BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: N.benthamiana Genome v1.0.1 predicted proteins 57,140 sequences; 18,711,326 total letters Query= Untitled_sequence Length=500 Score E Sequences producing significant alignments: (Bits) Value Niben101Scf05124g01019.1sp|Q1RKE5|NUOM_RICBR **** NADH-quinone ox... 775 0.0 Niben101Scf07103g01024.1sp|Q4UK26|NUOM_RICFE *-*- NADH-quinone ox... 360 1e-121 Niben101Scf10442g00011.1sp|A6MM90|NU6C_BUXMI *-** NAD(P)H-quinone... 284 3e-91 Niben101Scf02929g05087.1sp|Q68VV6|NUOM_RICTY *-*- NADH-quinone ox... 135 2e-38 Niben101Scf08567g00005.1sp|A8DQI9|NU4M_AVAUN *-** NADH-ubiquinone... 112 5e-28 Niben101Scf13995g00004.1sp|P0CY44|NU4M_NEUCR *-*- NADH-ubiquinone... 100 8e-24 Niben101Scf05079g00020.1sp|Q2I3G5|NU4M_ELEMA *-*- NADH-ubiquinone... 100 3e-23 Niben101Scf07850g07005.1sp|Q8S8U7|NU4C_ATRBE *-*- NAD(P)H-quinone... 97.1 5e-22 Niben101Scf10881g00060.1sp|Q00506|NU4M_PHOVI *-*- NADH-ubiquinone... 90.1 5e-21 Niben101Scf02929g00073.1sp|Q8S8U7|NU4C_ATRBE *-*- NAD(P)H-quinone... 79.7 4e-16 Niben101Scf09153g05023.1sp|Q0G9R2|NU4C_DAUCA *-*- NAD(P)H-quinone... 65.1 2e-13 Niben101Scf00849g01019.1sp|Q9ZZ45|NU4M_SQUAC *-*- NADH-ubiquinone... 62.0 2e-11 >Niben101Scf05124g01019.1 sp|Q1RKE5|NUOM_RICBR **** NADH-quinone oxidoreductase subunit M IPR003918 (NADH:ubiquinone oxidoreductase) GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process) Length=429 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/390 (98%), Positives = 384/390 (98%), Gaps = 0/390 (0%) Query 2 NYFPWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYHFQSDDPL 61 NYFPWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYHFQSDDPL Sbjct 11 NYFPWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYHFQSDDPL 70 Query 62 IQLVEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDSRLFHFLMLAM 121 IQLVEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDSRLFHFLMLAM Sbjct 71 IQLVEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDSRLFHFLMLAM 130 Query 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGGSVFLLMG 181 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYS+TKFILYTAGGSVFLLMG Sbjct 131 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSSTKFILYTAGGSVFLLMG 190 Query 182 VLGLALYGSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEA 241 V GLALYGSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEA Sbjct 191 VFGLALYGSNEPTLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEA 250 Query 242 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAALTSLGQRNL 301 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAA TSLGQRNL Sbjct 251 HYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAASTSLGQRNL 310 Query 302 KKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYL 361 KKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIG LFFLAGTTYDRIRLVYL Sbjct 311 KKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGFIGDVLFFLAGTTYDRIRLVYL 370 Query 362 DEMGGIAIPMPKMFTMFSSFSMASLALPGM 391 DEMGGIAIPMPK FTMFSSFS ASLALPG+ Sbjct 371 DEMGGIAIPMPKKFTMFSSFSTASLALPGI 400 >Niben101Scf07103g01024.1 sp|Q4UK26|NUOM_RICFE *-*- NADH-quinone oxidoreductase subunit M IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit) Length=337 Score = 360 bits (923), Expect = 1e-121, Method: Compositional matrix adjust. Identities = 221/409 (54%), Positives = 251/409 (61%), Gaps = 104/409 (25%) Query 2 NYFPWLTIIVVFPIFAGSLIFFLPHKGNRVIRWYTICICILELLLTTYAFCYHFQSDDPL 61 NYFPWL IIVVF IFA SLIFFLP KGNRVIRWYTICIC LELLLTTYAFCYHFQ DDPL Sbjct 11 NYFPWLKIIVVFAIFANSLIFFLPDKGNRVIRWYTICICTLELLLTTYAFCYHFQMDDPL 70 Query 62 IQLVEDYKWINFFDFHWRLGIDGLSIGPILLTGFITTLATLAAWPVTRDSRLFHFLMLAM 121 IQLVEDYKWINFF + ++ + T FI +R++H+ + Sbjct 71 IQLVEDYKWINFF-----ISMEIRNTWTFYRTHFI--------------NRIYHYF--SY 109 Query 122 YSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGKKRLYSATKFILYTAGG-SVFLLM 180 +SG + ++S ++ F + ++ W + +I++T+G + F + Sbjct 110 FSG-LANYSRFSIIPFSHVCNVQ----------W---------SNWIIFTSGPFTFFHHV 149 Query 181 GVLGLALYGSNEPTLNFETSV--------------------NQSYPVVLEIIFYIGFFIA 220 GV + + ETSV NQSYPVVLEIIFYI FFIA Sbjct 150 GVRINSCLSTAMHVRRKETSVLIYKIYFVHGGGFCFSLNRINQSYPVVLEIIFYIKFFIA 209 Query 221 FAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWL 280 FAVKSPIIPLHTWL DTHGEAHYST Sbjct 210 FAVKSPIIPLHTWLLDTHGEAHYST----------------------------------- 234 Query 281 MIIGTIQIIYAALTSLGQRNLKKRIAYSSVSHMGFIIIGISSLTDTGLNGALLQIISHGF 340 IQIIYAA TSL QRNLKK + VSHMGFIIIGISSLT+TGLNGALLQIISHGF Sbjct 235 -----IQIIYAASTSLSQRNLKKSLF--PVSHMGFIIIGISSLTNTGLNGALLQIISHGF 287 Query 341 IGAALFFLAGTTYDRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALP 389 IGA LFFLAGTTYDRIRLVYLDEMGGIAIPMPKMFTMFSSFSMAS A+P Sbjct 288 IGATLFFLAGTTYDRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASPAIP 336 >Niben101Scf10442g00011.1 sp|A6MM90|NU6C_BUXMI *-** NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic IPR001457 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 6), IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit) GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0055114 (oxidation-reduction process) Length=397 Score = 284 bits (726), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 148/202 (73%), Positives = 157/202 (78%), Gaps = 32/202 (16%) Query 99 LATLAAWPVTRDSRLFHFLMLAMYSGQIGSFSSRDLLLFFIMWELELIPVYLLLCMWGGK 158 + TL AWPVTRDSRLFHF+MLAMYSG GK Sbjct 228 ITTLTAWPVTRDSRLFHFIMLAMYSG--------------------------------GK 255 Query 159 KRLYSATKFILYTAGGSVFLLMGVLGLALYGSNEPTLNFETSVNQSYPVVLEIIFYIGFF 218 KRLYS+TKFILYTAGG VFLLMGVLGLALY NEPTLNFETSVNQSYPVVLEIIF+IGF Sbjct 256 KRLYSSTKFILYTAGGFVFLLMGVLGLALYSINEPTLNFETSVNQSYPVVLEIIFHIGFL 315 Query 219 IAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSP 278 IAFAVKSP+IPLHTWL +THGEAHYSTCMLLA ILLKMGAYGLIRINM+LLP HSIFSP Sbjct 316 IAFAVKSPLIPLHTWLLNTHGEAHYSTCMLLARILLKMGAYGLIRINMDLLPLGHSIFSP 375 Query 279 WLMIIGTIQIIYAALTSLGQRN 300 WL+II TIQIIYAA TS+GQ N Sbjct 376 WLLIIYTIQIIYAASTSIGQWN 397 >Niben101Scf02929g05087.1 sp|Q68VV6|NUOM_RICTY *-*- NADH-quinone oxidoreductase subunit M IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit) Length=92 Score = 135 bits (340), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 70/79 (89%), Positives = 72/79 (91%), Gaps = 0/79 (0%) Query 313 MGFIIIGISSLTDTGLNGALLQIISHGFIGAALFFLAGTTYDRIRLVYLDEMGGIAIPMP 372 MGFIIIGISSLTDTGLN ALLQIIS