BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: N.benthamiana Genome v1.0.1 predicted proteins 57,140 sequences; 18,711,326 total letters Query= NP_001074930.1 Length=486 Score E Sequences producing significant alignments: (Bits) Value Niben101Scf01450g01001.1sp|Q6PFM0|JMJD6_DANRE *-*- Bifunctional a... 201 7e-56 Niben101Scf10920g01029.1sp|Q9H9V9|JMJD4_HUMAN *-*- JmjC domain-co... 185 2e-52 Niben101Scf12589g00007.1sp|Q9H9V9|JMJD4_HUMAN *-*- JmjC domain-co... 184 6e-52 Niben101Scf02537g03012.1sp|Q6PFM0|JMJD6_DANRE *-*- Bifunctional a... 135 1e-33 Niben101Ctg09534g00001.1sp|Q6AYK2|JMJD6_RAT *-*- Bifunctional arg... 75.5 9e-16 >Niben101Scf01450g01001.1 sp|Q6PFM0|JMJD6_DANRE *-*- Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 IPR001810 (F-box domain), IPR003347 (JmjC domain), IPR011009 (Protein kinase-like domain) GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=972 Score = 201 bits (510), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 109/255 (43%), Positives = 149/255 (58%), Gaps = 19/255 (7%) Query 117 NVERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGED 176 NVERA LS+EEF ++Y+ KPV++ + + W A WT E L +KY + FK + Sbjct 158 NVERAK--NLSIEEFHDKYDGQ-KPVLIAGSADTWPASTTWTTEELLKKYEDTTFKLSQ- 213 Query 177 NDGYSVKMKMKYYIEYMESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYA 236 + +KMK+K Y+ Y++ D+ PLYIFD +GE +LL+DY VP F +D F Sbjct 214 RSRHKIKMKLKDYVSYIKLQHDEDPLYIFDEKFGETAP--ELLKDYSVPNIFKEDFFDVL 271 Query 237 GEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDE 296 +RPP+RW ++GP RSG H+DP TSAWN L+ G KR L T + V ++ Sbjct 272 DRDQRPPFRWLIIGPERSGASWHVDPALTSAWNTLLCGRKRIPLGVT------VHVNEED 325 Query 297 GGNQQD--EAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTI 354 G D ++ W+ YP E KP+E Q PGET+FVP GWWH VLNL+TTI Sbjct 326 GDVSIDTPSSLQWWLDFYPLLA-----EEDKPIECTQLPGETIFVPSGWWHCVLNLETTI 380 Query 355 AITQNFASSTNFPVV 369 A+TQNF ++ NF V Sbjct 381 AVTQNFVNTKNFEFV 395 >Niben101Scf10920g01029.1 sp|Q9H9V9|JMJD4_HUMAN *-*- JmjC domain-containing protein 4 IPR001810 (F-box domain), IPR003347 (JmjC domain) GO:0005515 (protein binding) Length=511 Score = 185 bits (470), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 100/242 (41%), Positives = 139/242 (57%), Gaps = 14/242 (6%) Query 126 LSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMK 185 +SV+EFV +E P KPV+L E W A EKW + L + + KF G V+MK Sbjct 207 ISVDEFVMNFEEPNKPVLLEGCLENWPALEKWNRDYLVEECGDVKFSVG------PVEMK 260 Query 186 MKYYIEYMESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYR 245 ++ Y Y + R++ PLY+FD + E K +L +DY VP +F +DLF G +R P YR Sbjct 261 LEDYFNYSDQAREERPLYLFDPKFAE--KVPQLGKDYDVPMYFNEDLFSVLGNER-PDYR 317 Query 246 WFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAI 305 W ++GP SG+ HIDP TSAWNA+++G K+W LFP + + D +I Sbjct 318 WIIIGPAGSGSSFHIDPNSTSAWNAVIKGSKKWVLFPPDVVPPGVHPSPDGAEVASPVSI 377 Query 306 T-WFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASST 364 WF Y T+ W +P+E + K GE +FVP GWWH+V+NL+ +IAITQNF S Sbjct 378 IEWFMNFYNATK--NWKK--RPIECVCKAGEVIFVPNGWWHLVINLEDSIAITQNFVSRR 433 Query 