BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome CDS (ITAG release 4.0) 34,075 sequences; 34,993,605 total letters Query= Untitled_sequence Length=1014 Score E Sequences producing significant alignments: (Bits) Value Solyc00g500184.1.1 1873 0.0 Solyc09g009360.1.1 922 0.0 Solyc10g052800.1.1 311 6e-84 Solyc12g036600.2.1 289 3e-77 Solyc07g042310.1.1 224 8e-58 Solyc09g031550.3.1 159 2e-38 Solyc09g031577.1.1 121 1e-26 Solyc06g064530.1.1 87.9 1e-16 >Solyc00g500184.1.1 Length=1014 Score = 1873 bits (1014), Expect = 0.0 Identities = 1014/1014 (100%), Gaps = 0/1014 (0%) Strand=Plus/Plus Query 1 ATGGCCCAAGAACACGCCCATTCTTCAGCCGTAGAGAGACTTTTGAATTGCGAGGTACCA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCCCAAGAACACGCCCATTCTTCAGCCGTAGAGAGACTTTTGAATTGCGAGGTACCA 60 Query 61 TTACGAGCTCAATATATACGAGTGTTATTCCGTGAAATAACTCGAATTTCAAATCATTCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTACGAGCTCAATATATACGAGTGTTATTCCGTGAAATAACTCGAATTTCAAATCATTCA 120 Query 121 CTTGCTTTAACTACTCATGCTATGGATGTAGGAGCATCAACTCCGTTCCTGTGGGCTTTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTTGCTTTAACTACTCATGCTATGGATGTAGGAGCATCAACTCCGTTCCTGTGGGCTTTT 180 Query 181 GAGGAGCGGGAGAAATTGTTGGAATTCTATGAAAGGGTCTCGGGAGCCAGGATGCATGCC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAGGAGCGGGAGAAATTGTTGGAATTCTATGAAAGGGTCTCGGGAGCCAGGATGCATGCC 240 Query 241 AGTTTCATACGACCAGGTGGAGTGGCACAAGATCTGCCTCTTGGCTTATGTATAGATATT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGTTTCATACGACCAGGTGGAGTGGCACAAGATCTGCCTCTTGGCTTATGTATAGATATT 300 Query 301 GATTCATTCACACAACAATTTGCTTCTCGTATCGACGAATTAGAAGAGATGTCAACCGGC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GATTCATTCACACAACAATTTGCTTCTCGTATCGACGAATTAGAAGAGATGTCAACCGGC 360 Query 361 AACCGTATCTGGAAACAACGATTAGTGGATATTGGTACTGTCACTGCACAGCAAGCAAAG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AACCGTATCTGGAAACAACGATTAGTGGATATTGGTACTGTCACTGCACAGCAAGCAAAG 420 Query 421 GATTGGGGATTCAGTGGTGTAATGTTAAGAGGTTCTGGGGTATGCTGGGATTTGCGAAAA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GATTGGGGATTCAGTGGTGTAATGTTAAGAGGTTCTGGGGTATGCTGGGATTTGCGAAAA 480 Query 481 GCAGCACCTTACGATGTTCATGACCAATTGGATCCTGACATACCAGTAGGTACCAGAGGA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GCAGCACCTTACGATGTTCATGACCAATTGGATCCTGACATACCAGTAGGTACCAGAGGA 540 Query 541 GATCGCTATGATCGTTACTGTATTCGTATCGAAGAGATGCGACAAAGTGTTCGGATCATT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GATCGCTATGATCGTTACTGTATTCGTATCGAAGAGATGCGACAAAGTGTTCGGATCATT 600 Query 601 GTGCAATGTCTTAATCAAATGCCTAGTGGCATGATCAAAGCCGATGATCGTAAGCTATGT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GTGCAATGTCTTAATCAAATGCCTAGTGGCATGATCAAAGCCGATGATCGTAAGCTATGT 660 Query 661 CCTCCATCACGATCTCGAATGAAACTATCCATGGAATCGAGTAAAGCATCCCGAGGTTGG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CCTCCATCACGATCTCGAATGAAACTATCCATGGAATCGAGTAAAGCATCCCGAGGTTGG 720 Query 721 CGCATCTCGTTGAGCGTGGAGAAGCATTGGGAACCCCAATTTTTTTCTTCGGAGCCGTTT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CGCATCTCGTTGAGCGTGGAGAAGCATTGGGAACCCCAATTTTTTTCTTCGGAGCCGTTT 780 Query 781 