BLASTP 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: Potato PGSC DM v3.4 protein sequences 56,218 sequences; 16,895,844 total letters Query= Untitled_sequence Length=561 Score E Sequences producing significant alignments: (Bits) Value PGSC0003DMP400020915PGSC0003DMT400030799 DWARF1/DIMINUTO 919 0.0 PGSC0003DMP400036652PGSC0003DMT400054477 DWARF1/DIMINUTO 899 0.0 PGSC0003DMP400036651PGSC0003DMT400054476 DWARF1/DIMINUTO 899 0.0 PGSC0003DMP400036653PGSC0003DMT400054478 DWARF1/DIMINUTO 191 1e-58 PGSC0003DMP400007657PGSC0003DMT400010990 DWARF1/DIMINUTO 127 3e-35 >PGSC0003DMP400020915 PGSC0003DMT400030799 DWARF1/DIMINUTO Length=567 Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/564 (78%), Positives = 499/564 (88%), Gaps = 4/564 (1%) Query 1 MSDLQTPLVRPKRKKTWVDYFVKFRWIIVIFIVLPFSATFYFLIYLGDMWSESKSFEKRQ 60 M+D+Q P +RPKRKK +D V+FRWI+VIF+VLP S +YF IYLGD+ SE KS+++RQ Sbjct 1 MADVQAP-IRPKRKKNIMDLLVQFRWIVVIFVVLPLSFLYYFSIYLGDVRSECKSYKQRQ 59 Query 61 KEHDENVKKVIKRLKGRDASKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLGEFRNILE 120 KEHDENVKKV+KRLK R+ASKDGLVCTARKPW+AVGMRNVDYKRARHFEVDL FRN+L Sbjct 60 KEHDENVKKVVKRLKDRNASKDGLVCTARKPWVAVGMRNVDYKRARHFEVDLSPFRNVLN 119 Query 121 INKEKMTARVEPLVNMGQISRATVPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLF 180 I+ E+M A+VEPLVNMGQISR TVPMN+SLAVVAELDDLTVGGLINGYGIEGSSHIYGLF Sbjct 120 IDTERMIAKVEPLVNMGQISRVTVPMNVSLAVVAELDDLTVGGLINGYGIEGSSHIYGLF 179 Query 181 ADTVEAYEIVLAGGELVRATRDNEYSDLYYAIPWSQGTLGLLVAAEIRLIKVKEYMRLTY 240 +DTV +YE+VLA G++VRAT+DNEYSDL+YAIPWSQGTLGLLV+AEI+LI +KEYM+LTY Sbjct 180 SDTVVSYEVVLADGQVVRATKDNEYSDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTY 239 Query 241 IPVKGDLQALAQGYIDSFAPKDGD---KSKIPDFVEGMVYNPTEGVMMVGTYASKEEAKK 297 PV G+L+ +AQ YIDSF+PKDGD + K+PDFVE MVY PTE V M G YASKEEAKK Sbjct 240 KPVVGNLKEIAQAYIDSFSPKDGDQDNREKVPDFVETMVYTPTEAVCMTGRYASKEEAKK 299 Query 298 KGNKINNVGWWFKPWFYQHAQTALKKGQFVEYIPTREYYHRHTRCLYWEGKLILPFGDQF 357 KGN INNVGWWFK WFYQHAQTALKKG+FVEYIPTREYYHRHTRCLYWEGKLILPFGDQ+ Sbjct 300 KGNVINNVGWWFKTWFYQHAQTALKKGEFVEYIPTREYYHRHTRCLYWEGKLILPFGDQW 359 Query 358 WFRYLLGWLMPPKVSLLKATQGEAIRNYYHDMHVIQDMLVPLYKVGDALEWVHREMEVYP 417 WFR+ GW MPPKVSLLKATQGE IRNYYH+ HVIQDMLVPLYKVGDALEWV+REMEVYP