BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Capsicum annuum cv CM334 genome chromosomes (release 1.55) 12 sequences; 2,753,501,687 total letters Query= Untitled_sequence Length=4077 Score E Sequences producing significant alignments: (Bits) Value Pepper1.55ch09 592 7e-166 Pepper1.55ch07 76.8 8e-11 >Pepper1.55ch09 Length=252779264 Score = 592 bits (320), Expect = 7e-166 Identities = 705/895 (79%), Gaps = 9/895 (1%) Strand=Plus/Minus Query 3188 ATTAAATTTGTTT---ACAGTTCTTTTACTTCGACTCCCTGGAATCACTTCCAACTGAGC 3244 ||| ||||||||| |||||| || ||||| |||||| | ||||| ||||||||||| | Sbjct 189243181 ATTCAATTTGTTTGCGACAGTTTTTCTACTTTGACTCCGTTGAATCTCTTCCAACTGAAC 189243122 Query 3245 CACTGGATCCTAGTGATTTGAAGCCATTAAATACTCGGTATGATGCCCAAATCTCAGTCT 3304 || ||||||| | |||||||||||| || |||| ||| |||||||||||||||||||| | Sbjct 189243121 CATTGGATCCAAATGATTTGAAGCCCTTGAATAGTCGTTATGATGCCCAAATCTCAGTTT 189243062 Query 3305 TTGGGCAGAAATTTCAAAAGAAACTAGAAGATGC-CAAGGTGTTTTTGGTGGGATCTGGT 3363 | || | || | || ||||| || ||||| || ||| | || ||| |||| |||||| Sbjct 189243061 TCGGAAACAAGCTACAGAAGAAGCTGGAAGAGGCAAAAGCTTTTGTTGTTGGG-TCTGGT 189243003 Query 3364 GC-CTTGGGTTGTGAGTTCCTGAAGAACTTGGCTTTAATGGGAGTTGCATGCACCGAACA 3422 || |||||| ||||||||| ||||||| || ||| | ||||| ||| || ||| | Sbjct 189243002 GCGCTTGGG-TGTGAGTTCTTGAAGAATTTAGCTCTCATGGGGGTTTGTTGTGGTGAAAA 189242944 Query 3423 AGGGAAATTAACTGTGACTGATGATGATGTTATTGAGAAGAGTAATCTTAGTAGACAATT 3482 ||| || |||| | || ||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 189242943 AGGAAAGCTAACAATTACAGATGATGATGTCATTGAGAAGAGCAATCTTAGTAGGCAATT 189242884 Query 3483 CCTCTTCCGAGATTGGAACATTGGCCAGGCAAAATCCACTGTTGCTGCTGCTGCTGCAGC 3542 ||||||||| |||||||||||||| || || || || ||||| |||||||| ||||| | Sbjct 189242883 CCTCTTCCGTGATTGGAACATTGGGCAAGCCAAGTCTACTGTCGCTGCTGCAGCTGCTTC 189242824 Query 3543 ATTAATAAATCCCCAGCTTCAAATTGAAGCTCTGCAGAACCGCGTGGGTCCTGAAACTGA 3602 || || ||||| || |||| |||||||| ||||| ||||| | | |||||||| || Sbjct 189242823 TTTGATCAATCCTCACATTCACATTGAAGCACTGCAAAACCGTGCAAGCCCTGAAACAGA 189242764 Query 3603 AAATGTGTTTGATGACACTTTCTGGGAGAATCTTAGTGTAGTTATTAACGCACTTGACAA 3662 || ||| |||||||| || |||||||||||| | ||||| || | || ||||| || || Sbjct 189242763 AAGTGTATTTGATGATACATTCTGGGAGAATTTGAGTGTTGTGGTCAATGCACTAGATAA 189242704 Query 3663 TGTCAATGCAAGACTTTATGTTGATCAGAGATGCTTGTACTTTCAGAAGCCGCTGCTTGA 3722 ||| ||||| || |||| ||||||||||||| ||||| ||||| || || | | || Sbjct 