TBLASTN 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: S. pimpinellifolium CDS LA1589 34,727 sequences; 35,973,059 total letters Query= Untitled_sequence Length=532 Score E Sequences producing significant alignments: (Bits) Value Sopim04g079840.0.1LIM domain-binding protein (AHRD V1 *--* B0WXP3... 642 0.0 Sopim02g089930.0.1Homeobox protein LIM-3 (Fragment) (AHRD V1 *---... 588 0.0 Sopim05g052910.0.1Actin-binding LIM protein 1 (AHRD V1 *--- ABLM1... 504 1e-175 Sopim03g079910.0.1Zinc ion binding protein (AHRD V1 **-- D7LDT1_A... 491 6e-170 Sopim01g105180.0.1LIM zinc-binding protein (AHRD V1 *--* D6TLS9_9... 192 8e-56 Sopim01g105210.0.1Zinc ion binding protein (AHRD V1 **-- B6SPK3_M... 117 2e-31 Sopim01g105200.0.1Zinc ion binding protein (AHRD V1 ***- B6SPK3_M... 101 6e-25 Sopim04g079850.0.1Pentatricopeptide repeat-containing protein (AH... 103 6e-23 >Sopim04g079840.0.1 LIM domain-binding protein (AHRD V1 *--* B0WXP3_CULQU); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type Length=1461 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/532 (62%), Positives = 401/532 (75%), Gaps = 48/532 (9%) Frame = +1 Query 1 MGWFNKIFKGSNQRLRVGNNKHNHNVYYDNYPTASHDDEPSAADTDADNDEPHHTQEPST 60 MGW NKIF+GS+ ++ G YD + H +E +PST Sbjct 1 MGWLNKIFRGSSHKISEGQ--------YD-WRCEGHTEE----------------DDPST 105 Query 61 SEDNTSNDQENEDIDRAIALSLLEENQEQTSISGKYSMPVDEDEQLARALQESMVVGNSP 120 +ED+ S E E+IDRAIA+SL EE Q+ + S + EDEQLARALQES+ V + P Sbjct 106 AEDSWS---EIEEIDRAIAISLSEEEQKGKIVIDSESQ-LKEDEQLARALQESLNVESPP 273 Query 121 RHKSGSTYDNGNAYGAGDLYGNGHMYGGGNVYANGDIYYPRPITFQMDFRICAGCNMEIG 180 +H S + + GN Y NG+ Y+P P + FR+CAGC+ EIG Sbjct 274 QHVSRNDHGGGNVY------------------GNGNFYHPVPFPYSASFRVCAGCSTEIG 399 Query 181 HGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHFIP 240 HGRFL+C+ ++WHPECFRC+ C+QPIS+YEFS SGNYP+HK CY+E YHPKCDVC HFIP Sbjct 400 HGRFLSCMGAVWHPECFRCHACNQPISDYEFSMSGNYPYHKTCYKEHYHPKCDVCKHFIP 579 Query 241 TNHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELNDGRKLCLECLDS 300 TN AGLIEYRAHPFW QKYCP HEHD TPRCCSCERMEPR+TRY+ L+DGRKLCLECLDS Sbjct 580 TNAAGLIEYRAHPFWSQKYCPFHEHDGTPRCCSCERMEPRDTRYIALDDGRKLCLECLDS 759 Query 301 AVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEKNGHYHMPETRGL 360 A+MDT QCQPLY IQ FYEGLNMKVEQ+VPLLLVERQALNEA +GE++G++HMPETRGL Sbjct 760 AIMDTSQCQPLYYDIQEFYEGLNMKVEQKVPLLLVERQALNEAMDGERHGYHHMPETRGL 939 Query 361 CLSEEQTVSTVRKRSKHGTGKWAGNI-TEPYKLTRQCEVTAILILFGLPRLLTGSILAHE 419 CLSEEQT+ST+++R + G G ++ TEPYKLTR+CEVTAILIL+GLPRLLTGSILAHE Sbjct 940 CLSEEQTISTIQRRPRIGAGNRVMDMRTEPYKLTRRCEVTAILILYGLPRLLTGSILAHE 1119 Query 420 MMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAELaagstnsnaassssssQGLKKGPRS 479 MMHAW+RL+G+RTLSQDVEEGICQV+AH WL+ ++A+ S+++ AS+SS K+G RS Sbjct 1120 MMHAWLRLRGYRTLSQDVEEGICQVLAHMWLETQIASISSSNGGASTSSGMSSSKQGIRS 1299 Query 480 QYERKLGEFFKHQIESDASPVYGDGFRAGRLAVHKYGLRKTLEHIQMTGRFP 531 +ERKLG+FFKHQIESD SP+YG+GFRAG AV KYGL +TL+HI+MTG FP Sbjct 1300 PFERKLGDFFKHQIESDTSPIYGNGFRAGNQAVLKYGLERTLDHIRMTGTFP 1455 >Sopim02g089930.0.1 Homeobox protein LIM-3 (Fragment) (AHRD V1 *--- O42286_DANRE); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type Length=1548 Score = 588 bits (1515), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/542 (57%), Positives = 385/542 (71%), Gaps = 39/542 (7%) Frame = +1 Query 1 MGWFNKIFKGSNQRLRVG--NNKHNHNVYYDNYPTASHDDEPSAADTDADNDEPHHTQEP 58 MGW KIF GS R+ G ++ + Y+ Y + + P Sbjct 1 MGWLEKIFGGSTHRISGGQYHSGYEGAQYHGGYDGGQYHSGHEGEQYHGGYQDSTTWDGP 180 Query 59 STSEDNTSNDQENEDIDRAIALSLLEENQEQTSISGKYSMP-VDEDEQLARALQESMVVG 117 +TS D +S D + E+IDRAIALSL EE+Q+ + S P ++EDE LA+ALQES+ V Sbjct 181 TTSVDESS-DFDKEEIDRAIALSLAEEDQKGKKVIE--SEPHLEEDEALAKALQESLNV- 348 Query 118 NSPRHKSGSTYDNGNAYGAGDLYGNGHMYGGGNVYANGDIYYPRPITFQMDFRICAGCNM 177 S YD G+ + + +F +R+CAGCN Sbjct 349 ESSPPPPPPRYDYGSPFPS------------------------LSYSFPYGYRVCAGCNA 456 Query 178 EIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSH 237 EIGHGR+L+C+ ++WHPECFRC+GC+QPIS+YEFS S N P+HK+CY+E++HPKCDVC Sbjct 457 EIGHGRYLSCMGAVWHPECFRCHGCNQPISDYEFSMSDNRPYHKSCYKEQHHPKCDVCKS 636 Query 238 FIPTNHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELNDGRKLCLEC 297 FIPTN AGLIEYRAHPFW+QKYCPSHE D TPRCCSCERMEP + RY+ L DGRKLCLEC Sbjct 637 FIPTNPAGLIEYRAHPFWLQKYCPSHETDGTPRCCSCERMEPVDARYLILEDGRKLCLEC 816 Query 298 LDSAVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEKNGHYHMPET 357 LDS++MDT +CQPLYL+IQ FYEGLNMKVEQ++PLLLVERQALNEA EGEKNGH+HMPET Sbjct 817 LDSSIMDTHECQPLYLEIQEFYEGLNMKVEQQIPLLLVERQALNEAMEGEKNGHHHMPET 996 Query 358 RGLCLSEEQTVSTVRKRSKHGTGKWAGNITEPYKLTRQCEVTAILILFGLPRLLTGSILA 417 RGLCLSEEQT+S++ +R + G + TEPY+L R CEVTAILIL+GLPRLLTGSILA Sbjct 997 RGLCLSEEQTISSISRRPRIGGYRILDMFTEPYRLIRHCEVTAILILYGLPRLLTGSILA 1176 Query 418 HEMMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAELa--------agstnsnaasssss 469 HEMMHAW+RLKG+ +LS +VEEGICQV+AH WLD+E+ + ST+++++SSSS Sbjct 1177 HEMMHAWLRLKGYPSLSPEVEEGICQVLAHMWLDSEIIAGSGSTSTSASTSASSSSSSSP 1356 Query 470 sQGLKKGPRSQYERKLGEFFKHQIESDASPVYGDGFRAGRLAVHKYGLRKTLEHIQMTGR 529 S KKG RS +E+KLG+FFKHQIESD S YGDGFR G AV KYGL+ TL+HI++TG Sbjct 1357 STSSKKGKRSDFEKKLGDFFKHQIESDTSAAYGDGFREGNKAVLKYGLKTTLDHIRLTGT 1536 Query 530 FP 531 +P Sbjct 1537 YP 1542 >Sopim05g052910.0.1 Actin-binding LIM protein 1 (AHRD V1 *--- ABLM1_MOUSE); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type Length=1515 Score = 504 bits (1299), Expect = 1e-175, Method: Compositional matrix adjust. Identities = 263/487 (54%), Positives = 336/487 (69%), Gaps = 40/487 (8%) Frame = +1 Query 50 DEPHHTQEPSTS-EDNTSNDQENEDIDRAIALSLLEENQEQTSISGKYSMPVDEDEQLAR 108 DE + P+ S +DN+ ++E E++DRAIALSL E+ + Y D+DE LAR Sbjct 160 DENMVWRAPARSMDDNSRTNKEKEELDRAIALSLAEDLRRPKG----YRWRTDQDEDLAR 327 Query 109 ALQESMVVGNSPRHKSGSTYDNGNAYGAGDLYGNGHMYGGGNVYANGDIYYPRPITFQMD 168 +LQ DN N+ Y YA + Y P Sbjct 328 SLQ-----------------DNSNSSSHPPKYAPS--------YAPWE-YNPN------S 411 Query 169 FRICAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERY 228 +R C+GCN +I G +L C+ + +HPECF C C PI+EYEFS SGN +HK+C++E Sbjct 412 YRKCSGCNKDIISGNYLGCMETFFHPECFLCRACGVPITEYEFSLSGNNTYHKSCFKEMT 591 Query 229 HPKCDVCSHFIPTNHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELN 288 HPKC+VC FIPTN AGLIEYR HPFW QKYCP+HE+D T RCCSCER+E RN RY+ L Sbjct 592 HPKCEVCHQFIPTNGAGLIEYRCHPFWSQKYCPAHENDNTKRCCSCERLESRNARYMSLG 771 Query 289 DGRKLCLECLDSAVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEK 348 DGR LCLEC++SA+MDT CQPLY I+++YEG+NMK++Q+VP+LLVER ALNEA EGEK Sbjct 772 DGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMNMKIDQQVPMLLVERHALNEAIEGEK 951 Query 349 NGHYHMPETRGLCLSEEQTVSTVRKRSKHGTGKWAGNITEPYKLTRQCEVTAILILFGLP 408 +G +HMPETRGLCLSEEQTV+++ +R K G G T P KL R+CEVTAIL+++GLP Sbjct 952 HGLHHMPETRGLCLSEEQTVTSILRRPKFGGRGLIGIRTHPQKLIRRCEVTAILVIYGLP 1131 Query 409 RLLTGSILAHEMMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAEL---aagstnsnaas 465 RLLTG+ILAHE+MHAW+RLKG+R L+ +VEEGICQV++H WL++E+ + +++ AS Sbjct 1132 RLLTGAILAHELMHAWLRLKGYRNLTPEVEEGICQVLSHMWLESEVVPGSRNMPSTSTAS 1311 Query 466 sssssQGLKKGPRSQYERKLGEFFKHQIESDASPVYGDGFRAGRLAVHKYGLRKTLEHIQ 525 SSS+ KKG +SQ E KLGEFF HQI DASP YG GFRA AV+KYGLR TL+HI Sbjct 1312 SSSTWSSSKKGGKSQAESKLGEFFMHQIAHDASPAYGGGFRAAYAAVNKYGLRSTLDHIH 1491 Query 526 MTGRFPV 532 +TG FP+ Sbjct 1492 LTGNFPL 1512 >Sopim03g079910.0.1 Zinc ion binding protein (AHRD V1 **-- D7LDT1_ARALY); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type Length=1650 Score = 491 bits (1265), Expect = 6e-170, Method: Compositional matrix adjust. Identities = 269/535 (50%), Positives = 339/535 (63%), Gaps = 62/535 (12%) Frame = +1 Query 1 MGWFNKIFKGSNQRLRVGNNKHNHNVYYDNYPTASHDDEPSAADTDADNDEPHHTQEPS- 59 M W KIFKG N+ L P DE + P+ Sbjct 220 MKWLTKIFKG-NRGL------------------------PRGQQPQFLGDENMVWRAPAR 324 Query 60 TSEDNTSNDQENEDIDRAIALSLLEENQEQTSISGKYSMPVDEDEQLARALQESMVVGNS 119 T +D++ +E E++D A A+SL E+ + Y D DE L R+L + + Sbjct 325 