CTTTTTCCGTCCCCCCGCCCCGGCATAGCGCTTCGCTTCCGGTTCTTCGGAAGAATCAAC 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CTTTTTCCGTCCCCCCGCCCCGGCATAGCGCTTCGCTTCCGGTTCTTCGGAAGAATCAAC 840 Query 841 TTACGTCTCCCTTCTTCATTGATTTGGGGGAAAGGGAACCGTCTACCAGTTGGGAAGCTA 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 TTACGTCTCCCTTCTTCATTGATTTGGGGGAAAGGGAACCGTCTACCAGTTGGGAAGCTA 900 Query 901 GACATCAAGCGGACGCGCGGTAGCGTTCGTGGTGGTGCTTCAGGATTCCAATGTACTGCG 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GACATCAAGCGGACGCGCGGTAGCGTTCGTGGTGGTGCTTCAGGATTCCAATGTACTGCG 960 Query 961 TCCAAGATCAGAACGAGCTTGCCGGCGGACCACTGCCGTCCCATTCTTGAGTGA 1014 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TCCAAGATCAGAACGAGCTTGCCGGCGGACCACTGCCGTCCCATTCTTGAGTGA 1014 >Solyc09g009360.1.1 Length=543 Score = 922 bits (499), Expect = 0.0 Identities = 513/520 (99%), Gaps = 0/520 (0%) Strand=Plus/Plus Query 1 ATGGCCCAAGAACACGCCCATTCTTCAGCCGTAGAGAGACTTTTGAATTGCGAGGTACCA 60 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| Sbjct 1 ATGGCCCAAGAACACGCTCATTCTTCAACCGTAGAGAGACTTTTGAATTGCGAGGTTCCA 60 Query 61 TTACGAGCTCAATATATACGAGTGTTATTCCGTGAAATAACTCGAATTTCAAATCATTCA 120 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 TTACGAGCTCAATATATACGAGTGTTATTCCGTGAAATAACTCAAATTTCAAATCATTCA 120 Query 121 CTTGCTTTAACTACTCATGCTATGGATGTAGGAGCATCAACTCCGTTCCTGTGGGCTTTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTTGCTTTAACTACTCATGCTATGGATGTAGGAGCATCAACTCCGTTCCTGTGGGCTTTT 180 Query 181 GAGGAGCGGGAGAAATTGTTGGAATTCTATGAAAGGGTCTCGGGAGCCAGGATGCATGCC 240 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 181 GAGGAGCGGGAGAAATTGTTGGAATTCTATGAAAGGGTCTCGGGAGCTGGGATGCATGCC 240 Query 241 AGTTTCATACGACCAGGTGGAGTGGCACAAGATCTGCCTCTTGGCTTATGTATAGATATT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AGTTTCATACGACCAGGTGGAGTGGCACAAGATCTGCCTCTTGGCTTATGTATAGATATT 300 Query 301 GATTCATTCACACAACAATTTGCTTCTCGTATCGACGAATTAGAAGAGATGTCAACCGGC 360 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GATTCATTCACACGACAATTTGCTTCTCGTATCGACGAATTAGAAGAGATGTCAACCGGC 360 Query 361 AACCGTATCTGGAAACAACGATTAGTGGATATTGGTACTGTCACTGCACAGCAAGCAAAG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AACCGTATCTGGAAACAACGATTAGTGGATATTGGTACTGTCACTGCACAGCAAGCAAAG 420 Query 421 GATTGGGGATTCAGTGGTGTAATGTTAAGAGGTTCTGGGGTATGCTGGGATTTGCGAAAA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GATTGGGGATTCAGTGGTGTAATGTTAAGAGGTTCTGGGGTATGCTGGGATTTGCGAAAA 480 Query 481 GCAGCACCTTACGATGTTCATGACCAATTGGATCCTGACA 520 |||||||||||||||||||||||||||||||||||||||| Sbjct 481 GCAGCACCTTACGATGTTCATGACCAATTGGATCCTGACA 520 >Solyc10g052800.1.1 Length=315 Score = 311 bits (168), Expect = 6e-84 Identities = 231/262 (88%), Gaps = 1/262 (0%) Strand=Plus/Plus Query 149 TAGGAGCATCAACTCCGTTCCTGTGGGCTTTTGAGGAGCGGGAGAAATTGTTGGAATTCT 208 || ||||||||| ||||||| |||||| |||||||||| ||||||||||||||||||||| Sbjct 51 TAAGAGCATCAA-TCCGTTCTTGTGGGATTTTGAGGAGTGGGAGAAATTGTTGGAATTCT 109 Query 209 ATGAAAGGGTCTCGGGAGCCAGGATGCATGCCAGTTTCATACGACCAGGTGGAGTGGCAC 268 || ||||||||| |||||| ||||||||||||||| ||| || |||||||||||| || Sbjct 110 ATAAAAGGGTCTTGGGAGCTGGGATGCATGCCAGTTATATAGGATCAGGTGGAGTGGAAC 