BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome cDNA (ITAG release 2.40) 34,725 sequences; 41,981,568 total letters Query= AF011557.1 Length=1358 Score E Sequences producing significant alignments: (Bits) Value Solyc08g076930.1jasmonic acid 3 la3 1857 0.0 Solyc08g005050.2Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE);... 255 5e-67 Solyc01g096050.2bHLH transcription factor_SGN-U238928 126 4e-28 Solyc06g083980.1BHLH transcription factor (AHRD V1 *-** Q401N4_9L... 110 4e-23 Solyc10g009290.1BHLH transcription factor (AHRD V1 *-** Q401N4_9L... 71.3 2e-11 >Solyc08g076930.1 jasmonic acid 3 la3 Length=2070 Score = 1857 bits (1005), Expect = 0.0 Identities = 1036/1049 (99%), Gaps = 10/1049 (1%) Strand=Plus/Plus Query 36 TGGAAATGGTCAGAGTTGTTACAATCAGCAACAACAGAAGAATCCTCCTCAGCAACAAAC 95 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1026 TGGAAATGGTCAGAGTTGTTACAATCAGCAACAACAGAAGAATCCTCCTCAGCAACAAAC 1085 Query 96 ACAAGGATTCTTCACGAGGGAGTTGAATTTTTCGGAATTCGGTTTCGATGGAAGTAGTAA 155 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1086 ACAAGGATTCTTCACGAGGGAGTTGAATTTTTCGGAATTCGGTTTCGATGGAAGTAGTAA 1145 Query 156 TAGGAATGGAAATTCATCGGTTTCTTGCAAGCCTGAATCAGGAGAAATCTTGAATTTTGG 215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1146 TAGGAATGGAAATTCATCGGTTTCTTGCAAGCCTGAATCAGGAGAAATCTTGAATTTTGG 1205 Query 216 TGATAGTACTAAAAAAAGTGCTTCCAGTGCCAATGTGAACTTGTTTACAGGTCAGTCCCA 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1206 TGATAGTACTAAAAAAAGTGCTTCCAGTGCCAATGTGAACTTGTTTACAGGTCAGTCCCA 1265 Query 276 ATTTTGGGGCCTGGGGGAGGAGAATAATAACAAGAACCAAGAAAAGATCAGCTACTT-CA 334 |||| |||| || ||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1266 ATTT-GGGG-CT-GGGGAGGAGAATAATAACAAGAA-CAAGAAAAGATCAGCTACTTCCA 1321 Query 335 GGGGAAGCAATGAAGAAGGAATGCTTTCATTTGTTTCAGGTACAGTTT-G-CTTCTTCGG 392 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1322 GGGGAAGCAATGAAGAAGGAATGCTTTCATTTGTTTCAGGTACAGTTTTGCCTTCTTCGG 1381 Query 393 GCATGAAGTCAGGTGGAGGCGGAGGC-AAGACTCTGAACATTCAGATCTCGAGGCTTCAG 451 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1382 GCATGAAGTCAGGTGGAGGCGGAGGCGAAGACTCTGAACATTCAGATCTCGAGGCTTCAG 1441 Query 452 TGGTGAAAGAAGCTGATAGTAGTAGAGTGGTAGAGCCTGAAAAGAGGCCAAGGAAGCGAG 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1442 TGGTGAAAGAAGCTGATAGTAGTAGAGTGGTAGAGCCTGAAAAGAGGCCAAGGAAGCGAG 1501 Query 512 GTAGAAAGCCAGCGAATGGACGGGAGGAGCCATTGAATCACGTCGAGGCAGAGAGGCAAA 571 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1502 GTAGAAAGCCAGCGAATGGACGGGAGGAGCCATTGAATCACGTCGAGGCAGAGAGGCAAA 1561 Query 572 GGAGGGAGAAATTGAACCAAAGATTCTTCTCTCTTAGAGCTGTTGTACCAAATGTGTCTA 631 ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| Sbjct 1562 GGAGGGAGAAATTGAACCAAAGATTCTACGCGCTTAGAGCTGTTGTACCAAATGTGTCTA 1621 Query 632 AGATGGACAAGGCATCACTCCTTGGAGATGCTATTTCCTATATAAACGAGTTGAAATCGA 691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1622 AGATGGACAAGGCATCACTCCTTGGAGATGCTATTTCCTATATAAACGAGTTGAAATCGA 1681 Query 692 AGCTTCAAAATACAGAGTCAGATAAAGAAGACTTGAAGAGCCAAATAGAAGATTTAAAGA 751 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1682 