TLDDHSKASKEKEELDHATAVSLSEDLKRPG-----YKCRTDNDEDLERSLDHDLSSSSY 489 Query 120 PRHKSGSTYDNGNAYGAGDLYGNGHMYGGGNVYANGDIYYPRPITFQMDFRICAGCNMEI 179 P + Y PR +RIC GC+ +I Sbjct 490 PPYPPPYAPSYAPWE-----------------------YNPR------SYRICNGCHGDI 582 Query 180 GHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHFI 239 G G +L C+ + +HPECF C C PI+E+EFS SGN +HK+C+RE HPKC+VC FI Sbjct 583 GSGNYLGCMGTFFHPECFLCRACGYPITEHEFSLSGNNTYHKSCFREMTHPKCEVCFQFI 762 Query 240 PTNHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELNDGRKLCLECLD 299 PTN AGLIEYR HPFW QKYCPSHEHD T RCCSCER+EP N RYV L DGR LCLEC++ Sbjct 763 PTNAAGLIEYRCHPFWSQKYCPSHEHDVTKRCCSCERLEPWNARYVSLGDGRSLCLECME 942 Query 300 SAVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEKNGHYHMPETRG 359 SA+MDT CQPLY I+++YEG+NMK+EQ+VP+LLVERQALNEA EGEK+G +HMPETRG Sbjct 943 SAIMDTGDCQPLYHAIRDYYEGMNMKIEQQVPMLLVERQALNEAIEGEKHGFHHMPETRG 1122 Query 360 LCLSEEQTVSTVRKRSKHGTGKWAGNITEPYKLTRQCEVTAILILFGLPRLLTGSILAHE 419 LCLSEEQTV+++ KR + G + G T P KLTR+CEVTAIL+LFGLPRLLTG+ILAHE Sbjct 1123 LCLSEEQTVTSILKRPRMGGREVVGIRTHPQKLTRKCEVTAILVLFGLPRLLTGAILAHE 1302 Query 420 MMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAELa--agstnsnaassssssQGLKKGP 477 +MHAW+RLKG+R LS +VEEGICQV+++ WL++E+ + S + +SSSS KKG Sbjct 1303 LMHAWLRLKGYRNLSLEVEEGICQVLSYMWLESEVMPGSRDMPSTSTASSSSMSSTKKGV 1482 Query 478 RSQYERKLGEFFKHQIESDASPVYGDGFRAGRLAVHKYGLRKTLEHIQMTGRFPV 532 +S E KLGEFF HQI D SP YG GFR+ AV+KYGLR TL+HI++TG FP+ Sbjct 1483 KSGVENKLGEFFMHQIAHDTSPAYGGGFRSANEAVNKYGLRCTLDHIRLTGSFPL 1647 >Sopim01g105180.0.1 LIM zinc-binding protein (AHRD V1 *--* D6TLS9_9CHLR) Length=1170 Score = 192 bits (487), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 164/303 (54%), Gaps = 31/303 (10%) Frame = +1 Query 232 CDVCSHFIPTNHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELNDGR 291 CDVC I + E+ +W Q H D TP CC+C R + + RY+ L+DGR Sbjct 340 CDVCEEQISS------EWLRCTYWGQTVRKKHISDGTPCCCACSRFKIGDIRYITLSDGR 501 Query 292 KLCLECLDSAVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEKNGH 351 +LC +C +AVMD C+PL ++ F++GLNMK+ +P+LLV+++ + Sbjct 502 QLCPDCHYTAVMDPEDCKPLLDEVHRFFKGLNMKIRYYIPILLVDQEEIIRI-------- 657 Query 352 YHMPETRGLCLSEEQTVSTVRKRSKH-GTGKWAGNITEPYKLTRQCEVTAILILFGLPRL 410 H G + E+ + V SK G+ + E +L +V A+L+L+G P+L Sbjct 658 -HKKSILGSTIYEKFELEAVNYVSKSIQRGENVEVVKEVEQLPPGRKVRAVLLLYGFPKL 834 Query 411 LTGSILAHEMMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAELaagstnsnaassssss 470 GS LAHE+MHAWMR++G+R LS ++ EG+ QVMAHKWL+ + S + Sbjct 835 AIGSTLAHELMHAWMRVQGYRGLSLNIAEGLSQVMAHKWLEWQ-------------SFTG 975 Query 471 QGLKKGP--RSQYERKLGEFFKHQIESDASPVYGDGFRAGRLAVHKYGLRKTLEHIQMTG 528 KG ++Q+ R L EF K IE S YG