BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: ITAG_release_2.40_cds 34,725 sequences; 35,971,085 total letters Query= Untitled_sequence Length=468 Score E Sequences producing significant alignments: (Bits) Value Solyc01g098070.1MADS-box family protein (AHRD V1 *-*- D7LH07_ARAL... 865 0.0 Solyc01g098060.1MADS-box transcription factor 47 (AHRD V1 **** B4... 368 2e-101 Solyc03g062820.1MADS-box transcription factor 15 (AHRD V1 *-*- D3... 180 9e-45 Solyc01g098050.1MADS-box transcription factor 56 (AHRD V1 *-*- MA... 158 4e-38 Solyc01g066730.2MADS-box protein (AHRD V1 *-*- D7KFE1_ARALY); con... 97.1 9e-20 >Solyc01g098070.1 MADS-box family protein (AHRD V1 *-*- D7LH07_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=468 Score = 865 bits (468), Expect = 0.0 Identities = 468/468 (100%), Gaps = 0/468 (0%) Strand=Plus/Plus Query 1 ATGGGAACAGGAAAGAAGAAAATAGAGATTGAGAAAATCACAAAGCAAACTGCTAGAATG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAACAGGAAAGAAGAAAATAGAGATTGAGAAAATCACAAAGCAAACTGCTAGAATG 60 Query 61 GTGGCATTTTCGAAAAGAAGGAAAGGACTTTTCAGAAAAGCTGAAGAACTTGAGTCCATG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTGGCATTTTCGAAAAGAAGGAAAGGACTTTTCAGAAAAGCTGAAGAACTTGAGTCCATG 120 Query 121 TCAAGTTCTCGTGTTACCTCTGTTGTTATTTCACCTTTTGGCAAGCCTTATACTTATGGA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCAAGTTCTCGTGTTACCTCTGTTGTTATTTCACCTTTTGGCAAGCCTTATACTTATGGA 180 Query 181 AATGTTAACTCTGTTATAAAGAAGTATTTTTCCATCTGTATCCGCCCAGAAATATCAACA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AATGTTAACTCTGTTATAAAGAAGTATTTTTCCATCTGTATCCGCCCAGAAATATCAACA 240 Query 241 CCAGTGATGAATTCTCATCCTTCCTCTTCTAATGTTTCTGGTGAATCTTTGGGGTCAAAA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CCAGTGATGAATTCTCATCCTTCCTCTTCTAATGTTTCTGGTGAATCTTTGGGGTCAAAA 300 Query 301 TCTTCATCGACCCCAAATGGAAATGCTCTCTGCAATTGGGTGGAAGGTATAGATGTCGAA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCTTCATCGACCCCAAATGGAAATGCTCTCTGCAATTGGGTGGAAGGTATAGATGTCGAA 360 Query 361 GAATGTCAAAATCTGAACCAACTGTTAATGTTGAAGAAGCAATTGGAAGGAACTAGAGAG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GAATGTCAAAATCTGAACCAACTGTTAATGTTGAAGAAGCAATTGGAAGGAACTAGAGAG 420 Query 421 AAGATTGTTTCCAAAGAATCTGAATCATTTCAAGCTTTGTTTATTTAG 468 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AAGATTGTTTCCAAAGAATCTGAATCATTTCAAGCTTTGTTTATTTAG 468 >Solyc01g098060.1 MADS-box transcription factor 47 (AHRD V1 **** B4FG10_MAIZE); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=459 Score = 368 bits (199), Expect = 2e-101 Identities = 381/469 (81%), Gaps = 11/469 (2%) Strand=Plus/Plus Query 1 ATGGGAACAGGAAAGAAGAAAATAGAGATTGAGAAAATCACAAAGCAAACTGCTAGAATG 60 ||||||||| | |||| || | ||| || |||||| |||||||||||| || |||| || Sbjct 1 ATGGGAACAAGGAAGAGGAGGACAGAAATCGAGAAACTCACAAAGCAAAGTGATAGATTG 60 Query 61 GTGGCATTTTCGAAAAGAAGGAAAGGACTTTTCAGAAAAGCTGAAGAACTTGAGTCCATG 120 | ||||||| ||||||| ||||||| |||| | |||||||||| |||||| ||| || Sbjct 