BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome CDS (ITAG release 4.0) 34,075 sequences; 34,993,605 total letters Query= Solyc04g072900.1.1 Length=795 Score E Sequences producing significant alignments: (Bits) Value Solyc04g072900.1.1 1469 0.0 Solyc12g056980.1.1 235 3e-61 Solyc04g054910.4.1 95.3 5e-19 Solyc03g095977.1.1 87.9 9e-17 Solyc07g054220.1.1 82.4 4e-15 Solyc03g095973.1.1 82.4 4e-15 Solyc01g008890.4.1 71.3 9e-12 >Solyc04g072900.1.1 Length=795 Score = 1469 bits (795), Expect = 0.0 Identities = 795/795 (100%), Gaps = 0/795 (0%) Strand=Plus/Plus Query 1 ATGAATTCCCAAATCTTTTCAACTGGGTTTTCTGGGTATGGAATGGAGCAACAGGGTTCA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAATTCCCAAATCTTTTCAACTGGGTTTTCTGGGTATGGAATGGAGCAACAGGGTTCA 60 Query 61 ATTGGGCTGAATCAGTTAACCCCAATTCAGATCCAGCAAATTCAAGCTCAAATCAACTTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATTGGGCTGAATCAGTTAACCCCAATTCAGATCCAGCAAATTCAAGCTCAAATCAACTTT 120 Query 121 CAAAACCAACAACAACAGCAGCAGCAGCAGATGATGTTACAGACTGCCCATCATGCTTCC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CAAAACCAACAACAACAGCAGCAGCAGCAGATGATGTTACAGACTGCCCATCATGCTTCC 180 Query 181 ACCATGAATTTCTTGGCTCCAAAGCCGGTTCCAATGAAGCAATCTGGGTCGCCACCAAAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ACCATGAATTTCTTGGCTCCAAAGCCGGTTCCAATGAAGCAATCTGGGTCGCCACCAAAA 240 Query 241 CCCACGAAGCTCTACAGAGGTGTTAGACAACGCCACTGGGGTAAGTGGGTCGCTGAGATC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CCCACGAAGCTCTACAGAGGTGTTAGACAACGCCACTGGGGTAAGTGGGTCGCTGAGATC 300 Query 301 CGTTTGCCTAAGAACCGAACCCGCCTTTGGCTTGGTACATTTGACACCGCTGAAGAAGCT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGTTTGCCTAAGAACCGAACCCGCCTTTGGCTTGGTACATTTGACACCGCTGAAGAAGCT 360 Query 361 GCTCTGGCTTACGACAAGGCGGCGTATATGCTTCGTGGCGACTTTGCTCGACTGAACTTC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GCTCTGGCTTACGACAAGGCGGCGTATATGCTTCGTGGCGACTTTGCTCGACTGAACTTC 420 Query 421 CCTCAACTCCGCCACAACGGCAACCTAATCGGCGGCGACTTTGGTGAATACAATCCATTG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CCTCAACTCCGCCACAACGGCAACCTAATCGGCGGCGACTTTGGTGAATACAATCCATTG 480 Query 481 CATTCCTCAGTTGATGCTAAGCTAAAGGACATATGCCAAAGCTTGGCACAGGGGAAGAGC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CATTCCTCAGTTGATGCTAAGCTAAAGGACATATGCCAAAGCTTGGCACAGGGGAAGAGC 540 Query 541 ATTGACTCTAAGAAGAAGAAAACCAAAGGGTTGTCGGCGGAGAAAGCGGCGGTGGTGAAG 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 ATTGACTCTAAGAAGAAGAAAACCAAAGGGTTGTCGGCGGAGAAAGCGGCGGTGGTGAAG 600 Query 601 ATGGAGGAAGAGGAGAGCAAAACAGCAGAAGTTGGATCCGAAAGTGACGGGTCCCATTCC 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 ATGGAGGAAGAGGAGAGCAAAACAGCAGAAGTTGGATCCGAAAGTGACGGGTCCCATTCC 