Sbjct 360 WFRFFFGWAMPPKVSLLKATQGEYIRNYYHENHVIQDMLVPLYKVGDALEWVNREMEVYP 419 Query 418 IWLCPHKLFKQPIKGQIYPEPGFEYENRQGDTEDAQMYTDVGVYYAPGCVLRGEEFDGSE 477 +WLCPH+L++ P+K +YPEPGFE RQGDT+ AQMYTDVGVYYAPG +LRGE FDG E Sbjct 420 LWLCPHRLYRLPLKTMVYPEPGFELHKRQGDTKYAQMYTDVGVYYAPGPILRGEVFDGIE 479 Query 478 AVRRMEKWLIENHGFQPQYAVSELDEKSFWRMFNGELYEECRKKYRAIGTFMSVYYKSKK 537 AVR++E WLIENHGFQPQYAVSEL EK+FWRMF+G LYE CRKKYRAIGTFMSVYYKSKK Sbjct 480 AVRKLESWLIENHGFQPQYAVSELTEKNFWRMFDGSLYENCRKKYRAIGTFMSVYYKSKK 539 Query 538 GRKTEKEVREAEQAHLETAYAEAD 561 G+KTEKEV++AEQ E E D Sbjct 540 GKKTEKEVQDAEQETAEVETPEVD 563 >PGSC0003DMP400036652 PGSC0003DMT400054477 DWARF1/DIMINUTO Length=570 Score = 899 bits (2324), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/566 (75%), Positives = 492/566 (87%), Gaps = 5/566 (1%) Query 1 MSDLQTP--LVRPKRKKTWVDYFVKFRWIIVIFIVLPFSATFYFLIYLGDMWSESKSFEK 58 MSD + P V P+RK VD+ + FRWIIVIF VLPFS +YF IYLGD+ SE KS+++ Sbjct 1 MSDAKAPAATVHPRRKIQLVDFLLSFRWIIVIFFVLPFSFLYYFSIYLGDLKSEKKSYKQ 60 Query 59 RQKEHDENVKKVIKRLKGRDASKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLGEFRNI 118 RQ EHDENVK+V+KRL+ R+A KDGLVCTAR PW+ VGMRNVDYKRARHFEVDL +FRNI Sbjct 61 RQMEHDENVKEVVKRLEQRNAEKDGLVCTARPPWVVVGMRNVDYKRARHFEVDLSKFRNI 120 Query 119 LEINKEKMTARVEPLVNMGQISRATVPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYG 178 L+I+ E+M A+VEPLVNMGQ+SR +PMNLSLAV+AELDDLTVGGLING+G+EGSSHI+G Sbjct 121 LDIDTERMVAKVEPLVNMGQMSRVAIPMNLSLAVLAELDDLTVGGLINGFGVEGSSHIFG 180 Query 179 LFADTVEAYEIVLAGGELVRATRDNEYSDLYYAIPWSQGTLGLLVAAEIRLIKVKEYMRL 238 LF+DTV A E+VLA G++VRAT+DNEYSDL+YAIPWSQGTLGLLV+AEI+LI V +Y++L Sbjct 181 LFSDTVVALEVVLADGKVVRATKDNEYSDLFYAIPWSQGTLGLLVSAEIKLIPVDQYVKL 240 Query 239 TYIPVKGDLQALAQGYIDSFAPKDGDK---SKIPDFVEGMVYNPTEGVMMVGTYASKEEA 295 TY PV+G+L+ LAQ Y DSFAPKDGD+ SK+P+ VEGM+Y PTEGVMM G YAS+ EA Sbjct 241 TYKPVRGNLKELAQAYADSFAPKDGDQDNPSKVPEMVEGMIYGPTEGVMMTGMYASRNEA 300 Query 296 KKKGNKINNVGWWFKPWFYQHAQTALKKGQFVEYIPTREYYHRHTRCLYWEGKLILPFGD 355 K++GN INN GWWFKPWFYQHAQTALK+G+FVEYIPTR+YYHRHTR LYWEGKLILPFGD Sbjct 301 KRRGNVINNYGWWFKPWFYQHAQTALKRGEFVEYIPTRDYYHRHTRSLYWEGKLILPFGD 360 Query 356 QFWFRYLLGWLMPPKVSLLKATQGEAIRNYYHDMHVIQDMLVPLYKVGDALEWVHREMEV 415 QFWFR+LLGWLMPPK++LLKATQ EAIRNYYHD HVIQD+LVPLYKVGD LEWVHREMEV Sbjct 361 QFWFRFLLGWLMPPKIALLKATQSEAIRNYYHDHHVIQDLLVPLYKVGDCLEWVHREMEV 420 Query 416 YPIWLCPHKLFKQPIKGQIYPEPGFEYENRQGDTEDAQMYTDVGVYYAPGCVLRGEEFDG 475 YPIWLCPH+++K P++ IYPEPGFE RQGDTE AQMYTD+GVYY PG VLRGE FDG Sbjct 421 YPIWLCPHRIYKLPVRPMIYPEPGFEKHKRQGDTEYAQMYTDIGVYYVPGAVLRGEPFDG 480 Query 476 SEAVRRMEKWLIENHGFQPQYAVSELDEKSFWRMFNGELYEECRKKYRAIGTFMSVYYKS 535 SE R++E WLIENHGFQ QYAV+EL EK+FWRMF+ LYE+CR+KY+AIGTFMSVYYKS Sbjct 481 SEKCRQLELWLIENHGFQAQYAVTELTEKNFWRMFDNSLYEQCRRKYKAIGTFMSVYYKS 540 Query 536 KKGRKTEKEVREAEQAHLETAYAEAD 561 KKGRKTEKEV+EAEQ E EAD Sbjct 541 KKGRKTEKEVQEAEQEKAEQETPEAD 566 >PGSC0003DMP400036651 PGSC0003DMT400054476 DWARF1/DIMINUTO Length=570 Score = 899 bits (2324), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/566 (75%), Positives = 492/566 (87%), Gaps = 5/566 (1%) Query 1 MSDLQTP--LVRPKRKKTWVDYFVKFRWIIVIFIVLPFSATFYFLIYLGDMWSESKSFEK 58 MSD + P V P+RK VD+ + FRWIIVIF VLPFS +YF IYLGD+ SE KS+++ Sbjct 1 MSDAKAPAATVHPRRKIQLVDFLLSFRWIIVIFFVLPFSFLYYFSIYLGDLKSEKKSYKQ 60 Query 59 RQKEHDENVKKVIKRLKGRDASKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLGEFRNI 118 RQ EHDENVK+V+KRL+ R+A KDGLVCTAR PW+ VGMRNVDYKRARHFEVDL +FRNI Sbjct 61 RQMEHDENVKEVVKRLEQRNAEKDGLVCTARPPWVVVGMRNVDYKRARHFEVDLSKFRNI 120 Query 119 LEINKEKMTARVEPLVNMGQISRATVPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYG 178 L+I+ E+M A+VEPLVNMGQ+SR +PMNLSLAV+AELDDLTVGGLING+G+EGSSHI+G Sbjct 121 LDIDTERMVAKVEPLVNMGQMSRVAIPMNLSLAVLAELDDLTVGGLINGFGVEGSSHIFG 180 Query 179 LFADTVEAYEIVLAGGELVRATRDNEYSDLYYAIPWSQGTLGLLVAAEIRLIKVKEYMRL 238 LF+DTV A E+VLA G++VRAT+DNEYSDL+YAIPWSQGTLGLLV+AEI+LI V +Y++L Sbjct 181 LFSDTVVALEVVLADGKVVRATKDNEYSDLFYAIPWSQGTLGLLVSAEIKLIPVDQYVKL 240 Query 239 TYIPVKGDLQALAQGYIDSFAPKDGDK---SKIPDFVEGMVYNPTEGVMMVGTYASKEEA 295 TY PV+G+L+ LAQ Y DSFAPKDGD+ SK+P+ VEGM+Y PTEGVMM G YAS+ EA Sbjct 241 TYKPVRGNLKELAQAYADSFAPKDGDQDNPSKVPEMVEGMIYGPTEGVMMTGMYASRNEA 300 Query 296 KKKGNKINNVGWWFKPWFYQHAQTALKKGQFVEYIPTREYYHRHTRCLYWEGKLILPFGD 355 K++GN INN GWWFKPWFYQHAQTALK+G+FVEYIPTR+YYHRHTR LYWEGKLILPFGD Sbjct 301 KRRGNVINNYGWWFKPWFYQHAQTALKRGEFVEYIPTRDYYHRHTRSLYWEGKLILPFGD 360 Query 356 QFWFRYLLGWLMPPKVSLLKATQGEAIRNYYHDMHVIQDMLVPLYKVGDALEWVHREMEV 