BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= Untitled_sequence

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch05                                                             350     6e-95


>SL4.0ch05 
Length=65269487

 Score = 350 bits (189),  Expect = 6e-95
 Identities = 209/217 (96%), Gaps = 8/217 (4%)
 Strand=Plus/Plus

Query  1         GTTCGATTTCTCGAATACTACAACTCGGTGGCCTTCTCTTTGTAGCTCACGCGTCGTCAC  60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60522940  GTTCGATTTCTCGAATACTACAACTCGGTGGCCTTCTCTTTGTAGCTCACGCGTCGTCAC  60522999

Query  61        AAGACCCGATGGGCCGGCTCCGATCACTGCTACTTTTCTCGACT--------AGAGGAGA  112
                 ||||||||||||||||||||||||||||||||||||||||||||        ||||||||
Sbjct  60523000  AAGACCCGATGGGCCGGCTCCGATCACTGCTACTTTTCTCGACTCCGCCATGAGAGGAGA  60523059

Query  113       CTATTGAGCTCAAAAAACAGAGTTCTGCACTGAGTTTTTTATATTATAAAGACAAACTGA  172
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60523060  CTATTGAGCTCAAAAAACAGAGTTCTGCACTGAGTTTTTTATATTATAAAGACAAACTGA  60523119

Query  173       ATTGTTCGATTTTCAAAAAACTAATAAATCTTTGTGT  209
                 |||||||||||||||||||||||||||||||||||||
Sbjct  60523120  ATTGTTCGATTTTCAAAAAACTAATAAATCTTTGTGT  60523156


 Score = 148 bits (80),  Expect = 2e-34
 Identities = 96/104 (92%), Gaps = 0/104 (0%)
 Strand=Plus/Plus

Query  1         GTTCGATTTCTCGAATACTACAACTCGGTGGCCTTCTCTTTGTAGCTCACGCGTCGTCAC  60
                 ||||||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct  60528829  GTTCGATTTCTCGAACACTACAACTCGGTGACCTTCTCTTTGCAGCTCACGCGCCGTCAC  60528888

Query  61        AAGACCCGATGGGCCGGCTCCGATCACTGCTACTTTTCTCGACT  104
                 || |||||||| |||||||||||| |||||||||||||| ||||
Sbjct  60528889  AATACCCGATGCGCCGGCTCCGATTACTGCTACTTTTCTGGACT  60528932



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 142418582124


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5