BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome CDS (ITAG release 4.0)
           34,075 sequences; 34,993,605 total letters



Query= Untitled_sequence

Length=2118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc11g045250.1.1                                                    187     2e-46


>Solyc11g045250.1.1 
Length=1764

 Score = 187 bits (101),  Expect = 2e-46
 Identities = 439/605 (73%), Gaps = 12/605 (2%)
 Strand=Plus/Plus

Query  1057  CTTGGGAACCATAGAGATGCATGGACATATGGAGCTGTTGATCCAAACAGTGGAACTTCT  1116
             ||||| |||||||||||||||||||| |||||||| ||||| || || ||||||||  ||
Sbjct  991   CTTGGAAACCATAGAGATGCATGGACTTATGGAGCAGTTGACCCCAATAGTGGAACCGCT  1050

Query  1117  GCTTTACTTGACATTAGTCGACGATTTGCTCTTTTGCTTAAATCT-GGTTGGAGACCACG  1175
             ||  | |||||||||  |||  ||| ||||||| | | |   | | |||||||  || ||
Sbjct  1051  GCCCTGCTTGACATTGCTCGTAGATATGCTCTTCT-CATGCGTTTGGGTTGGAATCCTCG  1109

Query  1176  TAGGACCATTCTCCTTTGTAGTTGGGATGCAGAAGAATTTGGAATGATTGGATCAACTGA  1235
              || || ||  | || || ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct  1110  GAGAACAATCATTCTCTGCAGTTGGGATGCGGAAGAGTTTGGGATGATTGGATCAACTGA  1169

Query  1236  ATGGATTGAAGAAAATGTTCTTAACTTAGGTGC-AAGTGCTGTTGCTTATCTTAATGTAG  1294
             |||| ||||  | ||| || | ||| | ||  | || | |||| || ||||| ||||| |
Sbjct  1170  ATGGGTTGAGCAGAATCTTATCAACCTTGGATCTAAAT-CTGTGGCCTATCTAAATGTGG  1228

Query  1295  ATTGTGCAGTCCAAGGCTCTGGTTTTTTTGCTGGTGCAACTCCTCAATTAGACGGTCTTC  1354
             |||||||||| |||||| |||| |||||| |  || | |||||||| || |||  ||| |
Sbjct  1229  ATTGTGCAGTTCAAGGCCCTGGGTTTTTTCCCAGTACGACTCCTCAGTTTGACAATCTGC  1288

Query  1355  TTGTCGATGTCTTGAAGCTGGTACAGGATCCTGATGCAGTAGGCTTGACAGTGGAAGAGA  1414
             ||   ||  ||   |||  | |  | ||||| ||  |||  ||| ||||  |  | || |
Sbjct  1289  TTACTGAAATCACCAAGAAGATTAATGATCCAGACTCAGAGGGCATGACTCTTTATGAAA  1348

Query  1415  CATTTA-AG-T-CTCAAA-A--TAACATTATTCAGAGGCTAAGTAGAGTAGATTCTGATT  1468
              ||  | || | || | | |  || ||  |||||  |||| ||| |||||||||| || |
Sbjct  1349  GATGGACAGCTGCTGATAGAGGTATCAAGATTCAACGGCTTAGTGGAGTAGATTCAGACT  1408

Query  1469  TTTCCGGTTTTCTTCATCATGCCGGGATACCGTCTATAGACATGTACTATGG-AGCAGAT  1527
             || ||   ||| | || ||||| ||  | || ||| | ||  |||||||||| || ||||
Sbjct  1409  TTGCCCCATTTTTGCACCATGCAGGTGTTCCTTCTGTTGATTTGTACTATGGCAG-AGAT  1467

Query  1528  TATCCTGTCTATCACACTGCATTTGACTCCTATGATTGGATGATCCACAACGCAGATCCA  1587
             | ||| || ||||| || |||||||| |||||  | |||||| |  ||   |  ||||||
Sbjct  1468  TTTCCAGTATATCATACAGCATTTGATTCCTACAACTGGATGGTAAACTTTGGGGATCCA  1527

Query  1588  TTGTTTCACCGTCATGTTGCTATGGCTGGAATTTGGGGACTTTTAGGAATTCTCTTGGCT  1647
             || ||||| || ||||| ||  || | ||| | ||||||||| | | | ||| | |||||
Sbjct  1528  TTCTTTCAGCGGCATGTGGCAGTGACAGGAGTGTGGGGACTTCTTGCACTTCGCCTGGCT  1587

Query  1648  GATGA  1652
             |||||
Sbjct  1588  GATGA  1592



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 71353214260


  Database: Tomato Genome CDS (ITAG release 4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 34,993,605
  Number of sequences in database:  34,075



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5