AGCTTCAAAATACAGAGTCAGATAAAGAAGACTTGAAGAGCCAAATAGAAGATTTAAAGA 1741 Query 752 AAGAATCAAGGCGCCCCGGTCCTCCTCCACCACCAAATCAAGATCTCAAGATGTCTAGCC 811 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1742 AAGAATCAAGGCGCCCCGGTCCTCCTCCACCACCAAATCAAGATCTCAAGATGTCTAGCC 1801 Query 812 ACACTGGAGGCAAGATTGTAGACGTGGATATAGACGTTAAGATCATCGGATGGGATGCAA 871 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1802 ACACTGGAGGCAAGATTGTAGACGTGGATATAGACGTTAAGATCATCGGATGGGATGCAA 1861 Query 872 TGATTCGTATACAATGTAATAAAAAGAATCATCCAGC-G-AAGGCTAATGGCAGCGCTCA 929 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 1862 TGATTCGTATACAATGTAATAAAAAGAATCATCCAGCCGCAAGGCTAATGGCAGCGCTCA 1921 Query 930 TGGAATTAGACCTAGACGTGCATCATGCCAGTGTTTCAGTTGTCAACGATTTGATGATCC 989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1922 TGGAATTAGACCTAGACGTGCATCATGCCAGTGTTTCAGTTGTCAACGATTTGATGATCC 1981 Query 990 AACAAGCCACAGTGAAAATGGGTAGCAGACATTACACTGAAGAGCAGCTTAGGGTAGCGT 1049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1982 AACAAGCCACAGTGAAAATGGGTAGCAGACATTACACTGAAGAGCAGCTTAGGGTAGCGT 2041 Query 1050 TGACATCGAAAATTGCTGAAACACACTAA 1078 ||||||||||||||||||||||||||||| Sbjct 2042 TGACATCGAAAATTGCTGAAACACACTAA 2070 >Solyc08g005050.2 Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH Length=1700 Score = 255 bits (138), Expect = 5e-67 Identities = 213/250 (85%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 822 CAAGATTGTAGACGTGGATATAGACGTTAAGATCATCGGATGGGATGCAATGATTCGTAT 881 ||||||||| || |||| || ||||||||| | || ||||||||||| ||||||||||| Sbjct 1210 CAAGATTGTCGATATGGACATTGACGTTAAGGTGATTGGATGGGATGCTATGATTCGTAT 1269 Query 882 ACAATGTAATAAAAAGAATCATCCAGC-GA-AGGCTAATGGCAGCGCTCATGGAATTAGA 939 |||||||| ||||||||| |||||||| | |||||||||||||| |||| ||| || || Sbjct 1270 ACAATGTAGTAAAAAGAACCATCCAGCTGCCAGGCTAATGGCAGCCCTCAAGGACTTGGA 1329 Query 940 CCTAGACGTGCATCATGCCAGTGTTTCAGTTGTCAACGATTTGATGATCCAACAAGCCAC 999 |||||||||||| || || |||||||| || || || ||||||||||||||||||||||| Sbjct 1330 CCTAGACGTGCACCACGCTAGTGTTTCCGTGGTGAATGATTTGATGATCCAACAAGCCAC 1389 Query 1000 AGTGAAAATGGGTAGCAGACATTACACTGAAGAGCAGCTTAGGGTAGCGTTGACATCGAA 1059 ||| |||||||| ||| | | ||| || |||| ||||||||| |||| |||||||| || Sbjct 1390 AGTCAAAATGGGGAGCCGGCTTTATGCTCAAGAACAGCTTAGGATAGCATTGACATCAAA 1449 Query 1060 AATTGCTGAA 1069 |||||||||| Sbjct 1450 AATTGCTGAA 1459 Score = 147 bits (79), Expect = 3e-34 Identities = 235/306 (77%), Gaps = 27/306 (9%) Strand=Plus/Plus Query 296 AGAATAATAACAAGAACCAAGAAAAGATCAGCTACTTC-AGGGGAAGCAATGAAGAAGGA 354 |||| || |||||||| ||||||||| ||| | || ||||||| ||||||||||||| Sbjct 834 AGAACAAGAACAAGAA-CAAGAAAAGGTCACTTGGATCAAGGGGAAACAATGAAGAAGGA 892 Query 355 ATGCTTTCATTTGTTTCAGGTACAGTTTGCTTCTT-CGGGCATGAAGTCAGGTGG-AGGC 412 |||||||| |||||||| || || || |||| | | | || | | || || | Sbjct 893 ATGCTTTCGTTTGTTTC-GG----GTGTG-ATCTTGCCAACTTCAA-CAATGGGGAAGTC 945 Query 413 GGAGGCAAGACTCTGAACATTCAGATCTCGAGGCTTCAGTGGTGAAAGAAGCTGATAGTA 472 | || || ||||| || ||||||||||| || ||||||||||| || || | | | Sbjct 946 CG-GG---GATTCTGATCACTCAGATCTCGAAGCCTCAGTGGTGAAGGAGGCCG-T--T- 997 Query 473 GTAGAGTGGTAGAGCCTGAAAAGAGGCCAAGGAAGCGAGGTAGAAAGCCAGCGAATGGAC 532 || | | | | |||||||||| ||| ||||||||||| || || ||||| |||||| Sbjct 998 GT--A---G-A-A-CCTGAAAAGAAGCCGAGGAAGCGAGGGAGGAAACCAGCCAATGGAA 1049 Query 533 GGGAGGAGCCATTGAATCACGTCGAGGCAGAGAGGCAAAGGAGGGAGAAATTGAACCAAA 592 |||||||||||||||||||||| || || ||||| || ||||||||||||||||| |||| Sbjct 1050 GGGAGGAGCCATTGAATCACGTGGAAGCGGAGAGACAGAGGAGGGAGAAATTGAATCAAA 1109 Query 593 GATTCT 598 |||||| Sbjct 1110 GATTCT 1115 >Solyc01g096050.2 bHLH transcription factor_SGN-U238928 Length=2277 Score = 126 bits (68), Expect = 4e-28 Identities = 149/189 (79%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 489 TGAAAAGAGGCCAAGGAAGCGAGGTAGAAAGCCAGCGAATGGACGGGAGGAGCCATTGAA 548 |||||||||||| | || || || ||||||||||| |||||| |||| ||||| | || Sbjct 1413 TGAAAAGAGGCCTCGAAAACGTGGAAGAAAGCCAGCCAATGGAAGGGAAGAGCCTCTCAA 1472 Query 549 TCACGTCGAGGCAGAGAGGCAAAGGAGGGAGAAATTGAACCAAAGATTCTTCTCTCTTA- 607 ||| || ||||||||||| || ||||||| || |||||||| | |||| | |||| Sbjct 1473 TCATGTAGAGGCAGAGAGACAGCGGAGGGAAAAGTTGAACCAGCGGTTCTATGC-CTTAC 1531 Query 608 GAGCTGTTGTACCAAATGTGTCTAAGATGGACAAGGCATCACTCCTTGGAGATGCTATTT 667 |||||||||| |||||| | || ||||||||||| || || ||| | |||||||| ||| Sbjct 1532 GAGCTGTTGTTCCAAATATCTCCAAGATGGACAAAGCTTCCCTCTTAGGAGATGCCATTG 1591 Query 668 CCTATATAA 676 | || |||| Sbjct 1592 CTTACATAA 1600 >Solyc06g083980.1 BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding Length=1434 Score = 110 bits (59), Expect = 4e-23 Identities = 138/177 (78%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 499 CCAAGGAAGCGAGGTAGAAAGCCAGCGAATGGACGGGAGGAGCCATTGAATCACGTCGAG 558 ||||| ||| | || |||||||| || ||||| |||| || |||||||||| || || Sbjct 943 CCAAGAAAGAGGGGCAGAAAGCCTGCCAATGGGAGGGAAGAAGCATTGAATCATGTTGAA 1002 Query 559 GCAGAGAGGCAAAGGAGGGAGAAATTGAACCAAAGATTCTTCT-CTCTTAGAGCTGTTGT 617 ||||||||||||||| | ||||| | ||||| || || || | || | ||||| ||||| Sbjct 1003 GCAGAGAGGCAAAGGCGTGAGAAGCTAAACCAGAGGTT-TTATGCTTTAAGAGCAGTTGT 1061 Query 618 ACCAAATGTGTCTAAGATGGACAAGGCATCACTCCTTGGAGATGCTATTTCCTATAT 674 || ||| | || |||||||| || ||||| || ||||||||||| ||| | ||||| Sbjct 1062 TCCGAATATCTCAAAGATGGATAAAGCATCGCTGCTTGGAGATGCAATTGCTTATAT 1118 >Solyc10g009290.1 BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding Length=1356 Score = 71.3 bits (38), Expect = 2e-11 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 541 CCATTGAATCACGTCGAGGCAGAGAGGCAAAGGAGGGAGAAATTGAACCAAAGATTCTTC 600 || ||||| ||||| || |||||||| || ||||||||||| || ||||| ||||||| | Sbjct 802 CCGTTGAACCACGTTGAAGCAGAGAGACAGAGGAGGGAGAAGTTAAACCATAGATTCTAC 861 Query 601 TCTCTTAGAGCTGTTGTACCAAATGTGTCTAAGATGGACAAGGCATCACTCCTTGGAGAT 660 |||| | ||||||| || |||| | || ||||| || || || | | |||| Sbjct 862 GCTCTGCGTTCTGTTGTGCCTCATGTTACCAAAATGGATAAAGCTTCGTTGTTATCAGAT 921 Query 661 GCTATTTCCTATATAAACGAGTTGAAATCGAA 692 ||| | || || || ||||| ||||||||||| Sbjct 922 GCTGTATCGTACATCAACGAATTGAAATCGAA 953 Lambda K H 1.34 0.624 1.13 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54716852376 Database: Tomato Genome cDNA (ITAG release 2.40) Posted date: Mar 21, 2024 3:33 PM Number of letters in database: 41,981,568 Number of sequences in database: 34,725 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5