BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome cDNA (ITAG release 2.40) 34,725 sequences; 41,981,568 total letters Query= Untitled_sequence Length=2200 Score E Sequences producing significant alignments: (Bits) Value Solyc01g088700.2Eukaryotic translation initiation factor 4 gamma ... 2063 0.0 >Solyc01g088700.2 Eukaryotic translation initiation factor 4 gamma 1 (AHRD V1 *-*- A9QXE6_MESAU); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 Length=5627 Score = 2063 bits (1117), Expect = 0.0 Identities = 1849/2200 (84%), Gaps = 60/2200 (3%) Strand=Plus/Plus Query 28 TCC-GGAGATGCATCTAGGTCATTTCCACTTCAATTTGGATCTATAAGTCCTGGTGTCAT 86 ||| ||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| Sbjct 456 TCCAGGAGATGCATCTAAGTCATTTCCACTTCAATTTGGATCCATAAGTCCCGGTGTCAT 515 Query 87 GAATGTACTGCAGATACCTGCGCGGACGAGCTCAGCTCCACCAAATTTGGATGAGCAGAA 146 |||||| || |||||||||||||| || |||||||||||||||||| ||||||||||||| Sbjct 516 GAATGTTCTTCAGATACCTGCGCGAACAAGCTCAGCTCCACCAAATCTGGATGAGCAGAA 575 Query 147 AAGAGCCCAGGCTCGCAGTGACACTTCAAGAGCTATACCTTCATTGCCAACTCCATCTAC 206 |||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||| || Sbjct 576 GAGAGCCCAGGCTCGTGGTGACACTTCAAGAGCTATTCCTTCGTTGCCAAATCCATCCAC 635 Query 207 GTCCAACCAGCCAATGCCAAGAAAGGATGCAGGACCCCAGAACCAGTCTAATCCTGGCGA 266 ||||| ||||| ||||||||||||||||||||||||| ||||| || |||| | | || Sbjct 636 TTCCAAGCAGCCTATGCCAAGAAAGGATGCAGGACCCCTCAACCAATCCAATCATAGTGA 695 Query 267 GTCTCATGGTGTGGCCGCCAAACCCAAAAGAGATGTACAAGTTTCAGCTCCACCCGCAGT 326 | || |||| ||||| ||| ||||||||||||||||| ||| ||||||||| | || Sbjct 696 GGCTTATGGGGTGGCTAACAAGCCCAAAAGAGATGTACACATTTTAGCTCCACCTCCTGT 755 Query 327 GACCCAAACTCAAAAGCCGTCTGCACATCCCATGCCCGGAATGCACATGCAAATTCCATT 386 || ||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| Sbjct 756 TACTCAAACACAAAAGCCTTCTACACATCCCATGCCTGGAATGCACATGCAAATTCCATT 815 Query 387 TCACCAGCCACCACAAGTTCCTGTTCAATTTGGTGGCCCCGGGCCACAAATTCCGTCTCA 446 ||||||||||| ||||||||||||||||||||||| || || ||||||||||| ||||| Sbjct 816 CCACCAGCCACCTCAAGTTCCTGTTCAATTTGGTGGTCCTGGACCACAAATTCCATCTCA 875 Query 447 TTCCATGTCTGCTACATCATTGCCAATGCCGATGCATCTGCCGATTGGCACTCCGTCTAT 506 ||||||||||||||||||||| |||||||||||||||||||| |||| || ||| |||| Sbjct 876 TTCCATGTCTGCTACATCATTACCAATGCCGATGCATCTGCCAATTGTCAATCCACCTAT 935 Query 507 GCAGCAGCCAATGTTTGTCTCAGGTCTTCAACCCCACCCAATGCAGTCTCAAGGGATGAT 566 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 936 GCAGCAGCCAATGTTTGTCTCAAATCTTCAACCCCACCCAATGCAGTCTCAAGGGATGAT 995 Query 567 GCATCAGGGGCAGGGCCTGAATTTTTCATCAGGAATGGGACCTCAACTACCTCCGCAGTT 626 |||||||||||||||| ||||||||||||||||||| || |||| || |||| ||| || Sbjct 996 GCATCAGGGGCAGGGCTTGAATTTTTCATCAGGAATTGGGGCTCAGCTGCCTCAGCAATT 1055 Query 627 GGGGAACATGGGAATGAATATGCCGTCACAGTTTCCTCAACAGCAGGCAGGAAAGTATCT 686 |||||||||||||||||||||||| ||||||||| ||| |||||||| || |||| || Sbjct 1056 GGGGAACATGGGAATGAATATGCCATCACAGTTTTCTCCGCAGCAGGCTGGGAAGTTCCT 