BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome CDS (ITAG release 4.0)
           34,075 sequences; 34,993,605 total letters



Query= Untitled_sequence

Length=1932
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc00g500183.1.1                                                    313     3e-84
Solyc11g020785.1.1                                                    231     1e-59


>Solyc00g500183.1.1 
Length=306

 Score = 313 bits (169),  Expect = 3e-84
 Identities = 169/169 (100%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  1    ATGACGACTAAGAACAGGCAAATCCAAAATTTCACTTCGAATTTCGGACCTCAACATCCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACGACTAAGAACAGGCAAATCCAAAATTTCACTTCGAATTTCGGACCTCAACATCCT  60

Query  61   GCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGCGCG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGCGCG  120

Query  121  GAACCACATATTGGATTACTCCAGTGCGGCACGAAGCCGCTGATGCCGA  169
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GAACCACATATTGGATTACTCCAGTGCGGCACGAAGCCGCTGATGCCGA  169


 Score = 254 bits (137),  Expect = 2e-66
 Identities = 137/137 (100%), Gaps = 0/137 (0%)
 Strand=Plus/Plus

Query  1796  TGATTGGAAAGGAGGGCGCCTGGGTATGTTATAGAAAGGGGAGGCGGAAGCATCGAATGG  1855
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  170   TGATTGGAAAGGAGGGCGCCTGGGTATGTTATAGAAAGGGGAGGCGGAAGCATCGAATGG  229

Query  1856  CGAAGAGAGGCGGCTCGGCAGGGAAGGAATGGGAAATCGTCAAGGATGACTTCTTTGTTG  1915
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  230   CGAAGAGAGGCGGCTCGGCAGGGAAGGAATGGGAAATCGTCAAGGATGACTTCTTTGTTG  289

Query  1916  GCGGAACGAAGGGCTAA  1932
             |||||||||||||||||
Sbjct  290   GCGGAACGAAGGGCTAA  306


>Solyc11g020785.1.1 
Length=516

 Score = 231 bits (125),  Expect = 1e-59
 Identities = 131/134 (98%), Gaps = 0/134 (0%)
 Strand=Plus/Plus

Query  1633  GGAGAGTGGGCAGAAGAGAAGGAGGTCCTCATACGGAGTCGCACACTTACTTGAGCAGTG  1692
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  383   GGAGAGTGGGCAAAAGAGAAGGAGGTCCTCATACGGAGTCGCACACTTACTTGAGCAATG  442

Query  1693  CGGGAGACTGGGGAATGGGTCGAATAAACTCCCCTGGGGCCGGAAAAATAACAGACGAAG  1752
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  443   CAGGAGACTGGGGAATGGGTCGAATAAACTCCCCTGGGGCCGGAAAAATAACAGACGAAG  502

Query  1753  CTTTACTTAGATAG  1766
             ||||||||||||||
Sbjct  503   CTTTACTTAGATAG  516



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 65009190430


  Database: Tomato Genome CDS (ITAG release 4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 34,993,605
  Number of sequences in database:  34,075



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5