415 QFWFR+LLGWLMPPK++LLKATQ EAIRNYYHD HVIQD+LVPLYKVGD LEWVHREMEV Sbjct 361 QFWFRFLLGWLMPPKIALLKATQSEAIRNYYHDHHVIQDLLVPLYKVGDCLEWVHREMEV 420 Query 416 YPIWLCPHKLFKQPIKGQIYPEPGFEYENRQGDTEDAQMYTDVGVYYAPGCVLRGEEFDG 475 YPIWLCPH+++K P++ IYPEPGFE RQGDTE AQMYTD+GVYY PG VLRGE FDG Sbjct 421 YPIWLCPHRIYKLPVRPMIYPEPGFEKHKRQGDTEYAQMYTDIGVYYVPGAVLRGEPFDG 480 Query 476 SEAVRRMEKWLIENHGFQPQYAVSELDEKSFWRMFNGELYEECRKKYRAIGTFMSVYYKS 535 SE R++E WLIENHGFQ QYAV+EL EK+FWRMF+ LYE+CR+KY+AIGTFMSVYYKS Sbjct 481 SEKCRQLELWLIENHGFQAQYAVTELTEKNFWRMFDNSLYEQCRRKYKAIGTFMSVYYKS 540 Query 536 KKGRKTEKEVREAEQAHLETAYAEAD 561 KKGRKTEKEV+EAEQ E EAD Sbjct 541 KKGRKTEKEVQEAEQEKAEQETPEAD 566 >PGSC0003DMP400036653 PGSC0003DMT400054478 DWARF1/DIMINUTO Length=133 Score = 191 bits (486), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 97/128 (76%), Positives = 107/128 (84%), Gaps = 0/128 (0%) Query 434 IYPEPGFEYENRQGDTEDAQMYTDVGVYYAPGCVLRGEEFDGSEAVRRMEKWLIENHGFQ 493 IYPEPGFE RQGDTE AQMYTD+GVYY PG VLRGE FDGSE R++E WLIENHGFQ Sbjct 2 IYPEPGFEKHKRQGDTEYAQMYTDIGVYYVPGAVLRGEPFDGSEKCRQLELWLIENHGFQ 61 Query 494 PQYAVSELDEKSFWRMFNGELYEECRKKYRAIGTFMSVYYKSKKGRKTEKEVREAEQAHL 553 QYAV+EL EK+FWRMF+ LYE+CR+KY+AIGTFMSVYYKSKKGRKTEKEV+EAEQ Sbjct 62 AQYAVTELTEKNFWRMFDNSLYEQCRRKYKAIGTFMSVYYKSKKGRKTEKEVQEAEQEKA 121 Query 554 ETAYAEAD 561 E EAD Sbjct 122 EQETPEAD 129 >PGSC0003DMP400007657 PGSC0003DMT400010990 DWARF1/DIMINUTO Length=95 Score = 127 bits (320), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 61/89 (69%), Positives = 69/89 (78%), Gaps = 0/89 (0%) Query 473 FDGSEAVRRMEKWLIENHGFQPQYAVSELDEKSFWRMFNGELYEECRKKYRAIGTFMSVY 532 F G EAVRR+E W I+NHGFQPQYAV EL EK+FWRMF+G LYE CR+KYRAIGTFMSVY Sbjct 3 FMGIEAVRRLETWFIKNHGFQPQYAVPELSEKNFWRMFDGGLYEHCRRKYRAIGTFMSVY 62 Query 533 YKSKKGRKTEKEVREAEQAHLETAYAEAD 561 Y SKKG+KTE + +AEQ E E D Sbjct 63 YNSKKGKKTENGLPDAEQEPTELETPEVD 91 Lambda K H a alpha 0.321 0.138 0.430 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 4976214880 Database: Potato PGSC DM v3.4 protein sequences Posted date: Mar 21, 2024 3:12 PM Number of letters in database: 16,895,844 Number of sequences in database: 56,218 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40