BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: N.benthamiana Genome v1.0.1 predicted cDNA
           57,140 sequences; 82,582,885 total letters



Query= Untitled_sequence

Length=2208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Niben101Scf06909g04005.1sp|Q9LIG2|RLK6_ARATH *-** Receptor-like p...  97.1    1e-18


>Niben101Scf06909g04005.1 sp|Q9LIG2|RLK6_ARATH *-** Receptor-like protein kinase IPR000742 
(Epidermal growth factor-like domain), IPR011009 (Protein 
kinase-like domain) GO:0004672 (protein kinase activity), 
GO:0005509 (calcium ion binding), GO:0005515 (protein binding), 
GO:0005524 (ATP binding), GO:0006468 (protein phosphorylation), 
GO:0016772 (transferase activity, transferring phosphorus-containing 
groups)
Length=1899

 Score = 97.1 bits (52),  Expect = 1e-18
 Identities = 104/130 (80%), Gaps = 0/130 (0%)
 Strand=Plus/Plus

Query  1342  GAGCAGTTCATCAATGAAGTGCTCGTGCTTTCACAAATCAACCATAGGAACGTAGTCAAG  1401
             ||||| ||||| || |||||  | || || ||||||||||| ||||| || || || |||
Sbjct  1078  GAGCAATTCATAAACGAAGTCATTGTCCTCTCACAAATCAATCATAGAAATGTGGTTAAG  1137

Query  1402  CTCTTGGGCTGCTGTCTAGAGACTGAAGTTCCCTTGTTGGTCTATGAGTTCATCACCAAT  1461
             ||||| || || || |||||||| |||||||| || ||||| ||||| ||||||  ||||
Sbjct  1138  CTCTTAGGTTGTTGCCTAGAGACAGAAGTTCCATTATTGGTGTATGAATTCATCGACAAT  1197

Query  1462  GGCACCCTTT  1471
             || || ||||
Sbjct  1198  GGAACACTTT  1207



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 176748469005


  Database: N.benthamiana Genome v1.0.1 predicted cDNA
    Posted date:  Mar 21, 2024  4:04 PM
  Number of letters in database: 82,582,885
  Number of sequences in database:  57,140



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5