BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: N.tabacum K326 CDS 85,994 sequences; 97,717,452 total letters Query= Untitled_sequence Length=909 Score E Sequences producing significant alignments: (Bits) Value mRNA_77453_cdsmRNA_77453 gene_44877|id=AT5G62940.1:evalue=1e-57:a... 110 6e-23 mRNA_77631_cdsmRNA_77631 gene_44971|id=AT5G62940.1:evalue=6e-55:a... 99.0 1e-19 mRNA_48215_cdsmRNA_48215 gene_27950|id=AT3G55370.1:evalue=2e-58:a... 91.6 2e-17 mRNA_124150_cdsmRNA_124150 gene_73256|id=AT3G55370.1:evalue=4e-49... 86.1 1e-15 mRNA_124149_cdsmRNA_124149 gene_73256|id=AT5G02460.1:evalue=2e-44... 86.1 1e-15 mRNA_52232_cdsmRNA_52232 gene_30287|id=AT3G55370.1:evalue=2e-54:a... 86.1 1e-15 mRNA_83091_cdsmRNA_83091 gene_48513|id=AT2G37590.1:evalue=1e-53:a... 76.8 6e-13 mRNA_76433_cdsmRNA_76433 gene_44296|id=AT2G37590.1:evalue=6e-51:a... 75.0 2e-12 mRNA_118747_cdsmRNA_118747 gene_70131|id=AT2G28510.1:evalue=2e-46... 73.1 8e-12 mRNA_112274_cdsmRNA_112274 gene_66334|id=AT1G51700.1:evalue=3e-43... 73.1 8e-12 mRNA_80222_cdsmRNA_80222 gene_46630|id=AT1G51700.1:evalue=1e-42:a... 73.1 8e-12 >mRNA_77453_cds mRNA_77453 gene_44877|id=AT5G62940.1:evalue=1e-57:annot='Dof-type zinc finger DNA-binding family protein';id=Solyc03g112930.2.1:evalue=3e-108:annot='Dof zinc finger protein-like' Length=978 Score = 110 bits (59), Expect = 6e-23 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 121 AAGTGCCCACGGTGCGACTCGCTCAACACAAAATTCTGCTACTACAACAACTACAACCTC 180 || ||||| || |||||||| | |||| |||||||| ||||||||||| |||| ||| Sbjct 178 AAATGCCCTCGTTGCGACTCTACCCACACCAAATTCTGTTACTACAACAATTACAGCCTT 237 Query 181 TCTCAGCCCCGTCACTTCTGCAAGAACTGCCGGCGGTACTGGACCAAAGGAGGTGTTCTC 240 |||||||| || |||||||||||| ||||| |||||||||| ||||| ||| | | Sbjct 238 TCTCAGCCTCGCTACTTCTGCAAGACTTGCCGTAGGTACTGGACTAAAGGTGGTACTTTA 297 Query 241 CGTAACGTCCCCGTCGGTGGAGGTTGCCGGAAAACCAA 278 || ||| |||| || ||||| ||||| || |||| ||| Sbjct 298 CGAAACATCCCTGTTGGTGGTGGTTGTCGCAAAAACAA 335 >mRNA_77631_cds mRNA_77631 gene_44971|id=AT5G62940.1:evalue=6e-55:annot='Dof-type zinc finger DNA-binding family protein';id=Solyc03g112930.2.1:evalue=1e-110:annot='Dof zinc finger protein-like' Length=987 Score = 99.0 bits (53), Expect = 1e-19 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 121 AAGTGCCCACGGTGCGACTCGCTCAACACAAAATTCTGCTACTACAACAACTACAACCTC 180 || ||||| || |||||||| | |||| |||||||| ||||||||||| |||| ||| Sbjct 181 AAATGCCCTCGCTGCGACTCTACCCACACCAAATTCTGTTACTACAACAATTACAGCCTT 240 Query 181 