BLASTN 2.11.0+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Tomato Genome cDNA (ITAG release 2.40) 34,725 sequences; 41,981,568 total letters Query= Untitled_sequence Length=3800 Score E Sequences producing significant alignments: (Bits) Value Solyc05g039920.2Unknown Protein (AHRD V1) 444 3e-123 Solyc00g131710.1Pol polyprotein (AHRD V1 *-*- POL_MLVFP); contain... 405 1e-111 Solyc10g083140.1Unknown Protein (AHRD V1) 383 6e-105 Solyc05g025610.1Unknown Protein (AHRD V1) 340 4e-92 Solyc01g049700.2Retrotransposon gag protein (AHRD V1 *--- Q0KIS1_... 311 3e-83 Solyc11g045620.1Unknown Protein (AHRD V1) 298 2e-79 Solyc00g007310.1Unknown Protein (AHRD V1) 241 4e-62 Solyc12g027470.1Unknown Protein (AHRD V1) 231 2e-59 Solyc01g015160.1Unknown Protein (AHRD V1) 230 8e-59 Solyc09g056020.1Unknown Protein (AHRD V1) 185 2e-45 Solyc00g065510.1Palmitoyltransferase swf1 (AHRD V1 *-*- B2W9G8_PY... 154 5e-36 Solyc05g056620.1macrocalyx mc 147 9e-34 Solyc01g057970.1Unknown Protein (AHRD V1) 132 2e-29 Solyc04g078070.2Expressed protein having alternate splicing produ... 126 1e-27 Solyc10g074660.1Unknown Protein (AHRD V1) 108 4e-22 Solyc00g022110.2Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC);... 102 2e-20 Solyc09g059760.1Unknown Protein (AHRD V1) 99.0 2e-19 Solyc11g030740.1&aposchromo&apos domain containing protein (AHRD ... 89.8 1e-16 Solyc10g052630.1Pol polyprotein (AHRD V1 *-*- POL_BAEVM); contain... 82.4 2e-14 Solyc01g111180.2Unknown Protein (AHRD V1) 80.5 9e-14 Solyc01g110700.2Unknown Protein (AHRD V1) 80.5 9e-14 >Solyc05g039920.2 Unknown Protein (AHRD V1) Length=732 Score = 444 bits (240), Expect = 3e-123 Identities = 280/299 (94%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 4 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCA 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 667 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCA 608 Query 64 GGTCGTCGCAAGGTTCAGAGACCCAATATTTCCACC-AAGGGTCTGTGACGGTCCGTCAC 122 ||||||||||| ||||||||| || |||| || ||| || ||||||||||||||| Sbjct 607 GGTCGTCGCAAAGTTCAGAGAATGGAT-TTTC-ACTGAAGTCTCCGTGACGGTCCGTCAC 550 Query 123 ACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTCAGTACC 182 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 549 GCCTGTGACGGTCCGTCCTGCCATTCCGTCACGAAGTTCAGAGAGTCGATTTTCAGTACC 490 Query 183 CAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATG 242 ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || Sbjct 489 CAATTTCAGATTTTCTAAGTGTTTTGAAATGAGACCCTGCGACGGTCTGTCGTGCCCTTG 430 Query 243 ACGTTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCT 301 ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 ACGGTTCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCT 371 >Solyc00g131710.1 Pol polyprotein (AHRD V1 *-*- POL_MLVFP); contains Interpro domain(s) IPR001584 Integrase, catalytic core Length=1530 Score = 405 bits (219), Expect = 1e-111 Identities = 253/269 (94%), Gaps = 3/269 (1%) Strand=Plus/Minus Query 4 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCA 63 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1477 TCTGCCTGGGATTTGCGCAACCTGTGACAGGCCGTCGTGCCTGCGACGGTCCGTCCTGCA 1418 Query 64 GGTCGTCGCAAGGTTCAGAGACCCAATATTTCCAC-CAAGGGTCTGTGACGGTCCGTCAC 122 ||||||||||| ||||||||| || ||| ||| ||| || ||||||||||||||| Sbjct 1417 GGTCGTCGCAAAGTTCAGAGAATGGAT-TTT-CACTAAAGTCTCCGTGACGGTCCGTCAC 1360 Query 123 ACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTCAGTACC 182 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1359 GCCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTCAGTACC 1300 Query 183 CAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATG 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1299 CAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCTTG 1240 Query 243 ACGTTCCGTCGTGGGGTCCGTCGCTTCTG 271 ||| ||||||||||||||||||||||||| Sbjct 1239 ACGGTCCGTCGTGGGGTCCGTCGCTTCTG 1211 >Solyc10g083140.1 Unknown Protein (AHRD V1) Length=207 Score = 383 bits (207), Expect = 6e-105 Identities = 207/207 (100%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 3316 ATGTCCCCGACGAATTCATGTGTATCATCTGATAATTCGTCGGGGGGACAACGTGGTTCC 3375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCCCCGACGAATTCATGTGTATCATCTGATAATTCGTCGGGGGGACAACGTGGTTCC 60 Query 3376 AACAGCCCCGAAGCGGTGACTTCGATGCTGTTGGTTGGTTGTCAAAGGTGTCTAATGTAT 3435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AACAGCCCCGAAGCGGTGACTTCGATGCTGTTGGTTGGTTGTCAAAGGTGTCTAATGTAT 120 Query 3436 GTTATGGTATCGGAAGTTAATGATCCACCAAGGTGCCCAAAATGCAAGAGTACTTGTTTG 3495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTTATGGTATCGGAAGTTAATGATCCACCAAGGTGCCCAAAATGCAAGAGTACTTGTTTG 180 Query 3496 CTTGAAGTTATCTATGAGAAAAAATAA 3522 ||||||||||||||||||||||||||| Sbjct 181 CTTGAAGTTATCTATGAGAAAAAATAA 207 >Solyc05g025610.1 Unknown Protein (AHRD V1) Length=291 Score = 340 bits (184), Expect = 4e-92 Identities = 223/242 (92%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1 GATTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCT 60 ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 241 GATTCTGCCTGGGATTTGCGCAACCTGTGACAGGCCGTCGTGCCTGCGACGGTTCGTCCT 182 Query 61 GCAGGTCGTCGCAAGGTTCAGAGACCCAATATTTCCACCAAGGGTCTGTGACGGTCCGTC 120 ||| |||||| | |||||||||||||| ||||||||||||||||| ||| ||||||| Sbjct 181 GCATGTCGTCACTGAGTTCAGAGACCCAA-ATTTCCACCAAGGGTCTTTGATAGTCCGTC 123 Query 121 ACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTCAGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 122 ACACCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTTGATTTTCAGTA 63 Query 181 CCCAATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTG-CGACGGTCCGTCGTGCCC 239 |||||||||||||||||||||| ||||| | ||||||| |||||||||||||||||| Sbjct 62 CCCAATTTCAGATTTTCTAAGTATTTTGGGATGAGACCCGCTCGACGGTCCGTCGTGCCC 3 Query 240 AT 241 || Sbjct 2 AT 1 >Solyc01g049700.2 Retrotransposon gag protein (AHRD V1 *--- Q0KIS1_SOLDE); contains Interpro domain(s) IPR000953 Chromo domain Length=776 Score = 311 bits (168), Expect = 3e-83 Identities = 238/268 (89%), Gaps = 20/268 (7%) Strand=Plus/Minus Query 4 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCA 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCA 652 Query 64 GGTCGTCGCAAGGTTCAGAGACCCAATATTTCCACCAAGGGTCTGTGACGGTCCGTCACA 123 ||||||||||||||||||||| || ||| | | | |||| || | | Sbjct 651 GGTCGTCGCAAGGTTCAGAGAATGGAT-TTT----C-A----C--TGAC-GT-C-T---- 611 Query 124 CCTGTGACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTCAGTACCC 183 || |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 610 CC-GTGACGGTCCGTTCTGCCATTCCGTCACGAAGTTCAGAGAGTCGATTTTCAGTACCC 552 Query 184 AATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGA 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 551 AATTTCAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCTTGA 492 Query 244 CGTTCCGTCGTGGGGTCCGTCGCTTCTG 271 || |||||||||||| ||||||||| || Sbjct 491 CGATCCGTCGTGGGGACCGTCGCTTTTG 464 >Solyc11g045620.1 Unknown Protein (AHRD V1) Length=285 Score = 298 bits (161), Expect = 2e-79 Identities = 217/244 (89%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 9 CTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCG 68 ||||||||| |||| ||||||||| |||||| ||||||||||||||||||||| | | Sbjct 