189242703 TGTGAATGCCAGGATTTACATTGATCAGAGATGTTTGTATTTTCAAAAACCATTATTGGA 189242644 Query 3723 ATCAGGGACCCTTGGTGCCAAATGTAACACTCAGATGGTGATTCCCCATCTGACTGAGAA 3782 || || || || |||||||| || || ||||||||||| ||||| ||||| || ||||| Sbjct 189242643 GTCTGGAACTCTGGGTGCCAAGTGCAATACTCAGATGGTAATTCCTCATCTCACAGAGAA 189242584 Query 3783 TTATGGTGCATCAAGAGATCCTCCAGAAAAACAAGCACCAATGTGCACTTTGCACTCCTT 3842 ||||||||||||||| ||||| ||||||||||||||||| ||||| || | ||||| || Sbjct 189242583 TTATGGTGCATCAAGGGATCCACCAGAAAAACAAGCACCTATGTGTACAGTTCACTCTTT 189242524 Query 3843 CCCACATAATATTGATCATTGTTTGACATGGGCACGGTCCGAATTTGAGGGTTTGCTTGA 3902 |||||| || || |||||||| || |||||||| ||||| |||||||||||||||||||| Sbjct 189242523 CCCACACAACATCGATCATTGCTTAACATGGGCTCGGTCAGAATTTGAGGGTTTGCTTGA 189242464 Query 3903 GAAAATACCAGCTGAAGTCAACGCTTATCTCACTAATCCAAGTGAATATACGTCTGCACA 3962 ||| | ||||||||||| || |||||||| | ||||| || || || | ||||| | Sbjct 189242463 GAAGACGCCAGCTGAAGTTAATGCTTATCTGATCAATCCTAGCGACTACATATCTGCT-A 189242405 Query 3963 AGCAAAT-GCTGGTGATGCTCAAGCTAGAGACAATTTGGAGCGAATTCTCGAGTGCCTAG 4021 ||||| |||| |||||| || || || |||| |||||| || |||| || ||||| | Sbjct 189242404 TGCAAAAGGCTGCTGATGCACAGGCCAGGGACACTTTGGATCGTGTTCTTGAATGCCTCG 189242345 Query 4022 ATCGTGAAAGCTGTCAAACTTTTGAAGATTGCATTGCATGGGCACGTCTCAAGTA 4076 || || || ||| | || |||||||| ||||| | ||||| || || | ||| Sbjct 189242344 ATAAGGAGAGATGTGATACATTTGAAGACTGCATAACCTGGGCTCGCCTGAGGTA 189242290 Score = 302 bits (163), Expect = 1e-78 Identities = 609/827 (74%), Gaps = 19/827 (2%) Strand=Plus/Minus Query 2118 TTATTTTA-ATGCAGGCTGTGGTACTTACTAACGCCAGCTTAGAGGAAGC-ACTGGAATT 2175 ||| |||| |||||||||| ||| |||| | |||||||||| | || ||| ||||| Sbjct 189244522 TTACTTTATCTGCAGGCTGTTGTATTTACAGATATCAGCTTAGAGAAGGCTACT-GAATT 189244464 Query 2176 CAGTGATTACTGCCACAATCATCAACCCCCTATTGCATTTATCAGAACTGAAGTGAGGGG 2235 ||||||||| || | ||| || || || ||||| || |||| | ||||||| | || Sbjct 189244463 TGATGATTACTGTCATACTCACCAGCCTCCAATTGCTTTCATCAAAGCTGAAGTTCGAGG 189244404 Query 2236 TCTATTTGGTTATGTCTTCTGTGATTTTGGCCCCGAGTTCACAGTTTTTGATGTAGATGG 2295 || |||||| ||| || ||||| |||||||| | || |||| |||||| ||||| Sbjct 189244403 CCTTTTTGGTAGTGTGTTTTGTGACTTTGGCCCTCAATTTGTAGTTGCTGATGTTGATGG 189244344 Query 2296 TGAAGAACCTCATACAGGCATTATTGCATCAATTAGTAATGATAATCCTGCCCTGATTTC 2355 ||| || ||||| |||| || ||||| || ||||| ||||| | ||||| || | || Sbjct 189244343 TGAGGATCCTCACTCAGGAATCATTGCGTCTATTAGCAATGACGACCCTGCTCTTGTGTC 