TCTCAGCCCCGTCACTTCTGCAAGAACTGCCGGCGGTACTGGACCAAAGGAGGTGTTCTC 240 |||||||| || |||| ||||||| ||||| |||||||||| ||||| ||| | | Sbjct 241 TCTCAGCCTCGCTACTTTTGCAAGACTTGCCGTAGGTACTGGACTAAAGGTGGTACTTTA 300 Query 241 CGTAACGTCCCCGTCGGTGGAGGTTGCCGGAAAACCAA 278 | ||| |||| || ||||| ||||| || |||| ||| Sbjct 301 AGAAACATCCCTGTTGGTGGTGGTTGTCGCAAAAACAA 338 >mRNA_48215_cds mRNA_48215 gene_27950|id=AT3G55370.1:evalue=2e-58:annot='OBF-binding protein 3';id=Solyc05g054510.1.1:evalue=5e-89:annot='Dof zinc finger protein' Length=900 Score = 91.6 bits (49), Expect = 2e-17 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 121 AAGTGCCCACGGTGCGACTC-GCTCAACACAAAATTCTGCTACTACAACAACTACAACCT 179 || || ||||| ||||| || || || |||||||| || |||| ||| || |||| ||| Sbjct 235 AAATGTCCACGTTGCGAGTCCACT-AATACAAAATTTTGTTACTTCAATAATTACAGCCT 293 Query 180 CTCTCAGCCCCGTCACTTCTGCAAGAACTGCCGGCGGTACTGGACCAAAGGAGGTGTTCT 239 |||||||| ||||| |||||||||| |||||| | || ||||| | ||| || | || Sbjct 294 TTCTCAGCCACGTCATTTCTGCAAGACTTGCCGGAGATATTGGACTAGAGGTGGCGCGCT 353 Query 240 CCGTAACGTCCCCGTCGGTGGAGGTTGCCGGA 271 | |||||||||||||| || || ||||||| Sbjct 354 GAGGAACGTCCCCGTCGGAGGGGGATGCCGGA 385 >mRNA_124150_cds mRNA_124150 gene_73256|id=AT3G55370.1:evalue=4e-49:annot='OBF-binding protein 3';id=Solyc10g086440.1.1:evalue=7e-136:annot='Dof zinc finger protein' Length=1068 Score = 86.1 bits (46), Expect = 1e-15 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 121 AAGTGCCCACGGTGCGACTCGCTCAACACAAAATTCTGCTACTACAACAACTACAACCTC 180 |||||||| || || || ||| ||||| || || ||||||| |||||||| | || Sbjct 223 AAGTGCCCTCGTTGTGAATCGACAAACACTAAGTTTTGCTACTTTAACAACTATAGTCTT 282 Query 181 TCTCAGCCCCGTCACTTCTGCAAGAACTGCCGGCGGTACTGGACCAAAGGAGGTGTTCTC 240 || ||||| |||||||||||||||| |||| | |||||||||| | ||| || | ||| Sbjct 283 TCACAGCCTCGTCACTTCTGCAAGACCTGCAGAAGGTACTGGACGAGAGGGGGCGCTCTG 342 Query 241 CGTAACGTCCCCGTCGGTGGAGGTTGCCGGA 271 | | |||||| || ||||| ||||| |||| Sbjct 343 AGGAGCGTCCCTGTAGGTGGCGGTTGTCGGA 373 >mRNA_124149_cds mRNA_124149 gene_73256|id=AT5G02460.1:evalue=2e-44:annot='Dof-type zinc finger DNA-binding family protein';id=Solyc10g086440.1.1:evalue=3e-111:annot='Dof zinc finger protein' Length=897 Score = 86.1 bits (46), Expect = 1e-15 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 121 AAGTGCCCACGGTGCGACTCGCTCAACACAAAATTCTGCTACTACAACAACTACAACCTC 180 |||||||| || || || ||| ||||| || || ||||||| |||||||| | || Sbjct 52 AAGTGCCCTCGTTGTGAATCGACAAACACTAAGTTTTGCTACTTTAACAACTATAGTCTT 111 Query 181 