BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: N.tabacum BX Genome
           420,216 sequences; 3,758,148,345 total letters



Query= Untitled_sequence

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Ntab-BX_AWOK-SS194                                                    152     2e-34
Ntab-BX_AWOK-SS384372                                                 130     1e-27


>Ntab-BX_AWOK-SS194 
Length=578114

 Score = 152 bits (82),  Expect = 2e-34
 Identities = 132/157 (84%), Gaps = 0/157 (0%)
 Strand=Plus/Minus

Query  282     TTGGAGCTTACCCAAATGTACAGAACCTGTTTGGTGAGCTAGGGATTAATGATAGATTAC  341
               |||| |||||||||||| | |||||||||||||| || ||||||||||| ||| |||| |
Sbjct  369197  TTGGGGCTTACCCAAATATGCAGAACCTGTTTGGAGAACTAGGGATTAACGATCGATTGC  369138

Query  342     AGTGGAAGGAGCACTCTATGATATTTGCCATGCCAAACAAGCCTGGTGAATTTAGTCGCT  401
               |||||||||| || || ||||||||||| ||||| |||||||| || ||||| || ||||
Sbjct  369137  AGTGGAAGGAACATTCAATGATATTTGCGATGCCTAACAAGCCAGGGGAATTCAGCCGCT  369078

Query  402     TCGACTTCCCAGATGTTCTGCCTGCACCATTAAATGG  438
               | || || || || | ||| ||||| |||||||||||
Sbjct  369077  TTGATTTTCCTGAAGCTCTTCCTGCGCCATTAAATGG  369041


 Score = 91.6 bits (49),  Expect = 5e-16
 Identities = 76/89 (85%), Gaps = 1/89 (1%)
 Strand=Plus/Minus

Query  437     GGAATTTGGGCCATCTTGAGGAACAATGAAATGCTGACATGGCCTGAGAAAGTTAAATTT  496
               ||||||| ||||||  | | ||||||||||||||| |||||||| || ||||| ||||||
Sbjct  368740  GGAATTTTGGCCATACTAAAGAACAATGAAATGCTTACATGGCCCGAAAAAGTCAAATTT  368681

Query  497     GCAATCGGACTCTTGCCTGCAATG-TTGG  524
               || || ||||||||||| |||||| ||||
Sbjct  368680  GCTATTGGACTCTTGCCAGCAATGCTTGG  368652


 Score = 86.1 bits (46),  Expect = 2e-14
 Identities = 78/94 (83%), Gaps = 0/94 (0%)
 Strand=Plus/Minus

Query  132     CAGGTTTGGCTGGTCTATCCACTGCAAAGTATCTGGCTGATGCTGGTCACAATCCCATTT  191
               ||||||||| |||| | || || ||||| |||||||| |||||||||||||| || || |
Sbjct  370193  CAGGTTTGGGTGGTTTGTCTACAGCAAAATATCTGGCAGATGCTGGTCACAAACCGATAT  370134

Query  192     TGCTTGAAGCCAGAGACGTTCTTGGTGGAAAGGT  225
               |||| || || ||||| || || |||||||||||
Sbjct  370133  TGCTGGAGGCAAGAGATGTCCTAGGTGGAAAGGT  370100


>Ntab-BX_AWOK-SS384372 
Length=5634

 Score = 130 bits (70),  Expect = 1e-27
 Identities = 128/157 (82%), Gaps = 0/157 (0%)
 Strand=Plus/Minus

Query  282   TTGGAGCTTACCCAAATGTACAGAACCTGTTTGGTGAGCTAGGGATTAATGATAGATTAC  341
             |||| |||||||||||| | |||||| ||||||| || |||||||| || ||| | || |
Sbjct  1761  TTGGGGCTTACCCAAATATGCAGAACTTGTTTGGAGAACTAGGGATAAACGATCGGTTGC  1702

Query  342   AGTGGAAGGAGCACTCTATGATATTTGCCATGCCAAACAAGCCTGGTGAATTTAGTCGCT  401
             |||||||||| || || ||||||||||| ||||| |||||||| || || || || ||||
Sbjct  1701  AGTGGAAGGAACATTCAATGATATTTGCGATGCCTAACAAGCCAGGGGAGTTCAGCCGCT  1642

Query  402   TCGACTTCCCAGATGTTCTGCCTGCACCATTAAATGG  438
             | || || || || | ||| ||||| |||||||||||
Sbjct  1641  TTGATTTTCCTGAAGCTCTTCCTGCGCCATTAAATGG  1605


 Score = 91.6 bits (49),  Expect = 5e-16
 Identities = 79/94 (84%), Gaps = 0/94 (0%)
 Strand=Plus/Minus

Query  132   CAGGTTTGGCTGGTCTATCCACTGCAAAGTATCTGGCTGATGCTGGTCACAATCCCATTT  191
             ||||||||| |||| | || || ||||| ||||||||||||||||||||||| || || |
Sbjct  2775  CAGGTTTGGGTGGTTTGTCTACAGCAAAATATCTGGCTGATGCTGGTCACAAACCGATAT  2716

Query  192   TGCTTGAAGCCAGAGACGTTCTTGGTGGAAAGGT  225
             |||| || || ||||| || || |||||||||||
Sbjct  2715  TGCTGGAGGCAAGAGATGTCCTAGGTGGAAAGGT  2682


 Score = 80.5 bits (43),  Expect = 1e-12
 Identities = 74/89 (83%), Gaps = 1/89 (1%)
 Strand=Plus/Minus

Query  437   GGAATTTGGGCCATCTTGAGGAACAATGAAATGCTGACATGGCCTGAGAAAGTTAAATTT  496
             ||||||| ||||||  | | |||||| |||||||| || ||||| || ||||| ||||||
Sbjct  1314  GGAATTTTGGCCATACTAAAGAACAACGAAATGCTTACGTGGCCCGAAAAAGTCAAATTT  1255

Query  497   GCAATCGGACTCTTGCCTGCAATG-TTGG  524
             || || ||||||||||| |||||| ||||
Sbjct  1254  GCTATTGGACTCTTGCCAGCAATGCTTGG  1226



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 1880262016230


  Database: N.tabacum BX Genome
    Posted date:  Mar 21, 2024  3:15 PM
  Number of letters in database: 3,758,148,345
  Number of sequences in database:  420,216



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5