BLASTN 2.11.0+


Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb
Miller (2000), "A greedy algorithm for aligning DNA sequences", J
Comput Biol 2000; 7(1-2):203-14.



Database: Tomato Genome CDS (ITAG release 4.0)
           34,075 sequences; 34,993,605 total letters



Query= Untitled_sequence

Length=1050
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Solyc06g036110.1.1                                                    1358    0.0  
Solyc03g025340.1.1                                                    167     1e-40


>Solyc06g036110.1.1 
Length=747

 Score = 1358 bits (735),  Expect = 0.0
 Identities = 744/748 (99%), Gaps = 1/748 (0%)
 Strand=Plus/Plus

Query  71   ATGGGATCTCGTTACGAAGTTGAAGTAAAAATAACTTCAGCCAAAGATTTGAAGAACATC  130
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGATCACGTTACGAAGTTGAAGTAAAAATAACTTCAGCCAAAGATTTGAAGAACATC  60

Query  131  AACTGGCGTTACGGTCCACTCAAACCATACGCAGTTGTCTGGGTTGATCCTAATGCTAAA  190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AACTGGCGTTACGGTCCACTCAAACCATACGCAGTTGTCTGGGTTGATCCTAATGCTAAA  120

Query  191  TGCTCCACTAGAGTCGATGAAGATGGTGATACTTCCCCTTATTGGAACGATAAACTTGTG  250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TGCTCCACTAGAGTCGATGAAGATGGTGATACTTCCCCTTATTGGAACGATAAACTTGTG  180

Query  251  ATTCCTTTGTATTCTCCCATTGATGAATCCGTATTGTATATCGATATGGTTCACGCTGTT  310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATTCCTTTGTATTCTCCCATTGATGAATCCGTATTGTATATCGATATGGTTCACGCTGTT  240

Query  311  GGCGCTGAAGAGGACACAAAGCCTCTTATCGGATCCGCTAAGATTCCTCTTAGCGAAGTC  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GGCGCTGAAGAGGACACAAAGCCTCTTATCGGATCCGCTAAGATTCCTCTTAGCGAAGTC  300

Query  371  GTAGAGGAGGCTGGGGTAGGCGGTGAGGTGGAGCGTACGCTCCAACTCAAACGCCCTTCT  430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GTAGAGGAGGCTGGGGTAGGCGGTGAGGTGGAGCGTACGCTCCAACTCAAACGCCCTTCT  360

Query  431  GGCCGTCCTCAAGGGAAGGTAAAAGTACAGGTTACCGTACGCGACCCACGCTATCGTGCG  490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GGCCGTCCTCAAGGGAAGGTAAAAGTACAGGTTACCGTACGCGACCCACGCTATCGTGCG  420

Query  491  CGGGATGCCTATTACGCACCTCCGTACGGTGTGCCCCCTCCGGCCCAGCCTTATAATTAT  550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  CGGGATGCCTATTACGCACCTCCGTACGGTGTGCCCCCTCCGGCCCAGCCTTATAATTAT  480

Query  551  GGGGCCCCAATTCTGCCTTACGGGCAGCCGGGTGTGGGTAATTACGGTCGGGCAGGTGGT  610
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  481  GGGGCCCCAATTCTGCCTTACGGGCAGCCGGGTGTGGGTAATTACGGTCAGGCAGGTGGT  540

Query  611  GTTTATGGTTACGAAGAGGAGAAGAAGAAGAGTAAATTTGGCATGGGGACAGGATTGGCA  670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  GTTTATGGTTACGAAGAGGAGAAGAAGAAGAGTAAATTTGGCATGGGGACAGGATTGGCA  600

Query  671  GTGGGTGCAGTAGCGGGGGTATTGGGGTGGAGTGGCGATAGCAGAGGGTATTGATCACTT  730
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  601  GTGGGTGCAGTAGCGGGGGTATT-GGGTGGAGTGGCGATAGCAGAGGGTATTGATCACTT  659

