BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome CDS (ITAG release 4.0)
           34,075 sequences; 34,993,605 total letters



Query= Untitled_sequence

Length=1041
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc08g006540.4.1                                                    1339    0.0  
Solyc04g054520.3.1                                                    71.3    1e-11


>Solyc08g006540.4.1 
Length=792

 Score = 1339 bits (725),  Expect = 0.0
 Identities = 727/728 (99%), Gaps = 0/728 (0%)
 Strand=Plus/Plus

Query  107  GTCCATTGTCTTTCTTATCTGTTCTAAAAATTCTCTGTTTGGTGGAAATGAATTCCATTC  166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  65   GTCCATTGTCTTTCTTATCTGTTCTAAAAATTCTCTGTTTGGTGGAAATGAATTCCATTC  124

Query  167  CTTTCTCCATTGTTACATACATACCTTCAAAGCAGCCATTGTTACACTGTACCAAAACTT  226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  125  CTTTCTCCATTGTTACATACATACCTTCAAAGCAGCCATTGTTACACTGTACCAAAACTT  184

Query  227  CCCAAACAACAACAGATCCAATTCCACATTTTATCAAATCCTCAATGCTCTCGTCTTCTT  286
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  185  CCCAAACAACAACAGATCCAATTCCACATTTTATCAAATCCTCAATACTCTCGTCTTCTT  244

Query  287  CGAAATCTGTGAATAAACTCGCAGAAAAAATTAGTCCATTGCCTTCTTCGTTCAGTAGAA  346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  245  CGAAATCTGTGAATAAACTCGCAGAAAAAATTAGTCCATTGCCTTCTTCGTTCAGTAGAA  304

Query  347  GAGAAACCCTAAGTGCTTGCGGTTTGGGTTTTTCGGCGGTTTTGTTCGAGGCTCTTTTGC  406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  305  GAGAAACCCTAAGTGCTTGCGGTTTGGGTTTTTCGGCGGTTTTGTTCGAGGCTCTTTTGC  364

Query  407  AGCCACAGTCGAATATTGAAGCAATTGCTGAAGAAGCTGCAGCTACGGAATGTGAGTTCA  466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  365  AGCCACAGTCGAATATTGAAGCAATTGCTGAAGAAGCTGCAGCTACGGAATGTGAGTTCA  424

Query  467  CAGTTACACCTTCAGGTCTTGCTTATTGTGATAAAGCTGTAGGTTATGGACCTGAAGCTG  526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  425  CAGTTACACCTTCAGGTCTTGCTTATTGTGATAAAGCTGTAGGTTATGGACCTGAAGCTG  484

Query  527  TTAAAGGACAATTGATCAAGGCACATTATGTAGGTAAACTGGAAAATGGGAAGGTCTTCG  586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  485  TTAAAGGACAATTGATCAAGGCACATTATGTAGGTAAACTGGAAAATGGGAAGGTCTTCG  544

Query  587  ATAGCAGCTATAATCGTGGAAAGCCTCTTACATTTCGCGTTGGTGTTGGCGAGGTTATTA  646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  545  ATAGCAGCTATAATCGTGGAAAGCCTCTTACATTTCGCGTTGGTGTTGGCGAGGTTATTA  604

Query  647  AAGGTTGGGATCAGGGAATTCTAGGAGGTGATGGTTTTCCTCCAATGCTAACTGGAGGAA  706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  605  AAGGTTGGGATCAGGGAATTCTAGGAGGTGATGGTTTTCCTCCAATGCTAACTGGAGGAA  664

Query  707  AGCGTAAACTGAAGATTCCTCCAGAACTTGGATATGGGATAAGAGGAGCTGGCTGCAGAG  766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  665  AGCGTAAACTGAAGATTCCTCCAGAACTTGGATATGGGATAAGAGGAGCTGGCTGCAGAG  724

Query  767  GAGGTACGTGCATTATTCCTCCAGACTCAGTTCTACTGTTCGATGTGGAGTTCGTTGGCA  826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  725  GAGGTACGTGCATTATTCCTCCAGACTCAGTTCTACTGTTCGATGTGGAGTTCGTTGGCA  784

Query  827  AGGCGTAG  834
            ||||||||
Sbjct  785  AGGCGTAG  792


>Solyc04g054520.3.1 
Length=630

 Score = 71.3 bits (38),  Expect = 1e-11
 Identities = 124/166 (75%), Gaps = 4/166 (2%)
 Strand=Plus/Plus

Query  580  GTCTTCGATAGCAGCTATAATCGTGGAA-AGCCTCTTACATTTCGCGTTGGTGTTGGCGA  638
            || || || ||||||||||| |||||   |||| |||||  | ||| | ||  | ||| |
Sbjct  358  GTTTTTGACAGCAGCTATAAACGTGGTCGAGCC-CTTACCATGCGCCTCGGCATGGGCAA  416

Query  639  GGTTATTAAAGGTTGGGATCAGGGAATTCTAGGAGGTGATGGTTTTCCTCCAATGCTAAC  698
            ||| || || || |  |||||||||||  | |||||||| ||  | || |||||||||  
Sbjct  417  GGTGATCAAGGGATTAGATCAGGGAATCTTGGGAGGTGAAGGGGTACCACCAATGCTAGT  476

Query  699  TGGAGGAAAGCGTAAACTGAAGATTCCTCCAGAACTTGG-ATATGG  743
            ||| ||||| ||||| ||  ||||||||||| |  |||| ||||||
Sbjct  477  TGGTGGAAAACGTAAGCTTCAGATTCCTCCACAT-TTGGCATATGG  521



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 34687997680


  Database: Tomato Genome CDS (ITAG release 4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 34,993,605
  Number of sequences in database:  34,075



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5