61 ACGACATTTTCAAAAAGAAAGAAAGGAATTTTTAAAAAAGCTGAACTACTTGAATCCTTG 120 Query 121 TCAAGTTCTCGTGTTACCTCTGTTGTTATTTCACCTTTTGGCAAGCCTTATACTTATGGA 180 ||||||||||||||||||| |||||| ||||||||| ||||| ||||||||||| ||| Sbjct 121 ACAAGTTCTCGTGTTACCTCCGTTGTTTTTTCACCTTCTGGCATTCCTTATACTTACGGA 180 Query 181 AATGTTAACTCTGTTATAAAGAAGTATTTTTCCATCTGTATCCGCCCAGAAATATCAACA 240 ||||||||||||||||| || ||| ||||| | | ||||| || |||||||||||||| Sbjct 181 AATGTTAACTCTGTTATCAAAAAGCATTTTCCTAGCTGTAATCGATCAGAAATATCAACA 240 Query 241 CCAGTGATGAATTCTCATCCTTCCTCTTCTAATGTTTCTGGTGAATCTTTGGGGTCAAAA 300 | || ||||||||||||| | |||||||||| ||||||| |||||||||| Sbjct 241 ACGGTAATGAATTCTCATCATG---------ATGTTTCTGGCGAATCTTCGGGGTCAAAA 291 Query 301 TCTTCATCGACCCCAAATGGA-AATGCTCTCTGCAATTGGGTGGAAGGTATAGATGTCGA 359 || | ||||| |||||| ||| |||| |||| | ||||||||| | ||||||||| || Sbjct 292 TCATTATCGATCCCAAA-GGAGAATGGTCTCCGTCGTTGGGTGGAGGATATAGATGTGGA 350 Query 360 AGAATGTCAAAATCTGAACCAACTGTTAATGTTGAAGAAGCAATTGGAAGGAACTAGAGA 419 || ||||||||| | || |||||||| ||||||||| ||||||| |||||||| ||||| Sbjct 351 AGGGTGTCAAAATTTAAATCAACTGTTTATGTTGAAGGAGCAATTAGAAGGAACCAGAGA 410 Query 420 GAAGATTGTTTCCAAAGAATCTGAATCATTTCAAGCTTTGTTTATTTAG 468 ||| ||| |||||| || |||| |||||| ||||||||||||| ||| Sbjct 411 GAAAATTATTTCCAGTGATCCTGAGTCATTTGAAGCTTTGTTTATGTAG 459 >Solyc03g062820.1 MADS-box transcription factor 15 (AHRD V1 *-*- D3U2H5_ORYSA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=438 Score = 180 bits (97), Expect = 9e-45 Identities = 176/215 (82%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 1 ATGGGAACAGGAAAGAAGAAAATAGAGATTGAGAAAATCACAAAGCAAACTGCTAGAATG 60 ||||| ||||||||||||||||||||||| |||||||| |||||| ||| | ||||||| Sbjct 1 ATGGGCACAGGAAAGAAGAAAATAGAGATGGAGAAAATTACAAAGAAAAGTTGTAGAATG 60 Query 61 GTGGCATTTTCGAAAAGAAGGAAAGGACTTTTCA-GAAAAGCTGAAGAACTTGAGTCCAT 119 ||| |||| || ||||||||||| |||||||||| ||||| |||||||||||| ||| | Sbjct 61 GTGACATTCTCCAAAAGAAGGAACGGACTTTTCAAGAAAAA-TGAAGAACTTGAATCCTT 119 Query 120 GTCAAGTTCTCGTGTTACCTCTGTTGTTATTTCACCTTTTGGCAAGCCTTATACTTATGG 179 | | |||||| ||| ||||||||||| ||||||| ||| | | ||||||||| || Sbjct 120 GACGGGTTCTCAAGTTTCCTCTGTTGTTCTTTCACCCGCTGGAAGGATTTATACTTACGG 179 Query 180 AAATGTTAACTCTGTTATAAAGAAGTATTTTTCCA 214 | | |||||| ||| ||| || | | ||||||||| Sbjct 180 AGACGTTAACACTGCTATCAACATGCATTTTTCCA 214 Score = 128 bits (69), Expect = 3e-29 Identities = 115/137 (84%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 335 ATTGGGTGGAAGGTATAGATGTCGAAGAATGTCAAAATCTGAACCAACTGTTAATGTTGA 394 ||||| |||| | ||||||||| ||| | ||||||||| |||| ||||| ||| |||||| Sbjct 302 ATTGGCTGGAGGATATAGATGTTGAACAGTGTCAAAATTTGAATCAACTTTTATTGTTGA 361 Query 395 AGAAGCAATTGGAAGGAACTAGAGAGAAGATTGTTTCCA---AAGAATCTGAATCATTTC 451 || |||||||||||||||||| | | ||||||||||||| |||| ||| | || |||| Sbjct 362 AGGAGCAATTGGAAGGAACTAAAAAAAAGATTGTTTCCATTGAAGATTCTAAGTCCTTTC 421 Query 452 AAGCTTTGTTTATTTAG 468 ||||||||||||| ||| Sbjct 422 AAGCTTTGTTTATGTAG 438 >Solyc01g098050.1 MADS-box transcription factor 56 (AHRD V1 *-*- MAD56_ORYSI); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=483 Score = 158 bits (85), Expect = 4e-38 Identities = 357/485 (74%), Gaps = 31/485 (6%) Strand=Plus/Plus Query 1 ATGGGAACAGGAAAGAAGAAAATAGAGATTGAGAAAATCACAAAGCAAACTGCTAGAATG 60 ||||| ||||| ||||||||||||||||| |||||||| | |||| ||||| |||||||| Sbjct 1 ATGGGCACAGGGAAGAAGAAAATAGAGATCGAGAAAATTATAAAGGAAACTTCTAGAATG 60 Query 61 GTGGCATTTTCGAAAAGAAGGAAAGGACTTTTCAGAAAAGCTGAAGAACTTGAGTCCATG 120 || |||| ||||||||| | ||||| ||||||| ||||||| || || |||| |||||| Sbjct 61 GTTACATTCTCGAAAAGACGAAAAGGGCTTTTCAAAAAAGCTAAACAATTTGAATCCATG 120 Query 121 TCAAGTTCTCGTGTTACCTCTGTTGTTATT-TCACCTTTTGGCAAGCCTTATACTTATGG 179 | ||||||||||| | || |||| ||| ||||| || | ||| ||||||| ||| Sbjct 121 ACGGGTTCTCGTGTTGCTTCAATTGT-ATTGTCACCCACAGGAAGGCCATATACTTGTGG 179 Query 180 AAATGTTAACTCTGTTATAAAGAAGT-ATTTTTCCA-TC-TGTATCCGCCCA-GAAAT-A 234 | | ||| | | || ||||| ||| ||||||| | | || || | ||||| | Sbjct 180 AGACGTTGATTATGCTATAA-GAACACATTTTTCTAATAGTGG-TCGATGTATGAAATTA 237 Query 235 TCAACACCAG---TGATGAATTCTCA---TCCT--TCCTC-TTCTAATGTT-TC-----T 279 | || | ||| | ||||||||||| | || | || ||| |||||| | | Sbjct 238 TTAATAACAGACATCATGAATTCTCACGATTCTAATTCTAGTTCCAATGTTGTTGTTTAT 297 Query 280 GGTGAATCTTTGGGGTCAAAATCTTCATCGACCCCAAATGGA-AATGCTCTCTGCAATTG 338 || ||| ||| | | || |||| || ||| | ||||| | | ||| |||| |||||| Sbjct 298 GGCGAAACTTCGAGATCGAAATTCTCTTCGGCTCCAAA-GAAGAATAGTCTCCACAATTG 356 Query 339 GGTGGAAG-GTATAGATGTCGAAGAATGTCAAAATCTGAACCAACTGTTAATGTTGAAGA 397 |||| ||| |||||||||| ||| ||||||||||| |||| || ||||||||||| Sbjct 357 GGTG-AAGCGTATAGATGTTGAACAATGTCAAAATTTGAATTGGCTCTTAATGTTGAAAC 415 Query 398 AGCAATTGGAAGGAACTAGAGAGAAGATTGTTTCCAAAGAATCTGAATCATTTCAAGCTT 457 | ||||||||||| || | ||| ||||||| | || || ||| |||||| |||||| Sbjct 416 AACAATTGGAAGGGACAAAAGAAAAGATTGGTG--AA-GACGTTGAGTCATTTAAAGCTT 472 Query 458 TGTTT 462 | ||| Sbjct 473 TTTTT 477 >Solyc01g066730.2 MADS-box protein (AHRD V1 *-*- D7KFE1_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box Length=903 Score = 97.1 bits (52), Expect = 9e-20 Identities = 97/119 (82%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 1 ATGGGAACAGGAAAGAAGAAAATAGAGATTGAGAAAATCAC-AAAGCAAACTGCTAGAAT 59 ||||| | ||| ||| ||||||| || ||| |||||||||| |||| || | || |||| Sbjct 1 ATGGGTAAAGGGAAGCAGAAAATTGAAATTAAGAAAATCACTAAAG-AATCAGCAAGAAA 59 Query 60 GGTGGCATTTTCGAAAAGAAGGAAAGGACTTTTCAGAAAAGCTGAAGAACTTGAGTCCA 118 ||||||||||||||| ||| | ||||||||||||| ||||||| ||||||| |||| Sbjct 60 GGTGGCATTTTCGAAGAGACGCAAAGGACTTTTCAAGAAAGCTGTGCAACTTGAATCCA 118 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15601132140 Database: ITAG_release_2.40_cds Posted date: Jun 25, 2024 1:42 PM Number of letters in database: 35,971,085 Number of sequences in database: 34,725 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5