BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (build SL2.50)
           13 sequences; 823,944,041 total letters



Query= Untitled_sequence

Length=209
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL2.50ch05No definition line found                                    350     6e-95


>SL2.50ch05 No definition line found
Length=65875088

 Score = 350 bits (189),  Expect = 6e-95
 Identities = 209/217 (96%), Gaps = 8/217 (4%)
 Strand=Plus/Plus

Query  1         GTTCGATTTCTCGAATACTACAACTCGGTGGCCTTCTCTTTGTAGCTCACGCGTCGTCAC  60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61133441  GTTCGATTTCTCGAATACTACAACTCGGTGGCCTTCTCTTTGTAGCTCACGCGTCGTCAC  61133500

Query  61        AAGACCCGATGGGCCGGCTCCGATCACTGCTACTTTTCTCGACT--------AGAGGAGA  112
                 ||||||||||||||||||||||||||||||||||||||||||||        ||||||||
Sbjct  61133501  AAGACCCGATGGGCCGGCTCCGATCACTGCTACTTTTCTCGACTCCGCCATGAGAGGAGA  61133560

Query  113       CTATTGAGCTCAAAAAACAGAGTTCTGCACTGAGTTTTTTATATTATAAAGACAAACTGA  172
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61133561  CTATTGAGCTCAAAAAACAGAGTTCTGCACTGAGTTTTTTATATTATAAAGACAAACTGA  61133620

Query  173       ATTGTTCGATTTTCAAAAAACTAATAAATCTTTGTGT  209
                 |||||||||||||||||||||||||||||||||||||
Sbjct  61133621  ATTGTTCGATTTTCAAAAAACTAATAAATCTTTGTGT  61133657


 Score = 148 bits (80),  Expect = 2e-34
 Identities = 96/104 (92%), Gaps = 0/104 (0%)
 Strand=Plus/Plus

Query  1         GTTCGATTTCTCGAATACTACAACTCGGTGGCCTTCTCTTTGTAGCTCACGCGTCGTCAC  60
                 ||||||||||||||| |||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct  61139328  GTTCGATTTCTCGAACACTACAACTCGGTGACCTTCTCTTTGCAGCTCACGCGCCGTCAC  61139387

Query  61        AAGACCCGATGGGCCGGCTCCGATCACTGCTACTTTTCTCGACT  104
                 || |||||||| |||||||||||| |||||||||||||| ||||
Sbjct  61139388  AATACCCGATGCGCCGGCTCCGATTACTGCTACTTTTCTGGACT  61139431



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 149957751580


  Database: Tomato genome chromosomes (build SL2.50)
    Posted date:  Mar 21, 2024  3:33 PM
  Number of letters in database: 823,944,041
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5