BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: N.benthamiana Genome v1.0.1 predicted proteins 57,140 sequences; 18,711,326 total letters Query= Acc28506.1 Length=176 Score E Sequences producing significant alignments: (Bits) Value Niben101Scf04196g00003.1sp|P26573|RBS8_NICPL ***- Ribulose bispho... 233 4e-79 Niben101Scf04196g00005.1sp|P69250|RBS1_NICSY ***- Ribulose bispho... 233 5e-79 Niben101Scf03015g06015.1sp|P26573|RBS8_NICPL ***- Ribulose bispho... 230 5e-78 Niben101Scf03015g06014.1sp|P26573|RBS8_NICPL ***- Ribulose bispho... 230 5e-78 Niben101Ctg10718g00002.1sp|P26573|RBS8_NICPL ***- Ribulose bispho... 226 2e-76 Niben101Scf02381g04022.1sp|P26573|RBS8_NICPL ***- Ribulose bispho... 225 7e-76 Niben101Scf01991g05012.1sp|P26573|RBS8_NICPL ***- Ribulose bispho... 223 6e-75 Niben101Scf01991g04009.1sp|P26573|RBS8_NICPL ***- Ribulose bispho... 223 6e-75 Niben101Scf01991g05015.1sp|P26573|RBS8_NICPL ***- Ribulose bispho... 220 7e-74 Niben101Scf16221g01007.1sp|P16031|RBS_LARLA ***- Ribulose bisphos... 178 1e-57 Niben101Scf01831g00001.1sp|O64416|RBS_MARPA ***- Ribulose bisphos... 164 9e-52 Niben101Scf01991g04010.1sp|P26573|RBS8_NICPL ***- Ribulose bispho... 162 1e-51 >Niben101Scf04196g00003.1 sp|P26573|RBS8_NICPL ***- Ribulose bisphosphate carboxylase small chain 8B, chloroplastic IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain) Length=180 Score = 233 bits (594), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 106/180 (59%), Positives = 138/180 (77%), Gaps = 6/180 (3%) Query 1 MAASTISSSAV---TSVTRASLASPFAGVKSPSAISLGRKLE---SGSRSSGFKVKCMQV 54 MA+S +SS+AV ++V +A++ +PF G+KS ++ + RK + S+G +V+CMQV Sbjct 1 MASSVLSSAAVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQV 60 Query 55 WPPLGKKKFETLSYLPPLPEEALLKQIDYLIRMGWIPCIEFSVGEGFVYREHHHSPGYYD 114 WPP+ KKK+ETLSYLP L E LL +I+YL++ GW+PC+EF GFVYREHH SPGYYD Sbjct 61 WPPINKKKYETLSYLPDLSVEQLLSEIEYLLKNGWVPCLEFETERGFVYREHHKSPGYYD 120 Query 115 GRYWTMWKLPMYGCTDSTQVRAEVEANKKEYPDSFIRIIGFDNKRQVQCVSFIVHTPPSF 174 GRYWTMWKLPM+GCTD+TQV AEVE KK YP ++IRIIGFDN RQVQC+SFI + P + Sbjct 121 GRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 180 >Niben101Scf04196g00005.1 sp|P69250|RBS1_NICSY ***- Ribulose bisphosphate carboxylase small chain, chloroplastic IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain) Length=180 Score = 233 bits (593), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 106/180 (59%), Positives = 138/180 (77%), Gaps = 6/180 (3%) Query 1 MAASTISSSAV---TSVTRASLASPFAGVKSPSAISLGRKLE---SGSRSSGFKVKCMQV 54 MA+S +SS+AV ++V +A++ +PF G+KS ++ + RK + S+G +V+CMQV Sbjct 1 MASSVLSSAAVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQV 60 Query 55 WPPLGKKKFETLSYLPPLPEEALLKQIDYLIRMGWIPCIEFSVGEGFVYREHHHSPGYYD 114 WPP+ KKK+ETLSYLP L E LL +I+YL++ GW+PC+EF GFVYREHH SPGYYD Sbjct 61 WPPINKKKYETLSYLPDLSVEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHHKSPGYYD 120 Query 115 GRYWTMWKLPMYGCTDSTQVRAEVEANKKEYPDSFIRIIGFDNKRQVQCVSFIVHTPPSF 174 GRYWTMWKLPM+GCTD+TQV AEVE KK YP ++IRIIGFDN RQVQC+SFI + P + Sbjct 121 GRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 180 >Niben101Scf03015g06015.1 sp|P26573|RBS8_NICPL ***- Ribulose