BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: Tomato Genome protein sequences (ITAG release 2.40) 34,725 sequences; 11,955,943 total letters Query= Untitled_sequence Length=258 Score E Sequences producing significant alignments: (Bits) Value Solyc01g079870.2CONSTANS interacting protein 2b cip2b 527 0.0 Solyc06g072040.1CONSTANS interacting protein 2a CIP2a 205 2e-66 Solyc03g110860.2Nuclear transcription factor Y subunit C-1 IPR003... 204 4e-66 Solyc03g111450.1Nuclear transcription factor Y subunit C-2 IPR003... 145 9e-42 Solyc03g111460.1Nuclear transcription factor Y subunit C-2 IPR003... 139 6e-40 Solyc03g110840.1Nuclear transcription factor Y subunit C-1 IPR003... 119 2e-33 Solyc11g016920.1Nuclear transcription factor Y subunit C-2 IPR003... 114 6e-32 Solyc08g007960.1Nuclear transcription factor Y subunit C-9 IPR003... 112 1e-31 Solyc03g110850.1Nuclear transcription factor Y subunit C-1 IPR003... 112 1e-30 Solyc02g021330.1Nuclear transcription factor Y subunit C-1 IPR003... 110 3e-30 Solyc00g107050.1Nuclear transcription factor Y subunit C-1 IPR003... 106 8e-29 Solyc03g111470.1Nuclear transcription factor Y subunit C-2 IPR003... 105 6e-27 Solyc02g091030.2Nuclear transcription factor Y subunit C-2 IPR003... 100 4e-24 Solyc11g016910.1Nuclear transcription factor Y subunit C-2 IPR009... 63.9 3e-13 Solyc11g072150.1Nuclear transcription factor Y subunit C-1 IPR003... 61.6 4e-11 >Solyc01g079870.2 CONSTANS interacting protein 2b cip2b Length=258 Score = 527 bits (1358), Expect = 0.0, Method: Compositional matrix adjust. Identities = 258/258 (100%), Positives = 258/258 (100%), Gaps = 0/258 (0%) Query 1 MDQHGNGQPPGIGVVTSSAPIYGAPYQANQMAGPSPPAVSAGAIQSPQAAGLAASSAQMA 60 MDQHGNGQPPGIGVVTSSAPIYGAPYQANQMAGPSPPAVSAGAIQSPQAAGLAASSAQMA Sbjct 1 MDQHGNGQPPGIGVVTSSAPIYGAPYQANQMAGPSPPAVSAGAIQSPQAAGLAASSAQMA 60 Query 61 QHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEHVTDFKNHSLPLARIKKIMKADEDVRM 120 QHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEHVTDFKNHSLPLARIKKIMKADEDVRM Sbjct 61 QHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEHVTDFKNHSLPLARIKKIMKADEDVRM 120 Query 121 ISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 180 ISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR Sbjct 121 ISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 180 Query 181 EDLKDEVLATIPRGTLPVGGPTEGLPFYYGMPPQSAQPIGAPGMYMGKPVDQALYAQQPR 240 EDLKDEVLATIPRGTLPVGGPTEGLPFYYGMPPQSAQPIGAPGMYMGKPVDQALYAQQPR Sbjct 181 EDLKDEVLATIPRGTLPVGGPTEGLPFYYGMPPQSAQPIGAPGMYMGKPVDQALYAQQPR 240 Query 241 PYMAQPIWPQQQQPPSDS 258 PYMAQPIWPQQQQPPSDS Sbjct 241 PYMAQPIWPQQQQPPSDS 258 >Solyc06g072040.1 CONSTANS interacting protein 2a CIP2a Length=232 Score = 205 bits (522), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 108/170 (64%), Positives = 125/170 (74%), Gaps = 13/170 (8%) Query 84 FWANQYQEIEHVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLR 143 FW Q QEIE V DFKNH LPLARIKKIMKADEDVRMISAEAPV+FA+ACE+FILELT+R Sbjct 48 FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIR 107 Query 144 AWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLATIPRGTLPVGGPTE 203 +W H EENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+++KDE + P VG Sbjct 108 SWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEGVGLGPG---IVGSTAS 164 Query 204 GLPFYYGMPPQSAQPIGAP-GMYMGKP----VDQALYAQQPRPYMAQPIW 248 G+P+YY P QP AP G+ +G+P VD ++Y P Q +W Sbjct 165 GVPYYY---PPMGQP--APGGVMLGRPAVPGVDPSMYVHPPPSQAWQSVW 209 >Solyc03g110860.2 Nuclear transcription factor Y subunit C-1 IPR003958 Transcription factor CBF_NF-Y_archaeal histone Length=230 Score = 204 bits (520), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 105/163 (64%), Positives = 122/163 (75%), Gaps = 11/163 (7%) Query 83 TFWANQYQEIEHVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTL 142 FW Q +EIE V DFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+ Sbjct 43 VFWTYQRKEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTI 102 Query 143 RAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLATIPRGTLPVGGPT 202 R+W H EENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+++K+E G VG Sbjct 103 RSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEEGAGL---GPGIVGSTA 159 Query 203 EGLPFYYGMPPQSAQPIGAPGMYMGKP----VDQALYAQQPRP 241 G+P+YY P QP PG+ MG+P VD ++Y Q P P Sbjct 160 SGVPYYY---PPMGQP-APPGVMMGRPAMPGVDPSMYVQPPPP 198 >Solyc03g111450.1 Nuclear transcription factor Y subunit C-2 IPR003958 Transcription factor CBF_NF-Y_archaeal histone Length=318 Score = 145 bits (365), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 69/153 (45%), Positives = 103/153 (67%), Gaps = 6/153 (4%) Query 77 LQQQLQTFWANQYQEIEHVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMF 136 +++Q++ FW Q +EIE + DFK+H P++RIK+I+K++ + +SAE P++F++ACE+F Sbjct 78 VEEQMRIFWNCQREEIEEMDDFKHHHFPISRIKRIIKSENNAIKLSAETPILFSKACELF 137 Query 137 ILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLATIPRGTL 196 +LELTLR+W H ++N R +L+K D AAAI RT++FDFL D+VP ED +EV G + Sbjct 138 VLELTLRSWFHAQQNNRGSLKKTDFAAAIRRTEVFDFLADVVP-EDEINEVATGFGPGMV 196 Query 197 PVGGPTEGLPFYYGMPPQSAQPIGAPGMYMGKP 229 GPT G F Y PP + PG+ G P Sbjct 197 ---GPTVGGGFPYFYPPMGL--LAMPGVMPGGP 224 >Solyc03g111460.1 Nuclear transcription factor Y subunit C-2 IPR003958 Transcription factor CBF_NF-Y_archaeal histone Length=288 Score = 139 bits (350), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 65/134 (49%), Positives = 96/134 (72%), Gaps = 3/134 (2%) Query 77 LQQQLQTFWANQYQEIEHVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMF 136 LQQQL+ FWA Q QEI + DF+ HSLP++RIKKIMK+D++VRMISAE+P++ A+ACE+F Sbjct 40 LQQQLRLFWAAQLQEIIQIRDFRGHSLPISRIKKIMKSDKEVRMISAESPILLAKACELF 99 Query 137 ILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLATIPRGTL 196 I ELT R+W +E +R+TL+K D+ + T++FDFLVD++ ++ ++E +P G L Sbjct 100 IQELTHRSWLKAQECQRQTLKKIDLFTVLKETELFDFLVDVISMDEPEEEAPTYVP-GML 158 Query 197 PVGGPTEGLPFYYG 210 G + +YY Sbjct 159 --GNIPNRISYYYS 170 >Solyc03g110840.1 Nuclear transcription factor Y subunit C-1 IPR003958 Transcription factor CBF_NF-Y_archaeal histone Length=162 Score = 119 bits (297), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 53/101 (52%), Positives = 76/101 (75%), Gaps = 1/101 (1%) Query 81 