169 Query 269 AAGATCTGCCTCTTGGCTTATGTATAGATATTGATTCATTCACACAACAATTTGCTTCTC 328 |||| || ||||||||| | |||| |||||||||||||||||||| ||||| ||| || Sbjct 170 AAGAACTTTTTCTTGGCTTGTTTATATATATTGATTCATTCACACAAGAATTTTCTTTTC 229 Query 329 GTATCGACGAATTAGAAGAGATGTCAACCGGCAACCGTATCTGGAAACAACGATTAGTGG 388 |||| |||||||||||| ||||||||| |||||||||||||| |||||||| |||||| | Sbjct 230 GTATTGACGAATTAGAACAGATGTCAATCGGCAACCGTATCTTGAAACAACAATTAGTCG 289 Query 389 ATATTGGTACTGTCACTGCACA 410 |||||||||| ||||||||||| Sbjct 290 ATATTGGTACCGTCACTGCACA 311 >Solyc12g036600.2.1 Length=840 Score = 289 bits (156), Expect = 3e-77 Identities = 213/238 (89%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 1 ATGGCCCAAGAACACGCCCATTCTTCAGCCGTAGAGAGACTTTTGAATTGCGAGGTACCA 60 ||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 74 ATGGCCCAAGAACACGCCCCTTCTTCAGCTGTAGAGAGACTTTTGAATTG---------- 123 Query 61 TTACGAGCTCAATATATACGAGTGTTATTCCGTGAAATAACTCGAATTTCAAATCATTCA 120 |||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| Sbjct 124 ---CGAGCTCAATATATACGAGTGTTATTCCGTGAAATAACTCAAATTTCATATCGTTCT 180 Query 121 CTTGCTTTAACTACTCATGCTATGGATGTAGGAGCATCAACTCCGTTCCTGTGGGCTTTT 180 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 181 CTTGCTTTAACTGCTCATGCTATGGATCTAGGAGCATCAACTCCGTTCCTGTGGGCTTTT 240 Query 181 GAGGAGCGGGAGAAATTGTTGGAATTCTATGAAAGGGTCTCGGGAGCCAGGATGCATG 238 |||||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||| Sbjct 241 GAGGAGAGGGAGAAATTGCTAGAATTCTATGAAAGGGTCTCGAGAGCCAGGATGCATG 298 Score = 289 bits (156), Expect = 3e-77 Identities = 185/198 (93%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 452 GTTCTGGGGTATGCTGGGATTTGCGAAAAGCAGCACCTTACGATGTTCATGACCAATTGG 511 ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| Sbjct 298 GTTCTGGGGTATGCTGGAATTTGCGAAAAGCA-----TTACGATGTTCATTACCAATTGG 352 Query 512 ATCCTGACATACCAGTAGGTACCAGAGGAGATCGCTATGATCGTTACTGTATTCGTATCG 571 |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 353 ATCCTGACATACCAGTAGGTACCAGACGAGATCTCTATGATCGTTACTGTATTCGTATCG 412 Query 572 AAGAGATGCGACAAAGTGTTCGGATCATTGTGCAATGTCTTAATCAAATGCCTAGTGGCA 631 ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 413 AAGAGATTCGACAAAGTGTTCGGATCATTGTGCAATGTATTAATCAAATGCCTAGTTGCA 472 Query 632 TGATCAAAGCCGATGATC 649 ||||||| |||||||||| Sbjct 473 TGATCAACGCCGATGATC 490 Score = 200 bits (108), Expect = 1e-50 Identities = 126/135 (93%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 775 CCGTTTCTTTTTCCGTCCCCCCGCCCCGGCATAGCGCTTCGCTTCCGGTTCTTCGGAAGA 834 || |||||||||| |||||| |||||||| |||||||||||||||||||||||| ||||| Sbjct 491 CCATTTCTTTTTCGGTCCCCTCGCCCCGGGATAGCGCTTCGCTTCCGGTTCTTCAGAAGA 550 Query 835 ATCAACTTACGTCTCCCTTCTTCATTGATTTGGGGGAAAGGGAACCGTCTACCAGTTGGG 894 ||||||| ||||||||||||||||| |||||| |||||||||||| |||||||||||||| Sbjct 551 ATCAACTAACGTCTCCCTTCTTCATCGATTTGAGGGAAAGGGAACTGTCTACCAGTTGGG 610 Query 895 AAGCTAGACATCAAG 909 ||||||||||||||| Sbjct 611 AAGCTAGACATCAAG 625 Score = 150 bits (81), Expect = 1e-35 Identities = 100/109 (92%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 906 CAAGCGGACGCGCGGTAGCGTTCGTGGTGGTGCTTCAGGATTCCAATGTACTGCGTCCAA 