1115 Query 687 AGGTGCACGTAAAACTGTGAAGATTACTCATCCAGAAACTCATGAAGAATTGAGGCTTGA 746 |||| |||||||| ||||||||| ||||| || |||||||||||||||||||||||||| Sbjct 1116 AGGTCAACGTAAAAGTGTGAAGATAACTCACCCGGAAACTCATGAAGAATTGAGGCTTGA 1175 Query 747 TGGGACTCCTGGTTCGATGTCACATCCTAATATGCCACCTCAATCACAGCCTATTGCATC 806 | || ||| | | ||| ||||||||||||||||||||||||||||||||||| Sbjct 1176 AGAGA-----GGT-C-A---CAC--CCTAATATGCCACCTCAATCACAGCCTATTGCATC 1223 Query 807 ATTTCCTCCTGGTCATCCTATTAACTATTATCCTAATTCTTATAATTCCAGTTCTGTTTA 866 || | |||| ||||||| |||||||||||| || ||||||||||||| ||||||||| Sbjct 1224 ATATTCTCCCAGTCATCC---TAACTATTATCCCAACTCTTATAATTCCAATTCTGTTTA 1280 Query 867 CTTTCAAGCTCCAAGTTCTCTCCCTCTCAATAACCCTCAGAGTTCTCAGCCACCAAGGCT 926 ||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||| Sbjct 1281 CTTTCAAGCTCCAAGTTCTATTCCTCTCAGTAACACTCAGAGTTCTCAGCCACCAAGGCC 1340 Query 927 TTTTAGTCAGGTGACAGTGAAACCGGCTGCT--A-GAATACATCCAGAAAAAGAGCATTT 983 ||||| ||||||||||||||||||||||||| | |||||||| ||| ||||||||| || Sbjct 1341 TTTTAATCAGGTGACAGTGAAACCGGCTGCTGGAGGAATACATTCAGGAAAAGAGCAGTT 1400 Query 984 ACCATCTGTCAGTTCAGCTGCTTTTGGAAAAGATCAAGTGAGACTTTCGAAGCCTCCTGG 1043 ||||||||| ||||| | ||||||||||||||| |||||| || || ||||| ||| Sbjct 1401 ACCATCTGTTAGTTCT--T-CTTTTGGAAAAGATCCAGTGAGGCTCTCAAAGCCATGTGG 1457 Query 1044 AGGAGATTCAGCTCACCCTCAAAAAGACATGGACACTTTACATCAGAGCTCCTCCGCACA 1103 |||||||||||||||| |||| |||||| |||||| |||||| |||||| || | || Sbjct 1458 AGGAGATTCAGCTCACTCTCAGAAAGACGCAAACACTTCACATCAAAGCTCCACCACTCA 1517 Query 1104 GTCAAAGATTGGCAATGCTTCAAAATCTGCATCAAGGCCTGTAGCAAACATACAATCTAT 1163 ||||| || |||| ||| ||||||||| | ||||||||||||| ||| |||||||||| Sbjct 1518 GTCAAGGACTGGCGATGGCTCAAAATCTTCTTCAAGGCCTGTAGAAAATATACAATCTAC 1577 Query 1164 TAAAGTGGCTGATTCTATCTCAGAGCAGAGCCCAGCAGCTGGTGTATCGTCATTGACCTC 1223 ||||| ||||||||||||||||| | ||||| |||||||||| ||| |||||||||||| Sbjct 1578 TAAAGGGGCTGATTCTATCTCAGGGAAGAGCTCAGCAGCTGGCATATTGTCATTGACCTC 1637 Query 1224 TCAGGCTCCCAGTGAGCCTTCAGTATCTGTAATTACAGATAGTAGTGTAGATGCAACAAC 1283 ||| ||||||| |||| ||||| |||| |||||| ||||||||||||||||||| | | Sbjct 1638 TCAAGCTCCCATTGAGTCTTCAACATCTCTAATTAGAGATAGTAGTGTAGATGCAGCTAG 1697 Query 1284 TGAAACACTTGGCGTCCTGGAACCCACTGAAGATCAACAGAAAAAACAAGCAA-TA---- 1338 |||||||||||| | || || |||||||||||||| |||||||||||| || || Sbjct 1698 TGAAACACTTGGTGGCCCAGACTCCACTGAAGATCAAAAGAAAAAACAAGTAACTAGGGG 1757 Query 1339 A-----GA--G-----GAC-AGGCTCTTGGGAAATCTACCTCAGTTTCAAGTCCCCCATC 1385 | || | || ||||||||||||||| |||||||||||||| || | | Sbjct 1758 ACAATTGACTGTTCAAGATAAGGCTCTTGGGAAATGTACCTCAGTTTCAATTCAGACTCC 1817 Query 1386 CCAGTATCCACTAACTGGACACGTTGAGGTCAAGACTGCTGCTTCATTGGGCCCTGCTGC 1445 ||||||||||||||| || |||||||||||| |||||||| ||| || || |||||| Sbjct 1818 CCAGTATCCACTAACCACACTCGTTGAGGTCAATACTGCTGCCTCAGTGAGCACTGCTG- 1876 Query 1446 ACTGGGAAACAGTAGGGAAAATCTTTCTCCTTCAGAGTCCGTTGTATTGAAAAGCTGC-A 1504 || |||| |||||||| ||| |||| |||||||||| || ||||| ||| | | Sbjct 