BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome cDNA (ITAG release 2.40)
           34,725 sequences; 41,981,568 total letters



Query= Untitled_sequence

Length=1095
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc01g106870.2Receptor kinase 3 (AHRD V1 ***- Q948X3_BRACM); co...  1301    0.0  


>Solyc01g106870.2 Receptor kinase 3 (AHRD V1 ***- Q948X3_BRACM); contains Interpro 
domain(s)  IPR000719  Protein kinase, core 
Length=1408

 Score = 1301 bits (704),  Expect = 0.0
 Identities = 706/707 (99%), Gaps = 0/707 (0%)
 Strand=Plus/Plus

Query  1    ATGTTTCGCCGGTGTTTTGCTGGATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  65   ATGTTTCGCCGGTGTTTTGCTGGATGCATCAATCTGCCTTGCATACGAAAGAAAGGCCCA  124

Query  61   GTTGATGAGGAGGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  125  GTTGATGAGGAGGAGGAGGAGGATTTTCCCGTGAAAGATGAACTTCATAAACTCACATCC  184

Query  121  CAGGACCTAAGTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAAC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  185  CAGGACCTAAGTCGATTTACAGCCCAATTTTCTCCGGAAAATCTTGTTGGAGTCACCAAC  244

Query  181  TTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  245  TTAGGAAAGCTCTATCGTGGGAAGATGGTCATTGATGATATTAGCAAGGATGTCGCTGTC  304

Query  241  AAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  305  AAGATTATAGGTATTGATAAATGGATATTTCGATATACAGGCGACGACAGACTGGAAAGA  364

Query  301  TTCGAGTATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTG  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  365  TTCGAGTATGAATTGAAATTTTTGCAAGCTCCAAGGATTAAGGGCAATCCCAATTTAGTG  424

Query  361  AAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGTTTATGATCTAAATCCA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  425  AAAGTGATTGGATATTGTGAAGAGGAAGAGACCTTGGGTATTGTTTATGATCTAAATCCA  484

Query  421  CATGATATTTTGGAGAACTTAATTACTCGAGCTGACTTCAATTGGATGCTGAGAGTTAGG  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  485  CATGATATTTTGGAGAACTTAATTACTCGAGCTGACTTCAATTGGATGCTGAGAGTTAGG  544

Query  481  ACAGCCCTTACATTAGCTCGCTTGCTTAATTATCTGCATGATAGGAAATACCTCATTCGC  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  545  ACAGCCCTTACATTAGCTCGCTTGCTTAATTATCTGCATGATAGGAAATACCTCATTCGC  604

Query  541  AACTTTGCTCCATATCACATTGTGCTTGACCAGGATTTCACGCCAATTATGTTTGAGTTG  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  605  AACTTTGCTCCATATCACATTGTGCTTGACCAGGATTTCACGCCAATTATGTTTGAGTTG  664

Query  601  GGTTTGATTGTTGGAGGAGTTCTCGGTAATACAATCAATGAATCAGATATGAGATGTGCT  660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  665  GGTTTGATTGTTGGAGGAGTTCTCGGTAATACAATCAATGAATCAGATATGAGATGTGCT  724

Query  661  CCATATGGCTACATCGATTCATACATATTTCAATGTGGTACTGGTAC  707
            ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  725  CCATATGGCTACATCGATTCATACATATTTCAATGTGGTACTGATAC  771


 Score = 558 bits (302),  Expect = 3e-158
 Identities = 302/302 (100%), Gaps = 0/302 (0%)
 Strand=Plus/Plus

Query  794   ATACATTCAGTGTCAAGTCTGATGTTTTTGCGTTTGGTGTTTTGCTCTTAAACTTTATAA  853
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  768   ATACATTCAGTGTCAAGTCTGATGTTTTTGCGTTTGGTGTTTTGCTCTTAAACTTTATAA  827

Query  854   GCAAAAAAGTTGTTGAGAAAGGAAACCCCGTAGATAATGAGGTACTTGATTTATGGGCCT  913
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  828   GCAAAAAAGTTGTTGAGAAAGGAAACCCCGTAGATAATGAGGTACTTGATTTATGGGCCT  887

Query  914   TGAAGGAGTTCAAGCCCGGATGTTCACTTGTCCACCAAAGTTTTGTGGGTGATCCAGGTT  973
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  888   TGAAGGAGTTCAAGCCCGGATGTTCACTTGTCCACCAAAGTTTTGTGGGTGATCCAGGTT  947

Query  974   TTGGTCATCTTGATGCAGTTGCAATAACAGAACTTGCTAAACGTTGTGTAGAAGATCGAC  1033
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  948   TTGGTCATCTTGATGCAGTTGCAATAACAGAACTTGCTAAACGTTGTGTAGAAGATCGAC  1007

Query  1034  CAAAGAAACGACCAAATATGAAAGAAGTTGTTGCTTGTCTAGAGAATTTACATGTTGTGT  1093
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1008  CAAAGAAACGACCAAATATGAAAGAAGTTGTTGCTTGTCTAGAGAATTTACATGTTGTGT  1067

Query  1094  AG  1095
             ||
Sbjct  1068  AG  1069



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 43991384010


  Database: Tomato Genome cDNA (ITAG release 2.40)
    Posted date:  Mar 21, 2024  3:33 PM
  Number of letters in database: 41,981,568
  Number of sequences in database:  34,725



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5