BLASTP 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Tomato Genome protein sequences (ITAG release 2.40)
           34,725 sequences; 11,955,943 total letters



Query= AT5G52300.2

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc03g025810.2Low-temperature-induced 65 kDa protein IPR012418 ...  159     2e-41


>Solyc03g025810.2 Low-temperature-induced 65 kDa protein  IPR012418  CAP160
Length=659

 Score = 159 bits (402),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 182/372 (49%), Gaps = 76/372 (20%)

Query  228  LEEDPAAPGGGSDYLSGVSNYQSKVTDPTHKGG-EAGVPEIAESLGRMKVTDESPDQKSR  286
            LEEDP  P    DY    +NYQSKVTDPT     EAGV  + +S  +M V D     + R
Sbjct  313  LEEDPNVP---KDY-PNPTNYQSKVTDPTGANNEEAGVSPLVQSFEKMGVNDVPEATRMR  368

Query  287  QGREEDFPTRSHEFDLKKESDINKNSPARFGGESKAGMEEDFPTRGDVKVESGLGRDLPT  346
                                                      P  GD + + G  R   T
Sbjct  369  TE----------------------------------------PKAGDFQFDHGTERRQYT  388

Query  347  GTHDQFSPELS---RPKERDDSEETKD-----------ESTHETKPSTYTEQLASATSAI  392
            G+HDQF+P+ S    P   +D+E               + T   KP +YTE L+SATSAI
Sbjct  389  GSHDQFAPQESPTVFPSVGEDTESIPKSMNPSNPQDLPQDTLTGKPGSYTETLSSATSAI  448

Query  393  TNKAIAAKNVVASKLGYTGENGGGQSESPVK--DET-PRSVTAYGQKVAGTVAEKLTPVY  449
             +KA+AAKN+VASKLGY    GG + E+ V   D T   S T Y QK A TVAEKL PVY
Sbjct  449  ADKAVAAKNIVASKLGY----GGTEEETRVTGGDATKTTSATEYAQKAASTVAEKLAPVY  504

Query  450  EKVKETGSTVMTKLPLSGGGSGV-KETQQGEEKGVTAKNYISEKLKPGEEDKALSEMIAE  508
            EKV   GSTVM K+       GV  E +   +KGV+   Y++EKLKPGEED+ALSE+I++
Sbjct  505  EKVAGAGSTVMAKVTGHENRGGVDAEHEVRTDKGVSMTEYLAEKLKPGEEDRALSEVISD  564

Query  509  KLHFGGGGEKKTTATKEVEVTVEKIPSDQI---AEGKGHGEAVAEEGKG------GEGMV  559
             L       ++T   K +    E +  ++     E K   E V   G+       G+G++
Sbjct  565  SLSIQKEKTEETEEAKPMGKVTESVEVERRLGPIEPKKKEEVVGSSGETKVGENLGQGVM  624

Query  560  GKVKGAVTSWLG  571
             +VKGAV++WLG
Sbjct  625  DRVKGAVSTWLG  636



Lambda      K        H        a         alpha
   0.303    0.126    0.351    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 4262936634


  Database: Tomato Genome protein sequences (ITAG release 2.40)
    Posted date:  Mar 21, 2024  3:33 PM
  Number of letters in database: 11,955,943
  Number of sequences in database:  34,725



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40