365 NF 366 N Sbjct 434 NL 435 >Niben101Scf12589g00007.1 sp|Q9H9V9|JMJD4_HUMAN *-*- JmjC domain-containing protein 4 IPR001810 (F-box domain), IPR003347 (JmjC domain) GO:0005515 (protein binding) Length=511 Score = 184 bits (466), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 101/252 (40%), Positives = 143/252 (57%), Gaps = 16/252 (6%) Query 116 DNVERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGE 175 DN+ R + S++EFV +E P KPV+L E W A EKW + L + + KF G Sbjct 199 DNIVRRRGI--SLDEFVMNFEEPNKPVLLEGCLESWPALEKWNRDYLVEECGDVKFSVG- 255 Query 176 DNDGYSVKMKMKYYIEYMESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQY 235 V+MK++ Y Y + R++ PLY+FD + E K +L +DY +P +F +DLF Sbjct 256 -----PVEMKLEDYFSYSDQAREERPLYLFDPKFAE--KVPQLGKDYDLPMYFNEDLFSV 308 Query 236 AGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRD 295 G +R P YRW ++GP SG+ HIDP TSAWNA+++G K+W LFP + + D Sbjct 309 LGSER-PDYRWIIIGPAGSGSSFHIDPNSTSAWNAVIKGSKKWLLFPPDVVPPGVHPSPD 367 Query 296 EGGNQQDEAIT-WFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTI 354 +I WF Y T + W +P+E + K GE +FVP GWWH+V+NL+ +I Sbjct 368 GAEVASPVSIIEWFMNFYNATMI--WKK--RPIECVCKAGEVIFVPNGWWHLVINLEDSI 423 Query 355 AITQNFASSTNF 366 AITQNF S N Sbjct 424 AITQNFVSRRNL 435 >Niben101Scf02537g03012.1 sp|Q6PFM0|JMJD6_DANRE *-*- Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 IPR001810 (F-box domain), IPR003347 (JmjC domain), IPR011009 (Protein kinase-like domain) GO:0005515 (protein binding), GO:0016772 (transferase activity, transferring phosphorus-containing groups) Length=770 Score = 135 bits (339), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 69/161 (43%), Positives = 96/161 (60%), Gaps = 6/161 (4%) Query 117 NVERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGED 176 NVERA LS+EEF ++Y+ KPV++ + W A WT + L +KY + FK + Sbjct 143 NVERAK--NLSIEEFHDKYDGQ-KPVLIAGLADTWPASATWTTKELLKKYEDTTFKLSQ- 198 Query 177 NDGYSVKMKMKYYIEYMESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYA 236 + +KMK+K Y+ Y++ D+ PLYIF +GE +LL+DY VP F +D F Sbjct 199 RSRHKIKMKLKDYVSYIKLQHDEDPLYIFAEKFGETAP--ELLKDYSVPNIFKEDFFDVL 256 Query 237 GEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKR 277 +RPP+RW +MGP RSG H+DP TSAWN L+ G KR Sbjct 257 DRDQRPPFRWLIMGPERSGASWHVDPALTSAWNTLLCGRKR 297 >Niben101Ctg09534g00001.1 sp|Q6AYK2|JMJD6_RAT *-*- Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 IPR003347 (JmjC domain) Length=171 Score = 75.5 bits (184), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 31/52 (60%), Positives = 38/52 (73%), Gaps = 0/52 (0%) Query 318 PTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVV 369 P E KP+E Q PGET+FVP GWWH VLNL+TT+A+TQNF ++ NF V Sbjct 5 PLLAEEDKPIECTQLPGETIFVPSGWWHCVLNLETTVAVTQNFVNTKNFEFV 56 Lambda K H a alpha 0.316 0.131 0.404 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4843129506 Database: N.benthamiana Genome v1.0.1 predicted proteins Posted date: Mar 21, 2024 4:04 PM Number of letters in database: 18,711,326 Number of sequences in database: 57,140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40