Query  731  GGAGAATAGTATCGCGGAAGATGCGACGGAGAAAGTGGAGGAAGATCTCGCCGACGACGA  790
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  660  GGAGAATAGTATCGCGGAAGATGCGGCGGAGAAAGTGGAGGAAGATCTCGCCGACGACGA  719

Query  791  TGGTGATTACGGCGATGATGACTTTTAA  818
            ||||||||||||||||||||||||||||
Sbjct  720  TGGTGATTACGGCGATGATGACTTTTAA  747


>Solyc03g025340.1.1 
Length=1050

 Score = 167 bits (90),  Expect = 1e-40
 Identities = 335/455 (74%), Gaps = 9/455 (2%)
 Strand=Plus/Plus

Query  71   ATGGGATCTCGTTACGAAGTTGAAGTAAAAATAACTTCAGCCAAAGATTTGAAGAACATC  130
            |||||||| || | ||| || || || || ||  | ||||| |  |||||||||||| | 
Sbjct  1    ATGGGATCACGATTCGAGGTGGAGGTGAAGATCTCATCAGCTAGGGATTTGAAGAACGTT  60

Query  131  AACTGGCGTTACGGTCCACTCAAACCATACGCAGTTGTCTGGGTTGATCCTAATGCTAAA  190
            || |||||||||||||  || || ||||| || ||||| ||||||||||| || |  |||
Sbjct  61   AATTGGCGTTACGGTCGTCTTAAGCCATATGCTGTTGTTTGGGTTGATCCGAAAGGGAAA  120

Query  191  TGCTCCACTAGAGTCGATGAAGATGGTGATACTTCCCCTTATTGGAACGATAAACTTGTG  250
            |||||||| | ||| |||||  |||| |||||||| || | |||||| || || ||||||
Sbjct  121  TGCTCCACCAAAGTAGATGATAATGGCGATACTTCACCATCTTGGAATGAGAAGCTTGTG  180

Query  251  ATTCCTTTGTATTCTCCCATTGATGAATCCGTATTGTATATCGATATGGTTCACGCTGTT  310
            || || |||||| |||| || || || ||    ||||| |||||| |||| ||||||   
Sbjct  181  ATCCCGTTGTATGCTCCGATCGAAGAGTCTACTTTGTACATCGATGTGGTACACGCTAAC  240

Query  311  GGCGCTGAAGAGGACACAAAGCCTCTTATCGGATCCGCTAAGATTCCTCTTAGCGAAGTC  370
            |   |||| | ||| ||||||||| | || || || |||||| |||| ||  | || || 
Sbjct  241  GCAACTGA-G-GGA-ACAAAGCCTTTGATTGGTTCAGCTAAGCTTCCGCTCCGTGAGGTT  297

Query  371  GTAGAGGAGGCTGGGGTAGGCGGTGAGGTG--G-AGCGTACGCTCCAACTCAAACGCCCT  427
            || ||  ||  | ||  |  |||| |  ||  | || |  ||||  |  | || || |||
Sbjct  298  GTTGAT-AGCGTCGGA-AT-CGGTAATTTGACGGAGAGGTCGCTTGATTTGAAGCGTCCT  354

Query  428  TCTGGCCGTCCTCAAGGGAAGGTAAAAGTACAGGTTACCGTACGCGACCCACGCTATCGT  487
            ||||| || || || || ||||| ||| |  ||||| | || || || || |||||||||
Sbjct  355  TCTGGTCGCCCACATGGAAAGGTGAAAATTGAGGTTGCTGTTCGTGATCCGCGCTATCGT  414

Query  488  GCGCGGGATGCCTATTACGCACCTCCGTACGGTGT  522
            |||| |||| | |||||||||||||| ||||||||
Sbjct  415  GCGCCGGATCCGTATTACGCACCTCCTTACGGTGT  449



Lambda      K        H
    1.33    0.621     1.12 

Gapped
Lambda      K        H
    1.28    0.460    0.850 

Effective search space used: 34995273250


  Database: Tomato Genome CDS (ITAG release 4.0)
    Posted date:  Mar 21, 2024  4:17 PM
  Number of letters in database: 34,993,605
  Number of sequences in database:  34,075



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5