BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato genome chromosomes (Build SL4.0)
           13 sequences; 782,520,033 total letters



Query= Untitled_sequence

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

SL4.0ch09                                                             405     1e-111


>SL4.0ch09 
Length=68513564

 Score = 405 bits (219),  Expect = 1e-111
 Identities = 219/219 (100%), Gaps = 0/219 (0%)
 Strand=Plus/Plus

Query  1        GTTTTATAGAGAGGCAGTCTAGAAAAAGGGGAGCTCCAAAGCCAATACAAGAAGTTCAGG  60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1531022  GTTTTATAGAGAGGCAGTCTAGAAAAAGGGGAGCTCCAAAGCCAATACAAGAAGTTCAGG  1531081

Query  61       AGACAAATAATCGTTCAGGCAGGCCAGATGTGCGGAGAAAAGTGAACGAATCTATTGATC  120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1531082  AGACAAATAATCGTTCAGGCAGGCCAGATGTGCGGAGAAAAGTGAACGAATCTATTGATC  1531141

Query  121      TAAATGATCCTCTTCGAATGTTCCTATGGGGTCCCGAAACTAAACAACTCTTAACCGCCA  180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1531142  TAAATGATCCTCTTCGAATGTTCCTATGGGGTCCCGAAACTAAACAACTCTTAACCGCCA  1531201

Query  181      AAGAGGAGTCTGAATTGATTGTCAAGATACAGGTATTTT  219
                |||||||||||||||||||||||||||||||||||||||
Sbjct  1531202  AAGAGGAGTCTGAATTGATTGTCAAGATACAGGTATTTT  1531240



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 150243778944


  Database: Tomato genome chromosomes (Build SL4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 782,520,033
  Number of sequences in database:  13



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5