BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: S. pimpinellifolium protein sequences LA1589 34,727 sequences; 11,990,163 total letters Query= Untitled_sequence Length=532 Score E Sequences producing significant alignments: (Bits) Value Sopim04g079840LIM domain-binding protein (AHRD V1 *--* B0WXP3_CUL... 651 0.0 Sopim02g089930Homeobox protein LIM-3 (Fragment) (AHRD V1 *--- O42... 592 0.0 Sopim05g052910Actin-binding LIM protein 1 (AHRD V1 *--- ABLM1_MOU... 515 5e-180 Sopim03g079910Zinc ion binding protein (AHRD V1 **-- D7LDT1_ARALY... 501 7e-174 Sopim01g105180LIM zinc-binding protein (AHRD V1 *--* D6TLS9_9CHLR) 197 5e-58 Sopim01g105210Zinc ion binding protein (AHRD V1 **-- B6SPK3_MAIZE) 127 6e-35 Sopim01g105200Zinc ion binding protein (AHRD V1 ***- B6SPK3_MAIZE) 102 2e-25 Sopim04g079850Pentatricopeptide repeat-containing protein (AHRD V... 103 3e-23 >Sopim04g079840 LIM domain-binding protein (AHRD V1 *--* B0WXP3_CULQU); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type Length=487 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/532 (62%), Positives = 401/532 (75%), Gaps = 48/532 (9%) Query 1 MGWFNKIFKGSNQRLRVGNNKHNHNVYYDNYPTASHDDEPSAADTDADNDEPHHTQEPST 60 MGW NKIF+GS+ ++ G YD + H +E +PST Sbjct 1 MGWLNKIFRGSSHKISEGQ--------YD-WRCEGHTEE----------------DDPST 35 Query 61 SEDNTSNDQENEDIDRAIALSLLEENQEQTSISGKYSMPVDEDEQLARALQESMVVGNSP 120 +ED+ S E E+IDRAIA+SL EE Q+ + S + EDEQLARALQES+ V + P Sbjct 36 AEDSWS---EIEEIDRAIAISLSEEEQKGKIVIDSESQ-LKEDEQLARALQESLNVESPP 91 Query 121 RHKSGSTYDNGNAYGAGDLYGNGHMYGGGNVYANGDIYYPRPITFQMDFRICAGCNMEIG 180 +H S + + GN Y NG+ Y+P P + FR+CAGC+ EIG Sbjct 92 QHVSRNDHGGGNVY------------------GNGNFYHPVPFPYSASFRVCAGCSTEIG 133 Query 181 HGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHFIP 240 HGRFL+C+ ++WHPECFRC+ C+QPIS+YEFS SGNYP+HK CY+E YHPKCDVC HFIP Sbjct 134 HGRFLSCMGAVWHPECFRCHACNQPISDYEFSMSGNYPYHKTCYKEHYHPKCDVCKHFIP 193 Query 241 TNHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELNDGRKLCLECLDS 300 TN AGLIEYRAHPFW QKYCP HEHD TPRCCSCERMEPR+TRY+ L+DGRKLCLECLDS Sbjct 194 TNAAGLIEYRAHPFWSQKYCPFHEHDGTPRCCSCERMEPRDTRYIALDDGRKLCLECLDS 253 Query 301 AVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEKNGHYHMPETRGL 360 A+MDT QCQPLY IQ FYEGLNMKVEQ+VPLLLVERQALNEA +GE++G++HMPETRGL Sbjct 254 AIMDTSQCQPLYYDIQEFYEGLNMKVEQKVPLLLVERQALNEAMDGERHGYHHMPETRGL 313 Query 361 CLSEEQTVSTVRKRSKHGTGKWAGNI-TEPYKLTRQCEVTAILILFGLPRLLTGSILAHE 419 CLSEEQT+ST+++R + G G ++ TEPYKLTR+CEVTAILIL+GLPRLLTGSILAHE Sbjct 314 CLSEEQTISTIQRRPRIGAGNRVMDMRTEPYKLTRRCEVTAILILYGLPRLLTGSILAHE 373 Query 420 MMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAELAAGSTNSNAASSSSSSQGLKKGPRS 479 MMHAW+RL+G+RTLSQDVEEGICQV+AH WL+ ++A+ S+++ AS+SS K+G RS Sbjct 374 MMHAWLRLRGYRTLSQDVEEGICQVLAHMWLETQIASISSSNGGASTSSGMSSSKQGIRS 433 Query 480 QYERKLGEFFKHQIESDASPVYGDGFRAGRLAVHKYGLRKTLEHIQMTGRFP 531 +ERKLG+FFKHQIESD SP+YG+GFRAG AV KYGL +TL+HI+MTG FP Sbjct 434 PFERKLGDFFKHQIESDTSPIYGNGFRAGNQAVLKYGLERTLDHIRMTGTFP 485 >Sopim02g089930 Homeobox protein LIM-3 (Fragment) (AHRD V1 *--- O42286_DANRE); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type Length=516 Score = 592 bits (1525), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/542 (57%), Positives = 385/542 (71%), Gaps = 39/542 (7%) Query 1 MGWFNKIFKGSNQRLRVG--NNKHNHNVYYDNYPTASHDDEPSAADTDADNDEPHHTQEP 58 MGW KIF GS R+ G ++ + Y+ Y + + P Sbjct 1 MGWLEKIFGGSTHRISGGQYHSGYEGAQYHGGYDGGQYHSGHEGEQYHGGYQDSTTWDGP 60 Query 59 STSEDNTSNDQENEDIDRAIALSLLEENQEQTSISGKYSMP-VDEDEQLARALQESMVVG 117 +TS D +S D + E+IDRAIALSL EE+Q+ + S P ++EDE LA+ALQES+ V Sbjct 61 TTSVDESS-DFDKEEIDRAIALSLAEEDQKGKKVIE--SEPHLEEDEALAKALQESLNV- 116 Query 118 NSPRHKSGSTYDNGNAYGAGDLYGNGHMYGGGNVYANGDIYYPRPITFQMDFRICAGCNM 177 S YD G+ + + +F +R+CAGCN Sbjct 117 ESSPPPPPPRYDYGSPFPS------------------------LSYSFPYGYRVCAGCNA 152 Query 178 EIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSH 237 EIGHGR+L+C+ ++WHPECFRC+GC+QPIS+YEFS S N P+HK+CY+E++HPKCDVC Sbjct 153 EIGHGRYLSCMGAVWHPECFRCHGCNQPISDYEFSMSDNRPYHKSCYKEQHHPKCDVCKS 212 Query 238 FIPTNHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELNDGRKLCLEC 297 FIPTN AGLIEYRAHPFW+QKYCPSHE D TPRCCSCERMEP + RY+ L DGRKLCLEC Sbjct 213 FIPTNPAGLIEYRAHPFWLQKYCPSHETDGTPRCCSCERMEPVDARYLILEDGRKLCLEC 272 Query 298 LDSAVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEKNGHYHMPET 357 LDS++MDT +CQPLYL+IQ FYEGLNMKVEQ++PLLLVERQALNEA EGEKNGH+HMPET Sbjct 273 LDSSIMDTHECQPLYLEIQEFYEGLNMKVEQQIPLLLVERQALNEAMEGEKNGHHHMPET 332 Query 358 RGLCLSEEQTVSTVRKRSKHGTGKWAGNITEPYKLTRQCEVTAILILFGLPRLLTGSILA 417 RGLCLSEEQT+S++ +R + G + TEPY+L R CEVTAILIL+GLPRLLTGSILA Sbjct 333 RGLCLSEEQTISSISRRPRIGGYRILDMFTEPYRLIRHCEVTAILILYGLPRLLTGSILA 392 Query 418 HEMMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAEL--------AAGSTNSNAASSSSS 469 HEMMHAW+RLKG+ +LS +VEEGICQV+AH WLD+E+ + ST+++++SSSS Sbjct 393 HEMMHAWLRLKGYPSLSPEVEEGICQVLAHMWLDSEIIAGSGSTSTSASTSASSSSSSSP 452 Query 470 SQGLKKGPRSQYERKLGEFFKHQIESDASPVYGDGFRAGRLAVHKYGLRKTLEHIQMTGR 529 S KKG RS +E+KLG+FFKHQIESD S YGDGFR G AV KYGL+ TL+HI++TG Sbjct 453 STSSKKGKRSDFEKKLGDFFKHQIESDTSAAYGDGFREGNKAVLKYGLKTTLDHIRLTGT 512 Query 530 FP 531 +P Sbjct 513 YP 514 >Sopim05g052910 Actin-binding LIM protein 