LQTFWANQYQEIEHVTDFKNHSL-PLARIKKIMKADEDVRMISAEAPVVFARACEMFILE 139 L+ FW +Q ++E++ DFK+ L P RIKKIMK +EDVRM++ E+PV+ A+ACE+FI + Sbjct 32 LEMFWKSQQSQMENIKDFKDRLLLPPTRIKKIMKKNEDVRMVAGESPVLLAKACELFIQD 91 Query 140 LTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 180 LTLR+ H +EN RR L+K+D+ I +TD FDFL+D+V R Sbjct 92 LTLRSSIHAQENHRRILKKDDLTDVIVQTDYFDFLLDVVHR 132 >Solyc11g016920.1 Nuclear transcription factor Y subunit C-2 IPR003958 Transcription factor CBF_NF-Y_archaeal histone Length=138 Score = 114 bits (285), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 53/106 (50%), Positives = 78/106 (74%), Gaps = 6/106 (6%) Query 64 LAYQHIHQQQQQQLQQQLQTFWANQYQEIEHVTDFKNHSLP-LARIKKIMKADEDVRMIS 122 LA H+ ++Q++ L+ FW ++ +E+E+V DFK++ LP + RIKKIMK D+DVRMI+ Sbjct 21 LALPHLEKKQEK-----LEMFWIDKQREMENVIDFKSNLLPSINRIKKIMKTDKDVRMIA 75 Query 123 AEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRT 168 E+PV+ A+ACE+FI ELTLR+W TE+N RR L+K+D+ I T Sbjct 76 TESPVLLAKACELFIQELTLRSWFKTEKNHRRILKKDDVTDVIMET 121 >Solyc08g007960.1 Nuclear transcription factor Y subunit C-9 IPR003958 Transcription factor CBF_NF-Y_archaeal histone Length=124 Score = 112 bits (281), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 57/100 (57%), Positives = 73/100 (73%), Gaps = 14/100 (14%) Query 101 HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRAW-----NHTEENKRR 154 HSLPLARIKKIMK + +DV+MIS EAP+VF++ACE+FI ELT RAW N+ E +R Sbjct 18 HSLPLARIKKIMKKSSDDVKMISGEAPIVFSKACELFIEELTKRAWIIMTNNNMHEKRRS 77 Query 155 TLQKNDIAAAITRTDIFDFLVDIVPR--------EDLKDE 186 TLQK+D+A+AI TD+FDFLV++V E+L DE Sbjct 78 TLQKDDVASAIIATDVFDFLVNLVSNTTHDHNNCEELNDE 117 >Solyc03g110850.1 Nuclear transcription factor Y subunit C-1 IPR003958 Transcription factor CBF_NF-Y_archaeal histone Length=163 Score = 112 bits (279), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 49/92 (53%), Positives = 72/92 (78%), Gaps = 1/92 (1%) Query 75 QQLQQQLQTFWANQYQEIEHVTDFKNHSLP-LARIKKIMKADEDVRMISAEAPVVFARAC 133 ++ Q++L+ FW ++ +E+E+V DFK++ LP + RIKKIMK D+DVRMI+ E+PV+ A+AC Sbjct 27 EKKQEKLEMFWTDKRREMENVIDFKSNLLPRIHRIKKIMKTDKDVRMIATESPVLLAKAC 86 Query 134 EMFILELTLRAWNHTEENKRRTLQKNDIAAAI 165 E+FI ELTLR+W EEN RR L+K+D+ I Sbjct 87 ELFIQELTLRSWFKAEENHRRILKKDDVTDVI 118 >Solyc02g021330.1 Nuclear transcription factor Y subunit C-1 IPR003958 Transcription factor CBF_NF-Y_archaeal histone Length=153 Score = 110 bits (275), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 58/129 (45%), Positives = 86/129 (67%), Gaps = 6/129 (5%) Query 52 LAASSAQMAQH-QLAYQHIHQQQQQQLQQQLQTFWANQYQEIEHVTDFKN-HSLPLARIK 109 L ++ Q + H LA +I + +Q+QL+ FW NQ +EIE+ +FKN H LP IK Sbjct 8 LVVNATQSSTHPTLAQLNIVKNKQEQLEM----FWTNQRREIENDNEFKNNHLLPPNLIK 63 Query 110 KIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTD 169 K+MK DED +MI+AE+PV+ A+ CE+FI ELTLR+W + +E + L+K+D+ I +TD Sbjct 64 KLMKTDEDDQMIAAESPVLLAKTCELFIQELTLRSWLNAQEKHQHILKKDDVTDVIIQTD 123 Query 170 IFDFLVDIV 178 DFL+ +V Sbjct 124 NLDFLLVVV 132 >Solyc00g107050.1 Nuclear transcription factor Y subunit C-1 IPR003958 Transcription factor CBF_NF-Y_archaeal histone Length=144 Score = 106 bits (264), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 