1877 --TG---AACACTAGGGAAAGTCTATCTCTGTCAGAGTCCGCTGAATTGAGAAG-TCATA 1930 Query 1505 TTACTGGAGATAGTGGAAAAGAAGTTTCGCCCGAACTTTTGGATTCCAGAAATCTGGTTG 1564 |||||||| || ||||||| |||| || | | |||| ||||||||||||||||| || || Sbjct 1931 TTACTGGAAATTGTGGAAAGGAAGATTTGTCTGAACCTTTGGATTCCAGAAATCAGGATG 1990 Query 1565 CAGGTATGCCAGTACCTAAAACTGGGGATAGATATGAAGTAACATTGCCGGAGGTTGGTG 1624 | || | ||||||| |||||||||||||||| |||||||| ||||| | ||| || | Sbjct 1991 CGGGCAAACCAGTACTTAAAACTGGGGATAGAAATGAAGTAGCATTGTCTAAGGCCGG-G 2049 Query 1625 AA-CAGGGTGAGAATAATATCTCGAAGCCGTCTTCTGGATCTCTTCTGGTAAAATCTGTT 1683 || |||| |||||||||| || |||||| |||| | |||||||| |||| ||||| | Sbjct 2050 AAGCAGGACGAGAATAATAGCTTGAAGCCACCTTCAGAATCTCTTCCGGTAGAATCTCCT 2109 Query 1684 GAGGTGTCTGGCCTGACCGAAGAGGGATCTCCTGAGAAAGCAACAAATGCCAACATTGAG 1743 |||||||||||||| || |||| ||| ||||| ||| |||| | ||||||| |||||| Sbjct 2110 GAGGTGTCTGGCCTAACTGAAGGGGGTTCTCCAAAGAGAGCAGCGTATGCCAATATTGAG 2169 Query 1744 AGCGGTCAGCCAGAAACTGGAGAGGAAGATACA--AATGCATCTGCCG---GCTCAACTG 1798 | |||| ||||||| ||||| ||| | ||| |||| ||||| | | ||||||| Sbjct 2170 AATGGTCGACCAGAAATTGGAGTGGA-GC-ACATGAATGAATCTGTAGCTTGTTCAACTG 2227 Query 1799 GAGTTGATAGCATGGCTGATAGCATAACATCATCCACTTGTAATCAGAATTTTACAGATA 1858 ||||||||||||| ||||||||| | ||||||||||||| ||| ||| ||| ||| ||| Sbjct 2228 GAGTTGATAGCATAGCTGATAGCTTTACATCATCCACTTCTAACCAGGATTCTACTAATA 2287 Query 1859 CTGAGGCTTGCACATCAGCAATAGGTCTATCAGCTCAAGATGATCAGGCATCAGATATTG 1918 | |||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| Sbjct 2288 CCGAGGCTTGCACATCAGCAATTGGTCTATCGGCTCAAGATGATCAGGAATCAGATATTG 2347 Query 1919 CAGACCCCGAAGAAGCTGCTGTGACAGAATCGGCTGTAGTAAGTCAGGAATCTGCCTCTA 1978 | ||||||||||||||| |||| ||| | |||| || | ||||||||| | |||||| Sbjct 2348 CGGACCCCGAAGAAGCTCCTGTTACAAAGTCGGTTGACGCAAGTCAGGAGTTCGCCTCTG 2407 Query 1979 ATTTGGTTAAGAATTCTGATGAGGCCACTTCGAAGTGTGAAGATGAAAATACTGAAGCTG 2038 ||||| | |||| |||||||||||||||||| ||| |||||||||||||||||||| || Sbjct 2408 ATTTGTTGAAGAGTTCTGATGAGGCCACTTCAAAGAGTGAAGATGAAAATACTGAAACTA 2467 Query 2039 ATAATTCCGGTGTAGCT---AAGTCGTCGTCTGGTGTCAAGGAGAAATCTCTGGTGGATT 2095 ||| ||||| ||| | |||||||| ||||| ||||||||||||||| ||||||||| Sbjct 2468 GTAACGCCGGTTTAGTTTCCAAGTCGTCATCTGGCGTCAAGGAGAAATCTTTGGTGGATT 2527 Query 2096 CCAATGTGCCTAAGGTTACTGCGGCTAGGGGAAAGATGAAAAAGAAAGACTTGTACAAGA 2155 |||||||||||||||| ||| | ||||||| || | ||| || |||||||| || |||| Sbjct 2528 CCAATGTGCCTAAGGTCACTATGTCTAGGGGTAAAAAGAAGAAAAAAGACTTATATAAGA 2587 Query 2156 AAGCAGATGCTGCTGGCGCGACTTCTGATCTCTATATGGC 2195 | |||||||||||||| |||||||||||||| |||||||| Sbjct 2588 AGGCAGATGCTGCTGGTGCGACTTCTGATCTTTATATGGC 2627 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89305132932 Database: Tomato Genome cDNA (ITAG release 2.40) Posted date: Mar 21, 2024 3:33 PM Number of letters in database: 41,981,568 Number of sequences in database: 34,725 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5