660 Query 661 GGTTCCGGTGGATCATCGCCGGTGACCGAACTGATATTCCCGGAGTTCACTGAGGAAGAG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GGTTCCGGTGGATCATCGCCGGTGACCGAACTGATATTCCCGGAGTTCACTGAGGAAGAG 720 Query 721 CCAACTTGGGACATGTCAGAAAATTTTTTGTTGCAGAAGTATCCATCTCATGAAATTGAT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CCAACTTGGGACATGTCAGAAAATTTTTTGTTGCAGAAGTATCCATCTCATGAAATTGAT 780 Query 781 TGGGCCTCTCTATAA 795 ||||||||||||||| Sbjct 781 TGGGCCTCTCTATAA 795 >Solyc12g056980.1.1 Length=924 Score = 235 bits (127), Expect = 3e-61 Identities = 290/371 (78%), Gaps = 2/371 (1%) Strand=Plus/Plus Query 189 TTTCTTGGCTCCAAAGCCGGTTCCAATGAAGCAATCTGGGTCGCCACCAAAACCCACGAA 248 || ||||| |||||||| ||| | ||||||||| | || ||||| ||||||||| | || Sbjct 309 TTACTTGGGGCCAAAGCCCGTTTCCATGAAGCAAACGGGCTCGCCCCCAAAACCCCCAAA 368 Query 249 GCTCTACAGAGGTGTTAGACAACGCCACTGGGGTAAGTGGGTCGCTGAGATCCGTTTGCC 308 ||| ||| | ||||||||||||||||| ||||| || ||||| || ||||| || ||||| Sbjct 369 GCTATACCGCGGTGTTAGACAACGCCATTGGGGGAAATGGGTGGCAGAGATTCGATTGCC 428 Query 309 TAAGAACCGAACCCGCCTTTGGCTTGGTACATTTGACACCGCTGAAGAAGCTGCTCTGGC 368 ||| ||| | ||||| |||||||| ||||||||||| || ||||| || || || |||| Sbjct 429 TAAAAACAGGACCCGGCTTTGGCTAGGTACATTTGATACTGCTGAGGAGGCCGCCTTGGC 488 Query 369 TTACGACAAGGCGGCGTATATGCTTCGTGGCGACTTTGCTCGACTGAACTTCCCTCAACT 428 || ||||||||||| |||| || | ||||| |||||||| |||| ||||| || || Sbjct 489 ATATGACAAGGCGGCTTATAAACTCAGAGGCGAGTTTGCTCGTTTGAATTTCCCCCATCT 548 Query 429 CCGCCACAACGGCAACCT-AATCGGCGGCGACTTTGGTGAATACAATCCATTGCATTCCT 487 ||| || ||||| | | | ||| || | || || ||||| || || || | || |||| Sbjct 549 CCGTCATAACGG-ATCATTAATTGGGAGTGAATTCGGTGAGTATAAGCCGCTTCACTCCT 607 Query 488 CAGTTGATGCTAAGCTAAAGGACATATGCCAAAGCTTGGCACAGGGGAAGAGCATTGACT 547 ||||| |||||||| || | | ||| || ||| ||||||||| || ||||||||||| Sbjct 608 CAGTTAATGCTAAGTTACAAGCCATTTGTCAAGACTTGGCACAAGGAAAGAGCATTGATA 667 Query 548 CTAAGAAGAAG 558 |||| |||||| Sbjct 668 CTAAAAAGAAG 678 >Solyc04g054910.4.1 Length=837 Score = 95.3 bits (51), Expect = 5e-19 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 244 ACGAAGCTCTACAGAGGTGTTAGACAACGCCACTGGGGTAAGTGGGTCGCTGAGATCCGT 303 || ||||| || | || |||||||||||||| ||||| || ||||| ||||| || | Sbjct 220 ACTAAGCTTTATCGTGGAGTTAGACAACGCCATTGGGGCAAATGGGTTGCTGAAATTAGA 279 Query 304 TTGCCTAAGAACCGAACCCGCCTTTGGCTTGGTACATTTGACACCGCTGAAGAAGCTGCT 363 | ||||||||| |||| | |||||| | || || ||||| || |||||||| |||||| Sbjct 280 CTTCCTAAGAACAGAACTAGGCTTTGGTTAGGCACTTTTGATACAGCTGAAGAGGCTGCT 339 Query 364 CTGGCTTACGACAAGGCGGCGTATATGCTTCGTGGCGACTTTGCT 408 ||||||| ||||| || || |||| ||| | || || |||||| Sbjct 340 TTGGCTTATGACAAAGCTGCTTATAAGCTAAGAGGTGAGTTTGCT 