243 CTGGGATTT-CGCAGTCTGTGACGGCCCGTCGCGCCTGCGACGGTCCGTCCTGCTGCCTG 185 Query 69 TCGCAAGGTTCAGAGACCCAATATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGT 128 || || |||||||||| |||| ||| ||| ||||||||||||||||||||||||| Sbjct 184 TCACAGAGTTCAGAGACTCAAT--TTCTCTGAAGAGTCTGTGACGGTCCGTCACACCTGT 127 Query 129 GACGGTCCGTCCTGCCATTCCGTCACAAAGTTCAGAGAGTCGATTTTCAGTACCCAATTT 188 ||||||| ||||||| ||||||| || ||||||||||||||||||||||||||||||||| Sbjct 126 GACGGTCAGTCCTGCTATTCCGTTACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTT 67 Query 189 CAGATTTTCTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGACGTTC 248 || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 66 CAAATTTTCTAAGTGTTTTGAAATGAGACCCTGCGACGGTCCGTCGTGCCCATGACGGTC 7 Query 249 CGTC 252 |||| Sbjct 6 CGTC 3 >Solyc00g007310.1 Unknown Protein (AHRD V1) Length=195 Score = 241 bits (130), Expect = 4e-62 Identities = 139/143 (97%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 4 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCA 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 142 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCA 83 Query 64 GGTCGTCGCAAGGTTCAGAGACCCAATATTTCCACCAAGGGTCTGTGACGGTCCGTCACA 123 |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 82 GGTCGTCGCAGAGTTCAGAGACCCAA-ATTTCCACCAAGGGTCTGTGACGGTCCGTCACA 24 Query 124 CCTGTGACGGTCCGTCCTGCCAT 146 |||||||||| |||||||||||| Sbjct 23 CCTGTGACGGACCGTCCTGCCAT 1 >Solyc12g027470.1 Unknown Protein (AHRD V1) Length=165 Score = 231 bits (125), Expect = 2e-59 Identities = 134/138 (97%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 9 CTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCG 68 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136 CTGGGA-TTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCG 78 Query 69 TCGCAAGGTTCAGAGACCCAATATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGT 128 |||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 77 TCGCAAAGATCAGAGACCCAA-ATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGT 19 Query 129 GACGGTCCGTCCTGCCAT 146 |||||||||||||||||| Sbjct 18 GACGGTCCGTCCTGCCAT 1 >Solyc01g015160.1 Unknown Protein (AHRD V1) Length=195 Score = 230 bits (124), Expect = 8e-59 Identities = 137/143 (96%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 4 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCA 63 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 142 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCTGTCTTGCA 83 Query 64 GGTCGTCGCAAGGTTCAGAGACCCAATATTTCCACCAAGGGTCTGTGACGGTCCGTCACA 123 |||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 82 GGTCGTCGCAGAGTTCAGGGACCCAA-ATTTCCACCAAGGGTCTGTGACGGTCCGTCACA 24 Query 124 CCTGTGACGGTCCGTCCTGCCAT 146 ||||||||||||||||||||||| Sbjct 23 CCTGTGACGGTCCGTCCTGCCAT 1 >Solyc09g056020.1 Unknown Protein (AHRD V1) Length=195 Score = 185 bits (100), Expect = 2e-45 Identities = 132/147 (90%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 1 GATTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCT 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 145 GATTCTGCCTGGGATTTGCGCAACCTGTGACGGGCCATCGTGCCTGCGACGGTCCGTCCT 86 Query 61 GCAGGTCGTCGCAAGGTTCAGAGACCCAATATTTCCACC-AAGGGTCTGTGACGGTCCGT 119 |||||||||||||| ||||||||| || |||| || ||| || |||| ||||||| Sbjct 85 GCAGGTCGTCGCAAAGTTCAGAGAATGGAT-TTTC-ACTGAAGTCTCCGTGATGGTCCGT 28 Query 120 CACACCTGTGACGGTCCGTCCTGCCAT 146 ||| ||||||||||||||||||||||| Sbjct 27 CACGCCTGTGACGGTCCGTCCTGCCAT 1 >Solyc00g065510.1 Palmitoyltransferase swf1 (AHRD V1 *-*- B2W9G8_PYRTR) Length=741 Score = 154 bits (83), Expect = 5e-36 Identities = 92/96 (96%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 25 CTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGA 84 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 159 CTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAAGCTCAGAGA 100 Query 85 CCCAATATTTCCACCAAGGGTCTGTGACGGTCCGTC 120 || || |||||||||||||||||||||||||||||| Sbjct 99 CC-AAAATTTCCACCAAGGGTCTGTGACGGTCCGTC 65 >Solyc05g056620.1 macrocalyx mc Length=4788 Score = 147 bits (79), Expect = 9e-34 Identities = 179/227 (79%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 723 AAAGTTAATTTAATTTATTTTTAAAGTTAAATTAGGTTATATTAATTTATTTTTTTAAAT 782 ||||| ||||| ||| ||||| ||| |||||||| | | ||||||| | ||||||| Sbjct 1246 AAAGTCAATTTGATTAATTTTCAAAAGTAAATTAGATCACATTAATTCGATATTTTAAAC 1305 Query 783 AAAAAATTCAGATATTCAAATATTATACGAAAAGTACTATACATTGTAA-TTTTTTACAT 841 |||||| | |||| ||| || | |||| ||||||||||||| ||| || ||||||| || Sbjct 1306 AAAAAAATTAGATGTTCTAAAACTATAAGAAAAGTACTATAAATTACAACTTTTTTATAT 1365 Query 842 ATCAATATGACGAAAAAATATATCCTAAAAGAT-AGTCAAAATTTTCATAGTTTAACTCT 900 | |||| || ||||||||| ||| ||||| | |||||||||||| ||||||| ||| | Sbjct 1366 -T-AATACGATGAAAAAATACATCTTAAAATGTCAGTCAAAATTTTTATAGTTTGACTTT 1423 Query 901 AAAAATGAAAAAC-ATGACAT-TAATAGTGAACGGAAGGAGTATATT 945 ||||| | |||| |||||| ||||| |||||||| ||||| ||| Sbjct 1424 AAAAAC-AGAAACTATGACAAATAATATTGAACGGAGAGAGTA-ATT 1468 >Solyc01g057970.1 Unknown Protein (AHRD V1) Length=165 Score = 132 bits (71), Expect = 2e-29 Identities = 115/136 (85%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 12 GGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTC-GTC 70 ||| || ||||||||| ||||| |||||| ||||||||||||||||||||| | || ||| Sbjct 134 GGAATTACGCAACCTGCGACGGCCCGTCGCGCCTGCGACGGTCCGTCCTGCTGCTCCGTC 75 Query 71 GCAAGGTTCAGAGACCCAATATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGA 130 || ||||||||| |||| || | ||| ||||||||||||||||||||||||||| Sbjct 74 ACAGACTTCAGAGACTCAAT-TTCTCTG-AAGAGTCTGTGACGGTCCGTCACACCTGTGA 17 Query 131 CGGTCCGTCCTGCCAT 146 |||||| ||||||||| Sbjct 16 CGGTCCCTCCTGCCAT 1 >Solyc04g078070.2 Expressed protein having alternate splicing products (AHRD V1 *--- Q75KB8_ORYSJ); contains Interpro domain(s) IPR015023 Protein of unknown function DUF1909 Length=889 Score = 126 bits (68), Expect = 1e-27 Identities = 161/204 (79%), Gaps = 14/204 (7%) Strand=Plus/Plus Query 709 TATTATACTTTTTAAAAGTTAATTTAATTTATTTTTAAAGTTAAATTAGGTTATATTAAT 768 |||| ||||||| |||| ||||||||||| ||||||||| |||||||| | || | Sbjct 80 TATTGTACTTTTAAAAAATTAATTTAATTAATTTTTAAAATTAAATTA----A-ATCACA 134 Query 769 TTATTTTTTTAAATAAAAAATTCAGATATTCAAATATTATACGAAAAGTACTAT-ACATT 827 ||| ||| | ||||||||| |||||||| || |||||| |||| || ||| | ||| Sbjct 135 TTA--ATTTGATATAAAAAAT--AGATATTCTAAAATTATA-AAAAAATATTATAAAATT 189 Query 828 GTAATTTTTTACATATCAATATGACGAAAAAATATATCCTAAAA-GATAGTCAAAATTTT 886 |||||||||||||| ||||||| ||||||||||| |||| | ||||||||||||| Sbjct 190 ACAATTTTTTACATATTAATATGAT-AAAAAATATATTTTAAATTGTTAGTCAAAATTTT 248 Query 887 CATAGTTTAACTCTAAAAAT-GAA 909 ||||| ||||||||||| ||| Sbjct 249 TTAAGTTTGACTCTAAAAATAGAA 272 >Solyc10g074660.1 Unknown Protein (AHRD V1) Length=93 Score = 108 bits (58), Expect = 4e-22 Identities = 58/58 (100%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 4 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTG 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTG 20 >Solyc00g022110.2 Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 Length=1501 Score = 102 bits (55), Expect = 2e-20 Identities = 57/58 (98%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 4 