BLASTP 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Stuberosum_proteins.ITAG1.wfunct.fasta
           35,004 sequences; 12,505,031 total letters



Query= Untitled_sequence

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Sotub03g018250.1.1TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)                    259     2e-90
Sotub11g006560.1.1TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)                    153     4e-48
Sotub11g011940.1.1TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)                    127     9e-39
Sotub11g005600.1.1TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)                    104     2e-29


>Sotub03g018250.1.1 TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)
Length=135

 Score = 259 bits (663),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 125/136 (92%), Positives = 129/136 (95%), Gaps = 1/136 (1%)

Query  39   MAEANSAVTGNTNFGVHRKLLHNQGNEVETNRIWGDKCSKSDIVINQGPTAPLPSGIPTY  98
            MAEANSAVTGNTN G HRKLL NQGNEVETNRIWGDKCSKSDIVINQGPTAPLPSGIPTY
Sbjct  1    MAEANSAVTGNTNVGPHRKLL-NQGNEVETNRIWGDKCSKSDIVINQGPTAPLPSGIPTY  59

Query  99   TVEIMNVCVTGCDISSIHLKCGWFSSARLINPRIFKRLRFDDCLVNDGKPLINGHTISFQ  158
            TVEIMNVCV+GCDIS IHL CGWFSSARLINPRIFKRL FDDCLVNDGKPLINGHTISFQ
Sbjct  60   TVEIMNVCVSGCDISGIHLSCGWFSSARLINPRIFKRLHFDDCLVNDGKPLINGHTISFQ  119

Query  159  YANTYPYPLTVSSVIC  174
            YANT+ YPL+VSSV+C
Sbjct  120  YANTFRYPLSVSSVVC  135


>Sotub11g006560.1.1 TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)
Length=162

 Score = 153 bits (387),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 69/116 (59%), Positives = 89/116 (77%), Gaps = 1/116 (1%)

Query  60   HNQGNEVETNRIWGDKCSKSDIVINQGPTAPLPSGIPTYTVEIMNVCVTG-CDISSIHLK  118
            ++ G +   NRI    CS   I +NQGP+A LPSGIPTYTV ++N C +G C IS+IHL 
Sbjct  47   NSTGGDGSENRIGEGTCSNKFIQVNQGPSASLPSGIPTYTVIVLNACFSGSCSISNIHLS  106

Query  119  CGWFSSARLINPRIFKRLRFDDCLVNDGKPLINGHTISFQYANTYPYPLTVSSVIC  174
            CGWFSSARLINP+IF+RL ++DCLVNDG+PL  G +++F YANT+PY L VSS++C
Sbjct  107  CGWFSSARLINPKIFRRLNYNDCLVNDGQPLTAGQSLTFSYANTFPYKLAVSSIVC  162


>Sotub11g011940.1.1 TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)
Length=100

 Score = 127 bits (320),  Expect = 9e-39, Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 75/100 (75%), Gaps = 3/100 (3%)

Query  76   CSKSDIVINQGPTAPLPSGIPTYTVEIMNVCVT-GCDISSIHLKCGWFSSARLINPRIFK  134
            C++  I+INQGP   LPSGIP Y V I N+CV  GC   +IH+ CGWFSSARLINP+IF+
Sbjct  2    CTEGSILINQGPAGTLPSGIPLYVVIIQNMCVAKGC--GNIHMTCGWFSSARLINPKIFR  59

Query  135  RLRFDDCLVNDGKPLINGHTISFQYANTYPYPLTVSSVIC  174
            RL  +DCLVNDGKPL  G +++F YANT+PY + V SV C
Sbjct  60   RLGKNDCLVNDGKPLGPGSSLTFAYANTFPYHIAVKSVTC  99


>Sotub11g005600.1.1 TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)
Length=115

 Score = 104 bits (259),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 50/99 (51%), Positives = 67/99 (68%), Gaps = 3/99 (3%)

Query  76   CSKSDIVINQGPTAPLPSGIPTYTVEIMNVCVTGCDISSIHLKCGWFSSARLINPRIFKR  135
            C KS I + QG    +  GIP Y V+I+N C + CD  SIH+ CG F+S +LINP  F+R
Sbjct  19   CPKSRIQVTQGAIGTI-GGIPQYRVQIVNGCESICD--SIHVSCGQFASTKLINPWTFRR  75

Query  136  LRFDDCLVNDGKPLINGHTISFQYANTYPYPLTVSSVIC  174
            L  +DCLVN+G P+ +G  ISF Y NT+ YP+TV+S +C
Sbjct  76   LAINDCLVNNGAPMKSGQVISFTYTNTFKYPMTVTSSMC  114



Lambda      K        H        a         alpha
   0.320    0.135    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 761342366


  Database: Stuberosum_proteins.ITAG1.wfunct.fasta
    Posted date:  Jun 25, 2024  1:46 PM
  Number of letters in database: 12,505,031
  Number of sequences in database:  35,004



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40