384 >Solyc03g095977.1.1 Length=843 Score = 87.9 bits (47), Expect = 9e-17 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 257 GAGGTGTTAGACAACGCCACTGGGGTAAGTGGGTCGCTGAGATCCGTTTGCCTAAGAACC 316 ||||||||||||||||| |||||| |||||||| |||||||||||| ||| || | Sbjct 131 GAGGTGTTAGACAACGCAGCTGGGGCAAGTGGGTAGCTGAGATCCGTGAGCCCCGTAAAC 190 Query 317 GAACCCGCCTTTGGCTTGGTACATTTGACACCGCTGAAGAAGCTGCTCTGGCTTACGAC 375 | || || | |||||| ||||| |||| || |||||||| ||||||| ||||| ||| Sbjct 191 GGACACGACGTTGGCTCGGTACTTTTGCTACTGCTGAAGATGCTGCTCGAGCTTATGAC 249 >Solyc07g054220.1.1 Length=1173 Score = 82.4 bits (44), Expect = 4e-15 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 244 ACGAAGCTCTACAGAGGTGTTAGACAACGCCACTGGGGTAAGTGGGTCGCTGAGATCCGT 303 |||||||| |||||||| || || || | || ||||| || ||||| ||||| || ||| Sbjct 532 ACGAAGCTATACAGAGGAGTGAGGCAGAGACATTGGGGGAAATGGGTAGCTGAAATTCGT 591 Query 304 TTGCCTAAGAACCGAACCCGCCTTTGGCTTGGTACATTTGACACCGCTGAAGAAGCTGCT 363 | ||| || | || || |||||||||||||| ||||| || |||||||| || ||| Sbjct 592 CTTCCTCGTAATAGGACTCGTCTTTGGCTTGGTACTTTTGATACAGCTGAAGATGCAGCT 651 Query 364 CTGGCTTACGACAAGGCGGCGTATATGCT 392 ||||||| ||| | |||||||| ||| Sbjct 652 ATGGCTTATGACCGCGAGGCGTATAAGCT 680 >Solyc03g095973.1.1 Length=843 Score = 82.4 bits (44), Expect = 4e-15 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 257 GAGGTGTTAGACAACGCCACTGGGGTAAGTGGGTCGCTGAGATCCGTTTGCCTAAGAACC 316 |||| |||||||||||| |||||| |||||||| |||||||||||| ||| || | Sbjct 131 GAGGAGTTAGACAACGCAGCTGGGGCAAGTGGGTAGCTGAGATCCGTGAGCCCCGTAAAC 190 Query 317 GAACCCGCCTTTGGCTTGGTACATTTGACACCGCTGAAGAAGCTGCTCTGGCTTACGAC 375 | || || | |||||| ||||| |||| || |||||||| ||||||| ||||| ||| Sbjct 191 GGACACGACGTTGGCTCGGTACTTTTGCTACTGCTGAAGATGCTGCTCGAGCTTATGAC 249 >Solyc01g008890.4.1 Length=1041 Score = 71.3 bits (38), Expect = 9e-12 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 253 TACAGAGGTGTTAGACAACGCCACTGGGGTAAGTGGGTCGCTGAGATCCGTTTGC-CTAA 311 |||| ||| ||||||||||| ||||| || |||| || |||||||| | | || Sbjct 319 TACAAAGGAGTTAGACAACGGAGATGGGGCAAATGGGCAGCAGAGATCCG-AGACACAAA 377 Query 312 GAACCGAACCCGCCTTTGGCTTGGTACATTTGACACCGCTGAAGAAGCTGCTCTGGCTTA 371 ||| ||| || |||||||| || | |||||||| ||||||||||||||| ||||||| Sbjct 378 AAACAAAACTCGACTTTGGCTGGGCAGTTTTGACACTGCTGAAGAAGCTGCTTTGGCTTA 437 Query 372 CGACAAGGC 380 || ||||| Sbjct 438 TGATAAGGC 446 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26289132100 Database: Tomato Genome CDS (ITAG release 4.0) Posted date: Mar 21, 2024 4:17 PM Number of letters in database: 34,993,605 Number of sequences in database: 34,075 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5