1 (AHRD V1 *--- ABLM1_MOUSE); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type Length=505 Score = 515 bits (1327), Expect = 5e-180, Method: Compositional matrix adjust. Identities = 266/487 (55%), Positives = 337/487 (69%), Gaps = 40/487 (8%) Query 50 DEPHHTQEPSTS-EDNTSNDQENEDIDRAIALSLLEENQEQTSISGKYSMPVDEDEQLAR 108 DE + P+ S +DN+ ++E E++DRAIALSL E+ + Y D+DE LAR Sbjct 54 DENMVWRAPARSMDDNSRTNKEKEELDRAIALSLAEDLRRPKG----YRWRTDQDEDLAR 109 Query 109 ALQESMVVGNSPRHKSGSTYDNGNAYGAGDLYGNGHMYGGGNVYANGDIYYPRPITFQMD 168 +LQ DN N+ Y YA + Y P Sbjct 110 SLQ-----------------DNSNSSSHPPKYAPS--------YAPWE-YNPN------S 137 Query 169 FRICAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERY 228 +R C+GCN +I G +L C+ + +HPECF C C PI+EYEFS SGN +HK+C++E Sbjct 138 YRKCSGCNKDIISGNYLGCMETFFHPECFLCRACGVPITEYEFSLSGNNTYHKSCFKEMT 197 Query 229 HPKCDVCSHFIPTNHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELN 288 HPKC+VC FIPTN AGLIEYR HPFW QKYCP+HE+D T RCCSCER+E RN RY+ L Sbjct 198 HPKCEVCHQFIPTNGAGLIEYRCHPFWSQKYCPAHENDNTKRCCSCERLESRNARYMSLG 257 Query 289 DGRKLCLECLDSAVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEK 348 DGR LCLEC++SA+MDT CQPLY I+++YEG+NMK++Q+VP+LLVER ALNEA EGEK Sbjct 258 DGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMNMKIDQQVPMLLVERHALNEAIEGEK 317 Query 349 NGHYHMPETRGLCLSEEQTVSTVRKRSKHGTGKWAGNITEPYKLTRQCEVTAILILFGLP 408 +G +HMPETRGLCLSEEQTV+++ +R K G G T P KL R+CEVTAIL+++GLP Sbjct 318 HGLHHMPETRGLCLSEEQTVTSILRRPKFGGRGLIGIRTHPQKLIRRCEVTAILVIYGLP 377 Query 409 RLLTGSILAHEMMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAELAAGSTN---SNAAS 465 RLLTG+ILAHE+MHAW+RLKG+R L+ +VEEGICQV++H WL++E+ GS N ++ AS Sbjct 378 RLLTGAILAHELMHAWLRLKGYRNLTPEVEEGICQVLSHMWLESEVVPGSRNMPSTSTAS 437 Query 466 SSSSSQGLKKGPRSQYERKLGEFFKHQIESDASPVYGDGFRAGRLAVHKYGLRKTLEHIQ 525 SSS+ KKG +SQ E KLGEFF HQI DASP YG GFRA AV+KYGLR TL+HI Sbjct 438 SSSTWSSSKKGGKSQAESKLGEFFMHQIAHDASPAYGGGFRAAYAAVNKYGLRSTLDHIH 497 Query 526 MTGRFPV 532 +TG FP+ Sbjct 498 LTGNFPL 504 >Sopim03g079910 Zinc ion binding protein (AHRD V1 **-- D7LDT1_ARALY); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type Length=550 Score = 501 bits (1291), Expect = 7e-174, Method: Compositional matrix adjust. Identities = 271/535 (51%), Positives = 341/535 (64%), Gaps = 62/535 (12%) Query 1 MGWFNKIFKGSNQRLRVGNNKHNHNVYYDNYPTASHDDEPSAADTDADNDEPHHTQEPS- 59 M W KIFKG N+ L P DE + P+ Sbjct 74 MKWLTKIFKG-NRGL------------------------PRGQQPQFLGDENMVWRAPAR 108 Query 60 TSEDNTSNDQENEDIDRAIALSLLEENQEQTSISGKYSMPVDEDEQLARALQESMVVGNS 119 T +D++ +E E++D A A+SL E+ + Y D DE L R+L + + Sbjct 109 