51/124 (41%), Positives = 80/124 (65%), Gaps = 2/124 (2%) Query 55 SSAQMAQHQLAYQHIHQQQQQQLQQQ-LQTFWANQYQEIEHVTDFKNHSLPL-ARIKKIM 112 S+ Q AY + ++++Q+ ++ FW +Q +E+E + +FKN+ L RIK IM Sbjct 8 STVNATQSVDAYSTMSHLNIEKIEQEYMEMFWTDQEREMEKIDNFKNNLLVSPNRIKNIM 67 Query 113 KADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFD 172 K ++DVR I++E+PV+ A+AC+ FI ELTLR+W + +EN RR L+K D+ I R D + Sbjct 68 KTNKDVRRITSESPVLLAKACDFFIQELTLRSWLNAQENHRRILKKKDVTDVIKRNDNLN 127 Query 173 FLVD 176 FL D Sbjct 128 FLFD 131 >Solyc03g111470.1 Nuclear transcription factor Y subunit C-2 IPR003958 Transcription factor CBF_NF-Y_archaeal histone Length=273 Score = 105 bits (261), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 46/78 (59%), Positives = 61/78 (78%), Gaps = 0/78 (0%) Query 84 FWANQYQEIEHVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLR 143 FWA Q QEI + DF+ HSLP+ RIKKIMK+D++VRMISAE+P++ +ACE+FI ELT R Sbjct 57 FWAAQLQEIMQIGDFEGHSLPIFRIKKIMKSDKEVRMISAESPILLDKACELFIQELTHR 116 Query 144 AWNHTEENKRRTLQKNDI 161 +W +E +RRTL+K D Sbjct 117 SWLKAQECQRRTLKKIDF 134 >Solyc02g091030.2 Nuclear transcription factor Y subunit C-2 IPR003958 Transcription factor CBF_NF-Y_archaeal histone Length=677 Score = 100 bits (250), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 77/123 (63%), Gaps = 0/123 (0%) Query 75 QQLQQQLQTFWANQYQEIEHVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACE 134 Q L++ L FW Q +EI + +P++RI++ MK+++ V+M+SA + V+ ++A E Sbjct 24 QLLKENLSCFWNQQKEEILRADPKRKPEMPISRIRRAMKSNDQVKMVSATSTVLLSKAIE 83 Query 135 MFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLATIPRG 194 M I++LTLRAW ++ K RTL++ D A AI ++FDFL DIVP + K + A +G Sbjct 84 MLIMDLTLRAWMQADKGKCRTLKRYDFARAIRDEELFDFLSDIVPLQTYKVQKDANDGQG 143 Query 195 TLP 197 P Sbjct 144 NEP 146 >Solyc11g016910.1 Nuclear transcription factor Y subunit C-2 IPR009072 Histone-fold Length=93 Score = 63.9 bits (154), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 54/85 (64%), Gaps = 2/85 (2%) Query 55 SSAQMAQHQLAYQHIHQQQQQQLQQQ-LQTFWANQYQEIEHVTDFKNHSLPL-ARIKKIM 112 S+ Q AY + ++++Q+ ++ FW +Q +E+E + +FKN+ L IK IM Sbjct 8 STVNATQSVDAYSTMSHLNIEKIEQEYMEMFWTDQEREMEKIDNFKNNLLVSPNHIKNIM 67 Query 113 KADEDVRMISAEAPVVFARACEMFI 137 K ++DVR I++E+PV+ A+AC+ FI Sbjct 68 KTNKDVRRITSESPVLLAKACDFFI 92 >Solyc11g072150.1 Nuclear transcription factor Y subunit C-1 IPR003958 Transcription factor CBF_NF-Y_archaeal histone Length=305 Score = 61.6 bits (148), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 0/78 (0%) Query 103 LPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIA 162 P ARIKKIM+ADEDV I+ P++ ++A E+F+ +L R + T + +T+ + Sbjct 9 FPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKKGAKTMNSFHLK 68 Query 163 AAITRTDIFDFLVDIVPR 180 I ++FDFL D+V R Sbjct 69 HCIQSFNVFDFLKDVVSR 86 Lambda K H a alpha 0.317 0.131 0.394 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 1382606498 Database: Tomato Genome protein sequences (ITAG release 2.40) Posted date: Mar 21, 2024 3:33 PM Number of letters in database: 11,955,943 Number of sequences in database: 34,725 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40