189244284 Query 2356 GTGTGTGGATGATGAAAGGCTTGAGTTTCAGGATGGGGACCTAGTTGTGTTCTCAGAAGT 2415 ||| | |||||||| ||||| |||||||| ||||||||| ||||| | || || ||||| Sbjct 189244283 ATGTATTGATGATGAGAGGCTCGAGTTTCAAGATGGGGACTTAGTTATATTTTCTGAAGT 189244224 Query 2416 ACAGGGCATGACAGAACTTAATGATGGCAAGCCAAGAAAAATTAGTAGTGCAAGACCTTA 2475 || ||||||| ||| || |||||||| | ||| |||||||| | |||||||| || || Sbjct 189244223 GCATGGCATGATAGAGCTGAATGATGGGAGGCCTAGAAAAATAAAAAGTGCAAGGCCATA 189244164 Query 2476 TTCATTTACCCTCGACGAGGACACAACAAACTTTGGCCGC-TACGAGAGAGGTGGTATTG 2534 ||||||||| | || | || || ||| | | || | || || || | ||| ||||| | Sbjct 189244163 TTCATTTACTATTGAAAACGATACCACAGAGTATG-CAGCTTATGAAAAAGGGGGTATCG 189244105 Query 2535 TGACTCAGGTGAAGCAACCCAAAATTTTGAACTTCAAGACATTGAGGGAAGCTATCACAG 2594 | |||||||| ||| | || ||| | ||||| |||||| || || | |||| || | | Sbjct 189244104 TCACTCAGGTCAAGGAGCCTAAAGTGTTGAAATTCAAGCCACTGCGACAAGCAATTAAGG 189244045 Query 2595 ATCCCGGCGATTTTCTTCTTAGTGATTTCTCAAAGTTTGACCGCCCACCTCTGCTGCATT 2654 |||| || || |||||||| ||||| ||||| |||||| |||| |||||| | | || | Sbjct 189244044 ATCCTGGTGACTTTCTTCTGAGTGACTTCTCCAAGTTTAACCGTCCACCTATTTTACACT 189243985 Query 2655 TGGCATTCCAAGCATTAGACAAGTTCAGATCAG-ATTTGGCACGGTTTCCCC-TTGCTGG 2712 |||| || || ||| |||| | ||| || | || || ||| |||||| ||||||| Sbjct 189243984 TGGCTTTTCAGGCACTAGATAGGTTTGTGTCTGTATCAGG-ACG-TTTCCCTGTTGCTGG 189243927 Query 2713 TTCAGAAGATGATGCTCAGAGACTGATCTCTATTGCCACAAATTTAAATGAAAGCAATGG 2772 || || || |||||||||| || || || ||| || | | ||||| |||| | Sbjct 189243926 ATCTGAGGAAGATGCTCAGAAGCTAATATCATTTGTGAC---TG-ACATGAA--CAATAG 189243873 Query 2773 GAAGGTC---AAACTGGACGACATAAACCCAAAACTTTTACAGCAGTTTTCTCATGGTGC 2829 || ||||| || || || | | |||||| | ||| | ||| | |||||| Sbjct 189243872 TCTTGTTGGAAAACTTGAGGAGATTGATCAGAAACTTCTTCAGAAATTTGCATTTGGTGC 189243813 Query 2830 ACGTGCCGAACTTAATCCCATGGCTGCTATGTTTGGTGGTATTGTCGGGCAGGAGGTTGT 2889 | | || | || || || ||||| ||||||||||| |||||||| ||||| || ||||| Sbjct 189243812 AAGGGCTGTGCTAAACCCAATGGCGGCTATGTTTGGGGGTATTGTTGGGCAAGAAGTTGT 189243753 Query 2890 GAAGGCTTGCTCTGGGAAGTTTCATCCGCTTCACCAGGTTA-TAAAT 2935 ||||||||||||||||||||| ||||| ||| | ||||| | ||||| Sbjct 189243752 GAAGGCTTGCTCTGGGAAGTTCCATCCACTTTATCAGGTCAGTAAAT 189243706 Score = 150 bits (81), Expect = 5e-33 Identities = 192/246 (78%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 591 ATGTATTTCCATGTGAATGCAGCTAAGAATCTTATACTTGCTGGTGTGAAGTCTGTGACT 650 |||| ||||| | | | |||||| ||||| |||| ||||| |||||||||||||| ||| Sbjct 189245837 ATGTGTTTCC-T-T-ATTGCAGCAAAGAACATTATTCTTGCGGGTGTGAAGTCTGTTACT 189245781 Query 651 CTACATGATGAAGGAGAAGTGCAGTTGTGGGATTTGTCGAGCAATTTTATTTTCTCAGAG 710 | || ||||||||| | ||| ||||||||||| |||| ||||||||||| ||| ||||| Sbjct 189245780 TTGCACGATGAAGGAAATGTGGAGTTGTGGGATCTGTCTAGCAATTTTATCTTCACAGAG 189245721 Query 711 -AGTGATGTTGGTAAGAACAGAGCACTTGCTTCTGTTCAAAAGCTACAAGAGCTCAACAA 769 || || |||| ||||| || |||||||||||||| || ||| | |||||||| ||||| Sbjct 189245720 GAG-GACATTGGGAAGAATAGGGCACTTGCTTCTGTCCAGAAGTTGCAAGAGCTAAACAA 189245662 Query 770 TGCTGTAGTTGTCTCAAGTTTGACTACAAAATTGACTAAGGAAAAGCTTTCTGATTTCCA 829 | |||| || |||| | ||||| |||||||| ||| | ||||| |||| || Sbjct 189245661 TTCTGTCATTATCTCCACGTTGACGGATGCTTTGACTAAAGAACAACTTTCCAATTTTCA 189245602 Query 830 GGTAAG 835 || ||| Sbjct 189245601 GGCAAG 189245596 Score = 100 bits (54), Expect = 5e-18 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 282 TGATATTGATGAGGATCTCCACAGCAGACAGCTTGCTGTGTATGGCCGTGAAACTATGCG 341 |||||| || |||||||| |||||| | || ||||| || ||||| |||||||||||||| Sbjct 189246850 TGATATCGACGAGGATCTTCACAGCCGTCAACTTGCCGTCTATGGTCGTGAAACTATGCG 189246791 Query 342 GCGGCTTTTTGCTTCTAATGTTCTTATATCGGGGATCCAAGGGCTTGGTGCTGAAATAGG 401 |||||||||| |||||| |||| |||| || | ||||| ||||| ||||||| || Sbjct 189246790 TAGGCTTTTTGCGTCTAATATTCTCGTATCTGGCCTGCAAGGTCTTGGCGCTGAAACTGG 189246731 Query 402 TAT 404 ||| Sbjct 189246730 TAT 189246728 >Pepper1.55ch07 Length=231911496 Score = 76.8 bits (41), Expect = 8e-11 Identities = 95/121 (79%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 3193 ATTTG-TT-T-ACAGTTCTTTTAC-TTCGACTCCCTGGAATCACTTCCAACTGAGCCACT 3248 ||||| || | |||||| | ||| || ||||| | ||||| |||||||||| ||| | Sbjct 185756256 ATTTGTTTATGACAGTTTCTCTACTTTTGACTCTATTGAATCTTTTCCAACTGAACCATT 185756197 Query 3249 GGATCCTAGTGATTTGAAGCCATTAAATACTCGGTATGATGCCCAAATCTCAGTCTTTGG 3308 |||||| | |||||||||||| || |||| || |||||||| ||||||||| | ||| | Sbjct 185756196 GGATCCAAATGATTTGAAGCCCTTGAATAGTCATTATGATGCTCAAATCTCAATTTTTCG 185756137 Query 3309 G 3309 | Sbjct 185756136 G 185756136 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11137912770635 Database: Capsicum annuum cv CM334 genome chromosomes (release 1.55) Posted date: Mar 21, 2024 3:36 PM Number of letters in database: 2,753,501,687 Number of sequences in database: 12 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5