TLDDHSKASKEKEELDHATAVSLSEDLKRPG-----YKCRTDNDEDLERSLDHDLSSSSY 163 Query 120 PRHKSGSTYDNGNAYGAGDLYGNGHMYGGGNVYANGDIYYPRPITFQMDFRICAGCNMEI 179 P + Y PR +RIC GC+ +I Sbjct 164 PPYPPPYAPSYAPWE-----------------------YNPR------SYRICNGCHGDI 194 Query 180 GHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHFI 239 G G +L C+ + +HPECF C C PI+E+EFS SGN +HK+C+RE HPKC+VC FI Sbjct 195 GSGNYLGCMGTFFHPECFLCRACGYPITEHEFSLSGNNTYHKSCFREMTHPKCEVCFQFI 254 Query 240 PTNHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELNDGRKLCLECLD 299 PTN AGLIEYR HPFW QKYCPSHEHD T RCCSCER+EP N RYV L DGR LCLEC++ Sbjct 255 PTNAAGLIEYRCHPFWSQKYCPSHEHDVTKRCCSCERLEPWNARYVSLGDGRSLCLECME 314 Query 300 SAVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEKNGHYHMPETRG 359 SA+MDT CQPLY I+++YEG+NMK+EQ+VP+LLVERQALNEA EGEK+G +HMPETRG Sbjct 315 SAIMDTGDCQPLYHAIRDYYEGMNMKIEQQVPMLLVERQALNEAIEGEKHGFHHMPETRG 374 Query 360 LCLSEEQTVSTVRKRSKHGTGKWAGNITEPYKLTRQCEVTAILILFGLPRLLTGSILAHE 419 LCLSEEQTV+++ KR + G + G T P KLTR+CEVTAIL+LFGLPRLLTG+ILAHE Sbjct 375 LCLSEEQTVTSILKRPRMGGREVVGIRTHPQKLTRKCEVTAILVLFGLPRLLTGAILAHE 434 Query 420 MMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAELAAGSTN--SNAASSSSSSQGLKKGP 477 +MHAW+RLKG+R LS +VEEGICQV+++ WL++E+ GS + S + +SSSS KKG Sbjct 435 LMHAWLRLKGYRNLSLEVEEGICQVLSYMWLESEVMPGSRDMPSTSTASSSSMSSTKKGV 494 Query 478 RSQYERKLGEFFKHQIESDASPVYGDGFRAGRLAVHKYGLRKTLEHIQMTGRFPV 532 +S E KLGEFF HQI D SP YG GFR+ AV+KYGLR TL+HI++TG FP+ Sbjct 495 KSGVENKLGEFFMHQIAHDTSPAYGGGFRSANEAVNKYGLRCTLDHIRLTGSFPL 549 >Sopim01g105180 LIM zinc-binding protein (AHRD V1 *--* D6TLS9_9CHLR) Length=390 Score = 197 bits (502), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 112/301 (37%), Positives = 162/301 (54%), Gaps = 27/301 (9%) Query 232 CDVCSHFIPTNHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELNDGR 291 CDVC I + E+ +W Q H D TP CC+C R + + RY+ L+DGR Sbjct 114 CDVCEEQISS------EWLRCTYWGQTVRKKHISDGTPCCCACSRFKIGDIRYITLSDGR 167 Query 292 KLCLECLDSAVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLVERQALNEAREGEKNGH 351 +LC +C +AVMD C+PL ++ F++GLNMK+ +P+LLV+++ + Sbjct 168 QLCPDCHYTAVMDPEDCKPLLDEVHRFFKGLNMKIRYYIPILLVDQEEIIRI-------- 219 Query 352 YHMPETRGLCLSEEQTVSTVRKRSKH-GTGKWAGNITEPYKLTRQCEVTAILILFGLPRL 410 H G + E+ + V SK G+ + E +L +V A+L+L+G P+L Sbjct 220 -HKKSILGSTIYEKFELEAVNYVSKSIQRGENVEVVKEVEQLPPGRKVRAVLLLYGFPKL 278 Query 411 LTGSILAHEMMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAELAAGSTNSNAASSSSSS 470 GS LAHE+MHAWMR++G+R LS ++ EG+ QVMAHKWL+ + G S Sbjct 279 AIGSTLAHELMHAWMRVQGYRGLSLNIAEGLSQVMAHKWLEWQSFTGHDYMKGTSE---- 334 Query 471 