BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Capsicum annuum cv CM334 genome chromosomes (release 1.55)
           12 sequences; 2,753,501,687 total letters



Query= Untitled_sequence

Length=42
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Pepper1.55ch08                                                        41.7    0.013
Pepper1.55ch12                                                        32.5    7.6  


>Pepper1.55ch08 
Length=145103255

 Score = 41.7 bits (22),  Expect = 0.013
 Identities = 22/22 (100%), Gaps = 0/22 (0%)
 Strand=Plus/Plus

Query  1          TCCACCTGTTCTAACTGAAGCC  22
                  ||||||||||||||||||||||
Sbjct  131709686  TCCACCTGTTCTAACTGAAGCC  131709707


 Score = 38.1 bits (20),  Expect = 0.16
 Identities = 20/20 (100%), Gaps = 0/20 (0%)
 Strand=Plus/Minus

Query  23         GGGCATTCCTCTCACGCTTA  42
                  ||||||||||||||||||||
Sbjct  131709783  GGGCATTCCTCTCACGCTTA  131709764


>Pepper1.55ch12 
Length=235688241

 Score = 32.5 bits (17),  Expect = 7.6
 Identities = 17/17 (100%), Gaps = 0/17 (0%)
 Strand=Plus/Minus

Query  18         AAGCCGGGCATTCCTCT  34
                  |||||||||||||||||
Sbjct  196286694  AAGCCGGGCATTCCTCT  196286678



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 46809523579


  Database: Capsicum annuum cv CM334 genome chromosomes (release 1.55)
    Posted date:  Mar 21, 2024  3:36 PM
  Number of letters in database: 2,753,501,687
  Number of sequences in database:  12



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5