GFR + AV +YGLR TL+HI G Sbjct 976 HDYMKGTSEKAQFLRNLKEFMKDGIERRYSEAYGHGFREAKWAVERYGLRYTLKHIARKG 1155 Query 529 RFP 531 + P Sbjct 1156 KLP 1164 >Sopim01g105210.0.1 Zinc ion binding protein (AHRD V1 **-- B6SPK3_MAIZE) Length=366 Score = 117 bits (294), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 61/132 (46%), Positives = 84/132 (64%), Gaps = 13/132 (10%) Frame = +1 Query 401 ILILFGLPRLLTGSILAHEMMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAELaagstn 460 +L+L+GLP+L G+ LAHEMMHAWM+++G+ LS ++ EGIC+VMAHKWL+ + Sbjct 1 MLLLYGLPKLDLGATLAHEMMHAWMKIEGYEGLSLNIAEGICEVMAHKWLEWQ------- 159 Query 461 snaassssssQGLK-KGPRSQYERKLGEFFKHQIESDASPVYGDGFRAGRLAVHKYGLRK 519 S + + +K ++Q+ R L EF K IE S YG GFR + AV +YGLR Sbjct 160 -----SFTGDENIKGTSEKAQFLRNLKEFLKDGIEKSHSEAYGHGFREAKWAVERYGLRC 324 Query 520 TLEHIQMTGRFP 531 TLEHI TG+ P Sbjct 325 TLEHISHTGKLP 360 >Sopim01g105200.0.1 Zinc ion binding protein (AHRD V1 ***- B6SPK3_MAIZE) Length=489 Score = 101 bits (251), Expect = 6e-25, Method: Composition-based stats. Identities = 46/122 (38%), Positives = 72/122 (59%), Gaps = 7/122 (6%) Frame = +1 Query 232 CDVCSHFIPTNHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELNDGR 291 CDVC I + ++ +W Q YC H D TP+CCSC R++ + +Y+ LNDGR Sbjct 58 CDVCEEEICS------DWSRCTYWGQTYCEKHTSDGTPQCCSCSRLKIGDLKYIILNDGR 219 Query 292 KLCLECLDSAVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLV-ERQALNEAREGEKNG 350 KLC +C +AV D C+PL ++ F++G+NMK+ +P+LLV E++ + + + G Sbjct 220 KLCPDCHYTAVTDPGDCKPLLDEVHRFFKGMNMKIRYYIPILLVDEKEMIKNVEKVGRTG 399 Query 351 HY 352 Y Sbjct 400 DY 405 >Sopim04g079850.0.1 Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHC1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat Length=2796 Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 62/136 (46%), Positives = 75/136 (55%), Gaps = 34/136 (25%) Frame = +1 Query 390 YKLTRQCEVTAILILFGLP----------RLLTGSILAHEMMHAWMRLKGFRTLSQDVEE 439 YK+ + E +I +LF + R LTGSI AHEMMHAW+RL+G+RTLSQDVEE Sbjct 2458 YKIGKTSEAVSI-VLFMMEHPVTVAVSEWRFLTGSIFAHEMMHAWLRLRGYRTLSQDVEE 2634 Query 440 GICQVMAHKWLDAELaagstnsnaassssssQGLKKGPRSQYERKLGEFFKHQIESDASP 499 IC+ S +K G S +ERKLG+ FKHQ ESD SP Sbjct 2635 DICR-----------------------YSRVIIIKAGIGSPFERKLGDSFKHQNESDTSP 2745 Query 500 VYGDGFRAGRLAVHKY 515 +YG FRAG AV KY Sbjct 2746 IYGYRFRAGNQAVLKY 2793 Lambda K H a alpha 0.318 0.135 0.427 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 3609665202 Database: S. pimpinellifolium CDS LA1589 Posted date: Mar 21, 2024 4:05 PM Number of letters in database: 35,973,059 Number of sequences in database: 34,727 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40