TCTCAGCCCCGTCACTTCTGCAAGAACTGCCGGCGGTACTGGACCAAAGGAGGTGTTCTC 240 || ||||| |||||||||||||||| |||| | |||||||||| | ||| || | ||| Sbjct 112 TCACAGCCTCGTCACTTCTGCAAGACCTGCAGAAGGTACTGGACGAGAGGGGGCGCTCTG 171 Query 241 CGTAACGTCCCCGTCGGTGGAGGTTGCCGGA 271 | | |||||| || ||||| ||||| |||| Sbjct 172 AGGAGCGTCCCTGTAGGTGGCGGTTGTCGGA 202 >mRNA_52232_cds mRNA_52232 gene_30287|id=AT3G55370.1:evalue=2e-54:annot='OBF-binding protein 3';id=Solyc05g054510.1.1:evalue=5e-84:annot='Dof zinc finger protein' Length=879 Score = 86.1 bits (46), Expect = 1e-15 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 145 AACACAAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCCCGTCACTTCTGCAAG 204 || |||||||| || |||| ||| || |||| ||| ||||| || ||||| ||||||||| Sbjct 259 AATACAAAATTTTGTTACTTCAATAATTACAGCCTTTCTCAACCACGTCATTTCTGCAAG 318 Query 205 AACTGCCGGCGGTACTGGACCAAAGGAGGTGTTCTCCGTAACGTCCCCGTCGGTGGAGGT 264 | |||||| | || ||||| | ||| |||| || | |||||||||||||| || || Sbjct 319 ACTTGCCGGAGATATTGGACTAGAGGTGGTGCGCTGAGGAACGTCCCCGTCGGAGGTGGA 378 Query 265 TGCCGGA 271 ||||||| Sbjct 379 TGCCGGA 385 >mRNA_83091_cds mRNA_83091 gene_48513|id=AT2G37590.1:evalue=1e-53:annot='DNA binding with one finger 2.4';id=Solyc09g010680.2.1:evalue=3e-154:annot='Dof zinc finger protein' Length=1167 Score = 76.8 bits (41), Expect = 6e-13 Identities = 119/157 (76%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 121 AAGTGCCCACGGTGCGACTCGCTC-AACACAAAATTCTGCTACTACAACAACTACAACCT 179 || ||||| || ||||| || || ||||| || || ||||||| ||||||||||| || Sbjct 241 AAATGCCCTCGATGCGAATC-ATCAAACACCAAGTTTTGCTACTTCAACAACTACAGTCT 299 Query 180 CTCTCAGCCCCGTCACTTCTGCAAGAACTGCCGGCGGTACTGGACCAAAGGAGGTGTTCT 239 || ||||| | ||||| ||||||| || | |||||||||| | ||| || | ||| Sbjct 300 TTCGCAGCCTAGACACTTTTGCAAGACTTGTAGAAGGTACTGGACTAGAGGCGGCGCTCT 359 Query 240 CCGTAACGTCCCCGTCGGTGGAGGTTGCCGGA-AAAC 275 | || |||||||| ||||| ||||| |||| |||| Sbjct 360 GAGGAATGTCCCCGTGGGTGGTGGTTGTCGGAGAAAC 396 >mRNA_76433_cds mRNA_76433 gene_44296|id=AT2G37590.1:evalue=6e-51:annot='DNA binding with one finger 2.4';id=Solyc10g086440.1.1:evalue=4e-134:annot='Dof zinc finger protein' Length=1074 Score = 75.0 bits (40), Expect = 2e-12 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 145 AACACAAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCCCGTCACTTCTGCAAG 204 ||||| || || ||||||| ||||||||||| || || ||||| ||||| ||||||||| Sbjct 247 AACACCAAGTTTTGCTACTTCAACAACTACAGTCTTTCGCAGCCTCGTCATTTCTGCAAG 306 Query 205 AACTGCCGGCGGTACTGGACCAAAGGAGGTGTTCTCCGTAACGTCCCCGTCGGTGGAGGT 