GFIGAALFFLAGTTYDRIRLVYLDE+GGIAIPMP Sbjct 1 MGFIIIGISSLTDTGLNRALLQIISRGFIGAALFFLAGTTYDRIRLVYLDEIGGIAIPMP 60 Query 373 KMFTMFSSFSMASLALPGM 391 K+F MFS FSM SL LP M Sbjct 61 KIFMMFSCFSMDSLDLPRM 79 >Niben101Scf08567g00005.1 sp|A8DQI9|NU4M_AVAUN *-** NADH-ubiquinone oxidoreductase chain 4 IPR003918 (NADH:ubiquinone oxidoreductase) GO:0008137 (NADH dehydrogenase (ubiquinone) activity), GO:0042773 (ATP synthesis coupled electron transport), GO:0055114 (oxidation-reduction process) Length=254 Score = 112 bits (281), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 65/179 (36%), Positives = 103/179 (58%), Gaps = 10/179 (6%) Query 151 LLCMWGGKKRLYSATKFILYTAGGSVFLLM---------GVLGLALYGSNE-PTLNFETS 200 +LC ++++ +A + LYT GSVFLL+ G L + + E T + + S Sbjct 55 ILCSSRKQRKIKAAYQLFLYTLVGSVFLLLAILLILLQTGTTDLQISLTTEFRTTDLQIS 114 Query 201 VNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYG 260 + + +I +I F +FAVK P++P+H WLP+ H EA + ++LAG+ LK+G YG Sbjct 115 LTTEFSKRCQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTARAVILAGVALKLGTYG 174 Query 261 LIRINMELLPHAHSIFSPWLMIIGTIQIIYAALTSLGQRNLKKRIAYSSVSHMGFIIIG 319 +R ++ + P A + ++ + I IIY + T+L Q NLKK IAYSSV+HM + IG Sbjct 175 FLRFSIPMFPQATLCSTHFIYTLIAIAIIYTSSTTLRQINLKKIIAYSSVAHMNLVTIG 233 >Niben101Scf13995g00004.1 sp|P0CY44|NU4M_NEUCR *-*- NADH-ubiquinone oxidoreductase chain 4 IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit) Length=247 Score = 100 bits (249), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 51/135 (38%), Positives = 81/135 (60%), Gaps = 0/135 (0%) Query 194 TLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGIL 253 T + + S+ + +I +I F +FAVK P++P+H WLP+ H EA + ++LAGI Sbjct 48 TTDLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIA 107 Query 254 LKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAALTSLGQRNLKKRIAYSSVSHM 313 LK+G YG +R ++ + P A +P++ + I IIY + T+L Q +LKK IAYSSV+HM Sbjct 108 LKLGTYGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSSTTLRQIDLKKIIAYSSVAHM 167 Query 314 GFIIIGISSLTDTGL 328 + I + G+ Sbjct 168 NLVTIERNRYVSDGV 182 >Niben101Scf05079g00020.1 sp|Q2I3G5|NU4M_ELEMA *-*- NADH-ubiquinone oxidoreductase chain 4 IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit) Length=321 Score = 100 bits (249), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 51/135 (38%), Positives = 81/135 (60%), Gaps = 0/135 (0%) Query 194 TLNFETSVNQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGIL 253 T + + S+ + +I +I F +FAVK P++P+H WLP+ H EA + ++LAGI Sbjct 48 TTDLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIA 107 Query 254 LKMGAYGLIRINMELLPHAHSIFSPWLMIIGTIQIIYAALTSLGQRNLKKRIAYSSVSHM 313 LK+G YG +R ++ + P A +P++ + I IIY + T+L Q +LKK IAYSSV+HM Sbjct 108 LKLGTYGFLRFSIPMFPEATLCSTPFIYTLSAIAIIYTSSTTLRQIDLKKIIAYSSVAHM 167 Query 314 GFIIIGISSLTDTGL 328 + I + G+ Sbjct 168 NLVTIERNRYVSDGV 182 >Niben101Scf07850g07005.1 sp|Q8S8U7|NU4C_ATRBE *-*- NAD(P)H-quinone oxidoreductase chain 4, chloroplastic IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit), IPR011685 (LETM1-like) Length=322 Score = 97.1 bits (240), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 68/96 (71%), Positives = 70/96 (73%), Gaps = 