bisphosphate carboxylase small chain 8B, chloroplastic IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain) Length=180 Score = 230 bits (587), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 104/180 (58%), Positives = 138/180 (77%), Gaps = 6/180 (3%) Query 1 MAASTISSSAV---TSVTRASLASPFAGVKSPSAISLGRKLE---SGSRSSGFKVKCMQV 54 MA+S +SS+AV ++V +A++ +PF G+KS ++ + RK + S+G +V+CMQV Sbjct 1 MASSVLSSAAVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQV 60 Query 55 WPPLGKKKFETLSYLPPLPEEALLKQIDYLIRMGWIPCIEFSVGEGFVYREHHHSPGYYD 114 WPP+ KK+ETLSYLP L +E LL +I+YL++ GW+PC+EF +GFVYREHH SPGYYD Sbjct 61 WPPINMKKYETLSYLPDLSQEQLLSEIEYLLKNGWVPCLEFETEKGFVYREHHKSPGYYD 120 Query 115 GRYWTMWKLPMYGCTDSTQVRAEVEANKKEYPDSFIRIIGFDNKRQVQCVSFIVHTPPSF 174 GRYWTMWKLPM+GCTD+TQV AEV KKEYP +++RIIGFDN RQVQC+SFI P + Sbjct 121 GRYWTMWKLPMFGCTDATQVLAEVGEAKKEYPQAWVRIIGFDNVRQVQCISFIASKPDGY 180 >Niben101Scf03015g06014.1 sp|P26573|RBS8_NICPL ***- Ribulose bisphosphate carboxylase small chain 8B, chloroplastic IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain) Length=180 Score = 230 bits (587), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 104/180 (58%), Positives = 138/180 (77%), Gaps = 6/180 (3%) Query 1 MAASTISSSAV---TSVTRASLASPFAGVKSPSAISLGRKLE---SGSRSSGFKVKCMQV 54 MA+S +SS+AV ++V +A++ +PF G+KS ++ + RK + S+G +V+CMQV Sbjct 1 MASSVLSSAAVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQV 60 Query 55 WPPLGKKKFETLSYLPPLPEEALLKQIDYLIRMGWIPCIEFSVGEGFVYREHHHSPGYYD 114 WPP+ KK+ETLSYLP L +E LL +I+YL++ GW+PC+EF +GFVYREHH SPGYYD Sbjct 61 WPPINMKKYETLSYLPDLSQEQLLSEIEYLLKNGWVPCLEFETEKGFVYREHHKSPGYYD 120 Query 115 GRYWTMWKLPMYGCTDSTQVRAEVEANKKEYPDSFIRIIGFDNKRQVQCVSFIVHTPPSF 174 GRYWTMWKLPM+GCTD+TQV AEV KKEYP +++RIIGFDN RQVQC+SFI P + Sbjct 121 GRYWTMWKLPMFGCTDATQVLAEVGEAKKEYPQAWVRIIGFDNVRQVQCISFIASKPDGY 180 >Niben101Ctg10718g00002.1 sp|P26573|RBS8_NICPL ***- Ribulose bisphosphate carboxylase small chain 8B, chloroplastic IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain) Length=177 Score = 226 bits (576), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 102/177 (58%), Positives = 135/177 (76%), Gaps = 6/177 (3%) Query 4 STISSSAV---TSVTRASLASPFAGVKSPSAISLGRKLE---SGSRSSGFKVKCMQVWPP 57 S +SS+AV ++V +A++ +PF G+KS ++ + RK + S+G +V+CMQVWPP Sbjct 1 SVLSSAAVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPP 60 Query 58 LGKKKFETLSYLPPLPEEALLKQIDYLIRMGWIPCIEFSVGEGFVYREHHHSPGYYDGRY 117 + KK+ETLSYLP L +E LL +I+YL++ GW+PC+EF +GFVYREHH SPGYYDGRY Sbjct 61 INMKKYETLSYLPDLSQEQLLSEIEYLLKNGWVPCLEFETEKGFVYREHHKSPGYYDGRY 120 Query 118 WTMWKLPMYGCTDSTQVRAEVEANKKEYPDSFIRIIGFDNKRQVQCVSFIVHTPPSF 174 WTMWKLPM+GCTD+TQV AEV KKEYP +++RIIGFDN RQVQC+SFI P + Sbjct 121 WTMWKLPMFGCTDATQVLAEVGEAKKEYPQAWVRIIGFDNVRQVQCISFIASKPDGY 177 >Niben101Scf02381g04022.1 sp|P26573|RBS8_NICPL ***- Ribulose bisphosphate carboxylase small chain 8B, chloroplastic IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain) Length=181 Score = 225 bits (573), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 100/167 (60%), Positives = 129/167 (77%), Gaps = 5/167 (3%) Query 12 TSVTRASLASPFAGVKSPSAISLGRK----LESGSRSSGFKVKCMQVWPPLGKKKFETLS 67 + +AS+ +PF G+K+ S+ + RK + S +R+ G +V+CMQVWPP+ KKK+ETLS Sbjct 16 ANAVQASMVAPFTGLKAASSFPVSRKQNLDITSIARNGG-RVQCMQVWPPINKKKYETLS 74 Query 68 YLPPLPEEALLKQIDYLIRMGWIPCIEFSVGEGFVYREHHHSPGYYDGRYWTMWKLPMYG 127 YLP L E LL +I+YL++ GW+PC+EF GFVYREHHHSPGYYDGRYWTMWKLPM+G Sbjct 75 YLPDLSVEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHHHSPGYYDGRYWTMWKLPMFG 134 Query 128 CTDSTQVRAEVEANKKEYPDSFIRIIGFDNKRQVQCVSFIVHTPPSF 174 CTD+TQV AEVE KK YP +++RIIGFDN RQVQC+SFI + P + Sbjct 135 CTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEGY 181 >Niben101Scf01991g05012.1 sp|P26573|RBS8_NICPL ***- Ribulose bisphosphate carboxylase small chain 8B, chloroplastic IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain) Length=181 Score = 223 bits (567), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 97/162 (60%), Positives = 126/162 (78%), Gaps = 3/162 (2%) Query 16 RASLASPFAGVKSPSAISLGRKLE---SGSRSSGFKVKCMQVWPPLGKKKFETLSYLPPL 72 +AS+ +PF G+KS ++ + RK + S+G +V+CMQVWPP+ KKK+ETLSYLP L Sbjct 20 QASMVAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDL 79 Query 73 PEEALLKQIDYLIRMGWIPCIEFSVGEGFVYREHHHSPGYYDGRYWTMWKLPMYGCTDST 132 +E LL +++YL++ GW+PC+EF GFVYREHH SPGYYDGRYWTMWKLPM+GCTD+T Sbjct 80 SQEQLLSEVEYLLKNGWVPCLEFETERGFVYREHHSSPGYYDGRYWTMWKLPMFGCTDAT 139 Query 133 QVRAEVEANKKEYPDSFIRIIGFDNKRQVQCVSFIVHTPPSF 174 QV AEVE KK YP +++RIIGFDN RQVQC+SFI + P + Sbjct 140 QVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEGY 181 >Niben101Scf01991g04009.1 sp|P26573|RBS8_NICPL ***- Ribulose bisphosphate carboxylase small chain 8B, chloroplastic IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain) Length=181 Score = 223 bits (567), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 97/162 (60%), Positives = 126/162 (78%), Gaps = 3/162 (2%) Query 16 RASLASPFAGVKSPSAISLGRKLE---SGSRSSGFKVKCMQVWPPLGKKKFETLSYLPPL 72 +AS+ +PF G+KS ++ + RK + S+G +V+CMQVWPP+ KKK+ETLSYLP L Sbjct 20 QASMVAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDL 79 Query 73 PEEALLKQIDYLIRMGWIPCIEFSVGEGFVYREHHHSPGYYDGRYWTMWKLPMYGCTDST 132 +E LL +++YL++ GW+PC+EF GFVYREHH SPGYYDGRYWTMWKLPM+GCTD+T Sbjct 80 SQEQLLSEVEYLLKNGWVPCLEFETERGFVYREHHSSPGYYDGRYWTMWKLPMFGCTDAT 139 Query 133 QVRAEVEANKKEYPDSFIRIIGFDNKRQVQCVSFIVHTPPSF 174 QV AEVE KK YP +++RIIGFDN RQVQC+SFI + P + Sbjct 140 QVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEGY 181 >Niben101Scf01991g05015.1 sp|P26573|RBS8_NICPL ***- Ribulose bisphosphate carboxylase small chain 8B, chloroplastic IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain) Length=181 Score = 220 bits (560), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 96/162 (59%), Positives = 125/162 (77%), Gaps = 3/162 (2%) Query 16 RASLASPFAGVKSPSAISLGRKLE---SGSRSSGFKVKCMQVWPPLGKKKFETLSYLPPL 72 +A++ +PF G+KS S+ + RK + S+G +V+CMQVWPP+ KK+ETLSYLP L Sbjct 20 QANMVAPFTGLKSASSFPVTRKQNLDITSIASNGGRVQCMQVWPPINMKKYETLSYLPDL 79 Query 73 PEEALLKQIDYLIRMGWIPCIEFSVGEGFVYREHHHSPGYYDGRYWTMWKLPMYGCTDST 132 +E LL +++YL++ GW+PC+EF GFVYREHH+SPGYYDGRYWTMWKLPM+GCTD+T Sbjct 80 SQEQLLSEVEYLLKNGWVPCLEFETERGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDAT 139 Query 133 QVRAEVEANKKEYPDSFIRIIGFDNKRQVQCVSFIVHTPPSF 174 