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTG 61 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58 TCTTCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTG 1 >Solyc09g059760.1 Unknown Protein (AHRD V1) Length=75 Score = 99.0 bits (53), Expect = 2e-19 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 4 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCC 59 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 58 TCTGCCTGGGATTTGCGCAACCTGTGACGGGCCGTCGTGCCTGTGACGGTCCGTCC 3 >Solyc11g030740.1 &aposchromo&apos domain containing protein (AHRD V1 **-- Q6L3Q3_SOLDE); contains Interpro domain(s) IPR000953 Chromo domain Length=459 Score = 89.8 bits (48), Expect = 1e-16 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 197 CTAAGTGTTTTGAAACGAGACCCTGCGACGGTCCGTCGTGCCCATGACGTTCCGTCGTGG 256 ||||||||||||||||||||||| |||||||||||||||| ||||||| || ||||||| Sbjct 459 CTAAGTGTTTTGAAACGAGACCCCTCGACGGTCCGTCGTGCTCATGACGGTCTGTCGTGG 400 Query 257 GGTCCGTCG 265 | ||| ||| Sbjct 399 GTTCCATCG 391 >Solyc10g052630.1 Pol polyprotein (AHRD V1 *-*- POL_BAEVM); contains Interpro domain(s) IPR001584 Integrase, catalytic core Length=2430 Score = 82.4 bits (44), Expect = 2e-14 Identities = 99/125 (79%), Gaps = 5/125 (4%) Strand=Plus/Minus Query 19 CGCAACCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTC-GTCGCAAGGT 77 ||| |||||||| || | |||| ||||||||||||| |||||| | || ||| || || Sbjct 2388 CGC-ACCTGTGATGGCCTGTCGCGCCTGCGACGGTCTGTCCTGGTGCTCCGTCACAGAGT 2330 Query 78 TCAGAGACCCAATATTTCCACCAAGGGTCTGTGACGGTCCGTCACACCTGTGACGGTCCG 137 |||||||| |||| | || ||| |||||||||||| |||||| ||| ||||||| || Sbjct 2329 TCAGAGACTCAAT-TCTCTG--AAGAGTCTGTGACGGTACGTCACGCCTATGACGGTTCG 2273 Query 138 TCCTG 142 || || Sbjct 2272 TCTTG 2268 >Solyc01g111180.2 Unknown Protein (AHRD V1) Length=213890 Score = 80.5 bits (43), Expect = 9e-14 Identities = 129/170 (76%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 695 TACT-TTATTTATCATATTATACTTTTTAAAAGTT-AATTTAATTTATTTTTAAAGTTAA 752 |||| |||||| ||||||||||||||| |||| | ||||||||| ||||||||| |||| Sbjct 33666 TACTGTTATTTGTCATATTATACTTTTCGAAAGATAAATTTAATTAATTTTTAAAATTAA 33725 Query 753 ATTAGGTTATATTAATTTATTTTTTTAAATAAAAAATTCAGATATTCAAATATTATACGA 812 | | ||| ||| ||| | | |||| | |||||| | || || ||| |||||| | Sbjct 33726 ACAAAATTACATTTATTCAATAATTTATACAAAAAAA--ATATTTT-AAA-ATTATATTA 33781 Query 813 AAAGTACTATACATTGTAATTTTTTACATATCAATATGACGAAAAAATAT 862 | || |||| ||| |||||||||||||| || ||| ||| |||||| Sbjct 33782 AT--TATTATAAATTACAATTTTTTACATATTTATGTGATGAATAAATAT 33829 >Solyc01g110700.2 Unknown Protein (AHRD V1) Length=219418 Score = 80.5 bits (43), Expect = 9e-14 Identities = 129/170 (76%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 695 TACT-TTATTTATCATATTATACTTTTTAAAAGTT-AATTTAATTTATTTTTAAAGTTAA 752 |||| |||||| ||||||||||||||| |||| | ||||||||| ||||||||| |||| Sbjct 63377 TACTGTTATTTGTCATATTATACTTTTCGAAAGATAAATTTAATTAATTTTTAAAATTAA 63436 Query 753 ATTAGGTTATATTAATTTATTTTTTTAAATAAAAAATTCAGATATTCAAATATTATACGA 812 | | ||| ||| ||| | | |||| | |||||| | || || ||| |||||| | Sbjct 63437 ACAAAATTACATTTATTCAATAATTTATACAAAAAAA--ATATTTT-AAA-ATTATATTA 63492 Query 813 AAAGTACTATACATTGTAATTTTTTACATATCAATATGACGAAAAAATAT 862 | || |||| ||| |||||||||||||| || ||| ||| |||||| Sbjct 63493 AT--TATTATAAATTACAATTTTTTACATATTTATGTGATGAATAAATAT 63540 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 154858985589 Database: Tomato Genome cDNA (ITAG release 2.40) Posted date: Mar 21, 2024 3:33 PM Number of letters in database: 41,981,568 Number of sequences in database: 34,725 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5