BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome cDNA (ITAG release 2.40)
           34,725 sequences; 41,981,568 total letters



Query= Untitled_sequence

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc10g083140.1Unknown Protein (AHRD V1)                             383     5e-106


>Solyc10g083140.1 Unknown Protein (AHRD V1)
Length=207

 Score = 383 bits (207),  Expect = 5e-106
 Identities = 207/207 (100%), Gaps = 0/207 (0%)
 Strand=Plus/Plus

Query  115  ATGTCCCCGACGAATTCATGTGTATCATCTGATAATTCGTCGGGGGGACAACGTGGTTCC  174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCCCCGACGAATTCATGTGTATCATCTGATAATTCGTCGGGGGGACAACGTGGTTCC  60

Query  175  AACAGCCCCGAAGCGGTGACTTCGATGCTGTTGGTTGGTTGTCAAAGGTGTCTAATGTAT  234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AACAGCCCCGAAGCGGTGACTTCGATGCTGTTGGTTGGTTGTCAAAGGTGTCTAATGTAT  120

Query  235  GTTATGGTATCGGAAGTTAATGATCCACCAAGGTGCCCAAAATGCAAGAGTACTTGTTTG  294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTTATGGTATCGGAAGTTAATGATCCACCAAGGTGCCCAAAATGCAAGAGTACTTGTTTG  180

Query  295  CTTGAAGTTATCTATGAGAAAAAATAA  321
            |||||||||||||||||||||||||||
Sbjct  181  CTTGAAGTTATCTATGAGAAAAAATAA  207



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 12221005896


  Database: Tomato Genome cDNA (ITAG release 2.40)
    Posted date:  Mar 21, 2024  3:33 PM
  Number of letters in database: 41,981,568
  Number of sequences in database:  34,725



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5