QGLKKGPRSQYERKLGEFFKHQIESDASPVYGDGFRAGRLAVHKYGLRKTLEHIQMTGRF 530 ++Q+ R L EF K IE S YG GFR + AV +YGLR TL+HI G+ Sbjct 335 -------KAQFLRNLKEFMKDGIERRYSEAYGHGFREAKWAVERYGLRYTLKHIARKGKL 387 Query 531 P 531 P Sbjct 388 P 388 >Sopim01g105210 Zinc ion binding protein (AHRD V1 **-- B6SPK3_MAIZE) Length=122 Score = 127 bits (319), Expect = 6e-35, Method: Composition-based stats. Identities = 62/131 (47%), Positives = 82/131 (63%), Gaps = 11/131 (8%) Query 401 ILILFGLPRLLTGSILAHEMMHAWMRLKGFRTLSQDVEEGICQVMAHKWLDAELAAGSTN 460 +L+L+GLP+L G+ LAHEMMHAWM+++G+ LS ++ EGIC+VMAHKWL+ + G N Sbjct 1 MLLLYGLPKLDLGATLAHEMMHAWMKIEGYEGLSLNIAEGICEVMAHKWLEWQSFTGDEN 60 Query 461 SNAASSSSSSQGLKKGPRSQYERKLGEFFKHQIESDASPVYGDGFRAGRLAVHKYGLRKT 520 S ++Q+ R L EF K IE S YG GFR + AV +YGLR T Sbjct 61 IKGTSE-----------KAQFLRNLKEFLKDGIEKSHSEAYGHGFREAKWAVERYGLRCT 109 Query 521 LEHIQMTGRFP 531 LEHI TG+ P Sbjct 110 LEHISHTGKLP 120 >Sopim01g105200 Zinc ion binding protein (AHRD V1 ***- B6SPK3_MAIZE) Length=163 Score = 102 bits (254), Expect = 2e-25, Method: Composition-based stats. Identities = 46/122 (38%), Positives = 72/122 (59%), Gaps = 7/122 (6%) Query 232 CDVCSHFIPTNHAGLIEYRAHPFWVQKYCPSHEHDATPRCCSCERMEPRNTRYVELNDGR 291 CDVC I + ++ +W Q YC H D TP+CCSC R++ + +Y+ LNDGR Sbjct 20 CDVCEEEICS------DWSRCTYWGQTYCEKHTSDGTPQCCSCSRLKIGDLKYIILNDGR 73 Query 292 KLCLECLDSAVMDTMQCQPLYLQIQNFYEGLNMKVEQEVPLLLV-ERQALNEAREGEKNG 350 KLC +C +AV D C+PL ++ F++G+NMK+ +P+LLV E++ + + + G Sbjct 74 KLCPDCHYTAVTDPGDCKPLLDEVHRFFKGMNMKIRYYIPILLVDEKEMIKNVEKVGRTG 133 Query 351 HY 352 Y Sbjct 134 DY 135 >Sopim04g079850 Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHC1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat Length=932 Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/136 (46%), Positives = 75/136 (55%), Gaps = 34/136 (25%) Query 390 YKLTRQCEVTAILILFGLP----------RLLTGSILAHEMMHAWMRLKGFRTLSQDVEE 439 YK+ + E +I +LF + R LTGSI AHEMMHAW+RL+G+RTLSQDVEE Sbjct 820 YKIGKTSEAVSI-VLFMMEHPVTVAVSEWRFLTGSIFAHEMMHAWLRLRGYRTLSQDVEE 878 Query 440 GICQVMAHKWLDAELAAGSTNSNAASSSSSSQGLKKGPRSQYERKLGEFFKHQIESDASP 499 IC+ S +K G S +ERKLG+ FKHQ ESD SP Sbjct 879 DICR-----------------------YSRVIIIKAGIGSPFERKLGDSFKHQNESDTSP 915 Query 500 VYGDGFRAGRLAVHKY 515 +YG FRAG AV KY Sbjct 916 IYGYRFRAGNQAVLKY 931 Lambda K H a alpha 0.317 0.134 0.418 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 3609297978 Database: S. pimpinellifolium protein sequences LA1589 Posted date: Mar 21, 2024 4:05 PM Number of letters in database: 11,990,163 Number of sequences in database: 34,727 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40