >SL4.0ch12 Length=66688036 Score = 137 bits (74), Expect = 1e-30 Identities = 305/419 (73%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 84 AAGAATGTCATA-AATTTCCTCTGGAAATTGTTTCCTAACATCGTTGATACGGAGCACTC 142 ||||||| ||| || | | || |||| || ||||||||||||||| | | ||||| Sbjct 4483705 AAGAATGCTATAGAAATACTTC-GGAAGCTGGTTCCTAACATCGTTGTTTCTGAGCATAA 4483647 Query 143 TGAAAAGAACGTCATAGTATTTCTCACAGTTGAGACACAGTAAGCACAGGATAAAC-ACC 201 | ||||||| |||||||||||| ||| ||| | |||||| ||||| || | ||| ||| Sbjct 4483646 AGGAAAGAACATCATAGTATTTCCCACTGTTCACACACAGCAAGCATAG-AACAACAACC 4483588 Query 202 AATCTCAAGACCATTTGCTTATAGTACATTTCAACATTGATTTTCGATCGAGCAATCCAC 261 ||||||| |||| | | | ||||| |||| ||| || ||||||| | |||||| Sbjct 4483587 AATCTCATAACCAATATCCTGTAGTATGCATCAAAATTTATCCTCGATCGTGTAATCCAA 4483528 Query 262 TCTACTGTACAAGCTTTGTCAAAAATGAGTTGTTGTACCATCACAAGAATGGAATCATAT 321 |||||| |||| || ||| || |||||||||||||| ||||| |||| ||| Sbjct 4483527 AGAGCTGTACTGCCTTTATCGGAAAGGAATTGTTGTACCATCATAAGAACAGAATGATAG 4483468 Query 322 AATTCTTCTAAA-ACCGGTGTCTTAATAGCATTCTTAGACGTTGGTCGGGATTCAAACTG 380 || | ||| ||| || | || || |||||| ||| || || || || ||| |||| Sbjct 4483467 AACTTTTCCAAAGACTGTTGGTTT-ATAGCAACCTTGGAAGTGTGTAGGACCTCAGACTG 4483409 Query 381 CTCAGACATCAGCCATTCCACGAATGAAGATTTAAACACGAAGAACATTCCATGATACTG 440 ||| || |||||||||||||| ||||| ||||| ||| || | || | | |||| Sbjct 4483408 CTCGGAAATCAGCCATTCCACCAATGATGATTTCGTGGTGAAAAAGAACCCTTTAGACTG 4483349 Query 441 AGATACCAAAATCAGGAAATGCTCAAGAAGATACAAGAAACAGACAGGGGAGAAACAGT 499 || |||||||| | || |||| | ||||||||||||||| ||||||||| | ||| Sbjct 4483348 TGACACCAAAATAAAAAAGCGCTCTACAAGATACAAGAAACAACCAGGGGAGATATAGT 4483290 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 368566764099 Database: Tomato genome chromosomes (Build SL4.0) Posted date: Mar 21, 2024 4:17 PM Number of letters in database: 782,520,033 Number of sequences in database: 13 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5