QV AEVE KK YP +++RIIGFDN RQVQC+SFI P + Sbjct 140 QVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIASKPEGY 181 >Niben101Scf16221g01007.1 sp|P16031|RBS_LARLA ***- Ribulose bisphosphate carboxylase small chain, chloroplastic IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024681 (Ribulose bisphosphate carboxylase, small chain) Length=170 Score = 178 bits (452), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 84/171 (49%), Positives = 118/171 (69%), Gaps = 14/171 (8%) Query 10 AVTSVTRASLA-SPFAGVKSPSA--------ISLGRKLESGSRSSGFKVKCMQVWPPLGK 60 +V+S A +A S + G+KS + I+ RK + S+G K CM+ W P+ Sbjct 2 SVSSFVAAPIAGSTYLGLKSNNTNLFPAKDTITWSRK----TISNGSKTYCMKTWNPMDN 57 Query 61 KKFETLSYLPPLPEEALLKQIDYLIRMGWIPCIEFSVGEGFVYREHHHSPGYYDGRYWTM 120 KKFETLSYLPPL E+++ K++DY+I+ GWIPC+EF G+V RE+ PGYYDGRYWT+ Sbjct 58 KKFETLSYLPPLSEDSIAKEVDYMIQNGWIPCLEFD-QVGYVRRENSSMPGYYDGRYWTL 116 Query 121 WKLPMYGCTDSTQVRAEVEANKKEYPDSFIRIIGFDNKRQVQCVSFIVHTP 171 WKLPM+GC DS+QV E++ KK YP++FIR + FDN +QVQC++F++ P Sbjct 117 WKLPMFGCNDSSQVLNEIQECKKAYPNAFIRCLAFDNVKQVQCMAFLIQKP 167 >Niben101Scf01831g00001.1 sp|O64416|RBS_MARPA ***- Ribulose bisphosphate carboxylase small chain, chloroplastic IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024681 (Ribulose bisphosphate carboxylase, small chain) Length=204 Score = 164 bits (416), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 81/162 (50%), Positives = 110/162 (68%), Gaps = 14/162 (9%) Query 10 AVTSVTRASLA-SPFAGVKSPSA--------ISLGRKLESGSRSSGFKVKCMQVWPPLGK 60 +V+S A +A S + G+KS S I+ RK + S+G K CM+ W P+ Sbjct 2 SVSSFVAAPIAGSTYLGLKSNSTNLFPAKDTITWSRK----TISNGSKTYCMKTWNPIDN 57 Query 61 KKFETLSYLPPLPEEALLKQIDYLIRMGWIPCIEFSVGEGFVYREHHHSPGYYDGRYWTM 120 KKFETLSYLPPL E+++ K++DY+I+ GWIPC+EF GFV RE+ PG+YDGRYWT+ Sbjct 58 KKFETLSYLPPLSEDSIAKEVDYMIQKGWIPCLEFD-QVGFVRRENSSMPGFYDGRYWTL 116 Query 121 WKLPMYGCTDSTQVRAEVEANKKEYPDSFIRIIGFDNKRQVQ 162 WKLPM+GC DS+QV E++ KK YP+ FIR + FDN +Q+Q Sbjct 117 WKLPMFGCNDSSQVLNEIQECKKAYPNVFIRCLAFDNVKQIQ 158 >Niben101Scf01991g04010.1 sp|P26573|RBS8_NICPL ***- Ribulose bisphosphate carboxylase small chain 8B, chloroplastic IPR000894 (Ribulose bisphosphate carboxylase small chain, domain), IPR024680 (Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal), IPR024681 (Ribulose bisphosphate carboxylase, small chain) Length=137 Score = 162 bits (409), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 67/100 (67%), Positives = 81/100 (81%), Gaps = 0/100 (0%) Query 75 EALLKQIDYLIRMGWIPCIEFSVGEGFVYREHHHSPGYYDGRYWTMWKLPMYGCTDSTQV 134 E LL +++YL++ GW+PC+EF GFVYREHH SPGYYDGRYWTMWKLPM+GCTD+TQV Sbjct 38 EQLLSEVEYLLKNGWVPCLEFETERGFVYREHHSSPGYYDGRYWTMWKLPMFGCTDATQV 97 Query 135 RAEVEANKKEYPDSFIRIIGFDNKRQVQCVSFIVHTPPSF 174 AEVE KK YP +++RIIGFDN RQVQC+SFI P + Sbjct 98 LAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIASKPEGY 137 Lambda K H a alpha 0.320 0.135 0.424 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1075925106 Database: N.benthamiana Genome v1.0.1 predicted proteins Posted date: Mar 21, 2024 4:04 PM Number of letters in database: 18,711,326 Number of sequences in database: 57,140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40