965 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 705 CAAGCGGACGCGCAGTAGCGTTCGTGGTGGTGCTTCAGGATTCCAATGTACTACGTCCGA 764 Query 966 GATCAGAACGAGCTTGCCGGCGGACCACTGCCGTCCCATTCTTGAGTGA 1014 ||| |||| |||||||||| | |||||||||||||||||| |||| ||| Sbjct 765 GATGAGAATGAGCTTGCCGACAGACCACTGCCGTCCCATTTTTGA-TGA 812 >Solyc07g042310.1.1 Length=189 Score = 224 bits (121), Expect = 8e-58 Identities = 147/160 (92%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 156 ATCAACTCCGTTCCTGTGGGCTTTTGAGGAGCGGGAGAAATTGTTGGAATTCTATGAAAG 215 ||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 27 ATCAATTTCATTCCTGTGGGCTTTTGAGGAGCGGAAGAAATTGTTGGAATTCTATGAAGG 86 Query 216 GGTCTCGGGAGCCAGGATGCATGCCAGTTTCATACGACCAGGTGGAGTGGCACAAGATCT 275 |||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||| Sbjct 87 AGTCTCGGGAGACAGAATGCATGTTAGTTTCATACGACCAGGTGGAGTATCACAAGATCT 146 Query 276 GCCTCTTGGCTTATGTATAGATATTGATTCATTCACACAA 315 |||||||||||||||||||||||||||||||| ||||||| Sbjct 147 GCCTCTTGGCTTATGTATAGATATTGATTCATCCACACAA 186 >Solyc09g031550.3.1 Length=231 Score = 159 bits (86), Expect = 2e-38 Identities = 116/131 (89%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 452 GTTCTGGGGTATGCTGGGATTTGCGAAAAGCAGCACCTTACGATGTTCATGACCAATTGG 511 ||||| |||||||||||||||||| |||||||| ||||||||||||||||| ||||||| Sbjct 98 GTTCTTGGGTATGCTGGGATTTGCAAAAAGCAGGACCTTACGATGTTCATGGACAATTGG 157 Query 512 ATCCTGACATACCAGTAGGTACCAGAGGAGATCGCTATGATCGTTACTGTATTCGTATCG 571 ||| ||||||||||||||||| ||| |||||||||||||| |||||| | || || || Sbjct 158 ATCTGGACATACCAGTAGGTACAAGAAGAGATCGCTATGATGGTTACTATGTTTGTGTCA 217 Query 572 AAGAGATGCGA 582 ||||||||||| Sbjct 218 AAGAGATGCGA 228 Score = 95.3 bits (51), Expect = 7e-19 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 208 TATGAAAGGGTCTCGGGAGCCAGGATGCATGCCAGTTTCATACGACCAGGTGGAGTGGCA 267 |||||||||||||||| || ||||| ||||| |||||||||||| ||||| |||| ||| Sbjct 16 TATGAAAGGGTCTCGGTAGTTAGGATACATGCTAGTTTCATACGAACAGGTAGAGTTGCA 75 Query 268 CAAGATCTGCCTCTTGGCTTATGT 291 ||||||| ||||||| || ||||| Sbjct 76 CAAGATCAGCCTCTTAGCATATGT 99 >Solyc09g031577.1.1 Length=378 Score = 121 bits (65), Expect = 1e-26 Identities = 75/80 (94%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 619 ATGCCTAGTGGCATGATCAAAGCCGATGATCGTAAGCTATGTCCTCCATCACGATCTCGA 678 ||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 1 ATGCCTACTGGAATGATCAAAGCCGATGATCTTAAGATATGTCCTCCATCACGATCTCGA 60 Query 679 ATGAAACTATCCATGGAATC 698 |||||||||||||| ||||| Sbjct 61 ATGAAACTATCCATAGAATC 80 >Solyc06g064530.1.1 Length=168 Score = 87.9 bits (47), Expect = 1e-16 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 805 ATAGCGCTTCGCTTCCGGTTCTTCGGAAGAATCAACTTACGTCTCCCTTCTTCATT 860 ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 83 ATAGCGCTTAGCTTTCTGTTCTTCGGAAGAATCAACTTACGTCTCCCTTCTTCATT 28 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33766170970 Database: Tomato Genome CDS (ITAG release 4.0) Posted date: Mar 21, 2024 4:17 PM Number of letters in database: 34,993,605 Number of sequences in database: 34,075 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5