13/96 (14%) Query 154 MWGGKKRLYSATKFILYTAGGSVFLLMGVLGLALYGSNEPTLNFETSVNQSYPVVLEIIF 213 MW KK LYSA K ILY G SVFLLMGV G+ALY VNQSYPVVL IIF Sbjct 37 MWERKKHLYSAIKSILYMEG-SVFLLMGVFGVALY------------VNQSYPVVLVIIF 83 Query 214 YIGFFIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLL 249 +IGFFIAFAVK II LHT LPDTHGEAHYSTCMLL Sbjct 84 FIGFFIAFAVKLLIISLHTCLPDTHGEAHYSTCMLL 119 >Niben101Scf10881g00060.1 sp|Q00506|NU4M_PHOVI *-*- NADH-ubiquinone oxidoreductase chain 4 IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit) Length=159 Score = 90.1 bits (222), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 50/123 (41%), Positives = 74/123 (60%), Gaps = 1/123 (1%) Query 202 NQSYPVVLEIIFYIGFFIAFAVKSPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGL 261 +Y +I +I F +FAVK P++P+H WLP+ H EA + ++LAGI LK+G YG Sbjct 11 QSAYCTXRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGIALKLGTYGF 70 Query 262 IRINMELLPHAHSIFSPWLMIIGTIQIIYAALTSLGQRNLKKRIAYSSVSHMGFIIIGIS 321 +I +P + ++ + I II ++ T+L Q NLKK IAYSSV+HM + IG+ Sbjct 71 FKIFNTHVPEETLCSTSFIYTLSAIAIISSS-TTLRQINLKKIIAYSSVAHMNLVTIGML 129 Query 322 SLT 324 S T Sbjct 130 SPT 132 >Niben101Scf02929g00073.1 sp|Q8S8U7|NU4C_ATRBE *-*- NAD(P)H-quinone oxidoreductase chain 4, chloroplastic IPR008543 (Uncharacterised protein family Ycf2) GO:0005524 (ATP binding), GO:0009507 (chloroplast) Length=320 Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 37/44 (84%), Positives = 39/44 (89%), Gaps = 0/44 (0%) Query 346 FFLAGTTYDRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALP 389 F+LAGTTYDRI L+YLDEMGGIAIPMPKMFTMFS SM SL LP Sbjct 8 FYLAGTTYDRIHLLYLDEMGGIAIPMPKMFTMFSRCSMVSLELP 51 >Niben101Scf09153g05023.1 sp|Q0G9R2|NU4C_DAUCA *-*- NAD(P)H-quinone oxidoreductase chain 4, chloroplastic Length=49 Score = 65.1 bits (157), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 30/39 (77%), Positives = 33/39 (85%), Gaps = 0/39 (0%) Query 351 TTYDRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALP 389 +T R Y+DEMGGIAIPMPK+FTMFSSFSMASLALP Sbjct 3 STVSEKRCCYVDEMGGIAIPMPKIFTMFSSFSMASLALP 41 >Niben101Scf00849g01019.1 sp|Q9ZZ45|NU4M_SQUAC *-*- NADH-ubiquinone oxidoreductase chain 4 IPR001750 (NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit) Length=137 Score = 62.0 bits (149), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/138 (32%), Positives = 65/138 (47%), Gaps = 18/138 (13%) Query 337 SHGFIGAALFFLAGTTYDRIRLVYLDEMGGIAIPMPKMFTMFSSFSMASLALPGMSGFVA 396 SHG + +ALF G YDR + + GG MP + T+F S ++A+++ PG S F+ Sbjct 3 SHGLVSSALFLCVGVLYDRHKTRLVRYYGGSVSTMPNLSTIFFSSTLANMSSPGTSSFIG 62 Query 397 ELIVFFGIITGQKYLLIPKILITFVMAIGMILTPIYSLSMSRQMFYGYKLFNAPKD---S 453 E ++ G L+ + A+GMIL YSL + + G N D Sbjct 63 EFLILVGAFQRNS-------LVATLAALGMILGAAYSLWLYNRAVSG----NLKPDFLHK 111 Query 454 FFDSGPRELFLSISIFLP 471 F D RE +SIF+P Sbjct 112 FSDPNGRE----VSIFIP 125 Lambda K H a alpha 0.332 0.147 0.460 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4985867484 Database: N.benthamiana Genome v1.0.1 predicted proteins Posted date: Mar 21, 2024 4:04 PM Number of letters in database: 18,711,326 Number of sequences in database: 57,140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40