264 | ||| | |||||||||| | ||| || | | | | | |||||| || ||||| ||| Sbjct 307 ACTTGCAGAAGGTACTGGACGAGAGGGGGCGCTTTGAGGAGCGTCCCTGTGGGTGGCGGT 366 Query 265 TGCCGGA 271 || |||| Sbjct 367 TGTCGGA 373 >mRNA_118747_cds mRNA_118747 gene_70131|id=AT2G28510.1:evalue=2e-46:annot='Dof-type zinc finger DNA-binding family protein';id=Solyc06g075370.2.1:evalue=8e-133:annot='Dof zinc finger protein 9' Length=903 Score = 73.1 bits (39), Expect = 8e-12 Identities = 74/91 (81%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 144 CAACACAAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCCCGTCACTTCTGCAA 203 |||||| ||||||||||||||||||||||||| |||||||| || | |||| ||||| Sbjct 144 CAACACCAAATTCTGCTACTACAACAACTACAGTCTCTCTCAACCTAGATACTTTTGCAA 203 Query 204 GAAC-TGCCGGCGGTACTGGACCAAAGGAGG 233 | | ||| | | || |||||||||||||| Sbjct 204 -ATCATGCAGAAGATATTGGACCAAAGGAGG 233 >mRNA_112274_cds mRNA_112274 gene_66334|id=AT1G51700.1:evalue=3e-43:annot='DOF zinc finger protein 1';id=Solyc03g121400.1.1:evalue=4e-83:annot='Dof zinc finger protein 4' Length=663 Score = 73.1 bits (39), Expect = 8e-12 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118 TTGAAGTGCCCACGGTGCGACTCGCTCAACACAAAATTCTGCTACTACAACAACTACAAC 177 ||||| ||||| | || || || | |||||||||||||| || |||||||| || || Sbjct 58 TTGAAATGCCCCAGATGTGATTCACCAAACACAAAATTCTGTTATTACAACAATTATAAT 117 Query 178 CTCTCTCAGCCCCGTCACTTCTGCAAGAACTGCCGGCGGTACTGGACCAAAGGAGGT 234 || |||||||| |||||||| || |||| || || |||| ||||| ||||| ||| Sbjct 118 CTTTCTCAGCCACGTCACTTTTGTAAGAGTTGTCGTAGGTATTGGACAAAAGGCGGT 174 >mRNA_80222_cds mRNA_80222 gene_46630|id=AT1G51700.1:evalue=1e-42:annot='DOF zinc finger protein 1';id=Solyc03g121400.1.1:evalue=1e-84:annot='Dof zinc finger protein 4' Length=675 Score = 73.1 bits (39), Expect = 8e-12 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118 TTGAAGTGCCCACGGTGCGACTCGCTCAACACAAAATTCTGCTACTACAACAACTACAAC 177 ||||| || ||| | || || || | ||||||||||| || || |||||||| || || Sbjct 58 TTGAAATGTCCAAGATGTGATTCACCAAACACAAAATTATGTTATTACAACAATTATAAT 117 Query 178 CTCTCTCAGCCCCGTCACTTCTGCAAGAACTGCCGGCGGTACTGGACCAAAGGAGGT 234 || |||||||| |||||||| || |||| || || |||| ||||||||||| ||| Sbjct 118 CTTTCTCAGCCACGTCACTTTTGTAAGAGTTGTCGTAGGTATTGGACCAAAGGTGGT 174 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84310259864 Database: N.tabacum K326 CDS Posted date: Mar 21, 2024 3:23 PM Number of letters in database: 97,717,452 Number of sequences in database: 85,994 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5